Citrus Sinensis ID: 019959
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 333 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C5J9 | 342 | Uncharacterized GTP-bindi | yes | no | 0.996 | 0.970 | 0.779 | 1e-148 | |
| Q5HYI8 | 236 | Rab-like protein 3 OS=Hom | yes | no | 0.576 | 0.813 | 0.291 | 5e-19 | |
| Q6TNS7 | 233 | Rab-like protein 3 OS=Dan | yes | no | 0.402 | 0.575 | 0.333 | 4e-18 | |
| Q9D4V7 | 236 | Rab-like protein 3 OS=Mus | yes | no | 0.573 | 0.809 | 0.286 | 6e-18 | |
| Q32LJ6 | 236 | Rab-like protein 3 OS=Bos | yes | no | 0.552 | 0.779 | 0.285 | 7e-18 | |
| A4IHM6 | 235 | Rab-like protein 3 OS=Xen | yes | no | 0.390 | 0.553 | 0.318 | 8e-18 | |
| Q5ZKR4 | 230 | Rab-like protein 3 OS=Gal | yes | no | 0.390 | 0.565 | 0.318 | 1e-17 | |
| Q6GPS4 | 235 | Rab-like protein 3 OS=Xen | N/A | no | 0.390 | 0.553 | 0.318 | 2e-17 | |
| Q9XI98 | 206 | Ras-related protein RABG3 | no | no | 0.438 | 0.708 | 0.285 | 3e-12 | |
| O24461 | 207 | Ras-related protein Rab7 | N/A | no | 0.492 | 0.792 | 0.280 | 6e-12 |
| >sp|Q9C5J9|Y5483_ARATH Uncharacterized GTP-binding protein At5g64813 OS=Arabidopsis thaliana GN=At5g64813 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 523 bits (1348), Expect = e-148, Method: Compositional matrix adjust.
Identities = 265/340 (77%), Positives = 292/340 (85%), Gaps = 8/340 (2%)
Query: 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVK 61
FW+ERERENKE P GQVRVLVVGDSGVGKTSLV+LI KGSS RP QTIGCTVGVK
Sbjct: 3 FWRERERENKEQILAPLCGQVRVLVVGDSGVGKTSLVHLINKGSSIVRPPQTIGCTVGVK 62
Query: 62 HITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT 121
HITYGS SSS+SI+GDSERDFFVELWD+SGHERYKDCRS+ YSQINGVIFVHDLSQRRT
Sbjct: 63 HITYGSPASSSSSIQGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRT 122
Query: 122 KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181
KTSLQKWA E+A +GTFSAPL SGGPGGLPVPY+V+GNKAD+AAKEGT+GSSGNLVDAAR
Sbjct: 123 KTSLQKWASEVAATGTFSAPLPSGGPGGLPVPYIVVGNKADIAAKEGTKGSSGNLVDAAR 182
Query: 182 QWVEKQGLLP-SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240
WVEKQGLLP SSE+LPL ESFPG GGLIAAAKE RYDKEA+ KFFRMLIRRRYFSDE+P
Sbjct: 183 HWVEKQGLLPSSSEDLPLFESFPGNGGLIAAAKETRYDKEALNKFFRMLIRRRYFSDELP 242
Query: 241 APNPWSISPT-HKPIQRLDENSSDDDKFYS-SGYSSDPY---NMLPPLPAQRNLTPPPTL 295
A +PWSISP QRLDE +SDDD+FY + + DPY N +PPLPAQRNLTPPPTL
Sbjct: 243 AASPWSISPVPTSSSQRLDEITSDDDQFYKRTSFHGDPYKYNNTIPPLPAQRNLTPPPTL 302
Query: 296 YPQQPVSVQENYNLPRFSLTGSQEISS--SARSKRTDINV 333
YPQQPVS +NY +PR+SL+ QE ++ SARSKR DINV
Sbjct: 303 YPQQPVSTPDNYTIPRYSLSSVQETTNNGSARSKRMDINV 342
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5HYI8|RABL3_HUMAN Rab-like protein 3 OS=Homo sapiens GN=RABL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 107/233 (45%), Gaps = 41/233 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+V+VLV+GDSGVGK+SLV+L+ + PS T+GC+V V+ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTP--------EE 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE----- 131
+ +++ELWD+ G K R++ Y+ +NG+IFVHDL+ +++ +L++W++E
Sbjct: 58 KTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRD 117
Query: 132 ------IATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVE 185
+ T+G + + +P +VIG K D E R R
Sbjct: 118 LVPTGVLVTNGDYDQEQFADN----QIPLLVIGTKLD-QIHETKRHEV-----LTRTAFL 167
Query: 186 KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDE 238
+ P L T G A K +R FF +I +RYF E
Sbjct: 168 AEDFNPEEINLDCTNPRYLAAGSSNAVKLSR--------FFDKVIEKRYFLRE 212
|
Homo sapiens (taxid: 9606) |
| >sp|Q6TNS7|RABL3_DANRE Rab-like protein 3 OS=Danio rerio GN=rabl3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 19/153 (12%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+V+VLV+GDSGVGK+SLV+L+ + PS T+GC+V V+ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYREGTP--------EE 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE-IATS 135
+ F++ELWD+ G K R++ Y+ +NG+I VHDL+ +++ +L +W++E ++
Sbjct: 58 KAFYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLEALSKD 117
Query: 136 GTFSAPLASGGP------GGLPVPYVVIGNKAD 162
+ + + S G VP ++IG K D
Sbjct: 118 SSPTGIIVSNGDYDREQFAENAVPLLLIGTKFD 150
|
Danio rerio (taxid: 7955) |
| >sp|Q9D4V7|RABL3_MOUSE Rab-like protein 3 OS=Mus musculus GN=Rabl3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 43/234 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+V+VLV+GDSGVGK+SLV+L+ PS T+GC+V ++ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDYKEGTP--------EE 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSG 136
+ +++ELWD+ G K R++ Y+ +NG+I VHDL+ +++ +L +W++E+
Sbjct: 58 KTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRD 117
Query: 137 TF-SAPLASGGP------GGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL 189
+ L + G +P +VIG K D E R + + +
Sbjct: 118 AVPTGVLVTNGDYDREQFADNQIPLLVIGTKLD-QIHETKR----------HEVLIRTAF 166
Query: 190 LP---SSEELPLTESFP--GGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDE 238
L ++EE+ L + P G A K +R FF +I +RYF E
Sbjct: 167 LAEDFNAEEINLDCTNPRSSAAGSSNAVKLSR--------FFDKVIEKRYFFRE 212
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Mus musculus (taxid: 10090) |
| >sp|Q32LJ6|RABL3_BOVIN Rab-like protein 3 OS=Bos taurus GN=RABL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 51/235 (21%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+V+VLV+GDSGVGK+SLV+L+ + PS T+GC+V V+ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTP--------EE 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE----- 131
+ +++ELWD+ G K R++ Y+ +NG+I VHDL+ +++ +L +W++E
Sbjct: 58 KTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLEALNRD 117
Query: 132 ------IATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVE 185
+ T+G + + +P +VIG K D E R + +
Sbjct: 118 LVPTGVLVTNGDYDREQFADN----QIPLLVIGTKLD-QIHENKR----------HEVLT 162
Query: 186 KQGLLP---SSEELPLTESFPG--GGGLIAAAKEARYDKEAVMKFFRMLIRRRYF 235
+ L ++EE+ L + P G A K +R FF +I +RYF
Sbjct: 163 RTAFLAEDFNAEEINLDCTNPRYLAAGSSNAVKLSR--------FFDKVIEKRYF 209
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Bos taurus (taxid: 9913) |
| >sp|A4IHM6|RABL3_XENTR Rab-like protein 3 OS=Xenopus tropicalis GN=rabl3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 27/157 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+V+VLV+GDSGVGK+SLV+L+ + PS T+GC+V V+ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRLHEYREGTP--------EE 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE----- 131
+ +++ELWD+ G K R++ Y+ +NG+I VHDL+ +++ +L +W++E
Sbjct: 58 KTYYIELWDVGGSVGSASSVKSTRAVFYNAVNGIILVHDLTNKKSSQNLYRWSLEALNRD 117
Query: 132 ------IATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
+ T+G + + +P +VIG K D
Sbjct: 118 LQPTGVLVTNGDYDREQFADN----QIPLLVIGTKLD 150
|
Xenopus tropicalis (taxid: 8364) |
| >sp|Q5ZKR4|RABL3_CHICK Rab-like protein 3 OS=Gallus gallus GN=RABL3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 27/157 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+V+VLV+GDSGVGK+SLV+L+ PS T+GC+V V+ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDVRIHDYKEGTP--------EE 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE----- 131
+ +++ELWD+ G K R++ Y+ +NG+I VHDL+ +++ +L +W++E
Sbjct: 58 KTYYIELWDVGGSVGSATSVKSTRAVFYNSLNGIILVHDLTNKKSSQNLYRWSLEALNRD 117
Query: 132 ------IATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
+ T+G + + +P +VIG K D
Sbjct: 118 VAPTGVLVTNGDYDREQFADN----QIPLLVIGTKLD 150
|
Gallus gallus (taxid: 9031) |
| >sp|Q6GPS4|RABL3_XENLA Rab-like protein 3 OS=Xenopus laevis GN=rabl3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 27/157 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+V+VLV+GDSGVGK+SLV+L+ + PS T+GC+V V+ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRLHEYREGTP--------EE 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE----- 131
+ ++ ELWD+ G K R++ Y+ +NG+I VHDL+ +++ +L +W++E
Sbjct: 58 KTYYTELWDVGGSVGSASSVKSTRAVFYNAVNGIILVHDLTNKKSSQNLYRWSLEALNRD 117
Query: 132 ------IATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
+ T+G + + +P +VIG K D
Sbjct: 118 LQPMGVLVTNGDYDREQFADN----QIPLLVIGTKLD 150
|
Xenopus laevis (taxid: 8355) |
| >sp|Q9XI98|RAG3E_ARATH Ras-related protein RABG3e OS=Arabidopsis thaliana GN=RABG3E PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 29/175 (16%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++V+++GDSGVGKTSL+N V ++ TIG K + + +R
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-------------EDR 55
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
F +++WD +G ER++ Y + + V+D++ ++ L W E + S P
Sbjct: 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFEDLNNWREEFLIQASPSDP 115
Query: 142 LASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD--AARQWVEKQGLLPSSE 194
P+VVIGNK DV G S +V AR W +G +P E
Sbjct: 116 --------ENFPFVVIGNKIDV------DGGSSRVVSEKKARAWCASKGNIPYYE 156
|
Intracellular vesicle trafficking and protein transport. May play a role in adaptation to stress by recylcing macromolecules in specific cellular compartments. Arabidopsis thaliana (taxid: 3702) |
| >sp|O24461|RAB7_PRUAR Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 46/210 (21%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++V+++GDSGVGKTSL+N V ++ TIG K + + +R
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-------------EDR 55
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
F +++WD +G ER++ Y + + V+D++ ++ +L W E T S P
Sbjct: 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDP 115
Query: 142 LASGGPGGLPVPYVVIGNKADV----------------AAKEG------TRGSSGNLVDA 179
P+VV+GNK DV A +G T G VD
Sbjct: 116 --------ENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDD 167
Query: 180 ARQWVEKQGLLPSSEE---LPLTESFPGGG 206
A Q + K L EE LP T GGG
Sbjct: 168 AFQCIAKNALNNEPEEEIYLPDTIDVAGGG 197
|
Protein transport. Probably involved in vesicular traffic. Prunus armeniaca (taxid: 36596) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 333 | ||||||
| 255585889 | 336 | GTP-binding protein yptv3, putative [Ric | 1.0 | 0.991 | 0.827 | 1e-161 | |
| 224096339 | 336 | predicted protein [Populus trichocarpa] | 1.0 | 0.991 | 0.827 | 1e-160 | |
| 224083815 | 336 | predicted protein [Populus trichocarpa] | 1.0 | 0.991 | 0.818 | 1e-154 | |
| 291191425 | 338 | unknown [Dimocarpus longan] | 1.0 | 0.985 | 0.843 | 1e-150 | |
| 225438537 | 336 | PREDICTED: uncharacterized GTP-binding p | 0.996 | 0.988 | 0.792 | 1e-149 | |
| 449461441 | 336 | PREDICTED: uncharacterized GTP-binding p | 1.0 | 0.991 | 0.794 | 1e-146 | |
| 18424871 | 342 | Ras-related small GTP-binding family pro | 0.996 | 0.970 | 0.779 | 1e-146 | |
| 356512750 | 336 | PREDICTED: uncharacterized GTP-binding p | 1.0 | 0.991 | 0.815 | 1e-142 | |
| 297794079 | 342 | hypothetical protein ARALYDRAFT_496698 [ | 0.996 | 0.970 | 0.764 | 1e-142 | |
| 356525537 | 333 | PREDICTED: uncharacterized GTP-binding p | 0.990 | 0.990 | 0.806 | 1e-139 |
| >gi|255585889|ref|XP_002533618.1| GTP-binding protein yptv3, putative [Ricinus communis] gi|223526492|gb|EEF28762.1| GTP-binding protein yptv3, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust.
Identities = 278/336 (82%), Positives = 309/336 (91%), Gaps = 3/336 (0%)
Query: 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV 60
MFW++RERENK+ NGGPP GQVRVLV GDSGVGKTSLV+LIVKGSS + P QTIGCTVGV
Sbjct: 1 MFWRDRERENKDQNGGPPCGQVRVLVAGDSGVGKTSLVHLIVKGSSTAHPPQTIGCTVGV 60
Query: 61 KHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR 120
KH+TYG+SGSSS+S+KGD+ERDFFVELWD+SGHERYKDCRS+ YSQINGVIFVHDLSQRR
Sbjct: 61 KHVTYGNSGSSSSSLKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR 120
Query: 121 TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180
TKTSLQKWA EIA +GTFSAPL SGGP G+PVPY+VIGNKADVAAKEGTRGSSGNLVD A
Sbjct: 121 TKTSLQKWASEIAATGTFSAPLGSGGPCGIPVPYIVIGNKADVAAKEGTRGSSGNLVDVA 180
Query: 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240
RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEA++KFFRMLIRRRYFSDE+
Sbjct: 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEALLKFFRMLIRRRYFSDELT 240
Query: 241 APNPWSISPTHKPIQRLDENSSDDDKFYSSG-YSSDP--YNMLPPLPAQRNLTPPPTLYP 297
AP+PW++SP + +QRLDENSSDDD+FY S + DP YNMLPPLPAQRNLTPPPTLYP
Sbjct: 241 APSPWTVSPAQRSVQRLDENSSDDDQFYKSKRLTGDPYKYNMLPPLPAQRNLTPPPTLYP 300
Query: 298 QQPVSVQENYNLPRFSLTGSQEISSSARSKRTDINV 333
QQPVSV ENY+ PRFSL+ +QE+S++ARSKR DINV
Sbjct: 301 QQPVSVTENYSFPRFSLSDAQELSNTARSKRLDINV 336
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096339|ref|XP_002310606.1| predicted protein [Populus trichocarpa] gi|222853509|gb|EEE91056.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 278/336 (82%), Positives = 310/336 (92%), Gaps = 3/336 (0%)
Query: 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV 60
MFW++RERENK+ NGGPP GQVRVLVVGDSGVGKTSLV+LIVKGSS +RP QTIGCTVGV
Sbjct: 1 MFWRDRERENKDQNGGPPCGQVRVLVVGDSGVGKTSLVHLIVKGSSSARPPQTIGCTVGV 60
Query: 61 KHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR 120
KHI+YG+S SSS+SIKGDSERDFFVELWD+SGH+RYKDCRS+ YSQINGVIFVHDLSQRR
Sbjct: 61 KHISYGNSSSSSSSIKGDSERDFFVELWDVSGHDRYKDCRSLFYSQINGVIFVHDLSQRR 120
Query: 121 TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180
TKTSLQKWA EIA +GTFSAPL+SGGPGGLPVPY+VIGNK+DVAAKEGTRGSSGNLVDAA
Sbjct: 121 TKTSLQKWASEIAATGTFSAPLSSGGPGGLPVPYIVIGNKSDVAAKEGTRGSSGNLVDAA 180
Query: 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240
RQWVEKQGLLPSSEE+PLTESFPG GGLIAAAKEARYDKEAV+KFFR LIRRRYFSDE+P
Sbjct: 181 RQWVEKQGLLPSSEEIPLTESFPGSGGLIAAAKEARYDKEAVVKFFRTLIRRRYFSDELP 240
Query: 241 APNPWSISPTHKPIQRLDENSSDDDKFY-SSGYSSDP--YNMLPPLPAQRNLTPPPTLYP 297
AP+PWS P + +QRLDEN+SD+D FY ++ + DP YN LPPLPAQRNLTPPPTLYP
Sbjct: 241 APSPWSAYPVQRSVQRLDENTSDEDPFYKTTSLAGDPYKYNTLPPLPAQRNLTPPPTLYP 300
Query: 298 QQPVSVQENYNLPRFSLTGSQEISSSARSKRTDINV 333
QQPVSV E+Y++PRF+LTGSQEIS++AR KR DINV
Sbjct: 301 QQPVSVTESYSIPRFTLTGSQEISNTARLKRMDINV 336
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083815|ref|XP_002307133.1| predicted protein [Populus trichocarpa] gi|222856582|gb|EEE94129.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 275/336 (81%), Positives = 306/336 (91%), Gaps = 3/336 (0%)
Query: 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV 60
MFW++RERENK+ NGGPP GQVRVL+VGDSGVGKTSLV+LI+K SS +RP QTIGCTVGV
Sbjct: 1 MFWRDRERENKDQNGGPPCGQVRVLIVGDSGVGKTSLVHLIIKSSSIARPPQTIGCTVGV 60
Query: 61 KHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR 120
KHITYG+SGSSS+SIKGDSERDFF+ELWD+SGHERYKDCRS+ YSQINGVIFVHDLSQRR
Sbjct: 61 KHITYGNSGSSSSSIKGDSERDFFIELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR 120
Query: 121 TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180
TKTSLQKWA EIA +GTFSAPL+SGGPGGLPVPY+V+ NKADVAAKEGTRGSSGNLVDAA
Sbjct: 121 TKTSLQKWASEIAATGTFSAPLSSGGPGGLPVPYIVVSNKADVAAKEGTRGSSGNLVDAA 180
Query: 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240
R WVEKQGLLPSSEE+PLTESFPG GGLI+AAKEARYDKEAV++FFRMLIRRRYFSDE+P
Sbjct: 181 RHWVEKQGLLPSSEEIPLTESFPGSGGLISAAKEARYDKEAVVRFFRMLIRRRYFSDELP 240
Query: 241 APNPWSISPTHKPIQRLDENSSDDDKFY---SSGYSSDPYNMLPPLPAQRNLTPPPTLYP 297
A +PWS SP + +QRLDEN SD+D FY S S YNMLPPLPAQRNLTPPPTLYP
Sbjct: 241 ASSPWSASPVQRSVQRLDENISDEDPFYKATSLAGDSYKYNMLPPLPAQRNLTPPPTLYP 300
Query: 298 QQPVSVQENYNLPRFSLTGSQEISSSARSKRTDINV 333
QQPVSV+E+Y +PRF L+GSQEIS++ARSKR DINV
Sbjct: 301 QQPVSVRESYGIPRFPLSGSQEISNTARSKRMDINV 336
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|291191425|gb|ACS66798.2| unknown [Dimocarpus longan] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 285/338 (84%), Positives = 307/338 (90%), Gaps = 5/338 (1%)
Query: 1 MFWKERERENKELNGG-PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVG 59
MFW+ERERE KE NGG PP+GQ+RVLVVGDSGVGKTSLV+LIVKGSS +RP QTIGCTVG
Sbjct: 1 MFWRERERETKEQNGGGPPSGQIRVLVVGDSGVGKTSLVHLIVKGSSTARPPQTIGCTVG 60
Query: 60 VKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
VKH+TYG+SGSSS+SIKGDSERDFFVELWD+SGHERYKDCRS+ YSQINGVIFVHDLSQR
Sbjct: 61 VKHLTYGNSGSSSSSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR 120
Query: 120 RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179
RTKTSLQKWA E+A SGTFSAPL S GPGGLPVPY+VIGNKADVAAKEGTRGSSGNLV+
Sbjct: 121 RTKTSLQKWASEVAASGTFSAPLGSAGPGGLPVPYMVIGNKADVAAKEGTRGSSGNLVEV 180
Query: 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEM 239
ARQWVEKQGLL +SEELPLTESFPG GG IAAAKEARYDKEAV+KFFRMLIRRRYFSDE+
Sbjct: 181 ARQWVEKQGLLSTSEELPLTESFPGSGGAIAAAKEARYDKEAVIKFFRMLIRRRYFSDEL 240
Query: 240 PAPNPWSISPTHKP-IQRLDENSSDDDKFY-SSGYSSDP--YNMLPPLPAQRNLTPPPTL 295
P PNPWSISP KP QRLDEN SD+D FY S+ S DP YN LPPLPAQRNLTPPPTL
Sbjct: 241 PVPNPWSISPAQKPSSQRLDENFSDEDSFYKSTSLSGDPYKYNTLPPLPAQRNLTPPPTL 300
Query: 296 YPQQPVSVQENYNLPRFSLTGSQEISSSARSKRTDINV 333
YPQQPVSV ENY+LPRFS +GS EISS+ARSKR+DINV
Sbjct: 301 YPQQPVSVPENYSLPRFSPSGSSEISSTARSKRSDINV 338
|
Source: Dimocarpus longan Species: Dimocarpus longan Genus: Dimocarpus Family: Sapindaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438537|ref|XP_002279569.1| PREDICTED: uncharacterized GTP-binding protein At5g64813 [Vitis vinifera] gi|147843269|emb|CAN80534.1| hypothetical protein VITISV_035973 [Vitis vinifera] gi|296082516|emb|CBI21521.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 267/337 (79%), Positives = 299/337 (88%), Gaps = 5/337 (1%)
Query: 1 MFWKERERENKELNGG-PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVG 59
MFW+ER+RENKE NGG PP GQVRVLVVGDSGVGKTSLV+L+VKGSS ++P QT+GCTVG
Sbjct: 1 MFWRERDRENKEHNGGGPPCGQVRVLVVGDSGVGKTSLVHLLVKGSSITQPPQTVGCTVG 60
Query: 60 VKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
VKH YG+SGSSSNSIKGDSERDFF+ELWD+SGH+RYK+CRS+ YSQINGVIFVHDLSQR
Sbjct: 61 VKHTAYGNSGSSSNSIKGDSERDFFIELWDVSGHDRYKECRSLFYSQINGVIFVHDLSQR 120
Query: 120 RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179
RTK SLQKWA EIA +GTFSAPL SGGP GLPVP++VIGNK D+AAKEGTRGSSGNLVD
Sbjct: 121 RTKASLQKWAAEIAATGTFSAPLGSGGPCGLPVPFIVIGNKTDIAAKEGTRGSSGNLVDV 180
Query: 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEM 239
ARQWVEKQGLLPSSEELPLTESFP GG++AAAKEAR DKEAVMKFFR+LIRRRYFSDE+
Sbjct: 181 ARQWVEKQGLLPSSEELPLTESFPSSGGILAAAKEARVDKEAVMKFFRLLIRRRYFSDEL 240
Query: 240 PAPNPWSISPTHKPIQRLDENSSDDDKFY-SSGYSSDP--YNMLPPLPAQRNLTPPPTLY 296
PAP+PWSISP PIQR +N S+D++FY ++ DP YN+LPPLPAQRNLTPPPTLY
Sbjct: 241 PAPSPWSISPVQGPIQRAGDNLSEDNQFYKNTSLGGDPYKYNVLPPLPAQRNLTPPPTLY 300
Query: 297 PQQPVSVQENYNLPRFSLTGSQEISSSARSKRTDINV 333
PQQPVSV ENYNLPRF+L GS EI ++ R KR DINV
Sbjct: 301 PQQPVSVAENYNLPRFALNGSPEIINT-RQKRADINV 336
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461441|ref|XP_004148450.1| PREDICTED: uncharacterized GTP-binding protein At5g64813-like [Cucumis sativus] gi|449529012|ref|XP_004171495.1| PREDICTED: uncharacterized GTP-binding protein At5g64813-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 267/336 (79%), Positives = 300/336 (89%), Gaps = 3/336 (0%)
Query: 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV 60
MFWK+R+RE+KELNGGP GQVRVLVVGDSGVGKTSLV+LIV GSS S PSQTIGCTVGV
Sbjct: 1 MFWKDRDREHKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISSPSQTIGCTVGV 60
Query: 61 KHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR 120
KHITYG++GSSS+SIKGD+ERDFFVELWD+SGH+RYKDCRS+ YSQINGVIFVHDLSQRR
Sbjct: 61 KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHDRYKDCRSLFYSQINGVIFVHDLSQRR 120
Query: 121 TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180
TK+SLQKWAVEIAT GTFSAPL SGGPGGLPVPY+VIGNK D+AAKEGTRGSSGNLVD A
Sbjct: 121 TKSSLQKWAVEIATIGTFSAPLGSGGPGGLPVPYIVIGNKVDIAAKEGTRGSSGNLVDVA 180
Query: 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240
RQWVEKQGLL SEE+PLTESFPGGGGL+AAAKEARYDKEAV FFR LIRRRYFSD +P
Sbjct: 181 RQWVEKQGLLSFSEEIPLTESFPGGGGLLAAAKEARYDKEAVTNFFRTLIRRRYFSDSLP 240
Query: 241 APNPWSISPTHKPIQRLDENSSDDDKFYSS-GYSSD--PYNMLPPLPAQRNLTPPPTLYP 297
A WS+SP K +QRLD+ SD+++ YS +SS+ YN LPPLPAQRNLTPPPTLYP
Sbjct: 241 AAITWSVSPVPKSVQRLDDTISDEEQSYSRPSFSSETYKYNALPPLPAQRNLTPPPTLYP 300
Query: 298 QQPVSVQENYNLPRFSLTGSQEISSSARSKRTDINV 333
QQP S ENY+LP+F+L+ SQEI++S+RSKR+DINV
Sbjct: 301 QQPFSASENYSLPKFALSASQEINNSSRSKRSDINV 336
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18424871|ref|NP_568996.1| Ras-related small GTP-binding family protein [Arabidopsis thaliana] gi|29839609|sp|Q9C5J9.1|Y5483_ARATH RecName: Full=Uncharacterized GTP-binding protein At5g64813 gi|13430582|gb|AAK25913.1|AF360203_1 unknown protein [Arabidopsis thaliana] gi|14532852|gb|AAK64108.1| unknown protein [Arabidopsis thaliana] gi|332010571|gb|AED97954.1| Ras-related small GTP-binding family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 265/340 (77%), Positives = 292/340 (85%), Gaps = 8/340 (2%)
Query: 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVK 61
FW+ERERENKE P GQVRVLVVGDSGVGKTSLV+LI KGSS RP QTIGCTVGVK
Sbjct: 3 FWRERERENKEQILAPLCGQVRVLVVGDSGVGKTSLVHLINKGSSIVRPPQTIGCTVGVK 62
Query: 62 HITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT 121
HITYGS SSS+SI+GDSERDFFVELWD+SGHERYKDCRS+ YSQINGVIFVHDLSQRRT
Sbjct: 63 HITYGSPASSSSSIQGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRT 122
Query: 122 KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181
KTSLQKWA E+A +GTFSAPL SGGPGGLPVPY+V+GNKAD+AAKEGT+GSSGNLVDAAR
Sbjct: 123 KTSLQKWASEVAATGTFSAPLPSGGPGGLPVPYIVVGNKADIAAKEGTKGSSGNLVDAAR 182
Query: 182 QWVEKQGLLP-SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240
WVEKQGLLP SSE+LPL ESFPG GGLIAAAKE RYDKEA+ KFFRMLIRRRYFSDE+P
Sbjct: 183 HWVEKQGLLPSSSEDLPLFESFPGNGGLIAAAKETRYDKEALNKFFRMLIRRRYFSDELP 242
Query: 241 APNPWSISPT-HKPIQRLDENSSDDDKFYS-SGYSSDPY---NMLPPLPAQRNLTPPPTL 295
A +PWSISP QRLDE +SDDD+FY + + DPY N +PPLPAQRNLTPPPTL
Sbjct: 243 AASPWSISPVPTSSSQRLDEITSDDDQFYKRTSFHGDPYKYNNTIPPLPAQRNLTPPPTL 302
Query: 296 YPQQPVSVQENYNLPRFSLTGSQEISS--SARSKRTDINV 333
YPQQPVS +NY +PR+SL+ QE ++ SARSKR DINV
Sbjct: 303 YPQQPVSTPDNYTIPRYSLSSVQETTNNGSARSKRMDINV 342
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512750|ref|XP_003525079.1| PREDICTED: uncharacterized GTP-binding protein At5g64813-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 274/336 (81%), Positives = 301/336 (89%), Gaps = 3/336 (0%)
Query: 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV 60
MFW++RERENKELNGG G VRVLVVGDSGVGKTSLVNLIVKGS +RP QTIGC+V V
Sbjct: 1 MFWRDRERENKELNGGVLCGLVRVLVVGDSGVGKTSLVNLIVKGSPIARPPQTIGCSVDV 60
Query: 61 KHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR 120
KHITYG+SGSSS+S+KGDSERDFFVELWD+SGHERYKDCRS+ YSQINGVIFVHDLSQRR
Sbjct: 61 KHITYGNSGSSSSSLKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR 120
Query: 121 TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180
TKTSLQKWA EIA +GTFSAPL SGGPGGLPVPY+ IGNKAD+AAKEGTRGSSGNLVD A
Sbjct: 121 TKTSLQKWAAEIAATGTFSAPLGSGGPGGLPVPYIFIGNKADIAAKEGTRGSSGNLVDVA 180
Query: 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240
RQWVEKQGLLPSSEELPLTESFPG GGLIAAAKEAR+DKEAV+KFFRMLIRRRYFSDE+
Sbjct: 181 RQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARHDKEAVVKFFRMLIRRRYFSDEIQ 240
Query: 241 APNP-WSISPTHKPIQRLDENSSDDDKFYSSGYSSDP--YNMLPPLPAQRNLTPPPTLYP 297
P+P WSI + QR+DEN ++DD+ Y + SSDP YNMLPPLPAQRNLTPPPTLYP
Sbjct: 241 IPSPAWSIPSVQRQAQRIDENFTEDDQSYDTSLSSDPYKYNMLPPLPAQRNLTPPPTLYP 300
Query: 298 QQPVSVQENYNLPRFSLTGSQEISSSARSKRTDINV 333
QQPVSV ENY+ PRFSL+GS EIS+ AR+KR+DINV
Sbjct: 301 QQPVSVSENYSFPRFSLSGSSEISTVARTKRSDINV 336
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297794079|ref|XP_002864924.1| hypothetical protein ARALYDRAFT_496698 [Arabidopsis lyrata subsp. lyrata] gi|297310759|gb|EFH41183.1| hypothetical protein ARALYDRAFT_496698 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/340 (76%), Positives = 288/340 (84%), Gaps = 8/340 (2%)
Query: 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVK 61
FW+ERER+NKE P GQVRVLVVGDSGVGKTSLV+LI KGSS RP QTIGCTVGVK
Sbjct: 3 FWRERERDNKEQILAPLCGQVRVLVVGDSGVGKTSLVHLINKGSSIVRPPQTIGCTVGVK 62
Query: 62 HITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT 121
HITYGS SSS+SI+GDSERDFFVELWD+SGHERYKDCRS+ YSQINGVIFVHDLSQRRT
Sbjct: 63 HITYGSPASSSSSIQGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRT 122
Query: 122 KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181
KTSLQ+WA E+A +GTFSAPL SGGPGGLPVPY+V+GNKAD+AAKEGT+GSSGNLVDAAR
Sbjct: 123 KTSLQRWASEVAATGTFSAPLPSGGPGGLPVPYIVVGNKADIAAKEGTKGSSGNLVDAAR 182
Query: 182 QWVEKQGLLP-SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240
WVEKQGLLP SSE+LPL ESFPG GGLIAAAKE RYDKEA+ KFFRMLIRRRYFSDE+P
Sbjct: 183 HWVEKQGLLPSSSEDLPLFESFPGNGGLIAAAKETRYDKEALNKFFRMLIRRRYFSDELP 242
Query: 241 APNPW-SISPTHKPIQRLDENSSDDDKFYS-SGYSSDPY---NMLPPLPAQRNLTPPPTL 295
A +PW S QRLDE +SDDD+FY + DPY N LPPLPAQRNLTPPPTL
Sbjct: 243 AASPWSVSSIPTSSSQRLDEITSDDDQFYKRTSLHGDPYKYNNTLPPLPAQRNLTPPPTL 302
Query: 296 YPQQPVSVQENYNLPRFSLTGSQEISS--SARSKRTDINV 333
YPQQPVS +NY +PR+SL+ QE ++ SAR+KR DINV
Sbjct: 303 YPQQPVSTPDNYAIPRYSLSSVQESTNNGSARAKRMDINV 342
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525537|ref|XP_003531381.1| PREDICTED: uncharacterized GTP-binding protein At5g64813-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 271/336 (80%), Positives = 300/336 (89%), Gaps = 6/336 (1%)
Query: 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV 60
MFW++RERENKELNGG GQVRVLVVGDSGVGKTSLVNLIVKGS +RP QTIGC+V V
Sbjct: 1 MFWRDRERENKELNGGVLCGQVRVLVVGDSGVGKTSLVNLIVKGSPIARPPQTIGCSVDV 60
Query: 61 KHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR 120
KHITYG+SGSSS+S+KGDSERDFFVELWD+SGHERYKDCRS+ YSQINGVIFVHDLSQRR
Sbjct: 61 KHITYGNSGSSSSSLKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR 120
Query: 121 TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180
TKTSLQKWA EIA +GTFSAPL SGGPGGLPVPY+VIGNKAD+AAK+G RGSSGNLVD A
Sbjct: 121 TKTSLQKWAAEIAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAAKDGPRGSSGNLVDVA 180
Query: 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240
RQWVEKQGLLPSSEELPLTESFP GGLIAAAKEAR+DKEAV+KFFR LIRRRYFSDE+
Sbjct: 181 RQWVEKQGLLPSSEELPLTESFPSNGGLIAAAKEARHDKEAVVKFFRKLIRRRYFSDEIQ 240
Query: 241 APNP-WSISPTHKPIQRLDENSSDDDKFYSSGYSSDP--YNMLPPLPAQRNLTPPPTLYP 297
P+P WSI + QR+DEN ++DD+ Y+ +SDP YNMLPPLPAQRNLTPPPTLYP
Sbjct: 241 IPSPAWSIPSVQRQAQRIDENFTEDDQSYN---TSDPYKYNMLPPLPAQRNLTPPPTLYP 297
Query: 298 QQPVSVQENYNLPRFSLTGSQEISSSARSKRTDINV 333
QQPVSV ENY+ PRFSL+GS EIS+ AR+KR+DINV
Sbjct: 298 QQPVSVSENYSFPRFSLSGSSEISTVARTKRSDINV 333
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 333 | ||||||
| TAIR|locus:505006713 | 342 | LIP1 "Light Insensitive Period | 0.996 | 0.970 | 0.626 | 6e-103 | |
| TAIR|locus:2178148 | 333 | AT5G09910 [Arabidopsis thalian | 0.975 | 0.975 | 0.571 | 2.2e-89 | |
| UNIPROTKB|Q5HYI8 | 236 | RABL3 "Rab-like protein 3" [Ho | 0.309 | 0.436 | 0.373 | 8.4e-21 | |
| ZFIN|ZDB-GENE-040808-11 | 245 | rabl3 "RAB, member of RAS onco | 0.309 | 0.420 | 0.373 | 3.6e-20 | |
| UNIPROTKB|E2R3T1 | 264 | RABL3 "Uncharacterized protein | 0.309 | 0.390 | 0.365 | 5.8e-20 | |
| MGI|MGI:1914907 | 236 | Rabl3 "RAB, member of RAS onco | 0.312 | 0.440 | 0.353 | 5.8e-20 | |
| UNIPROTKB|C9JXM3 | 212 | RABL3 "Rab-like protein 3" [Ho | 0.309 | 0.485 | 0.373 | 2.2e-18 | |
| UNIPROTKB|F8WDC7 | 135 | RABL3 "Rab-like protein 3" [Ho | 0.309 | 0.762 | 0.373 | 2.2e-18 | |
| UNIPROTKB|F8WF50 | 129 | RABL3 "Rab-like protein 3" [Ho | 0.309 | 0.798 | 0.373 | 2.2e-18 | |
| UNIPROTKB|Q32LJ6 | 236 | RABL3 "Rab-like protein 3" [Bo | 0.309 | 0.436 | 0.365 | 1.6e-17 |
| TAIR|locus:505006713 LIP1 "Light Insensitive Period1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
Identities = 213/340 (62%), Positives = 235/340 (69%)
Query: 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVK 61
FW+ERERENKE P GQVRVLVVGDSGVGKTSLV+LI KGSS RP QTIGCTVGVK
Sbjct: 3 FWRERERENKEQILAPLCGQVRVLVVGDSGVGKTSLVHLINKGSSIVRPPQTIGCTVGVK 62
Query: 62 HITYXXXXXXXXXXXXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT 121
HITY ERDFFVELWD+SGHERYKDCRS+ YSQINGVIFVHDLSQRRT
Sbjct: 63 HITYGSPASSSSSIQGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRT 122
Query: 122 KTSLQKWAVEIATSGTFXXXXXXXXXXXXXXXXXXXXNKADVAAKEGTRGSSGNLVDAAR 181
KTSLQKWA E+A +GTF NKAD+AAKEGT+GSSGNLVDAAR
Sbjct: 123 KTSLQKWASEVAATGTFSAPLPSGGPGGLPVPYIVVGNKADIAAKEGTKGSSGNLVDAAR 182
Query: 182 QWVEKQGXXXXXXXXXXXXXXX-GGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240
WVEKQG G GGLIAAAKE RYDKEA+ KFFRMLIRRRYFSDE+P
Sbjct: 183 HWVEKQGLLPSSSEDLPLFESFPGNGGLIAAAKETRYDKEALNKFFRMLIRRRYFSDELP 242
Query: 241 APNPWSISPTH-KPIQRLDENSSDDDKFYS-SGYSSDPY---NMLPPLPAQRNXXXXXXX 295
A +PWSISP QRLDE +SDDD+FY + + DPY N +PPLPAQRN
Sbjct: 243 AASPWSISPVPTSSSQRLDEITSDDDQFYKRTSFHGDPYKYNNTIPPLPAQRNLTPPPTL 302
Query: 296 XXXXXVSVQENYNLPRFSLTGSQEISS--SARSKRTDINV 333
VS +NY +PR+SL+ QE ++ SARSKR DINV
Sbjct: 303 YPQQPVSTPDNYTIPRYSLSSVQETTNNGSARSKRMDINV 342
|
|
| TAIR|locus:2178148 AT5G09910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 193/338 (57%), Positives = 220/338 (65%)
Query: 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVK 61
FW+ER RENKE P GQ+RVLVVGDSGVGK+SLV+LIVKGSS RPSQTIGCTVGVK
Sbjct: 3 FWRERGRENKEHMVAPLCGQIRVLVVGDSGVGKSSLVHLIVKGSSIVRPSQTIGCTVGVK 62
Query: 62 HITYXXXXXXXXXXXXXXERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT 121
H+TY ERDFFVELWD+SGHERYKDCRS+ YSQINGVIFVHDLSQR T
Sbjct: 63 HLTYASPASSSSIIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRTT 122
Query: 122 KTSLQKWAVEIATSGTFXXXXXXXXXXXXXXXXXXXXNKADVAAKEGTRGSSGNLVDAAR 181
KT+LQKWA E++ +G F NKAD+AAK GT GSSGNLVDAAR
Sbjct: 123 KTNLQKWAGEVSVTGEFSAPLSSGGPGGLPVPYIVIGNKADIAAKGGTNGSSGNLVDAAR 182
Query: 182 QWVEKQGXXXXXXXXXXXXXXXGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMPA 241
WVEKQG GLI AAKEARYDKEA+ K F MLIRRRYFSDE+P+
Sbjct: 183 HWVEKQGLLPHSDELPLSESFPSNVGLIMAAKEARYDKEALTKIFHMLIRRRYFSDELPS 242
Query: 242 PNP-WSISPTHKPIQRLDENSSDDDKFY--SSGYSSDPY--NMLPPLPAQRNXXXXXXXX 296
P+ WS+S H P QRLDE +SD+D+FY +S D Y N LP Q N
Sbjct: 243 PSSAWSLS--HAPSQRLDEGTSDEDQFYKRTSLREGDAYKYNTLP----QHNLMQSPTLY 296
Query: 297 XXXXVSVQENYNLPRFSLTGSQEISS-SARSKRTDINV 333
+ NY +PRFSL+ +E S+ + RSKR DINV
Sbjct: 297 PQQPPD-RYNYAIPRFSLSSVEETSNGNGRSKRMDINV 333
|
|
| UNIPROTKB|Q5HYI8 RABL3 "Rab-like protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 43/115 (37%), Positives = 72/115 (62%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+V+VLV+GDSGVGK+SLV+L+ + PS T+GC+V V+ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPE--------E 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
+ +++ELWD+ G K R++ Y+ +NG+IFVHDL+ +++ +L++W++E
Sbjct: 58 KTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLE 112
|
|
| ZFIN|ZDB-GENE-040808-11 rabl3 "RAB, member of RAS oncogene family-like 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 216 (81.1 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 43/115 (37%), Positives = 70/115 (60%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+V+VLV+GDSGVGK+SLV+L+ + PS T+GC+V V+ Y E
Sbjct: 18 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYREGTPE--------E 69
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
+ F++ELWD+ G K R++ Y+ +NG+I VHDL+ +++ +L +W++E
Sbjct: 70 KAFYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLE 124
|
|
| UNIPROTKB|E2R3T1 RABL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 42/115 (36%), Positives = 70/115 (60%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+V+VLV+GDSGVGK+SLV+L+ + PS T+GC+V V+ Y E
Sbjct: 34 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPE--------E 85
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
+ +++ELWD+ G K R++ Y+ +NG+I VHDL+ +++ +L +W++E
Sbjct: 86 KTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLE 140
|
|
| MGI|MGI:1914907 Rabl3 "RAB, member of RAS oncogene family-like 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 41/116 (35%), Positives = 70/116 (60%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+V+VLV+GDSGVGK+SLV+L+ PS T+GC+V ++ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDYKEGTPE--------E 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+ +++ELWD+ G K R++ Y+ +NG+I VHDL+ +++ +L +W++E+
Sbjct: 58 KTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLEV 113
|
|
| UNIPROTKB|C9JXM3 RABL3 "Rab-like protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 43/115 (37%), Positives = 72/115 (62%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+V+VLV+GDSGVGK+SLV+L+ + PS T+GC+V V+ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPE--------E 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
+ +++ELWD+ G K R++ Y+ +NG+IFVHDL+ +++ +L++W++E
Sbjct: 58 KTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLE 112
|
|
| UNIPROTKB|F8WDC7 RABL3 "Rab-like protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 43/115 (37%), Positives = 72/115 (62%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+V+VLV+GDSGVGK+SLV+L+ + PS T+GC+V V+ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPE--------E 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
+ +++ELWD+ G K R++ Y+ +NG+IFVHDL+ +++ +L++W++E
Sbjct: 58 KTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLE 112
|
|
| UNIPROTKB|F8WF50 RABL3 "Rab-like protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 43/115 (37%), Positives = 72/115 (62%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+V+VLV+GDSGVGK+SLV+L+ + PS T+GC+V V+ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPE--------E 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
+ +++ELWD+ G K R++ Y+ +NG+IFVHDL+ +++ +L++W++E
Sbjct: 58 KTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLE 112
|
|
| UNIPROTKB|Q32LJ6 RABL3 "Rab-like protein 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 42/115 (36%), Positives = 70/115 (60%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXE 80
+V+VLV+GDSGVGK+SLV+L+ + PS T+GC+V V+ Y E
Sbjct: 6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPE--------E 57
Query: 81 RDFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
+ +++ELWD+ G K R++ Y+ +NG+I VHDL+ +++ +L +W++E
Sbjct: 58 KTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLE 112
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C5J9 | Y5483_ARATH | No assigned EC number | 0.7794 | 0.9969 | 0.9707 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 333 | |||
| PLN00023 | 334 | PLN00023, PLN00023, GTP-binding protein; Provision | 0.0 | |
| cd04102 | 204 | cd04102, RabL3, Rab GTPase-like family 3 (Rab-like | 1e-91 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 1e-21 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 3e-19 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 1e-17 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 4e-17 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 2e-15 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 4e-15 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 6e-13 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 1e-12 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 6e-12 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 7e-12 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-11 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 5e-11 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 6e-11 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 6e-11 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 6e-11 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 7e-11 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 1e-10 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 1e-10 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 8e-10 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 1e-09 | |
| cd04101 | 167 | cd04101, RabL4, Rab GTPase-like family 4 (Rab-like | 3e-09 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 3e-09 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 1e-08 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 1e-08 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 1e-08 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 2e-08 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 2e-08 | |
| cd04131 | 176 | cd04131, Rnd, Rho family GTPase subfamily Rnd incl | 2e-08 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-08 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 3e-08 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 4e-08 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 7e-08 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 1e-07 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 2e-07 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 2e-07 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 1e-06 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 1e-06 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 2e-06 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 4e-06 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 1e-05 | |
| cd04121 | 189 | cd04121, Rab40, Rab GTPase family 40 (Rab40) conta | 1e-05 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 2e-05 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 2e-05 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 2e-05 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 2e-05 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 2e-05 | |
| cd04172 | 182 | cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | 3e-05 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 3e-05 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 3e-05 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 3e-05 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 5e-05 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 6e-05 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 6e-05 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 2e-04 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 3e-04 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 4e-04 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 4e-04 | |
| cd04174 | 232 | cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | 5e-04 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 7e-04 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 0.001 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 0.001 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 0.001 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 0.002 | |
| cd04173 | 221 | cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | 0.003 | |
| pfam13191 | 154 | pfam13191, AAA_16, AAA ATPase domain | 0.003 | |
| pfam00350 | 168 | pfam00350, Dynamin_N, Dynamin family | 0.003 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 0.003 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 0.003 |
| >gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 619 bits (1598), Expect = 0.0
Identities = 281/336 (83%), Positives = 305/336 (90%), Gaps = 5/336 (1%)
Query: 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV 60
MFW++RERENKE NGGPP GQVRVLVVGDSGVGK+SLV+LIVKGSS +RP QTIGCTVGV
Sbjct: 1 MFWRDRERENKEQNGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGV 60
Query: 61 KHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR 120
KHITYGS GSSSNSIKGDSERDFFVELWD+SGHERYKDCRS+ YSQINGVIFVHDLSQRR
Sbjct: 61 KHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR 120
Query: 121 TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180
TKTSLQKWA E+A +GTFSAPL SGGPGGLPVPY+VIGNKAD+A KEGTRGSSGNLVDAA
Sbjct: 121 TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAA 180
Query: 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240
RQWVEKQGLLPSSEELPLTESFPG GGLIAAAKEARYDKEA++KFFRMLIRRRYFSDE+P
Sbjct: 181 RQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYFSDELP 240
Query: 241 APNPWSISPTHKPIQRLDENSSDDDKFY-SSGYSSDP--YNMLPPLPAQRNLTPPPTLYP 297
AP+PWS+SP + QRLDEN+SDDD+FY + + DP YN LPPLPAQRNLTPPPTLYP
Sbjct: 241 APSPWSLSPQ-RSSQRLDENTSDDDQFYKRTSLAGDPYKYNTLPPLPAQRNLTPPPTLYP 299
Query: 298 QQPVSVQENYNLPRFSLTGSQEISSSARSKRTDINV 333
QQPVS ENY +PRFSL+ S E S+ARSKR DINV
Sbjct: 300 QQPVSSSENYRIPRFSLSSSPES-SNARSKRMDINV 334
|
Length = 334 |
| >gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3) | Back alignment and domain information |
|---|
Score = 271 bits (695), Expect = 1e-91
Identities = 81/226 (35%), Positives = 115/226 (50%), Gaps = 33/226 (14%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
V+VLV+GDSGVGK+SLV+L+ K PS T+GC+V V+H TYG E+
Sbjct: 1 VKVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGT--------PEEK 52
Query: 82 DFFVELWDISGH----ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGT 137
F+VELWD+ G E K R++ Y+QING+IFVHDL+ +++ +L +W++E T
Sbjct: 53 TFYVELWDVGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDT 112
Query: 138 FSAPL-------ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190
F A L S G PVP +VIG K D +A R WV +
Sbjct: 113 FPAGLLVTNGDYDSEQFAGNPVPLLVIGTKLDQIP------------EAKRNWVLTRTAF 160
Query: 191 PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFS 236
S + + G + AA + + +FF +I +RYFS
Sbjct: 161 LSEDFNAEEINLDCTNGRLLAAGSSN--AVKLSRFFDKVIEKRYFS 204
|
RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 89.4 bits (223), Expect = 1e-21
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 35/171 (20%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+++++GDSGVGKTSL+ V FS + TIG K I +K
Sbjct: 1 FKIVLIGDSGVGKTSLLLRFVDNK-FSENYKSTIGVDFKSKTIEVDG-----KKVK---- 50
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
+++WD +G ER++ S Y +G I V+D++ R + +L KW E+ +
Sbjct: 51 ----LQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPN- 105
Query: 141 PLASGGPGGLPVPYVVIGNKAD-VAAKEGTRGSSGNLVDAARQWVEKQGLL 190
+P +++GNK+D ++ + + A+Q+ ++ GLL
Sbjct: 106 -----------IPIILVGNKSDLEDERQVST-------EEAQQFAKENGLL 138
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 3e-19
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 26/167 (15%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++V+ +G+SGVGK+ ++ +G S+ TIG GVK S++ R
Sbjct: 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVK----------KVSVRNKEVR 50
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
V +D+SGH Y + R+ Y GV+ V+D++ R++ +L W E+ G
Sbjct: 51 ---VNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGG---- 103
Query: 142 LASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQG 188
+ VV NK D+ R S D R W E +G
Sbjct: 104 ---PHGNMENIVVVVCANKIDLTKH---RAVS---EDEGRLWAESKG 141
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 1e-17
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 41/174 (23%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+++++GDSGVGK+SL++ G FS + TIG K I +K
Sbjct: 1 FKIILIGDSGVGKSSLLSRFTDG-KFSEQYKSTIGVDFKTKTIEVD-----GKRVK---- 50
Query: 81 RDFFVELWDISGHERYKDCRSI---LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGT 137
+++WD +G ER+ RSI Y G + V+D++ R + +L+ W E+
Sbjct: 51 ----LQIWDTAGQERF---RSITSSYYRGAVGALLVYDITNRESFENLENWLKELR---E 100
Query: 138 FSAPLASGGPGGLPVPYVVIGNKADVAAK-EGTRGSSGNLVDAARQWVEKQGLL 190
+++P V +++GNK+D+ + + +R + A + E+ GL
Sbjct: 101 YASP---------NVVIMLVGNKSDLEEQRQVSR-------EEAEAFAEEHGLP 138
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 4e-17
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 24/149 (16%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
+++L++GDSGVGK+SL+ + S TIG VK +T +
Sbjct: 1 LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVD-------------GK 47
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
+ +WD +G ER++ S Y GVI V+D+++R T +L W E+ T T
Sbjct: 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPD- 106
Query: 142 LASGGPGGLPVPYVVIGNKADVAAKEGTR 170
+++GNK D +E TR
Sbjct: 107 ----------AVKMLVGNKIDKENREVTR 125
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-15
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ---TIGCTVGVKHITYGSSGSSSNSIKGDS 79
++++VGD GVGK+SL+ + F P + TIG K I ++K
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNK-F--PEEYIPTIGVDFYTKTIEVDG-----KTVK--- 49
Query: 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G ER++ R + Y G + V+D++ R + +++KW EI
Sbjct: 50 -----LQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILR----- 99
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAKE 167
A VP V++GNK D+ +
Sbjct: 100 --HADEN-----VPIVLVGNKCDLEDQR 120
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-15
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 24/142 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKG--SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+VLV+GD GVGKTS++ V G S + TIG +K I + D
Sbjct: 2 KVLVIGDLGVGKTSIIKRYVHGVFSQHYKA--TIGVDFALKVIEW------------DPN 47
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
++LWDI+G ER+ + Y G I V D+++ T ++ KW ++ + T
Sbjct: 48 TVVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTL-- 105
Query: 141 PLASGGPGGLPVPYVVIGNKAD 162
P G P+P +++ NK D
Sbjct: 106 ------PNGEPIPALLLANKCD 121
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 6e-13
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 31/168 (18%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++++GDS VGKT +V G+ R TIG +K + I+G +
Sbjct: 5 KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTL----------EIQGKRVK- 53
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ER++ Y NG I +D+++R + S+ W E+ + A
Sbjct: 54 --LQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEV---EKYGAS- 107
Query: 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190
V ++IGNK D+ + L + A E G+L
Sbjct: 108 --------NVVLLLIGNKCDLEEQREV------LFEEACTLAEHYGIL 141
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 1e-12
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 26/145 (17%)
Query: 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGD 78
+ +++V+GD GVGKT+L+N +V + T+G
Sbjct: 3 MKEFKIVVLGDGGVGKTTLLNRLVGDE----FPEGYPPTIGNLDPA---------KTIEP 49
Query: 79 SERDFFVELWDISGHERYKDCRSILYSQINGVIFVHD-LSQRRTKTSLQKWAVEIATSGT 137
R+ ++LWD +G E Y+ R Y NG++ V+D + + ++W E+
Sbjct: 50 YRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP 109
Query: 138 FSAPLASGGPGGLPVPYVVIGNKAD 162
P+ +++GNK D
Sbjct: 110 DDVPI------------LLVGNKID 122
|
Length = 219 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 6e-12
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 30/163 (18%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++V+GDS VGKT L G R TIG + +++ D ER
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRER------------TVEIDGER- 50
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
V+LWD +G ER++ +S++ Y ++ V+FV+D++ + SL W E
Sbjct: 51 IKVQLWDTAGQERFR--KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-- 106
Query: 140 APLASGGPGGLPVPYVVIGNKADV-AAKEGTRGSSGNLVDAAR 181
VP +++GNK D+ + + DA
Sbjct: 107 ---------PNEVPRILVGNKCDLREQIQVPTDLAQRFADAHS 140
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 7e-12
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 27/169 (15%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+++GDSGVGKTSL+N V ++ TIG K +T + R
Sbjct: 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVT----------VDD---RL 48
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ER++ Y + + V+D++ ++ SL W E + P
Sbjct: 49 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPE 108
Query: 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLP 191
P+VV+GNK D+ K R S A+QW + +G +P
Sbjct: 109 N--------FPFVVLGNKIDLEEK---RQVS---TKKAQQWCKSKGNIP 143
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-11
Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 37/146 (25%)
Query: 25 LVVGDSGVGKTSLVNLIVKGSSF---SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
+VVG GVGK+SL+N ++ G P T V VK + G
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKG--------------- 45
Query: 82 DFFVELWDISGHERYKD-----CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSG 136
+ L D G + + +L + ++ V D + R S + + I
Sbjct: 46 KVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRE---SEEDAKLLILRRL 102
Query: 137 TFSAPLASGGPGGLPVPYVVIGNKAD 162
+P +++GNK D
Sbjct: 103 -----------RKEGIPIILVGNKID 117
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 5e-11
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 20/168 (11%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
+++L +GDSGVGKT+ + + T+G K + Y S G + G + R
Sbjct: 5 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGP--DGTSGKAFR 62
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
++LWD +G ER++ + + G + + DL+ ++ +++ W ++ P
Sbjct: 63 -VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENP 121
Query: 142 LASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL 189
V+IGNKAD+ R S AR+ +K G+
Sbjct: 122 -----------DIVLIGNKADL---PDQREVS---ERQARELADKYGI 152
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 6e-11
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 23/138 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+V+GD G GK+SL++ +V G P + G T+ V + + GD+
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLE----------VDGDTGL- 49
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+ +WD G E K I + ++ V+DL+ R + + + A L
Sbjct: 50 --LNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSR----------LIAWL 97
Query: 143 ASGGPGGLPVPYVVIGNK 160
+ G +P +++GNK
Sbjct: 98 PNLRKLGGKIPVILVGNK 115
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 6e-11
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 31/184 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
R+L++GDSGVGKT L+ S TIG +K I + G R
Sbjct: 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI----------EVDGIKVR- 50
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ERY+ Y + G+ V+D+S R+ + KW ++
Sbjct: 51 --IQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY------- 101
Query: 143 ASGGPGGLPVPYVVIGNKADVA-AKEGTRGSSGNLVDAARQ-WVEKQGLLPSSEELPLTE 200
P G V ++IGNKAD ++ L + E + E
Sbjct: 102 ---APEG--VQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSA----CTNKNIKE 152
Query: 201 SFPG 204
SF
Sbjct: 153 SFTR 156
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 6e-11
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 35/172 (20%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKG--SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGD 78
Q +++++GDS VGK+S+V VK S TIG + + ++K
Sbjct: 1 QFKLVLLGDSSVGKSSIVLRFVKNEFSENQES--TIGAAFLTQTVNLD-----DTTVK-- 51
Query: 79 SERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTF 138
F E+WD +G ERY+ + Y I V+D++ + + W E
Sbjct: 52 ----F--EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKE------- 98
Query: 139 SAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190
L GP + + + GNKAD+ E R S + A+++ ++ GLL
Sbjct: 99 ---LQEHGPPNIVI--ALAGNKADL---ESKRQVS---TEEAQEYADENGLL 139
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-11
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 29/146 (19%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPS--QTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++L++GDSGVGK+ L+ + S F+ PS TIG ++ I IK
Sbjct: 5 KLLLIGDSGVGKSCLLLRFSEDS-FN-PSFISTIGIDFKIRTIELDG-----KKIK---- 53
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
+++WD +G ER++ + Y G+I V+D++ ++ +++ W I
Sbjct: 54 ----LQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDE------ 103
Query: 141 PLASGGPGGLPVPYVVIGNKADVAAK 166
AS V +++GNK D+ K
Sbjct: 104 -HASED-----VERMLVGNKCDMEEK 123
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-10
Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++V+++GD GVGK+SL+N V ++ TIG K + D
Sbjct: 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV------------DGHF 53
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
+++WD +G ER++ R+ Y + + + ++ +L W E P
Sbjct: 54 -VTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEP 112
Query: 142 LASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSE 194
+ P+V++GNK D+ ++ + + A+ W G P E
Sbjct: 113 ES--------FPFVILGNKIDIPERQVS-------TEEAQAWCRDNGDYPYFE 150
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 1e-10
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 17/112 (15%)
Query: 23 RVLVVGDSGVGKTSL-VNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++L++GDSGVGK+SL V+ I SS + TIG +K +T G +
Sbjct: 16 KILLIGDSGVGKSSLLVSFI--SSSVEDLAPTIGVDFKIKQLTVGG-------------K 60
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK-WAVEI 132
+ +WD +G ER++ S Y G+I V+D+++R T T+L W E+
Sbjct: 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEV 112
|
Length = 211 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 8e-10
Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 33/154 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSER 81
+++++GDSGVGK++L++ + F+ S+ TIG + I +IK
Sbjct: 5 KIVLIGDSGVGKSNLLSRFTRN-EFNLDSKSTIGVEFATRTIQID-----GKTIK----- 53
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
++WD +G ERY+ S Y G + V+D++++ T ++++W E
Sbjct: 54 ---AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKE---------- 100
Query: 142 LASGGPGGLPVPYVVIGNKAD------VAAKEGT 169
L + + +++GNK+D V +E
Sbjct: 101 LRDHADSNIVI--MLVGNKSDLRHLRAVPTEEAK 132
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-09
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 27/147 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKG--SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGD 78
Q R++V+GDS VGK+SL+ +G + S P TVGV S I+ +
Sbjct: 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDP------TVGVDFF--------SRLIEIE 47
Query: 79 SERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTF 138
++LWD +G ER++ Y GV+ V D++ R + + W E +
Sbjct: 48 PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP 107
Query: 139 SAPLASGGPGGLPVPYVVIGNKADVAA 165
P+ ++++G+K D+ +
Sbjct: 108 HRPV-----------FILVGHKCDLES 123
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4) | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-09
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 28/148 (18%)
Query: 23 RVLVVGDSGVGKTSLVNLI-VKGSSFSRP-SQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ VVGD VGK++LV + G++F + + T GC + VK + + S
Sbjct: 2 QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDS--------- 52
Query: 81 RDFFVEL--WDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTF 138
VEL +D +G E + D ++ Q V V+D++ + + +W + T
Sbjct: 53 ----VELFIFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSH- 107
Query: 139 SAPLASGGPGGLPVPYVVIGNKADVAAK 166
GL P V++GNK D+ +
Sbjct: 108 ----------GLHTPGVLVGNKCDLTDR 125
|
RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-09
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 33/151 (21%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+V+++VVGD G GKT L+ + +G SF P + + TV ++T +++ +
Sbjct: 3 KVKIVVVGDGGCGKTCLLMVYAQG-SF--PEEYVP-TVFENYVT---------TLQVPNG 49
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ----KWAVEIATSG 136
+ + LWD +G E Y R + Y ++ ++ + + TSL KW E+
Sbjct: 50 KIIELALWDTAGQEDYDRLRPLSYPDVDVILICYSVD---NPTSLDNVEDKWYPEVN--- 103
Query: 137 TFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167
F PG P V++G K D+ +
Sbjct: 104 HFC-------PG---TPIVLVGLKTDLRKDK 124
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-08
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 25/141 (17%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
+ L++G +G GK+ L++ ++ + TIG G + + G S+K
Sbjct: 1 FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGK-----SVK----- 50
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
+++WD +G ER++ Y G + V+D++ R + +L W + T
Sbjct: 51 ---LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDART------- 100
Query: 142 LASGGPGGLPVPYVVIGNKAD 162
LAS P + +++GNK D
Sbjct: 101 LAS--PD---IVIILVGNKKD 116
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-08
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 37/171 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+ +++GD GVGK+ L++ + + TIG G + I + IK
Sbjct: 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-----NGQKIK------ 52
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ER++ Y G + V+D+++R T L W +
Sbjct: 53 --LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR--------- 101
Query: 143 ASGGPGGLPVPYVV---IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190
L P V IGNKAD+ E R + + A+Q+ ++ GLL
Sbjct: 102 ------NLTNPNTVIFLIGNKADL---EAQRDVT---YEEAKQFADENGLL 140
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-08
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 25/144 (17%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++++G++GVGKT LV +G P Q G T+GV + + IKG+ +
Sbjct: 9 KIVLIGNAGVGKTCLVRRFTQG--LFPPGQ--GATIGVDFMI------KTVEIKGEKIK- 57
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ER++ Y N +I +D++ + L +W EI
Sbjct: 58 --LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--- 112
Query: 143 ASGGPGGLPVPYVVIGNKADVAAK 166
V +++GNK D+A +
Sbjct: 113 ---------VITILVGNKIDLAER 127
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-08
Identities = 30/110 (27%), Positives = 65/110 (59%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++++GDSGVGK+++++ + + F S++ T+GV+ T + ++G + +
Sbjct: 14 KIVLIGDSGVGKSNILSRFTR-NEFCLESKS---TIGVEFAT------RTLQVEGKTVK- 62
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++WD +G ERY+ S Y G + V+D+++R+T ++Q+W E+
Sbjct: 63 --AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLREL 110
|
Length = 216 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-08
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 27/142 (19%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+V+++G+ VGKTSLV V+ F+ + T + K + G
Sbjct: 1 FKVVLLGEGRVGKTSLVLRYVENK-FNEKHESTTQASFFQKTVNIG-------------G 46
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
+ + +WD +G ERY I Y +G I V+D++ + ++KW E+ +
Sbjct: 47 KRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNI 106
Query: 141 PLASGGPGGLPVPYVVIGNKAD 162
L V++GNK D
Sbjct: 107 SL------------VIVGNKID 116
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8 | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-08
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 19/113 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++++VGDS GKT+L+ + K S T+ + + S + D +R
Sbjct: 3 KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-------------FENYTASFEVDKQR- 48
Query: 83 FFVEL--WDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTS-LQKWAVEI 132
+EL WD SG Y + R + Y + V+ D+S+ T S L+KW E+
Sbjct: 49 --IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEV 99
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 34/147 (23%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+++++VGD VGK++L+N ++ + I
Sbjct: 2 IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDG------------- 48
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR--RTKTSLQKWAVEI---ATS 135
+ + L D +G E Y R + Y + + V D+ + L+K EI A S
Sbjct: 49 KTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES 108
Query: 136 GTFSAPLASGGPGGLPVPYVVIGNKAD 162
G VP +++GNK D
Sbjct: 109 G---------------VPIILVGNKID 120
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 3e-08
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 25/141 (17%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++G+S VGKTS + S S T+G VK + ++
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRN-------------DKR 49
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ERY+ + Y G I ++D++ + ++Q W+ +I T +A +
Sbjct: 50 IKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQV 109
Query: 143 ASGGPGGLPVPYVVIGNKADV 163
+++GNK D+
Sbjct: 110 ------------ILVGNKCDM 118
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 35/150 (23%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSER 81
+++ +GD VGKTS++ + +F Q TIG K + ++
Sbjct: 2 KLVFLGDQSVGKTSIITRFM-YDTFDNQYQATIGIDFLSKTMYV-------------DDK 47
Query: 82 DFFVELWDISGHERYKDCRSILYSQING---VIFVHDLSQRRTKTSLQKWAVEI-ATSGT 137
++LWD +G ER+ RS++ S I + V+D++ R++ + KW ++ G
Sbjct: 48 TVRLQLWDTAGQERF---RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN 104
Query: 138 FSAPLASGGPGGLPVPYVVIGNKADVAAKE 167
V V++GNK D++ K
Sbjct: 105 -------------DVIIVLVGNKTDLSDKR 121
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-08
Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 30/146 (20%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTV-GVKHITYGSSGSSSNSIKGDSER 81
++++VGD G GKT+ V + G + T+G V + T I+
Sbjct: 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNR------GKIR----- 50
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI-ATSGTFSA 140
+WD +G E++ R Y Q I + D++ R T ++ W ++
Sbjct: 51 ---FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI-- 105
Query: 141 PLASGGPGGLPVPYVVIGNKADVAAK 166
P V+ GNK D+ +
Sbjct: 106 ------------PIVLCGNKVDIKDR 119
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 28/147 (19%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPS-QTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++L++GDSGVGK+SL+ L ++FS TIG ++ + I G+ +
Sbjct: 8 KLLIIGDSGVGKSSLL-LRFADNTFSGSYITTIGVDFKIRTV----------EINGERVK 56
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
+++WD +G ER++ S Y +GVI V+D++ + ++++W EI +
Sbjct: 57 ---LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD--- 110
Query: 142 LASGGPGGLPVPYVVIGNKADVAAKEG 168
V V++GNK D ++
Sbjct: 111 ----------VCKVLVGNKNDDPERKV 127
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 14/112 (12%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSE 80
V+V+++G VGKTSLV V P Q TIG K + G E
Sbjct: 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVG-------------E 47
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
R + +WD +G ERY+ I Y I +DL+ + + W E+
Sbjct: 48 RVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL 99
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++GDSGVGK+ L+ + TIG V K T G ++K
Sbjct: 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIG--VDFKIRTIELDG---KTVK------ 52
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI---ATSGTFS 139
+++WD +G ER++ S Y +G+I V+D++ + + ++++W EI A+
Sbjct: 53 --LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--- 107
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
V +++GNK D+ K
Sbjct: 108 ------------VNKLLVGNKCDLTDK 122
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
V+++++GDS VGK+ LV + + T T+ KH ++ +I
Sbjct: 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTL-YKH----NAKFEGKTIL----- 50
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
V+ WD +G ER++ + Y + + I V D++++ T +L KW E+
Sbjct: 51 ---VDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEEL 98
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 43/150 (28%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
R+L++G G GKT+++ + K TIG V+ + Y +
Sbjct: 1 RILMLGLDGAGKTTILYKL-KLGEVVTTIPTIG--FNVETVEYK---------------N 42
Query: 83 FFVELWDISGHERYKDCRSI---LYSQINGVIFVHDLSQRR----TKTSLQKWAVEIATS 135
+WD+ G ++ R + Y +G+IFV D S R K L K
Sbjct: 43 VKFTVWDVGGQDKI---RPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHK-------- 91
Query: 136 GTFSAPLASGGPGGLPVPYVVIGNKADVAA 165
+ G P +++ NK D+
Sbjct: 92 -LLNEEELKG------APLLILANKQDLPG 114
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-06
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 25/140 (17%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+++G GVGKTSL+ + T+G +K + ++G R
Sbjct: 2 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTV----------ELRGKKIR- 50
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ER+ S Y G+I V+D++++ T L KW I + A L
Sbjct: 51 --LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAEL 108
Query: 143 ASGGPGGLPVPYVVIGNKAD 162
+++GNK D
Sbjct: 109 ------------LLVGNKLD 116
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-06
Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 24/152 (15%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V++VGDSGVGKT L+ + K +F I TVG ++ + D +
Sbjct: 2 KVMLVGDSGVGKTCLL-VRFKDGAF-LAGSFIA-TVG--------IQFTNKVVTVDGVK- 49
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ER++ Y + ++ ++D++ + + +++ W EI
Sbjct: 50 VKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSD--- 106
Query: 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174
V +++GNKAD++ + + G
Sbjct: 107 ---------VVIMLLGNKADMSGERVVKREDG 129
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
+++ ++GD+ +GKTSL+ V+G QT+G K I+ +
Sbjct: 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGT------------- 47
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+ +WD+ G + + ++ ++F+ DL+++ T S+++W
Sbjct: 48 EITFSIWDLGGQREFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEW 94
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 40/172 (23%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++ L+VGDS VGK ++ + GS+ S +G I Y ++ +I D R
Sbjct: 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMG-------IDYKTT-----TILLDGRR 54
Query: 82 DFFVELWDISGHERYKDC---RSILYSQ-INGVIFVHDLSQRRTKTSLQKWAVEIATSGT 137
++LWD SG R+ C RS YS+ G+I V+D++ R + + +W EI
Sbjct: 55 -VKLQLWDTSGQGRF--CTIFRS--YSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH-- 107
Query: 138 FSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL 189
PG VP +++GN+ +A K + A+ + E+ G+
Sbjct: 108 --------APG---VPKILVGNRLHLAFKRQVA------TEQAQAYAERNGM 142
|
The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 25/112 (22%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER- 81
+V+VVGD VGKT L+N K F + + T+GV + ER
Sbjct: 2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKA---TIGVDF---------------EMERF 42
Query: 82 -----DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
F ++LWD +G ER+K S Y +I V DL+ + ++W
Sbjct: 43 EVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQW 94
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++V+VVG+ VGK+S++ VKG +TIG K I S
Sbjct: 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDE----------- 49
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
D + LWD +G E + Y I V + R + +++ W
Sbjct: 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESW 96
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 38/143 (26%)
Query: 26 VVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFV 85
VVGD VGKT L+ + +F P + TV + ++ D + V
Sbjct: 3 VVGDGAVGKTCLLIVYTTN-AF--PEDYVP-TVFENYSA---------DVEVDGKP---V 46
Query: 86 EL--WDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ----KWAVEIATSGTFS 139
EL WD +G E Y R + Y + + + S + KW E+ F
Sbjct: 47 ELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSP---ASFENVKEKWYPEVK---HFC 100
Query: 140 APLASGGPGGLPVPYVVIGNKAD 162
P VP +++G K D
Sbjct: 101 -------PN---VPIILVGTKLD 113
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 35/147 (23%)
Query: 25 LVVGDSGVGKTSLVNLIVKGSSFSRPSQ--TIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++GD+GVGK+ L+ L F +P TIG G + IT I G +
Sbjct: 8 IIIGDTGVGKSCLL-LQFTDKRF-QPVHDLTIGVEFGARMIT----------IDGKQIK- 54
Query: 83 FFVELWDISGHERYKDCRSI---LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G E + RSI Y G + V+D+++R T L W + +
Sbjct: 55 --LQIWDTAGQESF---RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN 109
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
+ ++IGNK D+ ++
Sbjct: 110 MTI------------MLIGNKCDLESR 124
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 26/147 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ ++++VGD GVGKT+ V + G + T+G V V + + ++
Sbjct: 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLG--VEVHPLKFYTNC----------- 55
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
+WD +G E++ R Y + I + D++ R T ++ W +I
Sbjct: 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE--- 112
Query: 141 PLASGGPGGLPVPYVVIGNKADVAAKE 167
+P V++GNK DV ++
Sbjct: 113 ----------NIPIVLVGNKVDVKDRQ 129
|
Length = 215 |
| >gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 3e-05
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ +++VVGDS GKT+L+++ K T+ + + S + D++
Sbjct: 5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-------------FENYTASFEIDTQ 51
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTS-LQKWAVEI 132
R + LWD SG Y + R + Y + V+ D+S+ T S L+KW EI
Sbjct: 52 R-IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 103
|
Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 29/148 (19%)
Query: 22 VRVLVVGDSGVGKTSLV-NLIVKGSSFSRPSQTIGCTVGVKHIT----YGSSGSSSNSIK 76
+++V+G G GKT+ V L K + + G + T +GS +
Sbjct: 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS-----IELD 65
Query: 77 GDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSG 136
D+ F G ER+K IL G I + D S R T + ++ TS
Sbjct: 66 EDTGVHLF----GTPGQERFKFMWEILSRGAVGAIVLVDSS--RPITFHAEEIIDFLTSR 119
Query: 137 TFSAPLASGGPGGLPVPYVVIGNKADVA 164
P+P VV NK D+
Sbjct: 120 N-------------PIPVVVAINKQDLF 134
|
Length = 187 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-05
Identities = 34/152 (22%), Positives = 51/152 (33%), Gaps = 48/152 (31%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSR---PSQTI----GCTVGVKHITYGSSGSSSNS 74
++++VVGD VGKT L+ F P T+ V V
Sbjct: 1 IKIVVVGDGAVGKTCLLISYTTNK-FPTEYVP--TVFDNYSANVTVDGKQVN-------- 49
Query: 75 IKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ----KWAV 130
+ LWD +G E Y R + Y Q + + + +S + KW
Sbjct: 50 ----------LGLWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSP---SSFENVKTKWYP 96
Query: 131 EIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
EI P VP +++G K D
Sbjct: 97 EIKH----YCP---------NVPIILVGTKID 115
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 25/118 (21%)
Query: 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGD 78
+ Q V++ G GKTSL L+ G+ + + T S S + K
Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGT--VKKTVT--------------SQEPSAAYKYM 44
Query: 79 SERDFFVELWDISGHE--RYKDCRSILYS-QINGVIFVHDLSQRRTKTSLQKWAVEIA 133
+ F L D GH R K +I S + G++FV D T+ K + A
Sbjct: 45 LHKGFSFTLIDFPGHVKLRQKLLETIKDSSSLRGIVFVVD------STAFPKEVTDTA 96
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-05
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 25/116 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTV--GVKHITYGSSGSSSNSIKGDSE 80
+V+V+GD GKTSL+N+ +G Q TV H + +++
Sbjct: 2 KVVVLGDGACGKTSLLNVFTRGYF----PQVYEPTVFENYIHDIF----VDGLAVE---- 49
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ----KWAVEI 132
+ LWD +G E + RS+ Y+ + ++ + SL+ KW EI
Sbjct: 50 ----LSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNP---DSLENVESKWLAEI 98
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 26/142 (18%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83
VL++G S GKT+L + G T S + S +S +
Sbjct: 3 VLLLGPSDSGKTALFTKLTTGK---------------VRSTVTSIEPNVASFYSNSSKGK 47
Query: 84 FVELWDISGHERYKDCRSILYSQ-INGVIFVHD-LSQRRTKTSLQKWAVEIATSGTFSAP 141
+ L D+ GHE+ +D + ++FV D + ++ + ++ +I T
Sbjct: 48 KLTLVDVPGHEKLRDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKN 107
Query: 142 LASGGPGGLPVPYVVIGNKADV 163
+P ++ NK D+
Sbjct: 108 ---------KIPILIACNKQDL 120
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 6e-05
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 41/173 (23%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ--TIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ +++GD+GVGK+ L+ L F +P TIG G + IT + IK
Sbjct: 8 KYIIIGDTGVGKSCLL-LQFTDKRF-QPVHDLTIGVEFGARMITI-----DNKPIK---- 56
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW---AVEIATSGT 137
+++WD +G E ++ Y G + V+D+++R T L W A + A +
Sbjct: 57 ----LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN- 111
Query: 138 FSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190
+ ++IGNK D+A + G Q+ ++ GL+
Sbjct: 112 --------------MTIMLIGNKCDLAHRRAVSTEEG------EQFAKEHGLI 144
|
Length = 210 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 25/143 (17%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++++VG GVGKTSL + G F + T G+ I +
Sbjct: 2 AKLMLVGQGGVGKTSLCKQL-IGEKFDGDESS---THGIN--------VQDWKIPAPERK 49
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
+ +WD G E Y + + + V DL + + W +I G S
Sbjct: 50 KIRLNVWDFGGQEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVS-- 107
Query: 142 LASGGPGGLPVPYVVIGNKADVA 164
P +++G D +
Sbjct: 108 -----------PVILVGTHIDES 119
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 46/150 (30%)
Query: 26 VVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84
+VG GKT+LVN+I FS + T+G ++ +T G+
Sbjct: 4 LVGLQNSGKTTLVNVI-ASGQFSEDTIPTVG--FNMRKVTKGNV---------------T 45
Query: 85 VELWDISGHERYKD-----CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATS---G 136
+++WD+ G R++ CR +N +++V D + R +K E+A +
Sbjct: 46 IKVWDLGGQPRFRSMWERYCR-----GVNAIVYVVDAADR------EKL--EVAKNELHD 92
Query: 137 TFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
P G +P +V+GNK D+
Sbjct: 93 LLEKPSLEG------IPLLVLGNKNDLPGA 116
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGS 45
VR++++GD GVGK+SL+ +V
Sbjct: 3 VRIVLIGDEGVGKSSLIMSLVSEE 26
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 35/149 (23%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++++V+GD GKTSL+ + QTIG + IT S + +
Sbjct: 1 IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVT--------- 51
Query: 82 DFFVELWDISGH-------ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIAT 134
+++WDI G ++Y +Y V V+D++ ++ +L+ W
Sbjct: 52 ---LQVWDIGGQQIGGKMLDKY------IYGA-QAVCLVYDITNSQSFENLEDW------ 95
Query: 135 SGTFSAPLASGGPGGLPVPYVVIGNKADV 163
S V++GNK D+
Sbjct: 96 ---LSVVKKVNEESETKPKMVLVGNKTDL 121
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 5e-04
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 6 RERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITY 65
+ER N + P + ++++VGD GKT+++ ++ K +T TV +
Sbjct: 2 KERRNPQ----PLVVRCKLVLVGDVQCGKTAMLQVLAKDCY----PETYVPTVFENY--- 50
Query: 66 GSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT-KTS 124
+ ++ + +R + LWD SG Y + R + YS + V+ D+S+ ++
Sbjct: 51 ------TACLETEEQR-VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSA 103
Query: 125 LQKWAVEI 132
L+KW EI
Sbjct: 104 LKKWRAEI 111
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 43/149 (28%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
+R+L++G GKT+++ + K TIG V+ +TY +
Sbjct: 15 MRILILGLDNAGKTTILYKL-KLGEIVTTIPTIGFN--VETVTY---------------K 56
Query: 82 DFFVELWDISGHE---RYKDCRSILYSQINGVIFVHDLSQRR----TKTSLQKWAVEIAT 134
+ +WD+ G E + + VIFV D + R K L E
Sbjct: 57 NVKFTVWDVGGQESLRPLWRN---YFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEEL 113
Query: 135 SGTFSAPLASGGPGGLPVPYVVIGNKADV 163
+ P +++ NK D+
Sbjct: 114 AD---------------APLLILANKQDL 127
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83
+LV+G GKT+++N + ++ SQ I TVG ++ G+ S
Sbjct: 2 ILVLGLDNSGKTTIINQLKPSNA---QSQNIVPTVGF-NVESFKKGNLS----------- 46
Query: 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR 119
+D+SG +Y+ Y I G+IFV D S R
Sbjct: 47 -FTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDR 81
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.001
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 30/141 (21%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++V+++GD VGKTSL++ ++ F T+G +K +G
Sbjct: 1 LKVVLLGDMNVGKTSLLHRYMERR-FKDTVSTVGGAFYLKQ--WGP-------------- 43
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
+ + +WD +G E++ S+ VI +D+S ++ L + + T +
Sbjct: 44 -YNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEEL--EDRFLGLTDTANED 100
Query: 142 LASGGPGGLPVPYVVIGNKAD 162
+ V+GNK D
Sbjct: 101 CL----------FAVVGNKLD 111
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.001
Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 40/148 (27%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++++VGD G GKT+ V + G + TIG V D
Sbjct: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--------------------HPLD 54
Query: 83 FFV-------ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATS 135
FF WD +G E++ R Y I + D++ R T ++ W ++
Sbjct: 55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CR 113
Query: 136 GTFSAPLASGGPGGLPVPYVVIGNKADV 163
+ +P V+ GNK DV
Sbjct: 114 VCEN------------IPIVLCGNKVDV 129
|
Length = 219 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.002
Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 27/161 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++V+G GVGK++L V+G + TI S I+ D ++
Sbjct: 3 KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTI-------------EDSYRKQIEVDCQQ- 48
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+E+ D +G E++ R + G V+ ++ +++ LQ +I
Sbjct: 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTED-- 106
Query: 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 183
VP +++GNK D+ + G + ARQW
Sbjct: 107 ---------VPMILVGNKCDLEDERVVSKEEG--QNLARQW 136
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | Back alignment and domain information |
|---|
Score = 38.1 bits (88), Expect = 0.003
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++VVGD+ GKT+L+++ K T + ++S I D R
Sbjct: 3 KIVVVGDTQCGKTALLHVFAKD-----------NYPESYVPTVFENYTASFEI--DKHR- 48
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTS-LQKWAVE 131
+ +WD SG Y + R + Y + V+ D+S+ T S L+KW E
Sbjct: 49 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGE 98
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221 |
| >gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.003
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Query: 6 RERENKEL--------NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSF 47
RE E + L +GGPP+ VL+ G SG GKTSL+ +++G
Sbjct: 5 REEELERLLDALRRARSGGPPS----VLLTGPSGTGKTSLLRELLEGLLV 50
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154 |
| >gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83
+ VVGD GK+S++N ++ G P T + G + +D
Sbjct: 1 IAVVGDQSAGKSSVLNALL-GRDIL-PRGPGPTTRRPLVLRLGEEPGAIPGAVKVEYKDG 58
Query: 84 FVELWDIS 91
+ D S
Sbjct: 59 LKKFEDFS 66
|
Length = 168 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.003
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 29/142 (20%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++V+G GVGK++L V G TI +Y I D E
Sbjct: 1 KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTI-------EDSY------RKQIVVDGE-T 46
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI--ATSGTFSA 140
+ +++ D +G E + R +G I V+ ++ R + ++ +I
Sbjct: 47 YTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKED-- 104
Query: 141 PLASGGPGGLPVPYVVIGNKAD 162
VP V++GNK D
Sbjct: 105 -----------VPIVLVGNKCD 115
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.003
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+V+G GVGK++L V G+ + TI K I SS S
Sbjct: 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSV----------- 50
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+E+ D +G E++ R + G I V+ L ++T ++ +I
Sbjct: 51 --LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRV------- 101
Query: 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 183
G VP +++GNK D+ ++ + G + A +W
Sbjct: 102 ----KGYEKVPIILVGNKVDLESEREVSSAEGRAL--AEEW 136
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 333 | |||
| PLN00023 | 334 | GTP-binding protein; Provisional | 100.0 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 100.0 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.98 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.98 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.98 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.97 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.97 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.97 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.97 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.97 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.97 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.97 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.97 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.97 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.97 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.97 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.97 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.97 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.97 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.97 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.97 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.97 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.97 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.97 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.97 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.97 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.97 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.97 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.97 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.97 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.97 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.97 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.97 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.97 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.97 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.97 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.97 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.97 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.97 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.97 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.97 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.96 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.96 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.96 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.96 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.96 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.96 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.96 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.96 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.96 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.96 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.96 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.96 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.96 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.96 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.96 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.96 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.96 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.96 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.96 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.95 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.95 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.95 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.95 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.95 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.95 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.95 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.95 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.95 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.95 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.95 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.94 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.94 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.94 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.94 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.94 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.94 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.94 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.94 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.94 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.94 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.94 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.94 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.94 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.93 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.93 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.93 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.93 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.93 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.93 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.92 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.92 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.92 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.91 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.91 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.91 | |
| PTZ00099 | 176 | rab6; Provisional | 99.9 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.9 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.9 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.89 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.89 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.89 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.88 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.88 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.88 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.88 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.87 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.87 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.87 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.87 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.86 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.86 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.85 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.85 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.85 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.85 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.85 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.85 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.83 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.83 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.83 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.83 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.82 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.82 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.82 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.82 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.82 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.82 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.81 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.81 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.81 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.81 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.81 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.81 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.8 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.8 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.8 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.8 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.8 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.79 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.79 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.79 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.79 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.78 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.78 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.78 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.77 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.77 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.76 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.76 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.76 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.76 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.76 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.75 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.75 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.75 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.75 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.74 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.74 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.74 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.74 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.74 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.74 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.74 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.72 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.72 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.72 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.71 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.71 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.7 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.7 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.7 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.7 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.7 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.7 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.69 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.69 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.68 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.68 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.67 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.66 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.66 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.65 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.65 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.64 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.63 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.63 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.63 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.62 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.62 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.62 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.62 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.61 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.61 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.6 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.58 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.57 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.56 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.54 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.54 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.54 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.53 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.53 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.52 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.51 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.51 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.51 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.5 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.49 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.49 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.49 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.48 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.48 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.48 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.46 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.46 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.45 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.45 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.45 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.44 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.44 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.44 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.43 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.43 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.42 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.4 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.36 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.35 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.35 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.35 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.34 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.33 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.33 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.32 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.32 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.31 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.3 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.3 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.28 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.28 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.27 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.27 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.25 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.25 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.24 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.23 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.23 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.22 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.18 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.18 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.17 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.15 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.09 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.08 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.07 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.07 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.05 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.04 | |
| PRK13768 | 253 | GTPase; Provisional | 99.04 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.03 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.02 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.0 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.0 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 98.98 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 98.98 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.94 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 98.93 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 98.93 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.92 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.9 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.88 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 98.85 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.84 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 98.84 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 98.83 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.81 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.78 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.74 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 98.74 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 98.74 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 98.73 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 98.73 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.72 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 98.71 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 98.7 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.69 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 98.66 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.65 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.62 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 98.57 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.57 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.54 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.52 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.51 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.44 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 98.43 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 98.42 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.4 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.4 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.39 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.37 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.34 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.34 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.29 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.26 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.23 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.22 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.2 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.2 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.16 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.16 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.15 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.14 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.14 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.14 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.12 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.11 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.11 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.1 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.1 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.1 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.06 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.03 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.03 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.01 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.97 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.96 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.95 | |
| KOG4273 | 418 | consensus Uncharacterized conserved protein [Funct | 97.93 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.91 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 97.85 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 97.84 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 97.79 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 97.77 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 97.74 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 97.72 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 97.71 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 97.66 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 97.62 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.6 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.59 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.55 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.53 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.5 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.5 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.48 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 97.45 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 97.42 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.41 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.38 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.36 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.36 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.34 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.32 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 97.32 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.29 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 97.23 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.21 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 97.18 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.17 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.14 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.04 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 97.03 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.0 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 96.97 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 96.97 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 96.91 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.87 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.86 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 96.83 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 96.71 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 96.69 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 96.69 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.65 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.63 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 96.53 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 96.47 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 96.45 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 96.33 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 96.29 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 96.28 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 96.28 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 96.28 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 96.25 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 96.19 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 96.19 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 96.18 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 96.16 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.15 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 96.14 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 96.14 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 96.12 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 96.02 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 96.01 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 95.99 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 95.96 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 95.95 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 95.95 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 95.94 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.94 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 95.93 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 95.84 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 95.83 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 95.82 | |
| KOG3929 | 363 | consensus Uncharacterized conserved protein [Funct | 95.81 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 95.77 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 95.75 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 95.73 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 95.69 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 95.68 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 95.66 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 95.63 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 95.63 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 95.6 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 95.54 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 95.54 | |
| PRK05416 | 288 | glmZ(sRNA)-inactivating NTPase; Provisional | 95.53 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 95.51 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 95.49 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 95.47 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 95.47 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 95.42 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 95.38 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 95.37 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 95.36 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 95.35 | |
| PRK06217 | 183 | hypothetical protein; Validated | 95.32 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 95.31 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 95.27 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 95.24 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 95.24 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 95.22 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 95.18 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 95.17 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 95.13 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 95.11 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 95.08 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 95.06 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 95.06 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 95.04 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 95.04 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 95.04 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 95.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 94.99 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 94.98 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 94.97 | |
| PRK03839 | 180 | putative kinase; Provisional | 94.97 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 94.95 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 94.94 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 94.94 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 94.94 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 94.93 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 94.92 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 94.91 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 94.91 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 94.91 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 94.9 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 94.89 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 94.89 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 94.89 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 94.88 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 94.87 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 94.87 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 94.87 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 94.85 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 94.84 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 94.83 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 94.82 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 94.81 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 94.79 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 94.77 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 94.77 |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=492.89 Aligned_cols=331 Identities=84% Similarity=1.342 Sum_probs=295.8
Q ss_pred CchhhhhhhhhccCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCC
Q 019959 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (333)
||||+++++.+++++.++...+||+|||+.|||||||+++|+++.|...+.+|+|+++..+.+.++..+.+...+.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~ 80 (334)
T PLN00023 1 MFWRDRERENKEQNGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSE 80 (334)
T ss_pred CccccccccccccccCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999998888888654434444555556
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
+.+.++||||+|+++|..++..+|+++|++|+|||++++.+|+++..|+.++.....+++++.++++++.++|+||||||
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 78999999999999999999999999999999999999999999999999999887666565555565567999999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhcccCCC
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMP 240 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~~~~~~ 240 (333)
+||..+..++++..+..+++++||+++|+.++.+++|..|+||+.+++.++||.+...++++..+|++|++++|+..+++
T Consensus 161 ~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
T PLN00023 161 ADIAPKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYFSDELP 240 (334)
T ss_pred ccccccccccccccccHHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhhcccCC
Confidence 99976543334333346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccccCCCCccccc-cCCCCCC--CCCCCCCccccCCCCCCCCCCCCCCcccCCccccccccCCC
Q 019959 241 APNPWSISPTHKPIQRLDENSSDDDKFYS-SGYSSDP--YNMLPPLPAQRNLTPPPTLYPQQPVSVQENYNLPRFSLTGS 317 (333)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~--~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~ 317 (333)
.+.+|+.+|.++.+... +++.+++.+++ ++|+|++ |+.++||||||+++|||+++|||||++++||++|||+++++
T Consensus 241 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (334)
T PLN00023 241 APSPWSLSPQRSSQRLD-ENTSDDDQFYKRTSLAGDPYKYNTLPPLPAQRNLTPPPTLYPQQPVSSSENYRIPRFSLSSS 319 (334)
T ss_pred CCCCcccCCCCcccccc-ccccchhhhhhhccccCCcccccCCCCCcccccCCCCCccccCCCCCchhccccccccccCC
Confidence 99999999977755555 55555555555 9999999 89999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCC
Q 019959 318 QEISSSARSKRTDINV 333 (333)
Q Consensus 318 ~~~~~~~~~~~~~~~~ 333 (333)
+++++ +|++|+||||
T Consensus 320 ~~~~~-~~~~~~~~~~ 334 (334)
T PLN00023 320 PESSN-ARSKRMDINV 334 (334)
T ss_pred ccccc-ccccccccCC
Confidence 99999 9999999997
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=278.78 Aligned_cols=170 Identities=25% Similarity=0.497 Sum_probs=158.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
-.+.+||+|+|++|||||+|+.||.++.|.+.+..|+|+|+..+.+.++ ++.++++||||+|||||+
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~-------------gk~iKlQIWDTAGQERFr 72 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD-------------GKTIKLQIWDTAGQERFR 72 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec-------------ceEEEEEeeeccccHHHh
Confidence 4678999999999999999999999999999999999999999999988 789999999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...||++||+||+|||+|+.+||.++..|+.++.++.. .++|.+|||||+|+.+. +.|+.
T Consensus 73 tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~------------~~v~~lLVGNK~Dl~~~--~~v~~---- 134 (205)
T KOG0084|consen 73 TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS------------ENVPKLLVGNKCDLTEK--RVVST---- 134 (205)
T ss_pred hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc------------CCCCeEEEeeccccHhh--eecCH----
Confidence 9999999999999999999999999999999999999974 57899999999999987 78885
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++.++.++++. +|+| +|||++.||++.|..+...+..+.
T Consensus 135 ~~a~~fa~~~~~~------~f~E---------TSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 135 EEAQEFADELGIP------IFLE---------TSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHhcCCc------ceee---------cccCCccCHHHHHHHHHHHHHHhc
Confidence 9999999999953 2778 999999999999999998887764
|
|
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=264.04 Aligned_cols=176 Identities=28% Similarity=0.492 Sum_probs=161.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
+...+||+|+|++|||||||+|+|.+.+|...+..|||.+|..|.+.++ ++.+.++||||+|||+|.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-------------~~~vtlQiWDTAGQERFq 72 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-------------DRSVTLQIWDTAGQERFQ 72 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-------------CeEEEEEEEecccHHHhh
Confidence 4566899999999999999999999999999999999999999999987 789999999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
++...||+++|++++|||++++.||++|..|.+++..+..... ....|+||+|||+|+.....|.|+.
T Consensus 73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~--------Pe~FPFVilGNKiD~~~~~~r~VS~---- 140 (210)
T KOG0394|consen 73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQD--------PETFPFVILGNKIDVDGGKSRQVSE---- 140 (210)
T ss_pred hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCC--------CCcccEEEEcccccCCCCccceeeH----
Confidence 9999999999999999999999999999999999988865332 2589999999999998866688885
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.|++||+..| ++|||| +|||.+.||+++|+.+.+.++...
T Consensus 141 ~~Aq~WC~s~g------nipyfE---------tSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 141 KKAQTWCKSKG------NIPYFE---------TSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred HHHHHHHHhcC------CceeEE---------ecccccccHHHHHHHHHHHHHhcc
Confidence 99999999999 589999 999999999999999988877653
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=265.23 Aligned_cols=170 Identities=24% Similarity=0.426 Sum_probs=160.3
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
+..+.+||++||++|||||+|+.+|..+.|...+..|+|+||..+.+.++ +..+.+++|||+||++|
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~-------------g~~i~lQiWDtaGQerf 74 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELD-------------GKKIKLQIWDTAGQERF 74 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeC-------------CeEEEEEEEEcccchhH
Confidence 56788999999999999999999999999999999999999999999988 78999999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
+.+...||++|+++++|||+++..||+++..|+..|.++.. .++|++|||||+|+..+ |.|+.
T Consensus 75 ~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~------------~~v~~~LvGNK~D~~~~--R~V~~--- 137 (207)
T KOG0078|consen 75 RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS------------DDVVKILVGNKCDLEEK--RQVSK--- 137 (207)
T ss_pred HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC------------CCCcEEEeecccccccc--ccccH---
Confidence 99999999999999999999999999999999999999964 58999999999999986 88885
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.++++|.++|+ +|+| ||||+|.||++.|-.|.+.+..+.
T Consensus 138 -e~ge~lA~e~G~-------~F~E---------tSAk~~~NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 138 -ERGEALAREYGI-------KFFE---------TSAKTNFNIEEAFLSLARDILQKL 177 (207)
T ss_pred -HHHHHHHHHhCC-------eEEE---------ccccCCCCHHHHHHHHHHHHHhhc
Confidence 999999999994 6888 999999999999999999988743
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=258.81 Aligned_cols=169 Identities=23% Similarity=0.435 Sum_probs=159.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+|++++|+.|||||+|+.+|+.+.|...+..|+|+++..+.+.++ ++.++|+||||+|+|.|++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-------------~k~IKlqiwDtaGqe~frs 70 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-------------GKQIKLQIWDTAGQESFRS 70 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-------------CceEEEEEEecCCcHHHHH
Confidence 467899999999999999999999999999999999999999999987 7999999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
....||+.|.++|+|||+++++||.+|..|+.+++.+.. +++-|+|+|||+||... |.|+. +
T Consensus 71 v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~------------~NmvImLiGNKsDL~~r--R~Vs~----E 132 (216)
T KOG0098|consen 71 VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN------------ENMVIMLIGNKSDLEAR--REVSK----E 132 (216)
T ss_pred HHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcC------------CCcEEEEEcchhhhhcc--ccccH----H
Confidence 999999999999999999999999999999999999853 58999999999999987 78986 9
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+++.||+++|+ .|+| +||+++.||+++|.....++.+...
T Consensus 133 EGeaFA~ehgL-------ifmE---------TSakt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 133 EGEAFAREHGL-------IFME---------TSAKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred HHHHHHHHcCc-------eeeh---------hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999996 4778 9999999999999999999988765
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=257.85 Aligned_cols=168 Identities=29% Similarity=0.447 Sum_probs=154.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+++|+.+||||||+.||..++|.....+|+|.-|..+.+.++ +..++++||||+|+|+|.+
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-------------~~~ikfeIWDTAGQERy~s 69 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-------------DNTIKFEIWDTAGQERYHS 69 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-------------CcEEEEEEEEcCCcccccc
Confidence 457899999999999999999999999999899999999999999987 6789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
+.+.||++|+++|+|||+++.+||..++.|+.++.+... +++-|.|||||+||.+. |+|.. +
T Consensus 70 lapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~------------~~~vialvGNK~DL~~~--R~V~~----~ 131 (200)
T KOG0092|consen 70 LAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS------------PNIVIALVGNKADLLER--REVEF----E 131 (200)
T ss_pred cccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC------------CCeEEEEecchhhhhhc--ccccH----H
Confidence 999999999999999999999999999999999999863 56778899999999986 78884 9
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++..+|+..|+ +|+| +|||+|.|++++|..|.+.+....
T Consensus 132 ea~~yAe~~gl-------l~~E---------TSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 132 EAQAYAESQGL-------LFFE---------TSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred HHHHHHHhcCC-------EEEE---------EecccccCHHHHHHHHHHhccCcc
Confidence 99999999985 5888 999999999999999888776543
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=255.65 Aligned_cols=171 Identities=22% Similarity=0.334 Sum_probs=154.2
Q ss_pred cCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 13 LNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 13 ~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
...+.+.+.+||+++|+.+|||||||+||+.+.|...|..|||+||..+.+.+. +..+.|++|||+|
T Consensus 14 ~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~-------------d~~vrLQlWDTAG 80 (221)
T KOG0094|consen 14 ATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLE-------------DRTVRLQLWDTAG 80 (221)
T ss_pred cccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEc-------------CcEEEEEEEeccc
Confidence 345667777999999999999999999999999999999999999999999887 7899999999999
Q ss_pred chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 93 HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 93 ~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
||+|+.+.+.|++++.++|+|||+++..||++..+|++.+..... ..++-|+|||||.||.++ |+++
T Consensus 81 QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~g-----------s~~viI~LVGnKtDL~dk--rqvs 147 (221)
T KOG0094|consen 81 QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERG-----------SDDVIIFLVGNKTDLSDK--RQVS 147 (221)
T ss_pred HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccC-----------CCceEEEEEcccccccch--hhhh
Confidence 999999999999999999999999999999999999999988754 125788999999999988 8888
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
. ++++..|++++.. |+| +|||.|+||+.+|..+...+
T Consensus 148 ~----eEg~~kAkel~a~-------f~e---------tsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 148 I----EEGERKAKELNAE-------FIE---------TSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred H----HHHHHHHHHhCcE-------EEE---------ecccCCCCHHHHHHHHHHhc
Confidence 5 8899999999963 777 99999999998887765544
|
|
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=246.24 Aligned_cols=171 Identities=24% Similarity=0.395 Sum_probs=154.9
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
......+||+|||++|||||||+-+|+.+.|......|+|+||..+.+.++ +..+++.||||+|||+
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vd-------------g~~~KlaiWDTAGqEr 72 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVD-------------GKRLKLAIWDTAGQER 72 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEc-------------CceEEEEEEeccchHh
Confidence 345667999999999999999999999999999999999999999999987 7899999999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
|+.+.+.||++|.++|+|||++.+++|.++..|++++..++. ++++-.++||||+|...+ |.|+.
T Consensus 73 FRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Yst-----------n~diikmlVgNKiDkes~--R~V~r-- 137 (209)
T KOG0080|consen 73 FRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYST-----------NPDIIKMLVGNKIDKESE--RVVDR-- 137 (209)
T ss_pred hhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcC-----------CccHhHhhhcccccchhc--ccccH--
Confidence 999999999999999999999999999999999999999876 457888999999998765 88886
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++..||++++++ |+| ||||+..||...|+++++.+++.
T Consensus 138 --eEG~kfAr~h~~L-------FiE---------~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 138 --EEGLKFARKHRCL-------FIE---------CSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred --HHHHHHHHhhCcE-------EEE---------cchhhhccHHHHHHHHHHHHhcC
Confidence 9999999999954 888 99999988887777777766653
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=247.35 Aligned_cols=171 Identities=22% Similarity=0.420 Sum_probs=159.7
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
.-.+.+||+++|+++||||-|+.||+.++|..+...|+|+++..+.+.++ ++.++.+||||+|||+|
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd-------------~k~vkaqIWDTAGQERy 76 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVD-------------GKTVKAQIWDTAGQERY 76 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeec-------------CcEEEEeeecccchhhh
Confidence 35678999999999999999999999999999999999999999999987 79999999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
+.+...||++|.+.++|||++++.+|+++..|+.+++.+.. .+++|+|||||+||.+. |.|..
T Consensus 77 rAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad------------~nivimLvGNK~DL~~l--raV~t--- 139 (222)
T KOG0087|consen 77 RAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD------------SNIVIMLVGNKSDLNHL--RAVPT--- 139 (222)
T ss_pred ccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC------------CCeEEEEeecchhhhhc--cccch---
Confidence 99999999999999999999999999999999999999974 68999999999999985 78885
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++.+|++.++ .|+| +||..+.|++.+|+.++.++.+..-
T Consensus 140 -e~~k~~Ae~~~l-------~f~E---------tSAl~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 140 -EDGKAFAEKEGL-------FFLE---------TSALDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred -hhhHhHHHhcCc-------eEEE---------ecccccccHHHHHHHHHHHHHHHHH
Confidence 999999999984 5888 9999999999999999998887654
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=250.04 Aligned_cols=165 Identities=23% Similarity=0.456 Sum_probs=145.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+.|+|+|+.|||||||+++|+++.|...+.+|++.++..+.+.++ +..+.++||||+|+++|..++.
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~-------------~~~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELR-------------GKKIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEEC-------------CEEEEEEEEeCCCchhhHHHHH
Confidence 479999999999999999999999999999999999988888876 5789999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||+++++||+++..|+..+..... .++|++|||||+||... +.++. ++++
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~------------~~~piilVgNK~DL~~~--~~v~~----~~~~ 129 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS------------EDAELLLVGNKLDCETD--REISR----QQGE 129 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEECcccccc--cccCH----HHHH
Confidence 999999999999999999999999999998876532 47999999999999764 66764 7788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++. .++|+| |||++|.||+++|+.+++.+.+.
T Consensus 130 ~~a~~~~------~~~~~e---------tSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 130 KFAQQIT------GMRFCE---------ASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred HHHHhcC------CCEEEE---------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 8888752 145778 99999999999999999877653
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=232.80 Aligned_cols=170 Identities=25% Similarity=0.402 Sum_probs=156.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
-.+.+|++|+|+..||||||+.+++++.|...+..|.|+++..+++--. ++.++++||||+|+|+|+
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~-------------~kRiklQiwDTagqEryr 84 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRS-------------DKRIKLQIWDTAGQERYR 84 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeec-------------ccEEEEEEEecccchhhh
Confidence 3567899999999999999999999999999999999999999987544 578999999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...+|++++++|+|||++|.+||..++.|.-.|...+- .++|+|+||||||+.++ |.++.
T Consensus 85 tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw------------~naqvilvgnKCDmd~e--Rvis~---- 146 (193)
T KOG0093|consen 85 TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW------------DNAQVILVGNKCDMDSE--RVISH---- 146 (193)
T ss_pred HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec------------cCceEEEEecccCCccc--eeeeH----
Confidence 9999999999999999999999999999999999988863 58999999999999987 78885
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+.++++++++|+ .||| +|||.+.||+.+|+.++..+.+..-
T Consensus 147 e~g~~l~~~LGf-------efFE---------tSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 147 ERGRQLADQLGF-------EFFE---------TSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHhCh-------HHhh---------hcccccccHHHHHHHHHHHHHHHhh
Confidence 999999999996 4888 9999999999999999998887654
|
|
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=234.05 Aligned_cols=165 Identities=26% Similarity=0.470 Sum_probs=153.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+|.+|+|++|||||||+.+|..+.|...|..|+|+|+..+++.++ |..++++||||+|+|+|+.+.
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~-------------G~~VkLqIwDtAGqErFrtit 74 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDIN-------------GDRVKLQIWDTAGQERFRTIT 74 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecC-------------CcEEEEEEeecccHHHHHHHH
Confidence 4688999999999999999999999999999999999999999987 789999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..||++.+++|+|||+++.+||.++..|++++...+. .+|-+|||||.|+.+. +.|.+ +++
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-------------sv~~vLVGNK~d~~~R--rvV~t----~dA 135 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD-------------SVPKVLVGNKNDDPER--RVVDT----EDA 135 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc-------------cccceecccCCCCccc--eeeeh----HHH
Confidence 9999999999999999999999999999999999985 7999999999999875 56664 999
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.||...|+ .+|| +|||+..|++.+|..+.+.+++..
T Consensus 136 r~~A~~mgi-------e~FE---------TSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 136 RAFALQMGI-------ELFE---------TSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred HHHHHhcCc-------hhee---------hhhhhcccchHHHHHHHHHHHHHH
Confidence 999999984 5888 999999999999999888887765
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=245.87 Aligned_cols=166 Identities=25% Similarity=0.415 Sum_probs=148.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|+.|||||||+++|.++.+...+.++++.++..+.+.++ +..+.++||||+|+++|..
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~-------------~~~~~l~iwDt~G~~~~~~ 70 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLD-------------GRRVKLQLWDTSGQGRFCT 70 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEEC-------------CEEEEEEEEeCCCcHHHHH
Confidence 456899999999999999999999999988888899999888888776 5789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++++|++|+|||++++.||+++..|+.++.... +++|+||||||+||... +.++. +
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-------------~~~piilVGNK~DL~~~--~~v~~----~ 131 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-------------PGVPKILVGNRLHLAFK--RQVAT----E 131 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECccchhc--cCCCH----H
Confidence 99999999999999999999999999999999997764 37999999999999765 56664 8
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++.+++..+ ++|+| |||++|.||+++|+.+++.++.+
T Consensus 132 ~~~~~a~~~~-------~~~~e---------~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 132 QAQAYAERNG-------MTFFE---------VSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred HHHHHHHHcC-------CEEEE---------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 8999999887 46888 99999999999999999877654
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=242.57 Aligned_cols=166 Identities=22% Similarity=0.319 Sum_probs=144.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+++|++|||||||+++|+.+.|...+.+|++.++. +.+.++ +..+.+.||||+|+++|..
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~-------------~~~~~l~iwDtaG~e~~~~ 68 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEID-------------TQRIELSLWDTSGSPYYDN 68 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEEC-------------CEEEEEEEEECCCchhhHh
Confidence 45689999999999999999999999999999999987764 556655 6789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----------c
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK----------E 167 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~----------~ 167 (333)
++..+++++|++|+|||++++.||+++ ..|+.++.... +++|++|||||+||.+. .
T Consensus 69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-------------~~~piilVgNK~DL~~~~~~~~~~~~~~ 135 (182)
T cd04172 69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-------------PNTKMLLVGCKSDLRTDLTTLVELSNHR 135 (182)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-------------CCCCEEEEeEChhhhcChhhHHHHHhcC
Confidence 999999999999999999999999997 89999998874 36899999999999652 1
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC-HHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFRMLI 230 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~-v~~~~~~l~~~l~ 230 (333)
.+.|+. ++++++|+++++ ++|+| |||++|.| |+++|+.+.+.++
T Consensus 136 ~~~v~~----~~~~~~a~~~~~------~~~~E---------~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 136 QTPVSY----DQGANMAKQIGA------ATYIE---------CSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCH----HHHHHHHHHcCC------CEEEE---------CCcCCCCCCHHHHHHHHHHHHh
Confidence 245664 889999999985 36888 99999998 9999988887543
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=227.97 Aligned_cols=169 Identities=22% Similarity=0.439 Sum_probs=156.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+.+|++|+|+.|.|||+|+++|+.++|......|+|++|..+.+.+. ++.++++||||+|||+|++
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVG-------------gK~vKLQIWDTAGQErFRS 73 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVG-------------GKTVKLQIWDTAGQERFRS 73 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeec-------------CcEEEEEEeecccHHHHHH
Confidence 567899999999999999999999999999999999999999999987 7899999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
..+.||++|-+.++|||+++++||+.+..|+..++.... +++-+|++|||.||... |+|+. .
T Consensus 74 VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs------------~nIvviL~GnKkDL~~~--R~Vtf----l 135 (214)
T KOG0086|consen 74 VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS------------PNIVVILCGNKKDLDPE--REVTF----L 135 (214)
T ss_pred HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC------------CcEEEEEeCChhhcChh--hhhhH----H
Confidence 999999999999999999999999999999999988753 57889999999999987 88885 8
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++..||.+..+. +.| +||++|.||++.|-.+.+.++.++-
T Consensus 136 EAs~FaqEnel~-------flE---------TSa~TGeNVEEaFl~c~~tIl~kIE 175 (214)
T KOG0086|consen 136 EASRFAQENELM-------FLE---------TSALTGENVEEAFLKCARTILNKIE 175 (214)
T ss_pred HHHhhhccccee-------eee---------ecccccccHHHHHHHHHHHHHHHHh
Confidence 899999988753 666 9999999999999999999988753
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=239.49 Aligned_cols=162 Identities=19% Similarity=0.327 Sum_probs=141.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||+.+|+.+.|...+.+|++.++ .+.+.++ +..+.+.||||+|+++|..++.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~-------------~~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVD-------------GNTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEEC-------------CEEEEEEEEECCCCccccccch
Confidence 7999999999999999999999999999999998776 4455554 6789999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC--------CccC
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG--------TRGS 172 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~--------r~v~ 172 (333)
.+++++|++|+|||++++.||+++ ..|+.++.... .++|++|||||+||.+... +.++
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-------------~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~ 134 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-------------PNVPIVLVGTKLDLRDDKQYLADHPGASPIT 134 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEeChhhccChhhhhhccCCCCCC
Confidence 999999999999999999999998 68999998764 2799999999999975421 2355
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+++.++++.+++ ++|+| |||++|.||+++|+.+++.+
T Consensus 135 ----~~~~~~~a~~~~~------~~~~E---------~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 135 ----TAQGEELRKQIGA------AAYIE---------CSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ----HHHHHHHHHHcCC------CEEEE---------CCCCcccCHHHHHHHHHHHH
Confidence 4889999999884 25778 99999999999999998865
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=229.79 Aligned_cols=171 Identities=25% Similarity=0.442 Sum_probs=155.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
-++++.+|||++-||||||++.|+.++|.+-..||+|+|+..+.+++.+ +..+++++|||+|||+|++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~p------------g~riklqlwdtagqerfrs 73 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRP------------GYRIKLQLWDTAGQERFRS 73 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCC------------CcEEEEEEeeccchHHHHH
Confidence 3678999999999999999999999999999999999999999998854 8899999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC-CCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGL-PVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~-~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
+...||+++-++++|||++|++||+++..|+.+...+.. ++ .+-+.|||+|+||... |+|+.
T Consensus 74 itksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q-----------~P~k~VFlLVGhKsDL~Sq--RqVt~---- 136 (213)
T KOG0091|consen 74 ITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQ-----------GPDKVVFLLVGHKSDLQSQ--RQVTA---- 136 (213)
T ss_pred HHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcC-----------CCCeeEEEEeccccchhhh--ccccH----
Confidence 999999999999999999999999999999999877742 23 4446799999999966 88985
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++.+++.+|+. |+| +|||+|.||++.|..+.+++..++.
T Consensus 137 EEaEklAa~hgM~-------FVE---------TSak~g~NVeEAF~mlaqeIf~~i~ 177 (213)
T KOG0091|consen 137 EEAEKLAASHGMA-------FVE---------TSAKNGCNVEEAFDMLAQEIFQAIQ 177 (213)
T ss_pred HHHHHHHHhcCce-------EEE---------ecccCCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999964 888 9999999999999999999887654
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=238.09 Aligned_cols=164 Identities=21% Similarity=0.296 Sum_probs=141.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+++|++|||||||+++|+++.|...+.+|++.++. +.+.++ +..+.+.||||+|+++|..++
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~-------------~~~~~l~iwDt~G~~~~~~~~ 66 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEID-------------EQRIELSLWDTSGSPYYDNVR 66 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEEC-------------CEEEEEEEEECCCchhhhhcc
Confidence 479999999999999999999999999999999987764 566665 678999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----------cCC
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK----------EGT 169 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~----------~~r 169 (333)
..+++++|++|+|||+++++||+++ ..|+.++...+ +++|++|||||+||.+. ..+
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-------------~~~~iilVgnK~DL~~~~~~~~~~~~~~~~ 133 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-------------PNTKVLLVGCKTDLRTDLSTLMELSHQRQA 133 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-------------CCCCEEEEEEChhhhcChhHHHHHHhcCCC
Confidence 9999999999999999999999996 89999998874 37899999999999642 124
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC-HHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFRMLI 230 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~-v~~~~~~l~~~l~ 230 (333)
.|+. ++++++++++++ ++|+| |||++|.| |+++|..+.+..+
T Consensus 134 ~v~~----~e~~~~a~~~~~------~~~~E---------~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 134 PVSY----EQGCAIAKQLGA------EIYLE---------CSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CCCH----HHHHHHHHHhCC------CEEEE---------CccCcCCcCHHHHHHHHHHHHh
Confidence 5664 889999999985 25778 99999995 9999988887544
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=243.08 Aligned_cols=171 Identities=20% Similarity=0.274 Sum_probs=146.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|||+.|||||||+++|+++.|...+.+|++.++. +.+.++ +..+.+.||||+|+++|.
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~-------------~~~v~l~iwDTaG~e~~~ 75 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETE-------------EQRVELSLWDTSGSPYYD 75 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEEC-------------CEEEEEEEEeCCCchhhH
Confidence 356789999999999999999999999999999999988774 445555 678999999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----------
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK---------- 166 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~---------- 166 (333)
.+...+|+++|++|+|||++++.||+++ ..|+.++.... +++|+||||||+||...
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-------------~~~piilVgNK~DL~~~~~~~~~l~~~ 142 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-------------PSTRILLIGCKTDLRTDLSTLMELSNQ 142 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECcccccccchhhhhccc
Confidence 9999999999999999999999999984 89999998764 26899999999999642
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc-CHHHHHHHHHHHHHHHHh
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~-~v~~~~~~l~~~l~~~~~ 234 (333)
..+.|+. +++++||+++++. +|+| |||++|. ||+++|..++..+++...
T Consensus 143 ~~~~Vs~----~e~~~~a~~~~~~------~~~E---------tSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 143 KQAPISY----EQGCALAKQLGAE------VYLE---------CSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred cCCcCCH----HHHHHHHHHcCCC------EEEE---------ccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 1255664 8899999999852 4777 9999997 799999999988776543
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=221.92 Aligned_cols=169 Identities=25% Similarity=0.407 Sum_probs=152.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||++||+.|||||+|+++|+.+-|......|+|++|..+++.++ +..++++||||+|+|+|+++
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~-------------gekiklqiwdtagqerfrsi 72 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN-------------GEKIKLQIWDTAGQERFRSI 72 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEEC-------------CeEEEEEEeeccchHHHHHH
Confidence 45899999999999999999999999999999999999999999998 78999999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...||+.|+++|+|||++...||+-+-.|+.+|..+.. ..+--|+||||+|+.+. |+|.. +.
T Consensus 73 tqsyyrsahalilvydiscqpsfdclpewlreie~yan------------~kvlkilvgnk~d~~dr--revp~----qi 134 (213)
T KOG0095|consen 73 TQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN------------NKVLKILVGNKIDLADR--REVPQ----QI 134 (213)
T ss_pred HHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh------------cceEEEeeccccchhhh--hhhhH----HH
Confidence 99999999999999999999999999999999998853 35667899999999987 77875 78
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhc
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYF 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~ 235 (333)
+++|++...+ =|.| +|||+..|++.+|.++.-.++.....
T Consensus 135 geefs~~qdm-------yfle---------tsakea~nve~lf~~~a~rli~~ar~ 174 (213)
T KOG0095|consen 135 GEEFSEAQDM-------YFLE---------TSAKEADNVEKLFLDLACRLISEARQ 174 (213)
T ss_pred HHHHHHhhhh-------hhhh---------hcccchhhHHHHHHHHHHHHHHHHHh
Confidence 8888887654 2666 99999999999999999888876553
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=236.73 Aligned_cols=165 Identities=21% Similarity=0.326 Sum_probs=141.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+++|+.|||||||+++|+.+.|...+.+|++..+. +.+.++ +..+.+.||||+|+++|..++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~-------------~~~~~l~i~Dt~G~e~~~~l~ 68 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVD-------------GRTVSLNLWDTAGQEEYDRLR 68 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEEC-------------CEEEEEEEEECCCchhhhhhh
Confidence 589999999999999999999999999999999987654 445554 678999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC----------C
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG----------T 169 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~----------r 169 (333)
..+++++|++|+|||++++.||+++. .|+.++.... .++|++|||||+||.+... +
T Consensus 69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-------------~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 135 (191)
T cd01875 69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-------------PNVPILLVGTKKDLRNDADTLKKLKEQGQA 135 (191)
T ss_pred hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEEeChhhhcChhhHHHHhhccCC
Confidence 99999999999999999999999996 6998887653 3799999999999975421 2
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.++ .+++++++++++. ++|+| |||++|.|++++|+.+++.++.
T Consensus 136 ~v~----~~~~~~~a~~~~~------~~~~e---------~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 136 PIT----PQQGGALAKQIHA------VKYLE---------CSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCC----HHHHHHHHHHcCC------cEEEE---------eCCCCCCCHHHHHHHHHHHHhc
Confidence 244 3789999998884 46778 9999999999999999887754
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=225.61 Aligned_cols=172 Identities=23% Similarity=0.373 Sum_probs=157.2
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
..+...|||+++|...||||||+-||+.+.|......|+-..|..+.+.+. +....+.||||+|||+
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-------------d~ra~L~IWDTAGQEr 74 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-------------DCRADLHIWDTAGQER 74 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-------------cceeeeeeeeccchHh
Confidence 346678999999999999999999999999999999999888988988876 6888999999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
|..+-+.||++++++++|||++|++||+.++.|..+++.... ..+-+++||||+||.++ |.|+.
T Consensus 75 fHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG------------nei~l~IVGNKiDLEee--R~Vt~-- 138 (218)
T KOG0088|consen 75 FHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG------------NEIELLIVGNKIDLEEE--RQVTR-- 138 (218)
T ss_pred hhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC------------CeeEEEEecCcccHHHh--hhhhH--
Confidence 999999999999999999999999999999999999998863 46889999999999987 88885
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++.+++..|.. |+| +|||.+.||.++|+.+...+++...
T Consensus 139 --qeAe~YAesvGA~-------y~e---------TSAk~N~Gi~elFe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 139 --QEAEAYAESVGAL-------YME---------TSAKDNVGISELFESLTAKMIEHSS 179 (218)
T ss_pred --HHHHHHHHhhchh-------hee---------cccccccCHHHHHHHHHHHHHHHhh
Confidence 9999999999965 777 9999999999999999999888654
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-32 Score=229.07 Aligned_cols=164 Identities=24% Similarity=0.475 Sum_probs=144.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|+++.|...+.+|++.++..+.+.++ +..+.+.||||+|+++|..++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVN-------------GQKIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEEC-------------CEEEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999999999988889999999887777765 567899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++++|++|+|||++++.+|+.+..|+..+..... .++|+++||||+|+... +.++ .+++
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iiiv~nK~Dl~~~--~~~~----~~~~ 130 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN------------PNTVIFLIGNKADLEAQ--RDVT----YEEA 130 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--cCcC----HHHH
Confidence 9999999999999999999999999999998876632 36899999999999765 4555 3778
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.++++..+ ++|+| |||++|.|++++|..+++.+.+
T Consensus 131 ~~~~~~~~-------~~~~e---------~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 131 KQFADENG-------LLFLE---------CSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred HHHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHHHhh
Confidence 88888776 46888 9999999999999999887754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=228.25 Aligned_cols=177 Identities=25% Similarity=0.467 Sum_probs=148.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+++|++|||||||+++|+++.+...+.+|++.++..+.+.+........ ...+..+.+.||||+|+++|..+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~ 79 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGT---LGRGQRIHLQLWDTAGQERFRSL 79 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCcccccc---ccCCCEEEEEEEeCCChHHHHHH
Confidence 568999999999999999999999999999999999999888777752111000 01245788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||+++++||.++..|+.++..... ..++|+++||||+|+.+. +.++. ++
T Consensus 80 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piiiv~nK~Dl~~~--~~v~~----~~ 142 (180)
T cd04127 80 TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-----------CENPDIVLCGNKADLEDQ--RQVSE----EQ 142 (180)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEeCccchhc--CccCH----HH
Confidence 99999999999999999999999999999999977632 136899999999999865 45553 77
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+.++++.++ ++|+| +||++|.|++++|+.+.+.++++
T Consensus 143 ~~~~~~~~~-------~~~~e---------~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 143 AKALADKYG-------IPYFE---------TSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred HHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHhh
Confidence 899998887 46888 99999999999999999887654
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=228.18 Aligned_cols=180 Identities=27% Similarity=0.457 Sum_probs=160.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
-.+.||.+.+|++||||||++++++.+.|......|+|+||..|.+.|+.++++. +..+..+.+++|||+|||+|+
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g----~gr~~rihLQlWDTAGQERFR 81 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGG----GGRGQRIHLQLWDTAGQERFR 81 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCC----CCcceEEEEeeeccccHHHHH
Confidence 3466899999999999999999999999999999999999999999998655432 233677899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
++...|++.|-+++++||+++..||.++..|+.+++.+.- + ++.-||++|||+||.+. |.|+.
T Consensus 82 SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY-c----------E~PDivlcGNK~DL~~~--R~Vs~---- 144 (219)
T KOG0081|consen 82 SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY-C----------ENPDIVLCGNKADLEDQ--RVVSE---- 144 (219)
T ss_pred HHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhc-c----------CCCCEEEEcCccchhhh--hhhhH----
Confidence 9999999999999999999999999999999999987743 1 36679999999999987 77874
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+++.++|+++| +|||| +||-+|.||++.++.++..+.+++.
T Consensus 145 ~qa~~La~kyg-------lPYfE---------TSA~tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 145 DQAAALADKYG-------LPYFE---------TSACTGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred HHHHHHHHHhC-------CCeee---------eccccCcCHHHHHHHHHHHHHHHHH
Confidence 89999999999 68999 9999999999999999998887754
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-31 Score=227.14 Aligned_cols=165 Identities=18% Similarity=0.307 Sum_probs=142.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|+++.|...+.+|++..+ .+.+.++ +..+.+.||||+|+++|..++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~l~ 67 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARID-------------NEPALLDILDTAGQAEFTAMR 67 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEEC-------------CEEEEEEEEeCCCchhhHHHh
Confidence 47999999999999999999999999888889988655 3445554 567899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||++++.||+.+..|+..+..... ..++|++|||||+|+... +.++. +++
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-----------~~~~piilvgNK~Dl~~~--~~v~~----~~~ 130 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-----------TEDIPLVLVGNKVDLESQ--RQVTT----EEG 130 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEEChhhhhc--CccCH----HHH
Confidence 9999999999999999999999999999888876532 136999999999999765 56664 788
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++++.++ ++|+| |||++|.||+++|+.+++.+.+.
T Consensus 131 ~~~a~~~~-------~~~~e---------~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 131 RNLAREFN-------CPFFE---------TSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred HHHHHHhC-------CEEEE---------EecCCCCCHHHHHHHHHHHHHHh
Confidence 89998877 56888 99999999999999999887753
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.9e-31 Score=230.60 Aligned_cols=171 Identities=29% Similarity=0.519 Sum_probs=146.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++. +..+.+.||||+|+++|..++.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~------------~~~~~l~l~Dt~G~~~~~~~~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP------------NTVVRLQLWDIAGQERFGGMTR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC------------CCEEEEEEEECCCchhhhhhHH
Confidence 5999999999999999999999999888999999998888877642 4678999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.+|+.+..|+.++...... +...++|+||||||+|+.+. +.+. .+++.
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~--------~~~~~~piilv~NK~Dl~~~--~~~~----~~~~~ 134 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTL--------PNGEPIPCLLLANKCDLKKR--LAKD----GEQMD 134 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcc--------cCCCCCcEEEEEECCCcccc--cccC----HHHHH
Confidence 9999999999999999999999999999988764321 11247899999999999753 4455 37889
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++..++ ++|+| |||++|.|++++|+.+++.+++..
T Consensus 135 ~~~~~~~~------~~~~e---------~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 135 QFCKENGF------IGWFE---------TSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred HHHHHcCC------ceEEE---------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99998874 35777 999999999999999999887653
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=228.49 Aligned_cols=162 Identities=19% Similarity=0.284 Sum_probs=138.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|||++|||||||+++|+++.|...+.+|++.++. +.+.++ +..+.+.||||+|+++|..++.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-------------GEPYTLGLFDTAGQEDYDRLRP 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEEC-------------CEEEEEEEEECCCccchhhhhh
Confidence 79999999999999999999999998889999987764 345554 5678999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------CCc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE----------GTR 170 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~----------~r~ 170 (333)
.+++++|++|+|||++++++|+++. .|+.++.... .++|+||||||+|+.... .+.
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-------------~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~ 134 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-------------PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP 134 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECHhhhhChhhHHHhhhccCCC
Confidence 9999999999999999999999996 6999887753 368999999999986542 144
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
|+ .+++++++++.+. ++|+| |||++|.|++++|+.++..+
T Consensus 135 v~----~~~~~~~a~~~~~------~~~~e---------~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 135 IT----PETGEKLARDLKA------VKYVE---------CSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred cC----HHHHHHHHHHhCC------cEEEE---------ecCCCCCCHHHHHHHHHHHh
Confidence 55 3788999988773 45777 99999999999999888743
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=227.89 Aligned_cols=167 Identities=19% Similarity=0.359 Sum_probs=140.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|+.|||||||+++|+++.|...+.+|+|.++..+.+.++ +..+.+.||||+|+++|..++.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~-------------~~~~~l~iwDt~G~~~~~~~~~ 67 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIR-------------GTEITFSIWDLGGQREFINMLP 67 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-------------CEEEEEEEEeCCCchhHHHhhH
Confidence 589999999999999999999999998899999999988888776 5688999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.||+++..|+.++..... ..+| |+||||+|+..... ......+.++++
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~------------~~~p-ilVgnK~Dl~~~~~-~~~~~~~~~~~~ 133 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK------------TAIP-ILVGTKYDLFADLP-PEEQEEITKQAR 133 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCE-EEEEEchhcccccc-chhhhhhHHHHH
Confidence 999999999999999999999999999999977632 2466 67899999963210 000011236788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++.++ ++|+| |||++|.|++++|+.+.+.+..
T Consensus 134 ~~a~~~~-------~~~~e---------~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 134 KYAKAMK-------APLIF---------CSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 8888877 46777 9999999999999999887764
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=223.09 Aligned_cols=160 Identities=28% Similarity=0.472 Sum_probs=141.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||+++|+++.|...+.+|++.++..+.+.++ +..+.+.|||++|++++..++.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVD-------------GIKVRIQIWDTAGQERYQTITK 67 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEeCCCcHhHHhhHH
Confidence 589999999999999999999999988889999998888888775 5678999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++++|||+++++||+.+..|+.++..... .++|+++||||+|+... +.+.. +++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~------------~~~~iilvgnK~Dl~~~--~~v~~----~~~~ 129 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP------------EGVQKILIGNKADEEQK--RQVGD----EQGN 129 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--cCCCH----HHHH
Confidence 999999999999999999999999999999876632 36899999999999765 55663 7889
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+++..+ ++|+| |||++|.|++++|+.|.+.
T Consensus 130 ~~~~~~~-------~~~~e---------~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 130 KLAKEYG-------MDFFE---------TSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHhh
Confidence 9988776 56888 9999999999999988764
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=222.92 Aligned_cols=165 Identities=24% Similarity=0.433 Sum_probs=145.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.|...+.+|++.++..+.+.++ +..+.+.+|||+|++++..+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~l~D~~g~~~~~~~ 68 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELD-------------GKKIKLQIWDTAGQERFRTI 68 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEEC-------------CEEEEEEEEeCCchHHHHHH
Confidence 45899999999999999999999999999999999998888888775 56789999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++++|+.+..|+..+..... .++|+++||||+|+.+. +.+. .++
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~iiv~nK~Dl~~~--~~~~----~~~ 130 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS------------EDVERMLVGNKCDMEEK--RVVS----KEE 130 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC------------CCCcEEEEEECcccccc--cCCC----HHH
Confidence 99999999999999999999999999999999987632 36899999999999864 4444 367
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.++++.++ ++|+| |||++|.|++++|+.+.+.++.
T Consensus 131 ~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 131 GEALADEYG-------IKFLE---------TSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 888888776 56888 9999999999999999988764
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=212.26 Aligned_cols=169 Identities=24% Similarity=0.462 Sum_probs=154.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+.+|.+|+|+.|||||+|++.|+..+|...-+.|+|++|..+.+++. +..++++||||+|+++|+.
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievs-------------gqkiklqiwdtagqerfra 75 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-------------GQKIKLQIWDTAGQERFRA 75 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEec-------------CcEEEEEEeecccHHHHHH
Confidence 467899999999999999999999999999999999999999999987 7899999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
..+.||+++.+.++|||++.+.++.++..|+...+... +++.-|+++|||.||... |.|. ++
T Consensus 76 vtrsyyrgaagalmvyditrrstynhlsswl~dar~lt------------npnt~i~lignkadle~q--rdv~----ye 137 (215)
T KOG0097|consen 76 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT------------NPNTVIFLIGNKADLESQ--RDVT----YE 137 (215)
T ss_pred HHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC------------CCceEEEEecchhhhhhc--ccCc----HH
Confidence 99999999999999999999999999999999887764 367889999999999977 6777 69
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++|+++.|+. |.| +|||+|.|+++.|-+....+..+..
T Consensus 138 eak~faeengl~-------fle---------~saktg~nvedafle~akkiyqniq 177 (215)
T KOG0097|consen 138 EAKEFAEENGLM-------FLE---------ASAKTGQNVEDAFLETAKKIYQNIQ 177 (215)
T ss_pred HHHHHHhhcCeE-------EEE---------ecccccCcHHHHHHHHHHHHHHhhh
Confidence 999999999964 777 9999999999999888887776643
|
|
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=220.93 Aligned_cols=163 Identities=26% Similarity=0.441 Sum_probs=141.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+..+ +..+.+.+|||+|++++..++.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~g~~~~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN-------------DKRVKLQIWDTAGQERYRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEECCChHHHHHHHH
Confidence 799999999999999999999999988888999988877777654 5678999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++++|||++++++|+.+..|+..+..... .++|++|||||+|+.+. +.+. .+++.
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piivv~nK~Dl~~~--~~~~----~~~~~ 130 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW------------DNAQVILVGNKCDMEDE--RVVS----SERGR 130 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCCEEEEEECcccCcc--cccC----HHHHH
Confidence 999999999999999999999999999999977642 36899999999999765 4444 36778
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++.++ ++++| +||++|.|++++|+.+...+.+
T Consensus 131 ~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 131 QLADQLG-------FEFFE---------ASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred HHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHHHHh
Confidence 8888776 46777 9999999999999999887643
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=231.42 Aligned_cols=168 Identities=21% Similarity=0.268 Sum_probs=145.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.|...+.+|++.++..+.+.+++ +..+.+.||||+|++.+..++.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~------------~~~~~~~i~Dt~G~~~~~~l~~ 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPG------------NLNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCC------------CCEEEEEEEECCCcHHHHHHHH
Confidence 5999999999999999999999999999999999999888888752 3578999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||+++++||+++..|+..+...... ...++|+++||||+|+.+. +.++. ++++
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~---------~~~~~piilVgNK~DL~~~--~~v~~----~~~~ 133 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKS---------SETQPLVVLVGNKTDLEHN--RTVKD----DKHA 133 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccc---------cCCCceEEEEEECcccccc--cccCH----HHHH
Confidence 9999999999999999999999999999999876421 0135789999999999754 55653 7788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++.++ +++++ +||++|.|++++|+.+.+.+...
T Consensus 134 ~~~~~~~-------~~~~~---------iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 134 RFAQANG-------MESCL---------VSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred HHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHHHHhc
Confidence 8988877 45777 99999999999999998877653
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=227.75 Aligned_cols=181 Identities=23% Similarity=0.409 Sum_probs=151.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+++||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.+.+ +..+.++||||+|++++..+
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~------------~~~~~l~i~Dt~G~~~~~~~ 68 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEP------------GVRIKLQLWDTAGQERFRSI 68 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECC------------CCEEEEEEEeCCcchhHHHH
Confidence 368999999999999999999999999888889999999888887632 56789999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...+++++|++|+|||++++.||+++..|+.++..... ...+|++|||||+|+... +.+.. ++
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-----------~~~~~iilvgNK~Dl~~~--~~v~~----~~ 131 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ-----------PHRPVFILVGHKCDLESQ--RQVTR----EE 131 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCeEEEEEEccccccc--cccCH----HH
Confidence 99999999999999999999999999999999977632 125789999999999864 45553 77
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMPAPNPWS 246 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 246 (333)
+.++++.++ ++|+| +||++|.|++++|+.+.+.+.++.. ........+|.
T Consensus 132 ~~~~~~~~~-------~~~~e---------~Sak~g~~v~e~f~~l~~~~~~~~~-~~~~~~~~~~~ 181 (211)
T cd04111 132 AEKLAKDLG-------MKYIE---------TSARTGDNVEEAFELLTQEIYERIK-RGELCALDGWD 181 (211)
T ss_pred HHHHHHHhC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHhh-cCCCCcccccc
Confidence 888988877 46888 9999999999999999998876643 22334444443
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=219.85 Aligned_cols=167 Identities=28% Similarity=0.496 Sum_probs=143.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.++||||+|++++..++.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR-------------NKEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-------------CeEEEEEEEECCccHHHHHHHH
Confidence 599999999999999999999999999999999999988888776 5788999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.+|+.+..|+.++....... ....++|+++|+||+|+..+ +.++ .++++
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~-------~~~~~~piilv~nK~Dl~~~--~~~~----~~~~~ 134 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPH-------GNMENIVVVVCANKIDLTKH--RAVS----EDEGR 134 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccc-------ccCCCceEEEEEEchhcccc--cccC----HHHHH
Confidence 99999999999999999999999999999998764210 01236899999999999753 3444 37777
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.++...+ ++|+| +||++|.|++++++.+++.++
T Consensus 135 ~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 135 LWAESKG-------FKYFE---------TSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred HHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHh
Confidence 8888776 45777 999999999999999988765
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=220.84 Aligned_cols=161 Identities=32% Similarity=0.579 Sum_probs=147.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|+.+||||||+++|.++.+...+.+|+|.+...+.+.++ +..+.++|||++|+++|..++..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~D~~g~~~~~~~~~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSID-------------GKPVNLEIWDTSGQERFDSLRDI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEET-------------TEEEEEEEEEETTSGGGHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccc-------------ccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999886 68899999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
+++++|++|+|||+++++||+++..|+..+..... .++|++|||||.|+.+. +.++. +++++
T Consensus 68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~------------~~~~iivvg~K~D~~~~--~~v~~----~~~~~ 129 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP------------EDIPIIVVGNKSDLSDE--REVSV----EEAQE 129 (162)
T ss_dssp HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST------------TTSEEEEEEETTTGGGG--SSSCH----HHHHH
T ss_pred ccccccccccccccccccccccccccccccccccc------------ccccceeeecccccccc--ccchh----hHHHH
Confidence 99999999999999999999999999999998853 36899999999999874 67774 88999
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++++++ ++|+| |||+++.|+.++|..+++.++
T Consensus 130 ~~~~~~-------~~~~e---------~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 130 FAKELG-------VPYFE---------VSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp HHHHTT-------SEEEE---------EBTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHhC-------CEEEE---------EECCCCCCHHHHHHHHHHHHh
Confidence 999998 46888 999999999999999988775
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=231.95 Aligned_cols=166 Identities=20% Similarity=0.316 Sum_probs=140.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|||+.|||||||+++|+++.|...+.+|++.++. ..+.++ +..+.+.||||+|++.|..++
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~-------------~~~v~L~iwDt~G~e~~~~l~ 66 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEID-------------KRRIELNMWDTSGSSYYDNVR 66 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEEC-------------CEEEEEEEEeCCCcHHHHHHh
Confidence 379999999999999999999999999999999987774 455554 678999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------CC
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE----------GT 169 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~----------~r 169 (333)
..+|.++|++|+|||++++++|+++ ..|..++.... +++|+||||||+||.... ..
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-------------~~~piiLVgnK~DL~~~~~~~~~~~~~~~~ 133 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-------------PNAKVVLVGCKLDMRTDLATLRELSKQRLI 133 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEEECcccccchhhhhhhhhccCC
Confidence 9999999999999999999999998 57888776654 379999999999997531 01
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC-HHHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFRMLIRR 232 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~-v~~~~~~l~~~l~~~ 232 (333)
.|+ .+++..++++.|+ ++|+| |||+++.| |+++|+.+....+.+
T Consensus 134 pIs----~e~g~~~ak~~~~------~~y~E---------~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 134 PVT----HEQGTVLAKQVGA------VSYVE---------CSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred ccC----HHHHHHHHHHcCC------CEEEE---------cCCCcCCcCHHHHHHHHHHHHHhc
Confidence 244 3789999999985 36888 99999985 999998888876543
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=219.54 Aligned_cols=163 Identities=26% Similarity=0.496 Sum_probs=143.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.+||++|++++..++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~~~~~ 68 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-------------GKTIKLQIWDTAGQERFRTIT 68 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEECCCcHhHHHHH
Confidence 4799999999999999999999999988888999988888888775 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||+++++||.++..|+..+..... .++|+++||||+|+... +.+. .+++
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~------------~~~~~iiv~nK~Dl~~~--~~~~----~~~~ 130 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS------------ENVNKLLVGNKCDLTDK--RVVD----YSEA 130 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC------------CCCcEEEEEEChhcccc--cCCC----HHHH
Confidence 9999999999999999999999999999999977642 36899999999999765 4454 3778
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
..+++.++ ++|+| +||++|.|++++|+.+.+.+.
T Consensus 131 ~~~~~~~~-------~~~~~---------~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 131 QEFADELG-------IPFLE---------TSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred HHHHHHcC-------CeEEE---------EECCCCcCHHHHHHHHHHHHH
Confidence 88888776 56888 999999999999999988765
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=221.22 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=141.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||++||++|||||||+++|+++.|...+.+|++.++..+.+.++ +..+.++||||+|+++|..++..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEIL-------------GVPFSLQLWDTAGQERFKCIAST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEeCCChHHHHhhHHH
Confidence 89999999999999999999999999999999999988888775 56789999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
+++++|++|+|||++++.+|+.+..|+.++.+... ..++|+++||||+|+.+.....+. .+++.+
T Consensus 69 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~iilVgnK~Dl~~~~~~~~~----~~~~~~ 133 (170)
T cd04108 69 YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-----------PSSVLLFLVGTKKDLSSPAQYALM----EQDAIK 133 (170)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-----------CCCCeEEEEEEChhcCcccccccc----HHHHHH
Confidence 99999999999999999999999999999866532 125789999999999755322223 366778
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+++.++ ++|+| +||++|.|++++|+.+.+.+.+
T Consensus 134 ~~~~~~-------~~~~e---------~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 134 LAAEMQ-------AEYWS---------VSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHH
Confidence 887776 45777 9999999999999999877643
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=222.73 Aligned_cols=162 Identities=20% Similarity=0.287 Sum_probs=136.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+.+|+++.|...+.+|++..+ .+.+.++ +..+.+.||||+|+++|..++
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-------------GKPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEEC-------------CEEEEEEEEECCCchhhhhhh
Confidence 37999999999999999999999999988999886544 4445554 577899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------CC
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE----------GT 169 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~----------~r 169 (333)
..+++++|++|+|||+++++||+++. .|+..+.... .++|++|||||+|+.+.. .+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-------------~~~piilvgnK~Dl~~~~~~~~~~~~~~~~ 133 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-------------PNTPIILVGTKLDLRDDKDTIEKLKEKKLT 133 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEeeChhhccChhhHHHHhhccCC
Confidence 99999999999999999999999995 6988887653 379999999999996531 13
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.++ .+++.+++++++. ++|+| |||++|.|++++|+.+.+.
T Consensus 134 ~v~----~~~~~~~~~~~~~------~~~~e---------~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 134 PIT----YPQGLAMAKEIGA------VKYLE---------CSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CCC----HHHHHHHHHHcCC------cEEEE---------ecccccCCHHHHHHHHHHh
Confidence 455 4889999999884 46788 9999999999999888753
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-32 Score=216.10 Aligned_cols=163 Identities=23% Similarity=0.420 Sum_probs=148.3
Q ss_pred EEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhh
Q 019959 25 LVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSIL 103 (333)
Q Consensus 25 ~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~ 103 (333)
+++|++++|||+|+-||..+.|.. ....|+|++|..+.+.++ +..+++++|||+|||+|++....|
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~-------------~~kvklqiwdtagqerfrsvt~ay 67 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMD-------------DKKVKLQIWDTAGQERFRSVTHAY 67 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccC-------------CcEEEEEEeeccchHHHhhhhHhh
Confidence 378999999999999999887754 456789999999999887 789999999999999999999999
Q ss_pred ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHH
Q 019959 104 YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 183 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~ 183 (333)
|+.+|+++++||+++..||++++.|+.+|.++.. ..+.+.++|||+|+.++ |.|.. ++++.+
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k------------~~v~l~llgnk~d~a~e--r~v~~----ddg~kl 129 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAK------------EAVALMLLGNKCDLAHE--RAVKR----DDGEKL 129 (192)
T ss_pred hcccceeeeeeecccchhHHHHHHHHHHHHHHHH------------hhHhHhhhccccccchh--hcccc----chHHHH
Confidence 9999999999999999999999999999999865 46889999999999887 77775 889999
Q ss_pred HHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 184 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 184 ~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++.+| +||.| +|||+|.|++..|..+.+++.+..+
T Consensus 130 a~~y~-------ipfme---------tsaktg~nvd~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 130 AEAYG-------IPFME---------TSAKTGFNVDLAFLAIAEELKKLKM 164 (192)
T ss_pred HHHHC-------CCcee---------ccccccccHhHHHHHHHHHHHHhcc
Confidence 99999 68999 9999999999999999999887654
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=218.35 Aligned_cols=162 Identities=24% Similarity=0.366 Sum_probs=136.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|+++.+...+.+|++. ...+.+.++ +..+.+.||||+|+++|..++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVD-------------GQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEEC-------------CEEEEEEEEECCCccccchHH
Confidence 379999999999999999999999998888888773 445566655 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++++|++|+|||++++.+|+.+..|+..+..... ..++|++|||||+|+... +.+. .+++
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~----~~~~ 129 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-----------TENVPMVLVGNKCDLEDE--RVVS----REEG 129 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--ceec----HHHH
Confidence 9999999999999999999999999999999877632 137899999999999764 3444 3667
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+++.++ ++|+| +||++|.|++++|+.+.+.+
T Consensus 130 ~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 130 QALARQWG-------CPFYE---------TSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HHHHHHcC-------CeEEE---------ecCCCCCCHHHHHHHHHHhc
Confidence 77877766 46888 99999999999999887654
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=229.51 Aligned_cols=163 Identities=23% Similarity=0.343 Sum_probs=141.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|||++|||||||+++|+.+.+...+.+|+|.++....+..+ +..+.+.||||+|+++|..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~ 77 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-------------CGKIRFYCWDTAGQEKFGG 77 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEEC-------------CeEEEEEEEECCCchhhhh
Confidence 667899999999999999999999999999999999999887777665 4578999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++++|++|+|||++++.+|+.+..|+.++.... .++|++|||||+|+.. +.+.. +
T Consensus 78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-------------~~~piilvgNK~Dl~~---~~v~~----~ 137 (219)
T PLN03071 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKN---RQVKA----K 137 (219)
T ss_pred hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-------------CCCcEEEEEEchhhhh---ccCCH----H
Confidence 99999999999999999999999999999999998764 3799999999999964 33432 3
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.+ ++++..+ ++|+| |||++|.|++++|+.+++.+..
T Consensus 138 ~~-~~~~~~~-------~~~~e---------~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 138 QV-TFHRKKN-------LQYYE---------ISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred HH-HHHHhcC-------CEEEE---------cCCCCCCCHHHHHHHHHHHHHc
Confidence 33 6666554 56888 9999999999999999887754
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=217.86 Aligned_cols=162 Identities=22% Similarity=0.358 Sum_probs=137.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|+|++|||||||+++|+.+.+...+.+|++..+ .+.+.++ +..+.+.||||+|+++|..++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVD-------------GQQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC-------------CEEEEEEEEECCCcccchhHH
Confidence 47999999999999999999999988888888887665 3556554 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||+++..+|+.+..|+..+..... ..++|++|||||+|+... +.+. .+++
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~----~~~~ 129 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-----------TEDVPMILVGNKCDLEDE--RVVG----KEQG 129 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECCcchhc--cEEc----HHHH
Confidence 9999999999999999999999999999999876532 247999999999999764 3444 2567
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.++++.++ ++|+| |||++|.|++++|+.+.+.+
T Consensus 130 ~~~~~~~~-------~~~~~---------~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 130 QNLARQWG-------CAFLE---------TSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHHHHhC-------CEEEE---------eeCCCCCCHHHHHHHHHHHh
Confidence 77887776 46888 99999999999999998765
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=223.44 Aligned_cols=167 Identities=26% Similarity=0.430 Sum_probs=146.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|++..+...+.+|++.++..+.+.++ +..+.+.|||++|++.+..+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~l~D~~G~~~~~~~ 71 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-------------GERVKLQIWDTAGQERFRTI 71 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEEC-------------CEEEEEEEEeCCCchhHHHH
Confidence 46899999999999999999999999988889999998888887765 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++++|+.+..|+..+.... ..+|++|||||+|+... +.+. .++
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~-------------~~~piivVgNK~Dl~~~--~~~~----~~~ 132 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-------------DDVCKVLVGNKNDDPER--KVVE----TED 132 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECcccccc--cccC----HHH
Confidence 9999999999999999999999999999999987764 36899999999999764 3444 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+..+++.++ ++|+| +||++|.|++++|+.+.+.+++...
T Consensus 133 ~~~~~~~~~-------~~~~e---------~Sa~~~~gi~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 133 AYKFAGQMG-------ISLFE---------TSAKENINVEEMFNCITELVLRAKK 171 (199)
T ss_pred HHHHHHHcC-------CEEEE---------EECCCCcCHHHHHHHHHHHHHHhhh
Confidence 888887766 45778 9999999999999999999887644
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=220.08 Aligned_cols=165 Identities=25% Similarity=0.472 Sum_probs=144.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.+|||+|++++..++.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~g~~~~~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIE-------------NKIIKLQIWDTNGQERFRSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEECCCcHHHHhhHH
Confidence 589999999999999999999999988889999998888888775 4578899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++++|+++..|+.++..... .++|++|||||+|+.+. +.+.. +.++
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~------------~~~~~ivv~nK~Dl~~~--~~v~~----~~~~ 129 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR------------ENVIKVIVANKSDLVNN--KVVDS----NIAK 129 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECCCCccc--ccCCH----HHHH
Confidence 999999999999999999999999999999987642 35899999999999865 44553 6778
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
.+++..+ ++|+| +||++|.|++++|+.+++.+.++.
T Consensus 130 ~~~~~~~-------~~~~e---------vSa~~~~~i~~~f~~l~~~~~~~~ 165 (188)
T cd04125 130 SFCDSLN-------IPFFE---------TSAKQSINVEEAFILLVKLIIKRL 165 (188)
T ss_pred HHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 8888776 46788 999999999999999999987654
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=222.48 Aligned_cols=169 Identities=24% Similarity=0.337 Sum_probs=141.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|++|||||||+++|+.+.|...+.+|++..+ .+.+.++ +..+.++||||+|+++|..++..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVD-------------GQPCMLEVLDTAGQEEYTALRDQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEEC-------------CEEEEEEEEECCCchhhHHHHHH
Confidence 689999999999999999999999888888887655 3444454 56788999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
+++.+|++|+|||+++..||+.+..|+..+...... ...++|++|||||+|+.+. +.+.. +++..
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---------~~~~~piilvgNK~Dl~~~--~~v~~----~~~~~ 131 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDE---------SAADVPIMIVGNKCDKVYE--REVST----EEGAA 131 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcc---------cCCCCCEEEEEEChhcccc--CccCH----HHHHH
Confidence 999999999999999999999999999998765321 0136899999999999764 45553 66778
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhcc
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFS 236 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~~ 236 (333)
+++.++ ++|+| +||++|.|++++|+.+.+.+..+....
T Consensus 132 ~~~~~~-------~~~~e---------~SAk~~~~v~~l~~~l~~~l~~~~~~~ 169 (190)
T cd04144 132 LARRLG-------CEFIE---------ASAKTNVNVERAFYTLVRALRQQRQGG 169 (190)
T ss_pred HHHHhC-------CEEEE---------ecCCCCCCHHHHHHHHHHHHHHhhccc
Confidence 888777 45778 999999999999999999887766543
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=225.68 Aligned_cols=169 Identities=23% Similarity=0.422 Sum_probs=148.9
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
..+.+||+|||++|||||||+++|++..+...+.+|++.++..+.+.++ +..+.+.||||+|++++.
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~-------------~~~~~l~l~Dt~G~~~~~ 75 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-------------GKTVKAQIWDTAGQERYR 75 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-------------CEEEEEEEEECCCcHHHH
Confidence 4567999999999999999999999999988889999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.++++|+|||++++.+|+++..|+..+..... .++|+++||||+|+... +.+..
T Consensus 76 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piiiv~nK~Dl~~~--~~~~~---- 137 (216)
T PLN03110 76 AITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD------------SNIVIMMAGNKSDLNHL--RSVAE---- 137 (216)
T ss_pred HHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC------------CCCeEEEEEEChhcccc--cCCCH----
Confidence 9999999999999999999999999999999999887642 37999999999999765 55553
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.++.++..++ ++|+| +||++|.|++++|+.++..+.+..
T Consensus 138 ~~~~~l~~~~~-------~~~~e---------~SA~~g~~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 138 EDGQALAEKEG-------LSFLE---------TSALEATNVEKAFQTILLEIYHII 177 (216)
T ss_pred HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 67888887665 57888 999999999999999998887643
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=216.10 Aligned_cols=163 Identities=28% Similarity=0.486 Sum_probs=141.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|+++.+...+.++.+.++..+.+.++ +..+.+.||||+|++++..+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~D~~G~~~~~~~ 68 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIE-------------GKRVKLQIWDTAGQERFRTI 68 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEEC-------------CEEEEEEEEECCChHHHHHH
Confidence 45899999999999999999999999988888898888888888775 55688999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...+++.+|++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+... +.+. .++
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ivv~nK~Dl~~~--~~~~----~~~ 130 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA------------SNVVLLLIGNKCDLEEQ--REVL----FEE 130 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC------------CCCcEEEEEECcccccc--cccC----HHH
Confidence 99999999999999999999999999999999987532 37899999999999765 3444 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+..+++.+++ .+++| +||++|.|++++++.+.+.
T Consensus 131 ~~~~~~~~~~------~~~~e---------~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 131 ACTLAEKNGM------LAVLE---------TSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HHHHHHHcCC------cEEEE---------EECCCCCCHHHHHHHHHHh
Confidence 8888888775 24677 9999999999999988764
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=221.58 Aligned_cols=166 Identities=22% Similarity=0.366 Sum_probs=142.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.+...+.+|++.++ .+.+.++ +..+.++||||+|+++|..+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVID-------------EETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEEC-------------CEEEEEEEEeCCCCccchhh
Confidence 468999999999999999999999999888889888766 4556665 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++++|+.+..|+..+..... ..++|+++||||+|+... +.+.. ++
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-----------~~~~piiiv~nK~Dl~~~--~~i~~----~~ 132 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-----------KDRVPMILVGNKCDLDSE--RQVST----GE 132 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--cccCH----HH
Confidence 99999999999999999999999999999999876632 137899999999999754 44553 66
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+..+++.++ ++|+| |||++|.|++++|+.+.+.+.+.
T Consensus 133 ~~~~~~~~~-------~~~~e---------~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 133 GQELAKSFG-------IPFLE---------TSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred HHHHHHHhC-------CEEEE---------eeCCCCCCHHHHHHHHHHHHHHH
Confidence 778887766 46888 99999999999999999887765
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=214.39 Aligned_cols=163 Identities=24% Similarity=0.479 Sum_probs=141.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|+++.+...+.++++.++..+.+..+ +..+.+.+||++|++++..+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~ 68 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQID-------------GKTIKAQIWDTAGQERYRAI 68 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-------------CEEEEEEEEeCCChHHHHHH
Confidence 45899999999999999999999999988888999998888888775 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.++++|+|||++++.+|+.+..|+.++..... .++|++|||||+|+... +.+. .++
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~pi~vv~nK~Dl~~~--~~~~----~~~ 130 (165)
T cd01868 69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD------------SNIVIMLVGNKSDLRHL--RAVP----TEE 130 (165)
T ss_pred HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--ccCC----HHH
Confidence 99999999999999999999999999999999988742 25899999999999765 4444 367
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
...++...+ ++|+| +||++|.|++++++.++..+
T Consensus 131 ~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 131 AKAFAEKNG-------LSFIE---------TSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHHh
Confidence 778877655 56888 99999999999999887654
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=215.63 Aligned_cols=167 Identities=26% Similarity=0.452 Sum_probs=143.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.|||++|++++..
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~i~D~~G~~~~~~ 69 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-------------GHFVTLQIWDTAGQERFRS 69 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEEC-------------CeEEEEEEEeCCChHHHHH
Confidence 356899999999999999999999999988888899988877777775 6788999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++++|++|+|||++++++|+.+..|+.++....... ...++|++|||||+|+.. +.+. .+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--------~~~~~piilv~nK~Dl~~---~~~~----~~ 134 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVK--------EPESFPFVVLGNKNDIPE---RQVS----TE 134 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccc--------cCCCCcEEEEEECccccc---cccC----HH
Confidence 99999999999999999999999999999999887654211 114689999999999973 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
++++++++++. ++|+| +||++|.|++++|+.+++.
T Consensus 135 ~~~~~~~~~~~------~~~~e---------~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 135 EAQAWCRENGD------YPYFE---------TSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHCCC------CeEEE---------EECCCCCCHHHHHHHHHhh
Confidence 78899988874 36777 9999999999999888764
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=225.50 Aligned_cols=169 Identities=21% Similarity=0.351 Sum_probs=139.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|||++|||||||+++|+++.|.. +.+|++.++..+.+ ..+.+.||||+|+++|..++.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~-----------------~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW-----------------GPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe-----------------eEEEEEEEeCCCcccchhhHH
Confidence 589999999999999999999999864 57888877655443 246799999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc---------------
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK--------------- 166 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~--------------- 166 (333)
.+++++|++|+|||++++.||+++..|+..+.+... .++|+||||||+||...
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~------------~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~ 130 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTAN------------EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVS 130 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECccccccccccccccccccccc
Confidence 999999999999999999999999988888776532 36899999999999751
Q ss_pred --cCCccCcccHHHHHHHHHHHcCCC--------CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 167 --EGTRGSSGNLVDAARQWVEKQGLL--------PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 167 --~~r~v~~~~~~~~~~~~~~~~~~~--------~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
..+.|+. +++++|+++.+.. ... .++|+| |||++|.||+++|..+++.++....
T Consensus 131 ~~~~r~v~~----~e~~~~a~~~~~~~~~~~~~~~~~-~~~~~E---------~SA~tg~~V~elf~~i~~~~~~~~~ 194 (220)
T cd04126 131 PEDQRQVTL----EDAKAFYKRINKYKMLDEDLSPAA-EKMCFE---------TSAKTGYNVDELFEYLFNLVLPLIL 194 (220)
T ss_pred ccccccCCH----HHHHHHHHHhCccccccccccccc-cceEEE---------eeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1366664 8899999987621 111 257888 9999999999999999988876443
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=214.20 Aligned_cols=160 Identities=23% Similarity=0.434 Sum_probs=136.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.++.+.++....+.++ +..+.+++|||+|+++|..++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFE-------------GKTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEEC-------------CEEEEEEEEeCCCchhhhhhhH
Confidence 589999999999999999999999988888888877776666665 5778999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.+|+++..|+..+.... .++|++||+||+|+... + .++..
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~p~ivv~nK~Dl~~~----~-----~~~~~ 125 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-------------PEIPCIVVANKIDLDPS----V-----TQKKF 125 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-------------CCCcEEEEEECccCchh----H-----HHHHH
Confidence 99999999999999999999999999999997763 36899999999998532 1 24455
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+++..+ +++++ +||++|.|++++|+.+++.++..
T Consensus 126 ~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 126 NFAEKHN-------LPLYY---------VSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHhc
Confidence 6666554 46777 99999999999999998877653
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=213.19 Aligned_cols=160 Identities=24% Similarity=0.394 Sum_probs=139.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.+.. .+..+.+.||||+|+++|..++.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------~~~~~~~~i~D~~G~~~~~~~~~ 69 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQ-----------SDEDVRLMLWDTAGQEEFDAITK 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcC-----------CCCEEEEEEeeCCchHHHHHhHH
Confidence 5899999999999999999999999888899999988777777651 14578899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++++|||++++++|+.+..|+..+.... .++|+++|+||+|+... +.++ .+++.
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-------------~~~p~iiv~nK~Dl~~~--~~v~----~~~~~ 130 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-------------GDIPMVLVQTKIDLLDQ--AVIT----NEEAE 130 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEChhcccc--cCCC----HHHHH
Confidence 99999999999999999999999999999987654 37899999999999765 4455 36788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.+++.++ ++++| +||++|.|++++++.+..
T Consensus 131 ~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 131 ALAKRLQ-------LPLFR---------TSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHH
Confidence 8888877 46888 999999999998888764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=215.40 Aligned_cols=160 Identities=23% Similarity=0.377 Sum_probs=137.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+.+.+...+.+|++.++....+..+ +..+.+.+|||+|++++..++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTN-------------RGKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEECCCChhhccccH
Confidence 599999999999999999999998888889999988877666554 5678999999999999999888
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||++++++|+.+..|+.++..... ++|+++||||+|+... .+. ....
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-------------~~piiiv~nK~Dl~~~---~~~-----~~~~ 126 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-------------NIPIVLCGNKVDIKDR---KVK-----AKQI 126 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-------------CCcEEEEEEchhcccc---cCC-----HHHH
Confidence 999999999999999999999999999999988752 7999999999999732 332 3345
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++..+ ++|+| |||++|.|++++|+.|.+.+++
T Consensus 127 ~~~~~~~-------~~~~e---------~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 127 TFHRKKN-------LQYYE---------ISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred HHHHHcC-------CEEEE---------EeCCCCCChHHHHHHHHHHHHh
Confidence 5665543 56888 9999999999999999988764
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=218.54 Aligned_cols=165 Identities=24% Similarity=0.439 Sum_probs=142.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
+||+|+|++|||||||+++|+++.+.. .+.+|++.++..+.+.++ +..+.+.||||+|++++..++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVD-------------GVKVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEEC-------------CEEEEEEEEeCCCcHHHHHhh
Confidence 589999999999999999999998864 677888888877777765 567899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||++++++|+++..|+..+..... .++|+++||||+|+... +.+.. +++
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~------------~~~piiiv~NK~Dl~~~--~~~~~----~~~ 129 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQ------------EDVVIMLLGNKADMSGE--RVVKR----EDG 129 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEEcccchhc--cccCH----HHH
Confidence 9999999999999999999999999999999987742 36899999999999754 44543 677
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.+++.++ ++|+| +||++|.|++++|+.+.+.+....
T Consensus 130 ~~l~~~~~-------~~~~e---------~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 130 ERLAKEYG-------VPFME---------TSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred HHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 88887776 46888 999999999999999998887653
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=213.59 Aligned_cols=165 Identities=24% Similarity=0.440 Sum_probs=143.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|||++|||||||+++|++..+...+.++.+.++..+.+.++ +..+.+.|||++|++++..+
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~ 69 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-------------GKQIKLQIWDTAGQESFRSI 69 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEECCCcHHHHHH
Confidence 45899999999999999999999999888888899998888888775 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...+++.+|++|+|||++++.+|+.+..|+.++..... .++|++|||||+|+... +.++ .++
T Consensus 70 ~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~pvivv~nK~Dl~~~--~~~~----~~~ 131 (168)
T cd01866 70 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN------------SNMTIMLIGNKCDLESR--REVS----YEE 131 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEECcccccc--cCCC----HHH
Confidence 99999999999999999999999999999999987642 36899999999999854 3454 367
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++.++...+ ++|+| +||+++.|++++|+.+.+.+.+
T Consensus 132 ~~~~~~~~~-------~~~~e---------~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 132 GEAFAKEHG-------LIFME---------TSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 888888776 45788 9999999999999998887653
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=214.10 Aligned_cols=162 Identities=25% Similarity=0.375 Sum_probs=136.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|+|++|||||||+++++++.+...+.+|++ ++....+.++ +..+.+.||||+|+++|..++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVD-------------SSPSVLEILDTAGTEQFASMR 66 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEEC-------------CEEEEEEEEECCCcccccchH
Confidence 47999999999999999999999999888888875 4555666665 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++++|++|+|||++++.+|+++..|+..+..... ..++|+++||||+|+... +.+. .+++
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piviv~nK~Dl~~~--~~~~----~~~~ 129 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-----------YEKVPIILVGNKVDLESE--REVS----SAEG 129 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECccchhc--CccC----HHHH
Confidence 9999999999999999999999999999999877632 137899999999999754 3444 2567
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+++.++ ++++| |||++|.|++++|+.+.+.+
T Consensus 130 ~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 130 RALAEEWG-------CPFME---------TSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHHHhC-------CEEEE---------ecCCCCCCHHHHHHHHHHhc
Confidence 77877766 46777 99999999999998887643
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=221.34 Aligned_cols=155 Identities=25% Similarity=0.365 Sum_probs=135.5
Q ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccC
Q 019959 27 VGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQ 106 (333)
Q Consensus 27 vG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ 106 (333)
||+.|||||||+++|+++.|...+.+|+|.++..+.+.++ +..+.+.||||+|+++|..++..+|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~-------------~~~~~l~iwDt~G~e~~~~l~~~~~~~ 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-------------RGPIRFNVWDTAGQEKFGGLRDGYYIQ 67 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-------------CEEEEEEEEECCCchhhhhhhHHHhcC
Confidence 6999999999999999999988899999999988888775 567999999999999999999999999
Q ss_pred CcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHH
Q 019959 107 INGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEK 186 (333)
Q Consensus 107 ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~ 186 (333)
+|++|+|||++++.||+.+..|+.++.+.+ .++|++|||||+|+.. +.+. .+..++++.
T Consensus 68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-------------~~~piilvgNK~Dl~~---~~v~-----~~~~~~~~~ 126 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVC-------------ENIPIVLCGNKVDVKD---RKVK-----AKSITFHRK 126 (200)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECccccc---ccCC-----HHHHHHHHH
Confidence 999999999999999999999999998864 2799999999999964 3444 223467766
Q ss_pred cCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 187 QGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 187 ~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.+ ++|+| |||++|.||+++|+.+.+.+.+
T Consensus 127 ~~-------~~~~e---------~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 127 KN-------LQYYD---------ISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred cC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 55 56888 9999999999999999988764
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=221.28 Aligned_cols=167 Identities=19% Similarity=0.248 Sum_probs=127.2
Q ss_pred ceEEEEECCCCCCHHHHHH-HHHcC-----CCCCCCCcccce-eEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 21 QVRVLVVGDSGVGKTSLVN-LIVKG-----SSFSRPSQTIGC-TVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~-~l~~~-----~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
.+||+++|+.|||||||+. +++++ .|...+.+|++. +.......+.. ......++..+.+.||||+|+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~-----~~~~~~~~~~v~l~iwDTaG~ 76 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLE-----RSRDVVDGVSVSLRLWDTFGD 76 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeecc-----ccceeeCCEEEEEEEEeCCCC
Confidence 4799999999999999996 66554 345667888863 33222210000 000002367899999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc------
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK------ 166 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~------ 166 (333)
++ .+...+|+++|++|+|||++++.||+++. .|+.++.... .++|++|||||+||.+.
T Consensus 77 ~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-------------~~~piilvgNK~DL~~~~~~~~~ 141 (195)
T cd01873 77 HD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-------------PRVPVILVGCKLDLRYADLDEVN 141 (195)
T ss_pred hh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEchhccccccchhh
Confidence 76 35567899999999999999999999996 6999987764 26899999999999742
Q ss_pred -----------cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 167 -----------EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 167 -----------~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
..+.|+. ++++++|+++| ++|+| |||++|.||+++|+.+++
T Consensus 142 ~~~~~~~~~~~~~~~V~~----~e~~~~a~~~~-------~~~~E---------~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 142 RARRPLARPIKNADILPP----ETGRAVAKELG-------IPYYE---------TSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred hcccccccccccCCccCH----HHHHHHHHHhC-------CEEEE---------cCCCCCCCHHHHHHHHHH
Confidence 1256664 88999999998 46888 999999999999988875
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=219.61 Aligned_cols=163 Identities=23% Similarity=0.316 Sum_probs=136.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|++|||||||+++|+++.|...+.+|++..+. +.+.++ +..+.+.||||+|+++|..++..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~-------------~~~~~l~i~Dt~G~~~~~~l~~~ 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVD-------------GLHIELSLWDTAGQEEFDRLRSL 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEEC-------------CEEEEEEEEECCCChhccccccc
Confidence 8999999999999999999999998888889877664 344444 56789999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC----------Ccc
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG----------TRG 171 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~----------r~v 171 (333)
+++.+|++|+|||+++++||+.+. .|+..+.... .++|++|||||+||..... +.+
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~-------------~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v 134 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC-------------PGVKLVLVALKCDLREARNERDDLQRYGKHTI 134 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEChhhccChhhHHHHhhccCCCC
Confidence 999999999999999999999986 6999988763 3789999999999976421 123
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
. .+++.++++..+. ++|+| |||++|.|++++|+.+.+.++.
T Consensus 135 ~----~~~~~~~~~~~~~------~~~~e---------~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 135 S----YEEGLAVAKRINA------LRYLE---------CSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred C----HHHHHHHHHHcCC------CEEEE---------ccCCcCCCHHHHHHHHHHHHhc
Confidence 3 3677888887763 46788 9999999999999999887763
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=213.03 Aligned_cols=163 Identities=28% Similarity=0.487 Sum_probs=140.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh-hh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK-DC 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~-~~ 99 (333)
.+||+++|++|||||||+++|+.+.+...+.++++.++..+.+.++ +..+.+.||||+|++++. .+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~ 68 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEID-------------GERIKVQLWDTAGQERFRKSM 68 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEEC-------------CeEEEEEEEeCCChHHHHHhh
Confidence 5799999999999999999999999988888999988888888776 567899999999999987 57
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...+++++|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+... +.+.. ++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~iiv~nK~Dl~~~--~~~~~----~~ 131 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-----------PNEVPRILVGNKCDLREQ--IQVPT----DL 131 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-----------CCCCCEEEEEECccchhh--cCCCH----HH
Confidence 78889999999999999999999999999999987642 137999999999999765 55553 67
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeecc---CcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKE---ARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~---g~~v~~~~~~l~~~l 229 (333)
+.++++..+ ++|+| |||++ +.|++++|..+++.+
T Consensus 132 ~~~~~~~~~-------~~~~e---------~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 132 AQRFADAHS-------MPLFE---------TSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHcC-------CcEEE---------EeccCCcCCCCHHHHHHHHHHHh
Confidence 788887765 57888 99999 888888888887654
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=211.36 Aligned_cols=160 Identities=25% Similarity=0.481 Sum_probs=140.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.++.+.++..+.+.++ +..+.++|||++|+++|..++.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG-------------GKRVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-------------CEEEEEEEEECcchHHHHHhHH
Confidence 599999999999999999999999988888999988888877775 5678999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++|+|||++++.+|..+..|+.++..... +++|++||+||+|+... +.+. .+++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iivv~nK~D~~~~--~~~~----~~~~~ 129 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS------------PNIVVILVGNKSDLADQ--REVT----FLEAS 129 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEEchhcchh--ccCC----HHHHH
Confidence 999999999999999999999999999998876642 47899999999999764 4455 37788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+++.++ ++|+| +||+++.|++++|+.+++.
T Consensus 130 ~~~~~~~-------~~~~~---------~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 130 RFAQENG-------LLFLE---------TSALTGENVEEAFLKCARS 160 (161)
T ss_pred HHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHh
Confidence 8888877 35777 9999999999999988764
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=213.14 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=128.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|+.|||||||+++|+.+.|...+.++ +..+ .+.+.++ +..+.+.||||+|++..
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~-------------~~~~~l~i~D~~g~~~~----- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVD-------------GQSHLLLIRDEGGAPDA----- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEEC-------------CEEEEEEEEECCCCCch-----
Confidence 58999999999999999999999887766555 3344 4566665 56788999999999753
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++|+|||++++.||+++..|+.++..... ..++|++|||||+|+.....+.++. ++++
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-----------~~~~piilvgnK~Dl~~~~~~~v~~----~~~~ 125 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-----------ISEIPLILVGTQDAISESNPRVIDD----ARAR 125 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEeeHHHhhhcCCcccCH----HHHH
Confidence 457889999999999999999999999999987642 1368999999999996544466774 7788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
++++..+ .++|+| |||++|.||+++|+.+.+.
T Consensus 126 ~~~~~~~------~~~~~e---------~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 126 QLCADMK------RCSYYE---------TCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHhC------CCcEEE---------EecCCCCCHHHHHHHHHhh
Confidence 8988764 256888 9999999999999888754
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-29 Score=219.36 Aligned_cols=168 Identities=26% Similarity=0.449 Sum_probs=147.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|++..+...+.+|++.++....+.++ +..+.+.+|||+|++++..+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~-------------~~~i~l~l~Dt~G~~~~~~~ 71 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-------------NKPIKLQIWDTAGQESFRSI 71 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEEC-------------CEEEEEEEEeCCCcHHHHHH
Confidence 46899999999999999999999999988888999999888888776 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++.+|+++..|+..+..... .++|+++|+||+|+... +.++ .++
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~------------~~~piiiv~nK~Dl~~~--~~~~----~~~ 133 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN------------ANMTIMLIGNKCDLAHR--RAVS----TEE 133 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECccCccc--cCCC----HHH
Confidence 99999999999999999999999999999998876532 36899999999999865 4555 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++++.++ ++|+| +||+++.|++++|+++++.++++..
T Consensus 134 ~~~~~~~~~-------~~~~e---------~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 134 GEQFAKEHG-------LIFME---------ASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 889998877 46888 9999999999999999998877543
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=217.39 Aligned_cols=188 Identities=43% Similarity=0.731 Sum_probs=144.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||+++|+++.|...+.+|+|+++..+.+.++.. ..++..+.++||||+|+++|..++.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~--------~~~~~~~~l~IwDtaG~e~~~~l~~ 72 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEG--------TPEEKTFFVELWDVGGSESVKSTRA 72 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCC--------CCCCcEEEEEEEecCCchhHHHHHH
Confidence 59999999999999999999999999999999999998888877521 1235679999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCC-------CCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLA-------SGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~-------~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
.+|+++|++|+|||++++.||+++..|+.++......+.+.. .......++|+||||||+|+.++ |.++..
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~--r~~~~~ 150 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE--KESSGN 150 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh--cccchH
Confidence 999999999999999999999999999999976532111100 00011247999999999999865 566654
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC------HHHHHHHHHHHHHHHHhc
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY------DKEAVMKFFRMLIRRRYF 235 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~------v~~~~~~l~~~l~~~~~~ 235 (333)
........+|++.|+ |.++ .++++... ....+..+|+.+++++++
T Consensus 151 ~~~~~~~~ia~~~~~-------~~i~---------~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (202)
T cd04102 151 LVLTARGFVAEQGNA-------EEIN---------LNCTNGRLLAAGSSDAVKLSRFFDKVIEKRYF 201 (202)
T ss_pred HHhhHhhhHHHhcCC-------ceEE---------EecCCcccccCCCccHHHHHHHHHHHHHhhhc
Confidence 334556678888885 4555 34432221 235668899999988774
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=209.03 Aligned_cols=161 Identities=24% Similarity=0.398 Sum_probs=135.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|+|++|||||||+++|+++.+...+.+|.+..+ .+.+.++ +..+.+.+|||+|++++..++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID-------------GETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEEC-------------CEEEEEEEEECCCCcchHHHH
Confidence 47999999999999999999999999888888887655 4555554 566789999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++++|||+++..+|+.+..|+..+.+... ..++|++||+||+|+... .+. .+++
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piivv~nK~Dl~~~---~~~----~~~~ 128 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-----------SDDVPMVLVGNKCDLAAR---TVS----SRQG 128 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc---eec----HHHH
Confidence 9999999999999999999999999999999887632 137899999999999752 333 3667
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.++++.++ ++++| +||++|.|++++|+.+.+.+
T Consensus 129 ~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 129 QDLAKSYG-------IPYIE---------TSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred HHHHHHhC-------CeEEE---------ecCCCCCCHHHHHHHHHHHh
Confidence 78887776 46888 99999999999998887643
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=215.01 Aligned_cols=168 Identities=21% Similarity=0.323 Sum_probs=140.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.+|++.++... +... ++..+.+.||||+|+++|..++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~------------~~~~~~l~i~Dt~G~~~~~~~~~ 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGP------------NGKIIELALWDTAGQEEYDRLRP 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEec------------CCcEEEEEEEECCCchhHHHHHH
Confidence 5899999999999999999999999888888888776443 4332 14678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc--CCccCcccHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE--GTRGSSGNLVD 178 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~--~r~v~~~~~~~ 178 (333)
.+++++|++|+|||++++.||+++. .|+..+.... .++|+++||||+|+.... .+.+. .+
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~v~----~~ 130 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-------------PGTPIMLVGLKTDLRKDKNLDRKVT----PA 130 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEeChhhhhCccccCCcC----HH
Confidence 9999999999999999999999985 5988886653 378999999999997542 12344 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++++..+++. +|+| |||++|.|++++|+.+++.++....
T Consensus 131 ~~~~~~~~~~~~------~~~e---------~Sa~~~~~v~~~f~~l~~~~~~~~~ 171 (187)
T cd04132 131 QAESVAKKQGAF------AYLE---------CSAKTMENVEEVFDTAIEEALKKEG 171 (187)
T ss_pred HHHHHHHHcCCc------EEEE---------ccCCCCCCHHHHHHHHHHHHHhhhh
Confidence 888999888852 5777 9999999999999999999887654
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=209.47 Aligned_cols=161 Identities=25% Similarity=0.370 Sum_probs=137.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC--CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG--SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+||+|+|++|||||||+++|..+ .+...+.+|+|.++..+.+.++. +..+.+.+|||+|++.+..+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~------------~~~~~l~i~Dt~G~~~~~~~ 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT------------DNTVELFIFDSAGQELYSDM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC------------CCEEEEEEEECCCHHHHHHH
Confidence 58999999999999999999865 68888999999998888777642 56789999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...++.++|++|+|||++++.+|+.+..|+..+.... .++|+++|+||+|+... +.+.. ..
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~ilv~nK~Dl~~~--~~~~~----~~ 129 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-------------KHMPGVLVGNKMDLADK--AEVTD----AQ 129 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECcccccc--cCCCH----HH
Confidence 9999999999999999999999999999999987763 26899999999999755 34442 45
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++.++..++ ++|+| |||++|.|++++++.+++.+
T Consensus 130 ~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 130 AQAFAQANQ-------LKFFK---------TSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHHHHHHcC-------CeEEE---------EeCCCCCChHHHHHHHHHHh
Confidence 566666655 46778 99999999999998888764
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-29 Score=209.86 Aligned_cols=162 Identities=24% Similarity=0.384 Sum_probs=135.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|++..+...+.+|++..+ .+.+.++ +..+.+.+|||+|++++..++.
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEID-------------GEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEEC-------------CEEEEEEEEECCCcccchHHHH
Confidence 5999999999999999999999988888888776433 4555554 5678999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++|+|||++++++|+.+..|+..+..... ..++|+++||||+|+... +.+. .+.+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~pii~v~nK~Dl~~~--~~~~----~~~~~ 129 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-----------RDDVPIVLVGNKCDLESE--RVVS----TEEGK 129 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--ceEc----HHHHH
Confidence 999999999999999999999999999988876532 136899999999999764 4444 36677
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++++.++ ++|+| +||++|.|++++|+.+++.+.
T Consensus 130 ~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 130 ELARQWG-------CPFLE---------TSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHHcC-------CEEEE---------eecCCCCCHHHHHHHHHHHHh
Confidence 8887766 46888 999999999999999887654
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-29 Score=210.59 Aligned_cols=161 Identities=23% Similarity=0.267 Sum_probs=133.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.|...+.+|++..+ .+.+..+ ...+.+.+|||+|+++|..++.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCS-------------KNICTLQITDTTGSHQFPAMQR 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEEC-------------CEEEEEEEEECCCCCcchHHHH
Confidence 7999999999999999999999999888888877555 4444443 4578899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||++++.+|+++..|+..+....... ..++|++|||||+|+... +.+.. +++.
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~---------~~~~piilv~nK~Dl~~~--~~v~~----~~~~ 132 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNN---------IEKIPIMLVGNKCDESHK--REVSS----NEGA 132 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCC---------CCCCCEEEEEECcccccc--CeecH----HHHH
Confidence 99999999999999999999999999998887653211 147999999999999764 45553 6677
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.++...+ ++|+| |||++|.|++++|+.+++
T Consensus 133 ~~~~~~~-------~~~~e---------~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 133 ACATEWN-------CAFME---------TSAKTNHNVQELFQELLN 162 (165)
T ss_pred HHHHHhC-------CcEEE---------eecCCCCCHHHHHHHHHh
Confidence 7777665 46788 999999999999988864
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=214.49 Aligned_cols=166 Identities=23% Similarity=0.359 Sum_probs=141.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
+||+|+|++|||||||+++|+++.+.. .+.+|++.++..+.+.++ +..+.+.||||+|++++..++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVG-------------ERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEEC-------------CEEEEEEEEECCCchhhhhhh
Confidence 589999999999999999999998874 688899988888888776 677899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc--CCccCcccHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE--GTRGSSGNLVD 178 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~--~r~v~~~~~~~ 178 (333)
..++.++|++|+|||++++.+|+++..|+..+.... .++|+++|+||+|+.... .+.+. .+
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~~~~~~~v~----~~ 130 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-------------EHCKIYLCGTKSDLIEQDRSLRQVD----FH 130 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-------------CCCCEEEEEEcccccccccccCccC----HH
Confidence 999999999999999999999999999999987753 268999999999986432 13343 25
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++.+++..++ ++++| +||++|.|++++++.+.+.+++..
T Consensus 131 ~~~~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 131 DVQDFADEIK-------AQHFE---------TSSKTGQNVDELFQKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 6777777765 45777 999999999999999998887654
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=208.05 Aligned_cols=162 Identities=21% Similarity=0.351 Sum_probs=135.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+++|++|||||||+++|+++.+...+.+|.+..+ .+.+.++ +..+.+.+|||+|++++..++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEID-------------GQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEEC-------------CEEEEEEEEECCCCcchhHHH
Confidence 47999999999999999999999988888888877544 4445554 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||+++..+|+.+..|+..+..... ..++|++||+||+|+... +.+. .+++
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piiiv~NK~Dl~~~--~~~~----~~~~ 130 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-----------RDEFPMILVGNKADLEHQ--RKVS----REEG 130 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----------CCCCCEEEEeeCcccccc--ceec----HHHH
Confidence 9999999999999999999999999999999876532 136899999999999764 3444 3667
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.++++.++ ++++| +||++|.|++++|+.+++.+
T Consensus 131 ~~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 131 QELARKLK-------IPYIE---------TSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHHHcC-------CcEEE---------eeCCCCCCHHHHHHHHHHhh
Confidence 88888766 46778 99999999999998887653
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=206.91 Aligned_cols=163 Identities=28% Similarity=0.522 Sum_probs=141.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|++..+...+.++++.++....+.++ +..+.+.+||++|++++..+..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~G~~~~~~~~~ 67 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVD-------------GKRVKLQIWDTAGQERFRSITS 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEECCChHHHHHHHH
Confidence 599999999999999999999999888888898988888878775 5678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++|+|||++++.+++.+..|+..+..+.. .++|+++|+||+|+... +.+. .+.++
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~------------~~~pivvv~nK~D~~~~--~~~~----~~~~~ 129 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYAD------------PNVVIMLVGNKSDLEDQ--RQVS----REEAE 129 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEEchhcccc--cCCC----HHHHH
Confidence 999999999999999999999999999999987742 37999999999998764 3344 36788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++..+ ++++| +||++|.|++++++.+.+.+.+
T Consensus 130 ~~~~~~~-------~~~~e---------~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 130 AFAEEHG-------LPFFE---------TSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred HHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHhh
Confidence 8888776 45777 9999999999999999887754
|
Rab GTPases are implicated in vesicle trafficking. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=212.16 Aligned_cols=161 Identities=19% Similarity=0.302 Sum_probs=135.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhh
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSIL 103 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~ 103 (333)
|+|+|++|||||||+++|+++.+...+.++++..+ ...+.++ +..+.+.+|||+|+++|..++..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVD-------------GKPVELGLWDTAGQEDYDRLRPLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEEC-------------CEEEEEEEEECCCCcccchhchhh
Confidence 68999999999999999999999888888876554 3445554 567889999999999999999999
Q ss_pred ccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC----------CccC
Q 019959 104 YSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG----------TRGS 172 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~----------r~v~ 172 (333)
++++|++|+|||+++++||+.+. .|+..+.... .++|++|||||+|+..... +.++
T Consensus 67 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 133 (174)
T smart00174 67 YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-------------PNTPIILVGTKLDLREDKSTLRELSKQKQEPVT 133 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEecChhhhhChhhhhhhhcccCCCcc
Confidence 99999999999999999999985 6999988764 3789999999999975321 2244
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+++.++++.+++. +|+| |||++|.|++++|+.+.+.++
T Consensus 134 ----~~~~~~~~~~~~~~------~~~e---------~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 134 ----YEQGEALAKRIGAV------KYLE---------CSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred ----HHHHHHHHHHcCCc------EEEE---------ecCCCCCCHHHHHHHHHHHhc
Confidence 37788999998852 5777 999999999999999988764
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=216.95 Aligned_cols=168 Identities=21% Similarity=0.191 Sum_probs=133.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK---- 97 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~---- 97 (333)
+||+|+|++|||||||+++|+++.|...+.+|++.++....+.++ +..+.+.||||+|.+.+.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLS-------------GRVYDLHILDVPNMQRYPGTAG 67 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEEC-------------CEEEEEEEEeCCCcccCCccch
Confidence 589999999999999999999999988888888877766666665 567899999999965432
Q ss_pred ----hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 98 ----DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 98 ----~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
.....+++.+|++|+|||+++++||+.+..|+..+...... ...++|++|||||+|+... +.+..
T Consensus 68 ~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~---------~~~~~piiivgNK~Dl~~~--~~~~~ 136 (198)
T cd04142 68 QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPA---------GNKEPPIVVVGNKRDQQRH--RFAPR 136 (198)
T ss_pred hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhccc---------CCCCCCEEEEEECcccccc--ccccH
Confidence 12334578999999999999999999999999988776310 0147999999999999764 44443
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++.++++.. +++|+| |||++|.|++++|+.+++.+..+
T Consensus 137 ----~~~~~~~~~~~------~~~~~e---------~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 137 ----HVLSVLVRKSW------KCGYLE---------CSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred ----HHHHHHHHHhc------CCcEEE---------ecCCCCCCHHHHHHHHHHHhhcc
Confidence 55666665432 267888 99999999999998888776643
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=210.66 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=137.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
+.+||+|+|++|||||||+++|+++.|. ..+.+|++.++..+.+.++ +..+.+.+||++|++.+..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~-------------~~~~~l~~~d~~g~~~~~~ 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVY-------------GQEKYLILREVGEDEVAIL 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEEC-------------CeEEEEEEEecCCcccccc
Confidence 4689999999999999999999999998 8889999988877777775 5678899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++.++|++|+|||++++.+|+.+..|+..+... .++|+++|+||+|+.+. +.+.. +
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--------------~~~p~iiv~NK~Dl~~~--~~~~~----~ 129 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--------------GEIPCLFVAAKADLDEQ--QQRYE----V 129 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--------------CCCeEEEEEEccccccc--ccccc----c
Confidence 8888999999999999999999999999999876332 26899999999999754 33322 4
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+..++++.+++. ++++ +||++|.|++++|+.+.+.+.
T Consensus 130 ~~~~~~~~~~~~------~~~~---------~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 130 QPDEFCRKLGLP------PPLH---------FSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CHHHHHHHcCCC------CCEE---------EEeccCccHHHHHHHHHHHhh
Confidence 466778887753 2466 999999999999988887764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=209.54 Aligned_cols=160 Identities=20% Similarity=0.281 Sum_probs=134.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||+++|+++.|...+.+|. .+.....+.++ +..+.+.+|||+|+++|..++.
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~~ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVD-------------GKPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEEC-------------CEEEEEEEEECCCChhhccccc
Confidence 589999999999999999999999988888886 44445556654 5678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------CCc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE----------GTR 170 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~----------~r~ 170 (333)
.+++++|++|+|||++++.+|+++. .|+..+.... .++|+++||||+|+.... .+.
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 133 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-------------PKAPIILVGTQADLRTDVNVLIQLARYGEKP 133 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEeeChhhccChhHHHHHhhcCCCC
Confidence 9999999999999999999999984 7998887643 268999999999997532 245
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
|. .++++.+++..++ .+|+| |||++|.|++++|+.++.
T Consensus 134 v~----~~~~~~~a~~~~~------~~~~e---------~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 134 VS----QSRAKALAEKIGA------CEYIE---------CSALTQKNLKEVFDTAIL 171 (173)
T ss_pred cC----HHHHHHHHHHhCC------CeEEE---------EeCCCCCCHHHHHHHHHh
Confidence 55 3788999998885 35777 999999999999987753
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-28 Score=203.78 Aligned_cols=162 Identities=27% Similarity=0.469 Sum_probs=140.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|+|++|||||||+++|+++.+...+.++.+.++..+.+.++ +..+.+.+||++|++++...+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-------------~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-------------DTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEeCCchHHHHHHH
Confidence 4799999999999999999999999888788888888888888776 567899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++++|++|+|||++++++|+.+..|+..+..... ..+|+++|+||+|+... +.+. .+++
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iivv~nK~D~~~~--~~~~----~~~~ 129 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS------------PNIIIALVGNKADLESK--RQVS----TEEA 129 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--CcCC----HHHH
Confidence 9999999999999999999999999999999987742 37899999999998854 3444 3667
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..++..++ ++++| +||++|.|++++++.+++.+
T Consensus 130 ~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 130 QEYADENG-------LLFFE---------TSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHHh
Confidence 77888776 35777 99999999999999988764
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=204.11 Aligned_cols=160 Identities=23% Similarity=0.349 Sum_probs=138.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||+++|++..+...+.++.+.++..+.+.++ +..+.+.+|||+|++++..+..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~D~~G~~~~~~~~~ 67 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLE-------------DKTVRLQLWDTAGQERFRSLIP 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEEC-------------CEEEEEEEEECCCcHHHHHHHH
Confidence 489999999999999999999999988888999999988888775 5668899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++++|+.+..|+..+..... .++|+++|+||+|+... +.+. .++..
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iilv~nK~D~~~~--~~~~----~~~~~ 129 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG------------NDVIIVLVGNKTDLSDK--RQVS----TEEGE 129 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCEEEEEEEChhcccc--CccC----HHHHH
Confidence 999999999999999999999999999999876531 26899999999999643 3444 36677
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+++..+ +++++ +||+++.|++++++.+.+.
T Consensus 130 ~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 130 KKAKELN-------AMFIE---------TSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHHHhC-------CEEEE---------EeCCCCCCHHHHHHHHHHh
Confidence 7777766 45777 9999999999999988764
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=219.71 Aligned_cols=170 Identities=22% Similarity=0.281 Sum_probs=135.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.|...+.+|++ ++..+.+.++ +..+.+.||||+|++.|..++.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~-------------~~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIR-------------GEVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEEC-------------CEEEEEEEEECCCChhhhHHHH
Confidence 5899999999999999999999999888888887 5666667665 5778999999999999999988
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||+++++||+++..|+.++...... +........++|+||||||+|+... +.+.. +++.
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~---~~~~~~~~~~~piIivgNK~Dl~~~--~~v~~----~ei~ 137 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSC---LKNKTKENVKIPMVICGNKADRDFP--REVQR----DEVE 137 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcc---cccccccCCCCcEEEEEECccchhc--cccCH----HHHH
Confidence 8899999999999999999999999999998764210 0000011247999999999999764 44553 5666
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++.... .++|+| +||++|.|++++|+.+++.+
T Consensus 138 ~~~~~~~------~~~~~e---------vSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 138 QLVGGDE------NCAYFE---------VSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHHhcC------CCEEEE---------EeCCCCCCHHHHHHHHHHHh
Confidence 6654332 256788 99999999999999888754
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=210.99 Aligned_cols=172 Identities=26% Similarity=0.439 Sum_probs=142.0
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
..++....+||+|||++|||||||+++|++..+ ..+.++.+.++....+.++ +..+.+.||||+|+
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~-------------~~~~~l~l~Dt~G~ 72 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVG-------------GKRLKLTIWDTAGQ 72 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEEC-------------CEEEEEEEEECCCc
Confidence 344556679999999999999999999998877 4567888888877777765 56788999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
++|..++..+++.+|++|+|||++++++|+++.. |...+..... ..+.|++|||||+|+... +.+.
T Consensus 73 ~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~-----------~~~~~~ilv~NK~Dl~~~--~~i~ 139 (211)
T PLN03118 73 ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST-----------NQDCVKMLVGNKVDRESE--RDVS 139 (211)
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--CccC
Confidence 9999999999999999999999999999999965 7666654421 136799999999999765 3444
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+++..++..++ ++|+| |||++|.|++++|+.+.+.+...
T Consensus 140 ----~~~~~~~~~~~~-------~~~~e---------~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 140 ----REEGMALAKEHG-------CLFLE---------CSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred ----HHHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHhh
Confidence 366777877776 46788 99999999999999999887654
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=203.98 Aligned_cols=164 Identities=22% Similarity=0.356 Sum_probs=138.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+++|++|||||||+++|.++.+...+.+|++..+ .+.+.++ +..+.+++|||+|+++|..++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~ 66 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEID-------------GRQCDLEILDTAGTEQFTAMR 66 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC-------------CEEEEEEEEeCCCcccchhhh
Confidence 47999999999999999999999999888888887554 5666665 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..++..++++|+|||++++++|+.+..|...+..... ..++|+++|+||+|+... +.+. .+++
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piiiv~nK~D~~~~--~~~~----~~~~ 129 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-----------SDNVPMVLVGNKADLEDD--RQVS----REDG 129 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----------CCCCCEEEEEEChhcccc--CccC----HHHH
Confidence 9999999999999999999999999999998876421 137999999999999765 4444 3667
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
..+++..+. ++|+| +||++|.|++++|+++...++
T Consensus 130 ~~~~~~~~~------~~~~~---------~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 130 VSLSQQWGN------VPFYE---------TSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred HHHHHHcCC------ceEEE---------eeCCCCCCHHHHHHHHHHHHh
Confidence 777777663 57888 999999999999999987664
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=201.31 Aligned_cols=169 Identities=31% Similarity=0.509 Sum_probs=142.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|++..+...+.++++.++..+.+.++ +..+.+.+||++|++.+..++.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~~~~~ 67 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVD-------------DKLVTLQIWDTAGQERFQSLGV 67 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEEC-------------CEEEEEEEEeCCChHHHHhHHH
Confidence 589999999999999999999999888888888988888888776 5678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.+|+++..|...+....... ...++|+++|+||+|+... +.+. .++.+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~Dl~~~--~~~~----~~~~~ 133 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPS--------DPENFPFVVLGNKIDLEEK--RQVS----TKKAQ 133 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCcc--------CCCCceEEEEEECcccccc--cccC----HHHHH
Confidence 99999999999999999999999999998876654211 1136899999999999853 3333 26677
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+++..+. +++++ +||++|.|++++++.+.+.+++.
T Consensus 134 ~~~~~~~~------~~~~~---------~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 134 QWCQSNGN------IPYFE---------TSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred HHHHHcCC------ceEEE---------EECCCCCCHHHHHHHHHHHHHhc
Confidence 78877763 46777 99999999999999999887765
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=205.19 Aligned_cols=162 Identities=19% Similarity=0.328 Sum_probs=134.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.++ +..+.+.+|||+|++.|..++.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVG-------------GKQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEEC-------------CEEEEEEEEeCCCccccccccc
Confidence 5999999999999999999999999888888865433 3445554 5678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC----------Cc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG----------TR 170 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~----------r~ 170 (333)
.++..+|++|+|||++++.+|+.+. .|+..+.... .++|++|||||+|+.+... +.
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~-------------~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 133 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-------------PNVPYLLVGTQIDLRDDPKTLARLNDMKEKP 133 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEeEchhhhcChhhHHHHhhccCCC
Confidence 9999999999999999999999985 6888887652 3799999999999865421 24
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++ .+++..+++.++. .+|+| |||++|.|++++|+.+++.+
T Consensus 134 v~----~~~~~~~~~~~~~------~~~~e---------~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 134 VT----VEQGQKLAKEIGA------HCYVE---------CSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CC----HHHHHHHHHHcCC------CEEEE---------ecCCcCCCHHHHHHHHHHHh
Confidence 44 3778899988885 35777 99999999999999888765
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=200.26 Aligned_cols=160 Identities=28% Similarity=0.466 Sum_probs=138.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|++..+...+.++.+.++....+.++ +..+.+.+||++|++.+..+..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-------------GKKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-------------CEEEEEEEEECCCchhhhhhhH
Confidence 599999999999999999999998887788899988887777765 5678899999999999999989
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++|+|||++++.+|+.+..|+..+..+.. ..++|+++||||+|+... .+. .++..
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~~~~iv~nK~D~~~~---~~~----~~~~~ 129 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-----------NNDIVKMLVGNKIDKENR---EVT----REEGL 129 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-----------CCCCcEEEEEECCccccc---ccC----HHHHH
Confidence 999999999999999999999999999999987743 247899999999999832 333 36677
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
++++..+ ++++| +||++|.|++++++.+++.
T Consensus 130 ~~~~~~~-------~~~~~---------~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 130 KFARKHN-------MLFIE---------TSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HHHHHcC-------CEEEE---------EecCCCCCHHHHHHHHHHh
Confidence 8887765 56888 9999999999999888764
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-28 Score=210.47 Aligned_cols=166 Identities=21% Similarity=0.317 Sum_probs=149.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|.+|||||+|+.+|.++.|...|.+|++ +.+.+.+.++ +..+.+.|+||+|+++|..+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~-------------~~~~~l~ilDt~g~~~~~~~ 67 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVD-------------GEVCMLEILDTAGQEEFSAM 67 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEEC-------------CEEEEEEEEcCCCcccChHH
Confidence 458999999999999999999999999999999998 6667888776 68899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...+++.+|++++||+++++.||+.+..++..|.+... ...+|+++||||+|+... |.|+. ++
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~-----------~~~~PivlVGNK~Dl~~~--R~V~~----ee 130 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKG-----------RDDVPIILVGNKCDLERE--RQVSE----EE 130 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----------cCCCCEEEEEEcccchhc--cccCH----HH
Confidence 99999999999999999999999999999999955422 346999999999999987 78885 88
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++.++..++ |+|+| +||+.+.|++++|..+++.+-..
T Consensus 131 g~~la~~~~-------~~f~E---------~Sak~~~~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 131 GKALARSWG-------CAFIE---------TSAKLNYNVDEVFYELVREIRLP 167 (196)
T ss_pred HHHHHHhcC-------CcEEE---------eeccCCcCHHHHHHHHHHHHHhh
Confidence 999988887 67888 99999999999999999987663
|
|
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=203.93 Aligned_cols=162 Identities=18% Similarity=0.265 Sum_probs=131.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-hhhhHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-YKDCRS 101 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-~~~~~~ 101 (333)
||+|+|++|||||||+++|+++.+...+.++.+..+ .+.+.++ +..+.++||||+|+++ +.....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTID-------------GEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEEC-------------CEEEEEEEEECCCCcccccchHH
Confidence 699999999999999999999888777777765444 4445554 5678899999999885 344566
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++|+|||++++.||+.+..|+..+..... ...++|+++||||+|+... +.+.. +++.
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----------~~~~~piilv~nK~Dl~~~--~~v~~----~~~~ 130 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKK----------RDREIPVILVGNKADLLHY--RQVST----EEGE 130 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc----------CCCCCCEEEEEECCchHHh--CccCH----HHHH
Confidence 788999999999999999999999999988877531 0137999999999999754 45553 7788
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc-CHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLI 230 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~-~v~~~~~~l~~~l~ 230 (333)
++++.++ ++|+| +||++|. |++++|+.+++.+.
T Consensus 131 ~~~~~~~-------~~~~e---------~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 131 KLASELG-------CLFFE---------VSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred HHHHHcC-------CEEEE---------eCCCCCchhHHHHHHHHHHHHh
Confidence 8888877 46888 9999995 89999999887653
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=211.35 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=134.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
+||+|+|++|||||||+++|+++.+. ..+.++.+.++..+.+.++ +..+.+.||||+|++. ...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-------------~~~~~l~i~Dt~G~~~--~~~ 65 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD-------------GEESTLVVIDHWEQEM--WTE 65 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC-------------CEEEEEEEEeCCCcch--HHH
Confidence 58999999999999999999988886 6777777767777888775 5678899999999982 334
Q ss_pred Hhhcc-CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 101 SILYS-QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 101 ~~~~~-~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
..++. ++|++|+|||++++.+|+.+..|+.++..... ..++|+|+|+||+|+... +.+.. ++
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-----------~~~~piilV~NK~Dl~~~--~~v~~----~~ 128 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-----------LEDRPIILVGNKSDLARS--REVSV----QE 128 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEEChhcccc--ceecH----HH
Confidence 45566 99999999999999999999999999877632 137999999999999765 55653 66
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+.+++..++ ++|+| |||++|.|++++|+.+++.+...
T Consensus 129 ~~~~a~~~~-------~~~~e---------~SA~~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 129 GRACAVVFD-------CKFIE---------TSAGLQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred HHHHHHHcC-------CeEEE---------ecCCCCCCHHHHHHHHHHHHHhh
Confidence 788887776 46778 99999999999999998877543
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-27 Score=197.57 Aligned_cols=161 Identities=25% Similarity=0.419 Sum_probs=136.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+. +..+.+.+||++|++.+..++.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG-------------GKRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC-------------CEEEEEEEEECCchHHHHHhhH
Confidence 599999999999999999999998877777777777777777664 4567899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||+++.++++.+..|+.++..... .++|+++|+||+|+... +.+.. ++..
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piiiv~nK~D~~~~--~~~~~----~~~~ 129 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG------------NNISLVIVGNKIDLERQ--RVVSK----SEAE 129 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--cCCCH----HHHH
Confidence 999999999999999999999999999999987642 26899999999999854 34442 5666
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++++..+ +++++ +||+++.|++++++.+.+.+
T Consensus 130 ~~~~~~~-------~~~~~---------~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 130 EYAKSVG-------AKHFE---------TSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHh
Confidence 7777666 45777 99999999999999988765
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=204.14 Aligned_cols=164 Identities=20% Similarity=0.307 Sum_probs=128.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|+.|||||||+++|..+.+. .+.+|+|.++. .+.+ ..+.+.|||++|++++..+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~---------------~~~~~~i~D~~Gq~~~~~~ 77 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---------------KNISFTVWDVGGQDKIRPL 77 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE---------------CCEEEEEEECCCCHHHHHH
Confidence 4479999999999999999999988775 46788887653 3333 3578999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||+++++++..+..|+..+..... ..++|++||+||+|+.+.. .
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~-----------~~~~piilv~NK~Dl~~~~-----------~ 135 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPNAM-----------N 135 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHh-----------hCCCCEEEEEECCCCCCCC-----------C
Confidence 99999999999999999999999998888777654311 1368999999999997541 1
Q ss_pred HHHHHHHcCCCCCCc-CCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~-~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+.++.+.+++..... .+.+++ |||++|.|++++|+.|.+.+.++
T Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~---------~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 136 AAEITDKLGLHSLRQRHWYIQS---------TCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHhCccccCCCceEEEe---------ccCCCCCCHHHHHHHHHHHHhhc
Confidence 345566666542111 123446 99999999999999998887654
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=201.27 Aligned_cols=162 Identities=22% Similarity=0.339 Sum_probs=133.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
.||+|+|++|||||||+++|+++.+...+.+|++..+. ..+.++ +..+.+.+|||+|+++|..++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVD-------------GKQVELALWDTAGQEDYDRLRP 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEEC-------------CEEEEEEEEeCCCchhhhhccc
Confidence 59999999999999999999999998888888876653 345554 5678899999999999998888
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC----------Cc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG----------TR 170 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~----------r~ 170 (333)
.++.++|++++|||++++++|+.+. .|+..+.... .++|+++|+||+|+..... +.
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~ 134 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEP 134 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEeeChhcccChhhhhhhhhccCCC
Confidence 8899999999999999999999985 6888887653 3789999999999865321 22
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+. .++++++++..+. .+|+| |||++|.|++++|+.+.+.+
T Consensus 135 v~----~~~~~~~~~~~~~------~~~~~---------~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 135 VK----PEEGRDMANKIGA------FGYME---------CSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred cc----HHHHHHHHHHcCC------cEEEE---------eccccCcCHHHHHHHHHHHh
Confidence 32 3678888887764 35777 99999999999999887654
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-28 Score=209.47 Aligned_cols=168 Identities=22% Similarity=0.340 Sum_probs=144.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+|++|||+.++|||+|+..|..+.|...+.||+...+ ...+.++ +++.+.+.+|||+||++|..+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~------------dg~~v~L~LwDTAGqedYDrl 69 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVD------------DGKPVELGLWDTAGQEDYDRL 69 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEec------------CCCEEEEeeeecCCCcccccc
Confidence 468999999999999999999999999999999987444 4445552 378999999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC----------
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG---------- 168 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~---------- 168 (333)
+...|.++|+||+||++.++.||+++ .+|+.++..++. ++|+||||+|.||.++..
T Consensus 70 RplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp-------------~vpiiLVGtk~DLr~d~~~~~~l~~~~~ 136 (198)
T KOG0393|consen 70 RPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP-------------NVPIILVGTKADLRDDPSTLEKLQRQGL 136 (198)
T ss_pred cccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC-------------CCCEEEEeehHHhhhCHHHHHHHHhccC
Confidence 98999999999999999999999997 689999999974 899999999999985321
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
..|+ .++++.+|++.|+. .|+| |||++..|++++|+..++.++..
T Consensus 137 ~~Vt----~~~g~~lA~~iga~------~y~E---------cSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 137 EPVT----YEQGLELAKEIGAV------KYLE---------CSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred Cccc----HHHHHHHHHHhCcc------eeee---------ehhhhhCCcHHHHHHHHHHHhcc
Confidence 1344 48899999999974 4666 99999999888888887776653
|
|
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=196.85 Aligned_cols=163 Identities=25% Similarity=0.418 Sum_probs=137.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|++|||||||+++|+++.+...+.++++.++..+.+.+. +..+.+.+||++|++.+...
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~~~ 72 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIK-------------GEKIKLQIWDTAGQERFRSI 72 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-------------CEEEEEEEEECCCcHHHHHH
Confidence 45899999999999999999999888877788888888888888775 56688999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..++..+|++|+|||+++..+|+.+..|+.++..... .++|+++|+||+|+... +.+.. +.
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~~~i~v~NK~D~~~~--~~i~~----~~ 134 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN------------NKVITILVGNKIDLAER--REVSQ----QR 134 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--cccCH----HH
Confidence 88999999999999999999999999999998877642 36899999999999764 44442 44
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+.+.+... ++++| |||++|.|++++|+.+.+.+
T Consensus 135 ~~~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 135 AEEFSDAQD-------MYYLE---------TSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHcC-------CeEEE---------eeCCCCCCHHHHHHHHHHHh
Confidence 556655444 45777 99999999999999988764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=196.62 Aligned_cols=157 Identities=21% Similarity=0.314 Sum_probs=119.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||+++|..+.+. .+.+|+|.++. .+.+ ..+.+.+|||+|++++..++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~---------------~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---------------KNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE---------------CCEEEEEEECCCCHhHHHHHH
Confidence 58999999999999999999988886 46788887653 3333 357899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+.+.. . ..
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~~----~-------~~ 120 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDE-----------LRDAVLLVFANKQDLPNAM----S-------AA 120 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHH-----------hcCCCEEEEEECCCCCCCC----C-------HH
Confidence 999999999999999999999999888877754321 1258999999999996431 1 11
Q ss_pred HHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 182 ~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++...+++.... ..+.++| +||++|.|++++|+.|.+
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~---------~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 121 EVTDKLGLHSLRNRNWYIQA---------TCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHhCccccCCCCEEEEE---------eeCCCCCCHHHHHHHHhc
Confidence 222333321111 1234556 999999999999988754
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=198.77 Aligned_cols=172 Identities=19% Similarity=0.303 Sum_probs=132.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|++|||||||+++|+.+.+... .+|.|.++....+... ++..+.+.+|||+|++++..+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~------------~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLG------------NSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeecc------------CCCceEEEEEECCCcHhHHHH
Confidence 358999999999999999999998888654 6777777665555442 145688999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||+++..+++.+..|+.++..... ..++|++||+||+|+... +. .++
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-----------~~~~p~iiv~NK~D~~~~----~~----~~~ 129 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-----------NQGVPVLVLANKQDLPNA----LS----VSE 129 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-----------cCCCcEEEEEECcCcccc----CC----HHH
Confidence 99999999999999999999999999889888876532 136899999999998643 11 133
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
..++........ ...+++++ |||++|.|++++++.+++.+++.+
T Consensus 130 ~~~~~~~~~~~~-~~~~~~~~---------~SA~~~~gi~~l~~~l~~~l~~~~ 173 (183)
T cd04152 130 VEKLLALHELSA-STPWHVQP---------ACAIIGEGLQEGLEKLYEMILKRR 173 (183)
T ss_pred HHHHhCccccCC-CCceEEEE---------eecccCCCHHHHHHHHHHHHHHHH
Confidence 444433212111 01245667 999999999999999999887654
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=199.72 Aligned_cols=165 Identities=19% Similarity=0.288 Sum_probs=135.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
.||+|+|++|||||||+++|..+.+...+.+|++..+. ..+.++ +..+.+.+||++|++.+.....
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~l~i~Dt~g~~~~~~~~~ 67 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVD-------------GKPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEEC-------------CEEEEEEEEECCCChhccccch
Confidence 59999999999999999999988887777777665553 344444 4667899999999999888777
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc--------CCccC
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE--------GTRGS 172 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~--------~r~v~ 172 (333)
.++.++|++|+|||+++.++|+.+. .|+..+.... .++|++|||||+|+.... .+.+.
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~-------------~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~ 134 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC-------------PNVPVILVGLKKDLRQDAVAKEEYRTQRFVP 134 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEeeChhhhhCcccccccccCCcCC
Confidence 7889999999999999999999996 6999987664 369999999999996421 13344
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+++..+++.++. ++||| |||++|.|++++|+.+.+.++..
T Consensus 135 ----~~~~~~~~~~~~~------~~~~e---------~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 135 ----IQQGKRVAKEIGA------KKYME---------CSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred ----HHHHHHHHHHhCC------cEEEE---------ccCCCCCCHHHHHHHHHHHHhcc
Confidence 3778889998885 35777 99999999999999999877654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-26 Score=197.54 Aligned_cols=161 Identities=23% Similarity=0.341 Sum_probs=123.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|++|||||||+++|..+.+. .+.+|++.++.. +.+ ..+.+.+|||+|++++..+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~---------------~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY---------------KNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE---------------CCEEEEEEECCCChhhHHH
Confidence 3589999999999999999999887774 467888876642 332 2578999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++.+++.+..|+..+..... ..++|++|||||+|+.+.. .
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~-----------~~~~piilv~NK~Dl~~~~----~------- 131 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDE-----------LRDAVILVFANKQDLPDAM----K------- 131 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHh-----------hcCCcEEEEEeCcCcccCC----C-------
Confidence 99999999999999999999999999888888754321 1368999999999997531 1
Q ss_pred HHHHHHHcCCCCCCc-CCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~-~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..++...+++..... .+.+++ +||++|.|++++|+.|.+.+
T Consensus 132 ~~~i~~~~~~~~~~~~~~~~~~---------~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 132 AAEITEKLGLHSIRDRNWYIQP---------TCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHHHhCccccCCCcEEEEE---------eeCCCCCCHHHHHHHHHHHh
Confidence 233444444321111 122445 99999999999999887654
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=196.76 Aligned_cols=160 Identities=19% Similarity=0.286 Sum_probs=122.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|++|||||||+++|..+.+. .+.+|+|.++. .+.. ..+.+.+|||+|++++..+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~---------------~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY---------------KNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE---------------CCEEEEEEECCCCHHHHHH
Confidence 4589999999999999999999987775 45678887664 2322 3578999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++.+|+++..|+.++..... ..++|++||+||+|+... +. .++
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~----~~----~~~ 130 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDRE-----------MRDALLLVFANKQDLPDA----MK----PHE 130 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHh-----------hcCCcEEEEEECcCCccC----CC----HHH
Confidence 99999999999999999999999999888877754321 136899999999999642 22 244
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+++++....+.. ..++++| |||++|.|++++|+.|.+
T Consensus 131 i~~~~~~~~~~~--~~~~~~~---------~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 131 IQEKLGLTRIRD--RNWYVQP---------SCATSGDGLYEGLTWLSS 167 (168)
T ss_pred HHHHcCCCccCC--CcEEEEE---------eeCCCCCChHHHHHHHhc
Confidence 554432111110 0135677 999999999999988754
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=198.11 Aligned_cols=164 Identities=23% Similarity=0.332 Sum_probs=126.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||++++..+.+.. +.+|++.++. .+.. ..+.+.+|||+|++++..+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~---------------~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY---------------KNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE---------------CCEEEEEEECCCCHhHHHH
Confidence 35799999999999999999999887764 6678786653 2332 3578999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++.+|+++..|+..+..... ..++|++||+||.|+.+. +.
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~-----------~~~~piilv~NK~Dl~~~----~~------- 135 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDE-----------LRDAVLLVFANKQDLPNA----MS------- 135 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHh-----------hcCCCEEEEEeCCCCCCC----CC-------
Confidence 99999999999999999999999998887777644311 126899999999999643 11
Q ss_pred HHHHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
..+++..+++.... ..++++| +||++|.|++++|+.+.+.+.+.
T Consensus 136 ~~~i~~~l~~~~~~~~~~~~~~---------~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 136 TTEVTEKLGLHSVRQRNWYIQG---------CCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHhCCCcccCCcEEEEe---------eeCCCCCCHHHHHHHHHHHHHHh
Confidence 12344555543111 1134557 99999999999999999887764
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-26 Score=191.33 Aligned_cols=162 Identities=23% Similarity=0.338 Sum_probs=134.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|++|||||||++++++..+...+.++.+..+ .+.+.++ +..+.+.+||++|++++..++.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD-------------GEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEEC-------------CEEEEEEEEECCChhhhhHHHH
Confidence 5999999999999999999999988877777766544 3444444 5678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++.+|++++|||++++.+|+.+..|+..+..... ..++|+++|+||+|+... +.+. .++..
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piiiv~NK~D~~~~--~~~~----~~~~~ 129 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-----------DDNVPLLLVGNKCDLEDK--RQVS----SEEAA 129 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEEccccccc--cccC----HHHHH
Confidence 999999999999999999999999999988887632 137999999999999763 2233 25566
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+++.++ +++++ +||++|.|++++++.+.+.+.
T Consensus 130 ~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 130 NLARQWG-------VPYVE---------TSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHHhC-------CeEEE---------eeCCCCCCHHHHHHHHHHHHH
Confidence 7777766 46788 999999999999999887664
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=200.29 Aligned_cols=166 Identities=23% Similarity=0.357 Sum_probs=140.2
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
......+||+|+|++|||||||+++++.+.+...+.+|++.++....+..+ +..+.+.+|||+|+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~i~i~~~Dt~g~~~ 70 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTN-------------CGPICFNVWDTAGQEK 70 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-------------CeEEEEEEEECCCchh
Confidence 456677999999999999999999999998988899999998877776654 5679999999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+..++..++..++++|+|||+++..+|..+..|+..+.... .++|+++||||+|+.+. .+.
T Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~~i~lv~nK~Dl~~~---~~~--- 131 (215)
T PTZ00132 71 FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-------------ENIPIVLVGNKVDVKDR---QVK--- 131 (215)
T ss_pred hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECccCccc---cCC---
Confidence 99999999999999999999999999999999999998764 37899999999998643 232
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
....++++..+ +.|+| +||++|.|+++.|..+.+.++.
T Consensus 132 --~~~~~~~~~~~-------~~~~e---------~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 132 --ARQITFHRKKN-------LQYYD---------ISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred --HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHhh
Confidence 22345666555 35777 9999999999999988887765
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=187.69 Aligned_cols=158 Identities=29% Similarity=0.516 Sum_probs=136.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+++|.+|||||||+++|++..+...+.+|.+.++....+..+ +..+.+.+||++|++.+..+..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-------------GKTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-------------CEEEEEEEEecCChHHHHHHHH
Confidence 589999999999999999999999988888888988888888765 4678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++++++.+..|+..+..... ...|+++|+||+|+... ..+. .++++
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~--~~~~----~~~~~ 129 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP------------ENIPIILVGNKIDLEDQ--RQVS----TEEAQ 129 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEEccccccc--cccc----HHHHH
Confidence 999999999999999999999999999999988742 36899999999999733 2333 37778
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
+++...+ +++++ +||+++.|++++++.+.
T Consensus 130 ~~~~~~~-------~~~~~---------~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 130 QFAKENG-------LLFFE---------TSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHcC-------CeEEE---------EecCCCCCHHHHHHHHh
Confidence 8887754 56888 99999999999888775
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-26 Score=194.02 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=125.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|++|||||||+++|++..+. .+.+|++.++. .+.+ ..+.+.+|||+|++++..++..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~---------------~~~~i~l~Dt~G~~~~~~~~~~ 62 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY---------------KNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE---------------CCEEEEEEECCCChhcchHHHH
Confidence 6899999999999999999998775 47778776663 3333 3578999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
+++.+|++|+|||++++.+|+++..|+..+..... ..+.|++||+||+|+... ++ .+++++
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~----~~----~~~~~~ 123 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-----------LRDALLLIFANKQDVAGA----LS----VEEMTE 123 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-----------hCCCCEEEEEeCcCcccC----CC----HHHHHH
Confidence 99999999999999999999999999998875421 125899999999999642 33 255666
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+++..++. ....+.++| |||++|.|++++|+.+.+.+..
T Consensus 124 ~~~~~~~~-~~~~~~~~~---------~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 124 LLSLHKLC-CGRSWYIQG---------CDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred HhCCcccc-CCCcEEEEe---------CcCCCCCCHHHHHHHHHHHHhh
Confidence 65332211 000124666 9999999999999998876554
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-26 Score=193.12 Aligned_cols=164 Identities=19% Similarity=0.253 Sum_probs=124.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|.++.+...+..+. .++ .....+. +..+.+.+|||+|.+.+...+.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVT-------------PERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-Eeeeeec-------------CCeEEEEEEeCCCchhhhHHHh
Confidence 489999999999999999999998876544432 222 2222332 4678899999999998888877
Q ss_pred hhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
.++..+|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+.. ... .+.+..
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~pviiv~nK~Dl~~~~--~~~--~~~~~~ 128 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-------------VKVPIILVGNKSDLRDGS--SQA--GLEEEM 128 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEchhccccc--chh--HHHHHH
Confidence 8889999999999999999999985 6888887764 268999999999997652 111 012334
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..+++.+... .+++| |||++|.|++++|+.+.+.+++
T Consensus 129 ~~~~~~~~~~-----~~~~e---------~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 129 LPIMNEFREI-----ETCVE---------CSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHhcc-----cEEEE---------eccccccCHHHHHHHHHHHhcC
Confidence 4444444321 25777 9999999999999998887654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-27 Score=198.50 Aligned_cols=169 Identities=19% Similarity=0.287 Sum_probs=152.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
-...||++|+|..+|||||++++||.+-|...+..|+|+++..+.+.+. +..+.+.+|||+|+++|.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~-------------~Edvr~mlWdtagqeEfD 83 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVL-------------IEDVRSMLWDTAGQEEFD 83 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhh-------------HHHHHHHHHHhccchhHH
Confidence 3456899999999999999999999999999999999999999988876 677889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...||++|.+.++||+.+|+.||+.+..|+.++...+. ++|.++|-||+||.++ ..+..
T Consensus 84 aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-------------~IPtV~vqNKIDlved--s~~~~---- 144 (246)
T KOG4252|consen 84 AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-------------RIPTVFVQNKIDLVED--SQMDK---- 144 (246)
T ss_pred HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc-------------cCCeEEeeccchhhHh--hhcch----
Confidence 9999999999999999999999999999999999988864 8999999999999987 45664
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++.+++++.+ -++- +|+|+..|+..+|..|++.+.+...
T Consensus 145 ~evE~lak~l~~-------RlyR---------tSvked~NV~~vF~YLaeK~~q~~k 185 (246)
T KOG4252|consen 145 GEVEGLAKKLHK-------RLYR---------TSVKEDFNVMHVFAYLAEKLTQQKK 185 (246)
T ss_pred HHHHHHHHHhhh-------hhhh---------hhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 778888888874 3555 9999999999999999998887654
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=196.90 Aligned_cols=154 Identities=21% Similarity=0.271 Sum_probs=117.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
.|+|+|++|||||||+++|+++.+...+.+|+|.+. . .++ ...+.+.+||++|+++|..++..
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~--~i~-------------~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--V--AIP-------------TQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--E--EEe-------------eCCeEEEEEECCCCcchhHHHHH
Confidence 389999999999999999999988888888988653 2 222 34688999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH--HHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV--DAA 180 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~--~~~ 180 (333)
+++++|++|+|||+++..+|..+..|+.++.... .++|+++|+||+|+... +.+.. +. ..+
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-------------~~~piilv~NK~Dl~~~--~~~~~--i~~~~~~ 126 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-------------PDLPLVVLANKQDLPAA--RSVQE--IHKELEL 126 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-------------CCCcEEEEEeCcCCcCC--CCHHH--HHHHhCC
Confidence 9999999999999999999999999998886542 37999999999999754 22210 00 012
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeecc------CcCHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKE------ARYDKEAVMKFF 226 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~------g~~v~~~~~~l~ 226 (333)
.+++++.+ ++|+| |||++ ++||+++|+.++
T Consensus 127 ~~~~~~~~-------~~~~~---------~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 127 EPIARGRR-------WILQG---------TSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred hhhcCCCc-------eEEEE---------eeecCCCChhHHHHHHHHHHHHh
Confidence 23333222 45666 66666 877777777664
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=195.39 Aligned_cols=163 Identities=22% Similarity=0.286 Sum_probs=129.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|++|||||||+++|+++.+...+.+|++ ++..+.+.+. +..+.++|||++|++.|..++..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~-------------~~~~~l~i~D~~G~~~~~~~~~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVG-------------GVSLTLDILDTSGSYSFPAMRKL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEEC-------------CEEEEEEEEECCCchhhhHHHHH
Confidence 699999999999999999999998877777765 3445556554 45688999999999999999889
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+.... +.+.. +.+.+
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~NK~Dl~~~~-~~v~~----~~~~~ 130 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-----------DKFVPIVVVGNKADSLEEE-RQVPA----KDALS 130 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEEcccccccc-ccccH----HHHHH
Confidence 99999999999999999999999999998877642 1369999999999997531 33332 33333
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
...... .++|++ +||++|.|++++|+.+.+.+.
T Consensus 131 ~~~~~~------~~~~~~---------~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 131 TVELDW------NCGFVE---------TSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHhhc------CCcEEE---------ecCCCCCCHHHHHHHHHHHhh
Confidence 322111 146777 999999999999999987654
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=186.38 Aligned_cols=159 Identities=24% Similarity=0.397 Sum_probs=133.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|++|||||||+++|++..+...+.++.+ +...+.+.++ +..+.+++||++|++.+..++..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~~~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVD-------------GETYTLDILDTAGQEEFSAMRDL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEEC-------------CEEEEEEEEECCChHHHHHHHHH
Confidence 699999999999999999998888888888776 4455555554 45788999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++|+|||+++.+++.++..|...+..... ....|+++|+||+|+... +.++ .+.+.+
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~--~~~~----~~~~~~ 129 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-----------DEDIPIVLVGNKCDLENE--RQVS----KEEGKA 129 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEECCccccc--ceec----HHHHHH
Confidence 99999999999999999999999999888877632 136899999999999864 3444 377888
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+++.++ +++++ +||+++.|++++++.+.+.
T Consensus 130 ~~~~~~-------~~~~~---------~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 130 LAKEWG-------CPFIE---------TSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHcC-------CcEEE---------eccCCCCCHHHHHHHHHhh
Confidence 888776 46777 9999999999999888764
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=189.63 Aligned_cols=160 Identities=23% Similarity=0.363 Sum_probs=129.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|++..+...+.++....+ ...+..+ +..+.+.+||++|++++.....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVD-------------GKQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEEC-------------CEEEEEEEEeCCCcccccccch
Confidence 5999999999999999999999988777777765433 3344443 5678899999999999888888
Q ss_pred hhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC---------cc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT---------RG 171 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r---------~v 171 (333)
.+++.+|++++|||++++.+|..+ ..|+..+.... .++|+++||||+|+...... .+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v 133 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-------------PNVPIILVGTKIDLRDDENTLKKLEKGKEPI 133 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-------------CCCCEEEEEccHHhhhchhhhhhcccCCCcc
Confidence 888999999999999999999886 46888887663 27999999999999865422 12
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
. .+++.+++..+++. +|+| +||++|.|++++++.+++
T Consensus 134 ~----~~~~~~~~~~~~~~------~~~~---------~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 134 T----PEEGEKLAKEIGAI------GYME---------CSALTQEGVKEVFEEAIR 170 (171)
T ss_pred C----HHHHHHHHHHhCCe------EEEE---------eecCCCCCHHHHHHHHhh
Confidence 2 36778888887742 5777 999999999999888764
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=188.54 Aligned_cols=159 Identities=22% Similarity=0.266 Sum_probs=119.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+|+|+|++|||||||+++|++.. +...+.+|+|.++. .+.. ..+.+.+|||+|++++..++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~---------------~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK---------------GNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE---------------CCEEEEEEECCCCHhhHHHHH
Confidence 58999999999999999999875 45567788876543 2222 357899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||++++.+|..+..|+..+.....+. ..++|+++|+||+|+.... . ..
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~p~iiv~NK~Dl~~~~----~-------~~ 123 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIK---------HRRVPILFFANKMDLPDAL----T-------AV 123 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccc---------cCCCCEEEEEeCccccCCC----C-------HH
Confidence 99999999999999999999999988988876542110 1369999999999997541 1 11
Q ss_pred HHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 182 QWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 182 ~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++...+++... ...+++++ |||++|.|++++|+.|.+
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~---------~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 124 KITQLLGLENIKDKPWHIFA---------SNALTGEGLDEGVQWLQA 161 (162)
T ss_pred HHHHHhCCccccCceEEEEE---------eeCCCCCchHHHHHHHhc
Confidence 22222232110 01134677 999999999999988754
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-25 Score=189.13 Aligned_cols=164 Identities=25% Similarity=0.340 Sum_probs=134.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
.||+|+|++|||||||+++|++..+...+.+|.+..+ ...+.++ +..+.+.+|||+|++++..++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYK-------------GQDYHLEIVDTAGQDEYSILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEEC-------------CEEEEEEEEECCChHhhHHHHH
Confidence 5999999999999999999999988877777776554 3445554 4567899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||+++..+|+.+..|+..+.+... ..+.|+|+|+||+|+... +.+. .++..
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~ilv~NK~Dl~~~--~~~~----~~~~~ 130 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-----------KESVPIVLVGNKSDLHTQ--RQVS----TEEGK 130 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEEchhhhhc--CccC----HHHHH
Confidence 999999999999999999999999999888877531 136899999999999754 3343 24566
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+++.++ +++++ +||+++.|++++++++.+.+.+.
T Consensus 131 ~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 131 ELAESWG-------AAFLE---------SSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred HHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 6776665 46777 99999999999999999877654
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=189.29 Aligned_cols=161 Identities=17% Similarity=0.304 Sum_probs=122.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+++|++|||||||+++|++..+ ..+.+|+|.. ...+.++ .+.+.+|||+|++.+..
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~---------------~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYE---------------GYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEEC---------------CEEEEEEECCCCHHHHH
Confidence 4457999999999999999999998754 4566777743 3444442 47799999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|..+..|+..+..... ..++|++||+||+|+.... . .+
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~iiv~nK~Dl~~~~----~----~~ 134 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEER-----------LAGATLLILANKQDLPGAL----S----EE 134 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-----------hcCCCEEEEEECcccccCC----C----HH
Confidence 999999999999999999999999999888888754321 1378999999999997531 1 24
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++.++.+..++. ...++++| |||++|.|++++|+.+..
T Consensus 135 ~~~~~~~~~~~~--~~~~~~~~---------~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 135 EIREALELDKIS--SHHWRIQP---------CSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred HHHHHhCccccC--CCceEEEe---------ccCCCCcCHHHHHHHHhc
Confidence 444444322111 11357888 999999999998887753
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-25 Score=186.23 Aligned_cols=157 Identities=21% Similarity=0.310 Sum_probs=118.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
+|+|+|++|||||||+++|+++.+.. ..+|++.++ ..+.. +..+.+.+||++|++++..++..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~--------------~~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL--------------EKHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe--------------CCceEEEEEECCCCHhHHHHHHH
Confidence 58999999999999999999988764 456767554 33333 23578999999999999999988
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++|+|||+++..++..+..|+.++..... ..++|++||+||+|+.... . ..+
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~----~-------~~~ 121 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKNEH-----------IKGVPVVLLANKQDLPGAL----T-------AEE 121 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh-----------hcCCCEEEEEECcccccCc----C-------HHH
Confidence 99999999999999999999999888888765421 1368999999999996431 1 122
Q ss_pred HHHHcCCCCCC--cCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 183 WVEKQGLLPSS--EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 183 ~~~~~~~~~~~--~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+...+++..+. ..+++++ |||++|.|++++++.+.+
T Consensus 122 i~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 122 ITRRFKLKKYCSDRDWYVQP---------CSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHcCCcccCCCCcEEEEe---------cccccCCChHHHHHHHhc
Confidence 33333322111 1245677 999999999999888753
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=185.95 Aligned_cols=156 Identities=20% Similarity=0.243 Sum_probs=120.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
+|+++|++|||||||+++|++. +...+.+|+|.. ...+.+ ..+.+++||++|+++++.++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~---------------~~~~~~i~D~~G~~~~~~~~~~ 62 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL---------------DKYEVCIFDLGGGANFRGIWVN 62 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE---------------CCEEEEEEECCCcHHHHHHHHH
Confidence 4899999999999999999976 777788888865 334443 2578999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
+++.+|++|+|||+++..+|+.+..|+..+..... ..++|++||+||+|+.... . ..+
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-----------~~~~piliv~NK~Dl~~~~--~---------~~~ 120 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-----------VSGKPILVLANKQDKKNAL--L---------GAD 120 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-----------ccCCcEEEEEeCCCCcCCC--C---------HHH
Confidence 99999999999999999999999999998876532 1368999999999997642 1 111
Q ss_pred HHHHcCCCCCC----cCCCccccCCCCCceeeeeccC------cCHHHHHHHHHH
Q 019959 183 WVEKQGLLPSS----EELPLTESFPGGGGLIAAAKEA------RYDKEAVMKFFR 227 (333)
Q Consensus 183 ~~~~~~~~~~~----~~~p~~E~~~~~~~~~~SAk~g------~~v~~~~~~l~~ 227 (333)
+.+.+++.... ..+++++ |||++| .|++++|++|.+
T Consensus 121 i~~~~~l~~~~~~~~~~~~~~~---------~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 121 VIEYLSLEKLVNENKSLCHIEP---------CSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHhcCcccccCCCCceEEEEE---------eEceeCCCCccccCHHHHHHHHhc
Confidence 22222221111 1245666 999998 789999999864
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=186.38 Aligned_cols=158 Identities=22% Similarity=0.314 Sum_probs=120.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+++|++|||||||+++|+.+.+.. +.+|++.++. .+.+ ..+.+.+||++|++++...+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~---------------~~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY---------------KNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE---------------CCeEEEEEECCCCHHHHHHH
Confidence 4799999999999999999999888765 5677776653 2333 25779999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++++|++|+|||++++++|..+..|+.++..... ..++|++||+||+|+... +. .
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-----------~~~~p~viv~NK~Dl~~~----~~-------~ 134 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-----------LRKAVLLVLANKQDLKGA----MT-------P 134 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-----------hcCCCEEEEEECCCCCCC----CC-------H
Confidence 9999999999999999999999988888877755421 136899999999998653 11 1
Q ss_pred HHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 181 ~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.++.+.+++... ..++++++ |||++|.|++++++.|.+
T Consensus 135 ~~i~~~l~~~~~~~~~~~~~~---------~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 135 AEISESLGLTSIRDHTWHIQG---------CCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHhCcccccCCceEEEe---------cccCCCCCHHHHHHHHhc
Confidence 223333332111 01256777 999999999999888753
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=180.97 Aligned_cols=156 Identities=21% Similarity=0.321 Sum_probs=115.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|++|||||||+++|..+.+. .+.+|++.++. .+.+ ..+.+.+|||+|++++..++..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~---------------~~~~~~i~Dt~G~~~~~~~~~~ 62 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY---------------KNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE---------------CCEEEEEEECCCCHHHHHHHHH
Confidence 6899999999999999999887765 35667776543 3332 3577999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++|+|||++++.++.....|+..+.+... ..++|+++|+||+|+.... . ..+
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piiiv~nK~Dl~~~~----~-------~~~ 120 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEE-----------LKGAVLLVFANKQDMPGAL----S-------EAE 120 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-----------hcCCcEEEEEeCCCCCCCC----C-------HHH
Confidence 99999999999999999888877666665533211 1368999999999997531 1 122
Q ss_pred HHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 183 WVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 183 ~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++..++.... ...++++| |||++|.|++++++.+++
T Consensus 121 i~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 121 ISEKLGLSELKDRTWSIFK---------TSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHhCccccCCCcEEEEE---------eeccCCCCHHHHHHHHhc
Confidence 3333332111 11245777 999999999999998864
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-24 Score=179.69 Aligned_cols=156 Identities=24% Similarity=0.370 Sum_probs=119.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|+|.+|||||||++++++..+ ..+.+|++..+. .+.+. .+.+.+||++|++.+...+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~---------------~~~~~i~D~~G~~~~~~~~~~ 62 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK---------------NVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC---------------CEEEEEEECCCChhhHHHHHH
Confidence 699999999999999999998874 456667665543 34332 467999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++++|||+++++++..+..|+..+..... ..+.|+++|+||+|+.... . .++..
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piiiv~nK~D~~~~~----~----~~~~~- 122 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-----------LKGVPLLIFANKQDLPGAL----S----VSELI- 122 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-----------cCCCcEEEEeeccCCcccc----C----HHHHH-
Confidence 99999999999999999999999888888766532 1378999999999997642 1 12222
Q ss_pred HHHHcCCC-CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 183 WVEKQGLL-PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 183 ~~~~~~~~-~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+..+.. .....+++++ +||++|.|++++|+.|..
T Consensus 123 --~~~~~~~~~~~~~~~~~---------~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 123 --EKLGLEKILGRRWHIQP---------CSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred --HhhChhhccCCcEEEEE---------eeCCCCCCHHHHHHHHhh
Confidence 222221 0111367888 999999999998888754
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=180.62 Aligned_cols=160 Identities=20% Similarity=0.312 Sum_probs=118.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC------CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS------FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
+|+|+|++|||||||+++|++... ...+.+|++.++. .+.++ .+.+.+|||+|++.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~---------------~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG---------------NARLKFWDLGGQESL 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC---------------CEEEEEEECCCChhh
Confidence 589999999999999999985422 2344566666553 33332 477999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..++..+|++|+|||+++.+++..+..|+..+..... ..++|++||+||+|+... +.
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~ilv~NK~D~~~~----~~---- 124 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEA-----------LEGVPLLILANKQDLPDA----LS---- 124 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-----------hcCCCEEEEEEccccccC----CC----
Confidence 99999999999999999999999999998888888766421 136899999999998653 11
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.++...+.+..........+++++ +||++|.|++++++.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 125 VEEIKEVFQDKAEEIGRRDCLVLP---------VSALEGTGVREGIEWLVE 166 (167)
T ss_pred HHHHHHHhccccccccCCceEEEE---------eeCCCCcCHHHHHHHHhc
Confidence 133444433321101111356777 999999999999888754
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=183.08 Aligned_cols=164 Identities=18% Similarity=0.281 Sum_probs=124.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+. .+.+|.+... ..+.++ .+.+.+||++|++++..
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~---------------~~~~~l~D~~G~~~~~~ 78 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG---------------NIKFKTFDLGGHEQARR 78 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC---------------CEEEEEEECCCCHHHHH
Confidence 45689999999999999999999988763 5666666543 344443 36789999999999998
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++.++|++|+|+|+++..+|.....|+.++..... ..+.|++||+||+|+.. .+. .+
T Consensus 79 ~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~-----------~~~~pvivv~NK~Dl~~----~~~----~~ 139 (190)
T cd00879 79 LWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEE-----------LANVPFLILGNKIDLPG----AVS----EE 139 (190)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCcc-----------ccCCCEEEEEeCCCCCC----CcC----HH
Confidence 888899999999999999999999988888888865432 13689999999999964 233 24
Q ss_pred HHHHHHHHcCCCC---------CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLP---------SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 179 ~~~~~~~~~~~~~---------~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.+++........ ....+++++ |||++|.|++++|+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 140 ELRQALGLYGTTTGKGVSLKVSGIRPIEVFM---------CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred HHHHHhCcccccccccccccccCceeEEEEE---------eEecCCCChHHHHHHHHhh
Confidence 4555544322110 001235667 9999999999999998764
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=180.80 Aligned_cols=161 Identities=16% Similarity=0.264 Sum_probs=120.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+++|.+|||||||+++|.++.+. .+.+|.+.+. ..+.+ ..+.+.+||++|++.+..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~---------------~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAI---------------GNIKFTTFDLGGHQQARR 76 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEE---------------CCEEEEEEECCCCHHHHH
Confidence 44589999999999999999999988764 3455555433 23333 247799999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|+|++++.++.....|+.++..... ..++|+++|+||+|+... ++. +
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~-----------~~~~piliv~NK~Dl~~~----~~~----~ 137 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEE-----------LATVPFLILGNKIDAPYA----ASE----D 137 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChh-----------hcCCCEEEEEeCccccCC----CCH----H
Confidence 999999999999999999999999998888888765421 136899999999998642 232 2
Q ss_pred HHHHHHHHcCCCCCC--------cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSS--------EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~--------~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
++.+.+++.... ....+++ |||++|.|++++++.|...
T Consensus 138 ---~i~~~l~l~~~~~~~~~~~~~~~~i~~---------~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 138 ---ELRYALGLTNTTGSKGKVGVRPLEVFM---------CSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ---HHHHHcCCCcccccccccCCceeEEEE---------eecccCCChHHHHHHHHhh
Confidence 334445442211 1122455 9999999999999998754
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=173.22 Aligned_cols=157 Identities=21% Similarity=0.358 Sum_probs=121.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
.|+|+|++|||||||+++|++..+...+.+|.+.++.. +..+ .+.+.+||++|++.+..++..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~---------------~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG---------------NVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC---------------CEEEEEEECCCCHhHHHHHHH
Confidence 38999999999999999999999998888988876643 3332 378999999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++++|+|+++..++..+..|+..+..... ..++|+++|+||+|+.... . ..+
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~iiv~nK~D~~~~~--~---------~~~ 121 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-----------LEGIPLLVLGNKNDLPGAL--S---------VDE 121 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-----------hcCCCEEEEEeCccccCCc--C---------HHH
Confidence 99999999999999999999888888877755321 1368999999999987541 1 122
Q ss_pred HHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 183 WVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 183 ~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+....++... ...+++++ +||++|.|++++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 122 LIEQMNLKSITDREVSCYS---------ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHhCcccccCCceEEEE---------EEeccCCChHHHHHHHhh
Confidence 2333332211 11245667 999999999999988864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-23 Score=176.58 Aligned_cols=141 Identities=21% Similarity=0.267 Sum_probs=120.9
Q ss_pred CCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHH
Q 019959 44 GSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKT 123 (333)
Q Consensus 44 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~ 123 (333)
+.|...+.+|+|.++..+.+.++ +..+.+.||||+|++++..++..+++++|++|+|||++++.+|+
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~-------------~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~ 69 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLD-------------EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 69 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEEC-------------CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHH
Confidence 46778899999999988888776 56899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCC
Q 019959 124 SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFP 203 (333)
Q Consensus 124 ~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~ 203 (333)
.+..|+..+..... .++|++|||||+||... +.+.. +++..+++.++ +.|+|
T Consensus 70 ~~~~w~~~i~~~~~------------~~~piilVgNK~DL~~~--~~v~~----~e~~~~~~~~~-------~~~~e--- 121 (176)
T PTZ00099 70 NTTKWIQDILNERG------------KDVIIALVGNKTDLGDL--RKVTY----EEGMQKAQEYN-------TMFHE--- 121 (176)
T ss_pred HHHHHHHHHHHhcC------------CCCeEEEEEECcccccc--cCCCH----HHHHHHHHHcC-------CEEEE---
Confidence 99999999876531 36899999999999754 45553 67888888776 35777
Q ss_pred CCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 204 GGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 204 ~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
|||++|.|++++|+.+.+.+..
T Consensus 122 ------~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 122 ------TSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ------EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998877644
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=174.73 Aligned_cols=161 Identities=15% Similarity=0.218 Sum_probs=115.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-------CCCCCCc------ccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEe
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS-------SFSRPSQ------TIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWD 89 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~-------~~~~~~~------t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~D 89 (333)
+|+++|+++||||||+++|++.. +...+.+ +.|.++..+.+.+.- ...++..+.+.|||
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~--------~~~~~~~~~~~l~D 73 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNY--------KAKDGQEYLLNLID 73 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEE--------ecCCCCcEEEEEEE
Confidence 68999999999999999999642 2122222 224455444333210 00125678899999
Q ss_pred CCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 90 ISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 90 t~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
|+|+++|..+...+++.+|++|+|||+++..+++.+..|.... .. ++|+++|+||+|+....
T Consensus 74 t~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~~---------------~~~iiiv~NK~Dl~~~~-- 135 (179)
T cd01890 74 TPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-EN---------------NLEIIPVINKIDLPSAD-- 135 (179)
T ss_pred CCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-Hc---------------CCCEEEEEECCCCCcCC--
Confidence 9999999999999999999999999999988887777665433 22 57999999999986431
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
. .+...++++.+++.. .++++ +||++|.|++++++.+.+.
T Consensus 136 ~------~~~~~~~~~~~~~~~----~~~~~---------~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 136 P------ERVKQQIEDVLGLDP----SEAIL---------VSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred H------HHHHHHHHHHhCCCc----ccEEE---------eeccCCCCHHHHHHHHHhh
Confidence 0 133456667666421 23666 9999999999988888764
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=171.89 Aligned_cols=160 Identities=20% Similarity=0.309 Sum_probs=120.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...++|+|+|++|||||||++++.+..+. .+.+|.|.++ ..+.+. ...+.+||++|+..+..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~---------------~~~~~~~D~~G~~~~~~ 73 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSD---------------GFKLNVWDIGGQRAIRP 73 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEEC---------------CEEEEEEECCCCHHHHH
Confidence 34689999999999999999999987653 3556666543 333332 36689999999999988
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
.+..+++.+|++++|+|+++..++.....|+..+..... ..++|+++++||+|+... .
T Consensus 74 ~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~-----------~ 131 (173)
T cd04155 74 YWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-----------LAGVPVLVFANKQDLATA-----------A 131 (173)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-----------hcCCCEEEEEECCCCccC-----------C
Confidence 888889999999999999999999888877777654421 136899999999998753 1
Q ss_pred HHHHHHHHcCCCCCCcC-CCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEE-LPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~-~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
...++.+.+++....+. .++++ +||++|.|++++++++.+
T Consensus 132 ~~~~i~~~l~~~~~~~~~~~~~~---------~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 132 PAEEIAEALNLHDLRDRTWHIQA---------CSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHcCCcccCCCeEEEEE---------eECCCCCCHHHHHHHHhc
Confidence 23445555665432221 23456 999999999999988864
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=173.79 Aligned_cols=162 Identities=22% Similarity=0.396 Sum_probs=125.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+++|..|||||||++++..+.+. ...||.|.+. ..+.+. .+.+.+||++|+..++.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~--~~i~~~---------------~~~~~~~d~gG~~~~~~ 73 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI--EEIKYK---------------GYSLTIWDLGGQESFRP 73 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE--EEEEET---------------TEEEEEEEESSSGGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc--ceeeeC---------------cEEEEEEeccccccccc
Confidence 56789999999999999999999977553 4677777554 445543 57799999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
.+..|+..+|++|+|+|.++.+.+.+....+.++..... ..++|++|++||.|+.+.. . .+
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~-----------~~~~piLIl~NK~D~~~~~----~----~~ 134 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPE-----------LKDIPILILANKQDLPDAM----S----EE 134 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGG-----------GTTSEEEEEEESTTSTTSS----T----HH
T ss_pred cceeeccccceeEEEEecccceeecccccchhhhcchhh-----------cccceEEEEeccccccCcc----h----hh
Confidence 999999999999999999999999998888888766532 2379999999999987541 1 13
Q ss_pred HHHHHHHHcCCCCCC--cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSS--EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~--~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.. ..+++.... ..+.++. |||++|.|+.+++++|.+.+
T Consensus 135 ~i~---~~l~l~~l~~~~~~~v~~---------~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 135 EIK---EYLGLEKLKNKRPWSVFS---------CSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp HHH---HHTTGGGTTSSSCEEEEE---------EBTTTTBTHHHHHHHHHHHH
T ss_pred HHH---hhhhhhhcccCCceEEEe---------eeccCCcCHHHHHHHHHhcC
Confidence 233 333322211 1244566 99999999999999998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=174.22 Aligned_cols=170 Identities=26% Similarity=0.405 Sum_probs=132.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|+.|||||||+++|.++.+...+.+|++..+........ +..+++.+|||+|+++|+.++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~Dt~gq~~~~~~~ 71 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY-------------RRNIKLQLWDTAGQEEYRSLR 71 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeC-------------CCEEEEEeecCCCHHHHHHHH
Confidence 3899999999999999999999999999999998887776666553 347889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC----------
Q 019959 101 SILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT---------- 169 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r---------- 169 (333)
..++.+++++++|||.++.. +++....|..++..... ...|+++|+||+|+......
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~------------~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP------------DDVPILLVGNKIDLFDEQSSSEEILNQLNR 139 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC------------CCceEEEEecccccccchhHHHHHHhhhhc
Confidence 99999999999999999954 55666899999988752 36899999999999876311
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeec--cCcCHHHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK--EARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk--~g~~v~~~~~~l~~~l~~~ 232 (333)
.+. .......+...... ...+++ +||+ ++.++++++..+++.+...
T Consensus 140 ~~~----~~~~~~~~~~~~~~----~~~~~~---------~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 140 EVV----LLVLAPKAVLPEVA----NPALLE---------TSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred Ccc----hhhhHhHHhhhhhc----ccceeE---------eecccCCCcCHHHHHHHHHHHHHHh
Confidence 111 11122222211100 012555 9999 9999999999999988764
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-22 Score=168.00 Aligned_cols=154 Identities=19% Similarity=0.149 Sum_probs=104.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER------- 95 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~------- 95 (333)
+|+|+|++|||||||+++|++..+.....+....+.....+.+ ..+.+.||||+|+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~~~~~~~ 66 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY---------------KYLRWQVIDTPGLLDRPLEERN 66 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc---------------CceEEEEEECCCcCCccccCCc
Confidence 7999999999999999999988764322211111222222221 346799999999732
Q ss_pred ---hhhhHHhhccCCcEEEEEEECCCcccH--HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 96 ---YKDCRSILYSQINGVIFVHDLSQRRTK--TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 96 ---~~~~~~~~~~~ad~vIlV~D~s~~~S~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+..+. .....+|++|+|+|+++..++ +....|+..+.... .+.|+++|+||+|+... +.
T Consensus 67 ~~~~~~~~-~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-------------~~~pvilv~NK~Dl~~~--~~ 130 (168)
T cd01897 67 TIEMQAIT-ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-------------KNKPVIVVLNKIDLLTF--ED 130 (168)
T ss_pred hHHHHHHH-HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-------------CcCCeEEEEEccccCch--hh
Confidence 11111 112236899999999988754 66667888886653 26899999999999754 22
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+ ....++++.. ..++++ |||++|.|++++++.+.+.+
T Consensus 131 ~------~~~~~~~~~~-------~~~~~~---------~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 131 L------SEIEEEEELE-------GEEVLK---------ISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred H------HHHHHhhhhc-------cCceEE---------EEecccCCHHHHHHHHHHHh
Confidence 1 2233333322 256777 99999999999999988765
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-22 Score=167.12 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=102.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC---CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG---SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
.|+|+|++|||||||+++|++. .+.....++.+.+.....+.+. ....+.+|||+|+++|...
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~~~DtpG~~~~~~~ 67 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP--------------SGKRLGFIDVPGHEKFIKN 67 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec--------------CCcEEEEEECCChHHHHHH
Confidence 6899999999999999999963 3333333333444444444442 1357999999999999877
Q ss_pred HHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 100 RSILYSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
...++..+|++|+|+|+++. .+++.+ ..+.... ..|+++|+||+|+.........
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~~~--------------~~~~ilv~NK~Dl~~~~~~~~~---- 125 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHL----EILELLG--------------IKRGLVVLTKADLVDEDWLELV---- 125 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHHhC--------------CCcEEEEEECccccCHHHHHHH----
Confidence 77778899999999999873 333332 2222221 2489999999999754211111
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
.++..++.+..+.. ..++++ +||++|.|++++++.+.
T Consensus 126 ~~~~~~~~~~~~~~----~~~~~~---------~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 126 EEEIRELLAGTFLA----DAPIFP---------VSAVTGEGIEELKEYLD 162 (164)
T ss_pred HHHHHHHHHhcCcC----CCcEEE---------EeCCCCcCHHHHHHHHh
Confidence 13333333332211 256777 99999999999887764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=172.86 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=109.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch----
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE---- 94 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e---- 94 (333)
.+.++|+|+|++|||||||++++++..+.....+..+.+.....+.++ ....+.+|||+|..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 104 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP--------------DGREVLLTDTVGFIRDLP 104 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec--------------CCceEEEeCCCccccCCC
Confidence 445799999999999999999999886543332222333334444443 12368999999962
Q ss_pred -----hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 95 -----RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 95 -----~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
.+.... ..+..+|++++|+|++++.++..+..|...+..... .++|+++|+||+|+....
T Consensus 105 ~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~------------~~~~viiV~NK~Dl~~~~-- 169 (204)
T cd01878 105 HQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA------------EDIPMILVLNKIDLLDDE-- 169 (204)
T ss_pred HHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc------------CCCCEEEEEEccccCChH--
Confidence 222222 236689999999999999999888888877766532 368999999999997642
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
....++... ..++++ +||++|.|++++++.+.+.
T Consensus 170 ---------~~~~~~~~~-------~~~~~~---------~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 170 ---------ELEERLEAG-------RPDAVF---------ISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred ---------HHHHHhhcC-------CCceEE---------EEcCCCCCHHHHHHHHHhh
Confidence 111222211 246777 9999999999999888764
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=164.74 Aligned_cols=135 Identities=17% Similarity=0.223 Sum_probs=99.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-----hhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH-----ERYK 97 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~-----e~~~ 97 (333)
||+|+|++|||||||+++|++..+ .+.+|++.++ . -.+|||+|+ +.+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~-------~------------------~~~iDt~G~~~~~~~~~~ 54 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY-------N------------------DGAIDTPGEYVENRRLYS 54 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE-------c------------------CeeecCchhhhhhHHHHH
Confidence 899999999999999999998765 2334433322 1 268999997 3355
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+.. .++++|++|+|||++++.++.. ..|...+ ..|+++|+||+|+.+. .+. .
T Consensus 55 ~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------------------~~p~ilv~NK~Dl~~~---~~~----~ 107 (142)
T TIGR02528 55 ALIV-TAADADVIALVQSATDPESRFP-PGFASIF------------------VKPVIGLVTKIDLAEA---DVD----I 107 (142)
T ss_pred HHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------------------cCCeEEEEEeeccCCc---ccC----H
Confidence 5544 4889999999999999998765 2444321 2489999999999642 222 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
++++++++..+. .++++ +||++|.|++++|+.+.
T Consensus 108 ~~~~~~~~~~~~------~~~~~---------~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 108 ERAKELLETAGA------EPIFE---------ISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHHcCC------CcEEE---------EecCCCCCHHHHHHHHh
Confidence 667778877764 25777 99999999998887763
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=166.82 Aligned_cols=160 Identities=17% Similarity=0.113 Sum_probs=107.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch----hhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE----RYKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e----~~~~ 98 (333)
.|+|||.+|||||||+++|.+........+..+.+.....+.++ ....+.+|||||.. .+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~--------------~~~~~~l~DtpG~~~~~~~~~~ 67 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD--------------DGRSFVVADIPGLIEGASEGKG 67 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC--------------CCCeEEEEecCcccCcccccCC
Confidence 58999999999999999999765422211111122222223332 22469999999963 2222
Q ss_pred hHHhh---ccCCcEEEEEEECCCc-ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 99 CRSIL---YSQINGVIFVHDLSQR-RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 99 ~~~~~---~~~ad~vIlV~D~s~~-~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
+...+ +..+|++|+|+|+++. .+++.+..|.+++..... .....|+++|+||+|+.... .+
T Consensus 68 ~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~p~ivv~NK~Dl~~~~--~~--- 132 (170)
T cd01898 68 LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNP----------ELLEKPRIVVLNKIDLLDEE--EL--- 132 (170)
T ss_pred chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCc----------cccccccEEEEEchhcCCch--hh---
Confidence 23333 3469999999999999 899999999999877631 11368999999999997642 11
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+....+..... .+++++ +||+++.|++++++.+.+.
T Consensus 133 --~~~~~~~~~~~~------~~~~~~---------~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 133 --FELLKELLKELW------GKPVFP---------ISALTGEGLDELLRKLAEL 169 (170)
T ss_pred --HHHHHHHHhhCC------CCCEEE---------EecCCCCCHHHHHHHHHhh
Confidence 133444444331 246777 9999999999999888754
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=170.74 Aligned_cols=155 Identities=19% Similarity=0.239 Sum_probs=108.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCCCC------------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK--GSSFSRP------------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELW 88 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~ 88 (333)
+|+|+|.+|||||||+++|++ +.+...+ ..+.|.++..+...+. ...+.+.+|
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-------------~~~~~~~l~ 70 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT-------------YKDTKINIV 70 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE-------------ECCEEEEEE
Confidence 899999999999999999997 4554332 2234555555554443 356789999
Q ss_pred eCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 89 DISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 89 Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
||+|+++|......+++.+|++|+|||+++.. +.....|+..+... ++|+++|+||+|+....
T Consensus 71 DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~~---------------~~p~iiv~NK~Dl~~~~- 133 (194)
T cd01891 71 DTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALEL---------------GLKPIVVINKIDRPDAR- 133 (194)
T ss_pred ECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHHc---------------CCCEEEEEECCCCCCCC-
Confidence 99999999999999999999999999998753 33344455554433 58999999999997532
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
. ....+++.++...++...-...+++++ +||++|.|+.+
T Consensus 134 -~---~~~~~~~~~~~~~~~~~~~~~~~~iv~---------~Sa~~g~~~~~ 172 (194)
T cd01891 134 -P---EEVVDEVFDLFIELGATEEQLDFPVLY---------ASAKNGWASLN 172 (194)
T ss_pred -H---HHHHHHHHHHHHHhCCccccCccCEEE---------eehhccccccc
Confidence 1 111345555554443221111356777 99999988743
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-21 Score=183.44 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=111.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc--------
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH-------- 93 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~-------- 93 (333)
++|+|+|++|||||||+|+|++..+.....+..+.++..+.+.+++ ...+.||||+|.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~--------------~~~i~l~DT~G~~~~l~~~l 255 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD--------------GGEVLLTDTVGFIRDLPHEL 255 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC--------------CceEEEEecCcccccCCHHH
Confidence 6999999999999999999998876544444445666777777641 246899999996
Q ss_pred -hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 94 -ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 94 -e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
+.|..... .+.++|++|+|+|++++.+++++..|...+..... .+.|+++|+||+|+...
T Consensus 256 ie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~------------~~~piIlV~NK~Dl~~~------ 316 (351)
T TIGR03156 256 VAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGA------------EDIPQLLVYNKIDLLDE------ 316 (351)
T ss_pred HHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc------------CCCCEEEEEEeecCCCh------
Confidence 33444433 47899999999999999998888777766665532 26899999999999753
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+....+.. +. .++++ +||++|.|++++++.+.+.
T Consensus 317 -----~~v~~~~~--~~------~~~i~---------iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 317 -----PRIERLEE--GY------PEAVF---------VSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred -----HhHHHHHh--CC------CCEEE---------EEccCCCCHHHHHHHHHhh
Confidence 11111111 11 24566 9999999999988887653
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=156.76 Aligned_cols=157 Identities=20% Similarity=0.289 Sum_probs=125.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+++|.+|+|||||++++++..+...+.++.+.++....+.++ +..+.+.+||++|++++..++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~G~~~~~~~~ 67 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEED-------------GKTYKFNLLDTAGQEDYRAIR 67 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEEC-------------CEEEEEEEEECCCcccchHHH
Confidence 3799999999999999999999988878888888888877767665 445889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCc-ccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 101 SILYSQINGVIFVHDLSQR-RTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~-~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
..++..+++++.++|+... .++.... .|...+..... .+.|+++|+||+|+.... + .+
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~---~-----~~ 127 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE------------SNVPIILVGNKIDLRDAK---L-----KT 127 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc------------cCCcEEEEEEcccCCcch---h-----hH
Confidence 8889999999999999988 7777764 77777766642 268999999999997642 1 13
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l 225 (333)
.........+. .++++ +||++|.|++++++.+
T Consensus 128 ~~~~~~~~~~~------~~~~~---------~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 128 HVAFLFAKLNG------EPIIP---------LSAETGKNIDSAFKIV 159 (161)
T ss_pred HHHHHHhhccC------CceEE---------eecCCCCCHHHHHHHh
Confidence 33333333432 45777 9999999999988765
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-21 Score=157.11 Aligned_cols=168 Identities=22% Similarity=0.345 Sum_probs=126.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
++++|+|+|..|+||||++++|.+.. .....||.| |..+.+.++ .+.+++||+.||..++..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~---------------~~~L~iwDvGGq~~lr~~ 76 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYK---------------GYTLNIWDVGGQKTLRSY 76 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEec---------------ceEEEEEEcCCcchhHHH
Confidence 35899999999999999999999776 456677767 455666654 688999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
|..||..+|++|+|+|.+|+..++.....+.++..... ....|++|++||.|+... ++..+ +..
T Consensus 77 W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eer-----------laG~~~Lvlank~dl~~~----l~~~~-i~~ 140 (185)
T KOG0073|consen 77 WKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEER-----------LAGAPLLVLANKQDLPGA----LSLEE-ISK 140 (185)
T ss_pred HHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhh-----------hcCCceEEEEecCcCccc----cCHHH-HHH
Confidence 99999999999999999999988887665555443221 135799999999999843 22111 111
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+..+..-.. .-.++++- |||.+|.++.+++++++..+..+++
T Consensus 141 ~~~L~~l~k----s~~~~l~~---------cs~~tge~l~~gidWL~~~l~~r~~ 182 (185)
T KOG0073|consen 141 ALDLEELAK----SHHWRLVK---------CSAVTGEDLLEGIDWLCDDLMSRLF 182 (185)
T ss_pred hhCHHHhcc----ccCceEEE---------EeccccccHHHHHHHHHHHHHHHhc
Confidence 122221111 11356777 9999999999999999999988654
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=159.69 Aligned_cols=161 Identities=18% Similarity=0.190 Sum_probs=109.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
.|+|+|++|||||||+++|+...+.....++...++....+.... .....+.+|||+|++.|..++..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~------------~~~~~~~iiDtpG~~~~~~~~~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV------------LKIPGITFIDTPGHEAFTNMRAR 69 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc------------CCcceEEEEeCCCcHHHHHHHHH
Confidence 599999999999999999998887665444444444333333310 13567999999999999998888
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..+|++++|+|+++....+... .+..+... ++|+++|+||+|+..... +....
T Consensus 70 ~~~~~d~il~v~d~~~~~~~~~~~-~~~~~~~~---------------~~p~ivv~NK~Dl~~~~~---------~~~~~ 124 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIE-AIKLAKAA---------------NVPFIVALNKIDKPNANP---------ERVKN 124 (168)
T ss_pred HHhhcCEEEEEEECCCCccHHHHH-HHHHHHHc---------------CCCEEEEEEceecccccH---------HHHHH
Confidence 899999999999999854322221 22223222 589999999999874321 11111
Q ss_pred HHHHcCCC---CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 183 WVEKQGLL---PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 183 ~~~~~~~~---~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
....+... .+...+++++ +||++|.|++++++.+.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 125 ELSELGLQGEDEWGGDVQIVP---------TSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHhhccccccccCcCcEEE---------eecccCCCHHHHHHHHHHhh
Confidence 11222111 1112356777 99999999999988887653
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-21 Score=166.89 Aligned_cols=157 Identities=22% Similarity=0.234 Sum_probs=105.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC------
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG------ 92 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G------ 92 (333)
...++|+|+|.+|||||||+++|++..+...+.++ .++....+.+. .+.+|||+|
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~-----------------~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG-----------------DFILTDLPGFGFMSG 67 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec-----------------ceEEEeCCccccccc
Confidence 34579999999999999999999988775544443 34434444331 389999999
Q ss_pred -----chhhhhhHHhhcc----CCcEEEEEEECCCcccHHHHHHH------------HHHHHhcCCCCCCCCCCCCCCCC
Q 019959 93 -----HERYKDCRSILYS----QINGVIFVHDLSQRRTKTSLQKW------------AVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 93 -----~e~~~~~~~~~~~----~ad~vIlV~D~s~~~S~~~l~~~------------~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
+++++..+..++. .++++++|+|.++...+. ..| +..+.. .+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~---------------~~ 130 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE---------------LG 130 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH---------------cC
Confidence 5777776666654 357888888876532210 122 222222 26
Q ss_pred CcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCc--CCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 152 VPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSE--ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 152 ~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~--~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+|+++|+||+|+.... .+.+.++++.+++..... ..++++ |||++| |++++++.+.+.+
T Consensus 131 ~p~iiv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~---------~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 131 IPPIVAVNKMDKIKNR---------DEVLDEIAERLGLYPPWRQWQDIIAP---------ISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred CCeEEEEECccccCcH---------HHHHHHHHHHhcCCccccccCCcEEE---------EecccC-CHHHHHHHHHHhh
Confidence 8999999999997542 145677777777531111 124566 999999 9999999998765
Q ss_pred H
Q 019959 230 I 230 (333)
Q Consensus 230 ~ 230 (333)
.
T Consensus 192 ~ 192 (201)
T PRK04213 192 H 192 (201)
T ss_pred c
Confidence 3
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-21 Score=160.81 Aligned_cols=168 Identities=21% Similarity=0.274 Sum_probs=132.7
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
-.+..+++|+++|-.++||||++++|..+++... .||+|..+ ..+.+. ++.+.+||..||++
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV--E~v~yk---------------n~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV--ETVEYK---------------NISFTVWDVGGQEK 73 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce--eEEEEc---------------ceEEEEEecCCCcc
Confidence 3466789999999999999999999998887655 88988654 455553 67899999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
++.++..|+...+++|||+|.+|++.+...+.-+..+..+.. ..+.|+++.+||.|+...- .
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~-----------l~~~~llv~aNKqD~~~al--s----- 135 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE-----------LRNAPLLVFANKQDLPGAL--S----- 135 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc-----------cCCceEEEEechhhccccC--C-----
Confidence 999999999999999999999999999998887777766632 3489999999999998652 1
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.++.+.+++........++. .|+|.+|.|+.++++.+...+.+
T Consensus 136 ----~~ei~~~L~l~~l~~~~w~iq--------~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 136 ----AAEITNKLGLHSLRSRNWHIQ--------STCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred ----HHHHHhHhhhhccCCCCcEEe--------eccccccccHHHHHHHHHHHHhc
Confidence 333344444332222233444 29999999999999999887754
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=156.94 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=107.6
Q ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh------h
Q 019959 26 VVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD------C 99 (333)
Q Consensus 26 ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~------~ 99 (333)
|+|++|||||||++++++..+.....++++.+.....+.++ ...+.+|||||++.+.. +
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~liDtpG~~~~~~~~~~~~~ 65 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG---------------GKEIEIVDLPGTYSLSPYSEDEKV 65 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC---------------CeEEEEEECCCccccCCCChhHHH
Confidence 58999999999999999886555555555666656666654 24689999999877653 3
Q ss_pred HHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 100 RSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 100 ~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
...++. .+|++|+|+|+++.... ..|..++... ++|+++|+||+|+.... .+.
T Consensus 66 ~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~~---------------~~~~iiv~NK~Dl~~~~--~~~----- 120 (158)
T cd01879 66 ARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLEL---------------GLPVVVALNMIDEAEKR--GIK----- 120 (158)
T ss_pred HHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHHc---------------CCCEEEEEehhhhcccc--cch-----
Confidence 455554 89999999999986543 3455555443 58999999999997642 222
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.....+++.++ +++++ +||++|.|++++++.+.+.
T Consensus 121 ~~~~~~~~~~~-------~~~~~---------iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 121 IDLDKLSELLG-------VPVVP---------TSARKGEGIDELKDAIAEL 155 (158)
T ss_pred hhHHHHHHhhC-------CCeEE---------EEccCCCCHHHHHHHHHHH
Confidence 33456666665 46777 9999999999998888764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=152.03 Aligned_cols=114 Identities=33% Similarity=0.584 Sum_probs=86.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
||+|+|+.|||||||+++|++..+. ..+..+.+.++........ .....+.+||++|++.+...+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~g~~~~~~~~ 67 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-------------GDRQSLQFWDFGGQEEFYSQH 67 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-------------TEEEEEEEEEESSSHCHHCTS
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-------------CCceEEEEEecCccceecccc
Confidence 7999999999999999999988776 2223333444544444443 344559999999999988877
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHH---HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQ---KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~---~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
..++..+|++|+|||++++.||+++. .|+..+.... .++|++|||||.|
T Consensus 68 ~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-------------~~~piilv~nK~D 119 (119)
T PF08477_consen 68 QFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-------------KNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-------------SCSEEEEEEE-TC
T ss_pred cchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-------------CCCCEEEEEeccC
Confidence 77799999999999999999999874 4666666653 3699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-21 Score=160.55 Aligned_cols=148 Identities=22% Similarity=0.247 Sum_probs=105.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh------
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER------ 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~------ 95 (333)
|+|+++|.+|||||||+|+|++........+..+.+.....+.+. ...+.++|+||.-.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~---------------~~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG---------------DQQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET---------------TEEEEEEE----SSSSSSSH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec---------------CceEEEEECCCcccCCCCCc
Confidence 689999999999999999999887655555665666666666664 36799999999311
Q ss_pred hhhhHHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 96 YKDCRSIL--YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 96 ~~~~~~~~--~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
-......+ ..+.|++|+|.|+++.+.-.+ ...++.+. ++|+++|.||+|+....+..+.
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~---l~~ql~e~---------------g~P~vvvlN~~D~a~~~g~~id- 126 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATNLERNLY---LTLQLLEL---------------GIPVVVVLNKMDEAERKGIEID- 126 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGGHHHHHH---HHHHHHHT---------------TSSEEEEEETHHHHHHTTEEE--
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCHHHHHH---HHHHHHHc---------------CCCEEEEEeCHHHHHHcCCEEC-
Confidence 12222233 368999999999998654333 34445454 6899999999999887554433
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l 225 (333)
...+.+.+| +|++. +||+++.|++++++.+
T Consensus 127 ------~~~Ls~~Lg-------~pvi~---------~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 127 ------AEKLSERLG-------VPVIP---------VSARTGEGIDELKDAI 156 (156)
T ss_dssp ------HHHHHHHHT-------S-EEE---------EBTTTTBTHHHHHHHH
T ss_pred ------HHHHHHHhC-------CCEEE---------EEeCCCcCHHHHHhhC
Confidence 677788888 67888 9999999999988764
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=173.90 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=112.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----hhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----YKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~~~ 98 (333)
.|+|||.+|||||||+++|++........+..+.+...-.+.+. ....+.|||+||.-+ ...
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~--------------~~~~~~i~D~PGli~ga~~~~g 225 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD--------------DYKSFVIADIPGLIEGASEGAG 225 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC--------------CCcEEEEEeCCCccCCCCcccc
Confidence 69999999999999999999764332222222333333344442 234589999999532 222
Q ss_pred hHHh---hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 99 CRSI---LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 99 ~~~~---~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+... .+..++++|+|+|+++.++++.+..|..++..+.. ...+.|++||+||+|+.+.. .+.
T Consensus 226 Lg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~----------~L~~kp~IIV~NKiDL~~~~--~~~--- 290 (335)
T PRK12299 226 LGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSP----------ELADKPRILVLNKIDLLDEE--EER--- 290 (335)
T ss_pred HHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhh----------hcccCCeEEEEECcccCCch--hHH---
Confidence 3333 45579999999999998899999999999987631 12368999999999997542 111
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.+..+.+++..+ .++++ |||+++.|++++++.+.+.+.+
T Consensus 291 -~~~~~~~~~~~~-------~~i~~---------iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 291 -EKRAALELAALG-------GPVFL---------ISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred -HHHHHHHHHhcC-------CCEEE---------EEcCCCCCHHHHHHHHHHHHHh
Confidence 123444444333 45777 9999999999999999877654
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-23 Score=171.87 Aligned_cols=176 Identities=26% Similarity=0.441 Sum_probs=149.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
..-.+|+.|+|+.|||||+++.+++...|...+..|+|.++..+.+.++ +...++++|||++||++|.
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wd------------d~t~vRlqLwdIagQerfg 89 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWD------------DKTIVRLQLWDIAGQERFG 89 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccC------------hHHHHHHHHhcchhhhhhc
Confidence 3456899999999999999999999999988999999999998888885 3667889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...||+.+++.++|||+|+..+|+....|.+++..... -|.+..+|+|+..||||.......+. .
T Consensus 90 ~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~q--------Lpng~Pv~~vllankCd~e~~a~~~~-----~ 156 (229)
T KOG4423|consen 90 NMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQ--------LPNGTPVPCVLLANKCDQEKSAKNEA-----T 156 (229)
T ss_pred ceEEEEecCCcceEEEEEccccccccHHHHHHHhccCccc--------CCCCCcchheeccchhccChHhhhhh-----H
Confidence 9999999999999999999999999999999999865543 25567899999999999986532111 1
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
....++++++|+..|+ | +|+|.+.|++|+-..+++.++.+.
T Consensus 157 ~~~d~f~kengf~gwt------e---------ts~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 157 RQFDNFKKENGFEGWT------E---------TSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred HHHHHHHhccCcccee------e---------eccccccChhHHHHHHHHHHHhhc
Confidence 5577788889986544 4 999999999998888888776653
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=177.49 Aligned_cols=152 Identities=22% Similarity=0.267 Sum_probs=112.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
..+||+|+|++|||||||+|+|++... .....++.+.++....+.++ .+.+.+|||+|..++..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~---------------g~~v~l~DTaG~~~~~~ 266 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN---------------GILIKLLDTAGIREHAD 266 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC---------------CEEEEEeeCCCcccchh
Confidence 346999999999999999999998653 22333444667767777664 35679999999755432
Q ss_pred h--------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 99 C--------RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 99 ~--------~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
. ...+++.+|++|+|||++++.+++.. |+..+... +.|+++|+||+|+...+
T Consensus 267 ~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~---------------~~piIlV~NK~Dl~~~~--- 326 (442)
T TIGR00450 267 FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNKS---------------KKPFILVLNKIDLKINS--- 326 (442)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhhC---------------CCCEEEEEECccCCCcc---
Confidence 2 23568899999999999999988875 77766433 57999999999996431
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
...+++.++ +++++ +||++ .|++++++.+.+.+.+.
T Consensus 327 ---------~~~~~~~~~-------~~~~~---------vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 327 ---------LEFFVSSKV-------LNSSN---------LSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred ---------hhhhhhhcC-------CceEE---------EEEec-CCHHHHHHHHHHHHHHH
Confidence 233444444 45677 99998 59999999998877653
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=179.43 Aligned_cols=155 Identities=23% Similarity=0.216 Sum_probs=108.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
....+|+|||.+|||||||+|+|++..+ .....++++.+.....+.+. ...+.||||+|.+.
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~---------------~~~~~l~DT~G~~~~~ 100 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN---------------GRRFTVVDTGGWEPDA 100 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC---------------CcEEEEEeCCCcCCcc
Confidence 3446999999999999999999998764 23444444555555555543 24588999999752
Q ss_pred ------hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 96 ------YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 96 ------~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
+......++..+|++|+|||+++..++.. ..|...+... ++|+++|+||+|+....
T Consensus 101 ~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~~---------------~~piilV~NK~Dl~~~~-- 162 (472)
T PRK03003 101 KGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRRS---------------GKPVILAANKVDDERGE-- 162 (472)
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---------------CCCEEEEEECccCCccc--
Confidence 34445567889999999999999877653 3455555433 68999999999986431
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+....+ .+++. . .++ |||++|.|++++++.+++.+.
T Consensus 163 -------~~~~~~~--~~g~~-----~-~~~---------iSA~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 163 -------ADAAALW--SLGLG-----E-PHP---------VSALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred -------hhhHHHH--hcCCC-----C-eEE---------EEcCCCCCcHHHHHHHHhhcc
Confidence 0222222 33432 1 245 999999999999999887763
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-20 Score=180.61 Aligned_cols=161 Identities=20% Similarity=0.163 Sum_probs=113.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-----
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH----- 93 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~----- 93 (333)
..+||+|+|.+|||||||+|+|++..+ .....++.+.+.....+.++ + ..+.||||+|.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~-------------~--~~~~l~DTaG~~~~~~ 274 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG-------------G--KTWRFVDTAGLRRRVK 274 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC-------------C--EEEEEEECCCcccccc
Confidence 458999999999999999999998764 23444555666666666654 2 34679999994
Q ss_pred -----hhhhhhH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 94 -----ERYKDCR-SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 94 -----e~~~~~~-~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
+.|..+. ..+++.+|++|+|||+++..++..+. ++..+... +.|+|||+||+|+....
T Consensus 275 ~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~~---------------~~piIiV~NK~Dl~~~~ 338 (472)
T PRK03003 275 QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIEA---------------GRALVLAFNKWDLVDED 338 (472)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---------------CCCEEEEEECcccCChh
Confidence 4444443 23578999999999999999988874 55555443 58999999999997532
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+. ....++.+.+.... .+|+++ |||++|.|++++|+.+.+.+.
T Consensus 339 ~~~-------~~~~~i~~~l~~~~---~~~~~~---------~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 339 RRY-------YLEREIDRELAQVP---WAPRVN---------ISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred HHH-------HHHHHHHHhcccCC---CCCEEE---------EECCCCCCHHHHHHHHHHHHH
Confidence 110 11122222222211 256777 999999999999999987654
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=175.06 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=110.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh------
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER------ 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~------ 95 (333)
.+|+|+|++|||||||+|+|++..+.....+..+.+.....+.+.+ ...+.||||+|..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~--------------~~~~~l~DTaG~~r~lp~~l 263 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD--------------VGETVLADTVGFIRHLPHDL 263 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC--------------CCeEEEEecCcccccCCHHH
Confidence 3899999999999999999998776544444455666666666641 12578999999633
Q ss_pred ---hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 96 ---YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 96 ---~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
|.... ..+..+|++|+|+|++++.+++.+..|...+..... .++|+++|+||+|+.....
T Consensus 264 ve~f~~tl-~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~------------~~~pvIiV~NKiDL~~~~~---- 326 (426)
T PRK11058 264 VAAFKATL-QETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA------------HEIPTLLVMNKIDMLDDFE---- 326 (426)
T ss_pred HHHHHHHH-HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc------------CCCCEEEEEEcccCCCchh----
Confidence 22222 236789999999999999988887665555544421 2689999999999974310
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCC-ccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELP-LTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.... ....+ ++ +++ +||++|.|++++++.+.+.+...
T Consensus 327 -----~~~~--~~~~~-------~~~~v~---------ISAktG~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 327 -----PRID--RDEEN-------KPIRVW---------LSAQTGAGIPLLFQALTERLSGE 364 (426)
T ss_pred -----HHHH--HHhcC-------CCceEE---------EeCCCCCCHHHHHHHHHHHhhhc
Confidence 1111 11122 23 355 99999999999999998887543
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-20 Score=150.11 Aligned_cols=170 Identities=19% Similarity=0.320 Sum_probs=139.2
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
...-.+||.++|++.+|||||+-.+.++.+.+++.++.|+.+..+.+.+. +..+.+.|||..|++++
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-------------~t~IsfSIwdlgG~~~~ 82 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-------------GTDISFSIWDLGGQREF 82 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-------------ceEEEEEEEecCCcHhh
Confidence 44556899999999999999999999999999999999999999999887 68899999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..+.+..+.++-+++|+||++.+.++..+..|+.+.+...+ .-+| |+||+|.|+.-.-.++ ..+.+
T Consensus 83 ~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk------------tAiP-ilvGTKyD~fi~lp~e-~Q~~I 148 (205)
T KOG1673|consen 83 INMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK------------TAIP-ILVGTKYDLFIDLPPE-LQETI 148 (205)
T ss_pred hccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC------------ccce-EEeccchHhhhcCCHH-HHHHH
Confidence 99999999999999999999999999999999999877753 2345 5789999975322111 12234
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
...++.+|+-.+. ++|. ||+..+.|+...|.-+...+
T Consensus 149 ~~qar~YAk~mnA-------sL~F---------~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 149 SRQARKYAKVMNA-------SLFF---------CSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred HHHHHHHHHHhCC-------cEEE---------eeccccccHHHHHHHHHHHH
Confidence 4678888888775 3444 99999977776666555444
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-20 Score=148.58 Aligned_cols=161 Identities=20% Similarity=0.367 Sum_probs=128.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++.+.++|-.++|||||+|....+++.+...+|.|.. .+.++ ...+.+.+||.+|+.+|+.++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~t---------------kgnvtiklwD~gGq~rfrsmW 82 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKVT---------------KGNVTIKLWDLGGQPRFRSMW 82 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEec---------------cCceEEEEEecCCCccHHHHH
Confidence 4689999999999999999999999999999998854 44443 357889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..|+++++++++|+|+.+++.+...+.-++.+... |....+|++|.|||.|+...- ..
T Consensus 83 erycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k-----------~~l~gip~LVLGnK~d~~~AL-----------~~ 140 (186)
T KOG0075|consen 83 ERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDK-----------PSLTGIPLLVLGNKIDLPGAL-----------SK 140 (186)
T ss_pred HHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcc-----------hhhcCCcEEEecccccCcccc-----------cH
Confidence 99999999999999999998877666655555444 223589999999999998752 24
Q ss_pred HHHHHHcCCCCCCc-CCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 181 ~~~~~~~~~~~~~~-~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+..+.|+..... ++-.|- +|+|+..|++...+.+.++-
T Consensus 141 ~~li~rmgL~sitdREvcC~s---------iScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 141 IALIERMGLSSITDREVCCFS---------ISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred HHHHHHhCccccccceEEEEE---------EEEcCCccHHHHHHHHHHHh
Confidence 55667778754332 234455 99999999999888887653
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=168.39 Aligned_cols=161 Identities=15% Similarity=0.120 Sum_probs=111.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----hh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----YK 97 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~~ 97 (333)
..|+|||.+|||||||+++|+.........+..+.......+.++ ....+.||||||..+ ..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~--------------~~~~~~i~D~PGli~~a~~~~ 223 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD--------------DGRSFVIADIPGLIEGASEGA 223 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC--------------CceEEEEEeCCCcccCCcccc
Confidence 379999999999999999999765322211111223333344442 236689999999632 22
Q ss_pred hhHHhh---ccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 98 DCRSIL---YSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 98 ~~~~~~---~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
.+...| +..++++|+|+|+++. ++++.+..|..++..... ...+.|++||+||+|+.... .
T Consensus 224 gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~----------~l~~kp~IIV~NK~DL~~~~--~- 290 (329)
T TIGR02729 224 GLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP----------ELAEKPRIVVLNKIDLLDEE--E- 290 (329)
T ss_pred cHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh----------hhccCCEEEEEeCccCCChH--H-
Confidence 333344 4469999999999987 678888889888876531 11368999999999997541 1
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+..+.+++.++ +++++ +||+++.|++++++.+.+.+
T Consensus 291 ----~~~~~~~l~~~~~-------~~vi~---------iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 291 ----LAELLKELKKALG-------KPVFP---------ISALTGEGLDELLYALAELL 328 (329)
T ss_pred ----HHHHHHHHHHHcC-------CcEEE---------EEccCCcCHHHHHHHHHHHh
Confidence 1244555555554 35777 99999999999998887653
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=154.15 Aligned_cols=141 Identities=18% Similarity=0.326 Sum_probs=99.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-----hhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH-----ERYK 97 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~-----e~~~ 97 (333)
+|+++|.+|||||||+|++.+.... ...+.+ +.+. .. .+|||||. +.+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~-------------~~----~~iDtpG~~~~~~~~~~ 56 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFN-------------DK----GDIDTPGEYFSHPRWYH 56 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEEC-------------CC----CcccCCccccCCHHHHH
Confidence 7999999999999999998754311 112222 2222 11 26999996 3333
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+. ..+.++|++|+|+|+++.+++. ..|+..+. .+.|+++|+||+|+.+.+ .
T Consensus 57 ~~~-~~~~~ad~il~v~d~~~~~s~~--~~~~~~~~----------------~~~~ii~v~nK~Dl~~~~---------~ 108 (158)
T PRK15467 57 ALI-TTLQDVDMLIYVHGANDPESRL--PAGLLDIG----------------VSKRQIAVISKTDMPDAD---------V 108 (158)
T ss_pred HHH-HHHhcCCEEEEEEeCCCccccc--CHHHHhcc----------------CCCCeEEEEEccccCccc---------H
Confidence 333 3478999999999999988763 34555431 257899999999986431 2
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.+.++++++++. .|+++ +||++|.|++++++.+.+.+.+
T Consensus 109 ~~~~~~~~~~~~~-----~p~~~---------~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 109 AATRKLLLETGFE-----EPIFE---------LNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHHHcCCC-----CCEEE---------EECCCccCHHHHHHHHHHhchh
Confidence 5677888887753 47888 9999999999999888776543
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=156.05 Aligned_cols=173 Identities=16% Similarity=0.148 Sum_probs=104.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC----CCCCC-----CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG----SSFSR-----PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~----~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
++|+|+|+.|||||||+++|+.. .+... ...|++..+....+... ...+......+..+.+.+|||||
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~DtpG 77 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKP---KHLRELINPGEENLQITLVDCPG 77 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEeccc---ccccccccccccCceEEEEECCC
Confidence 58999999999999999999962 11111 12333433333333211 01111111234567899999999
Q ss_pred chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 93 HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 93 ~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
+..+..........+|++++|+|+++.........|. +.... +.|+++|+||+|+.....+...
T Consensus 78 ~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--------------~~~~iiv~NK~Dl~~~~~~~~~ 141 (192)
T cd01889 78 HASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--------------CKKLIVVLNKIDLIPEEERERK 141 (192)
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--------------CCCEEEEEECcccCCHHHHHHH
Confidence 9766444434456789999999999865544433332 11221 4699999999999753211111
Q ss_pred cccHHHHHHHHH-HHc---CCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWV-EKQ---GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 173 ~~~~~~~~~~~~-~~~---~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.++..+.. ..+ +. ..+++++ +||++|.|++++++.+.+.+.
T Consensus 142 ----~~~~~~~l~~~~~~~~~----~~~~vi~---------iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 142 ----IEKMKKKLQKTLEKTRF----KNSPIIP---------VSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred ----HHHHHHHHHHHHHhcCc----CCCCEEE---------EeccCCCCHHHHHHHHHhccc
Confidence 12222211 111 21 1356777 999999999998888776543
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-20 Score=157.18 Aligned_cols=163 Identities=23% Similarity=0.350 Sum_probs=135.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+|++++|+.|.|||+++++.+.++|...+.+|+|+....-...-+ ...+++..|||+|+|.+..+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn-------------~g~irf~~wdtagqEk~ggl 75 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTN-------------RGQIRFNVWDTAGQEKKGGL 75 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecc-------------cCcEEEEeeecccceeeccc
Confidence 36799999999999999999999999999999999998866555433 33699999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...+|-++.+.|++||++.+-++.++..|...+.+.+. ++||+++|||.|..... +. ..
T Consensus 76 rdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~-------------NiPiv~cGNKvDi~~r~---~k-----~k 134 (216)
T KOG0096|consen 76 RDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE-------------NIPIVLCGNKVDIKARK---VK-----AK 134 (216)
T ss_pred ccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhc-------------CCCeeeeccceeccccc---cc-----cc
Confidence 99999999999999999999999999999999999875 89999999999987642 11 00
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.-.+-++. +|.|+| +||+++.|.+..|-.+.+.+.-.
T Consensus 135 ~v~~~rkk-------nl~y~~---------iSaksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 135 PVSFHRKK-------NLQYYE---------ISAKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred cceeeecc-------cceeEE---------eecccccccccchHHHhhhhcCC
Confidence 11111122 356777 99999999999999988776543
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=167.72 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=101.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-h
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-Y 96 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-~ 96 (333)
.+.++|+|+|++|||||||+|+|++..+.. ...+..+.+.....+..+ ...+.||||||..+ +
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~---------------~~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK---------------DTQVILYDTPGIFEPK 114 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC---------------CeEEEEEECCCcCCCc
Confidence 345799999999999999999999887642 111111223333444443 34689999999742 2
Q ss_pred hhhH-------HhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 97 KDCR-------SILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 97 ~~~~-------~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
..+. ...+..+|++|+|+|.++ +|..+. .|+..+... +.|+++|+||+|+....
T Consensus 115 ~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---------------~~p~IlViNKiDl~~~~- 176 (339)
T PRK15494 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---------------NIVPIFLLNKIDIESKY- 176 (339)
T ss_pred ccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---------------CCCEEEEEEhhcCcccc-
Confidence 2221 134779999999999765 455553 455555544 45778899999996431
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
..++.+++...+. ..++++ +||++|.|++++++.+.+.
T Consensus 177 --------~~~~~~~l~~~~~-----~~~i~~---------iSAktg~gv~eL~~~L~~~ 214 (339)
T PRK15494 177 --------LNDIKAFLTENHP-----DSLLFP---------ISALSGKNIDGLLEYITSK 214 (339)
T ss_pred --------HHHHHHHHHhcCC-----CcEEEE---------EeccCccCHHHHHHHHHHh
Confidence 2445555554331 134666 9999999988888777654
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-19 Score=144.18 Aligned_cols=155 Identities=28% Similarity=0.491 Sum_probs=113.3
Q ss_pred EECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhc
Q 019959 26 VVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILY 104 (333)
Q Consensus 26 ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~ 104 (333)
|+|.+|+|||||++++++... .....+|. .++........ .....+.+||++|+..+......++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVD-------------GKKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEEC-------------CEEEEEEEEecCChHHHHhHHHHHh
Confidence 589999999999999998876 45555565 66666666543 4567899999999998888878889
Q ss_pred cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHH
Q 019959 105 SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 184 (333)
Q Consensus 105 ~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~ 184 (333)
..+|++|+|+|+++..++..+..|......... ...+|+++|+||+|+........ .......
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ivv~nk~D~~~~~~~~~------~~~~~~~ 129 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKE-----------GENIPIILVGNKIDLPEERVVSE------EELAEQL 129 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhc-----------cCCCcEEEEEeccccccccchHH------HHHHHHH
Confidence 999999999999999999988877322221111 24799999999999986532110 1101122
Q ss_pred HHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 185 EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 185 ~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
.... .+++++ +||+++.|++++++.+.
T Consensus 130 ~~~~------~~~~~~---------~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 130 AKEL------GVPYFE---------TSAKTGENVEELFEELA 156 (157)
T ss_pred Hhhc------CCcEEE---------EecCCCCChHHHHHHHh
Confidence 2222 256777 99999999999888765
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=153.95 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=103.9
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
.+.++...++|+|+|++|||||||+++|++..+...+..+.+.+.....+..+ + .+.+|||+|.
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------~---~~~liDtpG~ 74 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-------------D---GFRLVDLPGY 74 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-------------C---cEEEEeCCCC
Confidence 35566778899999999999999999999886555555566655544444332 1 4899999994
Q ss_pred ----------hhhhhhHHhhcc---CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 94 ----------ERYKDCRSILYS---QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 94 ----------e~~~~~~~~~~~---~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
+.+..+...+++ .+|++|+|+|++++-+..... ++..+... ++|+++|+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~~---------------~~pviiv~nK 138 (179)
T TIGR03598 75 GYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRER---------------GIPVLIVLTK 138 (179)
T ss_pred ccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHHc---------------CCCEEEEEEC
Confidence 334444445555 368999999999876655542 23333333 5899999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDK 219 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~ 219 (333)
+|+........ ..+++++++...+. ..++++ +||++|.|++
T Consensus 139 ~D~~~~~~~~~----~~~~i~~~l~~~~~-----~~~v~~---------~Sa~~g~gi~ 179 (179)
T TIGR03598 139 ADKLKKSELNK----QLKKIKKALKKDAD-----DPSVQL---------FSSLKKTGID 179 (179)
T ss_pred cccCCHHHHHH----HHHHHHHHHhhccC-----CCceEE---------EECCCCCCCC
Confidence 99975421111 12444444444321 235676 9999998873
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-19 Score=162.61 Aligned_cols=151 Identities=17% Similarity=0.130 Sum_probs=100.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh----
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY---- 96 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~---- 96 (333)
+|+|+|.+|||||||+|+|++..+. .....|.. +. .+.+... ....+.+|||||....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~~-i~~i~~~--------------~~~qii~vDTPG~~~~~~~l 65 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-NR-ISGIHTT--------------GASQIIFIDTPGFHEKKHSL 65 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-Cc-EEEEEEc--------------CCcEEEEEECcCCCCCcchH
Confidence 7999999999999999999988653 22222322 21 1222221 2346899999996432
Q ss_pred ----hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 97 ----KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 97 ----~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
......++..+|++++|+|+++..+.+ ..++..+... +.|+++|+||+|+.... .
T Consensus 66 ~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~~---------------~~p~ilV~NK~Dl~~~~--~-- 124 (270)
T TIGR00436 66 NRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQNL---------------KRPVVLTRNKLDNKFKD--K-- 124 (270)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHhc---------------CCCEEEEEECeeCCCHH--H--
Confidence 111234578999999999999987765 3455555443 58999999999997431 1
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.+....++...++ .++++ +||++|.|++++++.+.+.
T Consensus 125 ---~~~~~~~~~~~~~~------~~v~~---------iSA~~g~gi~~L~~~l~~~ 162 (270)
T TIGR00436 125 ---LLPLIDKYAILEDF------KDIVP---------ISALTGDNTSFLAAFIEVH 162 (270)
T ss_pred ---HHHHHHHHHhhcCC------CceEE---------EecCCCCCHHHHHHHHHHh
Confidence 12334444444332 14666 9999999999888877654
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.4e-19 Score=146.68 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=98.1
Q ss_pred EEECCCCCCHHHHHHHHHcCCC--CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh----
Q 019959 25 LVVGDSGVGKTSLVNLIVKGSS--FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD---- 98 (333)
Q Consensus 25 ~ivG~~~vGKSSLl~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~---- 98 (333)
+++|.+|||||||+++|++... ..... ..+.+.......++ ...+.+|||||...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~-~~t~~~~~~~~~~~---------------~~~~~i~DtpG~~~~~~~~~~ 64 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTP-GVTRDRIYGEAEWG---------------GREFILIDTGGIEPDDEGISK 64 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCC-CceeCceeEEEEEC---------------CeEEEEEECCCCCCchhHHHH
Confidence 5899999999999999997642 22222 22333333344332 36799999999877543
Q ss_pred ----hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 99 ----CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 99 ----~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
.....+..+|++|+|+|.++..+.... .+...+... +.|+++|+||+|+....
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~---------------~~piiiv~nK~D~~~~~------- 121 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRKS---------------KKPVILVVNKVDNIKEE------- 121 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHhc---------------CCCEEEEEECcccCChH-------
Confidence 333467889999999999887655443 122223332 58999999999998652
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.. ......+++. ++++ +||++|.|++++++.+++.
T Consensus 122 ---~~-~~~~~~~~~~------~~~~---------~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 122 ---DE-AAEFYSLGFG------EPIP---------ISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ---HH-HHHHHhcCCC------CeEE---------EecccCCCHHHHHHHHHhh
Confidence 11 2222334431 4566 9999999999999988764
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-19 Score=151.58 Aligned_cols=163 Identities=20% Similarity=0.210 Sum_probs=108.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcc----------------cceeEEEEEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQT----------------IGCTVGVKHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
+|+|+|.+|||||||+++|++.........+ +..+.....+.+ ....+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW---------------PDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee---------------CCEEEE
Confidence 4899999999999999999987665433211 111222222222 246799
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
+|||+|+..+...+..++..+|++++|+|+++..+.... .++..+... +.|+++|+||+|+...
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~---------------~~~i~iv~nK~D~~~~ 129 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIAREG---------------GLPIIVAINKIDRVGE 129 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHHC---------------CCCeEEEEECCCCcch
Confidence 999999999988888889999999999999987655433 344444432 6899999999999863
Q ss_pred cCCccCcccHHHHHHHHHHHcCCC-------CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLL-------PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~-------~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..... ..+.+++..+..+.. ......++++ +||++|.|++++++.+.+.+
T Consensus 130 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 130 EDLEE----VLREIKELLGLIGFISTKEEGTRNGLLVPIVP---------GSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcHHH----HHHHHHHHHccccccchhhhhcccCCcceEEE---------EecccCcCHHHHHHHHHhhC
Confidence 21111 113333333333320 0111356666 99999999988888777653
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=176.14 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=117.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-------CCCCCCc------ccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEe
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS-------SFSRPSQ------TIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWD 89 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~-------~~~~~~~------t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~D 89 (333)
+|+|+|..++|||||+++|+... +...+.. +.|.++....+.+.- ...++..+.++|||
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~--------~~~~g~~~~l~liD 76 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNY--------KAKDGETYVLNLID 76 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEE--------EcCCCCEEEEEEEE
Confidence 79999999999999999998642 2222222 235666554443310 00125678999999
Q ss_pred CCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 90 ISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 90 t~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
|||+++|......++..+|++|+|||+++..+++.+..|...+. . ++|+++|+||+|+.....
T Consensus 77 TPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~---------------~ipiIiViNKiDl~~~~~- 139 (595)
T TIGR01393 77 TPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-N---------------DLEIIPVINKIDLPSADP- 139 (595)
T ss_pred CCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c---------------CCCEEEEEECcCCCccCH-
Confidence 99999999999999999999999999999888887777765442 2 579999999999964310
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+...++++.+++.. ..+++ +||++|.|++++++.+.+.+
T Consensus 140 -------~~~~~el~~~lg~~~----~~vi~---------vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 140 -------ERVKKEIEEVIGLDA----SEAIL---------ASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred -------HHHHHHHHHHhCCCc----ceEEE---------eeccCCCCHHHHHHHHHHhC
Confidence 133456666666421 13556 99999999999888887654
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=166.43 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=111.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch----hhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE----RYKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e----~~~~ 98 (333)
.|+|||.+|||||||++++++........+..+.+...-.+.++ ....+.|||+||.. ....
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~--------------~~~~~~laD~PGliega~~~~g 225 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD--------------DGRSFVMADIPGLIEGASEGVG 225 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe--------------CCceEEEEECCCCcccccccch
Confidence 79999999999999999999765322211221222222333332 13568999999953 2223
Q ss_pred hHHhh---ccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 99 CRSIL---YSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 99 ~~~~~---~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
+...| +..++++|+|+|+++. +.++++..|..++..+.. ...+.|++||+||+|+...
T Consensus 226 Lg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~----------~L~~kP~IVV~NK~DL~~~------ 289 (424)
T PRK12297 226 LGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP----------RLLERPQIVVANKMDLPEA------ 289 (424)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch----------hccCCcEEEEEeCCCCcCC------
Confidence 43444 4469999999999865 678888889888877631 1236899999999998532
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.+..+.+++.++ .++++ +||+++.|++++++.+.+.+..
T Consensus 290 ----~e~l~~l~~~l~-------~~i~~---------iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 290 ----EENLEEFKEKLG-------PKVFP---------ISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred ----HHHHHHHHHHhC-------CcEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 144566666665 35666 9999999999999999876644
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.7e-19 Score=172.04 Aligned_cols=147 Identities=22% Similarity=0.228 Sum_probs=108.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
.++|+|+|++|||||||+|+|++... .....+..+.++....+.++ ...+.+|||+|.+++...
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~---------------g~~i~l~DT~G~~~~~~~ 279 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD---------------GIPLRLIDTAGIRETDDE 279 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC---------------CeEEEEEeCCCCCCCccH
Confidence 37999999999999999999998764 23344444566666666664 356899999997654332
Q ss_pred --------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 100 --------RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 100 --------~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
...++..+|++|+|||++++.+++....|.. . .+.|+++|+||+|+....
T Consensus 280 ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~--------------~~~piiiV~NK~DL~~~~---- 337 (449)
T PRK05291 280 VEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE----L--------------KDKPVIVVLNKADLTGEI---- 337 (449)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh----c--------------CCCCcEEEEEhhhccccc----
Confidence 2235789999999999999988887655543 1 268999999999997541
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
. .. ... ..++++ +||++|.|++++++.+.+.+.
T Consensus 338 ------~-~~---~~~-------~~~~i~---------iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 338 ------D-LE---EEN-------GKPVIR---------ISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred ------h-hh---hcc-------CCceEE---------EEeeCCCCHHHHHHHHHHHHh
Confidence 1 11 111 245666 999999999999999887764
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=150.52 Aligned_cols=164 Identities=19% Similarity=0.230 Sum_probs=107.9
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
++.+....++|+|+|.+|||||||+++|++..+.....++.+.+........ ...+.||||+|.
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----------------~~~l~l~DtpG~ 80 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV----------------NDKLRLVDLPGY 80 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec----------------CCeEEEeCCCCC
Confidence 3445567789999999999999999999988766666666666544433322 246999999993
Q ss_pred ----------hhhhhhHHhhccCC---cEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 94 ----------ERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 94 ----------e~~~~~~~~~~~~a---d~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
+++..+...++..+ +++++|+|.+++.+.... .+...+... ++|+++|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~~---------------~~~~iiv~nK 144 (196)
T PRK00454 81 GYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKEY---------------GIPVLIVLTK 144 (196)
T ss_pred CCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHHc---------------CCcEEEEEEC
Confidence 44555555556544 688899998876554432 112222222 5799999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+|+.....+... .+.+..+.... .+++++ +||+++.|++++++.+.+.+
T Consensus 145 ~Dl~~~~~~~~~----~~~i~~~l~~~-------~~~~~~---------~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 145 ADKLKKGERKKQ----LKKVRKALKFG-------DDEVIL---------FSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred cccCCHHHHHHH----HHHHHHHHHhc-------CCceEE---------EEcCCCCCHHHHHHHHHHHh
Confidence 999754211110 12222222222 145777 99999999999888876554
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=143.85 Aligned_cols=146 Identities=22% Similarity=0.246 Sum_probs=102.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh--
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD-- 98 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~-- 98 (333)
++|+++|++|+|||||++++++..+. ....+....++....+.+. ...+.+|||+|..++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG---------------GIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC---------------CEEEEEEECCCcCCCcchH
Confidence 58999999999999999999977642 1222333334434444332 35689999999655432
Q ss_pred ------hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 99 ------CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 99 ------~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
....++..+|++++|+|++++.+......|.. . .+.|+++|+||+|+.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~--------------~~~~vi~v~nK~D~~~~~~---- 124 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----P--------------ADKPIIVVLNKSDLLPDSE---- 124 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----h--------------cCCCEEEEEEchhcCCccc----
Confidence 12245779999999999999888877655543 1 2689999999999986521
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
. ..... ..++++ +||+++.|++++++.+.+.+
T Consensus 125 -------~--~~~~~-------~~~~~~---------~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 125 -------L--LSLLA-------GKPIIA---------ISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -------c--ccccC-------CCceEE---------EECCCCCCHHHHHHHHHHhh
Confidence 1 11111 246777 99999999999988877643
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=148.56 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=100.6
Q ss_pred EECCCCCCHHHHHHHHHcCCCC-CC-CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----hhhh
Q 019959 26 VVGDSGVGKTSLVNLIVKGSSF-SR-PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----YKDC 99 (333)
Q Consensus 26 ivG~~~vGKSSLl~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~~~~ 99 (333)
|+|++|||||||+++|++..+. .. ...|..... ..+.++ ....+.||||||... ...+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~--~~~~~~--------------~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNL--GVVEVP--------------DGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcc--eEEEcC--------------CCCeEEEEeccccchhhhcCCCc
Confidence 5899999999999999988642 12 222333222 223332 145689999999632 1112
Q ss_pred ---HHhhccCCcEEEEEEECCCc------ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 100 ---RSILYSQINGVIFVHDLSQR------RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 100 ---~~~~~~~ad~vIlV~D~s~~------~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
....+..+|++++|+|+++. .+++.+..|..++....... + -....+.|+++|+||+|+.... .
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~p~ivv~NK~Dl~~~~--~ 137 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLET--I---LGLLTAKPVIYVLNKIDLDDAE--E 137 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhh--H---HHHHhhCCeEEEEEchhcCchh--H
Confidence 12346789999999999998 57888888888886542100 0 0000268999999999997542 1
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
... .......... ..++++ +||+++.|++++++.+++.
T Consensus 138 ~~~----~~~~~~~~~~-------~~~~~~---------~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 138 LEE----ELVRELALEE-------GAEVVP---------ISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHH----HHHHHHhcCC-------CCCEEE---------EehhhhcCHHHHHHHHHhh
Confidence 110 0011111111 245666 9999999999988887653
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=138.53 Aligned_cols=163 Identities=20% Similarity=0.308 Sum_probs=125.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.++++|+.+|-.++||||++..|+-++. ....+|+| |..+.+++ +++++++||+.|+++.+.
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVty---------------kN~kfNvwdvGGqd~iRp 76 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTY---------------KNVKFNVWDVGGQDKIRP 76 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEe---------------eeeEEeeeeccCchhhhH
Confidence 4579999999999999999999996654 34566767 45566666 468899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
+++.||.+..++|||.|..+.+..++.+.-+..+.... ...+.|++|.+||.|+.+. +.
T Consensus 77 lWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~-----------em~~~~~LvlANkQDlp~A--~~-------- 135 (180)
T KOG0071|consen 77 LWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDR-----------EMRDAIILILANKQDLPDA--MK-------- 135 (180)
T ss_pred HHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCH-----------hhhcceEEEEecCcccccc--cC--------
Confidence 99999999999999999999988888877777766553 3458999999999999876 22
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+++.+.+++........++. .+||.+|.|+.+.+.++.+.+
T Consensus 136 -pqei~d~leLe~~r~~~W~vq--------p~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 136 -PQEIQDKLELERIRDRNWYVQ--------PSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred -HHHHHHHhccccccCCccEee--------ccccccchhHHHHHHHHHhhc
Confidence 223333344433222222322 399999999999998887654
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-18 Score=143.36 Aligned_cols=158 Identities=19% Similarity=0.172 Sum_probs=101.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh---
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY--- 96 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~--- 96 (333)
.++|+++|++|+|||||+++|++..+. ....+....+.....+..+ ...+.+|||+|....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD---------------GKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC---------------CeeEEEEECCCCccccch
Confidence 479999999999999999999987532 2222222333333344433 234789999996432
Q ss_pred -------hhh-HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 97 -------KDC-RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 97 -------~~~-~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
... ...++..+|++|+|+|++++.+..... ++..+... +.|+++|+||+|+....
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~---------------~~~~iiv~nK~Dl~~~~- 129 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILEE---------------GKALVIVVNKWDLVEKD- 129 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHhc---------------CCCEEEEEeccccCCcc-
Confidence 111 123467899999999999988866543 33333332 57999999999997652
Q ss_pred CccCcccHHHH-HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 169 TRGSSGNLVDA-ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 169 r~v~~~~~~~~-~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
... .+. ...+.+.++.. ..+++++ +||+++.|++++++.+.+
T Consensus 130 -~~~----~~~~~~~~~~~~~~~---~~~~~~~---------~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 130 -SKT----MKEFKKEIRRKLPFL---DYAPIVF---------ISALTGQGVDKLFDAIDE 172 (174)
T ss_pred -HHH----HHHHHHHHHhhcccc---cCCceEE---------EeccCCCCHHHHHHHHHH
Confidence 111 122 22232333311 1256777 999999999998887764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-18 Score=171.12 Aligned_cols=162 Identities=20% Similarity=0.213 Sum_probs=116.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
..+..+|+|+|..++|||||+++|.+..+......+++.++....+.+++ ...+.||||||++.|.
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~--------------~~~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED--------------GKMITFLDTPGHEAFT 149 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC--------------CcEEEEEECCCCcchh
Confidence 34556999999999999999999998887766655555555555555531 1268999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++...+..+|++|+|||+++...-+....| ..+.. .++|+++++||+|+.... .
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~~~---------------~~vPiIVviNKiDl~~~~---------~ 204 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEAI-SHAKA---------------ANVPIIVAINKIDKPEAN---------P 204 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHHH-HHHHH---------------cCCCEEEEEECcccccCC---------H
Confidence 9998889999999999999875433333222 22222 268999999999996432 2
Q ss_pred HHHHHHHHHcCCCC--CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLP--SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 178 ~~~~~~~~~~~~~~--~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+.+.+.+..+++.. |..++++++ +||++|.|++++++.+..
T Consensus 205 e~v~~~L~~~g~~~~~~~~~~~~v~---------iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 205 DRVKQELSEYGLVPEDWGGDTIFVP---------VSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHHHHHHHhhhhHHhcCCCceEEE---------EECCCCCChHHHHHhhhh
Confidence 44444444444321 111356777 999999999999988763
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-18 Score=165.18 Aligned_cols=163 Identities=18% Similarity=0.153 Sum_probs=107.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
...++|+|+|.+|||||||+++|++.... ....+..+.+.....+.++ + ..+.+|||+|..++.
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~-------------~--~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN-------------G--KKYLLIDTAGIRRKG 234 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC-------------C--cEEEEEECCCccccc
Confidence 34589999999999999999999976532 2223333333333444443 2 368999999964432
Q ss_pred h----------hH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 98 D----------CR-SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 98 ~----------~~-~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
. .. ..+++.+|++|+|+|+++..+..... ++..+... +.|+++|+||+|+.+.
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~---------------~~~iiiv~NK~Dl~~~ 298 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILEA---------------GKALVIVVNKWDLVKD 298 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc---------------CCcEEEEEECcccCCC
Confidence 1 11 23678999999999999988877653 44444443 5799999999999722
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
. ... .+....+...+... ..+|+++ +||++|.|++++++.+.+...
T Consensus 299 ~---~~~---~~~~~~~~~~~~~~---~~~~vi~---------~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 299 E---KTR---EEFKKELRRKLPFL---DFAPIVF---------ISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred H---HHH---HHHHHHHHHhcccC---CCCceEE---------EeCCCCCCHHHHHHHHHHHHH
Confidence 1 000 11122222223221 2357777 999999999999988887543
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=172.92 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=115.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc---CCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK---GSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
+.|+++|..++|||||+++|++ +.+..+...+++.++....+.++ .+.+.|||+||+++|..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~---------------~~~v~~iDtPGhe~f~~ 65 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP---------------DYRLGFIDVPGHEKFIS 65 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC---------------CEEEEEEECCCHHHHHH
Confidence 4689999999999999999996 34444555666777766666654 27799999999999988
Q ss_pred hHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcc
Q 019959 99 CRSILYSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~ 174 (333)
.....+.++|++|+|+|+++. .+++++. .+... ++| ++||+||+|+.+.. .+.
T Consensus 66 ~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~~l---------------gi~~iIVVlNK~Dlv~~~--~~~-- 122 (581)
T TIGR00475 66 NAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLDLL---------------GIPHTIVVITKADRVNEE--EIK-- 122 (581)
T ss_pred HHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHHHc---------------CCCeEEEEEECCCCCCHH--HHH--
Confidence 888889999999999999984 4444432 22222 567 99999999997642 110
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+.+++.++++..++. .++|+++ +||++|.|++++++.+...+
T Consensus 123 ~~~~ei~~~l~~~~~~---~~~~ii~---------vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 123 RTEMFMKQILNSYIFL---KNAKIFK---------TSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred HHHHHHHHHHHHhCCC---CCCcEEE---------EeCCCCCCchhHHHHHHHHH
Confidence 1124556666655432 1367777 99999999999988776544
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.9e-18 Score=136.90 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=123.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh-h
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY-K 97 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~-~ 97 (333)
..||+|+|-.+||||+++..++.+... .++.+|+.. ++.-.++. +.+..-.+.|+||.|...+ .
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet------------~rgarE~l~lyDTaGlq~~~~ 75 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVET------------DRGAREQLRLYDTAGLQGGQQ 75 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeec------------CCChhheEEEeecccccCchh
Confidence 359999999999999999999865433 355667654 33444433 3355667999999997777 5
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+-+.|+.-+|++++|||..+++||+.+...-.+|.++.. ...+||+|++||+|+.+. ++++.
T Consensus 76 eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~Kd-----------KKEvpiVVLaN~rdr~~p--~~vd~---- 138 (198)
T KOG3883|consen 76 ELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKD-----------KKEVPIVVLANKRDRAEP--REVDM---- 138 (198)
T ss_pred hhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccc-----------cccccEEEEechhhcccc--hhcCH----
Confidence 6677789999999999999999999998766666666532 358999999999999865 77875
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+.+..||+.-.. .++| ++|++...+-+.|..+..
T Consensus 139 d~A~~Wa~rEkv-------kl~e---------Vta~dR~sL~epf~~l~~ 172 (198)
T KOG3883|consen 139 DVAQIWAKREKV-------KLWE---------VTAMDRPSLYEPFTYLAS 172 (198)
T ss_pred HHHHHHHhhhhe-------eEEE---------EEeccchhhhhHHHHHHH
Confidence 999999998764 4777 999998655555555443
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-18 Score=172.36 Aligned_cols=165 Identities=19% Similarity=0.253 Sum_probs=112.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+...|+|+|..++|||||+++|.+..+......+++.++....+.+. .++..+.+.||||||++.|..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~-----------~~~~~~kItfiDTPGhe~F~~ 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFE-----------YKDENQKIVFLDTPGHEAFSS 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEE-----------ecCCceEEEEEECCcHHHHHH
Confidence 345699999999999999999999887765444333333332233221 013457899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|+|+++....+....|. .+.. .++|+|||+||+|+.... .+
T Consensus 311 mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~-~~k~---------------~~iPiIVViNKiDl~~~~---------~e 365 (742)
T CHL00189 311 MRSRGANVTDIAILIIAADDGVKPQTIEAIN-YIQA---------------ANVPIIVAINKIDKANAN---------TE 365 (742)
T ss_pred HHHHHHHHCCEEEEEEECcCCCChhhHHHHH-HHHh---------------cCceEEEEEECCCccccC---------HH
Confidence 9998999999999999998854333332222 2222 268999999999997532 12
Q ss_pred HHHHHHHHcCCCC--CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLP--SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 179 ~~~~~~~~~~~~~--~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+.+....+++.+ +...+|+++ +||++|.|++++++.+...
T Consensus 366 ~v~~eL~~~~ll~e~~g~~vpvv~---------VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 366 RIKQQLAKYNLIPEKWGGDTPMIP---------ISASQGTNIDKLLETILLL 408 (742)
T ss_pred HHHHHHHHhccchHhhCCCceEEE---------EECCCCCCHHHHHHhhhhh
Confidence 2322222222211 111257777 9999999999999887664
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=164.13 Aligned_cols=147 Identities=19% Similarity=0.169 Sum_probs=102.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----- 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----- 95 (333)
.+|+|+|.+|||||||+|+|++.... ....+.++.+.....+.++ .+.+.+|||+|.+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~---------------~~~~~liDT~G~~~~~~~~ 66 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL---------------GREFILIDTGGIEPDDDGF 66 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC---------------CcEEEEEECCCCCCcchhH
Confidence 48999999999999999999987642 2333334445555555553 26799999999876
Q ss_pred ---hhhhHHhhccCCcEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 96 ---YKDCRSILYSQINGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 96 ---~~~~~~~~~~~ad~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+......++..+|++|+|+|+++..+... +..|+.. . +.|+++|+||+|+....
T Consensus 67 ~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~---~---------------~~piilv~NK~D~~~~~--- 125 (435)
T PRK00093 67 EKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK---S---------------NKPVILVVNKVDGPDEE--- 125 (435)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c---------------CCcEEEEEECccCccch---
Confidence 23334456789999999999998655432 3344432 2 57999999999975421
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+...++ ..+|+. .+++ +||++|.|++++++.+..
T Consensus 126 -------~~~~~~-~~lg~~------~~~~---------iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 -------ADAYEF-YSLGLG------EPYP---------ISAEHGRGIGDLLDAILE 159 (435)
T ss_pred -------hhHHHH-HhcCCC------CCEE---------EEeeCCCCHHHHHHHHHh
Confidence 222232 344532 2455 999999999998888876
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=171.22 Aligned_cols=161 Identities=20% Similarity=0.213 Sum_probs=112.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
..+...|+|+|..++|||||+++|.+..+......+++.+.....+.++ ...+.||||||++.|.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~---------------~~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN---------------GGKITFLDTPGHEAFT 351 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC---------------CEEEEEEECCCCccch
Confidence 3455689999999999999999999887765554444444444445443 3579999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++...+..+|++|+|||+++...-+....|. .+.. .++|+|||+||+|+...+.
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i~-~a~~---------------~~vPiIVviNKiDl~~a~~--------- 406 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAIN-HAKA---------------AGVPIIVAINKIDKPGANP--------- 406 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHH-HHHh---------------cCCcEEEEEECccccccCH---------
Confidence 99998899999999999999854322222222 2222 2689999999999965321
Q ss_pred HHHHHHHHHcCCCC--CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLP--SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 178 ~~~~~~~~~~~~~~--~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+.........++.. +..++++++ +||++|.|++++++.+..
T Consensus 407 e~V~~eL~~~~~~~e~~g~~vp~vp---------vSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 407 DRVKQELSEYGLVPEEWGGDTIFVP---------VSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHHHHHHHHhcccHHHhCCCceEEE---------EeCCCCCCchHHHHhhhh
Confidence 22222112222211 112367888 999999999999988875
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=156.49 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=121.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC---------c
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG---------H 93 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G---------~ 93 (333)
.|+++|++|+|||||+|+|++.........+.+++.+.+.+.+.+ ...+.+.||.| .
T Consensus 194 ~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~--------------g~~vlLtDTVGFI~~LP~~LV 259 (411)
T COG2262 194 LVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD--------------GRKVLLTDTVGFIRDLPHPLV 259 (411)
T ss_pred eEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC--------------CceEEEecCccCcccCChHHH
Confidence 999999999999999999998888778888888889999998862 45688999999 4
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+.|+++... ...+|++++|+|++++...+++......+.+.+. .++|+|+|.||+|+..+.
T Consensus 260 ~AFksTLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~------------~~~p~i~v~NKiD~~~~~------ 320 (411)
T COG2262 260 EAFKSTLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGA------------DEIPIILVLNKIDLLEDE------ 320 (411)
T ss_pred HHHHHHHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCC------------CCCCEEEEEecccccCch------
Confidence 567777665 5689999999999999888888777777777643 368999999999987652
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+....+..... .. +.+||++|.|++.+.+.|.+.+...
T Consensus 321 ----~~~~~~~~~~~--------~~---------v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 321 ----EILAELERGSP--------NP---------VFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred ----hhhhhhhhcCC--------Ce---------EEEEeccCcCHHHHHHHHHHHhhhc
Confidence 10111111111 12 2299999999998888888877644
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=138.00 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=98.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh---
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK--- 97 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~--- 97 (333)
..+|+++|.+|+|||||+++|++..+................. +. ...+.+.+|||+|.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~liDtpG~~~~~~~~ 68 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YT-------------DDDAQIIFVDTPGIHKPKKKL 68 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EE-------------cCCeEEEEEECCCCCcchHHH
Confidence 4689999999999999999999875432211111111111111 11 234678999999964332
Q ss_pred -----hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 98 -----DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 98 -----~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
......+..+|++++|+|+++..+.. ...+...+... +.|+++|+||+|+.... ..
T Consensus 69 ~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~---------------~~~~iiv~nK~Dl~~~~--~~- 129 (168)
T cd04163 69 GERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS---------------KTPVILVLNKIDLVKDK--ED- 129 (168)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh---------------CCCEEEEEEchhccccH--HH-
Confidence 22334577899999999999873211 22333444333 47999999999997431 10
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.+....+....+. .++++ +|++++.|++++++.+.+.
T Consensus 130 ---~~~~~~~~~~~~~~------~~~~~---------~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 130 ---LLPLLEKLKELGPF------AEIFP---------ISALKGENVDELLEEIVKY 167 (168)
T ss_pred ---HHHHHHHHHhccCC------CceEE---------EEeccCCChHHHHHHHHhh
Confidence 11223333333321 45666 9999999999988887654
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=147.58 Aligned_cols=122 Identities=21% Similarity=0.287 Sum_probs=90.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
+|+|+|++|||||||+++|+++.+...+..+ ...+. .+... ..+..+.+.|||+||+++++.....
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~--~~~~~-----------~~~~~~~~~l~D~pG~~~~~~~~~~ 67 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVA--TFILN-----------SEGKGKKFRLVDVPGHPKLRDKLLE 67 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecce--EEEee-----------cCCCCceEEEEECCCCHHHHHHHHH
Confidence 6899999999999999999998776655433 22222 22221 1134567999999999999998888
Q ss_pred hccCC-cEEEEEEECCCc-ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 103 LYSQI-NGVIFVHDLSQR-RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 103 ~~~~a-d~vIlV~D~s~~-~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
+++.+ +++|+|+|+++. .++..+..|+..+....... ...+|++||+||+|+....
T Consensus 68 ~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~---------~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 68 TLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKV---------KNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhc---------cCCCCEEEEecchhhcccC
Confidence 89998 999999999998 67777777766554321100 1368999999999997653
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=169.33 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=107.7
Q ss_pred CCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh------HH
Q 019959 28 GDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC------RS 101 (333)
Q Consensus 28 G~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~------~~ 101 (333)
|++|||||||+|++++..+...+.++.+.+.....+.++ ...+++|||||++++... ..
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~---------------~~~i~lvDtPG~~~~~~~s~~e~v~~ 65 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ---------------GEDIEIVDLPGIYSLTTFSLEEEVAR 65 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC---------------CeEEEEEECCCccccCccchHHHHHH
Confidence 899999999999999887755566666666666666654 245899999998776543 33
Q ss_pred hhc--cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 102 ILY--SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 102 ~~~--~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
.++ ..+|++++|+|.++.+. ...+..++.+. ++|+++|+||+|+.++. .+. .+
T Consensus 66 ~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~~---------------~~PiIIVlNK~Dl~~~~--~i~-----~d 120 (591)
T TIGR00437 66 DYLLNEKPDLVVNVVDASNLER---NLYLTLQLLEL---------------GIPMILALNLVDEAEKK--GIR-----ID 120 (591)
T ss_pred HHHhhcCCCEEEEEecCCcchh---hHHHHHHHHhc---------------CCCEEEEEehhHHHHhC--CCh-----hh
Confidence 333 37999999999998543 22344444433 68999999999997542 222 34
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+++++.+| +|+++ +||++|.|++++++.+.+.+
T Consensus 121 ~~~L~~~lg-------~pvv~---------tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 121 EEKLEERLG-------VPVVP---------TSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHHHHHHcC-------CCEEE---------EECCCCCCHHHHHHHHHHHh
Confidence 677888777 57888 99999999999999987653
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=161.75 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=103.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc--------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH-------- 93 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~-------- 93 (333)
+|+|||.+|||||||+|+|++.... ....+.++.+.....+.++ ...+.||||+|.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~---------------~~~~~liDTpG~~~~~~~~~ 65 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG---------------GREFILIDTGGIEEDDDGLD 65 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC---------------CeEEEEEECCCCCCcchhHH
Confidence 5899999999999999999987532 2233333444444455443 345999999995
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+.+......++..+|++|+|+|+++..+.... .+...+.+. +.|+++|+||+|+....
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~~---------------~~piilVvNK~D~~~~~------ 123 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDE-EIAKWLRKS---------------GKPVILVANKIDGKKED------ 123 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHHh---------------CCCEEEEEECccCCccc------
Confidence 44555566678899999999999986554432 222333333 57999999999987542
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
....+ ...+|+. ++++ +||+.|.|++++++.+.+.+
T Consensus 124 ----~~~~~-~~~lg~~------~~~~---------vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 124 ----AVAAE-FYSLGFG------EPIP---------ISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred ----ccHHH-HHhcCCC------CeEE---------EeCCcCCChHHHHHHHHHhc
Confidence 11122 2345543 3555 99999999999988887654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=161.87 Aligned_cols=172 Identities=17% Similarity=0.127 Sum_probs=108.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch----hhh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE----RYK 97 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e----~~~ 97 (333)
.+|+|||.+|||||||+++|++........+..+++...-.+.+. ...+.||||||.. ...
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~---------------~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG---------------DTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC---------------CeEEEEEECCCCccccchhh
Confidence 489999999999999999999765432222222333334444443 3569999999942 222
Q ss_pred hhHH---hhccCCcEEEEEEECCCc----ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 98 DCRS---ILYSQINGVIFVHDLSQR----RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 98 ~~~~---~~~~~ad~vIlV~D~s~~----~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
.+.. ..+..+|++|+|+|+++. +.++.+..|..++..+...... ..+-....+.|+|||+||+|+.+.. .
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~-~~~~~~l~~kP~IVVlNKiDL~da~--e 301 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDG-DLGLGDLAERPRLVVLNKIDVPDAR--E 301 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccc-cchhhhhcCCCEEEEEECccchhhH--H
Confidence 2222 235679999999999863 4566677777777655310000 0000011368999999999997541 1
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+ .+.........+ +++++ +||+++.|+++++..|.+.+...
T Consensus 302 l-----~e~l~~~l~~~g-------~~Vf~---------ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 302 L-----AEFVRPELEARG-------WPVFE---------VSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred H-----HHHHHHHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHhh
Confidence 1 122222223333 45777 99999999999999998877553
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-17 Score=169.49 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=108.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch----
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE---- 94 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e---- 94 (333)
..+||+|+|.+|||||||+|+|++.... ....++.+.+.....+.++ +. .+.||||+|..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~-------------~~--~~~liDTaG~~~~~~ 513 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEID-------------GE--DWLFIDTAGIKRRQH 513 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEEC-------------CC--EEEEEECCCcccCcc
Confidence 4579999999999999999999988642 2333333455555555554 22 36799999942
Q ss_pred ------hhhhhH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 95 ------RYKDCR-SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 95 ------~~~~~~-~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
.|..+. ..+++.+|++|+|+|+++..+++.+. ++..+... +.|++||+||+|+.+..
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~---------------~~piIiV~NK~DL~~~~ 577 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVDA---------------GRALVLVFNKWDLMDEF 577 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc---------------CCCEEEEEEchhcCChh
Confidence 233332 23478999999999999998888775 44444443 58999999999997542
Q ss_pred CCccCcccHHHHHH-HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAAR-QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 ~r~v~~~~~~~~~~-~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
. .+... .+...+.... ..+.++ +||++|.|++++++.+.+.+.
T Consensus 578 ~--------~~~~~~~~~~~l~~~~---~~~ii~---------iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 578 R--------RQRLERLWKTEFDRVT---WARRVN---------LSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred H--------HHHHHHHHHHhccCCC---CCCEEE---------EECCCCCCHHHHHHHHHHHHH
Confidence 1 01111 2222222111 134455 999999999999999887654
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-17 Score=156.81 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=110.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY------ 96 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~------ 96 (333)
.|+|||.+|||||||+|+|++........+..+.....-.+.+. ....+.|+||||..+-
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~--------------~~~~i~~vDtPGi~~~a~~~~~ 226 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD--------------DERSFVVADIPGLIEGASEGAG 226 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC--------------CCcEEEEEeCCCccccccchhh
Confidence 79999999999999999999765433322222233333334332 2245899999995321
Q ss_pred -hhhHHhhccCCcEEEEEEECC---CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 97 -KDCRSILYSQINGVIFVHDLS---QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 97 -~~~~~~~~~~ad~vIlV~D~s---~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
.......+..+|++++|+|++ +.+.++.+..|+.++..... ...+.|++||+||+|+.... .
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~----------~L~~kP~IlVlNKiDl~~~~--e-- 292 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP----------KLAEKPRWLVFNKIDLLDEE--E-- 292 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh----------hhcCCCEEEEEeCCccCChH--H--
Confidence 111112477899999999998 55678888888888876531 11258999999999997541 1
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.+..+.+.+.++.. .+++. +||+++.|++++++.+.+.+-.
T Consensus 293 ---l~~~l~~l~~~~~~~-----~~Vi~---------ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 293 ---AEERAKAIVEALGWE-----GPVYL---------ISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred ---HHHHHHHHHHHhCCC-----CCEEE---------EECCCCcCHHHHHHHHHHHhhh
Confidence 124445555544421 24555 9999999999999988876644
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=145.46 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=98.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCcccceeEEEEEEEeCCC------CC-----CCCccC-------CCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS---FSRPSQTIGCTVGVKHITYGSS------GS-----SSNSIK-------GDSE 80 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~------~~-----~~~~i~-------~~~~ 80 (333)
++|+|+|..|+|||||+.++.+... ..+....+.+......+.+... .+ ..+... ....
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975411 1111111111111111111000 00 000000 0111
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCc----ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEE
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR----RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 156 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~----~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Piiv 156 (333)
....+.||||||+++|.......+..+|++|+|+|++++ .+++.+..| .... ..|++|
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~~--------------~~~iii 142 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIMG--------------LKHIII 142 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHcC--------------CCcEEE
Confidence 236799999999999888777778889999999999974 233333322 2221 247999
Q ss_pred EeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 157 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 157 VgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
|+||+|+....... +..+.+++++..... ..+++++ +||++|.|++++++.+.+
T Consensus 143 vvNK~Dl~~~~~~~----~~~~~i~~~~~~~~~----~~~~i~~---------vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 143 VQNKIDLVKEEQAL----ENYEQIKKFVKGTIA----ENAPIIP---------ISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred EEEchhccCHHHHH----HHHHHHHHHHhcccc----CCCcEEE---------EeCCCCCCHHHHHHHHHH
Confidence 99999997531100 111333333333221 1256777 999999999888877765
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-18 Score=140.09 Aligned_cols=163 Identities=19% Similarity=0.271 Sum_probs=124.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCC---C----CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGS---S----FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~---~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
.+-|+|+|..++|||||+.+..... + ...-.+|+|+......+. ...+.+||..||
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~-----------------~~~l~fwdlgGQ 79 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC-----------------NAPLSFWDLGGQ 79 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec-----------------cceeEEEEcCCh
Confidence 4689999999999999999886431 1 123456777666555543 346999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+..++++..||..+|++|+|+|+++++.|+....-+..+..+.. .+++|+++.+||.|+.+.. .
T Consensus 80 e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~-----------leg~p~L~lankqd~q~~~----~- 143 (197)
T KOG0076|consen 80 ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEK-----------LEGAPVLVLANKQDLQNAM----E- 143 (197)
T ss_pred HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHH-----------hcCCchhhhcchhhhhhhh----h-
Confidence 99999999999999999999999999999988777777665533 2589999999999998752 1
Q ss_pred ccHHHHHHHH---HHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQW---VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 174 ~~~~~~~~~~---~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++.... ++..+-. ++++.. |||.+|.||++.++++...+.++
T Consensus 144 ---~~El~~~~~~~e~~~~r----d~~~~p---------vSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 144 ---AAELDGVFGLAELIPRR----DNPFQP---------VSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ---HHHHHHHhhhhhhcCCc----cCcccc---------chhhhcccHHHHHHHHHHHHhhc
Confidence 1222222 2222221 467777 99999999999999999888766
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-17 Score=134.66 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=100.6
Q ss_pred EECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh------
Q 019959 26 VVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD------ 98 (333)
Q Consensus 26 ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~------ 98 (333)
|+|..|+|||||++++++.... ................... ....+.+|||+|...+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dt~g~~~~~~~~~~~~ 66 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG--------------PLGPVVLIDTPGIDEAGGLGRERE 66 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec--------------CCCcEEEEECCCCCccccchhhHH
Confidence 5899999999999999976544 2222222222223333321 245699999999765432
Q ss_pred -hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 99 -CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 99 -~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
....++..+|++++|+|+++..+..... |....... +.|+++|+||+|+....
T Consensus 67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~~---------------~~~~ivv~nK~D~~~~~---------- 120 (163)
T cd00880 67 ELARRVLERADLILFVVDADLRADEEEEK-LLELLRER---------------GKPVLLVLNKIDLLPEE---------- 120 (163)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHhc---------------CCeEEEEEEccccCChh----------
Confidence 3334688999999999999998877665 44444433 68999999999998652
Q ss_pred HHHHHHHH-HcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 178 DAARQWVE-KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 178 ~~~~~~~~-~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
....+.. ..........+++++ +||+++.|++++++.+.+.
T Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~---------~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 121 -EEEELLELRLLILLLLLGLPVIA---------VSALTGEGIDELREALIEA 162 (163)
T ss_pred -hHHHHHHHHHhhcccccCCceEE---------EeeeccCCHHHHHHHHHhh
Confidence 1111110 000111112366777 9999999999888887654
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=156.99 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=106.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
...++|+|+|.+|||||||+++|++.. ......+....+.....+.++ ...+.+|||+|..+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~---------------~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD---------------GQKYTLIDTAGIRRKG 235 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC---------------CeeEEEEECCCCCCCc
Confidence 356899999999999999999999764 223333333334333344332 34578999999532
Q ss_pred --------hhhhH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 96 --------YKDCR-SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 96 --------~~~~~-~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
|.... ..++..+|++|+|+|+++..+..... ++..+... ..|+++|+||+|+.+.
T Consensus 236 ~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~---------------~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 236 KVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALEA---------------GRALVIVVNKWDLVDE 299 (435)
T ss_pred chhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---------------CCcEEEEEECccCCCH
Confidence 22222 23578999999999999988877653 34444443 5799999999999743
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
. . . .+....+...+... ..+|+++ +||++|.|++++++.+.+..
T Consensus 300 ~--~--~---~~~~~~~~~~l~~~---~~~~i~~---------~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 300 K--T--M---EEFKKELRRRLPFL---DYAPIVF---------ISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred H--H--H---HHHHHHHHHhcccc---cCCCEEE---------EeCCCCCCHHHHHHHHHHHH
Confidence 1 0 0 12222222222211 2356777 99999999999998887654
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-17 Score=145.77 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=100.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh-----
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK----- 97 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~----- 97 (333)
+|+|+|.+|||||||+++|++........+..+.+.....+.++ ...+++|||||..+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~---------------~~~i~l~DtpG~~~~~~~~~~ 66 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK---------------GAKIQLLDLPGIIEGAADGKG 66 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC---------------CeEEEEEECCCcccccccchh
Confidence 79999999999999999999775322222222233334444443 3579999999964322
Q ss_pred --hhHHhhccCCcEEEEEEECCCccc-HHHHHHHHHHHHhcCCC-CCCCC--------CCC-------------------
Q 019959 98 --DCRSILYSQINGVIFVHDLSQRRT-KTSLQKWAVEIATSGTF-SAPLA--------SGG------------------- 146 (333)
Q Consensus 98 --~~~~~~~~~ad~vIlV~D~s~~~S-~~~l~~~~~~i~~~~~~-~~~~~--------~~~------------------- 146 (333)
.....+++.+|++++|+|+++... .+.+...+.. .+.. ..+.. .++
T Consensus 67 ~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~---~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~ 143 (233)
T cd01896 67 RGRQVIAVARTADLILMVLDATKPEGHREILERELEG---VGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKA 143 (233)
T ss_pred HHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHH---cCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHH
Confidence 122346889999999999988652 3333222221 1110 00000 000
Q ss_pred ----------------------------CCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCc
Q 019959 147 ----------------------------PGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPL 198 (333)
Q Consensus 147 ----------------------------~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 198 (333)
.....+|+++|+||+|+... +++..+++. .++
T Consensus 144 ~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----------~~~~~~~~~---------~~~ 203 (233)
T cd01896 144 ILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----------EELDLLARQ---------PNS 203 (233)
T ss_pred HHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----------HHHHHHhcC---------CCE
Confidence 00124799999999999753 445544432 235
Q ss_pred cccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 199 TESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 199 ~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++ +||++|.|++++++.+++.+
T Consensus 204 ~~---------~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 204 VV---------ISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EE---------EcCCCCCCHHHHHHHHHHHh
Confidence 66 99999999999999998765
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.8e-17 Score=166.74 Aligned_cols=154 Identities=23% Similarity=0.175 Sum_probs=103.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh---
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER--- 95 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~--- 95 (333)
...+|+|+|.+|||||||+|+|++... .....++++.+.......++ ...+.+|||+|.+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~---------------~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA---------------GTDFKLVDTGGWEADVE 338 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC---------------CEEEEEEeCCCcCCCCc
Confidence 346899999999999999999998754 22333333334333333332 35689999999653
Q ss_pred -----hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 96 -----YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 96 -----~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+......++..+|++|+|+|+++.-.... ..|...+... +.|+|+|+||+|+....
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~~---------------~~pvIlV~NK~D~~~~~--- 399 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRRA---------------GKPVVLAVNKIDDQASE--- 399 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHhc---------------CCCEEEEEECcccccch---
Confidence 34445567889999999999987533222 2455555443 68999999999986431
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
....++ ..+++. . .++ +||++|.|++++++.+++.+.
T Consensus 400 -------~~~~~~-~~lg~~-----~-~~~---------iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 400 -------YDAAEF-WKLGLG-----E-PYP---------ISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred -------hhHHHH-HHcCCC-----C-eEE---------EECCCCCCchHHHHHHHHhcc
Confidence 112222 123432 1 245 999999999999998887653
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-17 Score=166.84 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=110.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh-
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC- 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~- 99 (333)
.++|+++|.+|||||||+|+|++........ .|.++..+...+. .....+.+|||||...+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~-------------~~~~~i~lvDtPG~ysl~~~~ 67 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFS-------------TTDHQVTLVDLPGTYSLTTIS 67 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEE-------------cCceEEEEEECCCcccccccc
Confidence 5799999999999999999999876543333 3455555544443 34567999999998665321
Q ss_pred ---------HHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 100 ---------RSIL--YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 100 ---------~~~~--~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
...+ ...+|++|+|+|+++.+... .|..++.+. ++|+++|+||+|+.++.
T Consensus 68 ~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~---------------giPvIvVlNK~Dl~~~~- 128 (772)
T PRK09554 68 SQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLEL---------------GIPCIVALNMLDIAEKQ- 128 (772)
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecCCcchhhH---HHHHHHHHc---------------CCCEEEEEEchhhhhcc-
Confidence 1223 24899999999999865432 355556554 58999999999997542
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+. .+.+++.+.+| +|+++ +||++|.|++++.+.+.+.
T Consensus 129 -~i~-----id~~~L~~~LG-------~pVvp---------iSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 129 -NIR-----IDIDALSARLG-------CPVIP---------LVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred -CcH-----HHHHHHHHHhC-------CCEEE---------EEeecCCCHHHHHHHHHHh
Confidence 222 45677888887 57888 9999999998888777654
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=148.52 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=98.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh--
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFS--RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY-- 96 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~-- 96 (333)
.-.|+|+|.+|||||||+|+|++..+.. ....|.. +. ...+.. .....+.+|||||....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~-~~-i~~i~~--------------~~~~qi~~iDTPG~~~~~~ 68 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-HR-IRGIVT--------------EDDAQIIFVDTPGIHKPKR 68 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc-cc-EEEEEE--------------cCCceEEEEECCCCCCchh
Confidence 3479999999999999999999876532 1222211 11 111111 12367999999995332
Q ss_pred ------hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 97 ------KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 97 ------~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
.......+..+|++++|+|+++..+.. ....+..+... +.|+++|+||+|+.... .
T Consensus 69 ~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~-~~~i~~~l~~~---------------~~pvilVlNKiDl~~~~--~ 130 (292)
T PRK00089 69 ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPG-DEFILEKLKKV---------------KTPVILVLNKIDLVKDK--E 130 (292)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChh-HHHHHHHHhhc---------------CCCEEEEEECCcCCCCH--H
Confidence 222334577999999999999843221 12223333322 58999999999997431 1
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++.+....+.+..+. .++++ +||+++.|++++++.+.+.+
T Consensus 131 ----~l~~~~~~l~~~~~~------~~i~~---------iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 131 ----ELLPLLEELSELMDF------AEIVP---------ISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred ----HHHHHHHHHHhhCCC------CeEEE---------ecCCCCCCHHHHHHHHHHhC
Confidence 112445555554442 34666 99999999988888776643
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=160.08 Aligned_cols=163 Identities=15% Similarity=0.191 Sum_probs=113.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC-----CC------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEE
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGS--SFS-----RP------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELW 88 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~--~~~-----~~------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~ 88 (333)
-+|+|+|..++|||||+.+|+... +.. .. ..+.|.++....+.+.- ...++..+.++||
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~--------~~~dg~~~~lnLi 79 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNY--------KAKDGETYILNLI 79 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEE--------EccCCCcEEEEEE
Confidence 389999999999999999998531 111 00 11234444433332210 0012567899999
Q ss_pred eCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 89 DISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 89 Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
||||+++|...+..++..+|++|+|+|+++....+....|.... .. ++|+++|+||+|+.....
T Consensus 80 DTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~~---------------~lpiIvViNKiDl~~a~~ 143 (600)
T PRK05433 80 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-EN---------------DLEIIPVLNKIDLPAADP 143 (600)
T ss_pred ECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-HC---------------CCCEEEEEECCCCCcccH
Confidence 99999999998889999999999999999987777766665433 22 579999999999864321
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+...++.+.+++.. ..+++ +||++|.|++++++.+.+.+
T Consensus 144 --------~~v~~ei~~~lg~~~----~~vi~---------iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 144 --------ERVKQEIEDVIGIDA----SDAVL---------VSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred --------HHHHHHHHHHhCCCc----ceEEE---------EecCCCCCHHHHHHHHHHhC
Confidence 123345555555421 12555 99999999999888887654
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=158.72 Aligned_cols=123 Identities=25% Similarity=0.272 Sum_probs=80.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC----CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRP----SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
-|+|+|..++|||||+++|++..+.... .+++|..+..........+....... .+.....+.||||||++.|..
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~-v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFK-IRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccc-cccccCcEEEEECCCcHhHHH
Confidence 6999999999999999999988775433 33444433221110000000000000 001112388999999999999
Q ss_pred hHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 99 CRSILYSQINGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~---~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
++..++..+|++|+|||+++ +.+++.+..+ ... ++|+++|+||+|+..
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~~---------------~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----RMY---------------KTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HHc---------------CCCEEEEEECCCccc
Confidence 99999999999999999998 4445444322 222 589999999999974
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=133.70 Aligned_cols=154 Identities=19% Similarity=0.300 Sum_probs=100.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch--------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE-------- 94 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e-------- 94 (333)
+|+++|++|||||||++.++++.+.....++.+.+.....+..+ + .+.+|||+|..
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------~---~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-------------D---KFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-------------C---eEEEecCCCccccccCHHH
Confidence 48999999999999999999776666666666665555544432 1 69999999932
Q ss_pred --hhhhhHHhhcc---CCcEEEEEEECCCcccH--HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 95 --RYKDCRSILYS---QINGVIFVHDLSQRRTK--TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 95 --~~~~~~~~~~~---~ad~vIlV~D~s~~~S~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
.+......++. .++++++|+|.++..+. ..+..|+... +.|+++|+||+|+....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------------------~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------------------GIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------------------CCCEEEEEEchhcCChH
Confidence 34444444444 45789999999876432 2334454432 47999999999996432
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+... ......+.+.... ..++++ +||+++.|++++++.+.+.
T Consensus 127 ~~~~~----~~~~~~~l~~~~~-----~~~~~~---------~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 127 ELAKA----LKEIKKELKLFEI-----DPPIIL---------FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHH----HHHHHHHHHhccC-----CCceEE---------EecCCCCCHHHHHHHHHHh
Confidence 11100 1222222221111 245666 9999999999998888764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-17 Score=130.28 Aligned_cols=165 Identities=19% Similarity=0.315 Sum_probs=125.8
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
++..+++||.++|-.++|||||+..|..... ..-.+|.| |..+.+.++ ..+.+++||..|+..
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~--------------g~f~LnvwDiGGqr~ 74 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYD--------------GTFHLNVWDIGGQRG 74 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeec--------------CcEEEEEEecCCccc
Confidence 3457789999999999999999999976543 44456666 556777764 579999999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
.+..+..||...|++|+|+|.+|...|+++..-+.++.+..+. ..+|+++..||.|+.-.
T Consensus 75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl-----------~~vpvlIfankQdllta--------- 134 (185)
T KOG0074|consen 75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKL-----------AEVPVLIFANKQDLLTA--------- 134 (185)
T ss_pred cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhh-----------hccceeehhhhhHHHhh---------
Confidence 9999999999999999999999999999998877777666442 37999999999998754
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
..+++.+.++++.........++ +|||.++.|+.+..+.+..
T Consensus 135 --a~~eeia~klnl~~lrdRswhIq--------~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 135 --AKVEEIALKLNLAGLRDRSWHIQ--------ECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred --cchHHHHHhcchhhhhhceEEee--------eCccccccCccCcchhhhc
Confidence 22344455554432222222232 2999999998888877754
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.9e-17 Score=159.46 Aligned_cols=190 Identities=19% Similarity=0.223 Sum_probs=131.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-------
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH------- 93 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~------- 93 (333)
..+|+++|+||||||||+|++++......+.+.++++...-.+.+. ...+++.|+||.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~---------------~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK---------------GHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec---------------CceEEEEeCCCcCCCCCCC
Confidence 4579999999999999999999887766666655555555555443 345899999993
Q ss_pred hhhhhhHHhhc-cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 94 ERYKDCRSILY-SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 94 e~~~~~~~~~~-~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
++-.-.++..+ ...|++|.|.|++|.+..-.+.-.+.+ . ++|++++.|++|...+.+.+++
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE---~---------------g~p~ilaLNm~D~A~~~Gi~ID 129 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLE---L---------------GIPMILALNMIDEAKKRGIRID 129 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHH---c---------------CCCeEEEeccHhhHHhcCCccc
Confidence 11122222223 367999999999998765555444333 3 6899999999999988666555
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCC
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMPAPNPWSISPTHK 252 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (333)
.+.+.+.+| +|.++ +||++|.|+++++.++.+....+.. .-..++..++++
T Consensus 130 -------~~~L~~~LG-------vPVv~---------tvA~~g~G~~~l~~~i~~~~~~~~~------~~~~~y~~~ie~ 180 (653)
T COG0370 130 -------IEKLSKLLG-------VPVVP---------TVAKRGEGLEELKRAIIELAESKTT------PREVDYGEEIEE 180 (653)
T ss_pred -------HHHHHHHhC-------CCEEE---------EEeecCCCHHHHHHHHHHhcccccc------ccccccchHHHH
Confidence 677888888 68988 9999999988887777654322211 233455666666
Q ss_pred CcccccccCCCCccccc-cCCC
Q 019959 253 PIQRLDENSSDDDKFYS-SGYS 273 (333)
Q Consensus 253 ~~~~~~~~~~~~~~~~~-~~l~ 273 (333)
.+..++ ...+..++.. +.|.
T Consensus 181 ~i~~l~-~~~~~~r~lai~lL~ 201 (653)
T COG0370 181 EIKELE-ALSEDPRWLAIKLLE 201 (653)
T ss_pred HHHHHH-hhcchhHHHHHHHhc
Confidence 666666 4433334443 4444
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-17 Score=140.82 Aligned_cols=166 Identities=17% Similarity=0.219 Sum_probs=109.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CcccceeEEEEEEEeCCCCCCCCccCCCCCc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRP------------------SQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (333)
..++|+|+|..++|||||+.+|+........ ...+..+.....+.. ...
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~-------------~~~ 68 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK-------------NEN 68 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB-------------TES
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc-------------ccc
Confidence 3568999999999999999999944321110 011122222233321 135
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
...+.|+||||+.+|.......+..+|++|+|+|+.+...... ...+..+... ++|+|+|.||+
T Consensus 69 ~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---------------~~p~ivvlNK~ 132 (188)
T PF00009_consen 69 NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---------------GIPIIVVLNKM 132 (188)
T ss_dssp SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---------------T-SEEEEEETC
T ss_pred ccceeecccccccceeecccceecccccceeeeeccccccccc-cccccccccc---------------ccceEEeeeec
Confidence 6789999999999998888888999999999999998755433 3334444444 68999999999
Q ss_pred CCCCccCCccCcccHHHHHH-HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAAR-QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~-~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
|+...+-.. +.++.. .+.+..+.... ..+|++. +||++|.|++++++.+.+.+
T Consensus 133 D~~~~~~~~-----~~~~~~~~l~~~~~~~~~-~~~~vi~---------~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 133 DLIEKELEE-----IIEEIKEKLLKEYGENGE-EIVPVIP---------ISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TSSHHHHHH-----HHHHHHHHHHHHTTSTTT-STEEEEE---------EBTTTTBTHHHHHHHHHHHS
T ss_pred cchhhhHHH-----HHHHHHHHhccccccCcc-ccceEEE---------EecCCCCCHHHHHHHHHHhC
Confidence 998331111 112222 44444544311 1257777 99999999998888887653
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=140.57 Aligned_cols=153 Identities=19% Similarity=0.181 Sum_probs=95.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCC------------------------------CCcccceeEEEEEEEeCCCCCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS-SFSR------------------------------PSQTIGCTVGVKHITYGSSGSS 71 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~-~~~~------------------------------~~~t~~~~~~~~~~~~~~~~~~ 71 (333)
+|+|+|.+|+|||||+++|+... .+.. ....++.+.....+..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~------ 74 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST------ 74 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec------
Confidence 58999999999999999998432 1110 0011122222222222
Q ss_pred CCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019959 72 SNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 72 ~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
....+.||||||+++|.......+..+|++|+|+|+++...-... .+...+.... .
T Consensus 75 ---------~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~~~--------------~ 130 (208)
T cd04166 75 ---------PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSLLG--------------I 130 (208)
T ss_pred ---------CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHHcC--------------C
Confidence 245688999999998876666678899999999999876432222 2222222221 2
Q ss_pred CcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 152 VPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 152 ~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
.++|+|+||+|+.... ......+.++.+++.+.+++. ..+++. +||++|.|+++
T Consensus 131 ~~iIvviNK~D~~~~~--~~~~~~i~~~~~~~~~~~~~~----~~~ii~---------iSA~~g~ni~~ 184 (208)
T cd04166 131 RHVVVAVNKMDLVDYS--EEVFEEIVADYLAFAAKLGIE----DITFIP---------ISALDGDNVVS 184 (208)
T ss_pred CcEEEEEEchhcccCC--HHHHHHHHHHHHHHHHHcCCC----CceEEE---------EeCCCCCCCcc
Confidence 3578899999997431 111111234566666777643 145666 99999988874
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-16 Score=156.55 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=107.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHc--CCCCCC------------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVK--GSSFSR------------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~--~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
.-+|+|+|..++|||||+++|+. +.+... ...+.|.++..+...+. ...++++
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~-------------~~~~~in 71 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK-------------WNDYRIN 71 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-------------cCCEEEE
Confidence 35899999999999999999996 333222 12345666666666554 3568899
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
||||||+.+|...+..+++.+|++|+|+|+++....+. ..++..+... ++|+++|.||+|+...
T Consensus 72 liDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~---------------gip~IVviNKiD~~~a 135 (607)
T PRK10218 72 IVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY---------------GLKPIVVINKVDRPGA 135 (607)
T ss_pred EEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc---------------CCCEEEEEECcCCCCC
Confidence 99999999999999999999999999999988644333 3334444443 5789999999998754
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 217 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~ 217 (333)
.... +.++...+...++......++|++. +||++|.+
T Consensus 136 ~~~~-----vl~ei~~l~~~l~~~~~~~~~PVi~---------~SA~~G~~ 172 (607)
T PRK10218 136 RPDW-----VVDQVFDLFVNLDATDEQLDFPIVY---------ASALNGIA 172 (607)
T ss_pred chhH-----HHHHHHHHHhccCccccccCCCEEE---------eEhhcCcc
Confidence 2111 1244444443333321112366777 99999984
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=158.69 Aligned_cols=163 Identities=17% Similarity=0.208 Sum_probs=110.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCCCC------------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK--GSSFSRP------------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELW 88 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~ 88 (333)
+|+|+|..++|||||+.+|+. +.+.... ....|.++..+...+. ...++++||
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-------------~~~~kinlI 69 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-------------YNGTKINIV 69 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE-------------ECCEEEEEE
Confidence 699999999999999999985 3332211 1123455555444433 346889999
Q ss_pred eCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 89 DISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 89 Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
||||+.+|......+++.+|++|+|+|+++.. ......|+..+... ++|+|||+||+|+.....
T Consensus 70 DTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---------------~ip~IVviNKiD~~~a~~ 133 (594)
T TIGR01394 70 DTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---------------GLKPIVVINKIDRPSARP 133 (594)
T ss_pred ECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---------------CCCEEEEEECCCCCCcCH
Confidence 99999999988888999999999999998753 44455677766655 589999999999865421
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc----------CHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR----------YDKEAVMKFFRM 228 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~----------~v~~~~~~l~~~ 228 (333)
. ++.++...+...++...-...+|++. +||++|. |++.+++.+++.
T Consensus 134 ~-----~v~~ei~~l~~~~g~~~e~l~~pvl~---------~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~ 189 (594)
T TIGR01394 134 D-----EVVDEVFDLFAELGADDEQLDFPIVY---------ASGRAGWASLDLDDPSDNMAPLFDAIVRH 189 (594)
T ss_pred H-----HHHHHHHHHHHhhccccccccCcEEe---------chhhcCcccccCcccccCHHHHHHHHHHh
Confidence 1 11244555554444321111256777 9999996 566665555543
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=128.58 Aligned_cols=160 Identities=23% Similarity=0.295 Sum_probs=118.6
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCC---------CC---CCcccceeEEEEEEEeCCCCCCCCccCCCCCceE
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSF---------SR---PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~---------~~---~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
.-.....||+|+|+-++||||++.++...... .. ...|+..|+....+ +...
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~----------------~~~~ 68 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL----------------DEDT 68 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE----------------cCcc
Confidence 34556789999999999999999999976521 11 12455566654444 2346
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.+.|++||||+||+-++..+.+++++.|+++|.+.+..| +....+..+.... .+|++|+.||.||
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--------------~ip~vVa~NK~DL 133 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--------------PIPVVVAINKQDL 133 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--------------CCCEEEEeecccc
Confidence 799999999999999999999999999999999999998 4444555444431 3899999999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.+... .+.++++.+...+ .+|.++ ++|.++.++.+.++.+...
T Consensus 134 ~~a~p--------pe~i~e~l~~~~~-----~~~vi~---------~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 134 FDALP--------PEKIREALKLELL-----SVPVIE---------IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCCCC--------HHHHHHHHHhccC-----CCceee---------eecccchhHHHHHHHHHhh
Confidence 97632 2455555444322 367888 9999998888877776543
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=140.04 Aligned_cols=118 Identities=21% Similarity=0.351 Sum_probs=82.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-----------------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRP-----------------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 85 (333)
+|+|+|..++|||||+++|+........ ....|.++....+.+. ....++..+.+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~--------~~~~~~~~~~i 73 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLV--------LPDSKGKSYLF 73 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEE--------EEcCCCCEEEE
Confidence 6899999999999999999965432210 0112222222222210 00012457889
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
.+|||||+++|......++..+|++|+|+|+++..++.. ..|+..+... ++|+++|+||+|+.
T Consensus 74 ~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~---------------~~p~iiviNK~D~~ 136 (213)
T cd04167 74 NIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE---------------GLPIVLVINKIDRL 136 (213)
T ss_pred EEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---------------CCCEEEEEECcccC
Confidence 999999999998888888999999999999998877643 3455544333 58999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=153.70 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=107.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCcccceeEEEEEEEeCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--SSFS-----------------------------RPSQTIGCTVGVKHITYGS 67 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 67 (333)
...++|+++|..++|||||+.+|+.. .+.. +...+++.+.....+..
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-- 82 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-- 82 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc--
Confidence 34579999999999999999999852 2110 11223344444444433
Q ss_pred CCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHHhcCCCCCCCCCCC
Q 019959 68 SGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGG 146 (333)
Q Consensus 68 ~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~-~~~~i~~~~~~~~~~~~~~ 146 (333)
..+.+.||||+|+++|.......+..+|++|+|+|+++.+++...+. +...+....
T Consensus 83 -------------~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~---------- 139 (426)
T TIGR00483 83 -------------DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL---------- 139 (426)
T ss_pred -------------CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc----------
Confidence 35789999999999987766667889999999999999864422111 111222221
Q ss_pred CCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 147 PGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 147 ~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
...|+|||+||+|+.... .....++.++++++++..++.. ..+++++ +||++|.|+++.+.
T Consensus 140 ---~~~~iIVviNK~Dl~~~~--~~~~~~~~~ei~~~~~~~g~~~--~~~~~i~---------iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 140 ---GINQLIVAINKMDSVNYD--EEEFEAIKKEVSNLIKKVGYNP--DTVPFIP---------ISAWNGDNVIKKSE 200 (426)
T ss_pred ---CCCeEEEEEEChhccCcc--HHHHHHHHHHHHHHHHHcCCCc--ccceEEE---------eecccccccccccc
Confidence 135799999999997421 1111122366777777777531 1257777 99999999987443
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-16 Score=140.25 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=98.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch---
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE--- 94 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e--- 94 (333)
+.--|+|||.||||||||+|++++.... ..-.+|.- .. .+-+.. ....++.+.||||-.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR-~~-I~GI~t--------------~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NR-IRGIVT--------------TDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhh-hh-eeEEEE--------------cCCceEEEEeCCCCCCcc
Confidence 3457999999999999999999988652 22223311 11 111211 346779999999922
Q ss_pred -----hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 95 -----RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 95 -----~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
.........+..+|+++||+|+++...-. ....++.++.. +.|++++.||+|.....
T Consensus 69 ~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~~---------------~~pvil~iNKID~~~~~-- 130 (298)
T COG1159 69 HALGELMNKAARSALKDVDLILFVVDADEGWGPG-DEFILEQLKKT---------------KTPVILVVNKIDKVKPK-- 130 (298)
T ss_pred hHHHHHHHHHHHHHhccCcEEEEEEeccccCCcc-HHHHHHHHhhc---------------CCCeEEEEEccccCCcH--
Confidence 22333444578999999999999854422 12344444442 57999999999988762
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.....+...+... .+|-+. +.+||++|.|++.+.+.+...+
T Consensus 131 --------~~l~~~~~~~~~~-----~~f~~i------vpiSA~~g~n~~~L~~~i~~~L 171 (298)
T COG1159 131 --------TVLLKLIAFLKKL-----LPFKEI------VPISALKGDNVDTLLEIIKEYL 171 (298)
T ss_pred --------HHHHHHHHHHHhh-----CCcceE------EEeeccccCCHHHHHHHHHHhC
Confidence 1112222222211 122222 2299999999988887776543
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-16 Score=155.39 Aligned_cols=175 Identities=19% Similarity=0.204 Sum_probs=105.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CcccceeEEEEEEEeCCCCCCCCccCCCCCceE---EEEEEeCCCch
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRP----SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF---FVELWDISGHE 94 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~i~Dt~G~e 94 (333)
..|+|+|..++|||||+++|.+..+.... .+++|.++..........+. ..... ...+ .+.||||||++
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGP---LKKPL-PIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccce---ecccc-ccccccCCEEEEECCChH
Confidence 47999999999999999999876543322 23444433321110000000 00000 0000 27899999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc-
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR- 170 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~---~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~- 170 (333)
.|..++...+..+|++|+|+|+++ +.+++.+.. +... ++|+++|+||+|+.......
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~~---------------~vpiIvviNK~D~~~~~~~~~ 143 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKRR---------------KTPFVVAANKIDRIPGWKSTE 143 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHHc---------------CCCEEEEEECcCCchhhhhhc
Confidence 999998888899999999999998 555655532 2222 68999999999985321000
Q ss_pred ---------cCcccH-------HHHHHHHHHHcCCCC--------CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 171 ---------GSSGNL-------VDAARQWVEKQGLLP--------SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 171 ---------v~~~~~-------~~~~~~~~~~~~~~~--------~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
....++ ..+...+....|+.. +..++++++ +||++|.|++++++.+.
T Consensus 144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivp---------iSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVP---------VSAKTGEGIPDLLMVLA 214 (586)
T ss_pred CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEee---------ccCCCCCChHHHHHHHH
Confidence 000000 011112223344321 223466777 99999999999888876
Q ss_pred HH
Q 019959 227 RM 228 (333)
Q Consensus 227 ~~ 228 (333)
..
T Consensus 215 ~~ 216 (586)
T PRK04004 215 GL 216 (586)
T ss_pred HH
Confidence 43
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.5e-16 Score=155.77 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=105.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC---CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG---SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
-|+++|..++|||||+++|++. .+..+....++.+.....+... ....+.||||||+++|...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~--------------~g~~i~~IDtPGhe~fi~~ 67 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP--------------DGRVLGFIDVPGHEKFLSN 67 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC--------------CCcEEEEEECCCHHHHHHH
Confidence 5899999999999999999953 3333433344444433333322 1234899999999999777
Q ss_pred HHhhccCCcEEEEEEECCCcc---cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCccc
Q 019959 100 RSILYSQINGVIFVHDLSQRR---TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~---S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~ 175 (333)
....+..+|++++|+|+++.. +.+.+ ..+... ++| +|||+||+|+.++. ... .
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~il~~l---------------gi~~iIVVlNKiDlv~~~--~~~--~ 124 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHL----AILQLT---------------GNPMLTVALTKADRVDEA--RIA--E 124 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHH----HHHHHc---------------CCCeEEEEEECCccCCHH--HHH--H
Confidence 777788999999999998743 33333 223222 355 57999999997532 110 1
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.+++..+....++. ..|+++ +||++|.|++++++.+.+.
T Consensus 125 v~~ei~~~l~~~~~~----~~~ii~---------VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 125 VRRQVKAVLREYGFA----EAKLFV---------TAATEGRGIDALREHLLQL 164 (614)
T ss_pred HHHHHHHHHHhcCCC----CCcEEE---------EeCCCCCCCHHHHHHHHHh
Confidence 124455555555542 356777 9999999999988888654
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-16 Score=150.76 Aligned_cols=163 Identities=15% Similarity=0.222 Sum_probs=101.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC--C-----------------------------CCCcccceeEEEEEEEeCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF--S-----------------------------RPSQTIGCTVGVKHITYGS 67 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~--~-----------------------------~~~~t~~~~~~~~~~~~~~ 67 (333)
...++|+|+|..++|||||+++|+...-. . +....++.+.....+.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~--- 80 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE--- 80 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe---
Confidence 45689999999999999999999843110 0 0012222233222332
Q ss_pred CCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCC
Q 019959 68 SGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGG 146 (333)
Q Consensus 68 ~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~ 146 (333)
...+.+.||||||+++|.......+..+|++|+|+|+++...+... ..++..+....
T Consensus 81 ------------~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~---------- 138 (425)
T PRK12317 81 ------------TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG---------- 138 (425)
T ss_pred ------------cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC----------
Confidence 2457899999999998876555557899999999999973222221 12222222221
Q ss_pred CCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 147 PGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 147 ~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
..|++||+||+|+....... ..++.+++.++++..++.. +.+++++ +||++|.|+++..+
T Consensus 139 ----~~~iivviNK~Dl~~~~~~~--~~~~~~~i~~~l~~~g~~~--~~~~ii~---------iSA~~g~gi~~~~~ 198 (425)
T PRK12317 139 ----INQLIVAINKMDAVNYDEKR--YEEVKEEVSKLLKMVGYKP--DDIPFIP---------VSAFEGDNVVKKSE 198 (425)
T ss_pred ----CCeEEEEEEccccccccHHH--HHHHHHHHHHHHHhhCCCc--CcceEEE---------eecccCCCcccccc
Confidence 24699999999997521000 0112355666666666421 1256777 99999999987543
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=144.33 Aligned_cols=149 Identities=17% Similarity=0.137 Sum_probs=104.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY---- 96 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~---- 96 (333)
..|+|||.||||||||+|||++.+. +....+.++.|.......+. ...+.+.||+|.+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~---------------~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWL---------------GREFILIDTGGLDDGDEDE 68 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEc---------------CceEEEEECCCCCcCCchH
Confidence 3799999999999999999997754 34555555666666666664 234999999995422
Q ss_pred -----hhhHHhhccCCcEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 97 -----KDCRSILYSQINGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 97 -----~~~~~~~~~~ad~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
.......+..||++|||+|....-+-.+ +..|+. .. +.|+|||.||+|-...
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr---~~---------------~kpviLvvNK~D~~~~--- 127 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR---RS---------------KKPVILVVNKIDNLKA--- 127 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH---hc---------------CCCEEEEEEcccCchh---
Confidence 2223345779999999999987554332 333433 22 6899999999998743
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+....-...+|+-. .+. +||..|.|+.++++.+.+.+
T Consensus 128 --------e~~~~efyslG~g~------~~~---------ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 128 --------EELAYEFYSLGFGE------PVP---------ISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred --------hhhHHHHHhcCCCC------ceE---------eehhhccCHHHHHHHHHhhc
Confidence 22222234567543 333 99999999999999888765
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-15 Score=134.47 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=81.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-C------------C-C--CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF-S------------R-P--SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~-~------------~-~--~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
+|+|+|..|+|||||+++|+...-. . . . ....+.++......+. ...+++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-------------~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-------------WEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE-------------ECCEEEE
Confidence 4899999999999999999853110 0 0 0 0111222323333322 3467899
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
+|||||+.+|......+++.+|++|+|+|+++.... ....|+..+... ++|+++|+||+|+..
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---------------~~P~iivvNK~D~~~ 130 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---------------NIPTIIFVNKIDRAG 130 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---------------CCCEEEEEECccccC
Confidence 999999999988888899999999999999987654 334555555544 589999999999874
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-16 Score=149.30 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=118.9
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....++|+|||+.|||||||+-.++..+|...-++.... ..+..+ ..-..+...|.|++..+.-+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~----i~IPad-----------vtPe~vpt~ivD~ss~~~~~ 70 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR----ILIPAD-----------VTPENVPTSIVDTSSDSDDR 70 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc----cccCCc-----------cCcCcCceEEEecccccchh
Confidence 345689999999999999999999999987765543221 111111 11234448899998766655
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
.....-+++||++.+||+++++.+.+.+ .+|+..++.... +..++||||||||+|+.......+.
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~----------~~~~~PVILvGNK~d~~~~~~~s~e---- 136 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFG----------DYHETPVILVGNKSDNGDNENNSDE---- 136 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccC----------CCccCCEEEEeeccCCccccccchh----
Confidence 5555668999999999999999999999 579999988752 1248999999999999876322111
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.....+...+. |.-..+| |||++-.++.++|.-..+.++.
T Consensus 137 -~~~~pim~~f~-----EiEtcie---------cSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 137 -VNTLPIMIAFA-----EIETCIE---------CSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred -HHHHHHHHHhH-----HHHHHHh---------hhhhhhhhhHhhhhhhhheeec
Confidence 11222222221 1123566 9999999999988877666554
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=143.10 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=107.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
...-+||+|+|.||||||||+|.|++.+ -+....+..+.|+....+.++ .+.+.|.||+|..+-
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~---------------G~pv~l~DTAGiRet 278 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN---------------GIPVRLVDTAGIRET 278 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEEC---------------CEEEEEEecCCcccC
Confidence 3445799999999999999999999764 455666666788888888886 578999999994332
Q ss_pred hh--------hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 97 KD--------CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 97 ~~--------~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
.. .....+..||.+++|+|.+.+.+-..... +. . . ..+.|+++|.||+||..+..
T Consensus 279 ~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~-~--~-------------~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 279 DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL-IE-L--L-------------PKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH-HH-h--c-------------ccCCCEEEEEechhcccccc
Confidence 21 22345789999999999999744333211 11 1 1 13689999999999987621
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
...+ +.. .+.+++. +||++|.|++.+.+.+.+.+...
T Consensus 342 -----------~~~~--~~~-----~~~~~i~---------iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 342 -----------LESE--KLA-----NGDAIIS---------ISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred -----------cchh--hcc-----CCCceEE---------EEecCccCHHHHHHHHHHHHhhc
Confidence 1111 111 1134555 99999988888877776655443
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=146.94 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=102.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC---CC--CcccceeEEEEEEE----eCCCC--CCCCccCC---CCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS---RP--SQTIGCTVGVKHIT----YGSSG--SSSNSIKG---DSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~---~~--~~t~~~~~~~~~~~----~~~~~--~~~~~i~~---~~~~~~~ 84 (333)
...++|+++|..++|||||+++|.+..... +. ..|+.+.+...... ++.+. .+....+. .......
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 356899999999999999999997532111 11 11122211110000 00000 00000000 0012467
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
+.+|||||+++|.......+..+|++|+|+|+++..........+..+...+ ..|+++|+||+|+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--------------i~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--------------IKNIVIVQNKIDLV 147 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--------------CCeEEEEEEccccC
Confidence 9999999999998887777888999999999996431111122222232221 24689999999997
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
..+.... ..+++..+.+... ...+|+++ +||++|.|++++++.|...
T Consensus 148 ~~~~~~~----~~~~i~~~l~~~~----~~~~~ii~---------vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 148 SKEKALE----NYEEIKEFVKGTV----AENAPIIP---------VSALHNANIDALLEAIEKF 194 (406)
T ss_pred CHHHHHH----HHHHHHhhhhhcc----cCCCeEEE---------EECCCCCChHHHHHHHHHh
Confidence 5421100 0133333333221 12367777 9999999998888877654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=146.47 Aligned_cols=177 Identities=19% Similarity=0.182 Sum_probs=98.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC------cccceeEEEEEEEe------CCCCCCCCccC--C-CCCceEE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPS------QTIGCTVGVKHITY------GSSGSSSNSIK--G-DSERDFF 84 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~------~t~~~~~~~~~~~~------~~~~~~~~~i~--~-~~~~~~~ 84 (333)
..++|+++|..++|||||+.+|.+.. ..... .|+...+....+.. +..-.+..... + .......
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~-~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVW-TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCee-cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 34899999999999999999996531 11111 12221111101100 00000000000 0 0011367
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
+.||||||+++|..........+|++|+|+|+++.. .-+....+ ..+.... ..|+++|+||+|+
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~~--------------i~~iiVVlNK~Dl 151 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDIIG--------------IKNIVIVQNKIDL 151 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHcC--------------CCcEEEEEEeecc
Confidence 999999999988766555566789999999999653 22222111 1222221 2368999999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+..... +..+++..+++... ...+++++ +||++|.|++++++.|...+
T Consensus 152 ~~~~~~~----~~~~~i~~~l~~~~----~~~~~ii~---------vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 152 VSKERAL----ENYEQIKEFVKGTV----AENAPIIP---------VSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred ccchhHH----HHHHHHHHHhcccc----CCCCeEEE---------EECCCCcCHHHHHHHHHHhC
Confidence 7642110 00133333333221 12356777 99999999988888776543
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-15 Score=122.38 Aligned_cols=135 Identities=19% Similarity=0.310 Sum_probs=94.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC----chhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG----HERYKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G----~e~~~~ 98 (333)
||+|||+.|+|||||+++|.+... .+..|..+.+. =.+.|||| ...|..
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------------------------~~~IDTPGEyiE~~~~y~ 55 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------------------------DNTIDTPGEYIENPRFYH 55 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------------------------ccEEECChhheeCHHHHH
Confidence 899999999999999999998755 33333233221 24579999 233333
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
.......+||+|++|.|++++.+.- -..+... .+.|+|-|.||+|+..++ .. .+
T Consensus 56 aLi~ta~dad~V~ll~dat~~~~~~-----pP~fa~~--------------f~~pvIGVITK~Dl~~~~-~~------i~ 109 (143)
T PF10662_consen 56 ALIVTAQDADVVLLLQDATEPRSVF-----PPGFASM--------------FNKPVIGVITKIDLPSDD-AN------IE 109 (143)
T ss_pred HHHHHHhhCCEEEEEecCCCCCccC-----Cchhhcc--------------cCCCEEEEEECccCccch-hh------HH
Confidence 3334456999999999999876421 1111111 267999999999999321 11 47
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l 225 (333)
.++++.+..|+.. .|+ +|+.+|+|++++.+.|
T Consensus 110 ~a~~~L~~aG~~~------if~---------vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 110 RAKKWLKNAGVKE------IFE---------VSAVTGEGIEELKDYL 141 (143)
T ss_pred HHHHHHHHcCCCC------eEE---------EECCCCcCHHHHHHHH
Confidence 7889999999863 355 9999999998887765
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=132.79 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=93.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-C------------------------------CCCcccceeEEEEEEEeCCCCCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF-S------------------------------RPSQTIGCTVGVKHITYGSSGSS 71 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~-~------------------------------~~~~t~~~~~~~~~~~~~~~~~~ 71 (333)
+|+|+|..++|||||+.+|+...-. . +....+..+.....+.+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~------ 74 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET------ 74 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee------
Confidence 4899999999999999999732100 0 00111122222222322
Q ss_pred CCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc-------cHHHHHHHHHHHHhcCCCCCCCCC
Q 019959 72 SNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR-------TKTSLQKWAVEIATSGTFSAPLAS 144 (333)
Q Consensus 72 ~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~-------S~~~l~~~~~~i~~~~~~~~~~~~ 144 (333)
..+.+.+|||+|+..|.......+..+|++|+|+|+++.. ..+....|. ......
T Consensus 75 ---------~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~~-------- 136 (219)
T cd01883 75 ---------EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTLG-------- 136 (219)
T ss_pred ---------CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHcC--------
Confidence 3578999999999888776666778899999999999852 112222222 222221
Q ss_pred CCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHH
Q 019959 145 GGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDK 219 (333)
Q Consensus 145 ~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~ 219 (333)
..|+|+|+||+|+...........++.++++.+.+..++.. ..+++++ +||++|.|++
T Consensus 137 ------~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~--~~~~ii~---------iSA~tg~gi~ 194 (219)
T cd01883 137 ------VKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNP--KDVPFIP---------ISGLTGDNLI 194 (219)
T ss_pred ------CCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCc--CCceEEE---------eecCcCCCCC
Confidence 35899999999997321001111112233444445555321 1356777 9999998876
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-15 Score=131.08 Aligned_cols=128 Identities=23% Similarity=0.289 Sum_probs=76.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcc------------cceeEE--EEEEEeCCCCC--------CCCc-cCCCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQT------------IGCTVG--VKHITYGSSGS--------SSNS-IKGDS 79 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t------------~~~~~~--~~~~~~~~~~~--------~~~~-i~~~~ 79 (333)
||+++|+.++|||||+.+|+.+.+....... .|.+.. ...+.++..+. +... .....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999976653311100 011000 00111110000 0000 00011
Q ss_pred CceEEEEEEeCCCchhhhhhHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEE
Q 019959 80 ERDFFVELWDISGHERYKDCRSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 157 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~~~~~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivV 157 (333)
.....+.+.||||+++|.......+. .+|++++|+|+.....-. ...++..+... ++|+++|
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~---------------~ip~ivv 144 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL---------------NIPVFVV 144 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc---------------CCCEEEE
Confidence 22457899999999998765544443 689999999998765422 23444444444 5899999
Q ss_pred eeCcCCCCc
Q 019959 158 GNKADVAAK 166 (333)
Q Consensus 158 gNK~Dl~~~ 166 (333)
.||+|+...
T Consensus 145 vNK~D~~~~ 153 (224)
T cd04165 145 VTKIDLAPA 153 (224)
T ss_pred EECccccCH
Confidence 999998654
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=126.28 Aligned_cols=155 Identities=23% Similarity=0.259 Sum_probs=100.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-------CC-------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSS-------FS-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~-------~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
+++|+++|..++|||||+++|++... .. .....-|.+.....+.+. .....+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-------------~~~~~i~ 68 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-------------TANRHYA 68 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-------------CCCeEEE
Confidence 57999999999999999999985310 00 000112333333333332 2356789
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCC
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAA 165 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~ 165 (333)
+.||||+.+|.......+..+|++|+|+|++....-. ....+..+... ++| +|+|.||+|+..
T Consensus 69 ~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---------------~~~~iIvviNK~D~~~ 132 (195)
T cd01884 69 HVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---------------GVPYIVVFLNKADMVD 132 (195)
T ss_pred EEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---------------CCCcEEEEEeCCCCCC
Confidence 9999999988777777788999999999998754322 22333444444 466 788999999964
Q ss_pred ccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
+. + ....+.+++..+...+|+.. .++|++. +||++|.|.
T Consensus 133 ~~--~-~~~~~~~~i~~~l~~~g~~~--~~v~iip---------iSa~~g~n~ 171 (195)
T cd01884 133 DE--E-LLELVEMEVRELLSKYGFDG--DNTPIVR---------GSALKALEG 171 (195)
T ss_pred cH--H-HHHHHHHHHHHHHHHhcccc--cCCeEEE---------eeCccccCC
Confidence 31 1 11112345666666666521 1367777 999999885
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-14 Score=122.11 Aligned_cols=165 Identities=21% Similarity=0.306 Sum_probs=114.5
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC--
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG-- 92 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G-- 92 (333)
.-|.....-|+++|.+|||||||+|+|++..-......|.|.+.....+.+++ . +.+.|.||
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-------------~---~~lVDlPGYG 81 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-------------E---LRLVDLPGYG 81 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-------------c---EEEEeCCCcc
Confidence 44556667999999999999999999999876566666778877777777752 2 88999999
Q ss_pred --------chhhhhhHHhhcc---CCcEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 93 --------HERYKDCRSILYS---QINGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 93 --------~e~~~~~~~~~~~---~ad~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
.+....+...|++ +..++++++|+...-.-.+ +-.|+.+ . ++|++||+|
T Consensus 82 yAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~---~---------------~i~~~vv~t 143 (200)
T COG0218 82 YAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE---L---------------GIPVIVVLT 143 (200)
T ss_pred cccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH---c---------------CCCeEEEEE
Confidence 4555566666665 4678899999987655433 2344443 3 799999999
Q ss_pred CcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 160 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 160 K~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
|+|......+ .......++.+++.+-...+ + +..|+.++.|++++-..|.+.+.
T Consensus 144 K~DKi~~~~~-------~k~l~~v~~~l~~~~~~~~~-~---------~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 144 KADKLKKSER-------NKQLNKVAEELKKPPPDDQW-V---------VLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ccccCChhHH-------HHHHHHHHHHhcCCCCccce-E---------EEEecccccCHHHHHHHHHHHhh
Confidence 9999875311 12334455555543211101 2 23788899888888888877653
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.1e-16 Score=123.98 Aligned_cols=163 Identities=20% Similarity=0.300 Sum_probs=119.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
.+.+|.++|--|+|||+++.++.-++. ....||+|.. ...+.+ ++.++++||..|+...+..
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfn--ve~v~y---------------KNLk~~vwdLggqtSirPy 78 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFN--VETVPY---------------KNLKFQVWDLGGQTSIRPY 78 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcC--cccccc---------------ccccceeeEccCcccccHH
Confidence 678999999999999999999976655 4566777754 344443 4677999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
++.||.+.|++|+|+|.+|++........+..+.... ...+..++|++||.|.... ..
T Consensus 79 WRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~-----------eLq~a~llv~anKqD~~~~-----------~t 136 (182)
T KOG0072|consen 79 WRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEE-----------ELQHAKLLVFANKQDYSGA-----------LT 136 (182)
T ss_pred HHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccH-----------hhcCceEEEEeccccchhh-----------hh
Confidence 9999999999999999999987655544443333321 1235778999999998764 22
Q ss_pred HHHHHHHcCCCCCCc-CCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~-~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..+..+.+|+..... ....|+ +||.+|.|++..++++.+-+..
T Consensus 137 ~~E~~~~L~l~~Lk~r~~~Iv~---------tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 137 RSEVLKMLGLQKLKDRIWQIVK---------TSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHhChHHHhhheeEEEe---------eccccccCCcHHHHHHHHHHhc
Confidence 233334444422111 134666 9999999999999999876643
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8e-15 Score=139.85 Aligned_cols=160 Identities=18% Similarity=0.187 Sum_probs=108.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-----
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH----- 93 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~----- 93 (333)
..+||+|||.||||||||+|+|++.+ .+....+..+.|.-...++++ ...+.+.||+|.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~---------------~~~~~liDTAGiRrk~k 241 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD---------------GRKYVLIDTAGIRRKGK 241 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC---------------CeEEEEEECCCCCcccc
Confidence 46899999999999999999999764 344445544555555666654 345789999993
Q ss_pred -----hhhhhhHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 94 -----ERYKDCRS-ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 94 -----e~~~~~~~-~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
|.|..... ..+..+|++++|.|++.+-+-+.. .....+.+. ..++|+|.||.|+.+.+
T Consensus 242 i~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~---------------g~~~vIvvNKWDl~~~~ 305 (444)
T COG1160 242 ITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEEA---------------GRGIVIVVNKWDLVEED 305 (444)
T ss_pred cccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc---------------CCCeEEEEEccccCCch
Confidence 33433222 246789999999999998765543 344444444 57899999999998752
Q ss_pred CCccCcccHHHHH-HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAA-RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 168 ~r~v~~~~~~~~~-~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.... ++. .++-.++....| .|.+. +||++|.++..+|+.+.+.
T Consensus 306 --~~~~----~~~k~~i~~~l~~l~~---a~i~~---------iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 306 --EATM----EEFKKKLRRKLPFLDF---APIVF---------ISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred --hhHH----HHHHHHHHHHhccccC---CeEEE---------EEecCCCChHHHHHHHHHH
Confidence 2221 222 222233333322 34555 9999999999988887654
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=127.14 Aligned_cols=169 Identities=17% Similarity=0.199 Sum_probs=97.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccce-eEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh--
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGC-TVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD-- 98 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~-- 98 (333)
+||+|+|++|||||||+|+|++..+......+.+. ........+.. .....+.+|||+|......
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~------------~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH------------PKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec------------CCCCCceEEeCCCCCcccCCH
Confidence 69999999999999999999986553322222221 11111111110 1123589999999643211
Q ss_pred ---hHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC--cc-
Q 019959 99 ---CRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT--RG- 171 (333)
Q Consensus 99 ---~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r--~v- 171 (333)
+....+.++|++++|.|. +|... ..|+..+... ..|+++|+||+|+...... ..
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~---------------~~~~ilV~nK~D~~~~~~~~~~~~ 130 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQCM---------------GKKFYFVRTKVDRDLSNEQRSKPR 130 (197)
T ss_pred HHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh---------------CCCEEEEEecccchhhhhhccccc
Confidence 222336788999988432 23333 3566666655 4689999999999532111 00
Q ss_pred --CcccHHHHHHHHHH----HcCCCCCCcCCCccccCCCCCceeeeec--cCcCHHHHHHHHHHHHHHHHh
Q 019959 172 --SSGNLVDAARQWVE----KQGLLPSSEELPLTESFPGGGGLIAAAK--EARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 172 --~~~~~~~~~~~~~~----~~~~~~~~~~~p~~E~~~~~~~~~~SAk--~g~~v~~~~~~l~~~l~~~~~ 234 (333)
...++.++.++.+. ..+.. ..++|- +|+. .++++..+.+.+...|-....
T Consensus 131 ~~~~~~~l~~i~~~~~~~~~~~~~~----~p~v~~---------vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 131 SFNREQVLQEIRDNCLENLQEAGVS----EPPVFL---------VSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCC----CCCEEE---------EeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 11122333333333 22221 123444 9998 678999999998888876543
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-14 Score=128.96 Aligned_cols=115 Identities=17% Similarity=0.283 Sum_probs=79.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCCC---------Ccc----------cceeEEEEEEEeCCCCCCCCccCCCCCce
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS-SFSRP---------SQT----------IGCTVGVKHITYGSSGSSSNSIKGDSERD 82 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~-~~~~~---------~~t----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 82 (333)
+|+|+|..|+|||||+++|+... .+... ..+ -+.++......+. ...
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~-------------~~~ 70 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE-------------YRD 70 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe-------------eCC
Confidence 69999999999999999998431 11100 000 1222222222222 346
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
+++++|||||+.+|......+++.+|++|+|+|+++..... ...++...... ++|+++++||+|
T Consensus 71 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~~---------------~~P~iivvNK~D 134 (267)
T cd04169 71 CVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRLR---------------GIPIITFINKLD 134 (267)
T ss_pred EEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHhc---------------CCCEEEEEECCc
Confidence 88999999999999887777889999999999998864322 23444444333 689999999999
Q ss_pred CCCc
Q 019959 163 VAAK 166 (333)
Q Consensus 163 l~~~ 166 (333)
+...
T Consensus 135 ~~~a 138 (267)
T cd04169 135 REGR 138 (267)
T ss_pred cCCC
Confidence 8754
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-14 Score=126.60 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=89.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCC-------------CcccceeEEE--EEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF-SRP-------------SQTIGCTVGV--KHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~-~~~-------------~~t~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
+|+|+|..++|||||+.+|+...-. ... ...-|.+... ..+.+...+ .. ..++..+.++
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~--~~---~~~~~~~~i~ 76 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEE--ED---KADGNEYLIN 76 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCc--cc---ccCCCceEEE
Confidence 6899999999999999999843211 000 0001111111 122222100 00 1125578999
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
||||||+++|......+++.+|++|+|||+++..+.+....|. .+... ++|+|||+||+|+...
T Consensus 77 iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~~---------------~~p~ilviNKiD~~~~ 140 (222)
T cd01885 77 LIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALKE---------------RVKPVLVINKIDRLIL 140 (222)
T ss_pred EECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHHc---------------CCCEEEEEECCCcchh
Confidence 9999999999999899999999999999999887666533333 33222 5799999999998633
Q ss_pred cCCccCcccHHHHHHHHHHHc
Q 019959 167 EGTRGSSGNLVDAARQWVEKQ 187 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~ 187 (333)
+ +.++..+.++...++.++.
T Consensus 141 e-~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 141 E-LKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred h-hcCCHHHHHHHHHHHHHHH
Confidence 2 3444433334444444433
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-14 Score=135.74 Aligned_cols=156 Identities=22% Similarity=0.265 Sum_probs=98.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC-------CCC-----C--CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG-------SSF-----S--RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~-------~~~-----~--~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
...++|+++|..++|||||+++|++. .+. . .....-|.+.......+. .....
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-------------~~~~~ 76 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-------------TANRH 76 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-------------CCCcE
Confidence 34589999999999999999999862 110 0 001122333333333332 23456
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEE-EEeeCcCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV-VIGNKADV 163 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pii-vVgNK~Dl 163 (333)
+.|+||||+++|.......+..+|++++|+|+.+...-+ ...++..+... ++|.+ +|.||+|+
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~---------------gi~~iivvvNK~Dl 140 (396)
T PRK12735 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---------------GVPYIVVFLNKCDM 140 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc---------------CCCeEEEEEEecCC
Confidence 899999999988776666788999999999998754322 22333344333 57755 67999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 217 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~ 217 (333)
..... ....+.++++.+.+.+++.. +++|+++ +||++|.|
T Consensus 141 ~~~~~---~~~~~~~ei~~~l~~~~~~~--~~~~ii~---------~Sa~~g~n 180 (396)
T PRK12735 141 VDDEE---LLELVEMEVRELLSKYDFPG--DDTPIIR---------GSALKALE 180 (396)
T ss_pred cchHH---HHHHHHHHHHHHHHHcCCCc--CceeEEe---------cchhcccc
Confidence 74311 11112245666666665421 1366777 99999864
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-13 Score=123.53 Aligned_cols=160 Identities=20% Similarity=0.191 Sum_probs=106.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc---
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH--- 93 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~--- 93 (333)
+....|+|.|.||||||||++++++.+.. ..+..|-++.+ -++.+ ....+++.||||.
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~v--Ghfe~---------------~~~R~QvIDTPGlLDR 228 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHV--GHFER---------------GYLRIQVIDTPGLLDR 228 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeE--eeeec---------------CCceEEEecCCcccCC
Confidence 45568999999999999999999977543 33334444333 33332 3457999999991
Q ss_pred --hhhhhh---HHhhcc-CCcEEEEEEECCCcc--cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 94 --ERYKDC---RSILYS-QINGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 94 --e~~~~~---~~~~~~-~ad~vIlV~D~s~~~--S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
++.+.+ .-..++ =+++|+|+||.|... +.+.-..++.++.... +.|+++|.||+|+.+
T Consensus 229 Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--------------~~p~v~V~nK~D~~~ 294 (346)
T COG1084 229 PLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--------------KAPIVVVINKIDIAD 294 (346)
T ss_pred ChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--------------CCCeEEEEecccccc
Confidence 111111 111223 368999999998754 5666667888888874 589999999999986
Q ss_pred ccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+. .+++......-|... ... +++..+.+++.+.+.+.....+.
T Consensus 295 ~e~--------~~~~~~~~~~~~~~~------~~~---------~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 295 EEK--------LEEIEASVLEEGGEE------PLK---------ISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred hhH--------HHHHHHHHHhhcccc------ccc---------eeeeehhhHHHHHHHHHHHhhch
Confidence 521 244454455555332 222 89999988888777777665544
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.4e-14 Score=137.00 Aligned_cols=162 Identities=15% Similarity=0.255 Sum_probs=105.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC--CC---------------------------CCCcccceeEEEEEEEeCCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS--FS---------------------------RPSQTIGCTVGVKHITYGSSG 69 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 69 (333)
..+++|+++|..++|||||+-+|+...- .. .....-|.++......+.
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~--- 81 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE--- 81 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec---
Confidence 3457999999999999999999974210 00 000011222222222222
Q ss_pred CCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHH-------HHHHHHHHHHhcCCCCCCC
Q 019959 70 SSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKT-------SLQKWAVEIATSGTFSAPL 142 (333)
Q Consensus 70 ~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~-------~l~~~~~~i~~~~~~~~~~ 142 (333)
.....+.|.|+||+++|.......+..+|++|+|+|+++. .|+ .....+..+...
T Consensus 82 ----------~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~------- 143 (447)
T PLN00043 82 ----------TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL------- 143 (447)
T ss_pred ----------CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc-------
Confidence 3467899999999999998888889999999999999873 332 233333333333
Q ss_pred CCCCCCCCCC-cEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 143 ASGGPGGLPV-PYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 143 ~~~~~~~~~~-PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
++ ++||++||+|+.+.......-.++.++++.++++.|+.. ++++|++ +||++|.|+.+
T Consensus 144 --------gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~--~~~~~ip---------iSa~~G~ni~~ 203 (447)
T PLN00043 144 --------GVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNP--DKIPFVP---------ISGFEGDNMIE 203 (447)
T ss_pred --------CCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCc--ccceEEE---------Eeccccccccc
Confidence 46 478899999986321111122334577888888888642 2367888 99999999854
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=132.55 Aligned_cols=154 Identities=21% Similarity=0.250 Sum_probs=97.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-------CC-----C--CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS-------SF-----S--RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~-------~~-----~--~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 85 (333)
..++|+++|..++|||||+++|++.. +. . .....-|.+.......+. .....+
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-------------~~~~~i 77 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-------------TEKRHY 77 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-------------CCCcEE
Confidence 35799999999999999999998531 00 0 001122333333344443 234568
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVA 164 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~ 164 (333)
.|+||||+++|.......+..+|++|+|+|+++...-.. ..++..+... ++| +|||.||+|+.
T Consensus 78 ~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---------------g~~~~IvviNK~D~~ 141 (394)
T PRK12736 78 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---------------GVPYLVVFLNKVDLV 141 (394)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---------------CCCEEEEEEEecCCc
Confidence 899999999987766666788999999999987533222 2233334333 467 67899999997
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR 216 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~ 216 (333)
+... .. ..+.++...+.+..++.. ..+|++. +||++|.
T Consensus 142 ~~~~--~~-~~i~~~i~~~l~~~~~~~--~~~~ii~---------vSa~~g~ 179 (394)
T PRK12736 142 DDEE--LL-ELVEMEVRELLSEYDFPG--DDIPVIR---------GSALKAL 179 (394)
T ss_pred chHH--HH-HHHHHHHHHHHHHhCCCc--CCccEEE---------eeccccc
Confidence 4321 10 112245566666666421 1357777 9999984
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=132.27 Aligned_cols=155 Identities=21% Similarity=0.258 Sum_probs=98.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC-------CCC-----C--CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG-------SSF-----S--RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~-------~~~-----~--~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
...++|+++|..++|||||+++|++. .+. . .....-|.+.....+.+. .....
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-------------~~~~~ 76 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-------------TENRH 76 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-------------CCCEE
Confidence 45689999999999999999999732 010 0 001112333333444443 34567
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE-EEEeeCcCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-VVIGNKADV 163 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi-ivVgNK~Dl 163 (333)
+.||||||+++|..........+|++|+|+|+++....+.. ..+..+... ++|. |+|+||+|+
T Consensus 77 ~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~---------------gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV---------------GVPYIVVFLNKCDM 140 (394)
T ss_pred EEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---------------CCCEEEEEEEeccc
Confidence 89999999999976665667789999999999874332222 233333333 4665 468999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR 216 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~ 216 (333)
.+... . ...+.++++.+++..++.. ..+|+++ +||++|.
T Consensus 141 ~~~~~--~-~~~~~~~i~~~l~~~~~~~--~~~~ii~---------vSa~~g~ 179 (394)
T TIGR00485 141 VDDEE--L-LELVEMEVRELLSEYDFPG--DDTPIIR---------GSALKAL 179 (394)
T ss_pred CCHHH--H-HHHHHHHHHHHHHhcCCCc--cCccEEE---------Ccccccc
Confidence 75321 1 1112245666777666431 1267777 9999885
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.53 E-value=9e-14 Score=135.14 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=95.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCC--------------------------------CCcccceeEEEEEEEeCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS-FSR--------------------------------PSQTIGCTVGVKHITYGSS 68 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~-~~~--------------------------------~~~t~~~~~~~~~~~~~~~ 68 (333)
++|+|+|..++|||||+.+|+...- ... ....+..+.....+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~---- 76 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS---- 76 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc----
Confidence 5899999999999999999974311 100 001111222222222
Q ss_pred CCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 019959 69 GSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPG 148 (333)
Q Consensus 69 ~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~ 148 (333)
....++.|+||||+++|.......+..+|++|+|+|++....-+....|. .+...+
T Consensus 77 -----------~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~~------------ 132 (406)
T TIGR02034 77 -----------TDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLLG------------ 132 (406)
T ss_pred -----------cCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHcC------------
Confidence 23457899999999999766666788999999999998754322222222 222221
Q ss_pred CCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 149 GLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 149 ~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
..++|||.||+|+...+. .. ..++.++...+.+..++. ++++++ +||++|.|+++
T Consensus 133 --~~~iivviNK~D~~~~~~-~~-~~~i~~~~~~~~~~~~~~----~~~iip---------iSA~~g~ni~~ 187 (406)
T TIGR02034 133 --IRHVVLAVNKMDLVDYDE-EV-FENIKKDYLAFAEQLGFR----DVTFIP---------LSALKGDNVVS 187 (406)
T ss_pred --CCcEEEEEEecccccchH-HH-HHHHHHHHHHHHHHcCCC----CccEEE---------eecccCCCCcc
Confidence 235889999999975321 10 111223444445555542 356777 99999999875
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=126.70 Aligned_cols=137 Identities=15% Similarity=0.224 Sum_probs=85.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCC----------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEe
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSR----------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWD 89 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~D 89 (333)
..++|+|+|.+|+|||||+|+|++..+... ...|++.+.....+..+ +..+.+.|||
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~-------------g~~~~l~iiD 69 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEEN-------------GVKLKLTVID 69 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEEC-------------CEEEEEEEEe
Confidence 358999999999999999999998876543 24454554444444433 5678899999
Q ss_pred CCCchhhh--------------------------hhHHhhcc--CCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCC
Q 019959 90 ISGHERYK--------------------------DCRSILYS--QINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSA 140 (333)
Q Consensus 90 t~G~e~~~--------------------------~~~~~~~~--~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~ 140 (333)
|+|-..+. ..+...+. ++|+++++++.+... +... ...+..+..
T Consensus 70 TpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~------ 142 (276)
T cd01850 70 TPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLSK------ 142 (276)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHhc------
Confidence 99932211 11112222 478888888877522 1111 122333321
Q ss_pred CCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCC
Q 019959 141 PLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190 (333)
Q Consensus 141 ~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~ 190 (333)
.+|+++|+||+|+........ ..+.+++.++.+++.
T Consensus 143 ----------~v~vi~VinK~D~l~~~e~~~----~k~~i~~~l~~~~i~ 178 (276)
T cd01850 143 ----------RVNIIPVIAKADTLTPEELKE----FKQRIMEDIEEHNIK 178 (276)
T ss_pred ----------cCCEEEEEECCCcCCHHHHHH----HHHHHHHHHHHcCCc
Confidence 479999999999975422221 236677777777743
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=134.96 Aligned_cols=117 Identities=17% Similarity=0.259 Sum_probs=81.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC-CCCC----------------C---CCcccceeEEEEEEEeCCCCCCCCccCCCCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG-SSFS----------------R---PSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~-~~~~----------------~---~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (333)
.-+|+|+|..++|||||+++|+.. ..+. . ....-|.++......+. .
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~-------------~ 76 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFP-------------Y 76 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEE-------------E
Confidence 449999999999999999999731 1100 0 00011333333333332 2
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
..+.+++|||||+++|......+++.+|++|+|+|+++...- ....++...... ++|+++++||
T Consensus 77 ~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~~---------------~iPiiv~iNK 140 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRLR---------------DTPIFTFINK 140 (526)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHhc---------------CCCEEEEEEC
Confidence 457899999999999988777789999999999999886432 233444444333 6899999999
Q ss_pred cCCCCc
Q 019959 161 ADVAAK 166 (333)
Q Consensus 161 ~Dl~~~ 166 (333)
+|+...
T Consensus 141 ~D~~~a 146 (526)
T PRK00741 141 LDRDGR 146 (526)
T ss_pred Cccccc
Confidence 998653
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=139.84 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=83.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC-------------C-------CCCcccceeEEEEEEEeCCCCCCCCccCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF-------------S-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGD 78 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-------------~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~ 78 (333)
....+|+|+|..++|||||+++|+...-. . ....|+... ...+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~--~~~~~~------------- 70 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA--ATSCDW------------- 70 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc--eEEEEE-------------
Confidence 34569999999999999999999853110 0 011121111 122222
Q ss_pred CCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEe
Q 019959 79 SERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 158 (333)
Q Consensus 79 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVg 158 (333)
..+.+.||||||+.+|......+++.+|++|+|+|+++.........|. .+... ++|+++|+
T Consensus 71 --~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~~---------------~~p~iivi 132 (687)
T PRK13351 71 --DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADRY---------------GIPRLIFI 132 (687)
T ss_pred --CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHhc---------------CCCEEEEE
Confidence 3578999999999999988888999999999999999988777665553 34333 58999999
Q ss_pred eCcCCCCc
Q 019959 159 NKADVAAK 166 (333)
Q Consensus 159 NK~Dl~~~ 166 (333)
||+|+...
T Consensus 133 NK~D~~~~ 140 (687)
T PRK13351 133 NKMDRVGA 140 (687)
T ss_pred ECCCCCCC
Confidence 99998754
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-13 Score=133.23 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=101.6
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC------CCC--------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS------SFS--------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~------~~~--------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
....++|+++|..++|||||+++|++.. ... ......|.+.......+. ....
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-------------~~~~ 144 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-------------TENR 144 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-------------cCCc
Confidence 4556899999999999999999999521 111 011112333322222232 2345
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKAD 162 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~D 162 (333)
.+.|+|+||+++|.......+..+|++|+|+|+.+...-+. ..++..+... ++| +|++.||+|
T Consensus 145 ~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~---------------gi~~iIvvvNK~D 208 (478)
T PLN03126 145 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---------------GVPNMVVFLNKQD 208 (478)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---------------CCCeEEEEEeccc
Confidence 78999999999997777777889999999999987654333 3344444444 577 788999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
+.+.+ .. .+.+.+++..+.+..|+.. .++|++. +||.+|.++
T Consensus 209 l~~~~--~~-~~~i~~~i~~~l~~~g~~~--~~~~~vp---------~Sa~~g~n~ 250 (478)
T PLN03126 209 QVDDE--EL-LELVELEVRELLSSYEFPG--DDIPIIS---------GSALLALEA 250 (478)
T ss_pred ccCHH--HH-HHHHHHHHHHHHHhcCCCc--CcceEEE---------EEccccccc
Confidence 97532 11 1222345666666665431 2367777 999988543
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-13 Score=125.11 Aligned_cols=95 Identities=21% Similarity=0.199 Sum_probs=57.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCC------CcccceeEEEEEEEe---CCCCCCCCccCCCCCceEEEEEEeCCCc-
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGSSFSRP------SQTIGCTVGVKHITY---GSSGSSSNSIKGDSERDFFVELWDISGH- 93 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~~~~~~------~~t~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~l~i~Dt~G~- 93 (333)
|+|||.+|||||||+++|++..+.... .+++|..+....+.. +....-......+..+.+.++||||+|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999987653222 233333222111000 0000000000011124577999999996
Q ss_pred ---hhhhhhHHhh---ccCCcEEEEEEECCC
Q 019959 94 ---ERYKDCRSIL---YSQINGVIFVHDLSQ 118 (333)
Q Consensus 94 ---e~~~~~~~~~---~~~ad~vIlV~D~s~ 118 (333)
+++..+...+ +++||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5566665554 889999999999973
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.2e-13 Score=128.24 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=99.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS--------------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
...++|+++|..++|||||+++|++..-.. .....-|.+.......+. .....
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-------------~~~~~ 76 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-------------TENRH 76 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-------------cCCeE
Confidence 345899999999999999999999641100 001112333333333332 23456
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADV 163 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl 163 (333)
+.|.||||+.+|.......+..+|++++|+|+.....-+ ....+..+... ++| +|+|.||+|+
T Consensus 77 ~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~~---------------g~~~iIvvvNK~D~ 140 (409)
T CHL00071 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQV---------------GVPNIVVFLNKEDQ 140 (409)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---------------CCCEEEEEEEccCC
Confidence 889999999988777777788999999999998754322 22333444443 578 7789999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
.+... ..+.+.+++..+.+..++.. +.+|++. +||++|.|+
T Consensus 141 ~~~~~---~~~~~~~~l~~~l~~~~~~~--~~~~ii~---------~Sa~~g~n~ 181 (409)
T CHL00071 141 VDDEE---LLELVELEVRELLSKYDFPG--DDIPIVS---------GSALLALEA 181 (409)
T ss_pred CCHHH---HHHHHHHHHHHHHHHhCCCC--CcceEEE---------cchhhcccc
Confidence 75321 11112345555656555421 1367777 999999754
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=133.11 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=95.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC-CCC------------C--------------------CcccceeEEEEEEEe
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS-FSR------------P--------------------SQTIGCTVGVKHITY 65 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~------------~--------------------~~t~~~~~~~~~~~~ 65 (333)
...++|+|+|..++|||||+.+|+...- +.. . ...+.++.....+.
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~- 103 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS- 103 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec-
Confidence 4558999999999999999999984321 110 0 01112222222222
Q ss_pred CCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCC
Q 019959 66 GSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASG 145 (333)
Q Consensus 66 ~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~ 145 (333)
.....+.|+||||+++|.......+..+|++|+|+|++....-.....|. .+...+
T Consensus 104 --------------~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~lg--------- 159 (474)
T PRK05124 104 --------------TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLLG--------- 159 (474)
T ss_pred --------------cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHhC---------
Confidence 23457899999999998765555578999999999998653221111221 122221
Q ss_pred CCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHH
Q 019959 146 GPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEA 221 (333)
Q Consensus 146 ~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~ 221 (333)
..++|||+||+|+...+ .-...++.++...+.+..+.. ...+++. +||++|.|+++.
T Consensus 160 -----~~~iIvvvNKiD~~~~~--~~~~~~i~~~l~~~~~~~~~~---~~~~iip---------vSA~~g~ni~~~ 216 (474)
T PRK05124 160 -----IKHLVVAVNKMDLVDYS--EEVFERIREDYLTFAEQLPGN---LDIRFVP---------LSALEGDNVVSQ 216 (474)
T ss_pred -----CCceEEEEEeeccccch--hHHHHHHHHHHHHHHHhcCCC---CCceEEE---------EEeecCCCcccc
Confidence 23689999999997432 111111223333344444421 1356666 999999999764
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=121.41 Aligned_cols=174 Identities=17% Similarity=0.137 Sum_probs=103.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--cccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc--
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPS--QTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH-- 93 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~-- 93 (333)
..+.+.|+|||.||||||||.|.+++.+...... .|..... .-. .......+.|+||||.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i-lgi---------------~ts~eTQlvf~DTPGlvs 132 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI-LGI---------------ITSGETQLVFYDTPGLVS 132 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee-eEE---------------EecCceEEEEecCCcccc
Confidence 4677899999999999999999999887643222 2212111 111 1145678999999991
Q ss_pred ----hhhhhh------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 94 ----ERYKDC------RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 94 ----e~~~~~------~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.++..+ -...+..||+|++|+|+++.....+. ..+..+..+. ++|-|+|.||.|.
T Consensus 133 ~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys--------------~ips~lvmnkid~ 197 (379)
T KOG1423|consen 133 KKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYS--------------KIPSILVMNKIDK 197 (379)
T ss_pred cchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHh--------------cCCceeeccchhc
Confidence 122111 12346689999999999974433222 3444555553 6899999999997
Q ss_pred CCccC------CccCcccHHHHHHHHHHHcCCCC----CCcCCCc--cccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 164 AAKEG------TRGSSGNLVDAARQWVEKQGLLP----SSEELPL--TESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 164 ~~~~~------r~v~~~~~~~~~~~~~~~~~~~~----~~~~~p~--~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
....- .....+++...-.++..++...+ +...|.+ || -+|.+||++|.|++++-+.++.
T Consensus 198 ~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe-----~vF~vSaL~G~GikdlkqyLms 268 (379)
T KOG1423|consen 198 LKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFE-----RVFMVSALYGEGIKDLKQYLMS 268 (379)
T ss_pred chhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccce-----eEEEEecccccCHHHHHHHHHh
Confidence 65310 00111111122334444444333 1001111 22 2445999999888887777654
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.8e-13 Score=122.03 Aligned_cols=113 Identities=16% Similarity=0.262 Sum_probs=78.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC------c------------ccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPS------Q------------TIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~------~------------t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
+|+|+|.+|+|||||+++|+......... . .+++......+.+ ..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~---------------~~~~ 65 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW---------------KGHK 65 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE---------------CCEE
Confidence 48999999999999999998532110000 0 1111111222222 3467
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
+.+|||||+.+|......++..+|++|+|+|+++.........|. .+... ++|+++|+||+|+.
T Consensus 66 i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~---------------~~p~iivvNK~D~~ 129 (268)
T cd04170 66 INLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEA---------------GIPRIIFINKMDRE 129 (268)
T ss_pred EEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHc---------------CCCEEEEEECCccC
Confidence 999999999888887888899999999999999876655444443 33333 58999999999987
Q ss_pred Cc
Q 019959 165 AK 166 (333)
Q Consensus 165 ~~ 166 (333)
..
T Consensus 130 ~~ 131 (268)
T cd04170 130 RA 131 (268)
T ss_pred CC
Confidence 54
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.6e-13 Score=137.17 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=96.7
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCC-CCC------------CC--------------------cccceeEEEEEE
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSS-FSR------------PS--------------------QTIGCTVGVKHI 63 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~------------~~--------------------~t~~~~~~~~~~ 63 (333)
.....++|+|+|.+++|||||+++|+...- +.. .. ..++.+.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 344568999999999999999999995421 110 00 011111111122
Q ss_pred EeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCC
Q 019959 64 TYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLA 143 (333)
Q Consensus 64 ~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~ 143 (333)
. .....+.|+||||+++|.......+..+|++|+|+|++....-+.... +..+...+
T Consensus 100 ~---------------~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~~------- 156 (632)
T PRK05506 100 A---------------TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLLG------- 156 (632)
T ss_pred c---------------cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHhC-------
Confidence 1 234568899999999887655556789999999999986543221112 22222221
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
..++|||.||+|+...+... ..++.++...+.+++++. +++++. +||++|.|+++
T Consensus 157 -------~~~iivvvNK~D~~~~~~~~--~~~i~~~i~~~~~~~~~~----~~~iip---------iSA~~g~ni~~ 211 (632)
T PRK05506 157 -------IRHVVLAVNKMDLVDYDQEV--FDEIVADYRAFAAKLGLH----DVTFIP---------ISALKGDNVVT 211 (632)
T ss_pred -------CCeEEEEEEecccccchhHH--HHHHHHHHHHHHHHcCCC----CccEEE---------EecccCCCccc
Confidence 24788999999997421111 111123344444555542 356666 99999999874
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=131.46 Aligned_cols=262 Identities=19% Similarity=0.254 Sum_probs=172.7
Q ss_pred hccCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeC
Q 019959 11 KELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDI 90 (333)
Q Consensus 11 ~~~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt 90 (333)
+|...+....++|+.|||..++|||+|+++|+.+.|.....+.-| .|. +.+.++ ++...+.+.|.
T Consensus 20 qewtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~k-kE~vv~-------------gqs~lLlirde 84 (749)
T KOG0705|consen 20 QEWTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RFK-KEVVVD-------------GQSHLLLIRDE 84 (749)
T ss_pred cceeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCc-cce-eeEEee-------------ccceEeeeecc
Confidence 344455556789999999999999999999999988776665533 343 333333 67888999999
Q ss_pred CCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 91 SGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 91 ~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+|.... .|..++|++||||.+.+..+|+.+..+..++..+.. ...+|+++||++.=......+.
T Consensus 85 g~~~~a-----Qft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~-----------r~~i~l~lvgtqd~iS~~~~rv 148 (749)
T KOG0705|consen 85 GGHPDA-----QFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRN-----------ISDLPLILVGTQDHISAKRPRV 148 (749)
T ss_pred cCCchh-----hhhhhccceEEEEEeccccCHHHHHHHHhhcccccc-----------cccchHHhhcCcchhhcccccc
Confidence 884332 567899999999999999999999888887765532 2478999999986555444344
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhcccCCCCC-CCCCCCC
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMPAP-NPWSISP 249 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~ 249 (333)
+.. ..+++++.++. .|.||| ++|.+|.+++.+|+.+...++...........+ ......+
T Consensus 149 ~~d----a~~r~l~~~~k------rcsy~e---------t~atyGlnv~rvf~~~~~k~i~~~~~qq~~~~~~~s~~~s~ 209 (749)
T KOG0705|consen 149 ITD----DRARQLSAQMK------RCSYYE---------TCATYGLNVERVFQEVAQKIVQLRKYQQLPASSSKSLPESP 209 (749)
T ss_pred cch----HHHHHHHHhcC------ccceee---------cchhhhhhHHHHHHHHHHHHHHHHhhhhcccccccccccCC
Confidence 443 66666665544 366777 999999999999999998887764433333221 1222222
Q ss_pred CCCCcccccc-----cCCCCccccccCCCCCCCCCCCCCccc----cCCCCCCCCCCCCCCcccCCccccccccCCCccc
Q 019959 250 THKPIQRLDE-----NSSDDDKFYSSGYSSDPYNMLPPLPAQ----RNLTPPPTLYPQQPVSVQENYNLPRFSLTGSQEI 320 (333)
Q Consensus 250 ~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~ 320 (333)
.++.+..... +.+.....| ....++.|+. .....||+...++|+.....+....|.+.++++.
T Consensus 210 ~~s~a~s~vhig~~~ngg~s~~~y--------sss~pstpsisq~d~r~~~~~ta~tpTPv~k~s~R~SnlFts~Kgs~~ 281 (749)
T KOG0705|consen 210 SHSPAGSTVHAGQSRNGGGSLSDY--------SSSIPSTPSTSQEDLRFEVAPTANTPTPVCKQSKRWSNLFTSRKGSDP 281 (749)
T ss_pred ccchhhhhhhhhhcccCCcchhhh--------hccCCCCcchhhhhhccccccccCCCchhhHHHHHHHhhhhcccCCCc
Confidence 2221111110 011111111 1122222221 1345577777888899888889999999999955
Q ss_pred cc--cccccccC
Q 019959 321 SS--SARSKRTD 330 (333)
Q Consensus 321 ~~--~~~~~~~~ 330 (333)
.+ ++...++|
T Consensus 282 dkekk~~e~~ad 293 (749)
T KOG0705|consen 282 DKEKKALENHAD 293 (749)
T ss_pred cccccchhhhhh
Confidence 43 55555554
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=104.52 Aligned_cols=105 Identities=21% Similarity=0.219 Sum_probs=66.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER------ 95 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~------ 95 (333)
+|+|+|.+|||||||+|+|++... .....+..+.......+.++ ...+.|+||||...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~---------------~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN---------------NKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET---------------TEEEEEEESSSCSSSSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec---------------eeeEEEEeCCCCcccchhhH
Confidence 699999999999999999997532 11121222222223444443 34467999999421
Q ss_pred ----hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 96 ----YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 96 ----~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
+.... ..+..+|++|+|+|+++... +....++.++. . +.|+++|.||
T Consensus 66 ~~~~~~~~~-~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-~---------------~~~~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFL-EQISKSDLIIYVVDASNPIT-EDDKNILRELK-N---------------KKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHH-HHHCTESEEEEEEETTSHSH-HHHHHHHHHHH-T---------------TSEEEEEEES
T ss_pred HHHHHHHHH-HHHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-c---------------CCCEEEEEcC
Confidence 11222 23479999999999887422 23334445553 2 6899999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-12 Score=125.26 Aligned_cols=161 Identities=20% Similarity=0.216 Sum_probs=116.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
=|+|+|.--.|||||+..+-+........-.++-.+.-..+.++. +..-.+.|.|||||+.|..|+..
T Consensus 7 vVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~------------~~~~~itFiDTPGHeAFt~mRaR 74 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDV------------IKIPGITFIDTPGHEAFTAMRAR 74 (509)
T ss_pred EEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEecc------------CCCceEEEEcCCcHHHHHHHHhc
Confidence 699999999999999999988777665555555555555555531 12345999999999999999998
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
-..-+|++|+|+|+.+.---+.+.. +..++. .++|++|+.||+|..+.+. +....
T Consensus 75 Ga~vtDIaILVVa~dDGv~pQTiEA-I~hak~---------------a~vP~iVAiNKiDk~~~np---------~~v~~ 129 (509)
T COG0532 75 GASVTDIAILVVAADDGVMPQTIEA-INHAKA---------------AGVPIVVAINKIDKPEANP---------DKVKQ 129 (509)
T ss_pred CCccccEEEEEEEccCCcchhHHHH-HHHHHH---------------CCCCEEEEEecccCCCCCH---------HHHHH
Confidence 8889999999999998543222211 122222 3799999999999986532 44444
Q ss_pred HHHHcCCCC--CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 183 WVEKQGLLP--SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 183 ~~~~~~~~~--~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
-..++|+.+ |..++.+++ +||++|.|++++++.++-..
T Consensus 130 el~~~gl~~E~~gg~v~~Vp---------vSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 130 ELQEYGLVPEEWGGDVIFVP---------VSAKTGEGIDELLELILLLA 169 (509)
T ss_pred HHHHcCCCHhhcCCceEEEE---------eeccCCCCHHHHHHHHHHHH
Confidence 445566643 444566777 99999999999998876544
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-13 Score=121.55 Aligned_cols=168 Identities=15% Similarity=0.262 Sum_probs=99.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh---
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC--- 99 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~--- 99 (333)
||+++|..++||||+.+-+..+-... ....+|.+.....-.+.. ...+.++|||+||+..+...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-dT~~L~~T~~ve~~~v~~------------~~~~~l~iwD~pGq~~~~~~~~~ 67 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-DTLRLEPTIDVEKSHVRF------------LSFLPLNIWDCPGQDDFMENYFN 67 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-GGGG-----SEEEEEEEC------------TTSCEEEEEEE-SSCSTTHTTHT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-hccccCCcCCceEEEEec------------CCCcEEEEEEcCCcccccccccc
Confidence 79999999999999998888664322 222223333233333311 23568999999998765443
Q ss_pred --HHhhccCCcEEEEEEECCCcccHHHH---HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 100 --RSILYSQINGVIFVHDLSQRRTKTSL---QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 100 --~~~~~~~ad~vIlV~D~s~~~S~~~l---~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
....+++++++|+|+|+.+.+-.+.+ ...+..+.+.. +++.+.|..+|+|+..++.+.....
T Consensus 68 ~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-------------p~~~v~vfiHK~D~l~~~~r~~~~~ 134 (232)
T PF04670_consen 68 SQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-------------PNIKVFVFIHKMDLLSEDEREEIFR 134 (232)
T ss_dssp CCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-------------TT-EEEEEEE-CCCS-HHHHHHHHH
T ss_pred ccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-------------CCCeEEEEEeecccCCHHHHHHHHH
Confidence 45678999999999999965544444 44555555553 4889999999999987655555544
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++.+...+.+...+.. .+.|+- ||.... .+.+.+..++...+
T Consensus 135 ~~~~~i~~~~~~~~~~----~~~~~~---------TSI~D~-----Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 135 DIQQRIRDELEDLGIE----DITFFL---------TSIWDE-----SLYEAWSKIVQKLI 176 (232)
T ss_dssp HHHHHHHHHHHHTT-T----SEEEEE---------E-TTST-----HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhcccc----ceEEEe---------ccCcCc-----HHHHHHHHHHHHHc
Confidence 4455555566655532 244555 787763 44445555555443
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=118.82 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=77.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC--C----------------CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS--F----------------SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~--~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
+|+|+|.+|+|||||+++|+...- . .+....+..+.....+.+ ..++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~---------------~~~~ 65 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW---------------KDHR 65 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE---------------CCEE
Confidence 489999999999999999974211 0 001111122222222222 3577
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
+.+|||||+.+|......+++.+|++|+|+|+++...-.. ..++..+... ++|++++.||+|+.
T Consensus 66 i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~---------------~~p~ivviNK~D~~ 129 (270)
T cd01886 66 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY---------------NVPRIAFVNKMDRT 129 (270)
T ss_pred EEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc---------------CCCEEEEEECCCCC
Confidence 9999999999888888888999999999999988653332 2333444443 58999999999987
Q ss_pred Cc
Q 019959 165 AK 166 (333)
Q Consensus 165 ~~ 166 (333)
..
T Consensus 130 ~a 131 (270)
T cd01886 130 GA 131 (270)
T ss_pred CC
Confidence 53
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.5e-13 Score=120.52 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=103.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----hhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----YKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~~~ 98 (333)
.|-+||-||+|||||++++...+-.....+..++....-.+.++ ....+.+-|+||.-+ -+.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yd--------------df~q~tVADiPGiI~GAh~nkG 263 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYD--------------DFSQITVADIPGIIEGAHMNKG 263 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecc--------------ccceeEeccCccccccccccCc
Confidence 57899999999999999999664332222222222222344443 223388999999322 122
Q ss_pred hHHhh---ccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 99 CRSIL---YSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 99 ~~~~~---~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
+-..| +..++.++||+|++.. .-++.++....++..+.. +..+.|.++|+||+|+.+.+
T Consensus 264 lG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek----------~L~~rp~liVaNKiD~~eae----- 328 (366)
T KOG1489|consen 264 LGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK----------GLADRPALIVANKIDLPEAE----- 328 (366)
T ss_pred ccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh----------hhccCceEEEEeccCchhHH-----
Confidence 22233 4579999999999998 778888777777765532 23478999999999996431
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
.+...++++.+.-. -+++ +||++++|++++++.|-
T Consensus 329 ----~~~l~~L~~~lq~~------~V~p---------vsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 329 ----KNLLSSLAKRLQNP------HVVP---------VSAKSGEGLEELLNGLR 363 (366)
T ss_pred ----HHHHHHHHHHcCCC------cEEE---------eeeccccchHHHHHHHh
Confidence 13346677766521 1455 99999988888776653
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=118.55 Aligned_cols=171 Identities=16% Similarity=0.142 Sum_probs=111.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh-
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY- 96 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~- 96 (333)
+.+-.+|++||.|+||||||+++|++........++.+++...-.+.|+ ...++|.|+||.-.-
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~---------------ga~IQild~Pgii~ga 124 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYK---------------GAQIQLLDLPGIIEGA 124 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeec---------------CceEEEEcCcccccCc
Confidence 3455689999999999999999999875544444444555666677765 577999999982111
Q ss_pred ---h---hhHHhhccCCcEEEEEEECCCccc-HHHHHHHHHHHH------------------------------------
Q 019959 97 ---K---DCRSILYSQINGVIFVHDLSQRRT-KTSLQKWAVEIA------------------------------------ 133 (333)
Q Consensus 97 ---~---~~~~~~~~~ad~vIlV~D~s~~~S-~~~l~~~~~~i~------------------------------------ 133 (333)
+ ...-...+.||++|+|.|+..... .+.+...+....
T Consensus 125 s~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~i 204 (365)
T COG1163 125 SSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTV 204 (365)
T ss_pred ccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHH
Confidence 1 112235789999999999987665 333322222210
Q ss_pred -----hcCCCCCCCC-CCC-----------CCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCC
Q 019959 134 -----TSGTFSAPLA-SGG-----------PGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEEL 196 (333)
Q Consensus 134 -----~~~~~~~~~~-~~~-----------~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (333)
++..++|.-. ... .+-.-+|.++|.||+|+... ++...+.+...
T Consensus 205 r~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-----------e~~~~l~~~~~-------- 265 (365)
T COG1163 205 RAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-----------EELERLARKPN-------- 265 (365)
T ss_pred HHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-----------HHHHHHHhccc--------
Confidence 0000000000 000 01124799999999999874 56666666553
Q ss_pred CccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 197 PLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 197 p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++. +||+.+.|++++.+.+++.+---
T Consensus 266 -~v~---------isa~~~~nld~L~e~i~~~L~li 291 (365)
T COG1163 266 -SVP---------ISAKKGINLDELKERIWDVLGLI 291 (365)
T ss_pred -eEE---------EecccCCCHHHHHHHHHHhhCeE
Confidence 333 99999999999999999987553
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=127.58 Aligned_cols=163 Identities=16% Similarity=0.214 Sum_probs=100.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--CCCC-------------------------C--CCcccceeEEEEEEEeCCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--SSFS-------------------------R--PSQTIGCTVGVKHITYGSSG 69 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~-------------------------~--~~~t~~~~~~~~~~~~~~~~ 69 (333)
...++|+++|..++|||||+.+|+.. .... . ....-|.+.......+.
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~--- 81 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE--- 81 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc---
Confidence 34579999999999999999999852 1100 0 00011222222222222
Q ss_pred CCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCccc---H---HHHHHHHHHHHhcCCCCCCCC
Q 019959 70 SSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT---K---TSLQKWAVEIATSGTFSAPLA 143 (333)
Q Consensus 70 ~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S---~---~~l~~~~~~i~~~~~~~~~~~ 143 (333)
.....+.|+||||+++|.......+..+|++|+|+|++.... | ......+..+...
T Consensus 82 ----------~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-------- 143 (446)
T PTZ00141 82 ----------TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-------- 143 (446)
T ss_pred ----------cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--------
Confidence 345789999999999998877777889999999999987531 1 1222222233333
Q ss_pred CCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 144 SGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 144 ~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
.+| +|++.||+|+...+..+-.-.++.++...+....|+.. +++|++. +||.+|.|+.+
T Consensus 144 -------gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~--~~~~~ip---------iSa~~g~ni~~ 203 (446)
T PTZ00141 144 -------GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNP--EKVPFIP---------ISGWQGDNMIE 203 (446)
T ss_pred -------CCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCc--ccceEEE---------eecccCCCccc
Confidence 456 67899999953210011111222355555555555421 2467777 99999999854
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-12 Score=123.40 Aligned_cols=156 Identities=22% Similarity=0.260 Sum_probs=97.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC-------CC-------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS-------FS-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~-------~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
...++|+++|..++|||||+++|++... .. .....-|.+.......+. .....
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-------------~~~~~ 76 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-------------TEKRH 76 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-------------CCCeE
Confidence 4568999999999999999999986310 00 001122333333344443 23456
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEE-EEeeCcCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV-VIGNKADV 163 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pii-vVgNK~Dl 163 (333)
+.|.||||+.+|.......+..+|++++|+|++....-. ...++..+... ++|++ ++.||+|+
T Consensus 77 i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~---------------g~p~iiVvvNK~D~ 140 (396)
T PRK00049 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---------------GVPYIVVFLNKCDM 140 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc---------------CCCEEEEEEeecCC
Confidence 889999999988777777788999999999998754322 22333444443 57865 68999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 217 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~ 217 (333)
.... .. ...+.++...+....++. ..++|++. +||++|.+
T Consensus 141 ~~~~--~~-~~~~~~~i~~~l~~~~~~--~~~~~iv~---------iSa~~g~~ 180 (396)
T PRK00049 141 VDDE--EL-LELVEMEVRELLSKYDFP--GDDTPIIR---------GSALKALE 180 (396)
T ss_pred cchH--HH-HHHHHHHHHHHHHhcCCC--ccCCcEEE---------eecccccC
Confidence 7431 10 011123444444444531 12367777 99998753
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.2e-13 Score=105.81 Aligned_cols=90 Identities=23% Similarity=0.286 Sum_probs=69.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-cccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPS-QTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
+||+++|+.|||||+|+.++....+...+. +|++ +....
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~----------------------------------------~~~~~ 40 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG----------------------------------------IDVYD 40 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh----------------------------------------hhhcc
Confidence 589999999999999999998777754433 3332 22222
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
..+++.++++++||+.++..+++.+ |...+..... .++|+++++||.|+..
T Consensus 41 ~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k------------~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 41 PTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNK------------SDLPILVGGNRDVLEE 91 (124)
T ss_pred ccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCC------------CCCcEEEEeechhhHh
Confidence 3457789999999999999999876 8877765532 3688999999999854
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-13 Score=116.95 Aligned_cols=119 Identities=25% Similarity=0.374 Sum_probs=71.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
.|+|+|++|+|||+|+.+|.++......... .... ...+. ......+.+.|+||+++.+.....
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~------------~~~~~~~~lvD~PGH~rlr~~~~~ 68 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVN------------NSKGKKLRLVDIPGHPRLRSKLLD 68 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGS------------STCGTCECEEEETT-HCCCHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEee------------cCCCCEEEEEECCCcHHHHHHHHH
Confidence 7999999999999999999988554322221 1111 11111 123345899999999998765444
Q ss_pred ---hccCCcEEEEEEECCC-cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 103 ---LYSQINGVIFVHDLSQ-RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 103 ---~~~~ad~vIlV~D~s~-~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
+...+.+||||+|.+. ......+..++..+....... ...+|++|++||.|+...
T Consensus 69 ~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~---------~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 69 ELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQ---------KNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCC---------TT--EEEEEEE-TTSTT-
T ss_pred hhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhc---------cCCCCEEEEEeCcccccc
Confidence 4778999999999974 334455544444443321100 137899999999999865
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-12 Score=124.17 Aligned_cols=118 Identities=25% Similarity=0.291 Sum_probs=78.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC------CC----------CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG------SS----------FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~------~~----------~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (333)
....++|+++|..++|||||+++|++. .. ..+... |.+.......+. ..
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~r--GiTi~~~~~~~~-------------~~ 122 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKAR--GITIATAHVEYE-------------TA 122 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhc--CceeeeeEEEEc-------------CC
Confidence 345689999999999999999999722 10 011112 233333333343 23
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeC
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNK 160 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK 160 (333)
...+.|.||||+.+|.......+..+|++++|+|+++...-+. ...+..+... ++| +|+|.||
T Consensus 123 ~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~---------------gip~iIvviNK 186 (447)
T PLN03127 123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---------------GVPSLVVFLNK 186 (447)
T ss_pred CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---------------CCCeEEEEEEe
Confidence 4578999999999887766666678999999999987543222 2333334433 578 5788999
Q ss_pred cCCCCc
Q 019959 161 ADVAAK 166 (333)
Q Consensus 161 ~Dl~~~ 166 (333)
+|+.+.
T Consensus 187 iDlv~~ 192 (447)
T PLN03127 187 VDVVDD 192 (447)
T ss_pred eccCCH
Confidence 999753
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-12 Score=126.42 Aligned_cols=117 Identities=18% Similarity=0.290 Sum_probs=81.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc-CCCCCC-------------------CCcccceeEEEEEEEeCCCCCCCCccCCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK-GSSFSR-------------------PSQTIGCTVGVKHITYGSSGSSSNSIKGDS 79 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~-~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (333)
+..+|+|||..++|||||+++|+. ...+.. .....|.++....+.+.
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~------------- 76 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP------------- 76 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe-------------
Confidence 345999999999999999999863 211110 00112333433333333
Q ss_pred CceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
...+.++||||||+.+|......++..+|++|+|+|+++... .....++..+... ++|+++++|
T Consensus 77 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~~---------------~~PiivviN 140 (527)
T TIGR00503 77 YRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRLR---------------DTPIFTFMN 140 (527)
T ss_pred eCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHhc---------------CCCEEEEEE
Confidence 346889999999999998877778899999999999987532 2233444433332 689999999
Q ss_pred CcCCCC
Q 019959 160 KADVAA 165 (333)
Q Consensus 160 K~Dl~~ 165 (333)
|+|+..
T Consensus 141 KiD~~~ 146 (527)
T TIGR00503 141 KLDRDI 146 (527)
T ss_pred CccccC
Confidence 999864
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=127.79 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=89.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-C---CCC--------------CcccceeEEEEEEEeCCCCCCCCccCCCCCc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS-F---SRP--------------SQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~-~---~~~--------------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (333)
..-+|+|+|..++|||||+++|+...- . ... ...++++.....+.+ .
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~---------------~ 73 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW---------------K 73 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE---------------C
Confidence 345899999999999999999974211 0 000 112222222333333 3
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+++.+|||||+.+|......+++.+|++|+|+|+++....+....| ..+... ++|+++|+||+
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~---------------~~p~ivviNK~ 137 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY---------------EVPRIAFVNKM 137 (689)
T ss_pred CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc---------------CCCEEEEEECC
Confidence 57899999999998888888889999999999999987665544333 334443 58999999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCC
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLL 190 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~ 190 (333)
|+...+. .+...++...++..
T Consensus 138 D~~~~~~--------~~~~~~i~~~l~~~ 158 (689)
T TIGR00484 138 DKTGANF--------LRVVNQIKQRLGAN 158 (689)
T ss_pred CCCCCCH--------HHHHHHHHHHhCCC
Confidence 9985421 23455555666653
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=121.79 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=102.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCC---CCCCCcccceeEEEEEE---------------EeCCCCCCCCccCCCC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSS---FSRPSQTIGCTVGVKHI---------------TYGSSGSSSNSIKGDS 79 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~---~~~~~~t~~~~~~~~~~---------------~~~~~~~~~~~i~~~~ 79 (333)
....+.|.++|.-..|||||+.+|++-.. ..+-...++.+...... .++. +...+.+....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 109 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGS-SKPDNPPCPGC 109 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCC-Ccccccccccc
Confidence 45678999999999999999999996422 22222221111111111 0110 00000000000
Q ss_pred C----ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE
Q 019959 80 E----RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 154 (333)
Q Consensus 80 ~----~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi 154 (333)
+ ....+.|+|+||+++|.......+..+|++++|+|+++.. .-+.. ..+..+...+ -.++
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl~i~~~lg--------------i~~i 174 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHLAAVEIMK--------------LKHI 174 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHHHHHHHcC--------------CCcE
Confidence 1 1246899999999999777666688999999999999742 22222 2222222221 2368
Q ss_pred EEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 155 VVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 155 ivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
|||.||+|+.+... . .+..++++.+.+... ....|++. +||++|.|++.+++.|.+
T Consensus 175 IVvlNKiDlv~~~~--~--~~~~~ei~~~l~~~~----~~~~~iip---------VSA~~G~nI~~Ll~~L~~ 230 (460)
T PTZ00327 175 IILQNKIDLVKEAQ--A--QDQYEEIRNFVKGTI----ADNAPIIP---------ISAQLKYNIDVVLEYICT 230 (460)
T ss_pred EEEEecccccCHHH--H--HHHHHHHHHHHHhhc----cCCCeEEE---------eeCCCCCCHHHHHHHHHh
Confidence 99999999975321 0 111233333333321 12356777 999999999877777664
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=116.93 Aligned_cols=96 Identities=20% Similarity=0.150 Sum_probs=57.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCC--------Cc-cCCCCCceEEEEEEeCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSS--------NS-IKGDSERDFFVELWDISG 92 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--------~~-i~~~~~~~~~l~i~Dt~G 92 (333)
+||+|||.+|||||||+|+|++..+.....+..+.+...-...+....... .. ........+.++|||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999876643222222222222111110000000 00 000112347799999999
Q ss_pred c----hhhhhhHHhh---ccCCcEEEEEEECC
Q 019959 93 H----ERYKDCRSIL---YSQINGVIFVHDLS 117 (333)
Q Consensus 93 ~----e~~~~~~~~~---~~~ad~vIlV~D~s 117 (333)
. .+...+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 4445555555 78999999999997
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.6e-12 Score=119.87 Aligned_cols=174 Identities=14% Similarity=0.112 Sum_probs=106.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-h---
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-Y--- 96 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-~--- 96 (333)
++|+|+|.||||||||+|.|.+.+. +..+.+..+.|...-.++++ .+.+.|.||+|..+ -
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~---------------G~~v~L~DTAGiRe~~~~~ 333 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN---------------GVPVRLSDTAGIREESNDG 333 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC---------------CeEEEEEeccccccccCCh
Confidence 6999999999999999999997653 34444444455544555543 57899999999443 1
Q ss_pred -----hhhHHhhccCCcEEEEEEEC--CCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 97 -----KDCRSILYSQINGVIFVHDL--SQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 97 -----~~~~~~~~~~ad~vIlV~D~--s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
-......++.+|++++|+|+ ++-++-..+...+......... ..+.+..-+++++.||+|+...- +
T Consensus 334 iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~------~~~~~~~~~~i~~~nk~D~~s~~-~ 406 (531)
T KOG1191|consen 334 IEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVV------IVNKMEKQRIILVANKSDLVSKI-P 406 (531)
T ss_pred hHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEE------EeccccccceEEEechhhccCcc-c
Confidence 11122347799999999999 5554444444455544333211 01122457899999999998651 1
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+... . ...+....|... .-...+ +|+++++|++++.+.+.+.+.+...
T Consensus 407 ~~~~----~-~~~~~~~~~~~~---~~i~~~---------vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 407 EMTK----I-PVVYPSAEGRSV---FPIVVE---------VSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cccC----C-ceeccccccCcc---cceEEE---------eeechhhhHHHHHHHHHHHHHHhhc
Confidence 1110 0 000111111100 012333 8999998888888888777766543
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-11 Score=112.25 Aligned_cols=164 Identities=18% Similarity=0.112 Sum_probs=106.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----h
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS--SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----Y 96 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~ 96 (333)
-|-+||-||||||||++.+...+ +..++.+|+-....+..+ . ..-.+.+=|+||.-+ -
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~--~--------------~~~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV--D--------------GGESFVVADIPGLIEGASEG 224 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe--c--------------CCCcEEEecCcccccccccC
Confidence 47799999999999999999653 333344444333333333 2 123478889999211 1
Q ss_pred hhhHHhh---ccCCcEEEEEEECCCccc---HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 97 KDCRSIL---YSQINGVIFVHDLSQRRT---KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 97 ~~~~~~~---~~~ad~vIlV~D~s~~~S---~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
..+-..| +.++.++++|+|++..+- .++......++..+. +...+.|.+||+||+|+....
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~----------~~L~~K~~ivv~NKiD~~~~~--- 291 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS----------PKLAEKPRIVVLNKIDLPLDE--- 291 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhh----------HHhccCceEEEEeccCCCcCH---
Confidence 2222223 457999999999987653 666667777776663 233578999999999965441
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++.+.+++.+.....+ .+++. +||.++.|+++++..+++.+....
T Consensus 292 -------e~~~~~~~~l~~~~~~--~~~~~---------ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 292 -------EELEELKKALAEALGW--EVFYL---------ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred -------HHHHHHHHHHHHhcCC--Cccee---------eehhcccCHHHHHHHHHHHHHHhh
Confidence 4455555544321100 11111 899999999999999988877654
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=111.50 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=104.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
....++|+|+|.+|||||||+|+|+.+....-..-.++.+......... ++ -.+.|||+||-++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~------------~~--~~l~lwDtPG~gdg~ 101 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY------------DG--ENLVLWDTPGLGDGK 101 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc------------cc--cceEEecCCCcccch
Confidence 4456799999999999999999999654433222222222222222111 12 3489999999544
Q ss_pred -----hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc---
Q 019959 96 -----YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE--- 167 (333)
Q Consensus 96 -----~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~--- 167 (333)
++.....++...|.++++.++.|+.---....|.+ +...+ .+.+++++.|.+|....-
T Consensus 102 ~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~d-Vi~~~-------------~~~~~i~~VtQ~D~a~p~~~W 167 (296)
T COG3596 102 DKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRD-VIILG-------------LDKRVLFVVTQADRAEPGREW 167 (296)
T ss_pred hhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHH-HHHhc-------------cCceeEEEEehhhhhcccccc
Confidence 66666677889999999999998753222233433 33332 257999999999986541
Q ss_pred --CCccCcccHH----HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 --GTRGSSGNLV----DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 --~r~v~~~~~~----~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+-......+. +.+..+.+.+.- -.|++. .|++.++|+++++..+++.+-
T Consensus 168 ~~~~~~p~~a~~qfi~~k~~~~~~~~q~-----V~pV~~---------~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 168 DSAGHQPSPAIKQFIEEKAEALGRLFQE-----VKPVVA---------VSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHhh-----cCCeEE---------eccccCccHHHHHHHHHHhCc
Confidence 1111111111 112222111111 135554 788999999999988887664
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.9e-11 Score=107.57 Aligned_cols=180 Identities=21% Similarity=0.209 Sum_probs=116.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
-.|+|+|+.++|||||+.+|.+.+ .+...-|+.|..-.+.-+ +.+...++.+|-..|.-....+..
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de-----------~RDd~tr~~VWiLDGd~~h~~LLk 118 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDE-----------DRDDLTRCNVWILDGDLYHKGLLK 118 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccc-----------cchhhhhcceEEecCchhhhhHHh
Confidence 479999999999999999998764 445555666665555332 334566789999999776666666
Q ss_pred hhccCC----cEEEEEEECCCccc-HHHHHHHHHHHHhcCCCCC-------------------------CC-----C---
Q 019959 102 ILYSQI----NGVIFVHDLSQRRT-KTSLQKWAVEIATSGTFSA-------------------------PL-----A--- 143 (333)
Q Consensus 102 ~~~~~a----d~vIlV~D~s~~~S-~~~l~~~~~~i~~~~~~~~-------------------------~~-----~--- 143 (333)
..+... -.||++.|+++++. ++.+++|..-+.++..... .. .
T Consensus 119 ~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t 198 (473)
T KOG3905|consen 119 FALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTT 198 (473)
T ss_pred hcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccc
Confidence 554422 47889999999976 5678999877665521111 00 0
Q ss_pred -CCC---------------CCCCCCcEEEEeeCcCCC----Ccc-CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccC
Q 019959 144 -SGG---------------PGGLPVPYVVIGNKADVA----AKE-GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESF 202 (333)
Q Consensus 144 -~~~---------------~~~~~~PiivVgNK~Dl~----~~~-~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~ 202 (333)
.++ -.+..+|++||.+|||.. .+. -|.-...-|....+.||-.+|..
T Consensus 199 ~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa------------ 266 (473)
T KOG3905|consen 199 VVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA------------ 266 (473)
T ss_pred cccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce------------
Confidence 000 023579999999999983 211 11111111224466677777753
Q ss_pred CCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 203 PGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 203 ~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.|.+|+|+..|++-+...|.+.+.-
T Consensus 267 ----LiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 267 ----LIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred ----eEEeecccccchHHHHHHHHHHhcC
Confidence 3349999998877777666665543
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=118.07 Aligned_cols=160 Identities=17% Similarity=0.270 Sum_probs=110.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCC-CCCC------------CCcccceeEEEE--EEEeCCCCCCCCccCCCCCceE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGS-SFSR------------PSQTIGCTVGVK--HITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~------------~~~t~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
.+.=++.||-.---|||||..+|+... ++.. -...-|+++..+ .+.|. +++.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~------------~~~~y 125 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYK------------DGQSY 125 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEE------------cCCce
Confidence 444579999999999999999998321 1110 011224444433 33333 16789
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.++++|||||-+|.......+.-||++|+|+|++..-.-+.+..++..+.. +.-+|.|.||+|+
T Consensus 126 lLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----------------~L~iIpVlNKIDl 189 (650)
T KOG0462|consen 126 LLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----------------GLAIIPVLNKIDL 189 (650)
T ss_pred EEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----------------CCeEEEeeeccCC
Confidence 999999999999998888889999999999999998766666555555533 4679999999999
Q ss_pred CCccCCccCcccHHHHHH-HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 164 AAKEGTRGSSGNLVDAAR-QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~-~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
...+. +... ++.+-+++ |...-+.+|||+|.|++++++.+++.
T Consensus 190 p~adp---------e~V~~q~~~lF~~-------------~~~~~i~vSAK~G~~v~~lL~AII~r 233 (650)
T KOG0462|consen 190 PSADP---------ERVENQLFELFDI-------------PPAEVIYVSAKTGLNVEELLEAIIRR 233 (650)
T ss_pred CCCCH---------HHHHHHHHHHhcC-------------CccceEEEEeccCccHHHHHHHHHhh
Confidence 87642 3333 33333443 22334449999999998877666553
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-12 Score=104.81 Aligned_cols=116 Identities=17% Similarity=0.351 Sum_probs=91.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
-|++++|-.|+|||||+|.|..++. ..+.||.-. ....+.+. .++++.+|..|+..-+..+.
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHP--TSE~l~Ig---------------~m~ftt~DLGGH~qArr~wk 82 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHP--TSEELSIG---------------GMTFTTFDLGGHLQARRVWK 82 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccc-cccCCCcCC--ChHHheec---------------CceEEEEccccHHHHHHHHH
Confidence 4999999999999999999987765 345555332 23333332 46789999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.|+..+|++++.+|+-|.+.|.+.+.-++.+..... ..++|+++.|||+|....
T Consensus 83 dyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~-----------la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 83 DYFPQVDAIVYLVDAYDQERFAESKKELDALLSDES-----------LATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHH-----------HhcCcceeecccccCCCc
Confidence 999999999999999999999887766666544421 137999999999999865
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.2e-11 Score=113.92 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=112.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
-|.|+|.---|||||+..|-+........-.|+-.+.-..+.++. | -++.|.||||+..|..|+..
T Consensus 155 VVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~------------G--~~iTFLDTPGHaAF~aMRaR 220 (683)
T KOG1145|consen 155 VVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS------------G--KSITFLDTPGHAAFSAMRAR 220 (683)
T ss_pred eEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC------------C--CEEEEecCCcHHHHHHHHhc
Confidence 688999999999999999998877665555444444455555541 3 56889999999999999998
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
-..-+|++|+|+.+.|.---+.++. +...+. .++|+||+.||+|....+. +.+.+
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~Ea-IkhAk~---------------A~VpiVvAinKiDkp~a~p---------ekv~~ 275 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQTLEA-IKHAKS---------------ANVPIVVAINKIDKPGANP---------EKVKR 275 (683)
T ss_pred cCccccEEEEEEEccCCccHhHHHH-HHHHHh---------------cCCCEEEEEeccCCCCCCH---------HHHHH
Confidence 8889999999999998643332221 111222 3899999999999876532 33332
Q ss_pred HHHHcCCC--CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 183 WVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 183 ~~~~~~~~--~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
-.-..|+. .+-.+++.++ +||++|.|++.+-+.++-...
T Consensus 276 eL~~~gi~~E~~GGdVQvip---------iSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 276 ELLSQGIVVEDLGGDVQVIP---------ISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred HHHHcCccHHHcCCceeEEE---------eecccCCChHHHHHHHHHHHH
Confidence 22233331 1222466777 999999999888777765443
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=105.49 Aligned_cols=132 Identities=21% Similarity=0.258 Sum_probs=83.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
.|+++|..++|||+|+.+|..+.+...... .....-.+.++ .-.+.+.|.||+.+.+.-...
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~g---------------s~~~~LVD~PGH~rlR~kl~e 101 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLG---------------SENVTLVDLPGHSRLRRKLLE 101 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeec---------------CcceEEEeCCCcHHHHHHHHH
Confidence 699999999999999999998854332221 11112222222 122789999999999887777
Q ss_pred hcc---CCcEEEEEEECCC-cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 103 LYS---QINGVIFVHDLSQ-RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 103 ~~~---~ad~vIlV~D~s~-~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++. .+-++|||+|..- ..-...+..++-.+...+.. ....+|++++.||.|+.-....++....++.
T Consensus 102 ~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~---------~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEk 172 (238)
T KOG0090|consen 102 YLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRV---------KKNKPPVLIACNKQDLFTAKTAEKIRQQLEK 172 (238)
T ss_pred HccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhcc---------ccCCCCEEEEecchhhhhcCcHHHHHHHHHH
Confidence 777 7999999999753 22334444444444333210 0136899999999999765433333333333
Q ss_pred HHH
Q 019959 179 AAR 181 (333)
Q Consensus 179 ~~~ 181 (333)
+..
T Consensus 173 Ei~ 175 (238)
T KOG0090|consen 173 EIH 175 (238)
T ss_pred HHH
Confidence 333
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=127.81 Aligned_cols=166 Identities=18% Similarity=0.166 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCC-CCCccC--CCCCceEEEEEEeCCCchhhhhhHHhhccCCc
Q 019959 32 VGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGS-SSNSIK--GDSERDFFVELWDISGHERYKDCRSILYSQIN 108 (333)
Q Consensus 32 vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~i~--~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad 108 (333)
++||||+.++.+........-.++..+....+.++.... +..-+. ...-+.-.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999998877655444444444444444321000 000000 00001123899999999999998888888999
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc------------
Q 019959 109 GVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS------------ 173 (333)
Q Consensus 109 ~vIlV~D~s~---~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~------------ 173 (333)
++|+|+|+++ +.+++.+. .+... ++|+++|+||+|+.... ....
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~~---------------~iPiIVViNKiDL~~~~--~~~~~~~~~~~~~~q~ 610 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQY---------------KTPFVVAANKIDLIPGW--NISEDEPFLLNFNEQD 610 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHHc---------------CCCEEEEEECCCCcccc--ccccchhhhhhhhhhH
Confidence 9999999997 34444443 22222 57999999999996431 1100
Q ss_pred ccHHHHH----HHH---HHHcCCCC--------CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 174 GNLVDAA----RQW---VEKQGLLP--------SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 174 ~~~~~~~----~~~---~~~~~~~~--------~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
....++. .++ ..++|+.. +...+++++ +||++|.|++++++.+..
T Consensus 611 ~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVp---------VSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 611 QHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVP---------VSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEE---------EEcCCCCCHHHHHHHHHH
Confidence 0000111 111 13344321 223466777 999999999998876653
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-11 Score=104.31 Aligned_cols=116 Identities=18% Similarity=0.195 Sum_probs=69.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRP----SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
++|+|+|.+|||||||+|.+++....... ..|..+.. ....+. ...+.++||||-....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~--~~~~~~---------------~~~i~viDTPG~~d~~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQK--ESAVWD---------------GRRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccce--eeEEEC---------------CeEEEEEECcCCCCcc
Confidence 47999999999999999999987543322 22222222 222222 3469999999943221
Q ss_pred --------hh---HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 98 --------DC---RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 98 --------~~---~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.+ ......++|++|+|+|+.+ .+-+. ...+..+.+... ...-.++++|.|+.|....
T Consensus 64 ~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg----------~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 64 VSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFG----------EKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhC----------hHhHhcEEEEEECccccCC
Confidence 11 1123457899999999987 33222 223333333211 0012478899999997643
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-11 Score=122.81 Aligned_cols=109 Identities=23% Similarity=0.313 Sum_probs=76.4
Q ss_pred ECCCCCCHHHHHHHHHcCCCC-CC-----------------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEE
Q 019959 27 VGDSGVGKTSLVNLIVKGSSF-SR-----------------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELW 88 (333)
Q Consensus 27 vG~~~vGKSSLl~~l~~~~~~-~~-----------------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~ 88 (333)
||..++|||||+++|+...-. .. ....+.+......+.+ ..+.+.+|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~---------------~~~~i~li 65 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW---------------KGHKINLI 65 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE---------------CCEEEEEE
Confidence 699999999999999643110 00 0112222222233333 35789999
Q ss_pred eCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 89 DISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 89 Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
||||+.+|......++..+|++|+|+|+++.........|. .+... ++|+++|+||+|+...
T Consensus 66 DtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~~---------------~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 66 DTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEKY---------------GVPRIIFVNKMDRAGA 127 (668)
T ss_pred ECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHHc---------------CCCEEEEEECCCCCCC
Confidence 99999988877778899999999999999887766554443 33333 5899999999998753
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=96.90 Aligned_cols=136 Identities=20% Similarity=0.282 Sum_probs=93.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc----hhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH----ERYKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~----e~~~~ 98 (333)
||++||..|+|||||++.+.+.... +..|..++|..+ -..||||. .++..
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~~d~------------------------~~IDTPGEy~~~~~~Y~ 56 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEFNDK------------------------GDIDTPGEYFEHPRWYH 56 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeeccCc------------------------cccCCchhhhhhhHHHH
Confidence 7999999999999999999877542 333333333111 14599993 22222
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
-.......+|++++|..+++++|.-. ..+... ...|+|-|.+|.||.++.+ ++
T Consensus 57 aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~--------------~~k~vIgvVTK~DLaed~d--------I~ 109 (148)
T COG4917 57 ALITTLQDADVIIYVHAANDPESRFP-----PGFLDI--------------GVKKVIGVVTKADLAEDAD--------IS 109 (148)
T ss_pred HHHHHhhccceeeeeecccCccccCC-----cccccc--------------cccceEEEEecccccchHh--------HH
Confidence 22334678999999999999976211 111111 2457999999999996421 47
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
..++|..+-|.. ++|+ +|+.++.|++++++.|.
T Consensus 110 ~~~~~L~eaGa~------~IF~---------~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 110 LVKRWLREAGAE------PIFE---------TSAVDNQGVEELVDYLA 142 (148)
T ss_pred HHHHHHHHcCCc------ceEE---------EeccCcccHHHHHHHHH
Confidence 788999999964 5666 99999988888877664
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-11 Score=125.01 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=81.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC---------------CCCCC---CCcccceeEEEEEEEeCCCCCCCCccCCCCCc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG---------------SSFSR---PSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~---------------~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (333)
...+|+|+|..++|||||+++|+.. .+... ...|+........+.+. ..
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~-------------~~ 84 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYE-------------GN 84 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeec-------------CC
Confidence 4469999999999999999999842 11110 11233322222222232 45
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.||||||+.+|.......++.+|++|+|+|+.+....+....|.. +... ++|+++|+||+
T Consensus 85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~~---------------~~p~ivviNKi 148 (720)
T TIGR00490 85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALKE---------------NVKPVLFINKV 148 (720)
T ss_pred ceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHHc---------------CCCEEEEEECh
Confidence 7889999999999998888888999999999999988544333333332 2222 57888999999
Q ss_pred CCCCc
Q 019959 162 DVAAK 166 (333)
Q Consensus 162 Dl~~~ 166 (333)
|....
T Consensus 149 D~~~~ 153 (720)
T TIGR00490 149 DRLIN 153 (720)
T ss_pred hcccc
Confidence 98643
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=113.57 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=112.1
Q ss_pred hhhhhhhccCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 5 ERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
.|+|..+....+.-.+.+++.|+|+.++|||.|++.|++..+...+..+....+....+... +....
T Consensus 409 tRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-------------g~~k~ 475 (625)
T KOG1707|consen 409 TRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-------------GQQKY 475 (625)
T ss_pred hhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-------------cccce
Confidence 56777776667778888999999999999999999999988877666666666666666654 45555
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
+.+.|..-. ....+...- ..||+++++||.+++.+|..+...+..-... ..+|+++|++|+|+.
T Consensus 476 LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--------------~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 476 LILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--------------YKIPCLMVATKADLD 539 (625)
T ss_pred EEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc--------------cCCceEEEeeccccc
Confidence 667776643 222222222 5799999999999999999887666554433 279999999999998
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCC
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLP 191 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~ 191 (333)
+...+--. +. .++|.++++.+
T Consensus 540 e~~Q~~~i-----qp-de~~~~~~i~~ 560 (625)
T KOG1707|consen 540 EVPQRYSI-----QP-DEFCRQLGLPP 560 (625)
T ss_pred hhhhccCC-----Ch-HHHHHhcCCCC
Confidence 76432222 33 78999999864
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-11 Score=112.87 Aligned_cols=159 Identities=15% Similarity=0.216 Sum_probs=111.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC---------C--CCcccceeEEE--EEEEeCCCCCCCCccCCCCCceEEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS--SFS---------R--PSQTIGCTVGV--KHITYGSSGSSSNSIKGDSERDFFVEL 87 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~--~~~---------~--~~~t~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~l~i 87 (333)
+..||-.---|||||..|++... +.. . -...-|+++.. ..+.|.. .++..+.+++
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~----------~~g~~Y~lnl 80 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKA----------KDGETYVLNL 80 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEe----------CCCCEEEEEE
Confidence 67888888899999999998431 111 0 01112333333 3333321 3468899999
Q ss_pred EeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 88 WDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 88 ~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
.|||||-+|.-.....+..|.+.++|+|+++.-.-+.+...+..+.. +.-||-|.||+||...+
T Consensus 81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----------------~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----------------NLEIIPVLNKIDLPAAD 144 (603)
T ss_pred cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----------------CcEEEEeeecccCCCCC
Confidence 99999998876666668889999999999998777777777766644 56799999999998764
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
. ....+++..-.|+.. ..-+.+|||+|.|++++++.+++.
T Consensus 145 p--------ervk~eIe~~iGid~-------------~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 145 P--------ERVKQEIEDIIGIDA-------------SDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred H--------HHHHHHHHHHhCCCc-------------chheeEecccCCCHHHHHHHHHhh
Confidence 3 133445555567642 122349999999999988887754
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.5e-11 Score=110.64 Aligned_cols=162 Identities=17% Similarity=0.233 Sum_probs=103.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--CCCC---------------------------CCCcccceeEEEEEEEeCCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--SSFS---------------------------RPSQTIGCTVGVKHITYGSSG 69 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 69 (333)
..+++++++|...+|||||+-+|+.+ .+.. .....-|.++......+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe--- 81 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE--- 81 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee---
Confidence 45789999999999999999999843 1110 001112333434444333
Q ss_pred CCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCccc---HHH---HHHHHHHHHhcCCCCCCCC
Q 019959 70 SSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT---KTS---LQKWAVEIATSGTFSAPLA 143 (333)
Q Consensus 70 ~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S---~~~---l~~~~~~i~~~~~~~~~~~ 143 (333)
...+.+.|.|+||+..|......-..+||+.|||+|+.+.+. |.- .+..+-.....+
T Consensus 82 ----------t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG------- 144 (428)
T COG5256 82 ----------TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG------- 144 (428)
T ss_pred ----------cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-------
Confidence 345679999999999988777777889999999999988742 111 111111122221
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
---+||+.||+|+.+-+ +---.++..+...+.+..|...- +++|+. |||.+|.|+.+
T Consensus 145 -------i~~lIVavNKMD~v~wd--e~rf~ei~~~v~~l~k~~G~~~~--~v~FIP---------iSg~~G~Nl~~ 201 (428)
T COG5256 145 -------IKQLIVAVNKMDLVSWD--EERFEEIVSEVSKLLKMVGYNPK--DVPFIP---------ISGFKGDNLTK 201 (428)
T ss_pred -------CceEEEEEEcccccccC--HHHHHHHHHHHHHHHHHcCCCcc--CCeEEe---------cccccCCcccc
Confidence 12488899999998642 22222334555556666665421 367777 99999998854
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-10 Score=112.07 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=69.9
Q ss_pred EEEEEEeCCCchh-----hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEE
Q 019959 83 FFVELWDISGHER-----YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 157 (333)
Q Consensus 83 ~~l~i~Dt~G~e~-----~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivV 157 (333)
..+.|.||||... ........+..+|+|++|+|+++..+..+. ..+..+.... .+.|+++|
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~-------------K~~PVILV 295 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG-------------QSVPLYVL 295 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC-------------CCCCEEEE
Confidence 3577899999532 222333468899999999999886554442 2344454442 13699999
Q ss_pred eeCcCCCCccCCccCcccHHHHHHHHHHHc---CCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 158 GNKADVAAKEGTRGSSGNLVDAARQWVEKQ---GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 158 gNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~---~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.||+|+.+.. ... .+....+.... ....+. .+|. +||++|.|++++++.+..
T Consensus 296 VNKIDl~dre--edd----kE~Lle~V~~~L~q~~i~f~---eIfP---------VSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 296 VNKFDQQDRN--SDD----ADQVRALISGTLMKGCITPQ---QIFP---------VSSMWGYLANRARHELAN 350 (741)
T ss_pred EEcccCCCcc--cch----HHHHHHHHHHHHHhcCCCCc---eEEE---------EeCCCCCCHHHHHHHHHh
Confidence 9999986431 111 13444443321 111111 2333 999999999988888765
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-10 Score=119.05 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=81.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC--CC-----C-----------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS--SF-----S-----------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~--~~-----~-----------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (333)
...+|+|+|..++|||||+++|+... .. . +....+..+.....+.+ .
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~---------------~ 71 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW---------------K 71 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE---------------C
Confidence 45689999999999999999997421 00 0 01122233333333333 2
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
..++.++||||+.+|.......+..+|++|+|+|+++...-+... .+..+... ++|+|++.||+
T Consensus 72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~~---------------~~p~iv~iNK~ 135 (691)
T PRK12739 72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADKY---------------GVPRIVFVNKM 135 (691)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHHc---------------CCCEEEEEECC
Confidence 567999999999888888888899999999999998875544333 33334343 57999999999
Q ss_pred CCCCc
Q 019959 162 DVAAK 166 (333)
Q Consensus 162 Dl~~~ 166 (333)
|+...
T Consensus 136 D~~~~ 140 (691)
T PRK12739 136 DRIGA 140 (691)
T ss_pred CCCCC
Confidence 99854
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-11 Score=110.35 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=110.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC---------c
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG---------H 93 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G---------~ 93 (333)
-|+|||++|+|||||+++|+..........+.++|.+.....+++ ...+.+.||.| .
T Consensus 180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps--------------g~~vlltDTvGFisdLP~~Lv 245 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS--------------GNFVLLTDTVGFISDLPIQLV 245 (410)
T ss_pred eEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC--------------CcEEEEeechhhhhhCcHHHH
Confidence 799999999999999999997777666677777777777776653 23478899999 3
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
..|..+... ...+|.+|+|.|++.+..-++....+..+...+-.+.| ...-++=|-||+|...... .
T Consensus 246 aAF~ATLee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~p--------kl~~mieVdnkiD~e~~~~---e- 312 (410)
T KOG0410|consen 246 AAFQATLEE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEP--------KLQNMIEVDNKIDYEEDEV---E- 312 (410)
T ss_pred HHHHHHHHH-HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHH--------HHhHHHhhccccccccccC---c-
Confidence 456665554 56899999999999999877777777777776431111 1223566788998875421 1
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++.+- +.+||++|.|+++.++.+-..+...
T Consensus 313 ----------~E~n~~------------------v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 313 ----------EEKNLD------------------VGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred ----------cccCCc------------------cccccccCccHHHHHHHHHHHhhhh
Confidence 112221 1289999998888887776665543
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-10 Score=116.75 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=88.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHc--CCCCC----C------------CCcccceeEEEEEEEeCCCCCCCCccCCCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVK--GSSFS----R------------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~--~~~~~----~------------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (333)
....+|+|+|..++|||||+++|+. +.... . ....++.+.....+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~--------------- 72 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--------------- 72 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE---------------
Confidence 3445999999999999999999973 21100 0 1112222222333333
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
....+.|.||||+.+|.......+..+|++|+|+|+.....-+....|. .+... ++|+|++.||
T Consensus 73 ~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~---------------~~p~iv~vNK 136 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY---------------KVPRIAFVNK 136 (693)
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc---------------CCCEEEEEEC
Confidence 2567999999999888776667788999999999998776555444343 34444 5789999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCC
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
+|+...+. .+...++.+.++.
T Consensus 137 ~D~~~~~~--------~~~~~~i~~~l~~ 157 (693)
T PRK00007 137 MDRTGADF--------YRVVEQIKDRLGA 157 (693)
T ss_pred CCCCCCCH--------HHHHHHHHHHhCC
Confidence 99986421 2344555555664
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.6e-10 Score=107.93 Aligned_cols=180 Identities=22% Similarity=0.283 Sum_probs=114.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
-.|+|+|+.++|||||+.+|.+. +.+..+.+++|..-.+.-+ +.+....+.+|-+.|...+..+..
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~-----------~~dd~~rl~vw~L~g~~~~~~LLk 91 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDE-----------DRDDLARLNVWELDGDPSHSDLLK 91 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccC-----------cCCcCceeeEEEcCCCcchHhHhc
Confidence 48999999999999999998764 3456677887766554322 223456789999998777777776
Q ss_pred hhccC----CcEEEEEEECCCcccH-HHHHHHHHHHHhcCC----------------------CCC--------------
Q 019959 102 ILYSQ----INGVIFVHDLSQRRTK-TSLQKWAVEIATSGT----------------------FSA-------------- 140 (333)
Q Consensus 102 ~~~~~----ad~vIlV~D~s~~~S~-~~l~~~~~~i~~~~~----------------------~~~-------------- 140 (333)
..+.. --+||+|.|++.++.+ +.|..|+..+.++.. +..
T Consensus 92 ~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~ 171 (472)
T PF05783_consen 92 FALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRS 171 (472)
T ss_pred ccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccc
Confidence 65542 3488999999999875 457777765543310 000
Q ss_pred -------------CCCCCC-CCCCCCcEEEEeeCcCCCCccCCcc--C---cccHHHHHHHHHHHcCCCCCCcCCCcccc
Q 019959 141 -------------PLASGG-PGGLPVPYVVIGNKADVAAKEGTRG--S---SGNLVDAARQWVEKQGLLPSSEELPLTES 201 (333)
Q Consensus 141 -------------~~~~~~-~~~~~~PiivVgNK~Dl~~~~~r~v--~---~~~~~~~~~~~~~~~~~~~~~~~~p~~E~ 201 (333)
|++.+- -.+..+||+||++|+|....-.++. . ..-|.+..+.+|-.+|+
T Consensus 172 ~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA------------ 239 (472)
T PF05783_consen 172 PSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA------------ 239 (472)
T ss_pred ccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC------------
Confidence 000000 1223689999999999753211111 1 11122445556666664
Q ss_pred CCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 202 FPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 202 ~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.++||++...|++.++..|++.+..
T Consensus 240 ----sL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 240 ----SLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred ----eEEEeeccccccHHHHHHHHHHHhcc
Confidence 34449999998887777776665544
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-11 Score=107.91 Aligned_cols=95 Identities=14% Similarity=0.181 Sum_probs=73.5
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
++|..+.+.+++++|++++|||++++. +|..+..|+..+... ++|++||+||+||.+. +.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~---------------~i~~vIV~NK~DL~~~--~~~~ 86 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQ---------------NIEPIIVLNKIDLLDD--EDME 86 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEECcccCCC--HHHH
Confidence 778888888999999999999999887 899999999876543 6899999999999754 2222
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
.+.+..+. ..| +++++ +||++|.|++++++.+.
T Consensus 87 ----~~~~~~~~-~~g-------~~v~~---------~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 87 ----KEQLDIYR-NIG-------YQVLM---------TSSKNQDGLKELIEALQ 119 (245)
T ss_pred ----HHHHHHHH-HCC-------CeEEE---------EecCCchhHHHHHhhhc
Confidence 13333333 344 45777 99999988888887665
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=110.09 Aligned_cols=167 Identities=16% Similarity=0.160 Sum_probs=109.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch---
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE--- 94 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e--- 94 (333)
-+..-.++|+|.+|||||||++.++.......+.++.+-.+..-++. -+...+++.||||.-
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~d---------------ykYlrwQViDTPGILD~p 229 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLD---------------YKYLRWQVIDTPGILDRP 229 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhh---------------hheeeeeecCCccccCcc
Confidence 45556899999999999999999987766554444333333333333 345678999999921
Q ss_pred -hhhhhHHh----hcc-CCcEEEEEEECCCcc--cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 95 -RYKDCRSI----LYS-QINGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 95 -~~~~~~~~----~~~-~ad~vIlV~D~s~~~--S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
+-+++... .+. --.+|+++.|+|... |...--+.++.|+.... +.|+|+|.||+|+...
T Consensus 230 lEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-------------NK~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 230 EEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-------------NKVTILVLNKIDAMRP 296 (620)
T ss_pred hhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-------------CCceEEEeecccccCc
Confidence 11111111 111 134789999998764 55555567788877753 8899999999999765
Q ss_pred cCCccCcccHHHHHHHHHH---HcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 167 EGTRGSSGNLVDAARQWVE---KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~---~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++ ++ ++-+++.. .-| ++++++ +|+.+.+||.++-...++.++..+.
T Consensus 297 ed--L~-----~~~~~ll~~~~~~~------~v~v~~---------tS~~~eegVm~Vrt~ACe~LLa~RV 345 (620)
T KOG1490|consen 297 ED--LD-----QKNQELLQTIIDDG------NVKVVQ---------TSCVQEEGVMDVRTTACEALLAARV 345 (620)
T ss_pred cc--cC-----HHHHHHHHHHHhcc------CceEEE---------ecccchhceeeHHHHHHHHHHHHHH
Confidence 32 22 22222222 223 256777 9999999999888888888777654
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.6e-10 Score=101.72 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=108.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC---------------------------------CCCCCcccceeEEEEEEEe
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS---------------------------------FSRPSQTIGCTVGVKHITY 65 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~~ 65 (333)
...++++.+|.---|||||+-||+.+.- ..+..+.|++|+..+.+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 3457999999999999999999986531 0123455666777776654
Q ss_pred CCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHH--HHHHHHhcCCCCCCCC
Q 019959 66 GSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK--WAVEIATSGTFSAPLA 143 (333)
Q Consensus 66 ~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~--~~~~i~~~~~~~~~~~ 143 (333)
...++.|-|||||+.|....-.-...||+.|+++|+-..- .+.-+. ++..+...
T Consensus 84 ---------------~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLGI-------- 139 (431)
T COG2895 84 ---------------EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLGI-------- 139 (431)
T ss_pred ---------------ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhCC--------
Confidence 3567899999999999776666677899999999994432 222211 22222211
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHH
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDK 219 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~ 219 (333)
..++|+.||+||.+- .+-...+|.++-..|+.++|+.. ..|+. +||..|.|+-
T Consensus 140 --------rhvvvAVNKmDLvdy--~e~~F~~I~~dy~~fa~~L~~~~----~~~IP---------iSAl~GDNV~ 192 (431)
T COG2895 140 --------RHVVVAVNKMDLVDY--SEEVFEAIVADYLAFAAQLGLKD----VRFIP---------ISALLGDNVV 192 (431)
T ss_pred --------cEEEEEEeeeccccc--CHHHHHHHHHHHHHHHHHcCCCc----ceEEe---------chhccCCccc
Confidence 347888999999976 33444556677888999999763 34555 9999998873
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-09 Score=97.12 Aligned_cols=125 Identities=19% Similarity=0.136 Sum_probs=72.0
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRP-SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
.....++|+|+|.+|||||||+|++++....... ....+.......... ....+.+|||||-..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~---------------~g~~i~vIDTPGl~~ 91 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV---------------DGFKLNIIDTPGLLE 91 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE---------------CCeEEEEEECCCcCc
Confidence 3556689999999999999999999987543211 111111121112222 235689999999543
Q ss_pred hh-----h--h---HHhhcc--CCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 96 YK-----D--C---RSILYS--QINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 96 ~~-----~--~---~~~~~~--~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
.. . . ...++. ..|++++|..++... .+.. ...+..|.+.... ..-.++++|.||+|
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~----------~i~~~~ivV~T~~d 160 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGP----------SIWRNAIVVLTHAA 160 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhCh----------hhHhCEEEEEeCCc
Confidence 31 0 0 112332 578888887666432 2332 2333334332110 01256999999999
Q ss_pred CCCcc
Q 019959 163 VAAKE 167 (333)
Q Consensus 163 l~~~~ 167 (333)
....+
T Consensus 161 ~~~p~ 165 (249)
T cd01853 161 SSPPD 165 (249)
T ss_pred cCCCC
Confidence 87553
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9e-10 Score=116.15 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=89.5
Q ss_pred CchhhhhhhhhccCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCC-CC----------CC---cccceeEE--EEEEE
Q 019959 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSF-SR----------PS---QTIGCTVG--VKHIT 64 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~----------~~---~t~~~~~~--~~~~~ 64 (333)
|.|..++.-.+-++. +...-+|+|+|..++|||||+.+|+...-. .. +. ..-|.++. ...+.
T Consensus 1 ~~~~~~~~~~~~~~~--~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~ 78 (843)
T PLN00116 1 MVKFTAEELRRIMDK--KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLY 78 (843)
T ss_pred CCccCHHHHHHHhhC--ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEE
Confidence 555555433333332 334559999999999999999999843210 00 00 00111111 11222
Q ss_pred eCCCCCCCCccC-CCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCC
Q 019959 65 YGSSGSSSNSIK-GDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLA 143 (333)
Q Consensus 65 ~~~~~~~~~~i~-~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~ 143 (333)
+......-.+.. ...+..+.++|+||||+.+|.......++.+|++|+|+|+...........|.. +...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~~-------- 149 (843)
T PLN00116 79 YEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALGE-------- 149 (843)
T ss_pred eecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHHC--------
Confidence 210000000000 012346889999999999998888888899999999999998765444444543 3333
Q ss_pred CCCCCCCCCcEEEEeeCcCCCC
Q 019959 144 SGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
++|+|++.||+|+..
T Consensus 150 -------~~p~i~~iNK~D~~~ 164 (843)
T PLN00116 150 -------RIRPVLTVNKMDRCF 164 (843)
T ss_pred -------CCCEEEEEECCcccc
Confidence 689999999999873
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-09 Score=98.50 Aligned_cols=122 Identities=21% Similarity=0.208 Sum_probs=70.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
...++|+|+|.+|||||||+|+|++..... ......+.......... ....+.++||||..+..
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~---------------~G~~l~VIDTPGL~d~~ 100 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR---------------AGFTLNIIDTPGLIEGG 100 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE---------------CCeEEEEEECCCCCchH
Confidence 456899999999999999999999875421 11111122211111112 24679999999955432
Q ss_pred hh-------HHhhc--cCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 98 DC-------RSILY--SQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 98 ~~-------~~~~~--~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.. ...++ ...|++|+|..++... +... ...+..+..... ...-.++|||.|++|....
T Consensus 101 ~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG----------~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 101 YINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFG----------KDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhh----------hhhhccEEEEEECCccCCC
Confidence 21 11112 2699999996655321 2211 223333433321 0113468999999997754
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=102.45 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=58.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCC--CCccCCCCCceEEEEEEeCCCchh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSS--SNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
....++|+|||.+|||||||+|+|++........+..+.+...-.+.+....-. .............+.++||||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 455679999999999999999999877654443343343333333433210000 000000001134589999999321
Q ss_pred ----hhhhH---HhhccCCcEEEEEEECC
Q 019959 96 ----YKDCR---SILYSQINGVIFVHDLS 117 (333)
Q Consensus 96 ----~~~~~---~~~~~~ad~vIlV~D~s 117 (333)
...+. ...++.+|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 11222 22367899999999984
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=102.72 Aligned_cols=168 Identities=17% Similarity=0.228 Sum_probs=113.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC------------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS--SFS------------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELW 88 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~--~~~------------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~ 88 (333)
+|+||-.---|||||+..|+... |.. .-...-|+++..|...+. -+.++++|.
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~-------------~~~~~INIv 73 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN-------------YNGTRINIV 73 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee-------------cCCeEEEEe
Confidence 79999999999999999999542 221 111223555555554443 456889999
Q ss_pred eCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 89 DISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 89 Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
|||||.+|.......+.-.|++++++|+....- -+.+..+...... +.+-|||.||+|......
T Consensus 74 DTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-PQTrFVlkKAl~~---------------gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 74 DTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALAL---------------GLKPIVVINKIDRPDARP 137 (603)
T ss_pred cCCCcCCccchhhhhhhhcceEEEEEEcccCCC-CchhhhHHHHHHc---------------CCCcEEEEeCCCCCCCCH
Confidence 999999999999899999999999999987532 1122333333343 456677889999987643
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC------HHHHHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY------DKEAVMKFFRMLIRRR 233 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~------v~~~~~~l~~~l~~~~ 233 (333)
..| ++++-.+.-.++...---+.|++. .||+.|.- -.+.+.-||+.++++.
T Consensus 138 ~~V-----vd~vfDLf~~L~A~deQLdFPivY---------AS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 138 DEV-----VDEVFDLFVELGATDEQLDFPIVY---------ASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred HHH-----HHHHHHHHHHhCCChhhCCCcEEE---------eeccCceeccCccccccchhHHHHHHHHhC
Confidence 333 366666666666532222356655 88888752 2345777777777653
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=99.50 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=45.2
Q ss_pred EEEEEeCCCchhhh---hhHHhh---ccC--CcEEEEEEECCCcccHHHH--HHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 019959 84 FVELWDISGHERYK---DCRSIL---YSQ--INGVIFVHDLSQRRTKTSL--QKWAVEIATSGTFSAPLASGGPGGLPVP 153 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~---~~~~~~---~~~--ad~vIlV~D~s~~~S~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~P 153 (333)
.+.+||+||+.++. .....+ +.. ++++++|+|++...+...+ ..|+....... .++|
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-------------~~~~ 164 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-------------LGLP 164 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-------------cCCC
Confidence 58899999976642 232222 222 8999999999765543332 23333322221 2689
Q ss_pred EEEEeeCcCCCCc
Q 019959 154 YVVIGNKADVAAK 166 (333)
Q Consensus 154 iivVgNK~Dl~~~ 166 (333)
+++|+||+|+...
T Consensus 165 ~i~v~nK~D~~~~ 177 (253)
T PRK13768 165 QIPVLNKADLLSE 177 (253)
T ss_pred EEEEEEhHhhcCc
Confidence 9999999999865
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-09 Score=99.07 Aligned_cols=135 Identities=14% Similarity=0.199 Sum_probs=85.0
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCc----------ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR----------RTKTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~----------~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
..+.+.+||++|+...+..|..++.++++||+|+|+++- ..+.+....+..+.....+ .
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~-----------~ 227 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF-----------A 227 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc-----------c
Confidence 346788999999999999999999999999999999974 2344444455555544322 3
Q ss_pred CCcEEEEeeCcCCCCccCCc-----------cCcccHHHHHHHHHHHcCCCCCCc-CCCccccCCCCCceeeeeccCcCH
Q 019959 151 PVPYVVIGNKADVAAKEGTR-----------GSSGNLVDAARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~~~~r~-----------v~~~~~~~~~~~~~~~~~~~~~~~-~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
+.|++|++||.|+..+.-.. ... .-.+.+..+....-...... +-+++- ..++|..-.++
T Consensus 228 ~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~-~~~~~~~~~i~~~F~~~~~~~~~~~~~-------~~t~a~Dt~~i 299 (317)
T cd00066 228 NTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPP-NDYEEAAKFIRKKFLDLNRNPNKEIYP-------HFTCATDTENI 299 (317)
T ss_pred CCCEEEEccChHHHHHhhcCCCccccCCCCCCCC-CCHHHHHHHHHHHHHHhhcCCCCeEEE-------EeccccchHHH
Confidence 78999999999975432110 001 11344444443311100000 011111 12788888888
Q ss_pred HHHHHHHHHHHHHHHh
Q 019959 219 KEAVMKFFRMLIRRRY 234 (333)
Q Consensus 219 ~~~~~~l~~~l~~~~~ 234 (333)
..+|+.+.+.+++..+
T Consensus 300 ~~vf~~v~~~i~~~~l 315 (317)
T cd00066 300 RFVFDAVKDIILQNNL 315 (317)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888887776543
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.8e-10 Score=96.19 Aligned_cols=125 Identities=19% Similarity=0.353 Sum_probs=86.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh-
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC- 99 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~- 99 (333)
-||+++|.+|+|||||--.+..+... ....++.++|+...++.+- .+..+.+||.+|++.+...
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl--------------Gnl~LnlwDcGgqe~fmen~ 70 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL--------------GNLVLNLWDCGGQEEFMENY 70 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh--------------hhheeehhccCCcHHHHHHH
Confidence 38999999999999987666644221 1223333445666665553 2467999999999865432
Q ss_pred ----HHhhccCCcEEEEEEECCCcccHHHH---HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 100 ----RSILYSQINGVIFVHDLSQRRTKTSL---QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 100 ----~~~~~~~ad~vIlV~D~s~~~S~~~l---~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
....++..+++|+|||++..+-..++ ++.++.+.++. +...+++...|+||...+.+++.
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-------------P~AkiF~l~hKmDLv~~d~r~~i 137 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-------------PEAKIFCLLHKMDLVQEDARELI 137 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-------------CcceEEEEEeechhcccchHHHH
Confidence 33467899999999999988644444 44555555553 46788899999999987666655
Q ss_pred c
Q 019959 173 S 173 (333)
Q Consensus 173 ~ 173 (333)
.
T Consensus 138 f 138 (295)
T KOG3886|consen 138 F 138 (295)
T ss_pred H
Confidence 4
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-09 Score=95.74 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=24.6
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHH
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
.++......-|+|||-.|+|||||++||.
T Consensus 12 a~~~~~~p~~ilVvGMAGSGKTTF~QrL~ 40 (366)
T KOG1532|consen 12 ASGAIQRPVIILVVGMAGSGKTTFMQRLN 40 (366)
T ss_pred ccccccCCcEEEEEecCCCCchhHHHHHH
Confidence 34556667789999999999999999997
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.7e-09 Score=93.12 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=68.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.....|+|+|.+|+|||||++.+++..-........|. + .+.. ....++.++||+|.- ..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~~--------------~~~~~i~~vDtPg~~--~~ 96 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVVT--------------GKKRRLTFIECPNDI--NA 96 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEEe--------------cCCceEEEEeCCchH--HH
Confidence 33468999999999999999999864211111111111 1 1111 134568899999853 23
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCCc
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAK 166 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~ 166 (333)
+. .....+|++++|+|++........ .++..+... +.| +++|.||+|+...
T Consensus 97 ~l-~~ak~aDvVllviDa~~~~~~~~~-~i~~~l~~~---------------g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 97 MI-DIAKVADLVLLLIDASFGFEMETF-EFLNILQVH---------------GFPRVMGVLTHLDLFKK 148 (225)
T ss_pred HH-HHHHhcCEEEEEEecCcCCCHHHH-HHHHHHHHc---------------CCCeEEEEEeccccCCc
Confidence 32 236789999999999875543332 233334333 456 4569999998743
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.6e-09 Score=98.38 Aligned_cols=134 Identities=15% Similarity=0.210 Sum_probs=85.2
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCc----------ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQR----------RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPV 152 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~----------~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 152 (333)
+.+.+||++|+...+..|..++.++++||+|+|+++- ..+......+..+.....+ .++
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~-----------~~~ 252 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF-----------ANT 252 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc-----------cCC
Confidence 4678999999999999999999999999999999974 2355555556666554332 379
Q ss_pred cEEEEeeCcCCCCccCCccC---------cccHHHHHHHHHHH-cCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHH
Q 019959 153 PYVVIGNKADVAAKEGTRGS---------SGNLVDAARQWVEK-QGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEA 221 (333)
Q Consensus 153 PiivVgNK~Dl~~~~~r~v~---------~~~~~~~~~~~~~~-~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~ 221 (333)
|++|++||.|+..+.-.... ..+-.+.+..+... +-..... .+-+++- ..|+|.+-.++..+
T Consensus 253 piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~-------h~t~a~Dt~~~~~v 325 (342)
T smart00275 253 SIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYH-------HFTCATDTRNIRVV 325 (342)
T ss_pred cEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEE-------EEeeecccHHHHHH
Confidence 99999999998543111000 00012344444332 2111000 0011211 23889988888888
Q ss_pred HHHHHHHHHHHHh
Q 019959 222 VMKFFRMLIRRRY 234 (333)
Q Consensus 222 ~~~l~~~l~~~~~ 234 (333)
|+.+...+++..+
T Consensus 326 ~~~v~~~I~~~~l 338 (342)
T smart00275 326 FDAVKDIILQRNL 338 (342)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-09 Score=112.10 Aligned_cols=125 Identities=20% Similarity=0.244 Sum_probs=80.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC-CCCCC-------------cccceeEE--EEEEEeCCCCCCCCccCCCCCce
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPS-------------QTIGCTVG--VKHITYGSSGSSSNSIKGDSERD 82 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~-------------~t~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~ 82 (333)
...-+|+|+|..++|||||+++|+...- ..... ..-|+++. ...+.+... .-....++.
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~-----~~~~~~~~~ 91 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHD-----LEDGDDKQP 91 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecc-----cccccCCCc
Confidence 3344999999999999999999985311 10000 00011111 112222100 000122456
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
+.+.|+||||+.+|.......++.+|++|+|+|++..-.-.....| ..+... ++|+|++.||+|
T Consensus 92 ~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~---------------~~p~iv~iNK~D 155 (836)
T PTZ00416 92 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE---------------RIRPVLFINKVD 155 (836)
T ss_pred eEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc---------------CCCEEEEEEChh
Confidence 7899999999999988878889999999999999886544433334 344333 579999999999
Q ss_pred CC
Q 019959 163 VA 164 (333)
Q Consensus 163 l~ 164 (333)
+.
T Consensus 156 ~~ 157 (836)
T PTZ00416 156 RA 157 (836)
T ss_pred hh
Confidence 97
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-08 Score=94.91 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=55.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCC--CCccCCCCCceEEEEEEeCCCchh----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSS--SNSIKGDSERDFFVELWDISGHER---- 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~l~i~Dt~G~e~---- 95 (333)
++|+|||.+|||||||+|++++........+..+.+.....+.+...... ....+........+.+.|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 69999999999999999999987643333333333333334443310000 000000001123589999999322
Q ss_pred hhhhHHh---hccCCcEEEEEEECC
Q 019959 96 YKDCRSI---LYSQINGVIFVHDLS 117 (333)
Q Consensus 96 ~~~~~~~---~~~~ad~vIlV~D~s 117 (333)
...+... .++.+|++|+|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1222222 367899999999985
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.4e-08 Score=90.54 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=116.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC----CCC---CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG----SSF---SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDI 90 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~----~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt 90 (333)
++..+++.|+|.-.+|||+|.+++..- .|. ......+++|.....+.+..+. ....+....+.+.|+
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa------rLpq~e~lq~tlvDC 77 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPA------RLPQGEQLQFTLVDC 77 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeeccccc------ccCccccceeEEEeC
Confidence 455689999999999999999999732 222 1223344555555555443211 113466688999999
Q ss_pred CCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 91 SGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 91 ~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
||+...-.....-..-.|..++|+|+.....-+..+. .+.++. ....|||.||+|+..+..|
T Consensus 78 PGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----------------c~klvvvinkid~lpE~qr 140 (522)
T KOG0461|consen 78 PGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----------------CKKLVVVINKIDVLPENQR 140 (522)
T ss_pred CCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----------------ccceEEEEeccccccchhh
Confidence 9986654444333445688899999987543333222 222221 2357888899998876544
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
... +.+.+..+.+-+....+-.+.|++| +||+.|+--++.+.++.+.+..+..
T Consensus 141 ~sk---i~k~~kk~~KtLe~t~f~g~~PI~~---------vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 141 ASK---IEKSAKKVRKTLESTGFDGNSPIVE---------VSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred hhH---HHHHHHHHHHHHHhcCcCCCCceeE---------EecCCCccchhHHHHHHHHHHHhhc
Confidence 322 2344555666555555555678888 9999997777777777766555443
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-08 Score=93.71 Aligned_cols=119 Identities=17% Similarity=0.215 Sum_probs=75.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC----CCCCC----------CCcccc---eeEEE-----EEEEeCCCCCCCCccCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG----SSFSR----------PSQTIG---CTVGV-----KHITYGSSGSSSNSIKG 77 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~----~~~~~----------~~~t~~---~~~~~-----~~~~~~~~~~~~~~i~~ 77 (333)
+.+-|.|+|+.++|||||+|+|.+. ..... .....| .+... +.+.+. .
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~----------~ 85 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEIN----------I 85 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEe----------c
Confidence 4588999999999999999999977 33211 111112 11111 222221 1
Q ss_pred CCCceEEEEEEeCCCc--------hhhhh---------------------hHHhhcc-CCcEEEEEE-ECC----CcccH
Q 019959 78 DSERDFFVELWDISGH--------ERYKD---------------------CRSILYS-QINGVIFVH-DLS----QRRTK 122 (333)
Q Consensus 78 ~~~~~~~l~i~Dt~G~--------e~~~~---------------------~~~~~~~-~ad~vIlV~-D~s----~~~S~ 122 (333)
.++....+.+.||+|- .+-.. -....+. ++|+.|+|. |.+ .++.+
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y 165 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDY 165 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccc
Confidence 3466788999999991 11111 0223344 899999998 764 12233
Q ss_pred HH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 123 TS-LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 123 ~~-l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.. -..|+.++++. ++|+++|.||+|-
T Consensus 166 ~~aEe~~i~eLk~~---------------~kPfiivlN~~dp 192 (492)
T TIGR02836 166 VEAEERVIEELKEL---------------NKPFIILLNSTHP 192 (492)
T ss_pred hHHHHHHHHHHHhc---------------CCCEEEEEECcCC
Confidence 33 35788888887 6899999999994
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=88.74 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=62.1
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE--EEEeeC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY--VVIGNK 160 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi--ivVgNK 160 (333)
....+.++.|..--..... .-+|.+|.|+|+++.++... .+.. .+.+ ++|+||
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~--------------------qi~~ad~~~~~k 146 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGP--------------------GITRSDLLVINK 146 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHh--------------------HhhhccEEEEEh
Confidence 4466778888321111111 12688999999997665321 1111 2333 789999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+|+.+... .. .+...+..+.++. ..++++ +||++|.|++++++.+.+.+
T Consensus 147 ~d~~~~~~--~~----~~~~~~~~~~~~~-----~~~i~~---------~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 147 IDLAPMVG--AD----LGVMERDAKKMRG-----EKPFIF---------TNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred hhcccccc--cc----HHHHHHHHHHhCC-----CCCEEE---------EECCCCCCHHHHHHHHHhhc
Confidence 99984211 11 2444555555432 256777 99999999999998887654
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.7e-09 Score=107.37 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=78.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCC-C-cc-----------cceeEEE--EEEEeCCCCCCCCccCCCCCceE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRP-S-QT-----------IGCTVGV--KHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~-~-~t-----------~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
..-+|+|+|..++|||||+.+|+... .+... . .+ -|.++.. ..+.+. .++..+
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~-----------~~~~~~ 87 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHE-----------YEGKEY 87 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEE-----------ecCCcE
Confidence 34479999999999999999998432 11100 0 00 0111111 111110 013568
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.+.|+||||+.+|.......++.+|++|+|+|+.....-+....|.. +... ++|+|++.||+|+
T Consensus 88 ~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~---------------~~~~iv~iNK~D~ 151 (731)
T PRK07560 88 LINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE---------------RVKPVLFINKVDR 151 (731)
T ss_pred EEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc---------------CCCeEEEEECchh
Confidence 89999999999998888888999999999999987654443344443 2232 4678899999998
Q ss_pred CC
Q 019959 164 AA 165 (333)
Q Consensus 164 ~~ 165 (333)
..
T Consensus 152 ~~ 153 (731)
T PRK07560 152 LI 153 (731)
T ss_pred hc
Confidence 64
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=86.65 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=45.8
Q ss_pred EEEEEeCCCchh----hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 84 FVELWDISGHER----YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 84 ~l~i~Dt~G~e~----~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
.+.|+||||... ...+...++..+|++|+|.++++..+-.....|....... ...+++|.|
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---------------~~~~i~V~n 166 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---------------KSRTIFVLN 166 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---------------CSSEEEEEE
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---------------CCeEEEEEc
Confidence 388999999432 3356667789999999999999977666666666665544 234899999
Q ss_pred Cc
Q 019959 160 KA 161 (333)
Q Consensus 160 K~ 161 (333)
|+
T Consensus 167 k~ 168 (168)
T PF00350_consen 167 KA 168 (168)
T ss_dssp -G
T ss_pred CC
Confidence 85
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.3e-09 Score=97.78 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=79.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSR-PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
.++|+|+|++|+|||||||+|.+-.-... ..+|--+..+.....|..+ ..-.+.+||+||...-.--
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p------------~~pnv~lWDlPG~gt~~f~ 102 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP------------KFPNVTLWDLPGIGTPNFP 102 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S------------S-TTEEEEEE--GGGSS--
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC------------CCCCCeEEeCCCCCCCCCC
Confidence 47999999999999999999975321111 1111111111222222211 1112899999994322111
Q ss_pred H-----HhhccCCcEEEEEEECCCcccHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC--CC---ccC
Q 019959 100 R-----SILYSQINGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV--AA---KEG 168 (333)
Q Consensus 100 ~-----~~~~~~ad~vIlV~D~s~~~S~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl--~~---~~~ 168 (333)
. ..-+...|.+|++.+- .|..... ...++... +.|+.+|-+|+|. .. ...
T Consensus 103 ~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~~---------------gK~fyfVRTKvD~Dl~~~~~~~p 163 (376)
T PF05049_consen 103 PEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQRM---------------GKKFYFVRTKVDSDLYNERRRKP 163 (376)
T ss_dssp HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHHT---------------T-EEEEEE--HHHHHHHHHCC-S
T ss_pred HHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHHc---------------CCcEEEEEecccccHhhhhccCC
Confidence 1 1225578998887753 3444333 34556665 5799999999996 11 122
Q ss_pred CccCcccHHHHHHHHHHH----cCCCCCCcCCCccccCCCCCceeeeeccC--cCHHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEK----QGLLPSSEELPLTESFPGGGGLIAAAKEA--RYDKEAVMKFFRMLI 230 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~----~~~~~~~~~~p~~E~~~~~~~~~~SAk~g--~~v~~~~~~l~~~l~ 230 (333)
+....+++.+.+++-|.+ .|+. +-++|= +|+.+- +....+.+.+.+.|-
T Consensus 164 ~~f~~e~~L~~IR~~c~~~L~k~gv~----~P~VFL---------VS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 164 RTFNEEKLLQEIRENCLENLQKAGVS----EPQVFL---------VSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp TT--HHTHHHHHHHHHHHHHHCTT-S----S--EEE---------B-TTTTTSTTHHHHHHHHHHHS-
T ss_pred cccCHHHHHHHHHHHHHHHHHHcCCC----cCceEE---------EeCCCcccCChHHHHHHHHHHhH
Confidence 445555555666666554 2332 123333 777643 445556666665543
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=89.64 Aligned_cols=165 Identities=13% Similarity=0.069 Sum_probs=83.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC------------CCCcccceeEEEEEEEeCCCCCCC-------CccCCCCCc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFS------------RPSQTIGCTVGVKHITYGSSGSSS-------NSIKGDSER 81 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~ 81 (333)
...|+|+|..|+|||||+++++...... ......-.......+.+.++.-+. ..+......
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~~ 101 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPLD 101 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhccC
Confidence 4589999999999999999998531100 000000000001112222111000 000001111
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.|.+|.|.-... ..+....+..+.|+|+++.+.... .. ..+ ...|.++|+||+
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~~-~~~-----------------~~~a~iiv~NK~ 158 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--KY-PGM-----------------FKEADLIVINKA 158 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--hh-HhH-----------------HhhCCEEEEEHH
Confidence 3356677777720000 011223455667788876543111 11 111 135789999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
|+.... ... .+...+..++.+- ..|+++ +||++|.|++++++.+.+.
T Consensus 159 Dl~~~~--~~~----~~~~~~~l~~~~~-----~~~i~~---------~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 159 DLAEAV--GFD----VEKMKADAKKINP-----EAEIIL---------MSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred Hccccc--hhh----HHHHHHHHHHhCC-----CCCEEE---------EECCCCCCHHHHHHHHHHh
Confidence 997531 111 1233333444331 256777 9999999999999888764
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-08 Score=99.29 Aligned_cols=186 Identities=17% Similarity=0.133 Sum_probs=108.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCC----CCcccceeEEEEEEEeCCCCCCCCccCCCCC---ceEEEEEEeC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSR----PSQTIGCTVGVKHITYGSSGSSSNSIKGDSE---RDFFVELWDI 90 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~l~i~Dt 90 (333)
..+..-|||+|.-..|||-|+..+-+..+... ..+.||.+|....-... --..+..+.. +.--+.++||
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e----~tk~~~~~~K~~~kvPg~lvIdt 547 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIRE----KTKELKKDAKKRLKVPGLLVIDT 547 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHH----HHHHHHhhhhhhcCCCeeEEecC
Confidence 34445799999999999999999986544332 23344544443220000 0000000000 0112788999
Q ss_pred CCchhhhhhHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 91 SGHERYKDCRSILYSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 91 ~G~e~~~~~~~~~~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
||++.|..++.....-||.+|+|+|+... .+.+.+. .++. .+.|+||++||+|....-
T Consensus 548 pghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR~---------------rktpFivALNKiDRLYgw 608 (1064)
T KOG1144|consen 548 PGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLRM---------------RKTPFIVALNKIDRLYGW 608 (1064)
T ss_pred CCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHHh---------------cCCCeEEeehhhhhhccc
Confidence 99999999999999999999999999764 3444332 2222 278999999999976431
Q ss_pred CCccCcccHH-------------------HHHHHHHHH-cCCCCCCcCC---CccccCCCCCceeeeeccCcCHHHHHHH
Q 019959 168 GTRGSSGNLV-------------------DAARQWVEK-QGLLPSSEEL---PLTESFPGGGGLIAAAKEARYDKEAVMK 224 (333)
Q Consensus 168 ~r~v~~~~~~-------------------~~~~~~~~~-~~~~~~~~~~---p~~E~~~~~~~~~~SAk~g~~v~~~~~~ 224 (333)
. ......+. ....+|+.. ++...|+++- .|+- .+.+||.+|.||.+++-.
T Consensus 609 k-~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vs------iVPTSA~sGeGipdLl~l 681 (1064)
T KOG1144|consen 609 K-SCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVS------IVPTSAISGEGIPDLLLL 681 (1064)
T ss_pred c-cCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEE------eeecccccCCCcHHHHHH
Confidence 1 00000000 112223221 2222222211 1222 234999999999999988
Q ss_pred HHHHHHHHH
Q 019959 225 FFRMLIRRR 233 (333)
Q Consensus 225 l~~~l~~~~ 233 (333)
|++..-..+
T Consensus 682 lv~ltQk~m 690 (1064)
T KOG1144|consen 682 LVQLTQKTM 690 (1064)
T ss_pred HHHHHHHHH
Confidence 887665543
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.4e-08 Score=95.39 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=102.3
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcC--C--------------------CC-------CCCCcccceeEEEEEEEe
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKG--S--------------------SF-------SRPSQTIGCTVGVKHITY 65 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~--~--------------------~~-------~~~~~t~~~~~~~~~~~~ 65 (333)
...+..++.++|+|...+|||||+-+++.. . |. ......-|++...+...+
T Consensus 171 q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 171 QSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred ccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 445567899999999999999999999743 1 00 011112244444444444
Q ss_pred CCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cHH---HHHHHHHHHHhcCCCC
Q 019959 66 GSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TKT---SLQKWAVEIATSGTFS 139 (333)
Q Consensus 66 ~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~~---~l~~~~~~i~~~~~~~ 139 (333)
+ .....+.|.|.||+..|......-...||+.|+|+|++... .|+ .......-++..+
T Consensus 251 e-------------s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--- 314 (603)
T KOG0458|consen 251 E-------------SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--- 314 (603)
T ss_pred e-------------cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC---
Confidence 3 34567999999999999877766778999999999998643 222 1222333333332
Q ss_pred CCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHH-HHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 140 APLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV-EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 140 ~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~-~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
---+||+.||+|+..-+.. -..+|......|. +..| |.| +...++.||+.+|.|+
T Consensus 315 -----------i~qlivaiNKmD~V~Wsq~--RF~eIk~~l~~fL~~~~g---------f~e--s~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 315 -----------ISQLIVAINKMDLVSWSQD--RFEEIKNKLSSFLKESCG---------FKE--SSVKFIPISGLSGENL 370 (603)
T ss_pred -----------cceEEEEeecccccCccHH--HHHHHHHHHHHHHHHhcC---------ccc--CCcceEecccccCCcc
Confidence 2348899999999865321 1122333344444 3344 333 2234445999999887
Q ss_pred H
Q 019959 219 K 219 (333)
Q Consensus 219 ~ 219 (333)
-
T Consensus 371 ~ 371 (603)
T KOG0458|consen 371 I 371 (603)
T ss_pred c
Confidence 3
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-08 Score=87.12 Aligned_cols=114 Identities=24% Similarity=0.230 Sum_probs=63.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRP----SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
++|+|+|.+|+||||++|.+++....... ..|..+.. ....+. ...+.++||||-.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~--~~~~~~---------------g~~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQK--YSGEVD---------------GRQVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EE--EEEEET---------------TEEEEEEE--SSEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccce--eeeeec---------------ceEEEEEeCCCCCCCc
Confidence 58999999999999999999987654332 22323332 222332 36689999999211
Q ss_pred ------hhhh---HHhhccCCcEEEEEEECCCcccHHHH--HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 96 ------YKDC---RSILYSQINGVIFVHDLSQRRTKTSL--QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 96 ------~~~~---~~~~~~~ad~vIlV~D~s~~~S~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
...+ ......+.|+||+|+.++ +-+-... -.++..+-... .-.-+|||.|..|..
T Consensus 64 ~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-------------~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 64 GSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-------------IWKHTIVVFTHADEL 129 (212)
T ss_dssp EEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-------------GGGGEEEEEEEGGGG
T ss_pred ccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-------------HHhHhhHHhhhcccc
Confidence 1111 112345799999999998 3332222 22333332211 123478888888866
Q ss_pred Cc
Q 019959 165 AK 166 (333)
Q Consensus 165 ~~ 166 (333)
..
T Consensus 130 ~~ 131 (212)
T PF04548_consen 130 ED 131 (212)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.8e-08 Score=88.31 Aligned_cols=118 Identities=14% Similarity=0.286 Sum_probs=67.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRP--------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
.++|+|+|.+|+|||||+|.|++....... .......+......+. .++..+.+.|+||+|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~-----------e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELE-----------ENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEE-----------ETCEEEEEEEEEEC-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEec-----------cCCcceEEEEEeCCC
Confidence 589999999999999999999976544332 1111223333333333 236788999999999
Q ss_pred ch------------------hhhhhHHh---------hccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCC
Q 019959 93 HE------------------RYKDCRSI---------LYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLAS 144 (333)
Q Consensus 93 ~e------------------~~~~~~~~---------~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~ 144 (333)
-. .|...... .=.+.|+++++++.+... +-.++ ..+.++..
T Consensus 73 fGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls~---------- 141 (281)
T PF00735_consen 73 FGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLSK---------- 141 (281)
T ss_dssp CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHTT----------
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhcc----------
Confidence 21 11111100 012579999999987532 22222 23333322
Q ss_pred CCCCCCCCcEEEEeeCcCCCCc
Q 019959 145 GGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 145 ~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.+++|-|..|+|....
T Consensus 142 ------~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 142 ------RVNVIPVIAKADTLTP 157 (281)
T ss_dssp ------TSEEEEEESTGGGS-H
T ss_pred ------cccEEeEEecccccCH
Confidence 5789999999998764
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-08 Score=89.79 Aligned_cols=70 Identities=17% Similarity=0.086 Sum_probs=36.7
Q ss_pred EEEEEeCCCchhhhhhHHhhc--------cCCcEEEEEEECCCcccH-HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE
Q 019959 84 FVELWDISGHERYKDCRSILY--------SQINGVIFVHDLSQRRTK-TSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 154 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~--------~~ad~vIlV~D~s~~~S~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi 154 (333)
...|+|||||.++-..+.... ...-++|+++|.....+- ..+..++..+.-... .+.|.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~------------~~lP~ 159 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR------------LELPH 159 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH------------HTSEE
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh------------CCCCE
Confidence 578999999988765544332 345688999998755442 122333332221111 16899
Q ss_pred EEEeeCcCCCC
Q 019959 155 VVIGNKADVAA 165 (333)
Q Consensus 155 ivVgNK~Dl~~ 165 (333)
|.|.||+|+..
T Consensus 160 vnvlsK~Dl~~ 170 (238)
T PF03029_consen 160 VNVLSKIDLLS 170 (238)
T ss_dssp EEEE--GGGS-
T ss_pred EEeeeccCccc
Confidence 99999999987
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-07 Score=92.31 Aligned_cols=124 Identities=18% Similarity=0.139 Sum_probs=74.1
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCC-CCCC--CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRP--SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~--~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
+....++|+|+|.+|||||||+|.+++... .... ..|.. ........+ ...+.|+||||.
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr--~~ei~~~id---------------G~~L~VIDTPGL 176 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS--VQEIEGLVQ---------------GVKIRVIDTPGL 176 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE--EEEEEEEEC---------------CceEEEEECCCC
Confidence 445678999999999999999999998753 3222 11211 111111221 356899999994
Q ss_pred hhhh-------hh---HHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 94 ERYK-------DC---RSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 94 e~~~-------~~---~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.... .+ ...++. .+|+||+|..++.......-..++..|...+.. ..-.-+|||.|..
T Consensus 177 ~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~----------~Iwk~tIVVFThg 246 (763)
T TIGR00993 177 KSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP----------SIWFNAIVTLTHA 246 (763)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH----------HhHcCEEEEEeCC
Confidence 4321 11 112333 589999999886443322223455555544320 0123588999999
Q ss_pred CCCCcc
Q 019959 162 DVAAKE 167 (333)
Q Consensus 162 Dl~~~~ 167 (333)
|....+
T Consensus 247 D~lppd 252 (763)
T TIGR00993 247 ASAPPD 252 (763)
T ss_pred ccCCCC
Confidence 988643
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.5e-08 Score=89.19 Aligned_cols=182 Identities=15% Similarity=0.156 Sum_probs=107.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC---CCCCCCCccccee--EEEEEEEeCCCCC------CC--CccCC-CCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG---SSFSRPSQTIGCT--VGVKHITYGSSGS------SS--NSIKG-DSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~---~~~~~~~~t~~~~--~~~~~~~~~~~~~------~~--~~i~~-~~~~~~~ 84 (333)
...++|.+||.-.-|||||+.+|.+- .+.++....+.+. |....+.....+. +. ...++ ..+-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 56789999999999999999999853 2322222222211 1111111100000 00 01111 2234456
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
+.|.|.||+|-.....-.-..-.|+.|+|++++.+.---+....+..+.-.+ -.-+|+|-||+||.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--------------ik~iiIvQNKIDlV 153 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--------------IKNIIIVQNKIDLV 153 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--------------cceEEEEeccccee
Confidence 8999999999876654443445799999999987543222233333333332 13589999999998
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..+ +... .++++++|.+- .+.++.|.+. +||..+.|++.+++.+.+.+-.
T Consensus 154 ~~E-~AlE---~y~qIk~FvkG----t~Ae~aPIIP---------iSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 154 SRE-RALE---NYEQIKEFVKG----TVAENAPIIP---------ISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred cHH-HHHH---HHHHHHHHhcc----cccCCCceee---------ehhhhccCHHHHHHHHHHhCCC
Confidence 753 1111 13444444432 2334566766 9999999999999888776543
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.3e-08 Score=91.30 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=66.5
Q ss_pred CceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
...+.+.|.||+|...-... ....+|.+++|.+....+....+ ...+.+ +.-++|.|
T Consensus 146 ~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~---k~gi~E-----------------~aDIiVVN 202 (332)
T PRK09435 146 AAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI---KKGIME-----------------LADLIVIN 202 (332)
T ss_pred ccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH---Hhhhhh-----------------hhheEEee
Confidence 34577899999995422211 35579999999764444333332 222222 23479999
Q ss_pred CcCCCCccCCccCcccHHHHHHHHHHHcCCCCC---CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 160 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPS---SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 160 K~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~---~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
|+|+...... .....++...+.+... ....|++. +||+++.|++++++.+.+.+-
T Consensus 203 KaDl~~~~~a-------~~~~~el~~~L~l~~~~~~~w~~pVi~---------vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 203 KADGDNKTAA-------RRAAAEYRSALRLLRPKDPGWQPPVLT---------CSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hhcccchhHH-------HHHHHHHHHHHhcccccccCCCCCEEE---------EECCCCCCHHHHHHHHHHHHH
Confidence 9999864211 1223333334443210 00135655 999999999999999887643
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-07 Score=84.00 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=44.7
Q ss_pred EEEEEEeCCCchh-------------hhhhHHhhcc-CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 019959 83 FFVELWDISGHER-------------YKDCRSILYS-QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPG 148 (333)
Q Consensus 83 ~~l~i~Dt~G~e~-------------~~~~~~~~~~-~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~ 148 (333)
..+.|.||||-.. ...+...|++ ..+++++|+|++..-.-.........+...
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~------------- 191 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ------------- 191 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc-------------
Confidence 3588999999531 2234555677 456999999987543322322334444333
Q ss_pred CCCCcEEEEeeCcCCCCc
Q 019959 149 GLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 149 ~~~~PiivVgNK~Dl~~~ 166 (333)
..++++|.||+|..+.
T Consensus 192 --~~rti~ViTK~D~~~~ 207 (240)
T smart00053 192 --GERTIGVITKLDLMDE 207 (240)
T ss_pred --CCcEEEEEECCCCCCc
Confidence 5799999999999864
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-07 Score=83.43 Aligned_cols=173 Identities=16% Similarity=0.187 Sum_probs=107.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
+.+..+|++||-|.||||||+..++............+++...-.+.|+ ...+++.|.||.-.
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~---------------ga~IQllDLPGIieGA 123 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYN---------------GANIQLLDLPGIIEGA 123 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEec---------------CceEEEecCccccccc
Confidence 3456799999999999999999998543322222222344455666665 34589999999322
Q ss_pred ----hhh-hHHhhccCCcEEEEEEECCCcccHHH-HHHHHHHHHhcCCCCCCCC------CCC-----------------
Q 019959 96 ----YKD-CRSILYSQINGVIFVHDLSQRRTKTS-LQKWAVEIATSGTFSAPLA------SGG----------------- 146 (333)
Q Consensus 96 ----~~~-~~~~~~~~ad~vIlV~D~s~~~S~~~-l~~~~~~i~~~~~~~~~~~------~~~----------------- 146 (333)
.+. ..-...+.||.|++|.|++..+--.. +..-+..+--......|.- .+|
T Consensus 124 sqgkGRGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i 203 (364)
T KOG1486|consen 124 SQGKGRGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLI 203 (364)
T ss_pred ccCCCCCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHH
Confidence 111 11134678999999999998664332 2333333211100000000 000
Q ss_pred ------------------------------CCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCC
Q 019959 147 ------------------------------PGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEEL 196 (333)
Q Consensus 147 ------------------------------~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (333)
...--++++.|-||+|... .++...+|+..+-.
T Consensus 204 ~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs-----------~eevdrlAr~Pnsv------ 266 (364)
T KOG1486|consen 204 YTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVS-----------IEEVDRLARQPNSV------ 266 (364)
T ss_pred HHHHHHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceec-----------HHHHHHHhcCCCcE------
Confidence 0111367888999999764 37788888776532
Q ss_pred CccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 197 PLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 197 p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
.+|+.-..|++.+++.+++.+.--+.
T Consensus 267 ------------ViSC~m~lnld~lle~iWe~l~L~rv 292 (364)
T KOG1486|consen 267 ------------VISCNMKLNLDRLLERIWEELNLVRV 292 (364)
T ss_pred ------------EEEeccccCHHHHHHHHHHHhceEEE
Confidence 28999999999999999998865433
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=88.97 Aligned_cols=131 Identities=18% Similarity=0.278 Sum_probs=90.3
Q ss_pred EEEEECCCCCCHHHHHHHHH--cCC--------------CCCCCCc----ccceeEEEEEEEeCCCCCCCCccCCCCCce
Q 019959 23 RVLVVGDSGVGKTSLVNLIV--KGS--------------SFSRPSQ----TIGCTVGVKHITYGSSGSSSNSIKGDSERD 82 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~--~~~--------------~~~~~~~----t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 82 (333)
..+||-.|-+|||||..+|+ ++- +...... .-|+.+....+.++ ...
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~-------------Y~~ 80 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFD-------------YAD 80 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEec-------------cCC
Confidence 78999999999999999987 221 1111111 12455555555544 457
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
+.++|.|||||++|..-....+..+|..|+|+|+...---+.+ +++.-+ +. .++||+-..||.|
T Consensus 81 ~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVc-rl--------------R~iPI~TFiNKlD 144 (528)
T COG4108 81 CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVC-RL--------------RDIPIFTFINKLD 144 (528)
T ss_pred eEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHH-hh--------------cCCceEEEeeccc
Confidence 8899999999999998888889999999999999876433322 333333 33 2799999999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCC
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLL 190 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~ 190 (333)
....+. .+...++.+.+++.
T Consensus 145 R~~rdP--------~ELLdEiE~~L~i~ 164 (528)
T COG4108 145 REGRDP--------LELLDEIEEELGIQ 164 (528)
T ss_pred cccCCh--------HHHHHHHHHHhCcc
Confidence 876532 35555555666653
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-07 Score=94.08 Aligned_cols=123 Identities=23% Similarity=0.364 Sum_probs=86.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCC---------------cccceeEEEEEEEeCCCCCCCCccCCCCCce
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPS---------------QTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~---------------~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 82 (333)
+.....|+++|.-+.|||+|+..|.......... ..-|+.+...-+++- ...-.++.
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~--------l~D~~~KS 196 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLV--------LSDSKGKS 196 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEE--------EecCcCce
Confidence 5566789999999999999999998654322111 111333322222210 11134788
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
+.+++.||||+-.|.......++.+|++++|+|+...-.+..- ..++...++ +.|+++|.||+|
T Consensus 197 ~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq~---------------~~~i~vviNKiD 260 (971)
T KOG0468|consen 197 YLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQN---------------RLPIVVVINKVD 260 (971)
T ss_pred eeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHhc---------------cCcEEEEEehhH
Confidence 8999999999999998888889999999999999988776653 333333333 689999999999
Q ss_pred CC
Q 019959 163 VA 164 (333)
Q Consensus 163 l~ 164 (333)
..
T Consensus 261 RL 262 (971)
T KOG0468|consen 261 RL 262 (971)
T ss_pred HH
Confidence 64
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-07 Score=86.55 Aligned_cols=111 Identities=14% Similarity=-0.000 Sum_probs=63.3
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
..+.+.|.||+|..... ......+|.++++-+ +.+-+.+......+. ..|.++|.||
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~---~~~~~el~~~~~~l~-----------------~~~~ivv~NK 181 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTI---PGTGDDLQGIKAGLM-----------------EIADIYVVNK 181 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEec---CCccHHHHHHHHHHh-----------------hhccEEEEEc
Confidence 35778999999953211 124567888888843 334455544444332 4678999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCC--CCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~--~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+|+......... ......-...+.- ..+ ..++++ +||+++.|++++++.+.+.+
T Consensus 182 ~Dl~~~~~~~~~----~~~~~~~l~~l~~~~~~~--~~~v~~---------iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 182 ADGEGATNVTIA----RLMLALALEEIRRREDGW--RPPVLT---------TSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred ccccchhHHHHH----HHHHHHHHhhccccccCC--CCCEEE---------EEccCCCCHHHHHHHHHHHH
Confidence 999864210000 0000000011100 001 124566 99999999999999988763
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.1e-07 Score=86.90 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=103.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS---FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
-|+..|.---|||||+..+++..- .+.....++.|........+ +..+.|.|++|++++-..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~---------------d~~~~fIDvpgh~~~i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE---------------DGVMGFIDVPGHPDFISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC---------------CCceEEeeCCCcHHHHHH
Confidence 466778888999999999986532 22333333444444444332 337999999999999877
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
.-.-+...|..++|+|.++.-.-+..+ .+.-+... +++ .++|.||+|+.+.. + +.+
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgE-hL~iLdll---------------gi~~giivltk~D~~d~~--r-----~e~ 123 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGE-HLLILDLL---------------GIKNGIIVLTKADRVDEA--R-----IEQ 123 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHH-HHHHHHhc---------------CCCceEEEEeccccccHH--H-----HHH
Confidence 777788999999999997654333222 22222222 344 58999999998762 1 123
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+++...+. +++.++|. +|+++|.|++++-+.+.+.+
T Consensus 124 ~i~~Il~~l~----l~~~~i~~---------~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 124 KIKQILADLS----LANAKIFK---------TSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred HHHHHHhhcc----cccccccc---------cccccCCCHHHHHHHHHHhh
Confidence 3334433333 23456666 99999999999999998877
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.6e-08 Score=88.54 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=54.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCC--CCCccCCCCCceEEEEEEeCCCchh----hh
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGS--SSNSIKGDSERDFFVELWDISGHER----YK 97 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~i~Dt~G~e~----~~ 97 (333)
|+|||.+|||||||+|++++........+..+.+.....+.+....- -....+........+.++|+||..+ ..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998776444334434444444444431000 0000000001123599999999321 12
Q ss_pred hhHHh---hccCCcEEEEEEECC
Q 019959 98 DCRSI---LYSQINGVIFVHDLS 117 (333)
Q Consensus 98 ~~~~~---~~~~ad~vIlV~D~s 117 (333)
.+... .++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 22222 356899999999974
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=81.25 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=63.8
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+..++..+++.+|++|+|+|+++... .|...+.... .+.|+++|+||+|+.... ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-------------~~~~~ilV~NK~Dl~~~~---~~--- 79 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-------------GNNPVILVGNKIDLLPKD---KN--- 79 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-------------CCCcEEEEEEchhcCCCC---CC---
Confidence 57888889999999999999998642 2333332221 257999999999997532 11
Q ss_pred HHHHHHHHH-----HHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 176 LVDAARQWV-----EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 176 ~~~~~~~~~-----~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+....|. +..++. ..++++ +||++|.|++++++.+.+.+
T Consensus 80 -~~~~~~~~~~~~~~~~~~~----~~~i~~---------vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 80 -LVRIKNWLRAKAAAGLGLK----PKDVIL---------ISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred -HHHHHHHHHHHHHhhcCCC----cccEEE---------EECCCCCCHHHHHHHHHHHh
Confidence 13344444 222221 013555 99999999999988887764
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.5e-07 Score=92.38 Aligned_cols=120 Identities=20% Similarity=0.203 Sum_probs=87.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCC--CC------------CC--CCcccceeEEEEEEEeCCCCCCCCccCCCCCc-
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGS--SF------------SR--PSQTIGCTVGVKHITYGSSGSSSNSIKGDSER- 81 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~--~~------------~~--~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 81 (333)
...-+|.|+|.-.+|||||..+++... .. .. ..+.-|+++....+.+. -+
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~-------------~~~ 74 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLF-------------WKG 74 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEE-------------EcC
Confidence 344589999999999999999998321 10 00 01112444444443332 12
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.++|+|||||-+|.......++-+|++|+|+|+...-..+.-..|.+.... ++|.+++.||+
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----------------~vp~i~fiNKm 138 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----------------GVPRILFVNKM 138 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----------------CCCeEEEEECc
Confidence 58899999999999999988899999999999999988766665667655433 68999999999
Q ss_pred CCCCcc
Q 019959 162 DVAAKE 167 (333)
Q Consensus 162 Dl~~~~ 167 (333)
|....+
T Consensus 139 DR~~a~ 144 (697)
T COG0480 139 DRLGAD 144 (697)
T ss_pred cccccC
Confidence 987654
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=87.37 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=64.4
Q ss_pred hhhHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
..+.+..+.++|++++|+|+.++. .+..+..|+..+... ++|+|||+||+||...
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~---------------~ip~ILVlNK~DLv~~--------- 135 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAEST---------------GLEIVLCLNKADLVSP--------- 135 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEEchhcCCh---------
Confidence 334444578999999999999876 555678888766433 6899999999999753
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++...|.+.+... .++++. +||+++.|++++++.+..
T Consensus 136 --~~~~~~~~~~~~~----g~~v~~---------iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 136 --TEQQQWQDRLQQW----GYQPLF---------ISVETGIGLEALLEQLRN 172 (352)
T ss_pred --HHHHHHHHHHHhc----CCeEEE---------EEcCCCCCHHHHhhhhcc
Confidence 2234444432111 134555 999999999888877754
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-07 Score=88.20 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=70.9
Q ss_pred chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 93 HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 93 ~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
.++|..+...++..++++++|+|+.+.. ..|..++.+... +.|+++|+||+||... .+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-------------~~piilV~NK~DLl~k---~~~ 108 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-------------GNPVLLVGNKIDLLPK---SVN 108 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-------------CCCEEEEEEchhhCCC---CCC
Confidence 5788889888899999999999997764 346666665532 5799999999999753 222
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
...+.+..+++++++|+.. ..+++ +||++|.|++++++.+.+
T Consensus 109 ~~~~~~~l~~~~k~~g~~~----~~i~~---------vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 109 LSKIKEWMKKRAKELGLKP----VDIIL---------VSAKKGNGIDELLDKIKK 150 (360)
T ss_pred HHHHHHHHHHHHHHcCCCc----CcEEE---------ecCCCCCCHHHHHHHHHH
Confidence 2122233334456666420 12555 999999999999988864
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.5e-07 Score=82.83 Aligned_cols=130 Identities=16% Similarity=0.211 Sum_probs=84.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CcccceeEEEEEEEeCCCCCCCCccCC-----CCCce---------
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRP-SQTIGCTVGVKHITYGSSGSSSNSIKG-----DSERD--------- 82 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~--------- 82 (333)
-..+--|+++|.-..||||+++.|+...|.... .+..+.++....+. |.+...+.| +.+..
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~----G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMH----GDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEe----cCcccccCCceeeecCCCchhhhhhhHH
Confidence 334448999999999999999999998876421 11111223332222 222222322 11111
Q ss_pred ----------------EEEEEEeCCCc-----------hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhc
Q 019959 83 ----------------FFVELWDISGH-----------ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATS 135 (333)
Q Consensus 83 ----------------~~l~i~Dt~G~-----------e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~ 135 (333)
-.+.|+||||. -.|.....-|...+|.||++||.-..+--++....+..++.+
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 15889999992 224455556788999999999998887666666777777666
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 136 GTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 136 ~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.-.+-||.||+|..+.
T Consensus 211 ---------------EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 211 ---------------EDKIRVVLNKADQVDT 226 (532)
T ss_pred ---------------cceeEEEeccccccCH
Confidence 3357788999998754
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.1e-07 Score=75.92 Aligned_cols=93 Identities=20% Similarity=0.155 Sum_probs=58.3
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
+.+.+...+++|++|+|+|++++...... .+...+... +.|+++|+||+|+.... .
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~~---------------~~p~iiv~NK~Dl~~~~--~------ 58 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLEL---------------GKKLLIVLNKADLVPKE--V------ 58 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHhC---------------CCcEEEEEEhHHhCCHH--H------
Confidence 34566677789999999999886543321 222222222 57999999999996431 0
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+....+....+ .+++. +||+++.|++++++.+.+.+
T Consensus 59 ~~~~~~~~~~~~-------~~~~~---------iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 59 LEKWKSIKESEG-------IPVVY---------VSAKERLGTKILRRTIKELA 95 (156)
T ss_pred HHHHHHHHHhCC-------CcEEE---------EEccccccHHHHHHHHHHHH
Confidence 011112222222 35566 99999999988887776554
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.7e-07 Score=83.14 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=63.1
Q ss_pred hhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+.++|++++|+|++++. ++..+..|+..+... ++|+++|+||+||.+.. . ....
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---------------~ip~iIVlNK~DL~~~~--~------~~~~ 130 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---------------GIEPVIVLTKADLLDDE--E------EELE 130 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---------------CCCEEEEEEHHHCCChH--H------HHHH
Confidence 3578999999999999998 888898998877654 68999999999997541 0 0111
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
..+....+ .+++. +||+++.|+++++..+.
T Consensus 131 ~~~~~~~g-------~~v~~---------vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 131 LVEALALG-------YPVLA---------VSAKTGEGLDELREYLK 160 (287)
T ss_pred HHHHHhCC-------CeEEE---------EECCCCccHHHHHhhhc
Confidence 22223334 45666 99999988887776654
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.7e-06 Score=77.45 Aligned_cols=145 Identities=22% Similarity=0.272 Sum_probs=96.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC-------C------CC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG-------S------SF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~-------~------~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
..+++|..||.-.-|||||.-+++.- . +. ......-|+++...++.|. .....
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveye-------------t~~rh 76 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYE-------------TANRH 76 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEe-------------cCCce
Confidence 34679999999999999999988721 1 11 1112234677777788776 23445
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNK 160 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK 160 (333)
....|+||+.+|......-..+.|+.|+|+++++.. +.+++ + ...+. .+| ++++.||
T Consensus 77 yahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi---L-larqv---------------Gvp~ivvflnK 137 (394)
T COG0050 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI---L-LARQV---------------GVPYIVVFLNK 137 (394)
T ss_pred EEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh---h-hhhhc---------------CCcEEEEEEec
Confidence 778999999999766555567899999999999854 44443 1 11222 465 6777999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccc
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTE 200 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E 200 (333)
+|+.++... . +.+..+.+++..++++.. .++|.+-
T Consensus 138 ~Dmvdd~el--l-elVemEvreLLs~y~f~g--d~~Pii~ 172 (394)
T COG0050 138 VDMVDDEEL--L-ELVEMEVRELLSEYGFPG--DDTPIIR 172 (394)
T ss_pred ccccCcHHH--H-HHHHHHHHHHHHHcCCCC--CCcceee
Confidence 999975211 1 111356778888887632 2467766
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.9e-06 Score=79.09 Aligned_cols=134 Identities=14% Similarity=0.175 Sum_probs=84.6
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccH----------HHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTK----------TSLQKWAVEIATSGTFSAPLASGGPGGLPV 152 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~----------~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 152 (333)
..+.++|++||..-+.-|..++.++++||||.+++.-+.. ..-...++.|..+.-|. +.
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~-----------~t 263 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA-----------NT 263 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc-----------cC
Confidence 5688999999988888899999999999999999875431 12234666666665543 78
Q ss_pred cEEEEeeCcCCCCccCCccC---------cccHHHHHHHHHHH-cCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHH
Q 019959 153 PYVVIGNKADVAAKEGTRGS---------SGNLVDAARQWVEK-QGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAV 222 (333)
Q Consensus 153 PiivVgNK~Dl~~~~~r~v~---------~~~~~~~~~~~~~~-~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~ 222 (333)
++||..||.||..+.-..+. .....+++..+... +.-......=++|. -.+.|..-.+|+.+|
T Consensus 264 siiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~-------h~T~AtDT~nv~~vf 336 (354)
T KOG0082|consen 264 SIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYV-------HFTCATDTQNVQFVF 336 (354)
T ss_pred cEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceE-------EEEeeccHHHHHHHH
Confidence 99999999998654211100 00012344443332 11000000001211 126888888889999
Q ss_pred HHHHHHHHHHHh
Q 019959 223 MKFFRMLIRRRY 234 (333)
Q Consensus 223 ~~l~~~l~~~~~ 234 (333)
..+.+.++.+-+
T Consensus 337 ~av~d~Ii~~nl 348 (354)
T KOG0082|consen 337 DAVTDTIIQNNL 348 (354)
T ss_pred HHHHHHHHHHHH
Confidence 998888887654
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.4e-07 Score=83.73 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=60.2
Q ss_pred hccCCcEEEEEEECCCcccHHH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTS-LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~-l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
...++|++|+|+|++++.++.. +..|+..+... ++|+++|+||+||.+.. .. .+...
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~---------------~ip~iIVlNK~DL~~~~--~~-----~~~~~ 134 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN---------------GIKPIIVLNKIDLLDDL--EE-----ARELL 134 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEEhHHcCCCH--HH-----HHHHH
Confidence 3589999999999998876555 57888776543 68999999999996331 10 12233
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l 225 (333)
++.+..+ +++++ +||+++.|++++++.+
T Consensus 135 ~~~~~~g-------~~v~~---------vSA~~g~gi~~L~~~l 162 (298)
T PRK00098 135 ALYRAIG-------YDVLE---------LSAKEGEGLDELKPLL 162 (298)
T ss_pred HHHHHCC-------CeEEE---------EeCCCCccHHHHHhhc
Confidence 3334444 35666 9999998888777665
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.6e-07 Score=80.04 Aligned_cols=167 Identities=17% Similarity=0.143 Sum_probs=93.3
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC--
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRP-SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG-- 92 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G-- 92 (333)
.|..+...++++|.+|||||||+|.++........ .++-|-+.....+.++ -.+.+.|.+|
T Consensus 131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~----------------~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG----------------KSWYEVDLPGYG 194 (320)
T ss_pred CCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc----------------ceEEEEecCCcc
Confidence 44567789999999999999999999865433222 1133444444444442 3478899999
Q ss_pred --------chhhhhhHHhhccC---CcEEEEEEECCCcccH-HH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 93 --------HERYKDCRSILYSQ---INGVIFVHDLSQRRTK-TS-LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 93 --------~e~~~~~~~~~~~~---ad~vIlV~D~s~~~S~-~~-l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
.+++..+...|+.. --.+++..|++-+-.- +. ...|+.+ + ++|+.+|.|
T Consensus 195 ~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge---~---------------~VP~t~vfT 256 (320)
T KOG2486|consen 195 RAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE---N---------------NVPMTSVFT 256 (320)
T ss_pred cccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh---c---------------CCCeEEeee
Confidence 23334444444332 2345556666654221 11 2345443 2 799999999
Q ss_pred CcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 160 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 160 K~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
|||......+..... ...+......+.-..+....|++- +|+.++.|+++++-.+++
T Consensus 257 K~DK~k~~~~~~kKp--~~~i~~~f~~l~~~~f~~~~Pw~~---------~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 257 KCDKQKKVKRTGKKP--GLNIKINFQGLIRGVFLVDLPWIY---------VSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhhhhhhccccccCc--cccceeehhhccccceeccCCcee---------eecccccCceeeeeehhh
Confidence 999875422111110 011111111111111111345444 999999999887766554
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3e-06 Score=73.07 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=59.2
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
..+.|...+|. . ...-.+.-..+.-|+|+|++..+-. ...++|.... -=++|.||.|
T Consensus 97 ~Dll~iEs~GN--L-~~~~sp~L~d~~~v~VidvteGe~~-------------------P~K~gP~i~~-aDllVInK~D 153 (202)
T COG0378 97 LDLLFIESVGN--L-VCPFSPDLGDHLRVVVIDVTEGEDI-------------------PRKGGPGIFK-ADLLVINKTD 153 (202)
T ss_pred CCEEEEecCcc--e-ecccCcchhhceEEEEEECCCCCCC-------------------cccCCCceeE-eeEEEEehHH
Confidence 45666676661 1 1111222234477888888876421 1112333333 3468899999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
|.+.-++. .+...+-+++.+- +.|+++ +|+|+|.|+++.++.+...
T Consensus 154 La~~v~~d------levm~~da~~~np-----~~~ii~---------~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 154 LAPYVGAD------LEVMARDAKEVNP-----EAPIIF---------TNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred hHHHhCcc------HHHHHHHHHHhCC-----CCCEEE---------EeCCCCcCHHHHHHHHHhh
Confidence 98764332 1334444444332 467887 9999999988887766543
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.7e-07 Score=73.13 Aligned_cols=54 Identities=33% Similarity=0.364 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
+++++|.+|||||||+|++++..... .....|.+.....+.++ + .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~-------------~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLT-------------P---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeC-------------C---CEEEEECCCc
Confidence 89999999999999999999876532 22223334444444443 1 3799999994
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-06 Score=82.97 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=57.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCC-CCCCc-cC-CCCCceEEEEEEeCCCc----
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSG-SSSNS-IK-GDSERDFFVELWDISGH---- 93 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~-i~-~~~~~~~~l~i~Dt~G~---- 93 (333)
.+++.|||-||||||||+|+++.........|..+++...-.+.+.... ..-.. .+ ...-....++++|++|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3689999999999999999999776433333333333333333322100 00000 00 11234567999999992
Q ss_pred hhhhhhHHh---hccCCcEEEEEEECCC
Q 019959 94 ERYKDCRSI---LYSQINGVIFVHDLSQ 118 (333)
Q Consensus 94 e~~~~~~~~---~~~~ad~vIlV~D~s~ 118 (333)
.....+-.. -++.+|++++|+|+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 222223222 3678999999999873
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=82.55 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=62.6
Q ss_pred ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHH
Q 019959 104 YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 183 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~ 183 (333)
..++|.+++|++++...++..+..|+..+... ++|++||+||+||.....+ +...++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~---------------~i~~VIVlNK~DL~~~~~~--------~~~~~~ 174 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETL---------------GIEPLIVLNKIDLLDDEGR--------AFVNEQ 174 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhc---------------CCCEEEEEECccCCCcHHH--------HHHHHH
Confidence 35699999999999888999999998866433 6899999999999754210 112222
Q ss_pred H---HHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 184 V---EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 184 ~---~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
. +..| +++++ +||+++.|++++++.+..
T Consensus 175 ~~~y~~~g-------~~v~~---------vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 175 LDIYRNIG-------YRVLM---------VSSHTGEGLEELEAALTG 205 (347)
T ss_pred HHHHHhCC-------CeEEE---------EeCCCCcCHHHHHHHHhh
Confidence 2 2334 45677 999999999888877754
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-06 Score=72.90 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=41.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
....++|+++|.+|||||||+|++++..+. ......+.++....+.++ ..+.+|||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~----------------~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS----------------PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec----------------CCEEEEECCCC
Confidence 445579999999999999999999987653 222233444544444442 23889999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.6e-06 Score=77.05 Aligned_cols=110 Identities=17% Similarity=0.076 Sum_probs=67.1
Q ss_pred CCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEe
Q 019959 79 SERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 158 (333)
Q Consensus 79 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVg 158 (333)
+.-.+.+.|..|.|.-.-.. ....-+|.+++|.=..-.+..+-++.=+.++ -=|+|.
T Consensus 140 dAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------------------aDi~vI 196 (323)
T COG1703 140 DAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------------------ADIIVI 196 (323)
T ss_pred HhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------------------hheeeE
Confidence 34446688889988322211 2244689998887666666655555444443 235778
Q ss_pred eCcCCCCccCCccCcccHHHHHHHHHHHcCCCC--CC---cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 159 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLP--SS---EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 159 NK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~--~~---~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
||.|....+ ...+.+...+.+.. +. ...|.+. |||.+|.|++++++.+.+...
T Consensus 197 NKaD~~~A~----------~a~r~l~~al~~~~~~~~~~~W~ppv~~---------t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 197 NKADRKGAE----------KAARELRSALDLLREVWRENGWRPPVVT---------TSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred eccChhhHH----------HHHHHHHHHHHhhcccccccCCCCceeE---------eeeccCCCHHHHHHHHHHHHH
Confidence 999965431 33444444444332 11 1356777 999999999998888876543
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-06 Score=79.29 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=59.3
Q ss_pred EEEEEEeCCC--chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 83 FFVELWDISG--HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 83 ~~l~i~Dt~G--~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
+.+.|..|.| |.+. ....-+|.+++|.-..-.+..+-++.=+.++ .=|+|.||
T Consensus 122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------------------aDi~vVNK 176 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------------------ADIFVVNK 176 (266)
T ss_dssp -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------------------SEEEEE-
T ss_pred CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------------------ccEEEEeC
Confidence 4466777776 3332 2345699999999887777666555444444 33577899
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCC---CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPS---SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~---~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+|+...+ ...+++...+.+... ....|.+. |||.++.|++++++.+.+.
T Consensus 177 aD~~gA~----------~~~~~l~~~l~l~~~~~~~W~ppV~~---------tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 177 ADRPGAD----------RTVRDLRSMLHLLREREDGWRPPVLK---------TSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp -SHHHHH----------HHHHHHHHHHHHCSTSCTSB--EEEE---------EBTTTTBSHHHHHHHHHHH
T ss_pred CChHHHH----------HHHHHHHHHHhhccccccCCCCCEEE---------EEeCCCCCHHHHHHHHHHH
Confidence 9965431 223333333222110 11246777 9999999999998888764
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.9e-06 Score=70.70 Aligned_cols=56 Identities=27% Similarity=0.265 Sum_probs=37.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
..++|+++|.+|||||||+|+|.+..... ...+.|.+.....+..+ . .+.|.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~--------------~--~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLM--------------K--RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcC--------------C--CEEEEECcC
Confidence 45789999999999999999999764422 12222333333333322 1 278999999
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.9e-06 Score=72.10 Aligned_cols=57 Identities=30% Similarity=0.384 Sum_probs=39.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
...++|+|+|.+|||||||+|++++..... .....|.+.....+.++ -.+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~----------------~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLD----------------KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeC----------------CCEEEEECcC
Confidence 445899999999999999999999765421 12223444444444432 1388999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.1e-06 Score=69.79 Aligned_cols=55 Identities=31% Similarity=0.372 Sum_probs=39.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
..+|+++|.+|||||||+|+|.+... ....++.|.+.....+..+ ..+.+|||||
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~----------------~~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT----------------SKIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC----------------CCEEEEECcC
Confidence 46899999999999999999996543 3445555655443333332 2489999999
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=74.80 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+-|.|+|.+|+|||||++++++.
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988754
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=70.76 Aligned_cols=136 Identities=21% Similarity=0.292 Sum_probs=75.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC---------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFS---------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDIS 91 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~ 91 (333)
.|+|+|||.+|.|||||+|.+....... ....|+.+....-.+. .++...++++.|||
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvie-------------E~gVklkltviDTP 112 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIE-------------EKGVKLKLTVIDTP 112 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeee-------------ecceEEEEEEecCC
Confidence 5799999999999999999998553322 2222333222222222 23677889999999
Q ss_pred Cc------------------hhhhh--------hHHhhcc--CCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCC
Q 019959 92 GH------------------ERYKD--------CRSILYS--QINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPL 142 (333)
Q Consensus 92 G~------------------e~~~~--------~~~~~~~--~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~ 142 (333)
|- +.|.. .+...+. ..+++++.+..+-. ++.-+ -.+++.+.+.
T Consensus 113 GfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v------- 184 (336)
T KOG1547|consen 113 GFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV------- 184 (336)
T ss_pred CcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh-------
Confidence 91 11111 1112222 46788887777643 33322 1233344333
Q ss_pred CCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCC
Q 019959 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190 (333)
Q Consensus 143 ~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~ 190 (333)
+-+|-|.-|+|-..-+.|..- .+.+++-..++++.
T Consensus 185 ---------vNvvPVIakaDtlTleEr~~F----kqrI~~el~~~~i~ 219 (336)
T KOG1547|consen 185 ---------VNVVPVIAKADTLTLEERSAF----KQRIRKELEKHGID 219 (336)
T ss_pred ---------heeeeeEeecccccHHHHHHH----HHHHHHHHHhcCcc
Confidence 457777899997654323211 23444444556654
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.5e-06 Score=76.54 Aligned_cols=59 Identities=25% Similarity=0.370 Sum_probs=41.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
....++|+|+|.+|||||||+|+|++...... ....|.+.....+.++ -.+.|+||||.
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~----------------~~~~l~DtPGi 176 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLG----------------KGLELLDTPGI 176 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeC----------------CcEEEEECCCc
Confidence 34568999999999999999999998754221 2233444444445443 13789999994
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=67.99 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=55.7
Q ss_pred hccCCcEEEEEEECCCccc--HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRT--KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S--~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
.+..+|++++|+|++++.. ...+..++.. .. .+.|+++|.||+|+.++ ++.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~---~~-------------~~~p~ilVlNKiDl~~~-----------~~~ 57 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKK---EK-------------PHKHLIFVLNKCDLVPT-----------WVT 57 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHh---cc-------------CCCCEEEEEEchhcCCH-----------HHH
Confidence 4678999999999998743 2333333332 21 25899999999999754 334
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
..|...+.-. .++. .+.+||+++.|++++++.+.+.
T Consensus 58 ~~~~~~~~~~-----~~~~-------~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 58 ARWVKILSKE-----YPTI-------AFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred HHHHHHHhcC-----CcEE-------EEEeeccccccHHHHHHHHHHH
Confidence 4444444311 1111 1238999999998888777553
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=74.64 Aligned_cols=185 Identities=18% Similarity=0.277 Sum_probs=104.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------cccceeEEEEEEEeCCCCCC--CCccCC----
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPS--------------QTIGCTVGVKHITYGSSGSS--SNSIKG---- 77 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~--~~~i~~---- 77 (333)
.+.++.|.+.|.-..|||||+-.|+.+....... .....++....+-+++...- .+..+.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 5678899999999999999999988654322111 11112222333333221100 000000
Q ss_pred --CCCceEEEEEEeCCCchhhhhhH--HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 019959 78 --DSERDFFVELWDISGHERYKDCR--SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 153 (333)
Q Consensus 78 --~~~~~~~l~i~Dt~G~e~~~~~~--~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P 153 (333)
....+--+.+.||.|+|.|-.+. -.+-++.|-.++|+.+++.-+... +..+--+... .+|
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a~---------------~lP 257 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALAM---------------ELP 257 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhhh---------------cCC
Confidence 11223458899999999986543 334568999999999998765322 1122222222 689
Q ss_pred EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCC------------------cCCCccccCCCCCceeeeeccC
Q 019959 154 YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS------------------EELPLTESFPGGGGLIAAAKEA 215 (333)
Q Consensus 154 iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~------------------~~~p~~E~~~~~~~~~~SAk~g 215 (333)
+|||.+|+|+.+++..+-. .+++..+.+..+-.++. .-.|.|+ +|+.+|
T Consensus 258 viVvvTK~D~~~ddr~~~v----~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~---------tSsVTg 324 (527)
T COG5258 258 VIVVVTKIDMVPDDRFQGV----VEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFY---------TSSVTG 324 (527)
T ss_pred EEEEEEecccCcHHHHHHH----HHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEE---------EecccC
Confidence 9999999999876422211 23343333332211100 0145666 999999
Q ss_pred cCHHHHHHHHHHHHHHH
Q 019959 216 RYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 216 ~~v~~~~~~l~~~l~~~ 232 (333)
.|++ +++++|..+-++
T Consensus 325 ~Gld-lL~e~f~~Lp~r 340 (527)
T COG5258 325 EGLD-LLDEFFLLLPKR 340 (527)
T ss_pred ccHH-HHHHHHHhCCcc
Confidence 8885 444555544333
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.8e-06 Score=76.20 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=66.6
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCC--CCCccCCCCCceEEEEEEeCCCc
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGS--SSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
+.....+|+.|||-+|||||||+|.+++........|..+++...-.+.+..+.= ..............++++|++|.
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 3445778999999999999999999998877666666655555555555432110 00000112245567999999993
Q ss_pred hh----hhhhHHh---hccCCcEEEEEEECCC
Q 019959 94 ER----YKDCRSI---LYSQINGVIFVHDLSQ 118 (333)
Q Consensus 94 e~----~~~~~~~---~~~~ad~vIlV~D~s~ 118 (333)
-+ ...+-.. -++.+|+++.|+++..
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22 2222222 3678999999988754
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-05 Score=75.25 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=97.1
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
..+..+-|+|||++|+|||||+..|...-. ..|+..-....++ ..++...+.+..++ .+.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTv--------------vsgK~RRiTflEcp--~Dl 124 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITV--------------VSGKTRRITFLECP--SDL 124 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEE--------------eecceeEEEEEeCh--HHH
Confidence 345557899999999999999998874311 1111111111122 22677789999998 344
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCccc
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~ 175 (333)
..+.. ..+-||.|++.+|..-.--.+.+ .++.-+..++ .| ++-|++..||....
T Consensus 125 ~~miD-vaKIaDLVlLlIdgnfGfEMETm-EFLnil~~HG---------------mPrvlgV~ThlDlfk~~-------- 179 (1077)
T COG5192 125 HQMID-VAKIADLVLLLIDGNFGFEMETM-EFLNILISHG---------------MPRVLGVVTHLDLFKNP-------- 179 (1077)
T ss_pred HHHHh-HHHhhheeEEEeccccCceehHH-HHHHHHhhcC---------------CCceEEEEeecccccCh--------
Confidence 44443 35679999999998765333333 4556666664 34 67789999998652
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeec-cCcCHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK-EARYDKEAVMKFFRML 229 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk-~g~~v~~~~~~l~~~l 229 (333)
...+...+.+.-. -+.|.++|+.+|..|.. +|..-+.-+-.|.+.+
T Consensus 180 --stLr~~KKrlkhR------fWtEiyqGaKlFylsgV~nGRYpDreilnLsRfi 226 (1077)
T COG5192 180 --STLRSIKKRLKHR------FWTEIYQGAKLFYLSGVENGRYPDREILNLSRFI 226 (1077)
T ss_pred --HHHHHHHHHHhhh------HHHHHcCCceEEEecccccCCCCCHHHHHHHHHH
Confidence 2233333322211 14556678888878866 5665565555555544
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.3e-05 Score=70.74 Aligned_cols=118 Identities=17% Similarity=0.310 Sum_probs=70.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCC----------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEe
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSR----------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWD 89 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~D 89 (333)
..+.|++||..|.|||||+|.|++...... ..+++. +......+. .++..+.+++.|
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~--i~~~~~~l~-----------e~~~~~~l~vID 88 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLE--IKITKAELE-----------EDGFHLNLTVID 88 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceE--EEeeeeeee-----------cCCeEEEEEEec
Confidence 347999999999999999999997643322 122222 323333332 347888999999
Q ss_pred CCCchhh--------------hhhHHhh------------c--cCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCC
Q 019959 90 ISGHERY--------------KDCRSIL------------Y--SQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSA 140 (333)
Q Consensus 90 t~G~e~~--------------~~~~~~~------------~--~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~ 140 (333)
|||-.++ ......| + ...|++++..-.+.. .+..+. .....+..
T Consensus 89 tpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~------ 161 (373)
T COG5019 89 TPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK------ 161 (373)
T ss_pred cCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc------
Confidence 9992111 0011111 1 257888888876643 222221 23333333
Q ss_pred CCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 141 PLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 141 ~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
.+-+|=|..|+|....+
T Consensus 162 ----------~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 162 ----------RVNLIPVIAKADTLTDD 178 (373)
T ss_pred ----------ccCeeeeeeccccCCHH
Confidence 35677788999987653
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.3e-05 Score=72.22 Aligned_cols=116 Identities=15% Similarity=0.286 Sum_probs=70.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC---------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSR---------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDIS 91 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~ 91 (333)
.|.++++|++|.|||||+|.|+...+... ...| ..+......+. .++..+.|++.|||
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t--~~i~~~~~~ie-----------e~g~~l~LtvidtP 87 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKET--VEIESTKVEIE-----------ENGVKLNLTVIDTP 87 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCcccc--ceeeeeeeeec-----------CCCeEEeeEEeccC
Confidence 48999999999999999999987644332 1112 23333333333 34788899999999
Q ss_pred Cch------------------hhhhh-------HHhhcc--CCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCC
Q 019959 92 GHE------------------RYKDC-------RSILYS--QINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLA 143 (333)
Q Consensus 92 G~e------------------~~~~~-------~~~~~~--~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~ 143 (333)
|-. .|... .+..+. ..|++++....+... +..+. .....+.
T Consensus 88 GfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~---------- 156 (366)
T KOG2655|consen 88 GFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS---------- 156 (366)
T ss_pred CCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh----------
Confidence 921 11111 001122 678888888866431 22221 1222222
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCc
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
..+.+|-|.-|+|....
T Consensus 157 ------~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 157 ------KKVNLIPVIAKADTLTK 173 (366)
T ss_pred ------ccccccceeeccccCCH
Confidence 25678888899998765
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=76.46 Aligned_cols=97 Identities=13% Similarity=0.009 Sum_probs=56.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCC--CCCccCCCCCceEEEEEEeCCCchh---
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGS--SSNSIKGDSERDFFVELWDISGHER--- 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~i~Dt~G~e~--- 95 (333)
+|+.|||.+|||||||++.+++... .....+..+.+.....+.+....- -...+.........+.+.|++|.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6999999999999999999998765 332223222333333444431000 0000000111234689999999322
Q ss_pred ----hhhhHHhhccCCcEEEEEEECCC
Q 019959 96 ----YKDCRSILYSQINGVIFVHDLSQ 118 (333)
Q Consensus 96 ----~~~~~~~~~~~ad~vIlV~D~s~ 118 (333)
.....-..++.+|++++|+|..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 11122234778999999999853
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.10 E-value=1e-05 Score=74.77 Aligned_cols=58 Identities=28% Similarity=0.396 Sum_probs=40.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
...++|+|+|.+|||||||+|+|++...... ....|.+.....+.++ . .+.|+||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~--------------~--~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLS--------------D--GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeC--------------C--CEEEEECCCc
Confidence 4568999999999999999999997653222 2223444444455442 1 3789999995
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.3e-06 Score=77.38 Aligned_cols=61 Identities=31% Similarity=0.448 Sum_probs=45.1
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
.+-....++|.|||.+|||||||+|+|++... ....+..|.+-....+.+.. .+.|+||||
T Consensus 126 ~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~----------------~i~LlDtPG 186 (322)
T COG1161 126 KGLLKRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDD----------------GIYLLDTPG 186 (322)
T ss_pred cCCCccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCC----------------CeEEecCCC
Confidence 33345567899999999999999999998765 23333336666667776642 289999999
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.5e-06 Score=76.03 Aligned_cols=130 Identities=22% Similarity=0.316 Sum_probs=81.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------CCcccceeEEEEEEEeCCCCCCCCc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSR-----------------------PSQTIGCTVGVKHITYGSSGSSSNS 74 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~~ 74 (333)
..-.++|+|+|...+|||||+--|+.+..... ...++|.+-.-+.+.|.... +...
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~-taEE 242 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNM-TAEE 242 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcc-cHHH
Confidence 45568999999999999999988886543221 11233444444444443110 0001
Q ss_pred cCCCCCceEEEEEEeCCCchhhhhhHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 019959 75 IKGDSERDFFVELWDISGHERYKDCRSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPV 152 (333)
Q Consensus 75 i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 152 (333)
| .+...-.+.++|.+|+.+|......-+. ..|..++|+++...-.... +..+..+... ++
T Consensus 243 i--~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---------------~i 304 (591)
T KOG1143|consen 243 I--VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---------------NI 304 (591)
T ss_pred H--HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---------------CC
Confidence 1 1122345889999999999876554443 4688889998877543322 2223333333 79
Q ss_pred cEEEEeeCcCCCCc
Q 019959 153 PYVVIGNKADVAAK 166 (333)
Q Consensus 153 PiivVgNK~Dl~~~ 166 (333)
|++++.+|+||.+.
T Consensus 305 PfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 305 PFFVLVTKMDLVDR 318 (591)
T ss_pred CeEEEEEeeccccc
Confidence 99999999999875
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.8e-05 Score=86.71 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=68.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCC------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC----c
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGSSFSRP------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG----H 93 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G----~ 93 (333)
.+|||++|+|||||+.+- +-.|.-.. ...++-+.. ..+.+. + ...++||+| +
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~-------------~---~avliDtaG~y~~~ 175 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFT-------------D---EAVLIDTAGRYTTQ 175 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEec-------------C---CEEEEcCCCccccC
Confidence 789999999999999987 33442211 111111111 111111 1 255899999 2
Q ss_pred h----hhhhhHHhhc---------cCCcEEEEEEECCCccc--H-------HHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019959 94 E----RYKDCRSILY---------SQINGVIFVHDLSQRRT--K-------TSLQKWAVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 94 e----~~~~~~~~~~---------~~ad~vIlV~D~s~~~S--~-------~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
+ .....+..++ +-.||||+|+|+.+.-. - ..+...+.++.+... ..
T Consensus 176 ~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg------------~~ 243 (1169)
T TIGR03348 176 DSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG------------AR 243 (1169)
T ss_pred CCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC------------CC
Confidence 1 2223333332 35899999999977532 1 234556677766653 58
Q ss_pred CcEEEEeeCcCCCC
Q 019959 152 VPYVVIGNKADVAA 165 (333)
Q Consensus 152 ~PiivVgNK~Dl~~ 165 (333)
+||.||.||+|+..
T Consensus 244 ~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 244 FPVYLVLTKADLLA 257 (1169)
T ss_pred CCEEEEEecchhhc
Confidence 99999999999874
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.7e-06 Score=70.79 Aligned_cols=55 Identities=33% Similarity=0.475 Sum_probs=36.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFS-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
.+++++|.+|||||||+|+|++..... ......|.+.....+.++ . .+.|+||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-------------~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-------------N---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-------------C---CCEEEeCcC
Confidence 589999999999999999999754211 111222444444444442 1 378999999
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.3e-05 Score=65.91 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=52.1
Q ss_pred cEEEEEEECCCcccHHHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHH
Q 019959 108 NGVIFVHDLSQRRTKTSLQKWAV-EIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEK 186 (333)
Q Consensus 108 d~vIlV~D~s~~~S~~~l~~~~~-~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~ 186 (333)
|++|+|+|+.++.+... .|+. ..... .+.|+|+|.||+|+... +....|...
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~--------------~~~p~IiVlNK~Dl~~~-----------~~~~~~~~~ 53 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE--------------KGKKLILVLNKADLVPK-----------EVLRKWLAY 53 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc--------------CCCCEEEEEechhcCCH-----------HHHHHHHHH
Confidence 78999999998866543 2333 12121 26899999999999654 223333222
Q ss_pred cCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 187 QGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 187 ~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.-.. ..+++. +||++|.|++++.+.+.+..
T Consensus 54 ~~~~~---~~~ii~---------vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 54 LRHSY---PTIPFK---------ISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred HHhhC---CceEEE---------EeccCCcChhhHHHHHHHHh
Confidence 11000 023444 99999999998888776653
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.1e-05 Score=73.58 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=63.3
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+.|..+....-...+.|++|+|+.+.. ..|...+.+... +.|+++|+||+||... .+..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-------------~kpviLViNK~DLl~~---~~~~ 115 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-------------NNPVLLVGNKADLLPK---SVKK 115 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-------------CCCEEEEEEchhhCCC---ccCH
Confidence 456665555333344999999998754 346666655431 5789999999999753 2222
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
..+.+..+.+++.+|+.. ..++. +||++|.|++++++.+.+.
T Consensus 116 ~~i~~~l~~~~k~~g~~~----~~v~~---------vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 116 NKVKNWLRQEAKELGLRP----VDVVL---------ISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHHHHHHHHHHhcCCCc----CcEEE---------EECCCCCCHHHHHHHHHHh
Confidence 111223333455556421 13455 9999999999999888653
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.4e-05 Score=66.93 Aligned_cols=93 Identities=16% Similarity=0.089 Sum_probs=57.6
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
+........+..+|++++|+|++++...... .+...+ .+.|+++|.||+|+...
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----------------~~k~~ilVlNK~Dl~~~-------- 61 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----------------GNKPRIIVLNKADLADP-------- 61 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----------------cCCCEEEEEehhhcCCh--------
Confidence 3444455668899999999999876543221 122211 14689999999999643
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+....|.+.+... ...++. +||+++.|++++.+.+...+
T Consensus 62 ---~~~~~~~~~~~~~----~~~vi~---------iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 62 ---KKTKKWLKYFESK----GEKVLF---------VNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ---HHHHHHHHHHHhc----CCeEEE---------EECCCcccHHHHHHHHHHHH
Confidence 1122232221110 012344 99999999998888877664
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.1e-05 Score=65.04 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=36.4
Q ss_pred hhccCCcEEEEEEECCCcccHH--HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 102 ILYSQINGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
..+..+|++++|+|+.++.+.. .+..|+.... .+.|+++|+||+|+..+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~----------------~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD----------------PRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc----------------CCCcEEEEEechhcCCH
Confidence 3478999999999999887644 4455554331 25799999999999654
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG4273 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.4e-05 Score=66.66 Aligned_cols=109 Identities=24% Similarity=0.329 Sum_probs=68.2
Q ss_pred EEEEECCCCC--CHHHHHHHHHcCCCCCCCCcc-----cceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 23 RVLVVGDSGV--GKTSLVNLIVKGSSFSRPSQT-----IGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 23 kI~ivG~~~v--GKSSLl~~l~~~~~~~~~~~t-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
-++|+|.+|| ||-+|+++|....|....... .|+++..|.... .+.+.|.-... +.
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysa----------------di~lcishicd-e~ 68 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSA----------------DINLCISHICD-EK 68 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeec----------------ceeEEeecccc-hh
Confidence 5889999999 999999999977775443332 234444444332 22233322211 12
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCC
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVA 164 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~ 164 (333)
+-... .......++++|||++....+..++.|+....-. ..- ++.+|||.|..
T Consensus 69 ~lpn~-~~a~pl~a~vmvfdlse~s~l~alqdwl~htdin---------------sfdillcignkvdrv 122 (418)
T KOG4273|consen 69 FLPNA-EIAEPLQAFVMVFDLSEKSGLDALQDWLPHTDIN---------------SFDILLCIGNKVDRV 122 (418)
T ss_pred ccCCc-ccccceeeEEEEEeccchhhhHHHHhhccccccc---------------cchhheecccccccc
Confidence 21111 1233567999999999999999999998754322 122 45679999964
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.1e-05 Score=65.13 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
...+|+++|.+|||||||+|.+++..
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccc
Confidence 45789999999999999999999764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.8e-05 Score=66.79 Aligned_cols=87 Identities=18% Similarity=0.109 Sum_probs=53.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--CCCCCC---CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--SSFSRP---SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
...-|+|+|++++|||+|+|+|++. .|.... ..|.|+-.....+.. +....+.++||+|..
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~--------------~~~~~v~~lDteG~~ 71 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL--------------GKEHAVLLLDTEGTD 71 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC--------------CCcceEEEEecCCcC
Confidence 3457899999999999999999988 554322 233333222211110 235679999999943
Q ss_pred hh------hhhHHhhccC--CcEEEEEEECCCcc
Q 019959 95 RY------KDCRSILYSQ--INGVIFVHDLSQRR 120 (333)
Q Consensus 95 ~~------~~~~~~~~~~--ad~vIlV~D~s~~~ 120 (333)
.. .......+.. ++++|+..+.....
T Consensus 72 ~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 72 GRERGEFEDDARLFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred ccccCchhhhhHHHHHHHHHhCEEEEeccCcccH
Confidence 22 1112222333 88888888776544
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0001 Score=68.58 Aligned_cols=161 Identities=23% Similarity=0.233 Sum_probs=102.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC-------CCCC-------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG-------SSFS-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~-------~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
...+++|.-||.-.-|||||.-+++.- .+.. .....-|+++..-++.|. ....
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYe-------------Ta~R 117 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYE-------------TAKR 117 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeee-------------cccc
Confidence 445679999999999999999988721 1111 111223667777777775 2233
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEee
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGN 159 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgN 159 (333)
...-.|+||+.+|......-..+.|+.|+|+.++|.. +-+++ -..++. .++ ++|..|
T Consensus 118 hYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl----LLArQV---------------GV~~ivvfiN 178 (449)
T KOG0460|consen 118 HYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHL----LLARQV---------------GVKHIVVFIN 178 (449)
T ss_pred ccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHH----HHHHHc---------------CCceEEEEEe
Confidence 3456799999999776555567899999999999964 33333 222222 234 677789
Q ss_pred CcCCCCc-cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHH
Q 019959 160 KADVAAK-EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAV 222 (333)
Q Consensus 160 K~Dl~~~-~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~ 222 (333)
|.|+.++ +..+.. +-+++++..++|+.. +++|++- | =-.+|..|.+-+-..
T Consensus 179 KvD~V~d~e~leLV----EmE~RElLse~gf~G--d~~PvI~---G---SAL~ALeg~~peig~ 230 (449)
T KOG0460|consen 179 KVDLVDDPEMLELV----EMEIRELLSEFGFDG--DNTPVIR---G---SALCALEGRQPEIGL 230 (449)
T ss_pred cccccCCHHHHHHH----HHHHHHHHHHcCCCC--CCCCeee---c---chhhhhcCCCccccH
Confidence 9999954 222222 256788888888642 3577766 1 114566665444333
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=66.26 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=44.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
-.++|+.||.+|.|||||+..|.+-.|...+.+..-..+..+.-+|+-. ..+...++.|.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~Tyelq---------EsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQ---------ESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhh---------hcCeeEEEEEEeecc
Confidence 3579999999999999999999998886554433222233333333210 225678899999999
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.9e-05 Score=70.88 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=70.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCcccc-----eeEEEEEEEeCCCCC-CCCc
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS------------------RPSQTIG-----CTVGVKHITYGSSGS-SSNS 74 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~------------------~~~~t~~-----~~~~~~~~~~~~~~~-~~~~ 74 (333)
.-+++|+|||+..+|||||+--|+++.... .....+| .|..-..+..+.++. .-+-
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 456899999999999999998887654321 1111222 222222222211111 1111
Q ss_pred cCCCCCceEEEEEEeCCCchhhhhhHHhhcc--CCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 019959 75 IKGDSERDFFVELWDISGHERYKDCRSILYS--QINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGG 149 (333)
Q Consensus 75 i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~--~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 149 (333)
++...+..--+.++|.+|+|+|-...-.-.. -.|..++++-++-. -+.+++.. ...
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgL----ALa--------------- 271 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGL----ALA--------------- 271 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhh----hhh---------------
Confidence 1111222335789999999998655432222 24566666655432 12333321 111
Q ss_pred CCCcEEEEeeCcCCCCc
Q 019959 150 LPVPYVVIGNKADVAAK 166 (333)
Q Consensus 150 ~~~PiivVgNK~Dl~~~ 166 (333)
.++|++||.+|+|+...
T Consensus 272 L~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 272 LHVPVFVVVTKIDMCPA 288 (641)
T ss_pred hcCcEEEEEEeeccCcH
Confidence 26999999999999875
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.5e-05 Score=65.15 Aligned_cols=22 Identities=41% Similarity=0.762 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++++|.+|||||||+|.|+..
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999976
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00015 Score=73.58 Aligned_cols=115 Identities=21% Similarity=0.265 Sum_probs=81.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC------------CC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS------------SF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~------------~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 85 (333)
..-+|+++-.-.-|||||...|+-.. |. .+..++-|++.....+.+- ...+.+
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~-------------~~~~~~ 74 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL-------------HKDYLI 74 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc-------------cCceEE
Confidence 33479999999999999999998432 11 1334455555554444442 467899
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
+++|+|||-+|.+......+-+|+.++.+|+...-.-+......+...+ ....++|.||+|.
T Consensus 75 nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~----------------~~~~~lvinkidr 136 (887)
T KOG0467|consen 75 NLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE----------------GLKPILVINKIDR 136 (887)
T ss_pred EEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc----------------cCceEEEEehhhh
Confidence 9999999999999988888899999999999876544433222222211 3567889999993
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=65.87 Aligned_cols=87 Identities=23% Similarity=0.152 Sum_probs=56.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY---- 96 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~---- 96 (333)
-+|-++|-+.||||||+..+++..... .+.-| .+....-.+.+. .-++++.|.||.-+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyeft-tl~~vpG~~~y~---------------gaKiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFT-TLTTVPGVIRYK---------------GAKIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccce-eEEEecceEecc---------------ccceeeecCcchhcccccC
Confidence 488999999999999999998654322 22222 222223333343 346999999993211
Q ss_pred hhh---HHhhccCCcEEEEEEECCCcccHHH
Q 019959 97 KDC---RSILYSQINGVIFVHDLSQRRTKTS 124 (333)
Q Consensus 97 ~~~---~~~~~~~ad~vIlV~D~s~~~S~~~ 124 (333)
+.. .....+.|+.+++|.|+-.+-+-..
T Consensus 124 kgrg~qviavartcnli~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDVLKPLSHKK 154 (358)
T ss_pred CCCccEEEEEeecccEEEEEeeccCcccHHH
Confidence 111 1134668999999999988876544
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00053 Score=69.02 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=44.3
Q ss_pred EEEEeCCCc---hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 85 VELWDISGH---ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 85 l~i~Dt~G~---e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
+.+.|.||. .....-...++..+|++|+|..+.+..+.... .++....+. +.-|+++.||.
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~~---------------KpniFIlnnkw 271 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSEE---------------KPNIFILNNKW 271 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhcc---------------CCcEEEEechh
Confidence 668899993 33444455678899999999988776554443 344433332 23477888999
Q ss_pred CCCCcc
Q 019959 162 DVAAKE 167 (333)
Q Consensus 162 Dl~~~~ 167 (333)
|....+
T Consensus 272 Dasase 277 (749)
T KOG0448|consen 272 DASASE 277 (749)
T ss_pred hhhccc
Confidence 987653
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00049 Score=61.29 Aligned_cols=172 Identities=17% Similarity=0.258 Sum_probs=97.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh---
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC--- 99 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~--- 99 (333)
+|+++|-.-+||||+-.-..++-. +..|.-++-+.+. +++.|. ..-+.+++||.|||-.+-.-
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMs---PneTlflESTski--------~~d~is---~sfinf~v~dfPGQ~~~Fd~s~D 94 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMS---PNETLFLESTSKI--------TRDHIS---NSFINFQVWDFPGQMDFFDPSFD 94 (347)
T ss_pred eEEEEeecccCcchhhheeeeccC---CCceeEeeccCcc--------cHhhhh---hhhcceEEeecCCccccCCCccC
Confidence 699999999999998765554421 1112111111111 111111 23456999999997544221
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
....++++-++|+|+|+-+. -.+.+..+...+.+..+. ++++.+=|...|.|-..++-+.-...++.+.
T Consensus 95 ~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykv----------Np~in~EVfiHKvDGLsdd~kietqrdI~qr 163 (347)
T KOG3887|consen 95 YEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKV----------NPNINFEVFIHKVDGLSDDFKIETQRDIHQR 163 (347)
T ss_pred HHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeec----------CCCceEEEEEEeccCCchhhhhhhHHHHHHH
Confidence 22357899999999998653 233444444444333221 2578888889999977655444444455555
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.+-....|+.. +++ +++.+|-- ...+-|+|.++++.++.
T Consensus 164 ~~d~l~d~gle~----v~v-------sf~LTSIy-DHSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 164 TNDELADAGLEK----VQV-------SFYLTSIY-DHSIFEAFSKVVQKLIP 203 (347)
T ss_pred hhHHHHhhhhcc----ceE-------EEEEeeec-chHHHHHHHHHHHHHhh
Confidence 555555556531 221 12225554 45566777777776654
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=69.48 Aligned_cols=23 Identities=43% Similarity=0.726 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
-++|+|.+|||||||+|+|++..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 37999999999999999999663
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00021 Score=66.05 Aligned_cols=89 Identities=20% Similarity=0.167 Sum_probs=56.3
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
....+..+|+||+|+|+..+.+..+ .++.++.. +.|+|+|.||+|+.+. +.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l~----------------~kp~IiVlNK~DL~~~-----------~~ 65 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIRG----------------NKPRLIVLNKADLADP-----------AV 65 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHHC----------------CCCEEEEEEccccCCH-----------HH
Confidence 4456889999999999987755332 12222211 4689999999999643 22
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
...|.+.+.-. ..+++. +||+++.|++++.+.+.+.+-
T Consensus 66 ~~~~~~~~~~~----~~~vi~---------iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 66 TKQWLKYFEEK----GIKALA---------INAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred HHHHHHHHHHc----CCeEEE---------EECCCcccHHHHHHHHHHHHH
Confidence 33333322100 023444 999999999888877766553
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00016 Score=69.44 Aligned_cols=23 Identities=48% Similarity=0.671 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+|+|||.+|||||||+|++++.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 38999999999999999999974
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00057 Score=65.51 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=56.8
Q ss_pred ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHH
Q 019959 104 YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 183 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~ 183 (333)
..++|.+++|+++...-....+..++..+... +++.+||.||+||.+.. +...++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---------------~i~piIVLNK~DL~~~~----------~~~~~~ 164 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---------------GAEPVIVLTKADLCEDA----------EEKIAE 164 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---------------CCCEEEEEEChhcCCCH----------HHHHHH
Confidence 56899999999997555555677777766665 57888999999997541 212222
Q ss_pred HHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHH
Q 019959 184 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225 (333)
Q Consensus 184 ~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l 225 (333)
...... ..+.+. +||+++.|++++...+
T Consensus 165 ~~~~~~-----g~~Vi~---------vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 165 VEALAP-----GVPVLA---------VSALDGEGLDVLAAWL 192 (356)
T ss_pred HHHhCC-----CCcEEE---------EECCCCccHHHHHHHh
Confidence 222221 245666 9999998887766655
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00019 Score=65.23 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|.+|||||||+|+|++.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 7899999999999999999965
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00015 Score=69.66 Aligned_cols=23 Identities=48% Similarity=0.694 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++.|||.+|||||||+|+|+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 37999999999999999999854
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00013 Score=71.08 Aligned_cols=56 Identities=36% Similarity=0.321 Sum_probs=39.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
.+.|.+||.|||||||+||.|.+.+... -..|.|-+-...++.+.. .+.|.|+||-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~----------------~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP----------------SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC----------------CceecCCCCc
Confidence 6899999999999999999999876532 223334444444454432 2889999993
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=69.55 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=98.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC--------CCCCCC--------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEE
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG--------SSFSRP--------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~--------~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 85 (333)
-+|.|+..-.+||||...|++.- ...... ...-|+++..-.+.++ =+.+++
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fd-------------wkg~ri 104 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFD-------------WKGHRI 104 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecc-------------cccceE
Confidence 36888889999999999998732 111111 1112445555555544 456789
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
+++||||+-+|+.....+++-.|+++.|||.+-...-+.+..|.+.- + .++|-+...||+|...
T Consensus 105 nlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqad-k---------------~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 105 NLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD-K---------------FKIPAHCFINKMDKLA 168 (753)
T ss_pred eeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc-c---------------cCCchhhhhhhhhhhh
Confidence 99999999999888888899999999999999887777788887542 1 2689888899999865
Q ss_pred ccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccc
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTE 200 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E 200 (333)
.+- ......+-+++|..+..-.+|+-|
T Consensus 169 anf--------e~avdsi~ekl~ak~l~l~lpi~e 195 (753)
T KOG0464|consen 169 ANF--------ENAVDSIEEKLGAKALKLQLPIGE 195 (753)
T ss_pred hhh--------hhHHHHHHHHhCCceEEEEecccc
Confidence 421 133445556677655443445544
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00043 Score=58.48 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|+|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 689999999999999999865
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00051 Score=64.77 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
--|+|+|++|+||||++..+..
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4789999999999999998863
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00031 Score=67.06 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.++|+|.+|||||||+|+|++..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 38999999999999999999653
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00035 Score=64.62 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-.+++|.+|||||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5789999999999999999853
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0031 Score=53.89 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+||+|+|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998753
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0012 Score=60.91 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=18.6
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~ 42 (333)
-.|+++|.+||||||++-.+.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 468889999999999998886
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00033 Score=66.39 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...|+++|.+||||||++.++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA 161 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLA 161 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 3589999999999999777765
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00055 Score=66.43 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=55.1
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCccc----------HHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT----------KTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S----------~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
....+.++|++|+...+..|..++.++++||||+++++-+. +.+.-..+..+.....+ .
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~-----------~ 302 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF-----------K 302 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG-----------T
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc-----------c
Confidence 34567999999998888899999999999999999875322 33334455666555332 3
Q ss_pred CCcEEEEeeCcCCCC
Q 019959 151 PVPYVVIGNKADVAA 165 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~ 165 (333)
+.|+||+.||.|+..
T Consensus 303 ~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 303 NTPIILFLNKIDLFE 317 (389)
T ss_dssp TSEEEEEEE-HHHHH
T ss_pred cCceEEeeecHHHHH
Confidence 789999999999754
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00058 Score=63.51 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=56.2
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
....+..+|+||+|+|+.++.+... .++.++.. +.|+++|.||+|+.+. +.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----------------~kp~iiVlNK~DL~~~-----------~~ 68 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----------------NKPRLLILNKSDLADP-----------EV 68 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----------------CCCEEEEEEchhcCCH-----------HH
Confidence 3456889999999999987755332 12222211 4689999999999643 22
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
...|.+.+.-. ..+++. +||+++.|++++++.+...+-
T Consensus 69 ~~~~~~~~~~~----~~~vi~---------vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 69 TKKWIEYFEEQ----GIKALA---------INAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred HHHHHHHHHHc----CCeEEE---------EECCCcccHHHHHHHHHHHHH
Confidence 33343322100 023444 999999999888877766543
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0039 Score=61.52 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=44.3
Q ss_pred EEEEEeCCC-------------chhhhhhHHhhccCCcEEEEEEECCCcccH-HHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 019959 84 FVELWDISG-------------HERYKDCRSILYSQINGVIFVHDLSQRRTK-TSLQKWAVEIATSGTFSAPLASGGPGG 149 (333)
Q Consensus 84 ~l~i~Dt~G-------------~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~-~~l~~~~~~i~~~~~~~~~~~~~~~~~ 149 (333)
...+.|.|| .+....+...|..+.++||+|+--..-+.- .++......+.-+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~-------------- 478 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH-------------- 478 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--------------
Confidence 466899999 233456677788999999999854333221 2233333333222
Q ss_pred CCCcEEEEeeCcCCCCc
Q 019959 150 LPVPYVVIGNKADVAAK 166 (333)
Q Consensus 150 ~~~PiivVgNK~Dl~~~ 166 (333)
....|+|.+|.|+.++
T Consensus 479 -GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 479 -GRRTIFVLTKVDLAEK 494 (980)
T ss_pred -CCeeEEEEeecchhhh
Confidence 4568999999999876
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00075 Score=62.75 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
-.++++|.+|||||||+|.|++..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 379999999999999999999754
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00023 Score=65.30 Aligned_cols=176 Identities=15% Similarity=0.164 Sum_probs=96.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC---CCCCCCCccccee--EEE-EEEEeCCC-----------CCCCC-----ccC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG---SSFSRPSQTIGCT--VGV-KHITYGSS-----------GSSSN-----SIK 76 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~---~~~~~~~~t~~~~--~~~-~~~~~~~~-----------~~~~~-----~i~ 76 (333)
...++|.-+|.-.-||||++.++.+- .|..+-...+++. |.. +....+++ +++.. .+.
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 34578999999999999999999754 3333333322222 211 11111110 01100 111
Q ss_pred CCCCc---eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCC----cccHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 019959 77 GDSER---DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQ----RRTKTSLQKWAVEIATSGTFSAPLASGGPGG 149 (333)
Q Consensus 77 ~~~~~---~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~----~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 149 (333)
+..++ ...+.+.|+||++-.....-.-..-.|+.++.+..+. +.+-+++.. -++.+.
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L-------------- 179 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL-------------- 179 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh--------------
Confidence 11111 1347899999998766543322333577777776654 334444422 233333
Q ss_pred CCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 150 LPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 150 ~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..++++-||+||..++... +-.+.++.|.+-. ..+..|.+. +||.-++|++-+.+.++..+
T Consensus 180 --khiiilQNKiDli~e~~A~----eq~e~I~kFi~~t----~ae~aPiiP---------isAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 180 --KHIIILQNKIDLIKESQAL----EQHEQIQKFIQGT----VAEGAPIIP---------ISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred --ceEEEEechhhhhhHHHHH----HHHHHHHHHHhcc----ccCCCceee---------ehhhhccChHHHHHHHHhcC
Confidence 3588999999998753110 0123333333322 222345665 99999999988877776554
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0077 Score=60.16 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.|+|+|++|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988874
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0009 Score=62.56 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.++|+|.+|||||||+|+|++..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999653
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0023 Score=44.23 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=29.6
Q ss_pred CCcEEEEEEECCCcc--cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 106 QINGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 106 ~ad~vIlV~D~s~~~--S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
=.++|+|++|+|... +.+.-...+++++.... +.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-------------~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-------------NKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-------------TS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-------------CCCEEEEEeccC
Confidence 368999999999765 45555567888888753 799999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0014 Score=62.36 Aligned_cols=184 Identities=13% Similarity=0.108 Sum_probs=100.5
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCC------CCCCc-----ccceeEEEEEEEeCCCCCCCC---ccCC--
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSF------SRPSQ-----TIGCTVGVKHITYGSSGSSSN---SIKG-- 77 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~------~~~~~-----t~~~~~~~~~~~~~~~~~~~~---~i~~-- 77 (333)
.+.++..+++++++|.--+||||+-..++...-. ..|.. .-.--|....+..+.. .+. .+.-
T Consensus 72 ~~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~E--eR~kgKtvEvGr 149 (501)
T KOG0459|consen 72 CGEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGE--ERDKGKTVEVGR 149 (501)
T ss_pred ccCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchh--hhhccceeeeee
Confidence 4667788999999999999999987666422100 00000 0000011111111000 000 0000
Q ss_pred --CCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cHHHH---HHHHHHHHhcCCCCCCCCCCCCCC
Q 019959 78 --DSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TKTSL---QKWAVEIATSGTFSAPLASGGPGG 149 (333)
Q Consensus 78 --~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~~~l---~~~~~~i~~~~~~~~~~~~~~~~~ 149 (333)
-....-.+.|.|++|+..|....---..+||.-++|.++...+ -|+.= +......+..+
T Consensus 150 A~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g------------- 216 (501)
T KOG0459|consen 150 AYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG------------- 216 (501)
T ss_pred EEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-------------
Confidence 0012345889999999888765555567899999999884432 13221 11111122221
Q ss_pred CCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 150 LPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 150 ~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
-...|++.||+|-...+.+.--..++.+....+.+.+|...+.. ..|+. +|..+|.++++...
T Consensus 217 -v~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d-~~f~p---------~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 217 -VKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPD-KHFVP---------VSGLTGANVKDRTD 279 (501)
T ss_pred -cceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCC-ceeee---------cccccccchhhccc
Confidence 24578889999976543222222344566666777777654332 44555 99999988877543
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0022 Score=62.64 Aligned_cols=149 Identities=21% Similarity=0.213 Sum_probs=95.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC------------CCC--CCCcccceeEEEEEEEeCCCC--CCCCccCC-CCCceEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS------------SFS--RPSQTIGCTVGVKHITYGSSG--SSSNSIKG-DSERDFFV 85 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~------------~~~--~~~~t~~~~~~~~~~~~~~~~--~~~~~i~~-~~~~~~~l 85 (333)
++.||..-.-|||||...|.... |.. ...+.-++++....+.+-..- ..-..++. .++..+.+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 56778888899999999997431 211 223333555544444331100 00011222 56778999
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
+++|.||+-+|.+.....++-.|+.+.|+|.-+....+.-....+.+.+. +.-+||.||+|..-
T Consensus 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----------------IkPvlv~NK~DRAl 164 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----------------IKPVLVMNKMDRAL 164 (842)
T ss_pred EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----------------ccceEEeehhhHHH
Confidence 99999999999999889999999999999988766544433344445443 44457789999653
Q ss_pred ccCCccCcccHHHHHHHHHHHcC
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQG 188 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~ 188 (333)
-+ -+++.+++.+..+...+..+
T Consensus 165 LE-Lq~~~EeLyqtf~R~VE~vN 186 (842)
T KOG0469|consen 165 LE-LQLSQEELYQTFQRIVENVN 186 (842)
T ss_pred Hh-hcCCHHHHHHHHHHHHhccc
Confidence 22 45666666666666665544
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0034 Score=52.82 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..+||.|-|.+|||||||+.++.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH
Confidence 357999999999999999999873
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0045 Score=60.46 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~ 42 (333)
.-|+++|.+||||||++..|.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999986
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0021 Score=69.50 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=34.9
Q ss_pred ccCCcEEEEEEECCCcccHH---------HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 104 YSQINGVIFVHDLSQRRTKT---------SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~S~~---------~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
.+-.||||++.|+.+.-+-. .|..=+.++.+... ..+|+.|++||.|+..
T Consensus 212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~------------~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH------------ARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc------------cCCceEEEEecccccc
Confidence 34689999999997753311 12333555655543 4799999999999986
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0062 Score=58.53 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.++|+|++||||||++.+|..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3788999999999999999974
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.021 Score=55.79 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-+|+|||++||||||++..|.+
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998864
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0011 Score=62.90 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=43.6
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
.....++|.|||.+||||||+||+|....... -..+.|++-..+.+.++ -.+.|.|.||
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ld----------------k~i~llDsPg 306 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLD----------------KKIRLLDSPG 306 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheecc----------------CCceeccCCc
Confidence 34667999999999999999999999776522 23334555666666654 2388999999
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0018 Score=55.25 Aligned_cols=68 Identities=21% Similarity=0.148 Sum_probs=39.6
Q ss_pred eEEEEEEeCCCchhh-----hhhHHhh-ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEE
Q 019959 82 DFFVELWDISGHERY-----KDCRSIL-YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 155 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~-----~~~~~~~-~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pii 155 (333)
.+.+.|.|++|...+ ..+.... ....+.+++|+|..... ....+...+.+.. + ..-
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~--------------~-~~~ 143 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL--------------G-ITG 143 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC--------------C-CCE
Confidence 455788999996321 2121111 23589999999986432 2223444443332 2 255
Q ss_pred EEeeCcCCCCcc
Q 019959 156 VIGNKADVAAKE 167 (333)
Q Consensus 156 vVgNK~Dl~~~~ 167 (333)
+|.||.|.....
T Consensus 144 viltk~D~~~~~ 155 (173)
T cd03115 144 VILTKLDGDARG 155 (173)
T ss_pred EEEECCcCCCCc
Confidence 777999987653
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0065 Score=52.26 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=43.2
Q ss_pred eEEEEEEeCCCchhhhhh--HH---hhccCCcEEEEEEECCCcccHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCcEE
Q 019959 82 DFFVELWDISGHERYKDC--RS---ILYSQINGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYV 155 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~--~~---~~~~~ad~vIlV~D~s~~~S~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~Pii 155 (333)
.....|..+.|...-..+ .. ...-..+.+|.|+|+.+......+.. +..++ .. -=+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi-~~-----------------ADv 145 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI-AF-----------------ADV 145 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH-CT------------------SE
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc-hh-----------------cCE
Confidence 345667788884333332 00 01235789999999977544444433 33333 22 235
Q ss_pred EEeeCcCCCCccCCccCcccHHHHHHHHHHHcC
Q 019959 156 VIGNKADVAAKEGTRGSSGNLVDAARQWVEKQG 188 (333)
Q Consensus 156 vVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~ 188 (333)
||.||+|+..... . .+..+++.++++
T Consensus 146 IvlnK~D~~~~~~-~------i~~~~~~ir~ln 171 (178)
T PF02492_consen 146 IVLNKIDLVSDEQ-K------IERVREMIRELN 171 (178)
T ss_dssp EEEE-GGGHHHH---------HHHHHHHHHHH-
T ss_pred EEEeccccCChhh-H------HHHHHHHHHHHC
Confidence 7789999987531 0 244555555554
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0048 Score=57.05 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...++.|.|+|-||||||||+|++..
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~ 165 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRN 165 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHH
Confidence 45568999999999999999999864
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0018 Score=60.05 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
-.++|||++|.|||+++++|....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHC
Confidence 369999999999999999999653
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.029 Score=55.10 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.|+|+|++||||||++-.|.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999888775
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.011 Score=48.65 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=62.2
Q ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhc
Q 019959 25 LVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILY 104 (333)
Q Consensus 25 ~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~ 104 (333)
+.-|.+|+|||++.-.+...-. .....+ ..+..+..++ ...+.+.|+|+++.. .......+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~-------~~vd~D~~~~---------~~~yd~VIiD~p~~~--~~~~~~~l 64 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRV-------LLLDADLGLA---------NLDYDYIIIDTGAGI--SDNVLDFF 64 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcE-------EEEECCCCCC---------CCCCCEEEEECCCCC--CHHHHHHH
Confidence 3457889999999877752210 111111 1122221110 112568999998743 22234568
Q ss_pred cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 105 SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 105 ~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
..+|.+++|.+.+. .++..+...++.+.... ...++.+|.|+++-.
T Consensus 65 ~~aD~vviv~~~~~-~s~~~~~~~l~~l~~~~-------------~~~~~~lVvN~~~~~ 110 (139)
T cd02038 65 LAADEVIVVTTPEP-TSITDAYALIKKLAKQL-------------RVLNFRVVVNRAESP 110 (139)
T ss_pred HhCCeEEEEcCCCh-hHHHHHHHHHHHHHHhc-------------CCCCEEEEEeCCCCH
Confidence 89999999998864 45555555555554432 145678999999744
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0061 Score=60.91 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=87.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-----C-----------cccceeEEEEEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRP-----S-----------QTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~-----~-----------~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
+|-++-.--+|||||..+.+...-.... . ..-|++...-..... -+.+.++
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~-------------w~~~~iN 107 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFT-------------WRDYRIN 107 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeee-------------eccceeE
Confidence 5667777789999999998733111000 0 001112211111111 2367899
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
|+||||+-+|.--....++-.|+.|+|+|......-+....|.+ +.++ ++|.|...||+|....
T Consensus 108 iIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---------------~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 108 IIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---------------NVPRICFINKMDRMGA 171 (721)
T ss_pred EecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---------------CCCeEEEEehhhhcCC
Confidence 99999998887777777888999999999887765566666755 3444 6899999999998765
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCc
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPL 198 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 198 (333)
+. .....++..+++..+..-++|+
T Consensus 172 ~~--------~~~l~~i~~kl~~~~a~vqiPi 195 (721)
T KOG0465|consen 172 SP--------FRTLNQIRTKLNHKPAVVQIPI 195 (721)
T ss_pred Ch--------HHHHHHHHhhcCCchheeEccc
Confidence 32 2445555556554333323443
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.016 Score=54.72 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
=.+|-|.-|+|||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3567899999999999999854
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0031 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|.+|||||||.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
|
... |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.13 Score=49.97 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+.+=|.|||+--+|||||+.||..
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHH
Confidence 346799999999999999999974
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.02 Score=55.16 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=38.7
Q ss_pred EEEEEEeCCCchhhhh----hHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE-E
Q 019959 83 FFVELWDISGHERYKD----CRSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-V 155 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~----~~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi-i 155 (333)
+.+.|+||.|...+.. ....++. ...-+.||++++-. .+.+...++.+.. +|+ -
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~-----------------~~i~~ 342 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL-----------------FPIDG 342 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc-----------------CCcce
Confidence 4688999999543322 2223333 34456677888754 4555555555433 343 4
Q ss_pred EEeeCcCCCCc
Q 019959 156 VIGNKADVAAK 166 (333)
Q Consensus 156 vVgNK~Dl~~~ 166 (333)
++.||.|....
T Consensus 343 ~I~TKlDET~s 353 (407)
T COG1419 343 LIFTKLDETTS 353 (407)
T ss_pred eEEEcccccCc
Confidence 67899997754
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.03 Score=44.89 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
-++|.|++|+|||+|++.+...-
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998653
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.027 Score=43.57 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=49.9
Q ss_pred EEEEC-CCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 24 VLVVG-DSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 24 I~ivG-~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
|+|+| ..|+||||+...+...-- .....+ -.+.. +..+.+.|+|+++..... ...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~v-------l~~d~--------------d~~~d~viiD~p~~~~~~--~~~ 57 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-RRGKRV-------LLIDL--------------DPQYDYIIIDTPPSLGLL--TRN 57 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-hCCCcE-------EEEeC--------------CCCCCEEEEeCcCCCCHH--HHH
Confidence 56777 568999999887763211 111111 11112 122558999999864322 225
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAV 130 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~ 130 (333)
.+..+|.+|++.+.+ ..++..+..+++
T Consensus 58 ~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 58 ALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred HHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 577899999999875 446666666655
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.059 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.+|-|--|+|||||++.++.+.
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhcc
Confidence 4567889999999999999653
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.011 Score=58.03 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=18.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
..-|+++|.+||||||++-.|.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 3578999999999999666664
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0041 Score=53.04 Aligned_cols=22 Identities=23% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
||+|+|++|+|||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999854
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0052 Score=43.35 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-.+|.|+.|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999886
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.025 Score=52.47 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=56.8
Q ss_pred hhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
--..+.|-+|+|+.+.+++ +...+.+++-.+... ++.-|+|.||+||.++..... ++.
T Consensus 75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---------------gi~pvIvlnK~DL~~~~~~~~------~~~ 133 (301)
T COG1162 75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---------------GIEPVIVLNKIDLLDDEEAAV------KEL 133 (301)
T ss_pred CcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---------------CCcEEEEEEccccCcchHHHH------HHH
Confidence 3345688888999998887 455566666655544 566777899999997632110 122
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
..+....| .+.+. +|++++.+++++.+.+.
T Consensus 134 ~~~y~~~g-------y~v~~---------~s~~~~~~~~~l~~~l~ 163 (301)
T COG1162 134 LREYEDIG-------YPVLF---------VSAKNGDGLEELAELLA 163 (301)
T ss_pred HHHHHhCC-------eeEEE---------ecCcCcccHHHHHHHhc
Confidence 33334455 34555 99999977776665554
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.047 Score=57.02 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|||+.||||||++..|...
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhh
Confidence 6899999999999999999843
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0043 Score=55.84 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
=|+|||++|||||||++-+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999865
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.037 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 7999999999999999999865
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0049 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|+|.+|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998743
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.054 Score=46.24 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=58.5
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
..+.+.|+||++.... .....+..+|.+|+|...+. .+...+..++..+... +.|+.+|.||
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---------------~~~~~vV~N~ 152 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---------------GIPVGVVINK 152 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---------------CCCEEEEEeC
Confidence 4567999999975322 23345678999999999884 4677777777766654 4678899999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCC
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
+|..... .++++++++++|+
T Consensus 153 ~~~~~~~---------~~~~~~~~~~~~~ 172 (179)
T cd03110 153 YDLNDEI---------AEEIEDYCEEEGI 172 (179)
T ss_pred CCCCcch---------HHHHHHHHHHcCC
Confidence 9975421 2567778888774
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.006 Score=57.97 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=51.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC--------------CCCC-------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG--------------SSFS-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~--------------~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (333)
-|.+||-.|+||||.+-.|..- .|.. ......++.|+......+...--...++.-...
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke 182 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKE 182 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhc
Confidence 5889999999999988877521 1111 011112333332211111000000000001245
Q ss_pred eEEEEEEeCCCchh-----hhhhHHh-hccCCcEEEEEEECCCcccH
Q 019959 82 DFFVELWDISGHER-----YKDCRSI-LYSQINGVIFVHDLSQRRTK 122 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~-----~~~~~~~-~~~~ad~vIlV~D~s~~~S~ 122 (333)
.+.+.|.||+|... |..+... -.-..|-+|+|.|++-...-
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa 229 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA 229 (483)
T ss_pred CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhH
Confidence 67899999999321 2222111 13368999999999876543
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.085 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+|.|--|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 677899999999999999854
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0045 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999854
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.069 Score=41.78 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=42.0
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
.+.|.|+++.... .....+..+|.+|+|.+.+. .+...+..+++.+.+... .....+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~~~-----------~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVLDY-----------SLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHcCC-----------CCcCceEEEecC
Confidence 4889999985433 22345678999999987764 467777777777766532 012456777775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.07 Score=51.83 Aligned_cols=112 Identities=17% Similarity=0.223 Sum_probs=59.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCc------ccc----------------eeEEEEEEEeCCCCCCCCc--cCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ------TIG----------------CTVGVKHITYGSSGSSSNS--IKG 77 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~------t~~----------------~~~~~~~~~~~~~~~~~~~--i~~ 77 (333)
-+|+|||+.|||||||+..|++.--...... .+| ..|..+.+.++-.. -+.. -.+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~-ARK~LG~fG 692 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQE-ARKQLGTFG 692 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHH-HHHHhhhhh
Confidence 4899999999999999999986522111110 000 01111111110000 0000 000
Q ss_pred CCCceEEEEEEeCCCchhh-hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhc
Q 019959 78 DSERDFFVELWDISGHERY-KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATS 135 (333)
Q Consensus 78 ~~~~~~~l~i~Dt~G~e~~-~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~ 135 (333)
....-..+.|-|++|...- ..+....+...|++|+=- .|+--..+.+..+...|.++
T Consensus 693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE-PTNNLDIESIDALaEAIney 750 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE-PTNNLDIESIDALAEAINEY 750 (807)
T ss_pred hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC-CCCCcchhhHHHHHHHHHhc
Confidence 1122346889999885443 455666788888887743 34433456666666666666
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0063 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.752 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.||+|+|++|+||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999866
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.056 Score=49.79 Aligned_cols=22 Identities=27% Similarity=0.509 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-+|+++|++|+|||||+..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 4999999999999999988863
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0058 Score=49.99 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
|+++|.+|+|||||+..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999983
|
... |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.058 Score=52.93 Aligned_cols=80 Identities=18% Similarity=0.064 Sum_probs=45.6
Q ss_pred eEEEEEEeCCCchhh----hhhHHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEE
Q 019959 82 DFFVELWDISGHERY----KDCRSIL--YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 155 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~----~~~~~~~--~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pii 155 (333)
.+.+.|.||+|.-.. ......+ .-..|.+++|+|++.. +.+..+...+.... + ..=
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--------------~-i~g 243 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--------------G-LTG 243 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--------------C-CCE
Confidence 456899999994221 1111111 2357899999998743 34444444444321 1 235
Q ss_pred EEeeCcCCCCccCCccCcccHHHHHHHHHHHcCC
Q 019959 156 VIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 156 vVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
+|.||.|-.... -.+..++...++
T Consensus 244 iIlTKlD~~~~~----------G~~lsi~~~~~~ 267 (428)
T TIGR00959 244 VVLTKLDGDARG----------GAALSVRSVTGK 267 (428)
T ss_pred EEEeCccCcccc----------cHHHHHHHHHCc
Confidence 778999965442 235666666663
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0067 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|..|+|||||++.+++.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 7999999999999999988865
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.007 Score=54.05 Aligned_cols=22 Identities=45% Similarity=0.601 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|+|||||+|-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999988654
|
|
| >KOG3929 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0093 Score=53.80 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=52.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
...+..|++.|..++ |++++++....- ....+|..++|..-.-.-.+ ...--.++|..+|.....
T Consensus 42 ~~~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~------------~~kdiaN~WELGgg~~~~ 106 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGH------------NPKDIANFWELGGGTSLL 106 (363)
T ss_pred ccceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCC------------CchhHHHHHHhcCCccHH
Confidence 455678888888765 999999885533 23344555544322221110 011225789999965554
Q ss_pred hhHHhhcc----CCcEEEEEEECCCcccH
Q 019959 98 DCRSILYS----QINGVIFVHDLSQRRTK 122 (333)
Q Consensus 98 ~~~~~~~~----~ad~vIlV~D~s~~~S~ 122 (333)
.+..--++ ..=.+|++.|+++++.|
T Consensus 107 ~LLsVPit~~~l~~~slIL~LDls~p~~~ 135 (363)
T KOG3929|consen 107 DLLSVPITGDTLRTFSLILVLDLSKPNDL 135 (363)
T ss_pred HHhcCcccccchhhhhheeeeecCChHHH
Confidence 44332222 23367899999998753
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.16 Score=42.94 Aligned_cols=65 Identities=11% Similarity=-0.064 Sum_probs=44.0
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.+.|+|+++.-... ....+..+|.+|+|.+.+. .++..+..++..+.... ...+.+|.|+.|.
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--------------~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--------------IKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--------------CceEEEEEeCCcc
Confidence 58899998853322 2344678999999998874 45666666666665531 2346788999987
Q ss_pred CC
Q 019959 164 AA 165 (333)
Q Consensus 164 ~~ 165 (333)
..
T Consensus 127 ~~ 128 (179)
T cd02036 127 DM 128 (179)
T ss_pred cc
Confidence 54
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.077 Score=39.53 Aligned_cols=70 Identities=21% Similarity=0.167 Sum_probs=44.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh-HHh
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC-RSI 102 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~-~~~ 102 (333)
+++.|..|+|||++...+...--. . | .+.+.++ .+.++|+++.-..... ...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~-----g----~~v~~~~-----------------d~iivD~~~~~~~~~~~~~~ 54 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-R-----G----KRVLLID-----------------DYVLIDTPPGLGLLVLLCLL 54 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-C-----C----CeEEEEC-----------------CEEEEeCCCCccchhhhhhh
Confidence 678899999999999988743110 0 1 1111111 2789999985433221 134
Q ss_pred hccCCcEEEEEEECCCcc
Q 019959 103 LYSQINGVIFVHDLSQRR 120 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~ 120 (333)
....+|.++++.+.....
T Consensus 55 ~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 55 ALLAADLVIIVTTPEALA 72 (99)
T ss_pred hhhhCCEEEEecCCchhh
Confidence 466899999999887543
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.038 Score=49.20 Aligned_cols=130 Identities=15% Similarity=0.248 Sum_probs=73.3
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQ----------RRTKTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~----------~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
..+.+.+.|++|+..-+..|..++.+.-.+++++.++. ....++-...+..|...--| .
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF-----------~ 265 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF-----------Q 265 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc-----------c
Confidence 34557799999987766666666666666665554432 22233333455555554222 3
Q ss_pred CCcEEEEeeCcCCCCcc--------------CCccCcccHHHHHHHHHHHc--CCCCCCcCCCccccCCCCCceeeeecc
Q 019959 151 PVPYVVIGNKADVAAKE--------------GTRGSSGNLVDAARQWVEKQ--GLLPSSEELPLTESFPGGGGLIAAAKE 214 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~~~--------------~r~v~~~~~~~~~~~~~~~~--~~~~~~~~~p~~E~~~~~~~~~~SAk~ 214 (333)
+.++|+..||.||.++. +...+ .+.+++|.-+. .+.+-..++-| ++| ++|..
T Consensus 266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qD----a~AAreFILkm~~d~nPd~dKii~-------SHf-TcATD 333 (359)
T KOG0085|consen 266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQD----AQAAREFILKMYVDMNPDSDKIIY-------SHF-TCATD 333 (359)
T ss_pred CCceEEEechhhhhhhhhhHHHHHHhCcccCCCccc----HHHHHHHHHHHHHhhCCCccceee-------eee-eeccc
Confidence 77899999999986542 11111 24455554332 12111111111 111 67777
Q ss_pred CcCHHHHHHHHHHHHHHHH
Q 019959 215 ARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 215 g~~v~~~~~~l~~~l~~~~ 233 (333)
-.|+.-+|..+-..++...
T Consensus 334 T~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 334 TENIRFVFAAVKDTILQLN 352 (359)
T ss_pred chhHHHHHHHHHHHHHHhh
Confidence 7788888888877776643
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.095 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
--|+|+|+.||||||++..+..
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.011 Score=47.03 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS 46 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~ 46 (333)
.++|+|++|+|||+++..++..-.
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccC
Confidence 789999999999999999986643
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.012 Score=42.40 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.027 Score=48.28 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=28.8
Q ss_pred cEEEEEEECCCcccHH--HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 108 NGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 108 d~vIlV~D~s~~~S~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
|+|++|+|+.++.+.. .+...+. +.. .+.|+|+|.||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~-l~~---------------~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL-QAG---------------GNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH-hcc---------------CCCCEEEEEehhhcCCH
Confidence 7899999998864422 2222221 211 25799999999999764
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.01 Score=48.84 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999854
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.019 Score=56.43 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...|+++|.+|+||||++..|.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4579999999999999998886
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.015 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.|+|||++|+|||||++.+-.-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 68999999999999999987553
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.0066 Score=57.84 Aligned_cols=86 Identities=23% Similarity=0.207 Sum_probs=51.7
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
.+-..+|-|.+||.+||||||+||.|-......- .|-.|.+-....+.+ .-.+-|+|+||.--
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItL----------------mkrIfLIDcPGvVy 364 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITL----------------MKRIFLIDCPGVVY 364 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHH----------------HhceeEecCCCccC
Confidence 3456678999999999999999999987765321 122232221222222 12377889999321
Q ss_pred h--hhhHHhhccCCcEEEEEEECCCccc
Q 019959 96 Y--KDCRSILYSQINGVIFVHDLSQRRT 121 (333)
Q Consensus 96 ~--~~~~~~~~~~ad~vIlV~D~s~~~S 121 (333)
- .+.....+ .+||-|=.+++++.
T Consensus 365 ps~dset~ivL---kGvVRVenv~~pe~ 389 (572)
T KOG2423|consen 365 PSSDSETDIVL---KGVVRVENVKNPED 389 (572)
T ss_pred CCCCchHHHHh---hceeeeeecCCHHH
Confidence 1 11222223 36778888888764
|
|
| >PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.089 Score=48.94 Aligned_cols=74 Identities=23% Similarity=0.169 Sum_probs=45.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
.|+|.|.+|+||||+++.|-.. |. ..+|....+.+..+...
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~~----------g~-----------------------------~~~d~~~~~L~~~l~~~ 48 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALEDL----------GY-----------------------------YCVDNLPPSLLPKLVEL 48 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHHc----------CC-----------------------------eEECCcCHHHHHHHHHH
Confidence 6899999999999999999422 11 11122222223333332
Q ss_pred hccC--CcEEEEEEECCCcccHHHHHHHHHHHHhc
Q 019959 103 LYSQ--INGVIFVHDLSQRRTKTSLQKWAVEIATS 135 (333)
Q Consensus 103 ~~~~--ad~vIlV~D~s~~~S~~~l~~~~~~i~~~ 135 (333)
.... .+.+.++.|+.+...+..+..++..+...
T Consensus 49 ~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~ 83 (288)
T PRK05416 49 LAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRER 83 (288)
T ss_pred HHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHc
Confidence 2222 45688888998776455666777777665
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.012 Score=50.73 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS 46 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~ 46 (333)
+|+|+|++|+|||||+|-+.+-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 799999999999999999876543
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.012 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999754
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.012 Score=47.00 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|.|++|+|||+|++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999865
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.012 Score=46.29 Aligned_cols=20 Identities=50% Similarity=0.823 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.++|+|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 68999999999999999986
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.012 Score=50.28 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.015 Score=50.15 Aligned_cols=20 Identities=50% Similarity=0.607 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.++|+|+.|+|||||++.++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 79999999999999999886
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.013 Score=55.57 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~~ 45 (333)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998653
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.016 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
...-|+|+|.+|+|||||++.+.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999854
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.014 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999864
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.016 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+|+|+|.+|+|||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.013 Score=48.55 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|..|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.02 Score=51.21 Aligned_cols=40 Identities=25% Similarity=0.476 Sum_probs=27.8
Q ss_pred CchhhhhhhhhccCCCCCCcceEEEEECCCCCCHHHHHHHHHcC
Q 019959 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
|.|--+..-+.=..+. ...|+|.|.+|||||+|..++...
T Consensus 1 ~~~~~k~~~~~l~~~~----f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 1 MLWLAKKIVSAYNNNG----FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CchHHHHHHHHHhcCC----eEEEEEECCCCCCHHHHHHHHHHH
Confidence 6676555433222222 248999999999999999998753
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.015 Score=46.31 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|.|.+|||||||++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
|
... |
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.014 Score=47.61 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+++|++|+|||+|++.+...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999744
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.015 Score=52.91 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|+|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999985
|
|
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.021 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..-|+|+|++|||||||+++|...
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 346889999999999999999754
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.018 Score=50.92 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.026 Score=51.64 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.0
Q ss_pred ccCCCCCCcceEEEEECCCCCCHHHHHHHHHc
Q 019959 12 ELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 12 ~~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+....+......++|.|++|+|||++...+..
T Consensus 33 ~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 33 EEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 33344455567899999999999999998864
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.018 Score=51.56 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|||++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 599999999999999999875
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.02 Score=50.64 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.018 Score=50.15 Aligned_cols=22 Identities=55% Similarity=0.729 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+++|++|||||||+|-+.+-
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcC
Confidence 5899999999999999988754
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.024 Score=49.88 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..+.|+|.|.+|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.021 Score=50.25 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.02 Score=49.75 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
=|+|+|++|||||||+++|+..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999864
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.021 Score=49.43 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+++-
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999854
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.021 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.02 Score=49.52 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.022 Score=51.08 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.022 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
+|+|+|.+|+||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999973
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.022 Score=48.82 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|+|.+|+||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.02 Score=49.86 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|.|+|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.021 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.022 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999865
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.024 Score=48.42 Aligned_cols=21 Identities=33% Similarity=0.806 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
+|.|-|++|+|||||+.+++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999884
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.021 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-+.|+|.+|+|||||+.+++..
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHH
Confidence 6899999999999999999854
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.023 Score=50.31 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.022 Score=49.14 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
=++|.|++|||||||+++|+...
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999664
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.024 Score=49.60 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.022 Score=48.82 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+|||||||++++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.02 Score=48.75 Aligned_cols=21 Identities=43% Similarity=0.786 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|.|++|+|||+|++++..
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.024 Score=49.88 Aligned_cols=22 Identities=50% Similarity=0.771 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.023 Score=51.30 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=21.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..++++|+|.+|+|||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3479999999999999999998854
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.022 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|+|||||++.+.+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999864
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.025 Score=49.24 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.++|+|+.|+|||||++.+++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998763
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.024 Score=49.90 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.025 Score=49.80 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.025 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999975
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.025 Score=49.83 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.022 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|.|++|+|||++++++...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999854
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.025 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999998865
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.026 Score=50.02 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999876
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.14 Score=50.31 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=40.3
Q ss_pred EEEeCC-CchhhhhhHHhhccCCcEEEEEEE-CCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 86 ELWDIS-GHERYKDCRSILYSQINGVIFVHD-LSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 86 ~i~Dt~-G~e~~~~~~~~~~~~ad~vIlV~D-~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
.+.|.+ |......+....|++++++|| | .|.--+..+++.++..+..... ...-||+|-.|.+
T Consensus 137 ~V~dLsVG~qQRVEIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~------------~G~tIi~ITHKL~ 201 (501)
T COG3845 137 KVADLSVGEQQRVEILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAA------------EGKTIIFITHKLK 201 (501)
T ss_pred eeecCCcchhHHHHHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHH------------CCCEEEEEeccHH
Confidence 355554 444445667778999998876 4 3444467777776666655432 3567888888865
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.024 Score=50.14 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999975
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.027 Score=49.94 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.028 Score=48.17 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 333 | ||||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 8e-08 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 1e-07 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 1e-07 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 1e-07 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 1e-07 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 2e-07 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 2e-07 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 5e-07 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 6e-07 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 6e-07 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 7e-07 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 8e-07 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 8e-07 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 8e-07 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 1e-06 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 1e-06 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 1e-06 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 1e-06 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 2e-06 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 2e-06 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 2e-06 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 2e-06 | ||
| 1oiw_A | 191 | X-ray Structure Of The Small G Protein Rab11a In Co | 2e-06 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 3e-06 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 3e-06 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 3e-06 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 3e-06 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 4e-06 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 4e-06 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 4e-06 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 4e-06 | ||
| 2gzd_A | 173 | Crystal Structure Of Rab11 In Complex With Rab11-Fi | 4e-06 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 4e-06 | ||
| 2d7c_A | 167 | Crystal Structure Of Human Rab11 In Complex With Fi | 4e-06 | ||
| 2hv8_A | 172 | Crystal Structure Of Gtp-Bound Rab11 In Complex Wit | 5e-06 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 5e-06 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 5e-06 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 5e-06 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 5e-06 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 6e-06 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 6e-06 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 6e-06 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 6e-06 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 7e-06 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 7e-06 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 7e-06 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 8e-06 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 8e-06 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 8e-06 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 9e-06 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 9e-06 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 9e-06 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 9e-06 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 9e-06 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 1e-05 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 1e-05 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 1e-05 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 1e-05 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 1e-05 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 2e-05 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 2e-05 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 3e-05 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 3e-05 | ||
| 1z0k_A | 172 | Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W | 3e-05 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 4e-05 | ||
| 3rwm_B | 185 | Crystal Structure Of Ypt32 In Complex With Gppnhp L | 4e-05 | ||
| 3q3j_B | 214 | Crystal Structure Of Plexin A2 Rbd In Complex With | 4e-05 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 4e-05 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 4e-05 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 4e-05 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 4e-05 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 6e-05 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 6e-05 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 7e-05 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 7e-05 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 8e-05 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 8e-05 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 9e-05 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 1e-04 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 1e-04 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 1e-04 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 1e-04 | ||
| 4djt_A | 218 | Crystal Structure Of A Nuclear Gtp-Binding Protein | 1e-04 | ||
| 2cls_A | 198 | The Crystal Structure Of The Human Rnd1 Gtpase In T | 1e-04 | ||
| 2rex_B | 197 | Crystal Structure Of The Effector Domain Of Plxnb1 | 2e-04 | ||
| 3gj4_A | 221 | Crystal Structure Of Human Rangdp-Nup153znf3 Comple | 2e-04 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 3e-04 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 3e-04 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 3e-04 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 6e-04 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 8e-04 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 8e-04 |
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167 | Back alignment and structure |
|
| >pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185 | Back alignment and structure |
|
| >pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218 | Back alignment and structure |
|
| >pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198 | Back alignment and structure |
|
| >pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197 | Back alignment and structure |
|
| >pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 2e-18
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 27/169 (15%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
V+++GDSGVGKTSL++ V +S+ + TIG K +T D ++
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDK-YSQQYKATIGADFLTKEVTV------------DGDKV 57
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ER++ Y + + V+D++ + +++ W E ++P
Sbjct: 58 ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPE 117
Query: 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLP 191
P+V++GNK D +E + S +A++ + G +P
Sbjct: 118 T--------FPFVILGNKIDA--EESKKIVS---EKSAQELAKSLGDIP 153
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 6e-17
Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 52/219 (23%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ---TIGCTVGVKHITYGSSGSSSNSIKG 77
++++++VG++G GKT+L+ ++K S T+G V I I+
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKT-KKSDLGMQSATVGIDVKDWPIQ----------IRD 50
Query: 78 DSERDFFVELWDISGHERYKDCRSI---LYSQINGVIFVHDLSQRRTK-TSLQKWAVEIA 133
+RD + +WD +G E + S +Q + V+DLS+ + + +++ W I
Sbjct: 51 KRKRDLVLNVWDFAGREEF---YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIK 107
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS 193
+ P +++G DV+ ++ + ++ + K+G
Sbjct: 108 ARAS-------------SSPVILVGTHLDVSDEKQRKACMS---KITKELLNKRGFPAIR 151
Query: 194 EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232
+ + A +E+ +A+ K + +I
Sbjct: 152 DYHFVN-----------ATEES----DALAKLRKTIINE 175
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 9e-17
Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 30/169 (17%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
V+++GD GVGK+SL+N V F TIG K + + +
Sbjct: 10 VILLGDGGVGKSSLMNRYVTN-KFDTQLFHTIGVEFLNKDLEVD-----GHFVT------ 57
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ER++ R+ Y + + + ++ +L W E P
Sbjct: 58 --MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 115
Query: 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLP 191
+ P+V++GNK D++ ++ + + A+ W G P
Sbjct: 116 S--------FPFVILGNKIDISERQVST-------EEAQAWCRDNGDYP 149
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 2e-16
Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 21/165 (12%)
Query: 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVK 61
+++ E + +++V ++GD GKTSL+ ++ + + SQT G V K
Sbjct: 22 YFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTK 81
Query: 62 HITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT 121
+ D ++ WD G E ++ + + + D RT
Sbjct: 82 QAP-----NIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RT 133
Query: 122 KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
++ W I G P +V+ NK D
Sbjct: 134 DSNKHYWLRHIEKYGG-------------KSPVIVVMNKIDENPS 165
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-15
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 23/145 (15%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
V+++GDSGVGKTSL+N V FS + TIG K + +
Sbjct: 11 VIILGDSGVGKTSLMNQYVNK-KFSNQYKATIGADFLTKEVMVD-----DRLVT------ 58
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ER++ Y + + V D++ T +L W E + P
Sbjct: 59 --MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 143 ASGGPGGLPVPYVVIGNKADVAAKE 167
P+VV+GNK D+ ++
Sbjct: 117 N--------FPFVVLGNKIDLENRQ 133
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 3e-15
Identities = 34/171 (19%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDS 79
++++++G++ VGK+S+V V F+ + TIG + +T +++K
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSND-FAENKEPTIGAAFLTQRVTINE-----HTVK--- 53
Query: 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
E+WD +G ER+ Y + V+D+++ ++ + W E+ +
Sbjct: 54 -----FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD 108
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190
+ ++GNK D + G R + + + E++GLL
Sbjct: 109 ------------IIIALVGNKIDXLQEGGERKVA---REEGEKLAEEKGLL 144
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-14
Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIV-KGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGD 78
+ +V VVG++ VGK++L+++ KGS F + T G V V +T ++
Sbjct: 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP-----DTTVS-- 72
Query: 79 SERDFFVELW--DISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIA 133
VEL+ D +G + Y + + ++ + I V D+S + S + W +
Sbjct: 73 ------VELFLLDTAGSDLY---KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLK 123
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA--ARQWVEKQGLL 190
++ P+ V++ NK D+ + V A+ W L
Sbjct: 124 SARPDRER---------PLRAVLVANKTDLPPQRHQ-------VRLDMAQDWATTNTLD 166
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-14
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDS 79
Q++++V+GD GKTSL + +F + + TIG ++ IT + ++
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQE-TFGKQYKQTIGLDFFLRRITLP----GNLNVT--- 57
Query: 80 ERDFFVELWDISGHERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWAVEIATSG 136
+++WDI G +L I GV+ V+D++ ++ +L+ W +
Sbjct: 58 -----LQIWDIGGQTIG---GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVS 109
Query: 137 TFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
S ++GNK D+
Sbjct: 110 EESET---------QPLVALVGNKIDLEHM 130
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-14
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 36/168 (21%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++VGD G GKT+ V + G F + T+G V ++ IK
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFH-----TNRGPIK------ 65
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+WD +G E++ R Y Q I + D++ R T ++ W ++
Sbjct: 66 --FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE----- 118
Query: 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190
+P V+ GNK D+ ++ + + + K+ L
Sbjct: 119 --------NIPIVLCGNKVDIKDRK--------VKAKSIVFHRKKNLQ 150
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 7e-14
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 27/152 (17%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNS 74
G +++V ++GD+GVGK+S++ V+ SF TIG + K + Y +
Sbjct: 1 GSALRELKVCLLGDTGVGKSSIMWRFVED-SFDPNINPTIGASFMTKTVQYQ-----NEL 54
Query: 75 IKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIAT 134
K +WD +G ER++ + Y I V+D+++ T ++L+ W E+
Sbjct: 55 HK--------FLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ 106
Query: 135 SGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
G S + + GNK D+
Sbjct: 107 HGPPS------------IVVAIAGNKCDLTDV 126
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-13
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 33/155 (21%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNS 74
G Q +++++G+S VGK+SLV VKG F + TIG + + +
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKG-QFHEFQESTIGAAFLTQTVCLD-----DTT 54
Query: 75 IKGDSERDFFVELWDISGHERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWAVE 131
+K E+WD +G ERY S+ I V+D++ + + W E
Sbjct: 55 VK--------FEIWDTAGQERY---HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 103
Query: 132 IATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
+ P + + GNKAD+A K
Sbjct: 104 LQR---------QASPN---IVIALSGNKADLANK 126
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 2e-13
Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 47/195 (24%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGC-------TVGVKHITYGSSGSSS 72
+ +++G+S VGK+S+V + K + F + TIG + +I S+ +
Sbjct: 7 SYKTVLLGESSVGKSSIVLRLTKDT-FHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 73 NSIKGDSERDFFV-----------------ELWDISGHERYKDCRSILYSQINGVIFVHD 115
N+I ++ + + ++WD +G ERY + Y I V D
Sbjct: 66 NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 116 LSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175
+S T + W ++ S +++ NK D +
Sbjct: 126 ISNSNTLDRAKTWVNQLKISSN--------------YIIILVANKIDKNKFQVDI----- 166
Query: 176 LVDAARQWVEKQGLL 190
+++ + LL
Sbjct: 167 --LEVQKYAQDNNLL 179
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 4e-13
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 34/154 (22%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV----KHITYGSSGSSSNSIKGD 78
+ L +GDSGVGKTS++ G F+ T TVG+ K + Y ++G +G
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDG-KFNSKFIT---TVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 79 SERDFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEI--- 132
++LWD +G ER+ RS+ + G + + DL+ ++ +++ W ++
Sbjct: 69 RIH---LQLWDTAGLERF---RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122
Query: 133 ATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
A S V+ GNK+D+ +
Sbjct: 123 AYSEN--------------PDIVLCGNKSDLEDQ 142
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 5e-13
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+ +++GD GVGK+ L++ + + TIG G + I IK
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-----GQKIK------ 65
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G ER+ R++ Y G + V+D+++R T L W + +
Sbjct: 66 --LQIWDTAGQERF---RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN 120
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
++IGNKAD+ A+
Sbjct: 121 ------------TVIILIGNKADLEAQ 135
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 6e-13
Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 34/147 (23%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++VVG+ VGK+S++ KG F++ + TIG + I ++
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIQVN-----DEDVR------ 55
Query: 83 FFVELWDISGHERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+ LWD +G E + +I + + V + R + ++ W ++
Sbjct: 56 --LMLWDTAGQEEF---DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA----- 105
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
+P ++ NK D+
Sbjct: 106 --EVG------DIPTALVQNKIDLLDD 124
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 6e-13
Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 28/145 (19%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTV-GVKHITYGSSGSSSNSIKGDSER 81
+ ++GD GVGKT+ +N ++ G F + T+G V + N IK
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGR-FEKNYNATVGAVNHPVTFLD-----DQGNVIK----- 62
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
+WD +G E+ + + Y +G I D++ R T +L +W E
Sbjct: 63 ---FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQA------- 112
Query: 142 LASGGPGGLPVPYVVIGNKADVAAK 166
+ P VV NK D+ +
Sbjct: 113 VVGNE-----APIVVCANKIDIKNR 132
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 7e-13
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 33/157 (21%)
Query: 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSS 72
+ G P + +++ +G+ VGKTSL+ + SF Q TIG K +
Sbjct: 7 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYD-SFDNTYQATIGIDFLSKTMYLE-----D 60
Query: 73 NSIKGDSERDFFVELWDISGHERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWA 129
+++ ++LWD +G ER+ RS++ S I + V+D++ + KW
Sbjct: 61 RTVR--------LQLWDTAGQERF---RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWI 109
Query: 130 VEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
++ T G V +++GNK D++ K
Sbjct: 110 DDVRT---------ERGSD---VIIMLVGNKTDLSDK 134
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 8e-13
Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 58/246 (23%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+++GDSGVGK++L++ + TIG + I +IK
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-----GKTIK------ 55
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
++WD +G ERY R I Y G + V+D+++ T ++++W E+ +
Sbjct: 56 --AQIWDTAGQERY---RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN 110
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLT 199
+ +++GNK+D+ R D AR + EK L
Sbjct: 111 ------------IVIMLVGNKSDLRHL---RAVP---TDEARAFAEKNN-------LSFI 145
Query: 200 ESFPGGGGLIAAAKEARYDKEAVMKFFRML--IRRRYFSDEMPAPNPWSISPTHKPIQRL 257
E +A ++ +EA F +L I R ++ SP + +
Sbjct: 146 E---------TSALDSTNVEEA---FKNILTEIYRIVSQKQIADRAAHDESPGNNVVDIS 193
Query: 258 DENSSD 263
++D
Sbjct: 194 VPPTTD 199
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 9e-13
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+ +++GD+GVGK+ L+ TIG G + + IK
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID-----GKQIK------ 71
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G E + RSI Y G + V+D+++R T L W +
Sbjct: 72 --LQIWDTAGQESF---RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ----- 121
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
+S + ++IGNK+D+ ++
Sbjct: 122 --HSSSN-----MVIMLIGNKSDLESR 141
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 9e-13
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 33/155 (21%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNS 74
G +++V ++GD+GVGK+S+V V+ F TIG + K + G +
Sbjct: 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQD-HFDHNISPTIGASFMTKTVPCG-----NEL 71
Query: 75 IKGDSERDFFVELWDISGHERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWAVE 131
K +WD +G ER+ S+ + V+D++++ + +L+KW E
Sbjct: 72 HK--------FLIWDTAGQERF---HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE 120
Query: 132 IATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
+ G + + GNK D++
Sbjct: 121 LKE---------HGPEN---IVMAIAGNKCDLSDI 143
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-12
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 37/171 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++G+SGVGK+SL+ + + TIG VK I+ N K
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD-----GNKAK------ 65
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+ +WD +G ER+ R++ Y GVI V+D+++R T L W E+ T T +
Sbjct: 66 --LAIWDTAGQERF---RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN 120
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190
+ +++GNK D +E R + ++ K +L
Sbjct: 121 D-----------IVNMLVGNKIDKENREVDR-------NEGLKFARKHSML 153
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-12
Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 33/157 (21%)
Query: 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSS 72
G + +++++GD G GK+SLV VK F + TIG + +
Sbjct: 5 AAGNKSINAKLVLLGDVGAGKSSLVLRFVKD-QFVEFQESTIGAAFFSQTLAVN-----D 58
Query: 73 NSIKGDSERDFFVELWDISGHERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWA 129
++K E+WD +G ERY S+ I V D++ + + +KW
Sbjct: 59 ATVK--------FEIWDTAGQERY---HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWV 107
Query: 130 VEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
E+ G + + + GNK+D+
Sbjct: 108 QELQAQGNPN------------MVMALAGNKSDLLDA 132
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+++GDSGVGK++L++ + TIG + I +IK
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-----GKTIK------ 79
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
++WD +G ERY R+I Y G + V+D+++ T ++++W E+
Sbjct: 80 --AQIWDTAGLERY---RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD----- 129
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
A + +++GNK+D+
Sbjct: 130 --HADSN-----IVIMLVGNKSDLRHL 149
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 28/151 (18%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV----KHITYGSSGSSSNSIKGD 78
++L +GDSGVGKT+ + F+ T TVG+ K + Y + G + +S K
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDN-KFNPKFIT---TVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 79 SERDFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATS 135
++LWD +G ER+ RS+ + G + + DL+ +++ +++ W ++ +
Sbjct: 83 KVH---LQLWDTAGQERF---RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 136
Query: 136 GTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
V+IGNKAD+ +
Sbjct: 137 AYCEN-----------PDIVLIGNKADLPDQ 156
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-12
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+ LV+G++G GK+ L++ ++ + TIG G K I G +K
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG-----GKYVK------ 60
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G ER+ RS+ Y G + V+D++ R T +L W +
Sbjct: 61 --LQIWDTAGQERF---RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM----- 110
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
LAS + ++ GNK D+ A
Sbjct: 111 --LASQN-----IVIILCGNKKDLDAD 130
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-12
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 33/157 (21%)
Query: 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSS 72
+ G P + +++ +G+ VGKTSL+ + SF Q TIG K +
Sbjct: 9 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYD-SFDNTYQATIGIDFLSKTMYLE-----D 62
Query: 73 NSIKGDSERDFFVELWDISGHERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWA 129
+++ ++LWD +G ER+ RS++ S I + V+D++ + KW
Sbjct: 63 RTVR--------LQLWDTAGLERF---RSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWI 111
Query: 130 VEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
++ T G V +++GNK D+A K
Sbjct: 112 DDVRT---------ERGSD---VIIMLVGNKTDLADK 136
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-12
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+ LV+G +G GK+ L++ ++ + TIG G + + G ++K
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVG-----GKTVK------ 75
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G ER+ RS+ Y G + V+D++ R T SL W + T
Sbjct: 76 --LQIWDTAGQERF---RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDART----- 125
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
LAS + ++ GNK D+ +
Sbjct: 126 --LASPN-----IVVILCGNKKDLDPE 145
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-12
Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+++G+SGVGKT+L++ + TIG + + G + ++K
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-----TAAVK------ 75
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
++WD +G ERY R+I Y G + V DL++ +T +++W E+
Sbjct: 76 --AQIWDTAGLERY---RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD----- 125
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
A + +++GNK+D++
Sbjct: 126 --HAEAT-----IVVMLVGNKSDLSQA 145
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 3e-12
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 36/154 (23%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++GDSGVGK+ L+ V+ TIG +K + +K
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-----GKKVK------ 53
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G ER+ R+I Y G+I V+D++ RT T++++W +
Sbjct: 54 --LQIWDTAGQERF---RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE----- 103
Query: 140 APLASGGPGGLPVPYVVIGNKAD-----VAAKEG 168
A+ +++GNK+D V A +G
Sbjct: 104 --HANDE-----AQLLLVGNKSDMETRVVTADQG 130
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 3e-12
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++++G++GVGKT LV +G TIG +K + +K
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-----GEKVK------ 76
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G ER+ RSI Y N +I +D++ + L +W EI
Sbjct: 77 --LQIWDTAGQERF---RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQ----- 126
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
AS V V++GNK D+A +
Sbjct: 127 --YASNK-----VITVLVGNKIDLAER 146
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 3e-12
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ--TIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+V++VGDSGVGKT L+ G +F + T+G K + +K
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDG-AFLAGTFISTVGIDFRNKVLDVD-----GVKVK---- 61
Query: 81 RDFFVELWDISGHERYKDCRSI---LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGT 137
+++WD +G ER+ RS+ Y + ++ ++D++ + + ++Q W EI
Sbjct: 62 ----LQMWDTAGQERF---RSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE--- 111
Query: 138 FSAPLASGGPGGLPVPYVVIGNKADVAAK 166
A V +++GNK D A +
Sbjct: 112 ----YAQHD-----VALMLLGNKVDSAHE 131
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 4e-12
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++++GDSGVGK++L++ K TIG + + IK
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE-----GKRIK------ 63
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
++WD +G ERY R+I Y G + V+D+S+ + + W E+
Sbjct: 64 --AQIWDTAGQERY---RAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE----- 113
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
A V +IGNK+D+A
Sbjct: 114 --NADDN-----VAVGLIGNKSDLAHL 133
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 5e-12
Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 23/151 (15%)
Query: 21 QVRVLVVGDSGVGKTSLVNLI-------VKGSSFSRPSQTIGCTVGVKHITYGSSGSSSN 73
+++ G GKT+ + I KG S ++ T+ +
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDER-TLFFDFLPLDIGEVKGF 72
Query: 74 SIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIA 133
+ L+ + G Y R ++ ++G++FV D + R + + +
Sbjct: 73 KTR--------FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE 124
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164
+ L VP V+ NK D+
Sbjct: 125 NLAEYGLTLDD-------VPIVIQVNKRDLP 148
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 5e-12
Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 33/147 (22%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
V+++G+ VGKTSLV + F+ T+G + K + G +
Sbjct: 9 VVLLGEGCVGKTSLVLRYCEN-KFNDKHITTLGASFLTKKLNIG-----GKRVN------ 56
Query: 83 FFVELWDISGHERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+ +WD +G ER+ ++ NG I V+D++ + ++ W E+
Sbjct: 57 --LAIWDTAGQERF---HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK----- 106
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
+ + ++GNK D+ +
Sbjct: 107 --MLGNE-----ICLCIVGNKIDLEKE 126
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 5e-12
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++G+S VGKTS + S T+G VK + IK
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRH-----DKRIK------ 72
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G ERY R+I Y G + ++D++ + + ++Q WA +I T
Sbjct: 73 --LQIWDTAGQERY---RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT----- 122
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
+ +++GNK D+ +
Sbjct: 123 --YSWDN-----AQVILVGNKCDLEDE 142
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 5e-12
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++GDSGVGKT ++ + + S TIG ++ I IK
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-----GKRIK------ 58
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G ER+ R+I Y G++ V+D++ ++ +++ W I
Sbjct: 59 --LQIWDTAGQERF---RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE----- 108
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
AS V +++GNK DV K
Sbjct: 109 --HASAD-----VEKMILGNKCDVNDK 128
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 6e-12
Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 33/147 (22%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+L++G+SGVGK+ L+ +++ TIG +K + ++K
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDD-TYTNDYISTIGVDFKIKTVELD-----GKTVK------ 58
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G ER+ R+I Y +G+I V+D++ + + ++ W EI T +
Sbjct: 59 --LQIWDTAGQERF---RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST 113
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
V +++GNK D+ K
Sbjct: 114 ------------VLKLLVGNKCDLKDK 128
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 6e-12
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 29/147 (19%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++V+GDS VGKT L G R TIG + + IK
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID-----GERIK------ 70
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
++LWD +G ER++ +S++ Y ++ V+FV+D++ + SL W E +
Sbjct: 71 --IQLWDTAGQERFR--KSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN 126
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
+P +++GNK D+ +
Sbjct: 127 D-----------IPRILVGNKCDLRSA 142
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 7e-12
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 33/147 (22%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+L++G+S VGKTS + +F+ T+G VK + +K
Sbjct: 26 LLIIGNSSVGKTSFLFRYADD-TFTPAFVSTVGIDFKVKTVYRH-----EKRVK------ 73
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G ERY R+I Y G I ++D++ + ++Q WA +I T
Sbjct: 74 --LQIWDTAGQERY---RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT----- 123
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
+ +++GNK D+ +
Sbjct: 124 --YSWDN-----AQVILVGNKCDMEEE 143
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 8e-12
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 33/148 (22%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++++VGD+ VGKT +V G +FS TIG +K + +K
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTG-AFSERQGSTIGVDFTMKTLEIQ-----GKRVK----- 79
Query: 82 DFFVELWDISGHERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWAVEIATSGTF 138
+++WD +G ER+ R+I S NG I +D+++R + S+ W ++
Sbjct: 80 ---LQIWDTAGQERF---RTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRK---- 129
Query: 139 SAPLASGGPGGLPVPYVVIGNKADVAAK 166
A + ++IGNK+D++
Sbjct: 130 ---YAGSN-----IVQLLIGNKSDLSEL 149
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 8e-12
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 34/148 (22%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++L++GDSGVGK+SL+ +FS TIG ++ + +K
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADN-TFSGSYITTIGVDFKIRTVEIN-----GEKVK----- 59
Query: 82 DFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTF 138
+++WD +G ER+ R+I Y +GVI V+D++ + ++++W EI +
Sbjct: 60 ---LQIWDTAGQERF---RTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD- 112
Query: 139 SAPLASGGPGGLPVPYVVIGNKADVAAK 166
V +++GNK D +
Sbjct: 113 ------------DVCRILVGNKNDDPER 128
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 9e-12
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 40/174 (22%)
Query: 4 KERERENKELNGGPPTG-------QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIG 55
EN G P + ++L++GDSGVGK+ L+ +++ TIG
Sbjct: 9 HHSSGENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADD-TYTESYISTIG 67
Query: 56 CTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSIL---YSQINGVIF 112
++ I +IK +++WD +G ER+ R+I Y +G+I
Sbjct: 68 VDFKIRTIELD-----GKTIK--------LQIWDTAGQERF---RTITSSYYRGAHGIIV 111
Query: 113 VHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
V+D++ + + ++++W EI AS V +++GNK D+ K
Sbjct: 112 VYDVTDQESFNNVKQWLQEIDR-------YASEN-----VNKLLVGNKCDLTTK 153
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-11
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+++G GVGKTSL+ + T+G +K + I+
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-----GKKIR------ 76
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G ER+ SI Y G+I V+D++++ T L KW I
Sbjct: 77 --LQIWDTAGQERF---NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDK----- 126
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
AS +++GNK D
Sbjct: 127 --YASED-----AELLLVGNKLDCETD 146
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-11
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++++ GD+ VGK+S + + K S T+G +K +
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD-----GERTV------ 78
Query: 83 FFVELWDISGHERYKDCRSI---LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
++LWD +G ER+ RSI + + +GV+ ++D++ ++ ++++W I
Sbjct: 79 --LQLWDTAGQERF---RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIED----- 128
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 190
A VP +++GNKAD+ T G + G L
Sbjct: 129 --AAHET-----VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL 172
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-11
Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 33/154 (21%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++R+ V+GD+ GK+SL++ + GS + +T K + + G
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQY-KKEML----------VDG--- 51
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
+ V + + +G K + VIFV L + ++ + ++++
Sbjct: 52 QTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSS------ 100
Query: 141 PLASGGPGGLPVPYVVIGNKAD------VAAKEG 168
L G GGL + V ++ V
Sbjct: 101 -LRGEGRGGLALALVGTQDRISASSPRVVGDARA 133
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-11
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 33/148 (22%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ-TIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++L++GDSGVGK+ L+ +++ TIG ++ I +IK
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADD-TYTESYISTIGVDFKIRTIELD-----GKTIK----- 66
Query: 82 DFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTF 138
+++WD +G ER+ R+I Y +G+I V+D++ + + ++++W EI
Sbjct: 67 ---LQIWDTAGQERF---RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR---- 116
Query: 139 SAPLASGGPGGLPVPYVVIGNKADVAAK 166
AS V +++GNK D+ K
Sbjct: 117 ---YASEN-----VNKLLVGNKCDLTTK 136
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 2e-11
Identities = 26/145 (17%), Positives = 60/145 (41%), Gaps = 28/145 (19%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++G SG GK+S+ ++I S + ++ +G T+ V+H G+ + ++
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYS-AFDTRRLGATIDVEHSHLRFLGNMTLNL------- 56
Query: 83 FFVELWDISGHERYKDC-----RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGT 137
WD G + + + + ++ + +I V D+ ++ +A +
Sbjct: 57 -----WDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK 111
Query: 138 FSAPLASGGPGGLPVPYVVIGNKAD 162
+S P V+ +K D
Sbjct: 112 YS-------PD---AKIFVLLHKMD 126
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-11
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 31/147 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++G+S VGKTS + S T+G VK I IK
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRN-----DKRIK------ 58
Query: 83 FFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+++WD +G ERY R+I Y G I ++D++ + ++Q W+ +I T
Sbjct: 59 --LQIWDTAGLERY---RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT----- 108
Query: 140 APLASGGPGGLPVPYVVIGNKADVAAK 166
+ +++GNK D+ +
Sbjct: 109 --YSWDN-----AQVLLVGNKCDMEDE 128
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-11
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNS 74
G + +++VVGDS GKT+L+++ K F P + TV +
Sbjct: 1 GSNQNVKCKIVVVGDSQCGKTALLHVFAKD-CF--PENYVP-TVFENYTAS-------FE 49
Query: 75 IKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIA 133
I + + LWD SG Y + R + Y + V+ D+S+ T S+ KW EI
Sbjct: 50 IDT---QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 106
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
F P +++G K+D
Sbjct: 107 ---EFC-------PN---TKMLLVGCKSD 122
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 1e-10
Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 28/143 (19%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++ +VVGD VGKT L+ +F ++
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTN-AFPGEYIPTVFDNYSANVMVD-------------G 50
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT-KTSLQKWAVEIATSGTFS 139
+ + LWD +G E Y R + Y Q + + L + + KW E+
Sbjct: 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH----- 105
Query: 140 APLASGGPGGLPVPYVVIGNKAD 162
P P +++G K D
Sbjct: 106 -----HCPN---TPIILVGTKLD 120
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-10
Identities = 33/142 (23%), Positives = 52/142 (36%), Gaps = 28/142 (19%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++ + VGD VGKT L+ +F TV + G
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSN-TFPTDYVP---TVFDNFSAN-------VVVNG---A 54
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSA 140
+ LWD +G E Y R + Y + I L + + ++ KW E+ ++
Sbjct: 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK---HYA- 110
Query: 141 PLASGGPGGLPVPYVVIGNKAD 162
PG VP V++G K D
Sbjct: 111 ------PG---VPIVLVGTKLD 123
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 2e-10
Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 28/149 (18%)
Query: 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNS 74
GP ++ +VVGD VGKT L+ + F P + + TV + +
Sbjct: 12 HGPGALMLKCVVVGDGAVGKTCLLMSYANDA-F--PEEYVP-TVFDHYAVS-------VT 60
Query: 75 IKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT-KTSLQKWAVEIA 133
+ G + + + L+D +G E Y R + Y + + + + + ++W E+
Sbjct: 61 VGG---KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK 117
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
P VP+++IG + D
Sbjct: 118 E----------YAPN---VPFLLIGTQID 133
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-10
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83
+L++GDSGVGK+ L+ V+ TIG +K + +K
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-----GKKVK------- 70
Query: 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLA 143
++LWD +G ER++ + Y G+I V+D++ RT T++++W + A
Sbjct: 71 -LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNE-------HA 122
Query: 144 SGGPGGLPVPYVVIGNKAD 162
+ +++GNK+D
Sbjct: 123 NDE-----AQLLLVGNKSD 136
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-10
Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 40/155 (25%)
Query: 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTI------GCTVGVKHITYGSS 68
GG V+ ++VGD VGKTSLV + T +V + +
Sbjct: 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVR---- 69
Query: 69 GSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT-KTSLQK 127
++L D +G + + R + Y+ + + + + + +K
Sbjct: 70 ----------------LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEK 113
Query: 128 WAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
W EI P P +++G ++D
Sbjct: 114 WVPEIRCH----------CPK---APIILVGTQSD 135
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-10
Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 29/168 (17%)
Query: 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIK 76
+ RV+V G GVGK+SLV VKG+ TI TY I
Sbjct: 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE-------DTY------RQVIS 50
Query: 77 GDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIA-TS 135
D +++ D +G ++ + + S+ + I V ++ +++ L I
Sbjct: 51 CDKSV-CTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIK 109
Query: 136 GTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 183
G+ +P +++GNK D +E + + A++W
Sbjct: 110 GSVE-----------DIPVMLVGNKCDETQREVDTREAQAV---AQEW 143
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 5e-10
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 34/150 (22%)
Query: 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIK 76
P V+V++VGD G GKTSL+ + G + P TV +++ ++
Sbjct: 30 PGVRSVKVVLVGDGGCGKTSLLMVFADG---AFPESYTP-TVFERYMVN---------LQ 76
Query: 77 GDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ----KWAVEI 132
+ + +WD +G + Y R + Y + ++ D++ S +W E+
Sbjct: 77 VKGKP-VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSP---NSFDNIFNRWYPEV 132
Query: 133 ATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
F VP +V+G K D
Sbjct: 133 N---HFC-------KK---VPIIVVGCKTD 149
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 5e-10
Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 37/163 (22%)
Query: 7 ERENKELNG---GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHI 63
REN G P + ++++VGD GKT+++ ++ K + TV +
Sbjct: 10 GRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKD-CYPETYVP---TVFENYT 65
Query: 64 TYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKT 123
+ + + LWD SG Y + R + YS + V+ D+S+
Sbjct: 66 AC-------LETEE---QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP---E 112
Query: 124 SLQ----KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
++ KW EI + P ++IG K D
Sbjct: 113 TVDSALKKWRTEIL---DYC-------PS---TRVLLIGCKTD 142
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 7e-10
Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 35/183 (19%)
Query: 4 KERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV--- 60
+ L T + +++VVG GVGK++L +++ F T+
Sbjct: 5 HHHSSGRENLYFQGMT-EYKLVVVGAGGVGKSALTIQLIQNH-FV---DEYDPTIEDSYR 59
Query: 61 KHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR 120
K + I G +++ D +G E Y R G + V ++ +
Sbjct: 60 KQVV----------IDG---ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSK 106
Query: 121 TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180
+ + + +I VP V++GNK D+ + + L A
Sbjct: 107 SFADINLYREQIKRVK-----------DSDDVPMVLVGNKCDLPTRTVDTKQAHEL---A 152
Query: 181 RQW 183
+ +
Sbjct: 153 KSY 155
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 8e-10
Identities = 23/147 (15%), Positives = 57/147 (38%), Gaps = 31/147 (21%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+++V +VG+ GK++LV+ + G ++ + G K I + G
Sbjct: 20 ELKVGIVGNLSSGKSALVHRYLTG-TYVQEESPEGGRF-KKEIV----------VDG--- 64
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
+ + + + D G + + ++ V+FV L + ++ + + + +
Sbjct: 65 QSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF----- 114
Query: 141 PLASGGPGGLPVPYVVIGNKADVAAKE 167
VP V++G + ++A
Sbjct: 115 ------RNASEVPMVLVGTQDAISAAN 135
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 8e-10
Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 34/152 (22%)
Query: 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNS 74
+ +++VVGD GKT L+ + K F TV ++
Sbjct: 19 YFQSMIRKKLVVVGDGACGKTCLLIVFSKD-EFPEVYVP---TVFENYVAD--------- 65
Query: 75 IKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ----KWAV 130
I+ D ++ + LWD +G E Y R + Y + ++ + SL+ KW
Sbjct: 66 IEVDGKQ-VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSP---DSLENIPEKWVP 121
Query: 131 EIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
E+ F P VP +++ NK D
Sbjct: 122 EVK---HFC-------PN---VPIILVANKKD 140
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 9e-10
Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
RV V G GVGK+SLV VKG+ T+ TY I D
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-------DTY------RQVISCDKSI- 50
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++ D +G ++ + + S+ + I V+ ++ R++ L+ +I
Sbjct: 51 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-- 108
Query: 143 ASGGPGGLPVPYVVIGNKAD 162
+P +++GNK D
Sbjct: 109 --------SIPIMLVGNKCD 120
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 9e-10
Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 34/166 (20%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV---KHITYGSSGSSSNSIKG 77
+ +++VVG GVGK++L +++ F T+ K + I G
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNH-FV---DECDPTIEDSYRKQVV----------IDG 48
Query: 78 DSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGT 137
+++ D +G E Y R G + V ++ ++ + ++ +I
Sbjct: 49 ---ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK- 104
Query: 138 FSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 183
VP V++GNK+D+AA+ + +L AR +
Sbjct: 105 ----------DSDDVPMVLVGNKSDLAARTVESRQAQDL---ARSY 137
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 1e-09
Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 26/140 (18%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+VL++G GVGK++L I G ++ G TY SI D E +
Sbjct: 4 KVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAG-------HTY------DRSIVVDGE-E 48
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+ ++DI + + + + + V+ ++ + + + V++ +
Sbjct: 49 ASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR------ 102
Query: 143 ASGGPGGLPVPYVVIGNKAD 162
VP +++GNK+D
Sbjct: 103 -----QTDDVPIILVGNKSD 117
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 28/142 (19%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++++VVGD VGKT L+ KG P+ + TV +K +E
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKG-EI--PTAYVP-TVFENFSH---------VMKYKNEE 70
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSA 140
F + LWD +G E Y R + Y+ + V+ ++ R + ++ KW EI +
Sbjct: 71 -FILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK---HYI- 125
Query: 141 PLASGGPGGLPVPYVVIGNKAD 162
V++G K D
Sbjct: 126 ------DT---AKTVLVGLKVD 138
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-09
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 28/149 (18%)
Query: 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNS 74
+ +++VVGDS GKT+L+++ K F P + TV +
Sbjct: 22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKD-CF--PENYVP-TVFENYTAS-------FE 70
Query: 75 IKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIA 133
I + + LWD SG Y + R + Y + V+ D+S+ T S+ KW EI
Sbjct: 71 IDT---QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 127
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
F P +++G K+D
Sbjct: 128 ---EFC-------PN---TKMLLVGCKSD 143
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-09
Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 28/150 (18%)
Query: 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSN 73
N ++ +VVGD VGKT L+ + P + I TV +
Sbjct: 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIP-TVFDNYSAN-------- 70
Query: 74 SIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT-KTSLQKWAVEI 132
+ D + + LWD +G E Y R + Y Q + + L + + KW E+
Sbjct: 71 -VMVDGKP-VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV 128
Query: 133 ATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
P P +++G K D
Sbjct: 129 RH----------HCPN---TPIILVGTKLD 145
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-09
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 34/146 (23%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ ++++VGD GKT L+ + K P + TV +I + G
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKD---QFPEVYVP-TVFENYIAD-------IEVDG--- 70
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ----KWAVEIATSG 136
+ + LWD +G E Y R + Y + ++ + SL+ KW E+
Sbjct: 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP---DSLENIPEKWTPEVK--- 124
Query: 137 TFSAPLASGGPGGLPVPYVVIGNKAD 162
F P VP +++GNK D
Sbjct: 125 HFC-------PN---VPIILVGNKKD 140
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-09
Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV---KHITYGSSGSSSNSIKG 77
+ +++VVG GVGK++L +++ F T+ K + I G
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNH-FV---DEYDPTIEDSYRKQVV----------IDG 49
Query: 78 DSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGT 137
+++ D +G E Y R G + V ++ ++ + + +I
Sbjct: 50 ---ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVK- 105
Query: 138 FSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 183
VP V++GNK D+ ++ + +L AR +
Sbjct: 106 ----------DSEDVPMVLVGNKCDLPSRTVDTKQAQDL---ARSY 138
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 4e-09
Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 25/146 (17%)
Query: 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIK 76
PP+ +++VVG GVGK++L ++ S TI + K + +
Sbjct: 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICS----------VD 53
Query: 77 GDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSG 136
G +++ D +G E + R +G + V ++ R++ + K +I
Sbjct: 54 G---IPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRV- 109
Query: 137 TFSAPLASGGPGGLPVPYVVIGNKAD 162
P V++GNKAD
Sbjct: 110 ----------KDRDDFPVVLVGNKAD 125
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 6e-09
Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 32/167 (19%)
Query: 8 RENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGS 67
EN + +V++ + G +GVGK++LV + T+ TY
Sbjct: 15 TENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE-------STY-- 65
Query: 68 SGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQK 127
+ D E +E+ D +G E R G + V+D++ R + +
Sbjct: 66 ----RHQATIDDE-VVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLP 119
Query: 128 WAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD------VAAKEG 168
+ V +++GNKAD V+ +EG
Sbjct: 120 LKNILDEIK-----------KPKNVTLILVGNKADLDHSRQVSTEEG 155
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 6e-09
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 31/158 (19%)
Query: 8 RENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSR---PSQTIGCTVGVKHIT 64
REN G P +V+++G VGKTSL + V+G FS P T+ T
Sbjct: 11 RENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEG-EFSEGYDP--TVE-------NT 60
Query: 65 YGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTS 124
Y S + + +F + L D +G + Y ++G + V+ ++ +
Sbjct: 61 Y------SKIVTLGKD-EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQV 113
Query: 125 LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162
++ ++ G VP V++GNKAD
Sbjct: 114 IESLYQKLHEG-----------HGKTRVPVVLVGNKAD 140
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 7e-09
Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 33/145 (22%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V++VG+SGVGK++L S + I + +
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIM----------VDK---EE 71
Query: 83 FFVELWDISGHERYKDC-RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI----ATSGT 137
+ ++DI R + + V ++ RR+ + + + + +
Sbjct: 72 VTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD- 130
Query: 138 FSAPLASGGPGGLPVPYVVIGNKAD 162
+P +++GNK+D
Sbjct: 131 --------------LPVILVGNKSD 141
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 8e-09
Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 25/140 (17%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V++VG GVGK++L + T +Y + D E
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-------DSY------RKKVVLDGEE- 61
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++ D +G E Y R + G + V +++ + + + +I
Sbjct: 62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK------ 115
Query: 143 ASGGPGGLPVPYVVIGNKAD 162
VP++++GNK+D
Sbjct: 116 -----EDENVPFLLVGNKSD 130
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-08
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 31/145 (21%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSR---PSQTIGCTVGVKHITYGSSGSSSNSIKG 77
+ +++V+G GVGK++L V+G F P TI +Y ++
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGI-FVEKYDP--TIE-------DSY------RKQVEV 46
Query: 78 DSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGT 137
D ++ +E+ D +G E++ R + G V+ ++ + T LQ +I
Sbjct: 47 DCQQ-CMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK- 104
Query: 138 FSAPLASGGPGGLPVPYVVIGNKAD 162
VP +++GNK D
Sbjct: 105 ----------DTEDVPMILVGNKCD 119
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-08
Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 25/146 (17%)
Query: 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIK 76
P + ++ ++G VGK+SL V+G TI T+ + I
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE-------NTF------TKLIT 48
Query: 77 GDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSG 136
+ + + ++L D +G + Y ING I V+ ++ ++ ++ ++
Sbjct: 49 VNGQE-YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDM- 106
Query: 137 TFSAPLASGGPGGLPVPYVVIGNKAD 162
G + +P +++GNK D
Sbjct: 107 ----------VGKVQIPIMLVGNKKD 122
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-08
Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 31/143 (21%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV---KHITYGSSGSSSNSIKGDS 79
+V++VG GVGK++L + F + T K + + G
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDE-FVEDYEP---TKADSYRKKVV----------LDG-- 49
Query: 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFS 139
+ +++ D +G E Y R + G + V +++ + + + +I
Sbjct: 50 -EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV---- 104
Query: 140 APLASGGPGGLPVPYVVIGNKAD 162
VP++++GNK+D
Sbjct: 105 -------KEDENVPFLLVGNKSD 120
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 1e-08
Identities = 51/369 (13%), Positives = 101/369 (27%), Gaps = 107/369 (28%)
Query: 6 RERENKELNGG-----PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSR--PSQ----TI 54
R + +L P VL+ G G GKT + + + +
Sbjct: 133 RLQPYLKLRQALLELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 55 G---------------CTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99
+ T S SS+ ++ S + L + Y++C
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK---SKPYENC 246
Query: 100 RSIL---YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 156
+L + +LS + T+ K + ++ T + L
Sbjct: 247 LLVLLNVQN--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------ 298
Query: 157 IGNKADVAAKEGTRGSSGNLVDAARQWVE-KQGLLPSSEEL----PLTESFPGGGGLIAA 211
T +L+ ++++ + LP E+ P S +IA
Sbjct: 299 ------------TPDEVKSLL---LKYLDCRPQDLP--REVLTTNPRRLS------IIAE 335
Query: 212 A-----------KEARYDK--EAVMKFFRML----IRRRY-----FSDEMPAPNP----- 244
+ K DK + +L R+ + F P
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 245 WSISPTHKPIQRLDE--NSSDDDKFYSSGYSSDPYNMLPPLPAQRNLTPPPTLYPQQPVS 302
W + +++ S +K S +P + L S
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-----IPSI--YLELKVKLENEYALHRS 448
Query: 303 VQENYNLPR 311
+ ++YN+P+
Sbjct: 449 IVDHYNIPK 457
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-08
Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 27/142 (19%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V++VG+SGVGK++L + I + +
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIM----------VDK---EE 50
Query: 83 FFVELWDISGHERYKDC-RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI-ATSGTFSA 140
+ ++DI + + + V ++ RR+ + + + + + A
Sbjct: 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD- 109
Query: 141 PLASGGPGGLPVPYVVIGNKAD 162
+P +++GNK+D
Sbjct: 110 -----------LPVILVGNKSD 120
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-08
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 25/142 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ +V+V+G GVGK++L V G+ + TI K I +
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIE----------VDS--- 48
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
+E+ D +G E++ R + G I V+ L +++ ++ +I
Sbjct: 49 SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---- 104
Query: 141 PLASGGPGGLPVPYVVIGNKAD 162
VP +++GNK D
Sbjct: 105 -------RYEKVPVILVGNKVD 119
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-08
Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 25/140 (17%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++VVGD GVGK++L + TI + +KH I +
Sbjct: 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTE----------IDN---QW 65
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++ D +G E + R +G + V+ ++ + + + ++ I
Sbjct: 66 AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK------ 119
Query: 143 ASGGPGGLPVPYVVIGNKAD 162
P +++ NK D
Sbjct: 120 -----DRESFPMILVANKVD 134
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
Q VL VG GKT L ++ G T S SS K ++
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRD---------------TQTSITDSSAIYKVNNN 51
Query: 81 RDFFVELWDISGHERYKD-CRSILYSQINGVIFVHDLSQR 119
R + L D+ GHE + S V+FV D +
Sbjct: 52 RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF 91
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-08
Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 30/165 (18%)
Query: 10 NKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSG 69
+E +V + ++G G GK++L + S + TY
Sbjct: 10 GRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLE-------DTY---- 58
Query: 70 SSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWA 129
SS ++ + + + D + + ++C + + + V+ + R++ S +
Sbjct: 59 SSEETVDH---QPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYL 114
Query: 130 VEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD------VAAKEG 168
+A + +P +++GNK D V EG
Sbjct: 115 ELLALHAKETQR---------SIPALLLGNKLDMAQYRQVTKAEG 150
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-08
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
R+L++G GK+S+ ++ S + + T + I S +
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDD----------ISNSSFVN 70
Query: 83 FFVELWDISGHERYKD---CRSILYSQINGVIFVHDLSQR 119
F ++WD G + D +++ +I+V D
Sbjct: 71 F--QIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD 108
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-08
Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 25/140 (17%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V++VG GVGK++L + T +Y + D E
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-------DSY------RKKVVLDGEE- 65
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++ D +G E Y R + G + V +++ + + + +I
Sbjct: 66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV------- 118
Query: 143 ASGGPGGLPVPYVVIGNKAD 162
VP++++GNK+D
Sbjct: 119 ----KEDENVPFLLVGNKSD 134
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 40/164 (24%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVG---VKHITYGSSGSSSNSIKGD 78
++ + VGD VGKT ++ F P+ I TV ++
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNK-F--PTDYIP-TVFDNFSANVAVD------------ 53
Query: 79 SERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ----KWAVEIAT 134
+ + LWD +G E Y R + Y + + L + S + KW E+
Sbjct: 54 -GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISK---ASYENVLKKWMPELR- 108
Query: 135 SGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178
F+ P VP V++G K D+ +G N++
Sbjct: 109 --RFA-------PN---VPIVLVGTKLDLRDDKGYLADHTNVIT 140
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 22/141 (15%), Positives = 56/141 (39%), Gaps = 24/141 (17%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
RV+++G+ GVGK++L N+ S + +G + + + G+S
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLM----------VDGESAT 57
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
+++W+ G + + + V+ ++ R + + +++ +
Sbjct: 58 IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR----- 110
Query: 142 LASGGPGGLPVPYVVIGNKAD 162
+P +++GNK+D
Sbjct: 111 ------QTEDIPIILVGNKSD 125
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-07
Identities = 22/141 (15%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 23 RVLVVGDSGVGKTSLVN-LIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
RV+++G+ GVGK++L N S + +G + + + G+S
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLM----------VDGESAT 88
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
+++W+ G + + + V+ ++ R + + +++ +
Sbjct: 89 IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA------ 140
Query: 142 LASGGPGGLPVPYVVIGNKAD 162
+P +++GNK+D
Sbjct: 141 -----RQTEDIPIILVGNKSD 156
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 7e-07
Identities = 22/149 (14%), Positives = 52/149 (34%), Gaps = 33/149 (22%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQT--IGCTVGVKHITYGSSGSSSNSIKGDSER 81
VL++G GK+S+ ++ P T + T + +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQ---PLDTLYLESTSNPSLEHFSTLID----------- 47
Query: 82 DFFVELWDISGHERYKD---CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTF 138
+ + ++ G Y + L+ + +++V D SQ ++ A+ I +
Sbjct: 48 ---LAVMELPGQLNYFEPSYDSERLFKSVGALVYVID-SQDEYINAITNLAMIIEYAYKV 103
Query: 139 SAPLASGGPGGLPVPYVVIGNKADVAAKE 167
+ P + V+ +K D +++
Sbjct: 104 N-------PS---INIEVLIHKVDGLSED 122
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 8e-07
Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 35/146 (23%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
RV+++GD GVGKTSL +L + +G V + +T + G D
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGK-QERDLHEQLGEDVYERTLT----------VDG---ED 51
Query: 83 FFVELWDISGHERYKDC--RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI----ATSG 136
+ + D E+ + + + V+ ++ R + S + +++
Sbjct: 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH 111
Query: 137 TFSAPLASGGPGGLPVPYVVIGNKAD 162
VP +++GNKAD
Sbjct: 112 ---------------VPIILVGNKAD 122
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 9e-07
Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 37/148 (25%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
Q+R+L+VG GKT+++ + K TIG V+ + Y +
Sbjct: 29 QMRILMVGLDAAGKTTILYKL-KLGEIVTTIPTIGFN--VETVEYKNI------------ 73
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR----TKTSLQKWAVEIATSG 136
F V WD+ G ++ + + G+IFV D + R + LQK E
Sbjct: 74 -CFTV--WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRD 130
Query: 137 TFSAPLASGGPGGLPVPYVVIGNKADVA 164
+V NK D+
Sbjct: 131 ---------------AVLLVFANKQDMP 143
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 43/150 (28%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++R+L++G G GKT+++ + + TIG V+ +TY ++K
Sbjct: 7 EMRILILGLDGAGKTTILYRL-QVGEVVTTIPTIGFN--VETVTYK-------NLK---- 52
Query: 81 RDFFVELWDISGHERYKDCRSI---LYSQINGVIFVHDLSQRR----TKTSLQKWAVEIA 133
F V WD+ G R YS + VI+V D R +K+ L E
Sbjct: 53 --FQV--WDLGGLTSI---RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 105
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKADV 163
VV NK D+
Sbjct: 106 LRK---------------AILVVFANKQDM 120
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 43/149 (28%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
+R+L+VG GKT+++ + K TIG V+ + Y +
Sbjct: 1 MRILMVGLDAAGKTTILYKL-KLGEIVTTIPTIGFN--VETVEYKNI------------- 44
Query: 82 DFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRR----TKTSLQKWAVEIAT 134
F V WD+ G ++ R + + G+IFV D + R + L + E
Sbjct: 45 SFTV--WDVGGQDKI---RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL 99
Query: 135 SGTFSAPLASGGPGGLPVPYVVIGNKADV 163
+V NK D+
Sbjct: 100 RD---------------AVLLVFANKQDL 113
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 37/147 (25%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++R+L++G G GKT+++ + + TIG V+ ++Y +
Sbjct: 18 ELRILILGLDGAGKTTILYRL-QIGEVVTTKPTIGFN--VETLSYKNL------------ 62
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR----TKTSLQKWAVEIATSG 136
V WD+ G + Y+ VIFV D + + L E
Sbjct: 63 -KLNV--WDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQD 119
Query: 137 TFSAPLASGGPGGLPVPYVVIGNKADV 163
+V NK D
Sbjct: 120 ---------------AALLVFANKQDQ 131
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-06
Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 52/170 (30%)
Query: 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGV 60
+ K + ++E VR+L++G GKT+L+ + S + T G +
Sbjct: 5 ILRKLKSAPDQE---------VRILLLGLDNAGKTTLLKQL-ASEDISHITPTQGFN--I 52
Query: 61 KHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLS 117
K + K V WDI G + R + + +I+V D +
Sbjct: 53 KSVQS-------QGFK------LNV--WDIGGQRKI---RPYWRSYFENTDILIYVIDSA 94
Query: 118 QRR----TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163
R+ T L + E S VP ++ NK D+
Sbjct: 95 DRKRFEETGQELTELLEEEKLSC---------------VPVLIFANKQDL 129
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 33/150 (22%), Positives = 50/150 (33%), Gaps = 43/150 (28%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ +V++VG GKT+++ + S TIG V+ I ++
Sbjct: 16 EHKVIIVGLDNAGKTTILYQF-SMNEVVHTSPTIGSN--VEEIVINNT------------ 60
Query: 81 RDFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRR----TKTSLQKWAVEIA 133
F + WDI G E RS Y+ VI V D + R T+ L K
Sbjct: 61 -RFLM--WDIGGQESL---RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 114
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKADV 163
++ NK DV
Sbjct: 115 LRK---------------AGLLIFANKQDV 129
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 6e-06
Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 43/150 (28%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++R+L++G GKT+++ G S T+G +K + +
Sbjct: 18 ELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFN--IKTLEH--------------- 59
Query: 81 RDFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRR----TKTSLQKWAVEIA 133
R F + +WD+ G + RS + +G+I+V D + R+ + LQ VE
Sbjct: 60 RGFKLNIWDVGGQKSL---RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 116
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKADV 163
+G ++ NK D+
Sbjct: 117 LAG---------------ATLLIFANKQDL 131
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 8e-06
Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 43/150 (28%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++RVL++G GKTS++ + T+G ++ + Y +I
Sbjct: 22 KIRVLMLGLDNAGKTSILYRL-HLGDVVTTVPTVGVN--LETLQYK-------NIS---- 67
Query: 81 RDFFVELWDISGHERYKDCRSI---LYSQINGVIFVHDLSQRR----TKTSLQKWAVEIA 133
F V WD+ G R +S + VI+V D + R K L E
Sbjct: 68 --FEV--WDLGGQTGV---RPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE 120
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKADV 163
++ NK D+
Sbjct: 121 LRK---------------SLLLIFANKQDL 135
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 41/151 (27%)
Query: 21 QVRVLVVGDSGVGKTSLVN-LIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDS 79
+V VL +G GKT+++N L + TIG + ++ S+
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSS-------SLS--- 68
Query: 80 ERDFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRR----TKTSLQKWAVEI 132
F V +D+SG RY R++ Y + +IFV D S R K L
Sbjct: 69 ---FTV--FDMSGQGRY---RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTL---- 116
Query: 133 ATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163
L +P + NK D+
Sbjct: 117 ---------LNHPDIKHRRIPILFFANKMDL 138
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 34/150 (22%), Positives = 51/150 (34%), Gaps = 43/150 (28%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ +V++VG GKT+++ + S TIG V+ I N+ +
Sbjct: 21 EHKVIIVGLDNAGKTTILYQF-SMNEVVHTSPTIGSN--VEEIVI-------NNTR---- 66
Query: 81 RDFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRR----TKTSLQKWAVEIA 133
F + WDI G E RS Y+ VI V D + R T+ L K
Sbjct: 67 --FLM--WDIGGQESL---RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 119
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKADV 163
++ NK DV
Sbjct: 120 LRK---------------AGLLIFANKQDV 134
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 23/107 (21%)
Query: 13 LNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSS 72
+GG + Q +++ G GKTSL+ L+ S T+ S
Sbjct: 40 GSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSV----RPTV---------------VSQ 80
Query: 73 NSIKGDSERDFFVELWDISGHERYKDCRSILYSQ----INGVIFVHD 115
+ V L D GH + + S + G+IF+ D
Sbjct: 81 EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD 127
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 43/150 (28%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+++ +G GKT+L++++ K + T+ T + +T
Sbjct: 25 TGKLVFLGLDNAGKTTLLHML-KDDRLGQHVPTLHPT--SEELTIAG------------- 68
Query: 81 RDFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRR----TKTSLQKWAVEIA 133
+D+ GH + R + ING++F+ D + +K L +
Sbjct: 69 --MTFTTFDLGGHIQA---RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET 123
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKADV 163
+ VP +++GNK D
Sbjct: 124 IAN---------------VPILILGNKIDR 138
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-05
Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 42/150 (28%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++ + +VG GKT+ VN+I G T+G ++ IT G ++
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN--MRKITKG-------NVT---- 68
Query: 81 RDFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRR----TKTSLQKWAVEIA 133
+ WDI G R+ RS+ ++ ++++ D + + +K L +
Sbjct: 69 --IKL--WDIGGQPRF---RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ 121
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKADV 163
G +P +V+GNK D+
Sbjct: 122 LQG---------------IPVLVLGNKRDL 136
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-05
Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 43/150 (28%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++L +G GKT+L++++ K + T T + + G +IK
Sbjct: 23 HGKLLFLGLDNAGKTTLLHML-KNDRLATLQPTWHPT--SEELAIG-------NIK---- 68
Query: 81 RDFFVELWDISGHERYKDCRSIL---YSQINGVIFVHDLSQRR----TKTSLQKWAVEIA 133
F +D+ GH + R + + ++NG++F+ D + + L
Sbjct: 69 --FTT--FDLGGHIQA---RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE 121
Query: 134 TSGTFSAPLASGGPGGLPVPYVVIGNKADV 163
VP+V++GNK D
Sbjct: 122 LKD---------------VPFVILGNKIDA 136
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 29/104 (27%)
Query: 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGD 78
+ Q +++ G GKTSL+ L+ S T+ S +
Sbjct: 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV----RPTV---------------VSQEPLSAA 50
Query: 79 SERDFFVELWDISGHERYKDCRSIL-------YSQINGVIFVHD 115
V L D GH + R L + G+IF+ D
Sbjct: 51 DYDGSGVTLVDFPGHVKL---RYKLSDYLKTRAKFVKGLIFMVD 91
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 333 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.97 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.97 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.97 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.97 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.97 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.97 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.97 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.97 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.97 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.97 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.97 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.97 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.97 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.97 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.97 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.97 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.97 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.97 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.97 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.97 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.97 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.97 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.97 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.97 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.97 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.97 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.97 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.97 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.97 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.97 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.97 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.97 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.97 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.97 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.97 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.97 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.97 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.97 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.97 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.97 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.96 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.96 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.96 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.96 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.96 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.96 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.96 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.96 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.96 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.96 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.96 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.96 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.96 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.96 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.96 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.96 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.96 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.96 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.96 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.96 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.96 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.96 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.96 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.96 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.96 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.96 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.96 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.96 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.96 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.95 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.95 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.95 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.95 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.95 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.95 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.95 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.95 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.95 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.95 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.95 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.95 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.95 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.95 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.95 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.94 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.94 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.94 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.94 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.94 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.94 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.94 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.94 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.94 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.94 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.94 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.93 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.89 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.93 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.93 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.93 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.93 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.92 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.92 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.92 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.92 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.91 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.91 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.91 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.91 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.9 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.9 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.9 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.9 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.9 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.89 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.89 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.88 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.88 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.87 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.87 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.87 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.86 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.86 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.84 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.84 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.84 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.83 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.83 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.83 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.83 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.81 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.8 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.8 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.8 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.8 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.79 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.79 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.79 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.79 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.79 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.79 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.79 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.79 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.78 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.78 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.78 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.78 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.77 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.76 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.76 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.76 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.76 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.76 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.76 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.76 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.75 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.75 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.74 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.74 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.74 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.74 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.74 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.74 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.73 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.72 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.71 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.71 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.71 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.7 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.69 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.68 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.66 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.65 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.65 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.64 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.64 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.63 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.63 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.63 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.62 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.62 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.6 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.6 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.6 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.59 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.58 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.57 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.56 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.55 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.52 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.5 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.5 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.5 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.49 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.4 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.38 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.34 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.34 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.33 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.33 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.27 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.25 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.21 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.21 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.13 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.1 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.01 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.99 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.94 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.79 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.74 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.58 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.55 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.5 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.41 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.35 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.34 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.33 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.18 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.11 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.1 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 97.85 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 97.81 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.76 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.69 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 97.55 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.46 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.45 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.34 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.18 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.16 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.04 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 96.61 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 96.42 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.35 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 96.26 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.16 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 96.01 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 95.95 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 95.95 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 95.91 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 95.9 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 95.9 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.89 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 95.82 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 95.78 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 95.74 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 95.73 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 95.69 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 95.67 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 95.66 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 95.55 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 95.51 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.37 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 95.36 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 95.33 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 95.32 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 95.29 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 95.27 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 95.26 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 95.25 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 95.25 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 95.22 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 95.21 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 95.21 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 95.19 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 95.18 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.16 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 95.16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 95.16 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.16 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 95.15 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 95.15 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 95.14 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 95.13 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 95.1 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.1 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 95.09 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.08 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 95.08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 95.08 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 95.05 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 95.04 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 95.04 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.03 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.02 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.02 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 95.02 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 95.01 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 95.01 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 95.01 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.99 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 94.98 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 94.97 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 94.95 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 94.93 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.91 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 94.89 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 94.88 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 94.86 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 94.86 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.84 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.84 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 94.83 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.8 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 94.77 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.74 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 94.74 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 94.73 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 94.73 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.72 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 94.67 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 94.67 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 94.66 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 94.56 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.48 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 94.47 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.46 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 94.41 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 94.39 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 94.37 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 94.36 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.33 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 94.33 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 94.3 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 94.28 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 94.28 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.27 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 94.26 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 94.26 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 94.26 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 94.25 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 94.24 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.21 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 94.21 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 94.2 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 94.16 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 94.16 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.15 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 94.11 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.09 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 94.08 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 94.08 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.05 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 93.98 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 93.97 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 93.96 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 93.94 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 93.93 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 93.91 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 93.91 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 93.9 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 93.89 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 93.87 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 93.85 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 93.85 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 93.85 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 93.84 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 93.84 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 93.83 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 93.78 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 93.78 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 93.78 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 93.77 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 93.76 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 93.74 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 93.73 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 93.73 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 93.71 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 93.7 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 93.69 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 93.64 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 93.64 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.62 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 93.59 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 93.58 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 93.58 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 93.57 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 93.53 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 93.52 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 93.52 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 93.49 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 93.48 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 93.39 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 93.38 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 93.32 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 93.3 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 93.29 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 93.27 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 93.25 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 93.24 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 93.24 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 93.23 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 93.23 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 93.23 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 93.21 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 93.14 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 93.14 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 93.12 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 93.1 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 93.06 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 93.06 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 93.06 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 93.03 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 93.0 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 92.99 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 92.94 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 92.9 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 92.89 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 92.83 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 92.73 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 92.71 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 92.66 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 92.63 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 92.58 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 92.54 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 92.54 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 92.53 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 92.44 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 92.44 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 92.44 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 92.36 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 92.19 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 92.15 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 92.08 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 92.08 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 92.04 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 91.92 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 91.92 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 91.91 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.86 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 91.81 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 91.78 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 91.78 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 91.77 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 91.77 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 91.75 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 91.72 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 91.71 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 91.71 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 91.61 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 91.46 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 91.45 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 91.43 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 91.4 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 91.4 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 91.36 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 91.35 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 91.33 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 91.29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 91.27 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 91.27 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 91.25 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 91.24 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 91.23 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 91.21 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 91.1 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 91.05 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 91.03 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 90.94 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 90.91 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 90.89 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 90.86 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 90.78 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 90.72 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 90.72 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 90.6 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 90.53 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 90.52 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 90.44 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 90.44 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 90.42 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 90.4 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 90.35 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 90.34 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 90.32 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 90.19 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 90.16 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 89.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 89.95 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 89.94 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 89.82 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 89.69 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 89.68 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 89.68 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 89.68 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 89.67 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 89.66 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 89.6 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 89.59 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 89.58 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 89.56 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 89.56 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 89.49 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 89.46 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 89.22 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 89.21 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 89.21 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=271.81 Aligned_cols=170 Identities=23% Similarity=0.327 Sum_probs=140.4
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
.+.|.+++||+|||++|||||||+++|+++.|...+.+|+|.++..+.+.++ +..+.++||||+|++
T Consensus 7 ~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~-------------~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-------------DRTIRLQLWDTAGLE 73 (216)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECS-------------SCEEEEEEECCSCTT
T ss_pred CCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEec-------------ceEEEEEEEECCCch
Confidence 3456788999999999999999999999999999999999999999888876 678999999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
+|..++..|++.++++|+|||++++.||+++..|+..+..... .++|+||||||+||.+. |.|+.
T Consensus 74 ~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~------------~~~piilVgNK~Dl~~~--r~V~~- 138 (216)
T 4dkx_A 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG------------SDVIIMLVGNKTDLADK--RQVSI- 138 (216)
T ss_dssp TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT------------TSSEEEEEEECTTCGGG--CCSCH-
T ss_pred hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC------------CCCeEEEEeeccchHhc--CcccH-
Confidence 9999999999999999999999999999999999999987642 47999999999999876 77874
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++++|++++ ++|+| ||||+|.||+++|+.|++.+..
T Consensus 139 ---~e~~~~a~~~~-------~~~~e---------~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 139 ---EEGERKAKELN-------VMFIE---------TSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp ---HHHHHHHHHHT-------CEEEE---------EBTTTTBSHHHHHHHHHHHC--
T ss_pred ---HHHhhHHHHhC-------CeeEE---------EeCCCCcCHHHHHHHHHHHHHh
Confidence 88999999998 46888 9999999999999999887654
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=227.72 Aligned_cols=169 Identities=26% Similarity=0.431 Sum_probs=140.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.||||+|+++|.
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~ 92 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-------------GKRVKLQIWDTAGQERFR 92 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEET-------------TEEEEEEEECCTTCGGGH
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEEC-------------CEEEEEEEEECCCcHhHH
Confidence 4567999999999999999999999999988888999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~NK~Dl~~~--~~v~----~ 154 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG------------SNIVQLLIGNKSDLSEL--REVS----L 154 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----H
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECCccccc--cccC----H
Confidence 9999999999999999999999999999999999988742 37899999999999865 5555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++++.+++. +|+| |||++|.|++++|+.+.+.+.++
T Consensus 155 ~~~~~~~~~~~~~------~~~~---------~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 155 AEAQSLAEHYDIL------CAIE---------TSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHTTCS------EEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC------EEEE---------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 7788999988742 5777 99999999999999999888764
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=226.71 Aligned_cols=169 Identities=25% Similarity=0.409 Sum_probs=149.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.||||+|+++|.
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~l~Dt~G~~~~~ 89 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-------------GEKVKLQIWDTAGQERFR 89 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGH
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEECCCcHHHH
Confidence 4567999999999999999999999999988889999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...+++.+|++|+|||++++.+|+.+..|+.++..... .++|++||+||+|+... +.+..
T Consensus 90 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~NK~Dl~~~--~~v~~---- 151 (201)
T 2ew1_A 90 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS------------NKVITVLVGNKIDLAER--REVSQ---- 151 (201)
T ss_dssp HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CSSCH----
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECCCCccc--cccCH----
Confidence 9999999999999999999999999999999999987642 36899999999999754 55553
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++++++..+ ++|+| |||++|.|++++|+.+++.+.++.
T Consensus 152 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 152 QRAEEFSEAQD-------MYYLE---------TSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp HHHHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 77888888877 46888 999999999999999999887754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-31 Score=224.31 Aligned_cols=169 Identities=23% Similarity=0.411 Sum_probs=120.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.||||+|++++..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 72 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-------------GKRIKLQIWDTAGQERFRT 72 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEET-------------TEEEEEEEEEC--------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEEC-------------CEEEEEEEEcCCCChhhhh
Confidence 456899999999999999999999998888888999999988888776 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+.+. +.+. .+
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~v~----~~ 134 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS------------ADVEKMILGNKCDVNDK--RQVS----KE 134 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEEC--CCSC--CCSC----HH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECccCCcc--CcCC----HH
Confidence 999999999999999999999999999999999987642 36899999999999865 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+++++++.++ ++|+| |||++|.|++++|+.+.+.+.++..
T Consensus 135 ~~~~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 135 RGEKLALDYG-------IKFME---------TSAKANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp HHHHHHHHHT-------CEEEE---------CCC---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 7889998887 46788 9999999999999999998877643
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=229.68 Aligned_cols=173 Identities=21% Similarity=0.305 Sum_probs=141.9
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
.+.+....+||+|+|++|||||||+++|+++.+...+.+|++.++ .+.+.++ +..+.+.||||+|+
T Consensus 20 ~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~ 85 (214)
T 3q3j_B 20 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETE-------------EQRVELSLWDTSGS 85 (214)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC---------------CEEEEEEEEECCS
T ss_pred CCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEEC-------------CEEEEEEEEECCCC
Confidence 355667789999999999999999999999999988899998877 3455544 57889999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc------
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTS-LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK------ 166 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~-l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~------ 166 (333)
++|..++..+++.+|++|+|||++++.+|+. +..|+..+.... .++|++|||||+|+..+
T Consensus 86 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~~~~~~~ 152 (214)
T 3q3j_B 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-------------PSTRVLLIGCKTDLRTDLSTLME 152 (214)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-------------TTSEEEEEEECGGGGGCHHHHHH
T ss_pred HhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEChhhccchhhhhh
Confidence 9999999999999999999999999999999 699999998874 37999999999999752
Q ss_pred ----cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC-HHHHHHHHHHHHHHH
Q 019959 167 ----EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFRMLIRR 232 (333)
Q Consensus 167 ----~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~-v~~~~~~l~~~l~~~ 232 (333)
..+.++ .+++.++++.+++. +|+| |||++|.| ++++|+.+++.+...
T Consensus 153 ~~~~~~~~v~----~~~~~~~~~~~~~~------~~~e---------~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 153 LSHQKQAPIS----YEQGCAIAKQLGAE------IYLE---------GSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp HHHTTCCCCC----HHHHHHHHHHHTCS------EEEE---------CCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred hcccccCccC----HHHHHHHHHHcCCC------EEEE---------eccCCCcccHHHHHHHHHHHHhcc
Confidence 124565 48899999999852 6778 99999987 888888888876654
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=222.49 Aligned_cols=170 Identities=22% Similarity=0.415 Sum_probs=145.4
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
.....+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~ 83 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID-------------GKQIKLQIWDTAGQESF 83 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEET-------------TEEEEEEEECCTTGGGT
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-------------CEEEEEEEEECCCchhh
Confidence 34667999999999999999999999999888888888998888888876 56789999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..+++.+|++|+|||+++..+++.+..|+..+..... .++|++||+||+|+... +.+.
T Consensus 84 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~------------~~~piilv~nK~Dl~~~--~~v~---- 145 (191)
T 2a5j_A 84 RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS------------SNMVIMLIGNKSDLESR--RDVK---- 145 (191)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECcccCCc--cccC----
Confidence 99989999999999999999999999999999999987642 47899999999999764 4555
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
.++++++++.++ ++|+| |||++|.|++++|+.+.+.+.++.
T Consensus 146 ~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 146 REEGEAFAREHG-------LIFME---------TSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHHT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 377888998887 46788 999999999999999999888754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=220.96 Aligned_cols=169 Identities=16% Similarity=0.209 Sum_probs=141.3
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
...+....+||+|+|++|||||||+++|+++.+...+.+|. .++ .+.+.++ +..+.+.||||+|+
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~-------------~~~~~l~i~Dt~G~ 77 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVD-------------GQSYLLLIRDEGGP 77 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEET-------------TEEEEEEEEECSSS
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEEC-------------CEEEEEEEEECCCC
Confidence 34556788999999999999999999999999988787773 344 4666665 67889999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+++. +++.+|++|+|||++++.+|+.+..|+.++..... ..++|++|||||+|+.....+.+..
T Consensus 78 ~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~~~~~v~~ 141 (184)
T 3ihw_A 78 PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-----------ASEVPMVLVGTQDAISAANPRVIDD 141 (184)
T ss_dssp CCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-----------GGGSCEEEEEECTTCBTTBCCCSCH
T ss_pred hhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccccccccCH
Confidence 9886 67889999999999999999999999999987632 1368999999999997554466764
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++++.++. ++|+| |||++|.|++++|+.+.+.+.+.
T Consensus 142 ----~~~~~~~~~~~~------~~~~e---------~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 142 ----SRARKLSTDLKR------CTYYE---------TCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp ----HHHHHHHHHTTT------CEEEE---------EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCC------CeEEE---------ecCCCCCCHHHHHHHHHHHHHHH
Confidence 889999999873 46778 99999999999999999988765
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=217.51 Aligned_cols=165 Identities=24% Similarity=0.415 Sum_probs=138.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.+|||+|++++..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~ 70 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIG-------------GKRVNLAIWDTAGQERFHA 70 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESS-------------SCEEEEEEEECCCC-----
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEEC-------------CEEEEEEEEECCCcHhhhh
Confidence 467899999999999999999999999988888999999888888775 5788999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
+...+++.+|++|+|||+++..+++.+..|+..+..... .++|+++|+||+|+.+. +.+. .+
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~~ 132 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG------------NEICLCIVGNKIDLEKE--RHVS----IQ 132 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG------------GGSEEEEEEECGGGGGG--CCSC----HH
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCeEEEEEECcccccc--cccC----HH
Confidence 999999999999999999999999999999999877532 36899999999999765 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+++++++.++ +++++ +||++|.|++++++.+.+.+.
T Consensus 133 ~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 133 EAESYAESVG-------AKHYH---------TSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHTT-------CEEEE---------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CeEEE---------ecCCCCCCHHHHHHHHHHHHh
Confidence 7888998887 46777 999999999999999988764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=218.60 Aligned_cols=169 Identities=18% Similarity=0.301 Sum_probs=146.2
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
......+||+|+|++|||||||+++|++..+...+.++++..+ ...+.++ +..+.+.||||+|+++
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEID-------------NQWAILDVLDTAGQEE 78 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCSCGG
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeC-------------CcEEEEEEEECCCchh
Confidence 3456789999999999999999999999999888889988777 5666665 6778899999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+..++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+.+. +.+..
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~Dl~~~--~~v~~-- 143 (183)
T 3kkq_A 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-----------RESFPMILVANKVDLMHL--RKVTR-- 143 (183)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-----------SSCCCEEEEEECTTCSTT--CCSCH--
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEECCCchhc--cCcCH--
Confidence 999999999999999999999999999999999999876422 137899999999999865 56663
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeec-cCcCHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK-EARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk-~g~~v~~~~~~l~~~l~~ 231 (333)
++++++++.++ ++|+| |||+ +|.|++++|+.+.+.+.+
T Consensus 144 --~~~~~~~~~~~-------~~~~~---------~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 144 --DQGKEMATKYN-------IPYIE---------TSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp --HHHHHHHHHHT-------CCEEE---------EBCSSSCBSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhC-------CeEEE---------eccCCCCCCHHHHHHHHHHHHhh
Confidence 78899999988 46888 9999 999999999999987764
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=217.33 Aligned_cols=167 Identities=25% Similarity=0.467 Sum_probs=146.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.++.+.++..+.+.++ +..+.+.||||+|++++.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~ 78 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-------------GQKIKLQIWDTAGQERFR 78 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEET-------------TEEEEEEEEECTTGGGTC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-------------CeEEEEEEEECCCChHhh
Confidence 4567999999999999999999999999988888999998888888775 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||+++..+++.+..|+..+..... .++|+++|+||+|+.+. +.+. .
T Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~ 140 (179)
T 1z0f_A 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN------------PNTVIILIGNKADLEAQ--RDVT----Y 140 (179)
T ss_dssp HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----H
T ss_pred hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECcccccc--cccC----H
Confidence 9999999999999999999999999999999999988742 37899999999999754 4555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++++++.++ +++++ +||++|.|++++++.+.+.+.+
T Consensus 141 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 141 EEAKQFAEENG-------LLFLE---------ASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHhh
Confidence 77889998877 46888 9999999999999998877643
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=220.33 Aligned_cols=169 Identities=24% Similarity=0.405 Sum_probs=149.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|++..+...+.++++.++..+.+.++ +..+.+.||||+|++++..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 72 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRN-------------DKRIKLQIWDTAGLERYRT 72 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGHH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEEC-------------CeEEEEEEEECCCchhhcc
Confidence 456899999999999999999999999988888899998888888775 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .+
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~~ 134 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW------------DNAQVLLVGNKCDMEDE--RVVS----SE 134 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------SSCEEEEEEECTTCTTS--CCSC----HH
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECcccCcc--cccC----HH
Confidence 999999999999999999999999999999999987642 36899999999999765 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+++++++.++ +++++ |||++|.|++++|+.+++.+.++..
T Consensus 135 ~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~~~ 174 (203)
T 1zbd_A 135 RGRQLADHLG-------FEFFE---------ASAKDNINVKQTFERLVDVICEKMS 174 (203)
T ss_dssp HHHHHHHHHT-------CEEEE---------CBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 7889999887 46777 9999999999999999998887654
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=217.41 Aligned_cols=169 Identities=25% Similarity=0.418 Sum_probs=147.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.++.+.++....+.++ +..+.+.||||+|++++.
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 72 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-------------GEKVKLQIWDTAGQERFR 72 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEET-------------TEEEEEEEEEETTGGGCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEEC-------------CEEEEEEEEcCCCchhhh
Confidence 4567999999999999999999999999888889999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..++..+|++|+|||++++.+++.+..|+..+.... .++|++||+||+|+... +.+. .
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~ilv~nK~Dl~~~--~~~~----~ 133 (181)
T 3tw8_B 73 TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-------------DDVCRILVGNKNDDPER--KVVE----T 133 (181)
T ss_dssp SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-------------TTSEEEEEEECTTCGGG--CCSC----H
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECCCCchh--cccC----H
Confidence 999999999999999999999999999999999998875 37899999999999865 4455 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+++..++...+ +++++ +||++|.|++++++.+.+.+.+...
T Consensus 134 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 134 EDAYKFAGQMG-------IQLFE---------TSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp HHHHHHHHHHT-------CCEEE---------CBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHHHhh
Confidence 77888998888 46778 9999999999999999998877643
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=215.59 Aligned_cols=164 Identities=26% Similarity=0.436 Sum_probs=143.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.+|||+|++++..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~G~~~~~~ 70 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-------------DTTVKFEIWDTAGQERYHS 70 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-------------CEEEEEEEEeCCCcHHhhh
Confidence 457899999999999999999999999888888899998888888775 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+... +.+. .+
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iilv~nK~Dl~~~--~~~~----~~ 132 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS------------PNIVIALSGNKADLANK--RAVD----FQ 132 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CCSC----HH
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECccCccc--cccC----HH
Confidence 999999999999999999999999999999999987642 47899999999999764 4455 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++++++..+ ++|++ +||++|.|++++++.+.+.+
T Consensus 133 ~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 133 EAQSYADDNS-------LLFME---------TSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHH
Confidence 7888888876 46888 99999999999888887643
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=219.10 Aligned_cols=169 Identities=25% Similarity=0.463 Sum_probs=150.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.++++.++....+.++ +..+.+.||||+|++++.
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 79 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-------------GKTIKLQIWDTAGQERFR 79 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGC
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-------------CEEEEEEEEECCCcHhhh
Confidence 3567899999999999999999999999988899999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ilv~nK~Dl~~~--~~~~----~ 141 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS------------ENVNKLLVGNKCDLTTK--KVVD----Y 141 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCTTT--CCSC----H
T ss_pred hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECcccccc--cccC----H
Confidence 9999999999999999999999999999999999988753 47899999999999865 4555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++++++.++ ++|+| |||++|.|++++|+.+.+.+.++.
T Consensus 142 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 142 TTAKEFADSLG-------IPFLE---------TSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHHTT-------CCEEE---------ECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcC-------CcEEE---------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 77889999888 46888 999999999999999999887653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=217.40 Aligned_cols=170 Identities=23% Similarity=0.416 Sum_probs=149.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.++++.++....+.++ +..+.+.||||+|++++.
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~ 73 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG-------------GKYVKLQIWDTAGQERFR 73 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEET-------------TEEEEEEEEEECCSGGGH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-------------CEEEEEEEEeCCCcHHHH
Confidence 3567999999999999999999999999988888999988888888776 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..++..+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~ 135 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS------------QNIVIILCGNKKDLDAD--REVT----F 135 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CCSC----H
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECcccccc--cccC----H
Confidence 9999999999999999999999999999999999887642 37899999999999754 4555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++++++..+ ++|++ |||++|.|++++|+.+.+.+.++..
T Consensus 136 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 136 LEASRFAQENE-------LMFLE---------TSALTGENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp HHHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CEEEE---------ecCCCCCCHHHHHHHHHHHHHHHhh
Confidence 77888888877 46888 9999999999999999998887643
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=218.88 Aligned_cols=168 Identities=23% Similarity=0.413 Sum_probs=147.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.+. +..+.+.||||+|++++.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~ 85 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRH-------------DKRIKLQIWDTAGQERYR 85 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEET-------------TEEEEEEEEECCSCCSSC
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEEC-------------CeEEEEEEEeCCCcHHHh
Confidence 4567999999999999999999999999888888898988888877765 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..++..+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~ 147 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW------------DNAQVILVGNKCDLEDE--RVVP----A 147 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----H
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECcccccc--cCCC----H
Confidence 9999999999999999999999999999999999988742 36899999999999765 4555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++++.++ +++++ +||++|.|++++++.+.+.+.++
T Consensus 148 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 148 EDGRRLADDLG-------FEFFE---------ASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHHH
Confidence 77889999887 46778 99999999999999999988764
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=220.82 Aligned_cols=169 Identities=22% Similarity=0.347 Sum_probs=145.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++.. .+.++ +..+.+.||||+|+++|.
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~-------------~~~~~~~i~Dt~G~~~~~ 85 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYK-------------NEEFILHLWDTAGQEEYD 85 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEET-------------TEEEEEEEEEECCSGGGT
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEEC-------------CEEEEEEEEECCCcHHHH
Confidence 4567999999999999999999999999988888998887754 45554 578889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
.++..+++.+|++|+|||++++.+|+.+ ..|+..+.... .++|++|||||+|+.....+.+..
T Consensus 86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ilv~nK~Dl~~~~~~~~~~--- 149 (194)
T 3reg_A 86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-------------DTAKTVLVGLKVDLRKDGSDDVTK--- 149 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTSEEEEEEECGGGCCTTTTCCCH---
T ss_pred HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEChhhccCCCCcccH---
Confidence 9999999999999999999999999997 78999988774 379999999999998755466663
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++.++++.+++. +|+| |||++|.|++++|+.+.+.+.++
T Consensus 150 -~~~~~~~~~~~~~------~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 150 -QEGDDLCQKLGCV------AYIE---------ASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp -HHHHHHHHHHTCS------CEEE---------CBTTTTBSHHHHHHHHHHHHHCS
T ss_pred -HHHHHHHHhcCCC------EEEE---------eecCCCCCHHHHHHHHHHHHHhc
Confidence 8899999999853 2777 99999999999999998877643
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=219.45 Aligned_cols=168 Identities=20% Similarity=0.281 Sum_probs=143.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|.+.++ ...+.++ +..+.+.||||+|++++.
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G~~~~~ 68 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVN-------------GQEYHLQLVDTAGQDEYS 68 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCCCCTTC
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEEC-------------CEEEEEEEEeCCCchhhh
Confidence 34678999999999999999999999989888889988877 6666665 577899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...+++.+|++|+|||++++.+|+.+..|+.++..... ..++|++||+||+|+... +.+..
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~Dl~~~--~~~~~---- 131 (181)
T 3t5g_A 69 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-----------KVQIPIMLVGNKKDLHME--RVISY---- 131 (181)
T ss_dssp CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---------------CCEEEEEECTTCTTT--CCSCH----
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECccchhc--ceecH----
Confidence 8888999999999999999999999999999999877642 237899999999999765 56663
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++.+++.++ ++|+| +||++|.|++++|+.+++.+.+.
T Consensus 132 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 132 EEGKALAESWN-------AAFLE---------SSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHTT-------CEEEE---------CCTTSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-------CcEEE---------EecCCCCCHHHHHHHHHHHHHHh
Confidence 88999999987 46888 99999988888888888776553
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=222.32 Aligned_cols=172 Identities=23% Similarity=0.447 Sum_probs=140.8
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
..+....+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-------------GKKIRLQIWDTAGQE 86 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEET-------------TEEEEEEEEEECCSG
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEEC-------------CeEEEEEEEeCCCcH
Confidence 4455678999999999999999999999999888888999999988888876 567899999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
++..++..+++.+|++|+|||+++..+|+.+..|+..+..... .++|++||+||+|+... +.+..
T Consensus 87 ~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~------------~~~piilV~NK~Dl~~~--~~v~~- 151 (192)
T 2il1_A 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS------------EDAELLLVGNKLDCETD--REITR- 151 (192)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CCSCH-
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECcccccc--cccCH-
Confidence 9999999999999999999999999999999999999887642 36899999999999765 45553
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++++.+. .++|++ |||++|.|++++++.+.+.+.++
T Consensus 152 ---~~~~~~~~~~~------~~~~~~---------~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 152 ---QQGEKFAQQIT------GMRFCE---------ASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp ---HHHHHHHHTST------TCEEEE---------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHhcC------CCeEEE---------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 67888887643 256777 99999999999999999887653
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=224.16 Aligned_cols=171 Identities=18% Similarity=0.230 Sum_probs=138.7
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
+.+....+||+|||++|||||||+++|++..+...+.++.+.++..+.+.++ +..+.+.+|||+|++
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVD-------------KEEVTLVVYDIWEQG 83 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEET-------------TEEEEEEEECCCCCS
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEEC-------------CEEEEEEEEecCCCc
Confidence 4445677999999999999999999998654433445556677777777775 678899999999998
Q ss_pred hhhh-hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 95 RYKD-CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 95 ~~~~-~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
++.. ++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|++|||||+|+... +.++
T Consensus 84 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~v~- 149 (195)
T 3cbq_A 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-----------HHDLPVILVGNKSDLARS--REVS- 149 (195)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-----------TSCCCEEEEEECTTCTTT--CCSC-
T ss_pred cchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEeechhcccc--CCcC-
Confidence 8765 777889999999999999999999999999999887632 136899999999999865 5565
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.++++++++.++ ++|+| |||++|.|++++|+.+++.+..
T Consensus 150 ---~~~~~~~a~~~~-------~~~~e---------~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 150 ---LEEGRHLAGTLS-------CKHIE---------TSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp ---HHHHHHHHHHTT-------CEEEE---------EBTTTTBSHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHhC-------CEEEE---------EcCCCCCCHHHHHHHHHHHHHH
Confidence 377888998887 46788 9999999999999999887754
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=224.91 Aligned_cols=169 Identities=24% Similarity=0.390 Sum_probs=150.1
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
.....+||+|+|++|||||||+++|+++.+...+.++.+.++..+.+.++ +..+.+.||||+|++++
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~ 85 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-------------EKRVKLQIWDTAGQERY 85 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-------------TTTEEEEEECHHHHHHC
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-------------CEEEEEEEEeCCChHHH
Confidence 34677999999999999999999999999988888999999988888776 56789999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+.
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~---- 147 (191)
T 3dz8_A 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW------------DNAQVILVGNKCDMEEE--RVVP---- 147 (191)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----
T ss_pred HHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECCCCccc--cccC----
Confidence 99999999999999999999999999999999999988642 47899999999999765 4555
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++++.+++.++ ++|+| |||++|.|++++|+.+++.+.++
T Consensus 148 ~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 148 TEKGQLLAEQLG-------FDFFE---------ASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHHh
Confidence 377889999888 46888 99999999999999999988765
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=216.01 Aligned_cols=168 Identities=26% Similarity=0.441 Sum_probs=145.0
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
+.+...+||+|+|++|||||||+++|++..+...+.++++.++....+.++ +..+.+.||||+|+++
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN-------------DATVKFEIWDTAGQER 73 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET-------------TEEEEEEEEECCCSGG
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC-------------CEEEEEEEEeCCCChh
Confidence 345667999999999999999999999999988888899999888888776 5678999999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+..++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+... +.+.
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~i~v~nK~Dl~~~--~~~~--- 136 (181)
T 2efe_B 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN------------PNMVMALAGNKSDLLDA--RKVT--- 136 (181)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECTTCTTT--CCSC---
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECCccccc--ccCC---
Confidence 999999999999999999999999999999999999988742 47899999999999765 4555
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.++++++++.++ ++|++ +||++|.|++++++.+.+.+.
T Consensus 137 -~~~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 137 -AEDAQTYAQENG-------LFFME---------TSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp -HHHHHHHHHHTT-------CEEEE---------CCSSSCTTHHHHHHHHHHTCC
T ss_pred -HHHHHHHHHHcC-------CEEEE---------EECCCCCCHHHHHHHHHHHHH
Confidence 377888988877 46788 999999999998888876543
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=218.73 Aligned_cols=169 Identities=24% Similarity=0.445 Sum_probs=148.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.++++.++..+.+.++ +..+.+.||||+|++++.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 88 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-------------TAAVKAQIWDTAGLERYR 88 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-------------TEEEEEEEEEESCCCTTC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEeCCCchhhh
Confidence 4667999999999999999999999999988888999999888888775 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .
T Consensus 89 ~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~ 150 (193)
T 2oil_A 89 AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE------------ATIVVMLVGNKSDLSQA--REVP----T 150 (193)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC------------TTCEEEEEEECGGGGGG--CCSC----H
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCeEEEEEECCCcccc--cccC----H
Confidence 9999999999999999999999999999999999977642 47899999999999765 4454 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++.+++..+ ++|++ |||++|.|++++++.+.+.+.++.
T Consensus 151 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 151 EEARMFAENNG-------LLFLE---------TSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHTT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 77888888877 46777 999999999999999999887654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=221.08 Aligned_cols=167 Identities=15% Similarity=0.177 Sum_probs=135.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++ ...+.++ +..+.+.||||+|++++.
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~ 83 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVD-------------HQPVHLRVMDTADLDTPR 83 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCC---CC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEEC-------------CEEEEEEEEECCCCCcch
Confidence 45679999999999999999999999999888899988776 3445554 577899999999999988
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+ ..+++.+|++|+|||++++.+|+.+..|+.++...... ...++|++|||||+|+... +.++.
T Consensus 84 ~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---------~~~~~piilv~nK~Dl~~~--~~v~~---- 147 (187)
T 3c5c_A 84 NC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKE---------TQRSIPALLLGNKLDMAQY--RQVTK---- 147 (187)
T ss_dssp CT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHH---------HCCCCCEEEEEECGGGGGG--CSSCH----
T ss_pred hH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhc---------cCCCCCEEEEEECcchhhc--CccCH----
Confidence 76 56899999999999999999999999999998775210 0026899999999999765 55663
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeee-ccCcCHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAA-KEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SA-k~g~~v~~~~~~l~~~l~ 230 (333)
+++.++++.++ ++|+| ||| ++|.|++++|+.+++.+.
T Consensus 148 ~~~~~~~~~~~-------~~~~e---------~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 148 AEGVALAGRFG-------CLFFE---------VSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHT-------CEEEE---------CCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CcEEE---------EeecCccccHHHHHHHHHHHHh
Confidence 78899999988 46888 999 899888888888887664
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=215.06 Aligned_cols=168 Identities=15% Similarity=0.168 Sum_probs=136.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+.. +.+|++..+ .+.+.++ +..+.+.||||+|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~--- 66 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVD-------------GQTHLVLIREEAGAPD--- 66 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEET-------------TEEEEEEEEECSSSCC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEEC-------------CEEEEEEEEECCCCch---
Confidence 457999999999999999999999998876 777877554 5666665 5778999999999987
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
..+++++|++|+|||++++.+|+.+..|+..+....... ..++|++|||||+|+.....+.+.. +
T Consensus 67 --~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~---------~~~~piilv~nK~Dl~~~~~~~v~~----~ 131 (178)
T 2iwr_A 67 --AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEG---------RGGLALALVGTQDRISASSPRVVGD----A 131 (178)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS---------SCCCEEEEEEECTTCBTTBCCCSCH----H
T ss_pred --hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcC---------CCCCCEEEEEECccccccccCcCCH----H
Confidence 357888999999999999999999999876665542211 1378999999999996444466663 7
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+++++++.++. ++|+| |||++|.|++++|+.+.+.+.+...
T Consensus 132 ~~~~~~~~~~~------~~~~~---------~Sa~~~~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 132 RARALXADMKR------CSYYE---------TXATYGLNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp HHHHHHHHHSS------EEEEE---------EBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC------CeEEE---------EeccccCCHHHHHHHHHHHHHHHHh
Confidence 88889887742 56888 9999999999999999998877543
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=220.18 Aligned_cols=168 Identities=24% Similarity=0.441 Sum_probs=148.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|++..+...+.++++.++..+.+.++ +..+.+.||||+|++++..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 72 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD-------------GKTVKLQIWDTAGQERFRT 72 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEET-------------TEEEEEEEECCTTTTTTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-------------CEEEEEEEEeCCChHHHHH
Confidence 457899999999999999999999999988889999999988888876 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .+
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~~ 134 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT------------STVLKLLVGNKCDLKDK--RVVE----YD 134 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECTTCTTT--CCSC----HH
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECCCCccc--cccC----HH
Confidence 999999999999999999999999999999999987642 36899999999999865 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+++++++..+ ++|++ +||++|.|++++|+.+.+.+.+..
T Consensus 135 ~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 135 VAKEFADANK-------MPFLE---------TSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp HHHHHHHHTT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 7888988877 46778 999999999999999999887653
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=212.03 Aligned_cols=164 Identities=24% Similarity=0.402 Sum_probs=143.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+. +..+.+.+|||+|++++..
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dt~G~~~~~~ 70 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-------------NELHKFLIWDTAGLERFRA 70 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-------------CeEEEEEEEcCCCchhhhc
Confidence 356899999999999999999999999888888999998888888776 5678899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
+...++..+|++|+|||++++.+++.+..|+..+..... ..+|+++|+||+|+.+. +.+. .+
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~~iilv~nK~Dl~~~--~~v~----~~ 132 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP------------PSIVVAIAGNKCDLTDV--REVM----ER 132 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTSEEEEEEECTTCGGG--CCSC----HH
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEECCccccc--cccC----HH
Confidence 999999999999999999999999999999999988643 47899999999999865 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++.+++.++ +++++ +||++|.|++++++.+.+.+
T Consensus 133 ~~~~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 133 DAKDYADSIH-------AIFVE---------TSAKNAININELFIEISRRI 167 (170)
T ss_dssp HHHHHHHHTT-------CEEEE---------CBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-------CEEEE---------EeCCCCcCHHHHHHHHHHHH
Confidence 7888888876 46788 99999999999998887654
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-30 Score=214.24 Aligned_cols=164 Identities=20% Similarity=0.330 Sum_probs=144.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.||||+|++++..
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 69 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVN-------------DEDVRLMLWDTAGQEEFDA 69 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEET-------------TEEEEEEEECCTTGGGTTC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEEC-------------CEEEEEEEEcCCCcHhHHH
Confidence 356899999999999999999999999988889999999988888876 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
+...++..+|++|+|||++++.+++.+..|+..+.... .++|+++|+||+|+... +.+. .+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~--~~~~----~~ 130 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-------------GDIPTALVQNKIDLLDD--SCIK----NE 130 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-------------CSCCEEEEEECGGGGGG--CSSC----HH
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECcccCcc--cccC----HH
Confidence 99999999999999999999999999999999987764 26899999999999865 4454 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+++++++.++ +++++ +||++|.|++++++.+.+.+.
T Consensus 131 ~~~~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 131 EAEGLAKRLK-------LRFYR---------TSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp HHHHHHHHHT-------CEEEE---------CBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CeEEE---------EecCCCCCHHHHHHHHHHHHh
Confidence 7888988887 46777 999999999999999988765
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-30 Score=214.19 Aligned_cols=166 Identities=17% Similarity=0.213 Sum_probs=128.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh-h
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD-C 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~-~ 99 (333)
.+||+|+|++|||||||+++|++..+......+.+.+...+.+.++ +..+.+.+|||+|++++.. +
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~ 68 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVD-------------KEEVTLIVYDIWEQGDAGGWL 68 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEET-------------TEEEEEEEECCCCC-------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEEC-------------CeEEEEEEEECCCccccchhh
Confidence 5899999999999999999999877766666666777777877776 6788999999999998876 6
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++++|+.+..|+.++..... ..++|+++|+||+|+.+. +.+. .++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~Dl~~~--~~~~----~~~ 131 (169)
T 3q85_A 69 QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-----------HHDLPVILVGNKSDLARS--REVS----LEE 131 (169)
T ss_dssp -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-----------TSCCCEEEEEECTTCGGG--CCSC----HHH
T ss_pred hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-----------CCCCCEEEEeeCcchhhc--ccCC----HHH
Confidence 67778899999999999999999999999999988742 137899999999999865 5566 378
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++.++ ++|+| |||++|.|++++|+.+++.+..+
T Consensus 132 ~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 132 GRHLAGTLS-------CKHIE---------TSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHTT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC-------CcEEE---------ecCccCCCHHHHHHHHHHHHHhc
Confidence 889999887 46788 99999999999999999887653
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=214.49 Aligned_cols=180 Identities=22% Similarity=0.383 Sum_probs=148.8
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEE-EEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVG-VKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
.....+||+|+|++|||||||+++|+++.+...+.+|++.++. .+.+.+++... .....+..+.+.||||+|+++
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD----GAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCC----CSSCCCEEEEEEEEEECCSGG
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcc----cccccCcEEEEEEEeCCCcHH
Confidence 3566799999999999999999999999988888899998887 66666542100 000112378999999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+..+...+++.+|++|+|||++++.+++.+..|+..+..... ..++|++||+||+|+... +.+.
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~--- 146 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-----------SENPDIVLCGNKSDLEDQ--RAVK--- 146 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-----------SSSCCEEEEEECTTCGGG--CCSC---
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--cccC---
Confidence 999999999999999999999999999999999999987642 137899999999999765 4455
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
.++++++++.++ +++++ |||++|.|++++++.+.+.+.++.
T Consensus 147 -~~~~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 147 -EEEARELAEKYG-------IPYFE---------TSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp -HHHHHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcC-------CCEEE---------EECCCCCCHHHHHHHHHHHHHHHh
Confidence 377888998887 46777 999999999999999999887754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=217.69 Aligned_cols=170 Identities=26% Similarity=0.461 Sum_probs=142.4
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
..+....+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID-------------GERIKIQLWDTAGQE 80 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET-------------TEEEEEEEEECCCSH
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEEC-------------CEEEEEEEEECCCch
Confidence 3345567999999999999999999999999988888999999988888876 567899999999999
Q ss_pred hhh-hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 95 RYK-DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 95 ~~~-~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
++. .++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|++||+||+|+... +.+.
T Consensus 81 ~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~v~- 146 (189)
T 1z06_A 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-----------ANDIPRILVGNKCDLRSA--IQVP- 146 (189)
T ss_dssp HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-----------CSCCCEEEEEECTTCGGG--CCSC-
T ss_pred hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--ceeC-
Confidence 998 8888899999999999999999999999999999988742 137899999999999765 4555
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccC---cCHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEA---RYDKEAVMKFFRMLI 230 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g---~~v~~~~~~l~~~l~ 230 (333)
.++++++++.++ ++|++ +||++| .|++++|+.+.+.+.
T Consensus 147 ---~~~~~~~~~~~~-------~~~~~---------~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 147 ---TDLAQKFADTHS-------MPLFE---------TSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp ---HHHHHHHHHHTT-------CCEEE---------CCSSSGGGGSCHHHHHHHHC----
T ss_pred ---HHHHHHHHHHcC-------CEEEE---------EeCCcCCcccCHHHHHHHHHHHHh
Confidence 377888998887 46788 999999 999999998877653
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=213.14 Aligned_cols=165 Identities=24% Similarity=0.479 Sum_probs=138.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|++..+...+.++++.++....+.++ +..+.+.||||+|++++..+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~G~~~~~~~ 68 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-------------GKKVKLQIWDTAGQERFRTI 68 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESS-------------SCEEEEEEECCTTGGGTSCC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEeCCCChhhhhh
Confidence 45899999999999999999999999988888999988888888775 56789999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.. +.+. .++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~---~~~~----~~~ 129 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN------------DEAQLLLVGNKSDMET---RVVT----ADQ 129 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCTT---CCSC----HHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECccCCc---CccC----HHH
Confidence 88999999999999999999999999999999988742 3689999999999943 3444 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++.++ +++++ +||++|.|++++++.+.+.+.++
T Consensus 130 ~~~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 130 GEALAKELG-------IPFIE---------SSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHT-------CCEEE---------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHHHHH
Confidence 888998887 46777 99999999999999999887653
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=217.87 Aligned_cols=170 Identities=20% Similarity=0.284 Sum_probs=143.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.+++ +..+.+.||||+|++++.
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------------~~~~~~~~~Dt~G~~~~~ 70 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPG------------NLNVTLQIWDIGGQTIGG 70 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETT------------TEEEEEEEEECTTCCTTC
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCC------------CCEEEEEEEECCCCcccc
Confidence 34679999999999999999999999988777788999888888888752 356899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+...... ..+.| ++||+||+|+.+. +.+.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----------~~~~~~iilv~nK~Dl~~~--~~~~---- 134 (178)
T 2hxs_A 71 KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEE----------SETQPLVALVGNKIDLEHM--RTIK---- 134 (178)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHH----------HTCCCEEEEEEECGGGGGG--CSSC----
T ss_pred chhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcc----------cCCCCeEEEEEEccccccc--cccC----
Confidence 99999999999999999999999999999999998774210 01345 8999999999765 4555
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.++++++++.++ +++++ |||++|.|++++++.+.+.+.+
T Consensus 135 ~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 135 PEKHLRFCQENG-------FSSHF---------VSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHHHT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC-------CcEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 377888998887 46788 9999999999999998877654
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=211.76 Aligned_cols=165 Identities=21% Similarity=0.402 Sum_probs=142.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|+++.+...+.++++.++....+.++ +..+.+.+|||+|++++..+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~G~~~~~~~ 68 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTIN-------------EHTVKFEIWDTAGQERFASL 68 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEECCCChhhhhh
Confidence 46899999999999999999999999888888999999888888776 56789999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC-CccCcccHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG-TRGSSGNLVD 178 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~-r~v~~~~~~~ 178 (333)
+..+++.+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+..... +.+. .+
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~~~~~~v~----~~ 132 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS------------KDIIIALVGNKIDXLQEGGERKVA----RE 132 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGSSCCCCSC----HH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECCCccccccccCCC----HH
Confidence 99999999999999999999999999999999987742 3789999999999975432 3444 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++++++..+ ++|++ +||++|.|++++++.+.+.+
T Consensus 133 ~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 133 EGEKLAEEKG-------LLFFE---------TSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHHT-------CEEEE---------CCTTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHH
Confidence 7888888887 46778 99999999999888887543
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=213.09 Aligned_cols=168 Identities=25% Similarity=0.416 Sum_probs=137.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
....+||+|+|++|||||||+++|++..+. ..+.+|++.++....+.++ +..+.+.+|||+|++++
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~Dt~G~~~~ 73 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVD-------------GVKVKLQMWDTAGQERF 73 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEET-------------TEEEEEEEEECCCC---
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEEC-------------CEEEEEEEEeCCCcHHH
Confidence 456789999999999999999999998885 4677888988888777765 56789999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..++..+|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+... +.+.
T Consensus 74 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~---- 135 (180)
T 2g6b_A 74 RSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ------------HDVALMLLGNKVDSAHE--RVVK---- 135 (180)
T ss_dssp -----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECCSTTSC--CCSC----
T ss_pred HHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEECcccCcc--cccC----
Confidence 99999999999999999999999999999999999988642 37899999999999865 4555
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++++.+++.++ +++++ +||++|.|++++++.+.+.+.++
T Consensus 136 ~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 136 REDGEKLAKEYG-------LPFME---------TSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 377888888887 46777 99999999999999998877543
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=217.49 Aligned_cols=168 Identities=22% Similarity=0.311 Sum_probs=140.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++. +.+.++ +..+.+.||||+|+++|.
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 69 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEID-------------TQRIELSLWDTSGSPYYD 69 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECS-------------SCEEEEEEEEECCSGGGT
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEEC-------------CEEEEEEEEECCCChhhh
Confidence 456799999999999999999999999998888888887763 445554 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----------
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK---------- 166 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~---------- 166 (333)
.++..++..+|++|+|||++++.+|+.+ ..|+..+.... .++|++|||||+|+..+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~ 136 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-------------PNTKMLLVGCKSDLRTDVSTLVELSNH 136 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTCEEEEEEECGGGGGCHHHHHHHHTT
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-------------CCCCEEEEEEcchhhcchhhHhhhhhc
Confidence 9999999999999999999999999998 78999998764 27899999999999742
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeec-cCcCHHHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK-EARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk-~g~~v~~~~~~l~~~l~~ 231 (333)
..+.++ .++++++++.++. ++|+| |||+ +|.|++++|+.+.+.+++
T Consensus 137 ~~~~v~----~~~~~~~~~~~~~------~~~~e---------~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 137 RQTPVS----YDQGANMAKQIGA------ATYIE---------CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TCCCCC----HHHHHHHHHHHTC------SEEEE---------CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred ccCCCC----HHHHHHHHHHcCC------cEEEE---------eeecCCCcCHHHHHHHHHHHHhc
Confidence 124555 3788999998874 46778 9999 688888888888877653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=211.24 Aligned_cols=167 Identities=23% Similarity=0.240 Sum_probs=131.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--hh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER--YK 97 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~--~~ 97 (333)
..+||+|+|++|||||||+++|++..+...+ ++.+.++..+.+.++ +..+.+.+|||+|++. +.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~~~ 68 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVD-------------GEDTTLVVVDTWEAEKLDKS 68 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEET-------------TEEEEEEEECCC-------C
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEEC-------------CEEEEEEEEecCCCCccchh
Confidence 4689999999999999999999988775443 356777777777775 5678899999999988 66
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+. +.+..
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-----------~~~~piilv~NK~Dl~~~--~~v~~---- 131 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-----------ADHVPIILVGNKADLARC--REVSV---- 131 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC---------------CCEEEEEECTTCTTT--CCSCH----
T ss_pred hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-----------cCCCCEEEEEEChhhccc--cccCH----
Confidence 7777889999999999999999999999999999887532 136899999999999865 55653
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++.++..++ ++|+| |||++|.|++++++.+.+.+..+.
T Consensus 132 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 132 EEGRACAVVFD-------CKFIE---------TSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHT-------SEEEE---------CBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CeEEE---------EecCCCCCHHHHHHHHHHHHHHhh
Confidence 77888888877 46888 999999999999999998886543
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=221.39 Aligned_cols=169 Identities=23% Similarity=0.434 Sum_probs=137.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++++..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~l~Dt~G~~~~~~ 89 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVG-------------GKTVKLQIWDTAGQERFRS 89 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEET-------------TEEEEEEEECCTTHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEEC-------------CeeeEEEEEcCCCcHhHHH
Confidence 567999999999999999999999999888888999988888888776 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+. .+
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~--~~v~----~~ 151 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS------------PNIVVILCGNKKDLDPE--REVT----FL 151 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC------------TTCEEEEEEECGGGGGG--CCSC----HH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECCCcccc--cccC----HH
Confidence 988999999999999999999999999999999887642 37899999999999754 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++.++++..+ ++|++ |||++|.|++++|+.+.+.+.++..
T Consensus 152 ~~~~~~~~~~-------~~~~~---------~SA~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 152 EASRFAQENE-------LMFLE---------TSALTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp HHHHHHHHTT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 7888888877 46888 9999999999999999998887643
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-30 Score=221.51 Aligned_cols=171 Identities=22% Similarity=0.378 Sum_probs=133.8
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
+......+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD-------------GERTVLQLWDTAGQE 88 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEET-------------TEEEEEEEEECTTCT
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEEC-------------CEEEEEEEEECCCCc
Confidence 3445667999999999999999999999999888888899988888888776 567889999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----cCCc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK----EGTR 170 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~----~~r~ 170 (333)
++..++..+++.+|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+... ..+.
T Consensus 89 ~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~NK~Dl~~~~~~~~~~~ 156 (199)
T 2p5s_A 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH------------ETVPIMLVGNKADIRDTAATEGQKC 156 (199)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---------------CCEEEEEECGGGHHHHHHTTCCC
T ss_pred chhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECcccccccccccccc
Confidence 9999999999999999999999999999999999999887642 36899999999999632 1245
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+. .++++.+++..+ ++|+| |||++|.|++++|+.+.+.+.
T Consensus 157 v~----~~~~~~~~~~~~-------~~~~~---------~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 157 VP----GHFGEKLAMTYG-------ALFCE---------TSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CC----HHHHHHHHHHHT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHT
T ss_pred cC----HHHHHHHHHHcC-------CeEEE---------eeCCCCCCHHHHHHHHHHHHH
Confidence 55 377888998887 46888 999999999999998887664
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=216.42 Aligned_cols=171 Identities=19% Similarity=0.320 Sum_probs=144.6
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
...+....+||+|+|++|||||||+++|+++.+...+.+|++..+ .+.+.++ +..+.+.||||+|+
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~D~~G~ 76 (194)
T 2atx_A 11 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVG-------------GKQYLLGLYDTAGQ 76 (194)
T ss_dssp SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESS-------------SCEEEEEEECCCCS
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEEC-------------CEEEEEEEEECCCC
Confidence 334456789999999999999999999999998888888887766 4455554 56789999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc-----
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE----- 167 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~----- 167 (333)
+++..++..+++.+|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+....
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~ 143 (194)
T 2atx_A 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-------------PNVPFLLIGTQIDLRDDPKTLAR 143 (194)
T ss_dssp SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------TTCCEEEEEECTTSTTCHHHHHH
T ss_pred cchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEChhhcccccchhh
Confidence 999999999999999999999999999999997 8999998874 278999999999997642
Q ss_pred -----CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 -----GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 -----~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+.+. .+++.++++.+++ .+|+| |||++|.|++++|+.+++.++
T Consensus 144 ~~~~~~~~v~----~~~~~~~~~~~~~------~~~~~---------~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 144 LNDMKEKPIC----VEQGQKLAKEIGA------CCYVE---------CSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HTTTTCCCCC----HHHHHHHHHHHTC------SCEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccCcccC----HHHHHHHHHHcCC------cEEEE---------eeCCCCCCHHHHHHHHHHHHh
Confidence 13455 4788999999885 25777 999999999999999988765
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=213.47 Aligned_cols=169 Identities=22% Similarity=0.303 Sum_probs=144.5
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
++...+||+|+|++|||||||+++|++..+...+.+|++.++. +.+.++ +..+.+.||||+|++++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~~~Dt~G~~~~ 70 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVD-------------GIPARLDILDTAGQEEF 70 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEET-------------TEEEEEEEEECCCTTTT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEEC-------------CEEEEEEEEECCCchhh
Confidence 4567799999999999999999999999998888888887765 556554 56788999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..++..+|++|+|||++++.++..+..|+.++..... ..++|+++|+||+|+... +.+..
T Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~--~~v~~--- 134 (181)
T 2fn4_A 71 GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-----------RDDFPVVLVGNKADLESQ--RQVPR--- 134 (181)
T ss_dssp SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-----------SSCCCEEEEEECGGGGGG--CCSCH---
T ss_pred HHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--cccCH---
Confidence 99999999999999999999999999999999999855421 137899999999999865 45553
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++.++...+ ++|++ +||++|.|++++++.+.+.+.+.
T Consensus 135 -~~~~~~~~~~~-------~~~~~---------~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 135 -SEASAFGASHH-------VAYFE---------ASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp -HHHHHHHHHTT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcC-------CeEEE---------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 77888888876 46788 99999999999999999887654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=217.92 Aligned_cols=164 Identities=26% Similarity=0.427 Sum_probs=144.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++++..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~ 87 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-------------NELHKFLIWDTAGQERFHS 87 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-------------SSEEEEEEEEECCSGGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-------------CEEEEEEEEcCCCchhhHh
Confidence 567999999999999999999999999888888999999888888775 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+. +.+. .+
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piiiv~NK~Dl~~~--~~v~----~~ 149 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP------------ENIVMAIAGNKCDLSDI--REVP----LK 149 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CCSC----HH
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC------------CCCcEEEEEECcccccc--cccC----HH
Confidence 999999999999999999999999999999999988742 36899999999999754 4555 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++++++..+ ++|++ |||++|.|++++++.+.+.+
T Consensus 150 ~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 150 DAKEYAESIG-------AIVVE---------TSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp HHHHHHHTTT-------CEEEE---------CBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHHcC-------CEEEE---------EeCCCCcCHHHHHHHHHHHH
Confidence 7888888776 46788 99999999999988887654
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=211.07 Aligned_cols=171 Identities=25% Similarity=0.456 Sum_probs=141.6
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.++++.++....+.++ +..+.+.||||+|++++.
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 70 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-------------GHFVTMQIWDTAGQERFR 70 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEET-------------TEEEEEEEEECCCCGGGH
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEEC-------------CEEEEEEEEeCCCchhhh
Confidence 4567899999999999999999999999888888999999888888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||+++..+++.+..|+.++...... ....++|+++|+||+|+.. +.+. .
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~p~i~v~nK~Dl~~---~~~~----~ 135 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV--------KEPESFPFVILGNKIDISE---RQVS----T 135 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC--------SCTTTSCEEEEEECTTCSS---CSSC----H
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccc--------cccCCCcEEEEEECCcccc---cccC----H
Confidence 99999999999999999999999999999999998765321 0113789999999999973 4455 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++++++..+ .+++++ |||++|.|++++++.+.+.+++
T Consensus 136 ~~~~~~~~~~~------~~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 136 EEAQAWCRDNG------DYPYFE---------TSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHTT------CCCEEE---------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC------CceEEE---------EeCCCCCCHHHHHHHHHHHHHh
Confidence 77888887544 256888 9999999999999998887754
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=221.22 Aligned_cols=173 Identities=23% Similarity=0.342 Sum_probs=140.1
Q ss_pred cCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 13 LNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 13 ~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
..+.+....+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.++ +..+.+.||||+|
T Consensus 16 ~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G 81 (201)
T 3oes_A 16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLG-------------KDEFHLHLVDTAG 81 (201)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----------------CEEEEEEEECC
T ss_pred CCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEEC-------------CEEEEEEEEECCC
Confidence 3455567789999999999999999999999999888888888776 5555443 5678899999999
Q ss_pred chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 93 HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 93 ~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
++++..++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+... +.+.
T Consensus 82 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~v~ 148 (201)
T 3oes_A 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-----------KTRVPVVLVGNKADLSPE--REVQ 148 (201)
T ss_dssp CCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC----------------CCCEEEEEECTTCGGG--CCSC
T ss_pred ccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECccCccc--cccC
Confidence 999999999999999999999999999999999999999977632 237899999999999865 5565
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
. ++++.+++.++ ++|+| +||++|.|++++|+.+++.+.+.
T Consensus 149 ~----~~~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 149 A----VEGKKLAESWG-------ATFME---------SSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp H----HHHHHHHHHHT-------CEEEE---------CCTTCHHHHHHHHHHHHHHHHHC
T ss_pred H----HHHHHHHHHhC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHhh
Confidence 3 77889999888 46888 99999999999999998887664
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=220.35 Aligned_cols=168 Identities=17% Similarity=0.198 Sum_probs=136.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC--CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS--SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
....+||+|||++|||||||+++|++.. +...+ +++|.++..+.+.++ +..+.+.+|||+|++.
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~-------------~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVD-------------GESATIILLDMWENKG 99 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEET-------------TEEEEEEEECCTTTTH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEEC-------------CeeeEEEEeecCCCcc
Confidence 3556999999999999999999999643 33333 456778877887776 6788899999999887
Q ss_pred -hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 96 -YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 96 -~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
+..+...+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+||||||+||... +.+.
T Consensus 100 ~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-----------~~~~piilVgNK~DL~~~--r~v~-- 164 (211)
T 2g3y_A 100 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-----------TEDIPIILVGNKSDLVRC--REVS-- 164 (211)
T ss_dssp HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-----------GTTSCEEEEEECTTCGGG--CCSC--
T ss_pred hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----------CCCCcEEEEEEChHHhcC--ceEe--
Confidence 566777788999999999999999999999999988876421 136899999999999764 5565
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++++.++..++ ++|+| |||++|.|++++|+.+++.+..+
T Consensus 165 --~~e~~~~a~~~~-------~~~~e---------~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 165 --VSEGRACAVVFD-------CKFIE---------TSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp --HHHHHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 377888888887 46888 99999999999999999887543
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=212.65 Aligned_cols=176 Identities=24% Similarity=0.426 Sum_probs=133.6
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.++++.++....+.+++ +..+.+.||||+|++++.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~Dt~G~~~~~ 72 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG------------DKVATMQVWDTAGQERFQ 72 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSS------------SCCEEEEEECCC------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcC------------CcEEEEEEEECCCChHhh
Confidence 34568999999999999999999999998888889999888888877642 456889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+++.+..|+.++....... ...++|+++|+||+|+.... +.+. .
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~Dl~~~~-~~v~----~ 139 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN--------SPETFPFVILGNKIDAEESK-KIVS----E 139 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS--------CTTTCCEEEEEECTTSCGGG-CCSC----H
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhccc--------CcCCCcEEEEEECCcccccc-ccCC----H
Confidence 999999999999999999999999999999999987763210 11378999999999996432 3444 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++++++..+ .+++++ |||++|.|++++++.+.+.+.++.
T Consensus 140 ~~~~~~~~~~~------~~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 140 KSAQELAKSLG------DIPLFL---------TSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHTT------SCCEEE---------EBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC------CCeEEE---------EecCCCCCHHHHHHHHHHHHHHhh
Confidence 77888887544 256788 999999999999999999887653
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=214.24 Aligned_cols=165 Identities=22% Similarity=0.345 Sum_probs=143.6
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
+...+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.++ +..+.+.||||+|++++.
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dt~G~~~~~ 77 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-------------DRTVRLQLWDTAGQERFR 77 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEEC-------------CeEEEEEEEECCCcHHHH
Confidence 4567999999999999999999999999988888999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..++..+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+. +.+. .
T Consensus 78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~~--~~~~----~ 139 (179)
T 2y8e_A 78 SLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG------------SDVIIMLVGNKTDLSDK--RQVS----T 139 (179)
T ss_dssp GGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT------------TSSEEEEEEECGGGGGG--CCSC----H
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECCccccc--CcCC----H
Confidence 9999999999999999999999999999999999877632 36899999999999765 4555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++++.+++..+ +++++ +||++|.|++++++.+.+.+
T Consensus 140 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 140 EEGERKAKELN-------VMFIE---------TSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp HHHHHHHHHHT-------CEEEE---------EBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHH
Confidence 77888888877 46788 99999999999998887654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=209.54 Aligned_cols=164 Identities=17% Similarity=0.196 Sum_probs=117.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|++..+. ...++.+.++ .+.+.++ +..+.+.+|||+|++++..++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~ 66 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVD-------------GEEASLMVYDIWEQDGGRWLP 66 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEET-------------TEEEEEEEEECC---------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEEC-------------CEEEEEEEEECCCCccchhhh
Confidence 579999999999999999999976553 3345556555 3455554 678899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+. +.+.. +++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~Dl~~~--~~~~~----~~~ 129 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-----------TDDVPIILVGNKSDLVRS--REVSV----DEG 129 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC--------------CCCEEEEEECTTCCSS--CCSCH----HHH
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEeccccccc--cccCH----HHH
Confidence 9999999999999999999999999999999987632 247899999999999865 55653 778
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+.++...+ ++|+| |||++|.|++++++.+.+.+.++
T Consensus 130 ~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 130 RACAVVFD-------CKFIE---------TSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHTT-------CEEEE---------CBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-------CcEEE---------eccCCCCCHHHHHHHHHHHHHhc
Confidence 88888887 46888 99999999999999999887654
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=223.50 Aligned_cols=168 Identities=23% Similarity=0.413 Sum_probs=139.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.+|++.++..+.+.++ +..+.+.||||+|+++|.
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 76 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE-------------GKRIKAQIWDTAGQERYR 76 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEET-------------TEEEEEEEECCTTTTTTT
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-------------CEEEEEEEEECCCccchh
Confidence 3567999999999999999999999999988888999999988888876 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+.++..... .++|++||+||+|+... +.+..
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~------------~~~piilv~nK~Dl~~~--~~v~~---- 138 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD------------DNVAVGLIGNKSDLAHL--RAVPT---- 138 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--------------CEEEEEECCGGGGGG--CCSCH----
T ss_pred hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEECcccccc--cccCH----
Confidence 9999999999999999999999999999999999987642 36899999999999865 45553
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++..+++..+ ++|+| +||++|.|++++|+.+.+.+.++
T Consensus 139 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 139 EESKTFAQENQ-------LLFTE---------TSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHTT-------CEEEE---------CCCC-CCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 77888888876 46788 99999999999999998877654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=212.49 Aligned_cols=177 Identities=20% Similarity=0.360 Sum_probs=144.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCC-------CCCCccC---------------
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSG-------SSSNSIK--------------- 76 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------~~~~~i~--------------- 76 (333)
...+||+|+|++|||||||+++|++..+...+.+|++.++..+.+.+++.. .++..+.
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 457899999999999999999999999988889999999988888775311 0000000
Q ss_pred --CCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE
Q 019959 77 --GDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 154 (333)
Q Consensus 77 --~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi 154 (333)
......+.+.||||+|++++..++..+++.+|++|+|||++++.+++.+..|+.++.... ++|+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--------------~~pi 150 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--------------NYII 150 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--------------CCEE
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--------------CCcE
Confidence 011223889999999999999999999999999999999999999999999999998873 4899
Q ss_pred EEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 155 VVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 155 ivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++|+||+| ... +.+. .++++++++..+ +++++ +||++|.|++++++.+.+.+.++
T Consensus 151 ilv~NK~D-~~~--~~~~----~~~~~~~~~~~~-------~~~~~---------~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 151 ILVANKID-KNK--FQVD----ILEVQKYAQDNN-------LLFIQ---------TSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp EEEEECTT-CC---CCSC----HHHHHHHHHHTT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEECCC-ccc--ccCC----HHHHHHHHHHcC-------CcEEE---------EecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999 322 4455 378889998876 46888 99999999999999999888765
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=215.97 Aligned_cols=172 Identities=24% Similarity=0.455 Sum_probs=146.1
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
+.+....+||+|+|++|||||||+++|++..+...+.++++.++....+.++ +..+.+.||||+|++
T Consensus 14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~ 80 (213)
T 3cph_A 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-------------GKKVKLQLWDTAGQE 80 (213)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEET-------------TEEEEEEEECCTTGG
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEEC-------------CEEEEEEEEeCCCcH
Confidence 3445667999999999999999999999999888888999999988888876 567899999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
++..++..++..+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+.. +.+.
T Consensus 81 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~Dl~~---~~~~-- 143 (213)
T 3cph_A 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN------------DEAQLLLVGNKSDMET---RVVT-- 143 (213)
T ss_dssp GGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT------------TCSEEEEEEECTTCSS---CCSC--
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECCCCcc---cccC--
Confidence 9999989999999999999999999999999999999987742 3689999999999943 4444
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
.++++.+++.++ ++|++ |||++|.|++++++.+.+.+.++..
T Consensus 144 --~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 144 --ADQGEALAKELG-------IPFIE---------SSAKNDDNVNEIFFTLAKLIQEKID 185 (213)
T ss_dssp --HHHHHHHHHHHT-------CCEEE---------CBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 377888888887 46777 9999999999999999998876543
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=208.86 Aligned_cols=164 Identities=21% Similarity=0.327 Sum_probs=139.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.+...+.+|.+..+. +.+.++ +..+.+.+|||+|++++..+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~l~D~~G~~~~~~~ 67 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVD-------------CQQCMLEILDTAGTEQFTAM 67 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESS-------------SCEEEEEEEEECSSCSSTTH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEEC-------------CEEEEEEEEECCChHHHHHH
Confidence 3589999999999999999999999988888888886653 445544 56889999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+. +.+. .++
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~----~~~ 130 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-----------TEDVPMILVGNKCDLEDE--RVVG----KEQ 130 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-----------CSCCCEEEEEECTTCGGG--CCSC----HHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----------cCCCcEEEEEECcccccc--ccCC----HHH
Confidence 99999999999999999999999999999998877532 137899999999999765 4555 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++++++.++ .++|++ +||++|.|++++++.+.+.+
T Consensus 131 ~~~~~~~~~------~~~~~~---------~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 131 GQNLARQWC------NCAFLE---------SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp HHHHHHHTT------SCEEEE---------CBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHcc------CCcEEE---------ecCCCCCCHHHHHHHHHHHH
Confidence 888888874 256888 99999999999999988765
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=207.07 Aligned_cols=164 Identities=25% Similarity=0.366 Sum_probs=139.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.+...+.++.+..+ .+.+.++ +..+.+.||||+|++++..+
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~l~D~~G~~~~~~~ 67 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVD-------------SSPSVLEILDTAGTEQFASM 67 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCCTTCCHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEEC-------------CEEEEEEEEECCCchhhHHH
Confidence 358999999999999999999999988888888876544 5566665 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..++..+|++++|||++++.+++.+..|+.++..... ..++|+++|+||+|+... +.+.. ++
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~~----~~ 130 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-----------YEKVPVILVGNKVDLESE--REVSS----SE 130 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-----------TSCCCEEEEEECGGGGGG--CCSCH----HH
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECCccccc--ccCCH----HH
Confidence 99999999999999999999999999999999887642 137899999999999754 45553 77
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++++++.++ +++++ +||++|.|++++++.+.+.+.
T Consensus 131 ~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 131 GRALAEEWG-------CPFME---------TSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHT-------SCEEE---------ECTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-------CCEEE---------ecCCCCcCHHHHHHHHHHHHh
Confidence 888888887 46888 999999999888888877664
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=220.47 Aligned_cols=181 Identities=23% Similarity=0.445 Sum_probs=148.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.+|++.++..+.+.++..+..... .....+.+.||||+|+++|.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS---GKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC----------CCEEEEEEEEEEEESHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccc---cCceeEEEEEEECCCcHhHH
Confidence 466799999999999999999999999988888889999888888877621100000 01126889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||+++..+++.+..|+..+..... ..++|++||+||+|+... +.+. .
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~-----------~~~~piilV~NK~Dl~~~--~~v~----~ 161 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY-----------CENPDIVLIGNKADLPDQ--REVN----E 161 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCT-----------TTCCEEEEEEECTTCGGG--CCSC----H
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-----------cCCCCEEEEEECCccccc--cccC----H
Confidence 9999999999999999999999999999999988765431 137899999999999765 4555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++++++++.++ ++|++ |||++|.|++++++.+.+.+.++..
T Consensus 162 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 162 RQARELADKYG-------IPYFE---------TSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp HHHHHHHHHTT-------CCEEE---------EBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-------CcEEE---------EECCCCCCHHHHHHHHHHHHHHHhh
Confidence 77888998887 46788 9999999999999999999887543
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=214.03 Aligned_cols=173 Identities=20% Similarity=0.339 Sum_probs=146.1
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
..+....+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.++ +..+.+.||||+|++
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD-------------GEEVQIDILDTAGQE 73 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCCTT
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEEC-------------CEEEEEEEEcCCChh
Confidence 34456779999999999999999999999988888888887665 3455554 567889999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 174 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~ 174 (333)
++..++..++..+|++|+|||+++..+|+.+..|+..+..... ..++|++||+||+|+... +.+.
T Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~-- 138 (206)
T 2bov_A 74 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-----------DENVPFLLVGNKSDLEDK--RQVS-- 138 (206)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-----------CSCCCEEEEEECTTCGGG--CCSC--
T ss_pred hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEeccCcccc--cccc--
Confidence 9999999999999999999999999999999999999988742 237899999999999865 4555
Q ss_pred cHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 175 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
.+++.++++.++ ++|++ +||++|.|++++|+.+.+.+..+..
T Consensus 139 --~~~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~i~~~~~ 180 (206)
T 2bov_A 139 --VEEAKNRAEQWN-------VNYVE---------TSAKTRANVDKVFFDLMREIRARKM 180 (206)
T ss_dssp --HHHHHHHHHHHT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHccc
Confidence 377888988887 46777 9999999999999999999887643
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=218.75 Aligned_cols=167 Identities=22% Similarity=0.315 Sum_probs=141.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|++..+...+.+|++.++ .+.+.++ +..+.+.||||+|+++|..
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~ 91 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID-------------TQRIELSLWDTSGSPYYDN 91 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESS-------------SSEEEEEEEEECCSGGGTT
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEEC-------------CEEEEEEEEeCCCcHhhhH
Confidence 4578999999999999999999999999888888888776 3455554 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----------c
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK----------E 167 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~----------~ 167 (333)
++..+++.+|++|+|||++++.+|+.+ ..|+..+.... .++|++|||||+|+... .
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~ 158 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-------------PNTKMLLVGCKSDLRTDVSTLVELSNHR 158 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTCEEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-------------CCCCEEEEEechhhccchhhhhhhcccc
Confidence 999999999999999999999999998 78999998764 27899999999999742 1
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeec-cCcCHHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK-EARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk-~g~~v~~~~~~l~~~l~~ 231 (333)
.+.++ .++++++++.++. ++|+| |||+ +|.|++++|+.+.+.+++
T Consensus 159 ~~~v~----~~~~~~~~~~~~~------~~~~e---------~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 159 QTPVS----YDQGANMAKQIGA------ATYIE---------CSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCCCC----HHHHHHHHHHHTC------SEEEE---------CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCC----HHHHHHHHHHcCC------CEEEE---------eeeccCCcCHHHHHHHHHHHHhh
Confidence 24455 3778999998874 46777 9999 688899998888887764
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=215.77 Aligned_cols=173 Identities=20% Similarity=0.266 Sum_probs=135.5
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
+......+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|++
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVD-------------GRPVRLQLCDTAGQD 79 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEET-------------TEEEEEEEEECCCST
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEEC-------------CEEEEEEEEECCCCH
Confidence 34466789999999999999999999999988888888887655 4455554 567889999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc------
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE------ 167 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~------ 167 (333)
+|..++..++.++|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+....
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ilv~nK~Dl~~~~~~~~~~ 146 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-------------PKAPIILVGTQSDLREDVKVLIEL 146 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------SSSCEEEEEECGGGGGCHHHHHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEECHhhhhchhhhhhh
Confidence 99999999999999999999999999999996 7999998874 278999999999997531
Q ss_pred ----CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 168 ----GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 168 ----~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
.+.+. .+++..+++.+++ .+|+| |||++|.|++++|+.+.+.+.+..
T Consensus 147 ~~~~~~~v~----~~~~~~~~~~~~~------~~~~~---------~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 147 DKCKEKPVP----EEAAKLLAEEIKA------ASYIE---------CSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp HTTTCCCCC----HHHHHHHHHHHTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccccccCC----HHHHHHHHHhcCC------cEEEE---------EecCCCCCHHHHHHHHHHHHhccc
Confidence 24455 3778899998884 36777 999999999999999998887653
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=210.67 Aligned_cols=171 Identities=20% Similarity=0.332 Sum_probs=143.8
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
.....+||+|+|++|||||||+++|++..+...+.+|.+..+ ...+.++ +..+.+.||||+|++++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G~~~~ 79 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD-------------GEEVQIDILDTAGQEDY 79 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCCTTCC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEEC-------------CEEEEEEEEECCCCccc
Confidence 345679999999999999999999999988888888877665 3444554 56788999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..++..+|++|+|||++++.+|+.+..|+.++..... ..++|++||+||+|+.+. +.+.
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~---- 142 (187)
T 2a9k_A 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-----------DENVPFLLVGNKSDLEDK--RQVS---- 142 (187)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-----------CTTCCEEEEEECGGGGGG--CCSC----
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECcccccc--CccC----
Confidence 99999999999999999999999999999999999887642 136899999999999765 4455
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
.++++++++.++ ++|++ +||++|.|++++++.+.+.+.++..
T Consensus 143 ~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 143 VEEAKNRAEQWN-------VNYVE---------TSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-------CeEEE---------eCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 377888888877 46777 9999999999999999998877654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-29 Score=207.30 Aligned_cols=164 Identities=20% Similarity=0.337 Sum_probs=137.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.+...+.+|.+..+. ..+.++ +..+.+.||||+|++++..+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~l~D~~G~~~~~~~ 68 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD-------------GEEVQIDILDTAGQEDYAAI 68 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEET-------------TEEEEEEEEECCC---CHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEEC-------------CEEEEEEEEECCCcchhHHH
Confidence 4689999999999999999999999888888888776653 444554 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..++..+|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.+. +.+. .++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~--~~~~----~~~ 131 (168)
T 1u8z_A 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-----------DENVPFLLVGNKSDLEDK--RQVS----VEE 131 (168)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-----------CTTSCEEEEEECGGGGGG--CCSC----HHH
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEECcccccc--CccC----HHH
Confidence 99999999999999999999999999999999887642 136899999999999765 4455 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++++++..+ +++++ +||++|.|++++++.+.+.+.
T Consensus 132 ~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 132 AKNRADQWN-------VNYVE---------TSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CeEEE---------eCCCCCCCHHHHHHHHHHHHH
Confidence 888888887 46778 999999999999999988764
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-29 Score=213.10 Aligned_cols=168 Identities=26% Similarity=0.414 Sum_probs=145.9
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|++..+...+.++++.++..+.+.++ +..+.+.||||+|++++.
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD-------------GNKAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECSSGGGC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEEC-------------CeEEEEEEEeCCCchhhh
Confidence 3456899999999999999999999999988889999999988888776 567899999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.++..+..|+.++..... ..++|++||+||+|+.. +.+. .
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~p~ilv~nK~Dl~~---~~~~----~ 140 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-----------RNDIVNMLVGNKIDKEN---REVD----R 140 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-----------CSCCEEEEEEECTTSSS---CCSC----H
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-----------cCCCcEEEEEECCcCcc---cccC----H
Confidence 9999999999999999999999999999999999877642 13789999999999953 3444 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++.++++.++ ++|++ |||++|.|++++++.+.+.+...
T Consensus 141 ~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 141 NEGLKFARKHS-------MLFIE---------ASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcC-------CEEEE---------ecCCCCCCHHHHHHHHHHHHHhh
Confidence 77888888877 46777 99999999999999998887653
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=212.68 Aligned_cols=168 Identities=20% Similarity=0.251 Sum_probs=141.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++ .+.+.++ +..+.+.||||+|+++ .
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G~~~-~ 89 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATID-------------DEVVSMEILDTAGQED-T 89 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCCCCC-C
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEEC-------------CEEEEEEEEECCCCCc-c
Confidence 34578999999999999999999999999888888888665 4445554 5678999999999988 7
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+... +.+. .
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~NK~Dl~~~--~~v~----~ 152 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-----------PKNVTLILVGNKADLDHS--RQVS----T 152 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-----------TSCCCEEEEEECGGGGGG--CCSC----H
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-----------CCCCcEEEEEECcccccc--cccC----H
Confidence 7788889999999999999999999999999999877532 137899999999999865 5555 3
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc-CHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~-~v~~~~~~l~~~l~~~~ 233 (333)
++++++++.++ ++|+| |||++|. |++++|+.+.+.+.++.
T Consensus 153 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 153 EEGEKLATELA-------CAFYE---------CSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHT-------SEEEE---------CCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CeEEE---------ECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 77888988886 46888 9999999 99999999999887653
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=217.14 Aligned_cols=171 Identities=22% Similarity=0.332 Sum_probs=108.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCc--eEEEEEEeCCCch
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER--DFFVELWDISGHE 94 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~i~Dt~G~e 94 (333)
...+||+|+|++|||||||+++|++. .+...+.+|++.++..+.+.++ +. .+.+.||||+|++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP-------------DTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECT-------------TSSEEEEEEEEETTTTH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEEC-------------CcccEEEEEEEECCCcH
Confidence 46789999999999999999999998 8888888998888888888775 44 7899999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC-ccCCccCc
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA-KEGTRGSS 173 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~-~~~r~v~~ 173 (333)
++..++..+++.+|++|+|||++++.+|+.+..|+..+...... ...++|++||+||+|+.. . +.+.
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---------~~~~~piilv~nK~Dl~~~~--~~v~- 152 (208)
T 2yc2_C 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPD---------RERPLRAVLVANKTDLPPQR--HQVR- 152 (208)
T ss_dssp HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSC---------TTSCCEEEEEEECC---------CCC-
T ss_pred HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcc---------cccCCcEEEEEECcccchhh--ccCC-
Confidence 99999999999999999999999999999999999999886420 013789999999999986 4 4555
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeecc-CcCHHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKE-ARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~-g~~v~~~~~~l~~~l~~~~ 233 (333)
.+++.++++.++ ++|++ |||++ |.|++++++.+.+.+.+..
T Consensus 153 ---~~~~~~~~~~~~-------~~~~~---------~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 153 ---LDMAQDWATTNT-------LDFFD---------VSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp ---HHHHHHHHHHTT-------CEEEE---------CCC-------CHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcC-------CEEEE---------eccCCCCcCHHHHHHHHHHHHHHHH
Confidence 378899998887 46888 99999 9999999999999887653
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=212.32 Aligned_cols=173 Identities=27% Similarity=0.454 Sum_probs=145.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|++..+...+.++++.++....+.++ +..+.+.||||+|++++..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 72 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-------------DRLVTMQIWDTAGQERFQS 72 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS-------------SCEEEEEEEEECSSGGGSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-------------CEEEEEEEEeCCCcHHHHH
Confidence 456899999999999999999999999888889999999988888775 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+.++...... ....++|++||+||+|+.. +.+. .+
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~piilv~nK~Dl~~---~~~~----~~ 137 (207)
T 1vg8_A 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP--------RDPENFPFVVLGNKIDLEN---RQVA----TK 137 (207)
T ss_dssp SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC--------SSGGGSCEEEEEECTTSSC---CCSC----HH
T ss_pred hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhccc--------ccCCCCcEEEEEECCCCcc---cccC----HH
Confidence 9889999999999999999999999999999988765310 0013689999999999973 3444 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++..++.... .++|++ +||++|.|++++++.+.+.+.+...
T Consensus 138 ~~~~~~~~~~------~~~~~~---------~Sa~~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 138 RAQAWCYSKN------NIPYFE---------TSAKEAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp HHHHHHHHTT------SCCEEE---------CBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC------CceEEE---------EeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 7788877433 256778 9999999999999999999887643
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=208.72 Aligned_cols=166 Identities=20% Similarity=0.290 Sum_probs=139.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|++++..
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~ 68 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-------------GKPVNLGLWDTAGQEDYDR 68 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEET-------------TEEEEEEEECCCCSGGGTT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEEC-------------CEEEEEEEEECCCCHhHHH
Confidence 4578999999999999999999999998888888877655 4445554 6788999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE---------- 167 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~---------- 167 (333)
++..+++.+|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+....
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~ 135 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-------------PNTPIILVGTKLDLRDDKDTIEKLKEKK 135 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------TTSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-------------CCCCEEEEeEcccccccchhhhhhcccc
Confidence 9999999999999999999999999997 7999988764 268999999999997642
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+.+. .+++..+++.+++ .+|++ |||++|.|++++++.+.+.+.
T Consensus 136 ~~~v~----~~~~~~~~~~~~~------~~~~~---------~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 136 LTPIT----YPQGLAMAKEIGA------VKYLE---------CSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp CCCCC----HHHHHHHHHHTTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHS
T ss_pred cccCC----HHHHHHHHHhcCC------cEEEE---------ecCCCccCHHHHHHHHHHHHh
Confidence 13444 3778889988874 26777 999999999999988887664
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=212.56 Aligned_cols=170 Identities=20% Similarity=0.301 Sum_probs=141.3
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
.+.....+||+|+|++|||||||+++|+++.+...+.+|++.++.. .+.++ +..+.+.||||+|++
T Consensus 19 ~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~-------------~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVD-------------GKQVELALWDTAGQE 84 (201)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEET-------------TEEEEEEEECCCCSG
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEEC-------------CEEEEEEEEECCCch
Confidence 3445677999999999999999999999999888888888877753 35554 567899999999999
Q ss_pred hhhhhHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC-----
Q 019959 95 RYKDCRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG----- 168 (333)
Q Consensus 95 ~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~----- 168 (333)
++..++..+++.+|++|+|||++++.+|+.+ ..|+..+.... .++|++||+||+|+.....
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~ 151 (201)
T 2gco_A 85 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-------------PNVPIILVGNKKDLRQDEHTRREL 151 (201)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------TTCCEEEEEECGGGTTCHHHHHHH
T ss_pred hHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEecHHhhcCccchhhh
Confidence 9999999999999999999999999999998 68998888764 2789999999999976421
Q ss_pred -----CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 169 -----TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 169 -----r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+.+. .+++..+++.+++ .+|+| |||++|.|++++++.+.+.++
T Consensus 152 ~~~~~~~v~----~~~~~~~~~~~~~------~~~~~---------~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 152 AKMKQEPVR----SEEGRDMANRISA------FGYLE---------CSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HTTTCCCCC----HHHHHHHHHHTTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccCcCC----HHHHHHHHHhCCC------cEEEE---------eeCCCCCCHHHHHHHHHHHHh
Confidence 2344 3778889988874 25777 999999999999999888764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=206.22 Aligned_cols=168 Identities=20% Similarity=0.359 Sum_probs=140.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|++..+...+.+|.+. .....+.++ +..+.+.||||+|++++..
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~ 67 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVID-------------GETCLLDILDTAGQEEYSA 67 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEET-------------TEEEEEEEEECCCC---CT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEEC-------------CcEEEEEEEECCCcHHHHH
Confidence 35689999999999999999999999888888777654 444555554 5778899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.. +.+. .+
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~i~v~nK~Dl~~---~~~~----~~ 129 (189)
T 4dsu_A 68 MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-----------SEDVPMVLVGNKCDLPS---RTVD----TK 129 (189)
T ss_dssp THHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-----------CSCCCEEEEEECTTSSS---CSSC----HH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEECccCcc---cccC----HH
Confidence 999999999999999999999999999999999988643 24789999999999974 3344 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
.++.+++.++ ++|++ +||++|.|++++++.+.+.+.....
T Consensus 130 ~~~~~~~~~~-------~~~~~---------~Sa~~g~gi~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 130 QAQDLARSYG-------IPFIE---------TSAKTRQGVDDAFYTLVREIRKHKE 169 (189)
T ss_dssp HHHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHhhh
Confidence 7888999887 46888 9999999999999999998877543
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=215.46 Aligned_cols=168 Identities=18% Similarity=0.305 Sum_probs=139.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|+++|..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~ 72 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD-------------GQIVNLGLWDTAGQEDYSR 72 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECS-------------SCEEEEEEECCCCCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEEC-------------CEEEEEEEEECCCcHHHHH
Confidence 4568999999999999999999999998888888888666 3445554 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC------Ccc
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG------TRG 171 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~------r~v 171 (333)
++..+++.+|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+..... +.+
T Consensus 73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~v 139 (212)
T 2j0v_A 73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-------------PNVPIVLVGTKLDLRDDKGYLADHTNVI 139 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTCCEEEEEECHHHHTCHHHHHTCSSCC
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEeCHHhhhCccccccccCCC
Confidence 9999999999999999999999999986 8999998874 2789999999999976421 112
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
. .+++.++++.+++ .+|+| |||++|.|++++|+.+.+.+.+.
T Consensus 140 ~----~~~~~~~~~~~~~------~~~~~---------~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 140 T----STQGEELRKQIGA------AAYIE---------CSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp C----HHHHHHHHHHHTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHHCC
T ss_pred C----HHHHHHHHHHcCC------ceEEE---------ccCCCCCCHHHHHHHHHHHHhhh
Confidence 3 3778889998885 36777 99999999999999998877654
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=210.25 Aligned_cols=166 Identities=18% Similarity=0.219 Sum_probs=131.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-h
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-Y 96 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-~ 96 (333)
..+||+|||++|||||||+++|++. .+... .++++.++..+.+.++ +..+.+.+|||+|++. +
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~l~~~Dt~~~~~~~ 70 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVD-------------GESATIILLDMWENKGEN 70 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEET-------------TEEEEEEEECCCCC----
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEEC-------------CeEEEEEEEEeccCcchh
Confidence 4689999999999999999999963 34433 3456778877777776 6778899999999876 4
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..+...+++.+|++|+|||++++.||+.+..|+..+..... ..++|+++||||+|+... +.+.
T Consensus 71 ~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-----------~~~~piilV~NK~Dl~~~--r~v~---- 133 (192)
T 2cjw_A 71 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-----------TEDIPIILVGNKSDLVRX--REVS---- 133 (192)
T ss_dssp CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-----------TSCCCEEEEEECTTCGGG--CCSC----
T ss_pred hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----------CCCCeEEEEEechhhhcc--cccc----
Confidence 55667788899999999999999999999999988876521 136899999999999754 5555
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++++.++..++ ++|+| |||++|.|++++|+.+++.+...
T Consensus 134 ~~~~~~~a~~~~-------~~~~e---------~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 134 VSEGRAXAVVFD-------XKFIE---------TSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHTT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-------CceEE---------eccccCCCHHHHHHHHHHHHHhh
Confidence 377888888776 46888 99999999999999999887544
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=213.90 Aligned_cols=167 Identities=20% Similarity=0.257 Sum_probs=132.9
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------CCcccceeEEEEEE-EeCCCCCCCCccCCCCCceEE
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSR-----------PSQTIGCTVGVKHI-TYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 84 (333)
.....+||+|+|++|||||||++.+. +.+... +.+|++.++..+.+ . .++..+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~~~~ 75 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGE-------------VKGFKTR 75 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCC-------------SSSCEEE
T ss_pred ccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeeccccccc-------------ccCCceE
Confidence 34567999999999999999996555 444443 33466655544433 2 2367889
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECC------CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEe
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLS------QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 158 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s------~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVg 158 (333)
+.||||+|+++|..++..+++.+|++|+|||++ +..+|+.+..|+.++.... .++|++||+
T Consensus 76 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~-------------~~~piilv~ 142 (198)
T 3t1o_A 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL-------------DDVPIVIQV 142 (198)
T ss_dssp EEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCT-------------TSSCEEEEE
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcccc-------------CCCCEEEEE
Confidence 999999999999999999999999999999999 5677888888988874332 479999999
Q ss_pred eCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 159 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 159 NK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
||+|+... +. .++++++++.+++ .+|+| |||++|.|++++|+.+.+.+.++.
T Consensus 143 NK~Dl~~~----~~----~~~~~~~~~~~~~------~~~~~---------~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 143 NKRDLPDA----LP----VEMVRAVVDPEGK------FPVLE---------AVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp ECTTSTTC----CC----HHHHHHHHCTTCC------SCEEE---------CBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred Echhcccc----cC----HHHHHHHHHhcCC------ceEEE---------EecCCCcCHHHHHHHHHHHHHHHh
Confidence 99999754 33 3778888887774 16777 999999999999999999888764
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=214.86 Aligned_cols=168 Identities=18% Similarity=0.344 Sum_probs=121.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|+++|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~l~Dt~G~~~~~~ 97 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVK-------------GKPVHLHIWDTAGQDDYDR 97 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEET-------------TEEEEEEEEEC--------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEEC-------------CEEEEEEEEECCCchhhhH
Confidence 4579999999999999999999999988877888876555 4445554 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE---------- 167 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~---------- 167 (333)
++..++..+|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+....
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~ 164 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-------------KKVPIIVVGCKTDLRKDKSLVNKLRRNG 164 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------SSCCEEEEEECGGGGSCHHHHHHHHHTT
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEChhhhccchhhhhhcccc
Confidence 9999999999999999999999999996 7999998774 278999999999998642
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+.++ .++++++++.+++ .+|+| |||++|.|++++|+.+.+.++..
T Consensus 165 ~~~v~----~~~~~~~~~~~~~------~~~~~---------~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 165 LEPVT----YHRGQEMARSVGA------VAYLE---------CSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp CCCCC----HHHHHHHHHHTTC------SEEEE---------CBTTTTBSHHHHHHHHHHHHHHC
T ss_pred cCccc----HHHHHHHHHhcCC------CEEEE---------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 12344 3778899988874 26777 99999999999999999888754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-29 Score=211.95 Aligned_cols=166 Identities=20% Similarity=0.303 Sum_probs=123.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++..+.. .+.+ ++..+.+.||||+|++++..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~-------------~~~~~~~~i~Dt~G~~~~~~ 71 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVV-------------NGATVNLGLWDTAGQEDYNR 71 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC--------------------CEEECCCC-CTTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEE-------------CCEEEEEEEEECCCChhhhh
Confidence 456899999999999999999999998887777877655422 2222 25677899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC--------C
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG--------T 169 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~--------r 169 (333)
++..+++.+|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+... +
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~ 138 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-------------PGVPIVLVGTKLDLRDDKQFFIDHPGAV 138 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTCCEEEEEECHHHHTCHHHHHHC--CC
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEechhhhcCcccccccccCC
Confidence 9999999999999999999999999997 7999998874 2689999999999976421 1
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+. .+++.++++.+++ .+|+| |||++|.|++++|+.+.+.++
T Consensus 139 ~v~----~~~~~~~~~~~~~------~~~~~---------~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 139 PIT----TVQGEELKKLIGA------PAYIE---------CSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCC----HHHHHHHHHHHTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHS
T ss_pred CCC----HHHHHHHHHHcCC------CEEEE---------EECCCCCCHHHHHHHHHHHHh
Confidence 123 3778899998884 36777 999999999999998887653
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-28 Score=211.80 Aligned_cols=169 Identities=21% Similarity=0.317 Sum_probs=135.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++.++... +.++ +..+.+.||||+|++++..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~-------------~~~~~~~i~Dt~G~~~~~~ 88 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVD-------------GKQVELALWDTAGQEDYDR 88 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEET-------------TEEEEEEEEECTTCTTCTT
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEEC-------------CEEEEEEEEECCCcHHHHH
Confidence 3568999999999999999999999998888888888776443 5554 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC---------
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG--------- 168 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~--------- 168 (333)
++..++..+|++|+|||++++.+|+.+ ..|+..+.... .++|+++|+||+|+.....
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~~ 155 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-------------PNVPIILVANKKDLRSDEHVRTELARMK 155 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------TTCCEEEEEECGGGGGCHHHHHHHHHTT
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEEchhhhccccchhhhhhcc
Confidence 999999999999999999999999998 78999888764 2789999999999975411
Q ss_pred -CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 169 -TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 169 -r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.+. .+++..++...++ .+|++ |||++|.|++++++.+.+.+++..
T Consensus 156 ~~~v~----~~~~~~~~~~~~~------~~~~~---------~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 156 QEPVR----TDDGRAMAVRIQA------YDYLE---------CSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp CCCCC----HHHHHHHHHHTTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred cCCCC----HHHHHHHHHhcCC------CEEEE---------eeCCCCCCHHHHHHHHHHHHHHHh
Confidence 2344 3678888888874 25777 999999999999999988876543
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=204.14 Aligned_cols=169 Identities=21% Similarity=0.357 Sum_probs=130.9
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
+....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.++ +..+.+.||||+|++++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G~~~~ 82 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID-------------GETCLLDILDTAGQEEY 82 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCC----
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEEC-------------CEEEEEEEEECCChHHH
Confidence 345679999999999999999999999988777777776554 3455554 56788999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..++..+|++|+|||+++..+++.+..|+..+..... ..++|+++|+||+|+.. +.+.
T Consensus 83 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~p~ilv~nK~Dl~~---~~~~---- 144 (190)
T 3con_A 83 SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-----------SDDVPMVLVGNKCDLPT---RTVD---- 144 (190)
T ss_dssp -------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-----------CSCCCEEEEEECTTCSC---CCSC----
T ss_pred HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-----------CCCCeEEEEEECCcCCc---ccCC----
Confidence 99999999999999999999999999999999999877632 13689999999999976 2344
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
.++++++++.++ +++++ |||++|.|++++++.+.+.+.+..
T Consensus 145 ~~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 145 TKQAHELAKSYG-------IPFIE---------TSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 377888998887 46777 999999999999999998887643
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-30 Score=222.79 Aligned_cols=164 Identities=25% Similarity=0.475 Sum_probs=132.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++++.++....+.++ +..+.+.||||+|++++..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~ 97 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-------------GKTIKLQIWDTAGQERFRT 97 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEET-------------TEEEEEEEECCTTCTTCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEEC-------------CEEEEEEEEECCCcHhHHH
Confidence 557999999999999999999999999888888898999988888876 5678999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+... +.+.. +
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ilv~nK~Dl~~~--~~v~~----~ 159 (199)
T 3l0i_B 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS------------ENVNKLLVGNKCDLTTK--KVVDY----T 159 (199)
T ss_dssp CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-------------CCSEEEEC-CCSSCC----CCCCS----C
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc------------CCCCEEEEEECccCCcc--ccCCH----H
Confidence 999999999999999999999999999999999977642 47899999999999765 44443 4
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++.+++.++ ++|++ |||++|.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~-------~~~~~---------vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 160 TAKEFADSLG-------IPFLE---------TSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp C-CHHHHTTT-------CCBCC---------CCC---HHHHHHHHHHTTTT
T ss_pred HHHHHHHHcC-------CeEEE---------EECCCCCCHHHHHHHHHHHH
Confidence 5677888777 46888 99999988888887776544
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-28 Score=208.21 Aligned_cols=178 Identities=21% Similarity=0.305 Sum_probs=129.1
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
...+....+||+|+|++|||||||+++|++..+.. .+.+|++..+ ..+. ...+.+.||||+|
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~---------------~~~~~~~i~Dt~G 72 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFE---------------KGRVAFTVFDMGG 72 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEE---------------ETTEEEEEEEECC
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEE---------------eCCEEEEEEECCC
Confidence 34567788999999999999999999999999887 7888888544 3333 2467899999999
Q ss_pred chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 93 HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 93 ~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
++++..++..+++.+|++|+|||++++.+|+.+..|+..+....... ...++..++|+|||+||+|+.... .
T Consensus 73 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~piilv~NK~Dl~~~~--~-- 144 (199)
T 4bas_A 73 AKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIR----RELPGGGRVPFLFFANKMDAAGAK--T-- 144 (199)
T ss_dssp SGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHH----SBCTTSCBCCEEEEEECTTSTTCC--C--
T ss_pred CHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhh----hcccccCCCCEEEEEECcCCCCCC--C--
Confidence 99999999999999999999999999999999999998886641100 000111368999999999998652 1
Q ss_pred cccHHHHHHHHHHHcCCCCC--CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPS--SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~--~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
..++.+.+++... ...++|+| |||++|.|++++|+.|.+.+.+.
T Consensus 145 -------~~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 145 -------AAELVEILDLTTLMGDHPFVIFA---------SNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp -------HHHHHHHHTHHHHHTTSCEEEEE---------CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHhcchhhccCCeeEEEE---------eeCCCccCHHHHHHHHHHHHHHH
Confidence 1122222221000 01256777 99999999999999999988765
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-29 Score=219.03 Aligned_cols=169 Identities=24% Similarity=0.386 Sum_probs=145.2
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
........+||+|+|++|||||||+++|+.+.+...+.++.|.++....+.++ +..+.+.||||+|+
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~ 74 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-------------RGPIKFNVWDTAGQ 74 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-------------TEEEEEEEEEECSG
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEeCCCh
Confidence 34456778999999999999999999988887777788898988888888776 57789999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+++..++..+++.+|++|+|||++++.+|+.+..|+..+..... ++|++||+||+|+.+.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~p~ilv~nK~Dl~~~~---~~- 137 (221)
T 3gj0_A 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-------------NIPIVLCGNKVDIKDRK---VK- 137 (221)
T ss_dssp GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-------------TCCEEEEEECTTSSSCS---SC-
T ss_pred HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-------------CCCEEEEEECCcccccc---cc-
Confidence 99999999999999999999999999999999999999988753 78999999999997642 22
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+++..+++..+ ++|++ |||++|.|++++|+.+.+.+...
T Consensus 138 ----~~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 138 ----AKSIVFHRKKN-------LQYYD---------ISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp ----GGGCCHHHHHT-------CEEEE---------CBGGGTBTTTHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHhC
Confidence 34556677776 46788 99999999999999999887654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-28 Score=211.82 Aligned_cols=166 Identities=20% Similarity=0.286 Sum_probs=136.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|++++.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~ 92 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-------------GKPVNLGLWDTAGLEDYD 92 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC--------------CEEEEEEEEECCSGGGT
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEEC-------------CEEEEEEEEECCCchhhH
Confidence 45679999999999999999999999999888888876443 4555554 678889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC--------
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG-------- 168 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~-------- 168 (333)
.++..+++.+|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+.....
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~~~~~~~~~~~ 159 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-------------PNTPIILVGTKLDLRDDKDTIEKLKEK 159 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------SSCCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEechhhccchhhhhhhhcc
Confidence 99999999999999999999999999996 8999998874 3789999999999976421
Q ss_pred --CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 169 --TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 169 --r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.+. .+++..+++.+++ .+|+| |||++|.|++++|+.+.+.+
T Consensus 160 ~~~~v~----~~~~~~~~~~~~~------~~~~~---------~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 160 KLTPIT----YPQGLAMAKEIGA------VKYLE---------CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCCCCC----HHHHHHHHHHTTC------SEEEE---------CCTTTCTTHHHHHHHHHHTT
T ss_pred cccccc----HHHHHHHHHhcCC------cEEEE---------eeCCCCCCHHHHHHHHHHHh
Confidence 1244 3778889998885 35777 99999999999999887653
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-28 Score=202.15 Aligned_cols=164 Identities=23% Similarity=0.270 Sum_probs=134.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.+...+.++++.++. ..+..+ +..+.+.+|||+|++++..+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~~~Dt~G~~~~~~~ 67 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCD-------------KSICTLQITDTTGSHQFPAM 67 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEET-------------TEEEEEEEEECCSCSSCHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEEC-------------CEEEEEEEEECCCchhhHHH
Confidence 3589999999999999999999999887777888776653 334443 56788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...++..+|++|+|||++++.+++.+..|+..+..... ...++|+++|+||+|+... +.+.. ++
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~----------~~~~~pii~v~nK~Dl~~~--~~v~~----~~ 131 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG----------DVESIPIMLVGNKCDESPS--REVQS----SE 131 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC-------------CCCEEEEEECGGGGGG--CCSCH----HH
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC----------CCCCCCEEEEEEccccccc--cccCH----HH
Confidence 99999999999999999999999999999888876521 0136899999999999765 44553 67
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++.++...+ ++|++ +||++|.|++++++.+.+.+
T Consensus 132 ~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 132 AEALARTWK-------CAFME---------TSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHhC-------CeEEE---------ecCCCCcCHHHHHHHHHHHH
Confidence 788888877 46778 99999999999998887643
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=197.55 Aligned_cols=162 Identities=22% Similarity=0.383 Sum_probs=136.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|++..+...+.++.+..+ .+.+.++ +..+.+.+|||+|++++..++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~~~D~~G~~~~~~~~ 68 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVID-------------GETCLLDILDTAGQEEYSAMR 68 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCCCSSCCHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEEC-------------CEEEEEEEEECCCchhhhHHH
Confidence 57999999999999999999999988877777776544 4455554 567889999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..++..+|++|+|||+++..+++.+..|+..+..... ..++|+++|+||+|+... .+. .+++
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-----------~~~~p~iiv~nK~Dl~~~---~~~----~~~~ 130 (166)
T 2ce2_X 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-----------SDDVPMVLVGNKSDLAAR---TVE----SRQA 130 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-----------CSCCCEEEEEECTTCSCC---CSC----HHHH
T ss_pred HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCcEEEEEEchhhhhc---ccC----HHHH
Confidence 9999999999999999999999999999999877632 136899999999999762 333 3778
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+++++.++ +++++ +||++|.|++++++.+.+.+.
T Consensus 131 ~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 131 QDLARSYG-------IPYIE---------TSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHT-------CCEEE---------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcC-------CeEEE---------ecCCCCCCHHHHHHHHHHHHH
Confidence 88988887 46778 999999999999999988764
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=199.64 Aligned_cols=161 Identities=20% Similarity=0.326 Sum_probs=124.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++.+.. +.+|++.. ...+.+ ..+.+.||||+|++++..++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~---------------~~~~~~i~Dt~G~~~~~~~~~ 62 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY---------------KNISFTVWDVGGQDKIRPLWR 62 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC---------------SSCEEEEEECCCCGGGHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE---------------CCEEEEEEEcCCChhhHHHHH
Confidence 589999999999999999999888764 56677743 344443 347799999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++.++|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.... . .+
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~----~-------~~ 120 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-----------LRDAVLLVFANKQDLPNAM----N-------AA 120 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCC----C-------HH
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-----------hcCCeEEEEEECcCCcCCC----C-------HH
Confidence 999999999999999999999999999998876421 1368999999999997541 1 23
Q ss_pred HHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 182 ~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++....+..... ..++++| |||++|.|++++++.+.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 121 EITDKLGLHSLRHRNWYIQA---------TCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHTTGGGCSSCCEEEEE---------CBTTTTBTHHHHHHHHHHHC--
T ss_pred HHHHHhCcccccCccEEEEE---------cccCCCcCHHHHHHHHHHHHhh
Confidence 344444421110 1245777 9999999999999998876643
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-28 Score=213.72 Aligned_cols=169 Identities=22% Similarity=0.334 Sum_probs=138.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|.+.++....+... .+..+.+.||||+|++++.
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~------------~~~~~~~~l~Dt~G~~~~~ 75 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDD------------QGNVIKFNVWDTAGQEKKA 75 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBT------------TSCEEEEEEEEECSGGGTS
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeC------------CCcEEEEEEEecCCchhhc
Confidence 3457899999999999999999999998888778888877766666543 1445889999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.+...++..+|++|+|||+++..+++.+..|+..+..... .++|++||+||+|+... +.+..
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~--~~~~~---- 137 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG------------NEAPIVVCANKIDIKNR--QKISK---- 137 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC------------SSSCEEEEEECTTCC------CCH----
T ss_pred hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC------------CCCCEEEEEECCCCccc--cccCH----
Confidence 9999999999999999999999999999999999987743 35899999999999765 44553
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+.+..++...+ ++|++ |||++|.|++++++.+.+.+...
T Consensus 138 ~~~~~~~~~~~-------~~~~~---------~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 138 KLVMEVLKGKN-------YEYFE---------ISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp HHHHHHTTTCC-------CEEEE---------EBTTTTBTTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcC-------CcEEE---------EecCCCCCHHHHHHHHHHHHhcc
Confidence 66667766655 46888 99999999999999998876543
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=204.06 Aligned_cols=164 Identities=20% Similarity=0.303 Sum_probs=129.6
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++.++.. +.. ..+.+.||||+|++++.
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~---------------~~~~~~l~Dt~G~~~~~ 81 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK---------------GNVTIKLWDIGGQPRFR 81 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE---------------TTEEEEEEEECCSHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe---------------CCEEEEEEECCCCHhHH
Confidence 3457999999999999999999999999888888888877643 332 35789999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+.... .
T Consensus 82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~~----~----- 141 (188)
T 1zd9_A 82 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-----------LQGIPVLVLGNKRDLPGAL----D----- 141 (188)
T ss_dssp TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCCEEEEEECTTSTTCC----C-----
T ss_pred HHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-----------cCCCCEEEEEECCCCccCC----C-----
Confidence 9999999999999999999999999999999988876421 1378999999999997641 1
Q ss_pred HHHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..++.+..+.... ...+++++ |||++|.|++++++.+.+.+
T Consensus 142 --~~~~~~~~~~~~~~~~~~~~~~---------~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 142 --EKELIEKMNLSAIQDREICCYS---------ISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp --HHHHHHHTTGGGCCSSCEEEEE---------CCTTTCTTHHHHHHHHHHTC
T ss_pred --HHHHHHHhChhhhccCCeeEEE---------EECCCCCCHHHHHHHHHHHH
Confidence 2233444432111 11256777 99999999999988887654
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-27 Score=196.56 Aligned_cols=165 Identities=22% Similarity=0.317 Sum_probs=126.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+. .+.+|++.. ...+.++ .+.+.+|||+|++++.
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~---------------~~~~~~~Dt~G~~~~~ 65 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTYK---------------NLKFQVWDLGGLTSIR 65 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEET---------------TEEEEEEEECCCGGGG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEEC---------------CEEEEEEECCCChhhh
Confidence 345689999999999999999999988875 456676644 4445443 5779999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|..+..|+..+..... ..++|+++|+||+|+.... .
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~--~------- 125 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-----------LRKAILVVFANKQDMEQAM--T------- 125 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCC--C-------
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-----------hCCCEEEEEEECCCCcCCC--C-------
Confidence 9999999999999999999999999999999988866521 1368999999999997642 1
Q ss_pred HHHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..++.+..+.... ...++++| |||++|.|++++++.+.+.+.+
T Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 126 --SSEMANSLGLPALKDRKWQIFK---------TSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp --HHHHHHHHTGGGCTTSCEEEEE---------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred --HHHHHHHhCchhccCCceEEEE---------CcCCCCcCHHHHHHHHHHHHhh
Confidence 1222333321100 01246777 9999999999999999887643
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=202.90 Aligned_cols=165 Identities=22% Similarity=0.247 Sum_probs=136.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++.++. ..+.++ +..+.+.||||+|++++..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 71 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCD-------------KSVCTLQITDTTGSHQFPA 71 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEET-------------TEEEEEEEEECCGGGSCHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEEC-------------CEEEEEEEEeCCChHHhHH
Confidence 45689999999999999999999999888778888776553 344443 5678899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|||++++.+|+.+..|+..+...... ..++|++||+||+|+.. +.+. .+
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----------~~~~piilv~nK~Dl~~---~~~~----~~ 134 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGS----------VEDIPVMLVGNKCDETQ---REVD----TR 134 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSC----------GGGSCEEEEEECTTCSS---CSSC----HH
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcC----------CCCCCEEEEEECccCCc---cccC----HH
Confidence 9999999999999999999999999998888877665310 12689999999999975 3344 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++..++..++ ++|++ +||++|.|++++++.+.+.+.
T Consensus 135 ~~~~~~~~~~-------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 135 EAQAVAQEWK-------CAFME---------TSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp HHHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHHCS
T ss_pred HHHHHHHHhC-------CeEEE---------EecCCCCCHHHHHHHHHHHHh
Confidence 7888888887 46777 999999999999988877543
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-27 Score=200.31 Aligned_cols=165 Identities=17% Similarity=0.263 Sum_probs=128.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++. ...+.+|++.. .+.+.++ .+.+.+|||+|++++..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~---------------~~~~~~~Dt~G~~~~~~ 77 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR---------------GFKLNIWDVGGQKSLRS 77 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET---------------TEEEEEEEECCSHHHHT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC---------------CEEEEEEECCCCHhHHH
Confidence 456899999999999999999999887 66777787744 4455443 47899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.... .
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~--~-------- 136 (186)
T 1ksh_A 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-----------LAGATLLIFANKQDLPGAL--S-------- 136 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCC--C--------
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-----------cCCCcEEEEEeCccCCCCC--C--------
Confidence 999999999999999999999999999999988876521 1368999999999997642 1
Q ss_pred HHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
..++.+.+++... ...++++| |||++|.|++++++.+.+.+.++
T Consensus 137 -~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 137 -CNAIQEALELDSIRSHHWRIQG---------CSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp -HHHHHHHTTGGGCCSSCEEEEE---------CCTTTCTTHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHhChhhccCCceEEEE---------eeCCCCCCHHHHHHHHHHHHHhc
Confidence 1222333332100 11356777 99999999999999998887654
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=201.66 Aligned_cols=165 Identities=19% Similarity=0.294 Sum_probs=125.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
+...+||+|+|++|||||||+++|++..+ ..+.+|+|.. .+.+.++ .+.+.+|||+|++++.
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~---------------~~~l~i~Dt~G~~~~~ 74 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ---------------GFKLNVWDIGGQRKIR 74 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET---------------TEEEEEEECSSCGGGH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC---------------CEEEEEEECCCCHHHH
Confidence 35679999999999999999999998755 3456677743 4445442 4789999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.... .
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~~--~------- 134 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-----------LSCVPVLIFANKQDLLTAA--P------- 134 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-----------GTTCCEEEEEECTTSTTCC--C-------
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-----------hcCCCEEEEEECcCcccCC--C-------
Confidence 9999999999999999999999999999999988754311 1368999999999997642 1
Q ss_pred HHHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..++.+.+++... ...++|+| |||++|.|++++|+.+.+.+.+
T Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 135 --ASEIAEGLNLHTIRDRVWQIQS---------CSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp --HHHHHHHTTGGGCCSSCEEEEE---------CCTTTCTTHHHHHHHHHHTC--
T ss_pred --HHHHHHHhCchhccCCceEEEE---------ccCCCCCCHHHHHHHHHHHHHh
Confidence 1233333332110 11246777 9999999999999998876543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-28 Score=206.87 Aligned_cols=172 Identities=20% Similarity=0.372 Sum_probs=117.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC--CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG--SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+||+|+|++|||||||+++|++. .+...+.+|+|.++....+.+.. .++..+.+.+|||+|+++|..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~----------~~~~~~~~~i~Dt~G~~~~~~ 71 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRD----------KRKRDLVLNVWDFAGREEFYS 71 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC-------------------CEEEEEEECSHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeecccc----------CCCCceEEEEEecCCCHHHHH
Confidence 479999999999999999999984 56667788889888766654321 113567899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCc-ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 99 CRSILYSQINGVIFVHDLSQR-RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~-~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
++..+++++|++++|||++++ .+|+.+..|+.++.... .++|++|||||+|+... +.+.. ...
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-------------~~~piilv~nK~Dl~~~--~~~~~-~~~ 135 (184)
T 2zej_A 72 THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-------------SSSPVILVGTHLDVSDE--KQRKA-CMS 135 (184)
T ss_dssp TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-------------TTCEEEEEEECGGGCCH--HHHHH-HHH
T ss_pred hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-------------CCCcEEEEEECCCcccc--hhhHH-HHH
Confidence 999999999999999999998 58999999999987763 26899999999999764 22210 001
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc-CHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLI 230 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~-~v~~~~~~l~~~l~ 230 (333)
+.+..+++.+++... .+|+| +||++|. +++++++.+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~---~~~~~---------~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 136 KITKELLNKRGFPAI---RDYHF---------VNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp HHHHHTTTCTTSCEE---EEEEE---------CCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcch---hheEE---------EecccCchhHHHHHHHHHHHHh
Confidence 233444444442100 12777 9999996 66666666665543
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-27 Score=204.31 Aligned_cols=163 Identities=20% Similarity=0.305 Sum_probs=122.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+. .+.+|++ +..+.+.+ ..+.+.||||+|++++.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~---------------~~~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY---------------KNICFTVWDVGGQDKIR 87 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEE---------------TTEEEEEEECC-----C
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEE---------------CCEEEEEEECCCCHhHH
Confidence 345689999999999999999999988875 3566666 33444544 24789999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+....
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-----------~~~~piilv~NK~Dl~~~~---------- 146 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE-----------LRDAVLLVFANKQDMPNAM---------- 146 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCC----------
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-----------cCCCeEEEEEECCCCCCCC----------
Confidence 9999999999999999999999999999999998876421 1368999999999997541
Q ss_pred HHHHHHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+++++..+..... ..++++| |||++|.|++++++.+.+.+
T Consensus 147 -~~~~i~~~~~~~~~~~~~~~~~~---------~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 147 -PVSELTDKLGLQHLRSRTWYVQA---------TCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp -CHHHHHHHTTGGGCSSCCEEEEE---------CBTTTTBTHHHHHHHHHHHT
T ss_pred -CHHHHHHHhCcccccCCceEEEE---------CcCCCcCCHHHHHHHHHHHH
Confidence 123444444432111 1245777 99999999999999988765
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=199.61 Aligned_cols=163 Identities=19% Similarity=0.261 Sum_probs=121.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+. .+.+|++.+ ...+.++ .+.+.||||+|++++..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVIN---------------NTRFLMWDIGGQESLRS 75 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEET---------------TEEEEEEECCC----CG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEEC---------------CEEEEEEECCCCHhHHH
Confidence 34689999999999999999999988876 566777644 3444443 37899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.... . .+
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~~----~----~~ 136 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-----------LRKAGLLIFANKQDVKECM----T----VA 136 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-----------GTTCEEEEEEECTTSTTCC----C----HH
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-----------hCCCeEEEEEECCCCcCCC----C----HH
Confidence 999999999999999999999999999999999877521 1368999999999997531 1 13
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++.+......+. ...++++| |||++|.|++++++.+.+.+
T Consensus 137 ~i~~~~~~~~~~--~~~~~~~~---------~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 137 EISQFLKLTSIK--DHQWHIQA---------CCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp HHHHHHTGGGCC--SSCEEEEE---------CBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHhChhhhc--CCCcEEEE---------ccCCCCcCHHHHHHHHHHHH
Confidence 333322211111 01256777 99999999999998887765
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-27 Score=200.61 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=123.5
Q ss_pred cCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 13 LNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 13 ~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
....+....+||+|+|++|||||||+++|+++.+ ..+.+|++.++ +.+.++ .+.+.||||+|
T Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~---------------~~~~~i~Dt~G 74 (181)
T 2h17_A 13 GLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVIN---------------NTRFLMWDIGG 74 (181)
T ss_dssp --------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEET---------------TEEEEEEEESS
T ss_pred CccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEEC---------------CEEEEEEECCC
Confidence 3455567789999999999999999999999887 55667777544 444443 37899999999
Q ss_pred chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 93 HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 93 ~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
++++..++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.... .
T Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~~----~ 139 (181)
T 2h17_A 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-----------LRKAGLLIFANKQDVKECM----T 139 (181)
T ss_dssp SGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCC----C
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-----------hCCCeEEEEEECCCcccCC----C
Confidence 999999999999999999999999999999999999988876421 1378999999999997531 1
Q ss_pred cccHHHHHHHHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.++. .+..+..... ..++++| |||++|.|++++++.+.+.
T Consensus 140 ----~~~i---~~~~~~~~~~~~~~~~~~---------~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 140 ----VAEI---SQFLKLTSIKDHQWHIQA---------CCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ----HHHH---HHHTTGGGCCSSCEEEEE---------CBTTTTBTHHHHHHHHHTC
T ss_pred ----HHHH---HHHhCcccccCCceEEEE---------ccCCCCcCHHHHHHHHHhh
Confidence 1222 2222211100 1246777 9999999999999888653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-27 Score=204.54 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=119.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+.+||+|+|++|||||||+++|+++.+. .+.+|++.+. ..+.++ .+.+.+|||+|++++..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~---------------~~~l~i~Dt~G~~~~~~ 84 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIA---------------GMTFTTFDLGGHIQARR 84 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEET---------------TEEEEEEEECC----CC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEEC---------------CEEEEEEECCCcHhhHH
Confidence 45679999999999999999999988764 4566776653 455553 27899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.. .++ .+
T Consensus 85 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~----~~~----~~ 145 (198)
T 1f6b_A 85 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET-----------IANVPILILGNKIDRPE----AIS----EE 145 (198)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTSCEEEEEECTTSTT----CCC----HH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-----------cCCCcEEEEEECCCccc----cCC----HH
Confidence 999999999999999999999999999999999876521 13789999999999975 233 25
Q ss_pred HHHHHHHHcC---------CCC-CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 179 AARQWVEKQG---------LLP-SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 179 ~~~~~~~~~~---------~~~-~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
++++++.... +.. ....++|+| |||++|.|++++|+.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 146 RLREMFGLYGQTTGKGSVSLKELNARPLEVFM---------CSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE---------CBTTTTBSHHHHHHHHHTT
T ss_pred HHHHHhCcccccccccccccccccCceEEEEE---------EECCCCCCHHHHHHHHHHh
Confidence 5666554322 100 011245677 9999999999999888653
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-27 Score=205.92 Aligned_cols=173 Identities=16% Similarity=0.130 Sum_probs=122.6
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
...++.+.+||+|+|++|||||||++++.+. +... ++++.++..+.+...- .++..+.+.||||+|+
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~l~i~Dt~G~ 79 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDI----------SNSSFVNFQIWDFPGQ 79 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEE----------CCTTSCCEEEEECCSS
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeec----------cCCCeeEEEEEECCCC
Confidence 3556778899999999999999999988764 3332 4555555544443210 1145678999999999
Q ss_pred hhhhhhH---HhhccCCcEEEEEEECCCc--ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc-
Q 019959 94 ERYKDCR---SILYSQINGVIFVHDLSQR--RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE- 167 (333)
Q Consensus 94 e~~~~~~---~~~~~~ad~vIlV~D~s~~--~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~- 167 (333)
++|.... ..+++++|++|+|||+++. +++..+..|+.++.... .++|++|||||+|+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-------------~~~piilv~nK~Dl~~~~~ 146 (196)
T 3llu_A 80 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-------------PDMNFEVFIHKVDGLSDDH 146 (196)
T ss_dssp CCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-------------TTCEEEEEEECGGGSCHHH
T ss_pred HHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-------------CCCcEEEEEeccccCchhh
Confidence 9998777 7899999999999999998 66777777888775543 379999999999987532
Q ss_pred ----CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 168 ----GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 168 ----~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+.+. .+.+.++++...-. ..++|+| |||++ .|++++|+.+++.+
T Consensus 147 ~~~~~~~v~----~~~~~~~~~~~~~~---~~~~~~e---------~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 147 KIETQRDIH----QRANDDLADAGLEK---LHLSFYL---------TSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHH----HHHHHHHHHTTCTT---SCEEEEE---------ECTTS-THHHHHHHHHHHHT
T ss_pred hhHHHhHHH----HHHHHHHHHhhhhc---CCcceEE---------EEech-hhHHHHHHHHHHHh
Confidence 12333 25566676632100 0257888 99999 99999999998765
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=197.59 Aligned_cols=167 Identities=25% Similarity=0.451 Sum_probs=142.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|++..+...+.+|++.++....+.++ +..+.+.+||++|++++..+
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-------------g~~~~~~i~Dt~g~~~~~~~ 70 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-------------GKTIKAQIWDTAGQERYRRI 70 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEET-------------TEEEEEEEEECSSGGGTTCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-------------CEEEEEEEEECCCchhhhhh
Confidence 46899999999999999999999999888888999998888888876 67788999999999999888
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
...++..++++|+|||+++..+|+++..|+..+..... .+.|+++|+||+|+.+. +.+. .++
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~i~~v~nK~Dl~~~--~~~~----~~~ 132 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD------------SNIVIMLVGNKSDLRHL--RAVP----TDE 132 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----HHH
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCeEEEEEECcccccc--cCcC----HHH
Confidence 88889999999999999999999999999988876532 36899999999999765 4444 377
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++.++...+ +++++ |||+++.|++++++.+.+.+.+..
T Consensus 133 a~~l~~~~~-------~~~~d---------~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 133 ARAFAEKNN-------LSFIE---------TSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp HHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CeEEE---------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 888998877 45777 999999999999999999887654
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=198.86 Aligned_cols=167 Identities=19% Similarity=0.240 Sum_probs=128.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
....+||+|+|++|||||||+++|++.. +...+.+|++ +....+.++ .+.+.||||+|++++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 80 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS---------------SLSFTVFDMSGQGRY 80 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS---------------SCEEEEEEECCSTTT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC---------------CEEEEEEECCCCHHH
Confidence 4567899999999999999999999887 5667777777 344555543 367999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..++..+|++|+|||++++.+|+.+..|+..+...... ...++|++||+||+|+... +.
T Consensus 81 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~---------~~~~~piilv~nK~Dl~~~----~~---- 143 (190)
T 2h57_A 81 RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDI---------KHRRIPILFFANKMDLRDA----VT---- 143 (190)
T ss_dssp GGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTT---------TTSCCCEEEEEECTTSTTC----CC----
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhh---------ccCCCeEEEEEeCcCcccC----CC----
Confidence 999999999999999999999999999999999998776321 0136899999999999753 12
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+++.+++....+.. ..+++++ |||++|.|++++++.+.+.+
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~---------~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 144 SVKVSQLLCLENIKD--KPWHICA---------SDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp HHHHHHHHTGGGCCS--SCEEEEE---------CBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHhChhhccC--CceEEEE---------ccCCCCcCHHHHHHHHHHHH
Confidence 244444442111110 1256777 99999999999999888765
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=198.22 Aligned_cols=163 Identities=17% Similarity=0.206 Sum_probs=123.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+.+||+|+|++|||||||+++|+++.+. .+.+|++.+ ...+.++ .+.+.+|||+|++++..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 82 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIG---------------NIKFTTFDLGGHIQARR 82 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEET---------------TEEEEEEECCCSGGGTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEEC---------------CEEEEEEECCCCHHHHH
Confidence 34579999999999999999999988874 466777764 4455553 27899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+... ++ .+
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~NK~Dl~~~----~~----~~ 143 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-----------LKDVPFVILGNKIDAPNA----VS----EA 143 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCCEEEEEECTTSTTC----CC----HH
T ss_pred HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-----------hcCCCEEEEEECCCCcCC----CC----HH
Confidence 999999999999999999999999999999999876421 136899999999999752 22 24
Q ss_pred HHHHHHHHcCC-----CCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 179 AARQWVEKQGL-----LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 179 ~~~~~~~~~~~-----~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++.+++..... ......++|+| |||++|.|++++++.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 144 ELRSALGLLNTTGSQRIEGQRPVEVFM---------CSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp HHHHHTTCSSCCC---CCSSCCEEEEE---------CBTTTTBSHHHHHHHHHT
T ss_pred HHHHHhCCccccccccccccceEEEEE---------eECCcCCCHHHHHHHHHh
Confidence 44443322110 00011356777 999999999999988865
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=197.63 Aligned_cols=165 Identities=19% Similarity=0.316 Sum_probs=124.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+ ..+.+|++.. ...+.++ .+.+.+|||+|++++..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 77 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYK---------------NLKLNVWDLGGQTSIRP 77 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEET---------------TEEEEEEEEC----CCT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEEC---------------CEEEEEEECCCCHhHHH
Confidence 5678999999999999999999998877 5566777744 3444443 37899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++..+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.... .
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~----~------ 136 (183)
T 1moz_A 78 YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-----------LQDAALLVFANKQDQPGAL----S------ 136 (183)
T ss_dssp TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-----------TSSCEEEEEEECTTSTTCC----C------
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-----------hCCCeEEEEEECCCCCCCC----C------
Confidence 999999999999999999999999999999988866531 1378999999999997541 1
Q ss_pred HHHHHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
..++.+..+..... ..+++++ |||++|.|++++++.+.+.+.++
T Consensus 137 -~~~i~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 137 -ASEVSKELNLVELKDRSWSIVA---------SSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp -HHHHHHHTTTTTCCSSCEEEEE---------EBGGGTBTHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCcccccCCceEEEE---------ccCCCCcCHHHHHHHHHHHHHhc
Confidence 12233333322111 1246777 99999999999999999887654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=197.94 Aligned_cols=165 Identities=18% Similarity=0.302 Sum_probs=127.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+.. +.+|++.. ...+.++ .+.+.+|||+|++++..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~---------------~~~~~~~Dt~G~~~~~~ 81 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK---------------NISFEVWDLGGQTGVRP 81 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET---------------TEEEEEEEECCSSSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC---------------CEEEEEEECCCCHhHHH
Confidence 356899999999999999999999887753 55676643 3444442 47899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.....
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~~---------- 140 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE-----------LRKSLLLIFANKQDLPDAAS---------- 140 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST-----------TTTCEEEEEEECTTSTTCCC----------
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh-----------cCCCeEEEEEECCCCcCCCC----------
Confidence 988899999999999999999999999999988876532 13789999999999976421
Q ss_pred HHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+++.+..+.... ...++++| |||++|.|++++++.+.+.+.++
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 141 -EAEIAEQLGVSSIMNRTWTIVK---------SSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp -HHHHHHHTTGGGCCSSCEEEEE---------CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHhChhhccCCceEEEE---------ccCCCccCHHHHHHHHHHHHHhc
Confidence 1223333332110 01246777 99999999999999998887654
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-26 Score=210.31 Aligned_cols=167 Identities=20% Similarity=0.279 Sum_probs=140.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|++++..
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 218 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-------------GKPVNLGLWDTAGLEDYDR 218 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEET-------------TEEEEEEEEEECCCGGGTT
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEEC-------------CEEEEEEEEeCCCchhhhH
Confidence 3458999999999999999999999999888888877655 4455554 5778899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE---------- 167 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~---------- 167 (333)
+...+++.+|++|+|||++++.+|+.+. .|+..+..... ++|+++|+||+|+....
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------------~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 285 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-------------NTPIILVGTKLDLRDDKDTIEKLKEKK 285 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-------------TSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-------------CCcEEEEEEchhcccccchhhhccccc
Confidence 9999999999999999999999999986 79999887742 78999999999997531
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.+.+. .+++.++++..++ .+|+| |||++|.|++++|+.+.+.+++
T Consensus 286 ~~~v~----~~~~~~~~~~~~~------~~~~~---------~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 286 LTPIT----YPQGLAMAKEIGA------VKYLE---------CSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp CCCCC----HHHHHHHHHHTTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHHC
T ss_pred ccccc----HHHHHHHHHHcCC------cEEEE---------ecCCCCcCHHHHHHHHHHHHhc
Confidence 13455 3788999998874 26777 9999999999999999887653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-28 Score=211.80 Aligned_cols=166 Identities=20% Similarity=0.293 Sum_probs=133.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....+||+|+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.||||+|++++.
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~Dt~G~~~~~ 92 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-------------GKPVNLGLWDTAGQEDYD 92 (204)
Confidence 35668999999999999999999999888777777776544 3333333 567789999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC--------
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG-------- 168 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~-------- 168 (333)
.++..+++.+|++|+|||++++.+|+.+. .|+..+.... .++|++||+||+|+.....
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-------------~~~piilv~NK~Dl~~~~~~~~~~~~~ 159 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-------------PNTPIILVGTKLDLRDDKDTIEKLKEK 159 (204)
Confidence 99999999999999999999999999986 8988887653 2689999999999975421
Q ss_pred --CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 169 --TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 169 --r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.+. .+++.++++.+++ .+|+| |||++|.|++++++.+.+.+
T Consensus 160 ~~~~v~----~~~~~~~~~~~~~------~~~~~---------vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 160 KLTPIT----YPQGLAMAKEIGA------VKYLE---------CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 1233 2566777777663 26777 99999999999988887654
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-26 Score=190.76 Aligned_cols=153 Identities=11% Similarity=0.064 Sum_probs=115.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh---
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK--- 97 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~--- 97 (333)
.++|+|+|++|||||||+++|++..+...+.++.+.+.....+.++ ...+.+|||+|++++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~~~ 67 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN---------------GEKFKVVDLPGVYSLTANS 67 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET---------------TEEEEEEECCCCSCSSSSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC---------------CcEEEEEECCCcccCCCcc
Confidence 5799999999999999999999887655555665666656666553 3579999999988774
Q ss_pred ---hhHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 98 ---DCRSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 98 ---~~~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
.+...+++ ++|++++|+|+++. +.+..|+.++.+. ++|+++|+||+|+... +.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~~---------------~~p~ilv~nK~Dl~~~--~~~~ 127 (165)
T 2wji_A 68 IDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLMEM---------------GANLLLALNKMDLAKS--LGIE 127 (165)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHHT---------------TCCEEEEEECHHHHHH--TTCC
T ss_pred hhHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHhc---------------CCCEEEEEEchHhccc--cChh
Confidence 44455665 89999999999875 4455688877664 5899999999999754 3333
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+++++++.++ ++|+| |||++|.|++++|+.+.+.+
T Consensus 128 -----~~~~~~~~~~~-------~~~~~---------~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 128 -----IDVDKLEKILG-------VKVVP---------LSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp -----CCHHHHHHHHT-------SCEEE---------CBGGGTBSHHHHHHHHHHHT
T ss_pred -----hHHHHHHHHhC-------CCEEE---------EEcCCCCCHHHHHHHHHHHh
Confidence 23677888877 46788 99999999999999887653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=191.53 Aligned_cols=164 Identities=25% Similarity=0.459 Sum_probs=141.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|++..+...+.+|++.++....+.++ +..+.+.+||++|++++..
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-------------g~~~~~~i~Dt~g~~~~~~ 93 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-------------GKTIKAQIWDTAGLERYRA 93 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECSCCSSSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-------------CEEEEEEEEECCCCcchhh
Confidence 456899999999999999999999999888889999999988888876 6778899999999999988
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
+...+++.++++++|||+++..+|+++..|+..+..... .+.|+++|+||+|+.+. +.+. .+
T Consensus 94 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~i~~v~nK~Dl~~~--~~~~----~~ 155 (191)
T 1oix_A 94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD------------SNIVIMLVGNKSDLRHL--RAVP----TD 155 (191)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CCSC----HH
T ss_pred hhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEECcccccc--cccC----HH
Confidence 888889999999999999999999999999988766432 36899999999999764 3344 37
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.++.++...+ +++++ +||+++.|++++++.+.+.+
T Consensus 156 ~a~~l~~~~~-------~~~ld---------~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 156 EARAFAEKNG-------LSFIE---------TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHh
Confidence 7889998877 45777 99999999999998887754
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=208.80 Aligned_cols=180 Identities=16% Similarity=0.205 Sum_probs=126.2
Q ss_pred CCCCCcceEEEEECCC---------CCCHHHHHHHHHc---CCCCCCCCccc-ceeEEEEEEEeCCCC--CCCCccCCCC
Q 019959 15 GGPPTGQVRVLVVGDS---------GVGKTSLVNLIVK---GSSFSRPSQTI-GCTVGVKHITYGSSG--SSSNSIKGDS 79 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~---------~vGKSSLl~~l~~---~~~~~~~~~t~-~~~~~~~~~~~~~~~--~~~~~i~~~~ 79 (333)
.......+||+|||++ |||||||+++|++ +.+...+.+|+ +.++..+.+.++... .+. .....+
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 91 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEV-SRSLED 91 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEE-C-----
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccc-cccccC
Confidence 3345677999999999 9999999999998 66766676665 566544333210000 000 000023
Q ss_pred CceEEEEEEe-----------------------CCCchhhhhhHHhhcc---------------------CCcEEEEEEE
Q 019959 80 ERDFFVELWD-----------------------ISGHERYKDCRSILYS---------------------QINGVIFVHD 115 (333)
Q Consensus 80 ~~~~~l~i~D-----------------------t~G~e~~~~~~~~~~~---------------------~ad~vIlV~D 115 (333)
+..+.+.||| ++|+++|..++..++. ++|++|+|||
T Consensus 92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D 171 (255)
T 3c5h_A 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171 (255)
T ss_dssp ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence 5678899999 7777778777777777 7999999999
Q ss_pred CCCc--ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCC
Q 019959 116 LSQR--RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS 193 (333)
Q Consensus 116 ~s~~--~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~ 193 (333)
++++ .+|+.+..|+.++..... ..++|++|||||+|+... +. .++++++++...
T Consensus 172 ~t~~~~~s~~~~~~~l~~i~~~~~-----------~~~~piilV~NK~Dl~~~--~~------v~~~~~~~~~~~----- 227 (255)
T 3c5h_A 172 VSRGMNRNFDDQLKFVSNLYNQLA-----------KTKKPIVVVLTKCDEGVE--RY------IRDAHTFALSKK----- 227 (255)
T ss_dssp CBC----CHHHHHHHHHHHHHHHH-----------HTTCCEEEEEECGGGBCH--HH------HHHHHHHHHTSS-----
T ss_pred CCCCchhhHHHHHHHHHHHHHHhc-----------cCCCCEEEEEEccccccc--HH------HHHHHHHHHhcC-----
Confidence 9998 999999999999876510 136899999999999754 22 255677776532
Q ss_pred cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 194 EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 194 ~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.++|+| |||++|.|++++|+.+++.+
T Consensus 228 -~~~~~e---------~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 228 -NLQVVE---------TSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp -SCCEEE---------CBTTTTBSHHHHHHHHHHHH
T ss_pred -CCeEEE---------EECCCCCCHHHHHHHHHHHh
Confidence 256888 99999999999999998765
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-25 Score=186.36 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=122.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
....++|+|+|++|||||||+++|++..+...+.++++.++....+.++ ...+.||||+|++++.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 69 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN---------------DKKITFLDTPGHEAFT 69 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET---------------TEEEEESCCCSSSSSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC---------------CceEEEEECCCCHHHH
Confidence 3456799999999999999999999998887777777777776667664 2468899999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..++..+|++|+|||+++......+. ++..+.. .++|+++|+||+|+.... .
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~l~~~~~---------------~~~p~ilv~nK~Dl~~~~---------~ 124 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQTVE-AINHAKA---------------ANVPIIVAINKMDKPEAN---------P 124 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHHHHH-HHHHHGG---------------GSCCEEEEEETTTSSCSC---------H
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHh---------------CCCCEEEEEECccCCcCC---------H
Confidence 98888899999999999999864433322 2222322 268999999999997642 1
Q ss_pred HHHHHHHHHcCCCCCC--cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSS--EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~--~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++........+..... ..+++++ |||++|.|++++++.+.+.+....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 125 DRVMQELMEYNLVPEEWGGDTIFCK---------LSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHTTTTCCBTTTTSSEEEEE---------CCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCcChhHcCCcccEEE---------EecCCCCCHHHHHHHHHHhhhhhc
Confidence 2333333333321100 1146777 999999999999988888765543
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-25 Score=207.31 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=127.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC--CC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS--SF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
..+||+|+|++|||||||+++|+++. +. ..+.+|++.++.. +.+. ..+.+.||||+|++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~--------------~~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFL--------------GNMTLNLWDCGGQDVF 65 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEET--------------TTEEEEEEEECCSHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeC--------------CceEEEEEECCCcHHH
Confidence 45899999999999999999999773 22 2466677766653 3332 2578999999999998
Q ss_pred -----hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHH---HhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 97 -----KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI---ATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 97 -----~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i---~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
..++..+++++|++|+|||++++.+|+++..|...+ .... +++|++|||||+|+...+.
T Consensus 66 ~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~-------------~~~piilv~NK~Dl~~~~~ 132 (307)
T 3r7w_A 66 MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-------------PDAKIFVLLHKMDLVQLDK 132 (307)
T ss_dssp HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC-------------TTCEEEEEEECGGGSCHHH
T ss_pred hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC-------------CCCeEEEEEecccccchhh
Confidence 677888899999999999999999999997775544 4432 3799999999999987332
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+........++++++++.+|+. .++|+| |||++ .++.++|..+++.+
T Consensus 133 r~~~~~v~~~~~~~~~~~~g~~----~~~~~~---------tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 133 REELFQIMMKNLSETSSEFGFP----NLIGFP---------TSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCC----SCEEEE---------CCTTS-SHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHcCCC----CeEEEE---------eeecC-ChHHHHHHHHHHHH
Confidence 4311111137788999988852 257888 99999 78888888777543
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-25 Score=208.25 Aligned_cols=163 Identities=20% Similarity=0.315 Sum_probs=122.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+... .+|++..+. .+.. ..+.+.||||+|+++|..
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~---------------~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY---------------KNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEE---------------TTEEEEEEECC-----CC
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEec---------------CcEEEEEEECCCCHhHHH
Confidence 3567999999999999999999998887543 356665543 3333 357899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++.+|+.+..|+..+..... ..++|+|||+||+|+....
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilV~NK~Dl~~~~----------- 282 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-----------LRDAVLLVFANKQDLPNAM----------- 282 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCC-----------
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-----------cCCCeEEEEEECccCCccc-----------
Confidence 999999999999999999999999999888888765531 1378999999999998652
Q ss_pred HHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
...++...++.... ...++|++ |||++|.|++++|+.|++.+.
T Consensus 283 ~~~~i~~~~~~~~~~~~~~~~~~---------vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 283 NAAEITDKLGLHSLRHRNWYIQA---------TCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp CHHHHHHHHTCTTCCSSCEEEEE---------CBTTTTBTHHHHHHHHHHHHT
T ss_pred CHHHHHHHhchhhhhcCCCEEEE---------EECCCCcCHHHHHHHHHHHHH
Confidence 13344555554221 12356777 999999999999999988764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-25 Score=188.11 Aligned_cols=159 Identities=11% Similarity=0.067 Sum_probs=124.0
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
+++...+||+|+|++|||||||+++|++..+.....++++.+.....+.++ .+.+.+|||+|+++
T Consensus 2 ~~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 66 (188)
T 2wjg_A 2 GSHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN---------------GEKFKVVDLPGVYS 66 (188)
T ss_dssp CCCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET---------------TEEEEEEECCCCSC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC---------------CcEEEEEECCCcCc
Confidence 455678999999999999999999999876655555666666666666653 36799999999887
Q ss_pred hh------hhHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 96 YK------DCRSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 96 ~~------~~~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
+. .+...++. .+|++++|+|+++ ++.+..|+.++... ++|+++|+||+|+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~---------------~~piilv~nK~Dl~~~- 127 (188)
T 2wjg_A 67 LTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEM---------------GANLLLALNKMDLAKS- 127 (188)
T ss_dssp CSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT---------------TCCEEEEEECHHHHHH-
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHhc---------------CCCEEEEEEhhhcccc-
Confidence 74 44555664 5999999999975 66777888888664 5899999999999754
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+.+. +.++++++.++ +++++ |||++|.|++++++.+.+.+.
T Consensus 128 -~~~~-----~~~~~~~~~~~-------~~~~~---------~Sa~~~~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 128 -LGIE-----IDVDKLEKILG-------VKVVP---------LSAAKKMGIEELKKAISIAVK 168 (188)
T ss_dssp -TTCC-----CCHHHHHHHHT-------SCEEE---------CBGGGTBSHHHHHHHHHHHHT
T ss_pred -ccch-----HHHHHHHHHhC-------CCeEE---------EEecCCCCHHHHHHHHHHHHH
Confidence 2333 34677888877 46778 999999999999988877653
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=189.70 Aligned_cols=123 Identities=21% Similarity=0.208 Sum_probs=91.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++ +.++.. +.+++ ...+.+.||||+|++++..
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~------------~~~~~~~i~Dt~G~~~~~~ 69 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNN------------NRGNSLTLIDLPGHESLRF 69 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSS------------TTCCEEEEEECCCCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecC------------CCccEEEEEECCCChhHHH
Confidence 34679999999999999999999999887766544 444443 44431 2368899999999999998
Q ss_pred -hHHhhccCCcEEEEEEECCCcc-cHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 99 -CRSILYSQINGVIFVHDLSQRR-TKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 99 -~~~~~~~~ad~vIlV~D~s~~~-S~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
++..+++.+|++|+|||+++.. ++..+.. |...+..... ...++|++||+||+|+...
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 70 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA----------LKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT----------STTCCEEEEEEECTTSTTC
T ss_pred HHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhh----------cccCCCEEEEEECCCCCCc
Confidence 7888999999999999999854 4555544 4444433110 0136899999999999865
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-26 Score=211.79 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=115.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh-
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFS---RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD- 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~- 98 (333)
||+++|+.|||||||++++.++.+.. ...+|+|.++.. + + ..++++||||+||++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~--------------~~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S--------------TLIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C--------------SSSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c--------------cEEEEEEEECCCchhccch
Confidence 79999999999999999988664432 356778877642 2 2 236799999999999974
Q ss_pred --hHHhhccCCcEEEEEEECCCc--ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC-----C
Q 019959 99 --CRSILYSQINGVIFVHDLSQR--RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG-----T 169 (333)
Q Consensus 99 --~~~~~~~~ad~vIlV~D~s~~--~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~-----r 169 (333)
.+..||++++++|+|||++++ +++..+..|+.++.... +++|++|||||+||..++. |
T Consensus 63 ~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-------------~~ipillvgNK~DL~~~~~R~~~~R 129 (331)
T 3r7w_B 63 SYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-------------PSINIEVLIHKVDGLSEDFKVDAQR 129 (331)
T ss_dssp SHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-------------TTCEEEEECCCCCSSCSHHHHHHHH
T ss_pred hhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-------------CCCcEEEEEECcccCchhhhhhHHH
Confidence 468899999999999999998 22333344455555443 3799999999999986532 2
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.|.. ++++++++.. +. ..+++|+| |||++ .||.++|..+++.++.
T Consensus 130 ~V~~----~~~~~la~~~-~~--~~~i~f~e---------TSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 130 DIMQ----RTGEELLELG-LD--GVQVSFYL---------TSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp HHHH----HHHHTTSSSS-CS--CCCEEEEC---------CCSSS-SHHHHHHHHHHTTSST
T ss_pred HhhH----HHHHHHHhhc-cc--ccCceEEE---------eccCC-CcHHHHHHHHHHHHHh
Confidence 3332 4555665531 00 01367888 99998 5888888888876543
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=185.92 Aligned_cols=169 Identities=15% Similarity=0.102 Sum_probs=118.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-----
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH----- 93 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~----- 93 (333)
...+||+|+|++|||||||+++|++..+.....+....++....+.+ ..+.+.||||+|+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~---------------~~~~~~l~DtpG~~~~~~ 91 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH---------------KLNKYQIIDTPGLLDRAF 91 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE---------------TTEEEEEEECTTTTTSCG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec---------------CCCeEEEEECCCCcCccc
Confidence 56799999999999999999999988764332222233333333333 2467999999998
Q ss_pred -hh----hhhhHHhhccCCcEEEEEEECCCcccHH--HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 94 -ER----YKDCRSILYSQINGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 94 -e~----~~~~~~~~~~~ad~vIlV~D~s~~~S~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
++ +..+ ..++..+|++|+|||++++.+|. ....|+..+.... .++|+++|+||+|+...
T Consensus 92 ~~~~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-------------~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 92 ENRNTIEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-------------SNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp GGCCHHHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--------------CCCEEEEEECGGGCC-
T ss_pred chhhhHHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-------------cCCcEEEEEeCcccCCc
Confidence 44 3333 33577899999999999998875 2346777776542 26899999999999865
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
+.+.. +..+.+.+++...+. .++|++ |||++|.|++++++.+.+.+.+..
T Consensus 158 --~~~~~-~~~~~~~~~~~~~~~-----~~~~~~---------~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 158 --DSLSI-DNKLLIKQILDNVKN-----PIKFSS---------FSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp ---CCCH-HHHHHHHHHHHHCCS-----CEEEEE---------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred --hhhHH-HHHHHHHHHHHhcCC-----CceEEE---------EecccCCCHHHHHHHHHHHHHHHH
Confidence 34432 112356667766651 146777 999999999999999999887654
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=179.39 Aligned_cols=163 Identities=21% Similarity=0.269 Sum_probs=111.9
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC---
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG--- 92 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G--- 92 (333)
.+....++|+|+|++|||||||+++|++..+.....++.+.+.......++ + .+.||||+|
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------~---~~~l~Dt~G~~~ 81 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-------------D---ELHFVDVPGYGF 81 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-------------T---TEEEEECCCBCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-------------C---cEEEEECCCCCc
Confidence 345567899999999999999999999988766666666666655555443 1 389999999
Q ss_pred -------chhhhhhHHhhccCC---cEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 93 -------HERYKDCRSILYSQI---NGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 93 -------~e~~~~~~~~~~~~a---d~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
++.+..+...++..+ |++|+|+|+++..++.... ++..+... ++|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~---------------~~p~i~v~nK~D 145 (195)
T 1svi_A 82 AKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKYY---------------GIPVIVIATKAD 145 (195)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHHT---------------TCCEEEEEECGG
T ss_pred cccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc---------------CCCEEEEEECcc
Confidence 788888888888777 9999999999998887753 22223222 689999999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.... .+. ....++.+.++... .+++++ +||++|.|++++++.+.+.+
T Consensus 146 l~~~~--~~~-----~~~~~~~~~~~~~~---~~~~~~---------~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 146 KIPKG--KWD-----KHAKVVRQTLNIDP---EDELIL---------FSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp GSCGG--GHH-----HHHHHHHHHHTCCT---TSEEEE---------CCTTTCTTHHHHHHHHHHHH
T ss_pred cCChH--HHH-----HHHHHHHHHHcccC---CCceEE---------EEccCCCCHHHHHHHHHHHh
Confidence 98652 221 22334444344211 256777 99999999999999887754
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-23 Score=178.11 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=118.2
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC-
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG- 92 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G- 92 (333)
...+....+||+|+|++|||||||+++|++..+ ....++.+.+........+ ..+.+|||+|
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~----------------~~~~i~Dt~G~ 78 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN----------------SKYYFVDLPGY 78 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET----------------TTEEEEECCCB
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC----------------CcEEEEECCCC
Confidence 445567788999999999999999999998873 3444455554444443332 1378999999
Q ss_pred ---------chhhhhhHHhhccCC---cEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEe
Q 019959 93 ---------HERYKDCRSILYSQI---NGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 158 (333)
Q Consensus 93 ---------~e~~~~~~~~~~~~a---d~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVg 158 (333)
++.+..+...+++.+ |++++|+|+++..+... +..|+.. . ++|+++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~---------------~~p~i~v~ 140 (195)
T 3pqc_A 79 GYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L---------------NIPFTIVL 140 (195)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T---------------TCCEEEEE
T ss_pred ccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c---------------CCCEEEEE
Confidence 777888888877766 99999999988755443 3344443 2 58999999
Q ss_pred eCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 159 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 159 NK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
||+|+.....+.+. .+++++++...+. +++++ |||++|.|++++++.+.+.+.
T Consensus 141 nK~Dl~~~~~~~~~----~~~~~~~~~~~~~------~~~~~---------~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 141 TKMDKVKMSERAKK----LEEHRKVFSKYGE------YTIIP---------TSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp ECGGGSCGGGHHHH----HHHHHHHHHSSCC------SCEEE---------CCTTTCTTHHHHHHHHHHHHC
T ss_pred EChhcCChHHHHHH----HHHHHHHHhhcCC------CceEE---------EecCCCCCHHHHHHHHHHHhh
Confidence 99999865323222 3556666655442 56777 999999999999999887653
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-24 Score=214.38 Aligned_cols=171 Identities=17% Similarity=0.245 Sum_probs=121.5
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCC-CCCceEEEEEEeCCCchh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKG-DSERDFFVELWDISGHER 95 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~i~Dt~G~e~ 95 (333)
.+...+||+|||++|||||||+++|++..+...+.+|+|.++..+..... ..+.. .++..+.+.||||+|++.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~------~~v~~~~~~~~~~~~i~Dt~G~e~ 110 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNI------KGLENDDELKECLFHFWDFGGQEI 110 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGS------GGGTTCSTTTTCEEEEECCCSCCT
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccc------cceeecCCCceEEEEEEECCcHHH
Confidence 46778999999999999999999999999988888999988765532100 00000 224578899999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+..+...+++++|++|+|||+++. +.+..|+.++.... .++|+||||||+|+... +.+..
T Consensus 111 ~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-------------~~~pvilV~NK~Dl~~~--~~v~~-- 170 (535)
T 3dpu_A 111 MHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-------------GKSPVIVVMNKIDENPS--YNIEQ-- 170 (535)
T ss_dssp TTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-------------SSCCEEEEECCTTTCTT--CCCCH--
T ss_pred HHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-------------CCCCEEEEEECCCcccc--cccCH--
Confidence 999999999999999999999865 55678999998874 26899999999999865 44542
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.+++++...+ +++++ |||++|.|++++++.+.+.+..
T Consensus 171 --~~~~~~~~~~~-------~~~~~---------vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 171 --KKINERFPAIE-------NRFHR---------ISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp --HHHHHHCGGGT-------TCEEE---------CCC-----CTTHHHHHHHHHTC
T ss_pred --HHHHHHHHhcC-------CceEE---------EecCcccCHHHHHHHHHHHHhc
Confidence 66666666665 46888 9999999999999888876644
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=173.58 Aligned_cols=150 Identities=18% Similarity=0.123 Sum_probs=104.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----- 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----- 95 (333)
.||+|+|++|||||||+++|++..+. ....++.+.+.....+.++ ...+.||||+|++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~~~~ 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD---------------RGRFLLVDTGGLWSGDKWE 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET---------------TEEEEEEECGGGCSSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC---------------CceEEEEECCCCCCccchH
Confidence 58999999999999999999988643 2333333445555555553 24689999999876
Q ss_pred --hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 96 --YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 96 --~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+......++..+|++|+|||+++..+... .|+..+... .++|+++|+||+|+....
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--------------~~~p~ilv~nK~Dl~~~~------ 124 (161)
T 2dyk_A 67 KKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--------------KGKPVILVATKVDDPKHE------ 124 (161)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--------------HTCCEEEEEECCCSGGGG------
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--------------cCCCEEEEEECcccccch------
Confidence 45556677899999999999999765433 222222222 168999999999997641
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+++.+++ ++++ .+|+| |||++|.|++++++.+++.
T Consensus 125 ----~~~~~~~-~~~~------~~~~~---------~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 125 ----LYLGPLY-GLGF------GDPIP---------TSSEHARGLEELLEAIWER 159 (161)
T ss_dssp ----GGCGGGG-GGSS------CSCEE---------CBTTTTBSHHHHHHHHHHH
T ss_pred ----HhHHHHH-hCCC------CCeEE---------EecccCCChHHHHHHHHHh
Confidence 2233444 4453 25777 9999999999999988765
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.3e-24 Score=180.78 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=122.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC---------
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG--------- 92 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G--------- 92 (333)
+||+|+|++|||||||+++|++..+...+.++++.+ ...+.+. .+.+|||+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~-----------------~~~l~Dt~G~~~~~~~~~ 62 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK-----------------NHKIIDMPGFGFMMGLPK 62 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET-----------------TEEEEECCCBSCCTTSCH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC-----------------CEEEEECCCccccccCCH
Confidence 699999999999999999999998877666655433 3333332 389999999
Q ss_pred --chhhhhhHHhhccC-CcEEEEEEECCCcccHHHH-HHHHHH--------HHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 93 --HERYKDCRSILYSQ-INGVIFVHDLSQRRTKTSL-QKWAVE--------IATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 93 --~e~~~~~~~~~~~~-ad~vIlV~D~s~~~S~~~l-~~~~~~--------i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
++.+..+...+++. ++++++||++.+..++.++ ..|... +..... ..++|+++|+||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piilv~nK 131 (190)
T 2cxx_A 63 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR-----------ELDIPTIVAVNK 131 (190)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH-----------HTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHH-----------hcCCceEEEeeh
Confidence 78888888888887 8988888998888899887 667652 211110 126899999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+|+.... .+.++++++.+++.......+++| |||++|.|++++++.+.+.+.+.
T Consensus 132 ~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---------~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 132 LDKIKNV---------QEVINFLAEKFEVPLSEIDKVFIP---------ISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp GGGCSCH---------HHHHHHHHHHHTCCGGGHHHHEEE---------CCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HhccCcH---------HHHHHHHHHHhhhhhhccCCcEEE---------EecCCCCCHHHHHHHHHHhcchh
Confidence 9998652 267888999988621000124577 99999999999999999887653
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-24 Score=182.85 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=110.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh-
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD- 98 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~- 98 (333)
.+||+|+|++|||||||+++|++..+. ....++.+.++....+.++ + ..+.+|||+|++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-------------~--~~~~l~Dt~G~~~~~~~ 68 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID-------------G--MPLHIIDTAGLREASDE 68 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET-------------T--EEEEEEECCCCSCCSSH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC-------------C--eEEEEEECCCcccchhH
Confidence 479999999999999999999987642 2333444556666777664 2 4589999999865321
Q ss_pred -----h--HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 99 -----C--RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 99 -----~--~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
+ ...+++.+|++|+|||+++..+++. ..|+..+..... .++|+++|+||+|+.... ..
T Consensus 69 ~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~------------~~~p~ilv~NK~Dl~~~~-~~- 133 (172)
T 2gj8_A 69 VERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP------------AKLPITVVRNKADITGET-LG- 133 (172)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC------------TTCCEEEEEECHHHHCCC-CE-
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc------------cCCCEEEEEECccCCcch-hh-
Confidence 1 1235789999999999999998874 478877776532 368999999999996431 10
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++.. .++|+| |||++|.|++++++.+.+.+
T Consensus 134 -----------~~~~~-------~~~~~~---------~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 134 -----------MSEVN-------GHALIR---------LSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp -----------EEEET-------TEEEEE---------CCTTTCTTHHHHHHHHHHHC
T ss_pred -----------hhhcc-------CCceEE---------EeCCCCCCHHHHHHHHHHHh
Confidence 01111 246777 99999999999998887654
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-23 Score=189.42 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=116.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+|+|++..+.....++++.+.....+.. ..+.+.||||||+..+..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~---------------~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY---------------KGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE---------------TTEEEEEEECCCCSSCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE---------------CCeEEEEEECCCcCccCC
Confidence 45689999999999999999999987765444444444444444443 247899999999877653
Q ss_pred ------hHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 99 ------CRSILY--SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 99 ------~~~~~~--~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+...++ ..+|++|+|+|+++.++.. .|..++.+. ++|+++|+||+|+... +.
T Consensus 68 ~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~---------------~~pvilv~NK~Dl~~~--~~ 127 (258)
T 3a1s_A 68 SSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILEM---------------EKKVILAMTAIDEAKK--TG 127 (258)
T ss_dssp SSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHTT---------------TCCEEEEEECHHHHHH--TT
T ss_pred CCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHhc---------------CCCEEEEEECcCCCCc--cc
Confidence 334455 5899999999999876543 466666654 5899999999999765 23
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+. .++..+++.+| +|+++ +||++|.|++++++.+.+.+
T Consensus 128 i~-----~~~~~l~~~lg-------~~vi~---------~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 128 MK-----IDRYELQKHLG-------IPVVF---------TSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CC-----BCHHHHHHHHC-------SCEEE---------CCTTTCTTHHHHHHHHHHHH
T ss_pred hH-----HHHHHHHHHcC-------CCEEE---------EEeeCCcCHHHHHHHHHHHh
Confidence 33 23677888888 57888 99999999999999887754
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-23 Score=187.95 Aligned_cols=151 Identities=18% Similarity=0.169 Sum_probs=112.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh---
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK--- 97 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~--- 97 (333)
.+||+|+|++|||||||+|+|++..+.....+ |.++..+...+. . .+.+.||||||++.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~-------------~-~~~l~l~DtpG~~~~~~~~ 66 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVK-------------K-NKDLEIQDLPGIYSMSPYS 66 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECT-------------T-CTTEEEEECCCCSCSSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEe-------------c-CCeEEEEECCCcCccCCCC
Confidence 57999999999999999999998764444444 333434444443 2 3459999999988775
Q ss_pred ---hhHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 98 ---DCRSILYS--QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 98 ---~~~~~~~~--~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
.+...++. .+|++|+|||+++.+++ ..|..++.+. ++|+++|+||+|+... +.+.
T Consensus 67 ~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~~---------------~~p~ilv~NK~Dl~~~--~~~~ 126 (272)
T 3b1v_A 67 PEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIET---------------GIPVTIALNMIDVLDG--QGKK 126 (272)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHHT---------------CSCEEEEEECHHHHHH--TTCC
T ss_pred hHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHhc---------------CCCEEEEEEChhhCCc--CCcH
Confidence 45556665 69999999999986543 4566666654 6899999999999754 2222
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
..+..+++.+| +|+++ |||++|.|++++++.+.+.
T Consensus 127 -----~~~~~l~~~lg-------~~vi~---------~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 127 -----INVDKLSYHLG-------VPVVA---------TSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp -----CCHHHHHHHHT-------SCEEE---------CBTTTTBSHHHHHHHHHHS
T ss_pred -----HHHHHHHHHcC-------CCEEE---------EEccCCCCHHHHHHHHHHH
Confidence 23677888887 57888 9999999999998888653
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-23 Score=186.62 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=115.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh----
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD---- 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~---- 98 (333)
+|+|+|++|||||||+|+|++..+.....++++.+.....+.++ ...+.||||||+..+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~---------------~~~~~lvDtpG~~~~~~~~~~ 67 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG---------------EHLIEITDLPGVYSLVANAEG 67 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET---------------TEEEEEEECCCCSSCC-----
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC---------------CeEEEEEeCCCcccccccccC
Confidence 89999999999999999999887655556666777777777664 24799999999877653
Q ss_pred ------hHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 99 ------CRSILY--SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 99 ------~~~~~~--~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+...++ ..+|++|+|+|+++.+++..+..|+. +. ++|+++|+||+|+....+..
T Consensus 68 ~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~---~~---------------~~pvilv~NK~Dl~~~~~~~ 129 (256)
T 3iby_A 68 ISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLF---EL---------------GKPVVVALNMMDIAEHRGIS 129 (256)
T ss_dssp -CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHT---TS---------------CSCEEEEEECHHHHHHTTCE
T ss_pred CCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHH---Hc---------------CCCEEEEEEChhcCCcCCcH
Confidence 455566 89999999999999766655544433 32 68999999999997653222
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
.....+++.+| +|+++ +||++|.|++++++.+.+.
T Consensus 130 -------~~~~~l~~~lg-------~~vi~---------~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 130 -------IDTEKLESLLG-------CSVIP---------IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp -------ECHHHHHHHHC-------SCEEE---------CBGGGTBSHHHHHHHHHTC
T ss_pred -------HHHHHHHHHcC-------CCEEE---------EECCCCCCHHHHHHHHHhh
Confidence 22456777777 57888 9999999999988888653
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-23 Score=187.95 Aligned_cols=152 Identities=17% Similarity=0.167 Sum_probs=111.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh-
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD- 98 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~- 98 (333)
..++|+|+|.+|||||||+|+|++..+.....++.+.+.....+.+. ...+.||||||+..+..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~---------------~~~~~liDtpG~~~~~~~ 66 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT---------------DHQVTLVDLPGTYSLTTI 66 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS---------------SCEEEEEECCCCSCSCC-
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC---------------CCceEEEECcCCCccccc
Confidence 46899999999999999999999887655556666666666666654 24588999999877652
Q ss_pred ---------hHHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 99 ---------CRSIL--YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 99 ---------~~~~~--~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
....+ +..+|++|+|+|+++.+++..+. ..+.+. ++|+++|+||+|+....
T Consensus 67 ~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~---~~l~~~---------------~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 67 SSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLT---LQLLEL---------------GIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp ---CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHH---HHHHHH---------------TCCEEEEEECHHHHHHT
T ss_pred cccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHH---HHHHhc---------------CCCEEEEEECccchhhh
Confidence 22233 36999999999999866555444 444444 58999999999997652
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.+. .....+++.+| +|+++ +||++|.|++++++.+.+
T Consensus 129 --~~~-----~~~~~l~~~lg-------~~~i~---------~SA~~g~gi~el~~~i~~ 165 (274)
T 3i8s_A 129 --NIR-----IEIDALSARLG-------CPVIP---------LVSTRGRGIEALKLAIDR 165 (274)
T ss_dssp --TEE-----ECHHHHHHHHT-------SCEEE---------CCCGGGHHHHHHHHHHHT
T ss_pred --hHH-----HHHHHHHHhcC-------CCEEE---------EEcCCCCCHHHHHHHHHH
Confidence 221 23567777787 57888 999999777776665543
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=181.26 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=121.0
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
.++...-.|+|+|.+|||||||+|+|++..+.. ...+..+.+........ +..+.+.||||||+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~--------------~~~~~i~lvDTPG~~ 70 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI--------------PNEAQIIFLDTPGIY 70 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--------------TTTEEEEEEECCCCC
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec--------------CCCCeEEEEECcCCC
Confidence 345667799999999999999999999887642 22222222222222222 226789999999974
Q ss_pred h----------hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 95 R----------YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 95 ~----------~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
. +......++..+|++|+|+|+++..++.....|+..+... ++|+++|+||+|+.
T Consensus 71 ~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---------------~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 71 EPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---------------NKPVIVVINKIDKI 135 (308)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---------------CCCEEEEEECGGGS
T ss_pred ccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---------------CCCEEEEEECccCC
Confidence 4 3356667889999999999999999999988888888764 68999999999997
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.. +... .+....+++.++. ..++++ +||++|.|++++++.+.+.+
T Consensus 136 ~~--~~~~----~~~~~~l~~~~~~-----~~~i~~---------vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 136 GP--AKNV----LPLIDEIHKKHPE-----LTEIVP---------ISALKGANLDELVKTILKYL 180 (308)
T ss_dssp SS--GGGG----HHHHHHHHHHCTT-----CCCEEE---------CBTTTTBSHHHHHHHHHHHS
T ss_pred CC--HHHH----HHHHHHHHHhccC-----CCeEEE---------EeCCCCCCHHHHHHHHHHhC
Confidence 32 1222 3667777777752 145777 99999999999988887654
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-22 Score=175.04 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=112.0
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC---
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG--- 92 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G--- 92 (333)
.+....++|+|+|.+|||||||+++|++..+......+.+.+.......+.. .....+.||||+|
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP------------AAEPVAHLVDLPGYGY 91 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC------------TTSCSEEEEECCCCCS
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC------------CCCCcEEEEcCCCCCc
Confidence 4455678999999999999999999998863222223333333333333321 2235689999999
Q ss_pred -------chhhhhhHHhhccC---CcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 93 -------HERYKDCRSILYSQ---INGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 93 -------~e~~~~~~~~~~~~---ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
++.+..+...++.. +|++|+|+|+++..+... ..|+..+... ++|+++|+||+|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~~---------------~~p~i~v~nK~D 155 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAPT---------------GKPIHSLLTKCD 155 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGGG---------------CCCEEEEEECGG
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHhc---------------CCCEEEEEeccc
Confidence 45566666666665 888999999998655332 3455555543 689999999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.... .+. ...+...+....+.-......+++++ +||++|.|++++++.+.+.+..
T Consensus 156 l~~~~--~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~---------~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 156 KLTRQ--ESI--NALRATQKSLDAYRDAGYAGKLTVQL---------FSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp GSCHH--HHH--HHHHHHHHHHHHHHHHTCCSCEEEEE---------EBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCChh--hHH--HHHHHHHHHHHhhhhcccCCCCeEEE---------eecCCCcCHHHHHHHHHHhcCc
Confidence 98642 110 00122222222220000001256777 9999999999999998876643
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-22 Score=177.10 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=106.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCC---CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFS---RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
....++|+|+|++|||||||+++|++..+.. .+.++++.++ ..+.+.+|||+|++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~l~Dt~G~~ 66 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------------------DGSGVTLVDFPGHV 66 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----------------------GGSSCEEEECCCCG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----------------------eCceEEEEECCCcH
Confidence 3456799999999999999999999887643 2444443322 23458999999999
Q ss_pred hhhhhHHhhccC----CcEEEEEEECC-CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 95 RYKDCRSILYSQ----INGVIFVHDLS-QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 95 ~~~~~~~~~~~~----ad~vIlV~D~s-~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
++...+..+++. +|++|+|||++ ++.+|..+..|+.++....... ...++|+++|+||+|+......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 67 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS--------CENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp GGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHH--------STTCCCEEEEEECTTSTTCCCH
T ss_pred HHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhccccc--------ccCCCCEEEEEEchHhcccCCH
Confidence 999888888877 89999999999 8899999999988886542100 0137899999999999865321
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 217 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~ 217 (333)
......+.+++..++...+ ++|+| +||++|.+
T Consensus 139 ~~~~~~l~~~~~~~~~~~~-------~~~~~---------~Sa~~~~~ 170 (218)
T 1nrj_B 139 SKIKDALESEIQKVIERRK-------KSLNE---------VERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHh-------ccccc---------cccccccc
Confidence 1111122355677777665 46888 99999854
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=178.31 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=119.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh-
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD- 98 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~- 98 (333)
+.++|+|+|++|||||||+++|++..+.....++++.+.....+.+. ...+.||||||+..+..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~l~DtpG~~~~~~~ 66 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR---------------EKEFLVVDLPGIYSLTAH 66 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET---------------TEEEEEEECCCCSCCCSS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC---------------CceEEEEeCCCccccccC
Confidence 35799999999999999999999887755566666777776676664 34599999999877655
Q ss_pred -----hHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 99 -----CRSILY--SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 99 -----~~~~~~--~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
....++ .++|++|+|+|+++.+ ....|..++.... .+|+++|+||+|+.... .+
T Consensus 67 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--------------~~p~ilv~NK~Dl~~~~--~~ 127 (271)
T 3k53_A 67 SIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEME--------------VKNIILVLNKFDLLKKK--GA 127 (271)
T ss_dssp CHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--------------CCSEEEEEECHHHHHHH--TC
T ss_pred CHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhcC--------------CCCEEEEEEChhcCccc--cc
Confidence 455555 6899999999999853 3345555665552 38999999999987542 22
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
. .....+++.+| +|+++ +||++|.|++++++.+.+.+
T Consensus 128 ~-----~~~~~l~~~lg-------~~~~~---------~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 128 K-----IDIKKMRKELG-------VPVIP---------TNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp C-----CCHHHHHHHHS-------SCEEE---------CBGGGTBTHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHcC-------CcEEE---------EEeCCCCCHHHHHHHHHHHH
Confidence 2 22667788887 57888 99999999999998887764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.7e-22 Score=191.39 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=116.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc----
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH---- 93 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~---- 93 (333)
...+||+|+|++|||||||+|+|++..+. ....++.+.+.....+.++ ...+.||||+|+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~---------------~~~~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN---------------QQEFVIVDTAGMRKKG 237 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEET---------------TEEEEETTHHHHTCBT
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEEC---------------CeEEEEEECCCcCcCc
Confidence 35689999999999999999999988653 3334444555555566654 235899999997
Q ss_pred ------hhhhhhHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 94 ------ERYKDCRS-ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 94 ------e~~~~~~~-~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
+.|..++. .+++.+|++|+|||+++..+++.+ .|+..+... +.|+++|+||+|+.+.
T Consensus 238 ~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~---------------~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 238 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA---------------GKAVVIVVNKWDAVDK 301 (436)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---------------TCEEEEEEECGGGSCC
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc---------------CCcEEEEEECccCCCc
Confidence 66766654 378899999999999999998886 577777654 5899999999999865
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.+.. .+..+++.+.+... ..+|+++ +||++|.|++++++.+.+.+..
T Consensus 302 --~~~~~---~~~~~~~~~~l~~~---~~~~~~~---------~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 302 --DESTM---KEFEENIRDHFQFL---DYAPILF---------MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp --CTTHH---HHHHHHHHHHCGGG---TTSCEEE---------CCTTTCTTGGGHHHHHHHHHHH
T ss_pred --chHHH---HHHHHHHHHhcccC---CCCCEEE---------EecccCCCHHHHHHHHHHHHHH
Confidence 22221 12223333443321 1357777 9999999999999998877654
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=171.73 Aligned_cols=155 Identities=21% Similarity=0.203 Sum_probs=104.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
.+..+|+|+|.+|||||||+|+|++..+.. ...+..+.+.....+. .....+.||||||..+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~---------------~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT---------------EGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE---------------ETTEEEEEEECCCCCCCC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE---------------eCCcEEEEecCccccchh
Confidence 345689999999999999999999887642 2222112222122222 2357899999999765
Q ss_pred ------hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHH-HHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 96 ------YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWA-VEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 96 ------~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~-~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
+......+++.+|++|+|||+++..+... .|+ ..+.... .++|+++|+||+|+....
T Consensus 70 ~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~-------------~~~p~ilV~NK~Dl~~~~- 133 (301)
T 1wf3_A 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLV-------------GKVPILLVGNKLDAAKYP- 133 (301)
T ss_dssp SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT-------------TTSCEEEEEECGGGCSSH-
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhc-------------CCCCEEEEEECcccCCch-
Confidence 55566678999999999999998866553 454 4454432 268999999999997541
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.....+++.+ ..+ .++++ +||++|.|++++++.+.+
T Consensus 134 ---------~~~~~~~~~~--~~~---~~~~~---------iSA~~g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 134 ---------EEAMKAYHEL--LPE---AEPRM---------LSALDERQVAELKADLLA 169 (301)
T ss_dssp ---------HHHHHHHHHT--STT---SEEEE---------CCTTCHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHh--cCc---CcEEE---------EeCCCCCCHHHHHHHHHH
Confidence 1023333333 111 34666 999999777777766654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-20 Score=173.00 Aligned_cols=161 Identities=18% Similarity=0.182 Sum_probs=117.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh-
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK- 97 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~- 97 (333)
...++|+|+|.+|||||||+++|++..+.....+..+.+.....+.. ....+.+|||+|...+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~---------------~~~~~~l~Dt~G~~~~~~ 229 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED---------------GYFRYQIIDTPGLLDRPI 229 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE---------------TTEEEEEEECTTTSSSCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe---------------cCceEEEEeCCCccccch
Confidence 45679999999999999999999987643222222222333333332 24679999999964321
Q ss_pred --------hhHHhhccCCcEEEEEEECCCcc--cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 98 --------DCRSILYSQINGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 98 --------~~~~~~~~~ad~vIlV~D~s~~~--S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
.....+...+|++|+|+|+++.. +++....|+.++..... +.|+++|+||+|+....
T Consensus 230 ~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-------------~~piilV~NK~Dl~~~~ 296 (357)
T 2e87_A 230 SERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-------------DLPFLVVINKIDVADEE 296 (357)
T ss_dssp TTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-------------TSCEEEEECCTTTCCHH
T ss_pred hhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-------------CCCEEEEEECcccCChH
Confidence 12223455799999999999887 78888899999887632 68999999999998642
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
. .+++.+++...+ +++++ |||++|.|++++++.+.+.+..
T Consensus 297 --~------~~~~~~~~~~~~-------~~~~~---------iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 297 --N------IKRLEKFVKEKG-------LNPIK---------ISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp --H------HHHHHHHHHHTT-------CCCEE---------CBTTTTBTHHHHHHHHHHHHHH
T ss_pred --H------HHHHHHHHHhcC-------CCeEE---------EeCCCCcCHHHHHHHHHHHHHH
Confidence 1 244556666554 56777 9999999999999999988755
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=184.04 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=96.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
.+||+|+|.+|||||||+|+|++... .....++.+.++....+.++ .+.+.||||+|++++...
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~---------------g~~l~liDT~G~~~~~~~ 297 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD---------------KTMFRLTDTAGLREAGEE 297 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEET---------------TEEEEEEC----------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC---------------CeEEEEEECCCCCcchhH
Confidence 47999999999999999999998753 33444455666666666664 367999999998776543
Q ss_pred H--------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 100 R--------SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 100 ~--------~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
. ..++..+|++|+|||++++.+++++..+...+... .++|+++|+||+|+.... .
T Consensus 298 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--------------~~~piIvV~NK~Dl~~~~--~- 360 (476)
T 3gee_A 298 IEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--------------PAAKFLTVANKLDRAANA--D- 360 (476)
T ss_dssp ----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--------------TTSEEEEEEECTTSCTTT--H-
T ss_pred HHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--------------CCCCEEEEEECcCCCCcc--c-
Confidence 3 33678999999999999999886544443333333 258999999999998652 1
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
...+++.+. +. +++++ |||++|.|++++++.+.+.+.
T Consensus 361 ------~~~~~l~~~-~~------~~~i~---------vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 361 ------ALIRAIADG-TG------TEVIG---------ISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ------HHHHHHHHH-HT------SCEEE---------CBTTTTBSHHHHHHHHTHHHH
T ss_pred ------hhHHHHHhc-CC------CceEE---------EEECCCCCHHHHHHHHHHHHh
Confidence 112334443 21 35777 999999999999998887653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.4e-21 Score=185.80 Aligned_cols=167 Identities=16% Similarity=0.126 Sum_probs=117.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC----
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG---- 92 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G---- 92 (333)
....+||+++|.+|||||||+++|++.. ......++.+.+.....+.++ ...+.||||+|
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~---------------~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN---------------QQEFVIVDTAGMRKK 256 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEET---------------TEEEEETTGGGTTTB
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEEC---------------CceEEEEECCCCCcC
Confidence 3456899999999999999999999764 233344444555555555554 23799999999
Q ss_pred ------chhhhhhHHh-hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 93 ------HERYKDCRSI-LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 93 ------~e~~~~~~~~-~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
+++|..+... +++.+|++|+|+|+++..+.. ...|+..+... ++|+|||+||+|+.+
T Consensus 257 ~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~~---------------~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 257 GKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHEA---------------GKAVVIVVNKWDAVD 320 (456)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT---------------TCEEEEEEECGGGSC
T ss_pred cccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHHc---------------CCCEEEEEEChhcCC
Confidence 7888877664 788999999999999865533 34566666554 589999999999986
Q ss_pred ccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
. +.+. .+++.+.+++.-. +...+|+++ |||++|.|++++|+.+.+.+...
T Consensus 321 ~--~~~~----~~~~~~~~~~~~~--~~~~~~~~~---------~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 321 K--DEST----MKEFEENIRDHFQ--FLDYAPILF---------MSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp C--CSSH----HHHHHHHHHHHCG--GGTTSCEEE---------CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred C--chHH----HHHHHHHHHHhcc--cCCCCCEEE---------EcCCCCcCHHHHHHHHHHHHHHh
Confidence 5 3333 2555555554311 111257777 99999999999999998876543
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=177.54 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=115.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC--CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----h
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSR--PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----Y 96 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~ 96 (333)
+|+|||.+|||||||+++|++...... ...|.... ...+.++ ....+.||||||..+ +
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~--~g~v~~~--------------~~~~~~l~DtPG~i~~a~~~ 223 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN--LGMVETD--------------DGRSFVMADLPGLIEGAHQG 223 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC--EEEEECS--------------SSCEEEEEEHHHHHHHTTCT
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce--EEEEEeC--------------CCceEEEecCCCCccccccc
Confidence 689999999999999999997654222 22333332 3344443 125689999999543 3
Q ss_pred hhhHHhhcc---CCcEEEEEEECCC---cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 97 KDCRSILYS---QINGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 97 ~~~~~~~~~---~ad~vIlV~D~s~---~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
..+...|++ .+|++|+|+|+++ +.+++.+..|+.++..+.. ...++|++||+||+|+...
T Consensus 224 ~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~----------~l~~~p~ilV~NK~Dl~~~---- 289 (342)
T 1lnz_A 224 VGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL----------RLTERPQIIVANKMDMPEA---- 289 (342)
T ss_dssp TTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS----------STTTSCBCBEEECTTSTTH----
T ss_pred chhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh----------hhcCCCEEEEEECccCCCC----
Confidence 344455554 5999999999999 8899999999999988631 1237899999999999764
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+..+++++.++.. +++++ +||+++.|++++++.|.+.+
T Consensus 290 ------~e~~~~l~~~l~~~-----~~v~~---------iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 290 ------AENLEAFKEKLTDD-----YPVFP---------ISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp ------HHHHHHHHHHCCSC-----CCBCC---------CSSCCSSTTHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhhcC-----CCEEE---------EECCCCcCHHHHHHHHHHHH
Confidence 14566777776531 46777 99999999999999888765
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=179.86 Aligned_cols=151 Identities=20% Similarity=0.192 Sum_probs=102.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER------ 95 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~------ 95 (333)
+|+|||.+|||||||+|+|++.... ....++++.+.....+.++ ...+.||||+|.+.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~---------------~~~~~l~DT~G~~~~~~~~~ 67 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY---------------GKTFKLVDTCGVFDNPQDII 67 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET---------------TEEEEEEECTTTTSSGGGCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEEC---------------CeEEEEEECCCccccccchH
Confidence 8999999999999999999987642 3445555566666666664 24589999999654
Q ss_pred ---hhhhHHhhccCCcEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 96 ---YKDCRSILYSQINGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 96 ---~~~~~~~~~~~ad~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
+......+++.+|++|+|||+++..+... +..|+.. . ++|++||+||+|+...
T Consensus 68 ~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~---~---------------~~p~ilv~NK~D~~~~---- 125 (439)
T 1mky_A 68 SQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK---S---------------TVDTILVANKAENLRE---- 125 (439)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH---H---------------TCCEEEEEESCCSHHH----
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c---------------CCCEEEEEeCCCCccc----
Confidence 34556678999999999999998766543 3334332 2 5799999999998632
Q ss_pred cCcccHHHHH-HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAA-RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 171 v~~~~~~~~~-~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+ ...+ .++. .+|+. ++++ +||++|.|++++++.+.+.+..
T Consensus 126 ~-----~~~~~~~~~-~lg~~------~~~~---------iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 126 F-----EREVKPELY-SLGFG------EPIP---------VSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp H-----HHHTHHHHG-GGSSC------SCEE---------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred c-----HHHHHHHHH-hcCCC------CEEE---------EeccCCCCHHHHHHHHHHhccc
Confidence 0 0222 3333 34431 4566 9999999999999999887753
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-21 Score=185.79 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=112.0
Q ss_pred cCCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCC
Q 019959 13 LNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDIS 91 (333)
Q Consensus 13 ~~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~ 91 (333)
++..+....++|+|+|..|||||||+++|++..+. ....++.+.+...+.+.+. ....+.||||+
T Consensus 26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~--------------~~~~l~liDTp 91 (423)
T 3qq5_A 26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH--------------PIGPVTLVDTP 91 (423)
T ss_dssp CCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET--------------TTEEEEEEECS
T ss_pred cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC--------------CCCeEEEEECc
Confidence 34556677899999999999999999999988763 3334444556666666664 12379999999
Q ss_pred Cchhhhhh-------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 92 GHERYKDC-------RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 92 G~e~~~~~-------~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
|++++..+ ...++..+|++|+|||++.. .....|+..+.+. ++|+++|+||+|+.
T Consensus 92 G~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---------------~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 92 GLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---------------EIPFVVVVNKIDVL 153 (423)
T ss_dssp STTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---------------TCCEEEECCCCTTT
T ss_pred CCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---------------CCCEEEEEeCcCCC
Confidence 98876544 34578899999999999333 3345688777776 58999999999998
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.... . +.++++++.++ +++++ +||++|.|++++++.+.+.+
T Consensus 154 ~~~~--~------~~~~~l~~~~g-------~~v~~---------vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 154 GEKA--E------ELKGLYESRYE-------AKVLL---------VSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp TCCC--T------HHHHHSSCCTT-------CCCCC---------CSSCCTTSTTTHHHHHHHHS
T ss_pred CccH--H------HHHHHHHHHcC-------CCEEE---------EECCCCCCHHHHHHHHHHhh
Confidence 7532 1 34555554444 56888 99999999999998887765
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=175.76 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=113.5
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCcccceeEEEEEE
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSS-------------------------------FSRPSQTIGCTVGVKHI 63 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~ 63 (333)
..+....++|+++|.+++|||||+++|++..- ..+..+.++.+.....+
T Consensus 11 ~~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~ 90 (439)
T 3j2k_7 11 GAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYF 90 (439)
T ss_pred CCCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEE
Confidence 33456678999999999999999999964311 11112334444444444
Q ss_pred EeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCccc---HH---HHHHHHHHHHhcCC
Q 019959 64 TYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT---KT---SLQKWAVEIATSGT 137 (333)
Q Consensus 64 ~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S---~~---~l~~~~~~i~~~~~ 137 (333)
.. ....+.||||||+++|......++..+|++|+|+|+++... |+ .....+..+...
T Consensus 91 ~~---------------~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-- 153 (439)
T 3j2k_7 91 ET---------------EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-- 153 (439)
T ss_pred ec---------------CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc--
Confidence 43 24579999999999999988889999999999999998642 11 122222233333
Q ss_pred CCCCCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc
Q 019959 138 FSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR 216 (333)
Q Consensus 138 ~~~~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~ 216 (333)
++| +|||+||+|+...+..+....++.++...+++.+|+..- ..+++++ +||++|.
T Consensus 154 -------------~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~-~~~~~i~---------iSA~~G~ 210 (439)
T 3j2k_7 154 -------------GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPK-KDIHFMP---------CSGLTGA 210 (439)
T ss_pred -------------CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhccccc-CCeeEEE---------eeccCCc
Confidence 466 999999999964221111122334566677777775321 1357777 9999999
Q ss_pred CHHHHHH
Q 019959 217 YDKEAVM 223 (333)
Q Consensus 217 ~v~~~~~ 223 (333)
|++++.+
T Consensus 211 ni~~l~~ 217 (439)
T 3j2k_7 211 NLKEQSD 217 (439)
T ss_pred ccccccc
Confidence 9998665
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-20 Score=158.08 Aligned_cols=121 Identities=21% Similarity=0.265 Sum_probs=87.7
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCC---CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFS---RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
......++|+|+|++|||||||+++|++..+.. ...++.+.++ ..+.+.+|||+|
T Consensus 43 ~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~l~Dt~G 100 (193)
T 2ged_A 43 GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------------------DGSGVTLVDFPG 100 (193)
T ss_dssp ---CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----------------------CCTTCSEEEETT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----------------------cCCeEEEEECCC
Confidence 344667899999999999999999999887643 2222222221 234488999999
Q ss_pred chhhhhhHHhhccC----CcEEEEEEECC-CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 93 HERYKDCRSILYSQ----INGVIFVHDLS-QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 93 ~e~~~~~~~~~~~~----ad~vIlV~D~s-~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
++.+...+..++.. +|++|+|||++ +..++..+..|+..+....... ...++|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 101 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS--------CENGIDILIACNKSELFTA 171 (193)
T ss_dssp CCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHH--------STTCCCEEEEEECTTSTTC
T ss_pred CchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhc--------cccCCCEEEEEEchHhcCC
Confidence 99887777777665 89999999999 8999999988988876542100 0136899999999999865
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-19 Score=169.48 Aligned_cols=175 Identities=18% Similarity=0.187 Sum_probs=115.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCC-----------ccCCCCCceEEEE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSN-----------SIKGDSERDFFVE 86 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~-----------~i~~~~~~~~~l~ 86 (333)
....++|+++|.+|+|||||+++|++...... .+ +....+.......... ...........+.
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LG--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS 78 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SE--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cC--ccccceeeccccccccceecccccccccccccccccceEE
Confidence 34568999999999999999999997543221 11 1111111000000000 0000112337899
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
||||||+++|......++..+|++|+|+|+++..++.....|+..+.... ..|+++|+||+|+.+.
T Consensus 79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--------------~~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 79 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--------------VKNLIIVQNKVDVVSK 144 (403)
T ss_dssp EEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--------------CCCEEEEEECGGGSCH
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--------------CCCEEEEEECccccch
Confidence 99999999999999899999999999999999887788888887776663 3589999999999864
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+. .. +..++..++.+..+. ..+|+++ +||++|.|++++++.+.+.+
T Consensus 145 ~~--~~--~~~~~i~~~l~~~~~----~~~~ii~---------vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 145 EE--AL--SQYRQIKQFTKGTWA----ENVPIIP---------VSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HH--HH--HHHHHHHHHHTTSTT----TTCCEEE---------CBTTTTBSHHHHHHHHHHHS
T ss_pred HH--HH--HHHHHHHHHHHhhCC----CCCEEEE---------EECCCCcChHHHHHHHHHhC
Confidence 21 00 011223333322222 2467887 99999999998888776543
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=178.78 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=112.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch-hhh--
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE-RYK-- 97 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e-~~~-- 97 (333)
++|+|+|.+|||||||+|+|++..+ .....++.+.++....+.++ ...+.||||+|.+ ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~---------------g~~~~l~DTaG~~~~~~~~ 308 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR---------------GILFRIVDTAGVRSETNDL 308 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET---------------TEEEEEEESSCCCSSCCTT
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC---------------CeEEEEEECCCccccchhh
Confidence 7999999999999999999998753 23444445666666777664 3568999999987 543
Q ss_pred ------hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 98 ------DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 98 ------~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
.....++..+|++|+|||++++.+++....| ..+ .+.|+++|+||+|+... +
T Consensus 309 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l-----------------~~~piivV~NK~DL~~~----~ 366 (482)
T 1xzp_A 309 VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI-----------------KNKRYLVVINKVDVVEK----I 366 (482)
T ss_dssp CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH-----------------TTSSEEEEEEECSSCCC----C
T ss_pred HHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHH-HHh-----------------cCCCEEEEEECcccccc----c
Confidence 2234578899999999999999888775433 332 15799999999999743 2
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
. .+++.+++ +. .+++++ |||++|.|++++++.+.+.+..
T Consensus 367 ~----~~~~~~~~---~~-----~~~~i~---------iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 367 N----EEEIKNKL---GT-----DRHMVK---------ISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp C----HHHHHHHH---TC-----STTEEE---------EEGGGTCCHHHHHHHHHHHTHH
T ss_pred C----HHHHHHHh---cC-----CCcEEE---------EECCCCCCHHHHHHHHHHHHhh
Confidence 2 23344332 21 256777 9999999999999999887664
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-19 Score=166.35 Aligned_cols=166 Identities=16% Similarity=0.056 Sum_probs=112.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc---------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH--------- 93 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~--------- 93 (333)
.|+|+|++|||||||+|+|++..+.....+..+.+.....+.++ + ..+.+|||+|.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~-------------g--~~v~l~DT~G~i~~lp~~lv 245 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPIN-------------N--RKIMLVDTVGFIRGIPPQIV 245 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEET-------------T--EEEEEEECCCBCSSCCGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEEC-------------C--EEEEEEeCCCchhcCCHHHH
Confidence 49999999999999999999887654444444555666777765 2 46899999996
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcc--cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~--S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
+.|..+.. .+..+|++++|+|++++. .++.+..|...+..... .+.|+++|+||+|+.... .
T Consensus 246 e~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~------------~~~p~ilV~NK~Dl~~~~---~ 309 (364)
T 2qtf_A 246 DAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV------------SGKPILVTLNKIDKINGD---L 309 (364)
T ss_dssp HHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC------------CSCCEEEEEECGGGCCSC---H
T ss_pred HHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc------------CCCCEEEEEECCCCCCch---H
Confidence 33544444 478999999999999987 66677777766665532 368999999999997531 0
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
....+.+..++..++.. ..++++ +||++|.|++++++.+.+.+....+
T Consensus 310 --~~~~~~~~~l~~~l~~~----~~~~~~---------~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 310 --YKKLDLVEKLSKELYSP----IFDVIP---------ISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp --HHHHHHHHHHHHHHCSC----EEEEEE---------CBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHHHHHhcCC----CCcEEE---------EECCCCcCHHHHHHHHHHHhcccCC
Confidence 01123344455555211 134566 9999999999999999887766544
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=166.64 Aligned_cols=174 Identities=17% Similarity=0.141 Sum_probs=104.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC---CCCCCCCc--ccceeEEEEEEEeCCCCC---CCCccCCCCC----ceEEEE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG---SSFSRPSQ--TIGCTVGVKHITYGSSGS---SSNSIKGDSE----RDFFVE 86 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~---~~~~~~~~--t~~~~~~~~~~~~~~~~~---~~~~i~~~~~----~~~~l~ 86 (333)
...++|+++|..++|||||+++|++. .+..+..+ |+...+....+....... +..... ..+ ....+.
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~-~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCP-NCLAETEFLRRVS 84 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCT-TSCCBCEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccccccccccccccccccccccc-ccCcccccccEEE
Confidence 45689999999999999999999954 33333334 555555444432110000 000000 001 137899
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCc----ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQR----RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~----~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
||||||+++|.......+..+|++|+|+|+++. .+++++..| .... ..|+++|+||+|
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l~--------------~~~iivv~NK~D 146 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EILG--------------IDKIIIVQNKID 146 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHTT--------------CCCEEEEEECTT
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHcC--------------CCeEEEEEEccC
Confidence 999999999988877778889999999999964 344444332 2221 247999999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.+...... ..++++++++.... ..+++++ +||++|.|++++++.|.+.
T Consensus 147 l~~~~~~~~----~~~~i~~~l~~~~~----~~~~~i~---------vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 147 LVDEKQAEE----NYEQIKEFVKGTIA----ENAPIIP---------ISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp SSCTTTTTT----HHHHHHHHHTTSTT----TTCCEEE---------C------CHHHHHHHHHHH
T ss_pred CCCHHHHHH----HHHHHHHHHhhcCC----CCCeEEE---------eeCCCCCCHHHHHHHHHHh
Confidence 986531111 23556666654322 2367888 9999999998888777653
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-19 Score=174.97 Aligned_cols=163 Identities=16% Similarity=0.161 Sum_probs=112.2
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCC-------CCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEe
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGS-------SFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWD 89 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~D 89 (333)
.....++|+++|..++|||||+++|++.. +..+..+.++.+.....+.++ ...+.|||
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---------------~~~i~iiD 79 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE---------------NYRITLVD 79 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET---------------TEEEEECC
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC---------------CEEEEEEE
Confidence 34567899999999999999999999766 223333333444444444443 36799999
Q ss_pred CCCchhhhhhHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 90 ISGHERYKDCRSILYSQINGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 90 t~G~e~~~~~~~~~~~~ad~vIlV~D~s~~---~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
|||+++|......++..+|++|+|+|+++. .+++.+ ..+... ++|+|+|+||+|+.+.
T Consensus 80 tPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~~---------------~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 80 APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDHF---------------NIPIIVVITKSDNAGT 140 (482)
T ss_dssp CSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHHT---------------TCCBCEEEECTTSSCH
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHHc---------------CCCEEEEEECCCcccc
Confidence 999999988888889999999999999984 344333 223333 5788999999999863
Q ss_pred cCCccCcccHHHHHHHHHHHc-CCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQ-GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~-~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
... .++.++++++++.. ++. .+++++ +||++|.|++++++.|.+.+-
T Consensus 141 ~~~----~~~~~~l~~~l~~~~~~~----~~~ii~---------vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 141 EEI----KRTEMIMKSILQSTHNLK----NSSIIP---------ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHH----HHHHHHHHHHHHHSSSGG----GCCEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred hhH----HHHHHHHHHHHhhhcccc----cceEEE---------EECcCCCCHHHHHHHHHHhhc
Confidence 211 11235555666655 432 367777 999999999999888887664
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=156.51 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=106.1
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcc-cceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQT-IGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
+....++|+|+|.+|||||||+++|++.. +.....++ ++.+.....+.++ ...+.||||||+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~i~iiDTpG~~ 82 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG---------------NREIVIIDTPDMF 82 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET---------------TEEEEEEECCGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC---------------CCEEEEEECcCCC
Confidence 44567899999999999999999999876 44444443 3444444444443 3569999999975
Q ss_pred hhh-----------hhHHhhccCCcEEEEEEECCCcccH-HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee-Cc
Q 019959 95 RYK-----------DCRSILYSQINGVIFVHDLSQRRTK-TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN-KA 161 (333)
Q Consensus 95 ~~~-----------~~~~~~~~~ad~vIlV~D~s~~~S~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN-K~ 161 (333)
.+. .....+++.+|++|+|||+++.... ..+..|+.++.... ...|+++|+| |+
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~i~vv~nK~ 149 (260)
T 2xtp_A 83 SWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-------------AMGHTIVLFTHKE 149 (260)
T ss_dssp GSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-------------GGGGEEEEEECGG
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-------------hhccEEEEEEccc
Confidence 542 2223367899999999999963322 22334444432211 1245555555 99
Q ss_pred CCCCccCCccCcccH----HHHHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNL----VDAARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~----~~~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
|+.... +.. .+ .+.++.+++..+.... +. + ++ +||++|.|++++|+.+.+.+...
T Consensus 150 Dl~~~~---~~~-~i~~~~~~~~~~~~~~~~~~~~~~~--~-~~---------~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 150 DLNGGS---LMD-YMHDSDNKALSKLVAACGGRICAFN--N-RA---------EGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp GGTTCC---HHH-HHHHCCCHHHHHHHHHTTTCEEECC--T-TC---------CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcc---HHH-HHHhcchHHHHHHHHHhCCeEEEec--C-cc---------cccccHHHHHHHHHHHHHHHHhC
Confidence 997431 110 00 0234556666664211 11 1 55 99999999999998888876553
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-20 Score=178.05 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=95.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch-------
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE------- 94 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e------- 94 (333)
.+|+|||.+|||||||+|+|++..+. ....+.|.+.......+. -....+.||||+|++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~-------------~~~~~~~l~DT~G~~~~~~~~~ 69 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAE-------------WLNYDFNLIDTGGIDIGDEPFL 69 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECT-------------TCSSCCEEEC---------CHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEE-------------ECCceEEEEECCCCCCcchhHH
Confidence 59999999999999999999987653 122333443333333322 123458999999985
Q ss_pred -hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 95 -RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 95 -~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
++......++..+|++|+|+|+++..++.. .|+..+... .+.|++||+||+|+..... .
T Consensus 70 ~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--------------~~~pvilv~NK~D~~~~~~-~--- 129 (436)
T 2hjg_A 70 AQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--------------TKKPVVLAVNKLDNTEMRA-N--- 129 (436)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--------------CCSCEEEEEECCCC------C---
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--------------cCCCEEEEEECccCccchh-h---
Confidence 667777788999999999999999877654 344443332 2689999999999975411 0
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.++. .+|+. ++++ +||++|.|++++++.+.+.+
T Consensus 130 ------~~~~~-~lg~~------~~~~---------iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 130 ------IYDFY-SLGFG------EPYP---------ISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp ------CCSSG-GGSSC------CCEE---------CBTTTTBTHHHHHHHHHHTG
T ss_pred ------HHHHH-HcCCC------CeEE---------EeCcCCCChHHHHHHHHHhc
Confidence 11111 23321 3555 99999999999998887654
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-19 Score=167.28 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=98.2
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLS----------QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s----------~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
..+.+.||||+|+++|+.++..+|++++++|+|||++ +..+|+++..|+..+..... ..
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~-----------~~ 249 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC-----------FE 249 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGG-----------GS
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccc-----------cC
Confidence 5789999999999999999999999999999999998 78899999999999876532 13
Q ss_pred CCcEEEEeeCcCCCCccCCccC---------------cccHHHHHHHHHHH-c------CCCCC--CcCCCccccCCCCC
Q 019959 151 PVPYVVIGNKADVAAKEGTRGS---------------SGNLVDAARQWVEK-Q------GLLPS--SEELPLTESFPGGG 206 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~~~~r~v~---------------~~~~~~~~~~~~~~-~------~~~~~--~~~~p~~E~~~~~~ 206 (333)
++|+||||||+||..+....+. ...-.+++.+++.+ + .-..- ...+.++|
T Consensus 250 ~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~e------ 323 (354)
T 2xtz_A 250 KTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYR------ 323 (354)
T ss_dssp SCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEE------
T ss_pred CCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEE------
Confidence 7999999999999654211111 00114677777543 1 10000 00133566
Q ss_pred ceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 207 GLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 207 ~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
|||+++.||+++|+.+.+.+++..+
T Consensus 324 ---TSA~d~~nV~~vF~~v~~~I~~~~l 348 (354)
T 2xtz_A 324 ---TTALDQKLVKKTFKLVDETLRRRNL 348 (354)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---EEeecchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887655
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=174.58 Aligned_cols=159 Identities=13% Similarity=0.168 Sum_probs=103.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC--C-----------------------------CCCCcccceeEEEEEEEeCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS--F-----------------------------SRPSQTIGCTVGVKHITYGSS 68 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 68 (333)
..+||+|+|.+|+|||||+++|++... . .+... |.++......+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~--GiTi~~~~~~~~-- 107 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERER--GVTVSICTSHFS-- 107 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------C--CSSCCCCEEEEE--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhc--CcceEeeeEEEe--
Confidence 468999999999999999999985511 1 01111 222222222222
Q ss_pred CCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHH------HHHHHHHHHhcCCCCCCC
Q 019959 69 GSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTS------LQKWAVEIATSGTFSAPL 142 (333)
Q Consensus 69 ~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~------l~~~~~~i~~~~~~~~~~ 142 (333)
...+.+.||||||+++|......++..+|++|+|+|+++..++.. ....+..+....
T Consensus 108 -----------~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~------ 170 (483)
T 3p26_A 108 -----------THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG------ 170 (483)
T ss_dssp -----------CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT------
T ss_pred -----------cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC------
Confidence 245679999999999999999999999999999999999765432 122222222221
Q ss_pred CCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 143 ~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
..|+|||+||+|+.+. +.....++.+++..+.+.+|+.. ..++|++ +||++|.|+++
T Consensus 171 --------~~~iIvviNK~Dl~~~--~~~~~~~i~~~~~~~l~~~g~~~--~~~~~i~---------iSA~~g~gi~e 227 (483)
T 3p26_A 171 --------IHNLIIAMNKMDNVDW--SQQRFEEIKSKLLPYLVDIGFFE--DNINWVP---------ISGFSGEGVYK 227 (483)
T ss_dssp --------CCCEEEEEECGGGGTT--CHHHHHHHHHHHHHHHHHHTCCG--GGEEEEE---------CCSSSCTTSSS
T ss_pred --------CCcEEEEEECcCcccc--hHHHHHHHHHHHHHHHHHcCCCc--ccceEEE---------EeeecCCCccc
Confidence 2469999999999863 22222233455666666667531 1257777 99999999975
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=175.27 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=101.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
.+||+|+|++|||||||+|+|++..+. ....++.+.++....+.++ .+.+.||||+|...+...
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~---------------g~~v~liDT~G~~~~~~~ 288 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG---------------GIPVQVLDTAGIRETSDQ 288 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET---------------TEEEEECC----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC---------------CEEEEEEECCccccchhH
Confidence 479999999999999999999976432 3334455566656666664 356899999997665433
Q ss_pred H--------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 100 R--------SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 100 ~--------~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
. ..++..+|++|+|||++++.++.. ..|+..+ ...|+++|+||+|+.... .+
T Consensus 289 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----------------~~~piivV~NK~Dl~~~~--~~ 348 (462)
T 3geh_A 289 VEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV-----------------KHRPLILVMNKIDLVEKQ--LI 348 (462)
T ss_dssp ----------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH-----------------TTSCEEEEEECTTSSCGG--GS
T ss_pred HHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc-----------------cCCcEEEEEECCCCCcch--hh
Confidence 2 235789999999999999887765 4555554 146999999999998652 11
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
. .+..+...+++++ +||++|.|++++++.+.+.+.
T Consensus 349 ~---------------~~~~~~~~~~~i~---------iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 349 T---------------SLEYPENITQIVH---------TAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp T---------------TCCCCTTCCCEEE---------EBTTTTBSHHHHHHHHHHHHT
T ss_pred H---------------HHHHhccCCcEEE---------EECCCCCCHHHHHHHHHHHHh
Confidence 1 0111111356777 999999999999988877653
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-20 Score=186.29 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=117.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+..+|+|+|.+++|||||+++|++..+.....++++.++....+.++ ....+.||||||++.|..+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~--------------~g~~i~~iDTPGhe~f~~~ 68 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP--------------SGEKITFLDTPGHAAFSAM 68 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS--------------CSSCCBCEECSSSCCTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC--------------CCCEEEEEECCChHHHHHH
Confidence 34589999999999999999999776655555565555544444332 1235889999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..++..+|++|+|||+++....+....| ..+... ++|++||+||+|+.......+. +.
T Consensus 69 ~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~~---------------~vPiIVViNKiDl~~~~~~~v~-----~~ 127 (537)
T 3izy_P 69 RARGTQVTDIVILVVAADDGVMKQTVESI-QHAKDA---------------HVPIVLAINKCDKAEADPEKVK-----KE 127 (537)
T ss_dssp BBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHTT---------------TCCEEECCBSGGGTTTSCCSSS-----SH
T ss_pred HHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHHc---------------CCcEEEEEecccccccchHHHH-----HH
Confidence 99999999999999999998776665444 333332 6899999999999764322222 11
Q ss_pred HHHHHHHcCC--CCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~--~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
. ..+++ ..+...+++++ +||++|.|++++++.+...+
T Consensus 128 l----~~~~~~~e~~~~~~~iv~---------vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 128 L----LAYDVVCEDYGGDVQAVH---------VSALTGENMMALAEATIALA 166 (537)
T ss_dssp H----HHTTSCCCCSSSSEEECC---------CCSSSSCSSHHHHHHHHHHH
T ss_pred H----HhhhhhHHhcCCCceEEE---------EECCCCCCchhHHHHHHHhh
Confidence 1 22222 22222367788 99999999999998887654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-18 Score=151.38 Aligned_cols=145 Identities=15% Similarity=0.173 Sum_probs=88.3
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCc--ccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC-
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ--TIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG- 92 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G- 92 (333)
.+....+||+|+|.+|||||||+|+|++..+.....+ +++.+.....+.++ ...+.||||||
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~i~liDTpG~ 88 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK---------------ETELVVVDTPGI 88 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET---------------TEEEEEEECCSC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC---------------CceEEEEECCCc
Confidence 3455679999999999999999999999877655544 33444444455443 35689999999
Q ss_pred ----------chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 93 ----------HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 93 ----------~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
.+.+......++..+|++|+|+|+++....+ ..|+..+...... ....|++||+||+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~----------~~~~~~iiv~nK~D 156 (239)
T 3lxx_A 89 FDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGE----------RARSFMILIFTRKD 156 (239)
T ss_dssp C-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHH----------HHGGGEEEEEECGG
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhh----------hccceEEEEEeCCc
Confidence 3345555556677899999999998755422 2333333221100 01469999999999
Q ss_pred CCCccCCccCcc--cHHHHHHHHHHHcCC
Q 019959 163 VAAKEGTRGSSG--NLVDAARQWVEKQGL 189 (333)
Q Consensus 163 l~~~~~r~v~~~--~~~~~~~~~~~~~~~ 189 (333)
+.... .+... ...+.++.++++.+.
T Consensus 157 ~~~~~--~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 157 DLGDT--NLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp GC--------------CHHHHHHHHHHSS
T ss_pred cCCcc--cHHHHHHhchHHHHHHHHHcCC
Confidence 87542 22100 001357778888775
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-19 Score=167.51 Aligned_cols=129 Identities=14% Similarity=0.176 Sum_probs=99.3
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQ----------RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~----------~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
.+.+.||||+|+++++.++..+|++++++|+|||+++ ..++.+...|+..+..... ..+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~-----------~~~ 260 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW-----------FTD 260 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG-----------GTT
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc-----------ccC
Confidence 5789999999999999999999999999999999999 5678988899999877532 137
Q ss_pred CcEEEEeeCcCCCCccCC-------------ccCcccHHHHHHHHHHHc--CCCCC--CcCCCccccCCCCCceeeeecc
Q 019959 152 VPYVVIGNKADVAAKEGT-------------RGSSGNLVDAARQWVEKQ--GLLPS--SEELPLTESFPGGGGLIAAAKE 214 (333)
Q Consensus 152 ~PiivVgNK~Dl~~~~~r-------------~v~~~~~~~~~~~~~~~~--~~~~~--~~~~p~~E~~~~~~~~~~SAk~ 214 (333)
+|+||||||+||..+... .++ .+++..++... .+... ...+.++| |||++
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~----~~e~~~~~~~~f~~l~~~~~~~~~~~~e---------tSA~~ 327 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNT----YEEAAAYIQCQFEDLNKRKDTKEIYTHF---------TCATD 327 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSC----HHHHHHHHHHHHHTTCSCTTTCCEEEEE---------CCTTC
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCC----HHHHHHHHHHHHHHhhcccCCCceEEEE---------EECcC
Confidence 999999999999633100 133 47788887642 11100 11356777 99999
Q ss_pred CcCHHHHHHHHHHHHHHHHh
Q 019959 215 ARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 215 g~~v~~~~~~l~~~l~~~~~ 234 (333)
+.||+++|+.+.+.+++..+
T Consensus 328 ~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 328 TKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 99999999999998877644
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=172.95 Aligned_cols=162 Identities=16% Similarity=0.208 Sum_probs=111.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCC-----C------CCcccceeEEEEEE--EeCCCCCCCCccCCCCCceEEE
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGS--SFS-----R------PSQTIGCTVGVKHI--TYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~--~~~-----~------~~~t~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~l 85 (333)
..+|+|+|..++|||||+++|+... +.. . ...+.|.++....+ .+.. .++..+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~----------~~g~~~~l 73 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKA----------SDGETYQL 73 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEEC----------TTSCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEec----------CCCCeEEE
Confidence 4689999999999999999998531 110 0 01122334433322 2220 13567899
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
+||||||+++|......+++.+|++|+|+|+++..+++....|...+.. ++|+|+|+||+|+..
T Consensus 74 ~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~----------------~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 74 NFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM----------------DLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT----------------TCEEEEEEECTTSTT
T ss_pred EEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----------------CCCEEEeeeccCccc
Confidence 9999999999999999999999999999999999888888888766532 589999999999986
Q ss_pred ccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+. .+...++.+.+++.. .++++ +||++|.|++++++.+.+.+
T Consensus 138 a~~--------~~v~~ei~~~lg~~~----~~vi~---------vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 138 ADP--------ERVAEEIEDIVGIDA----TDAVR---------CSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp CCH--------HHHHHHHHHHTCCCC----TTCEE---------ECTTTCTTHHHHHHHHHHHS
T ss_pred ccH--------HHHHHHHHHHhCCCc----ceEEE---------eecccCCCchhHHHHHhhcC
Confidence 421 244567777777531 24666 99999999998888877643
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=171.80 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=113.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--CCCCC-----C------CcccceeEEE--EEEEeCCCCCCCCccCCCCCceEE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--SSFSR-----P------SQTIGCTVGV--KHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~-----~------~~t~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
...+|+|+|..++|||||+++|+.. .+... . ....|.++.. ..+.+.. .++..+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~----------~dg~~~~ 74 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKA----------KDGNTYK 74 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEEC----------TTSCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEc----------CCCCeEE
Confidence 4569999999999999999999852 11110 0 0011222211 1222210 1356789
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
++||||||+++|......+++.+|++|+|+|+++..+++....|..... . ++|+|+|+||+|+.
T Consensus 75 inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~---------------~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 75 LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-Q---------------DLVIIPVINKIDLP 138 (600)
T ss_dssp EEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-T---------------TCEEEEEEECTTST
T ss_pred EEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-C---------------CCCEEEEEeccCcc
Confidence 9999999999999988888999999999999999999988888876553 2 58999999999997
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+. .+...++.+.+++.. .++++ +||++|.|++++++.+.+.+
T Consensus 139 ~a~~--------~~v~~el~~~lg~~~----~~vi~---------vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 139 SADV--------DRVKKQIEEVLGLDP----EEAIL---------ASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp TCCH--------HHHHHHHHHTSCCCG----GGCEE---------CBTTTTBSHHHHHHHHHHHS
T ss_pred ccCH--------HHHHHHHHHhhCCCc----ccEEE---------EEeecCCCchHHHHHHHHhc
Confidence 6421 244556666666531 23666 99999999999888877644
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=167.39 Aligned_cols=164 Identities=18% Similarity=0.128 Sum_probs=105.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
..+||+|+|++|||||||+|+|++.... ....++.+.+.....+.++ + ..+.+|||+|..++..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~-------------g--~~~~l~Dt~G~~~~~~ 243 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID-------------G--RKYVFVDTAGLRRKSR 243 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET-------------T--EEEEESSCSCC-----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC-------------C--EEEEEEECCCCccccc
Confidence 4589999999999999999999987542 2233333444445555554 2 3578999999754332
Q ss_pred hH------------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 99 CR------------SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 99 ~~------------~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.. ..+++.+|++++|+|+++..+++.. .+...+... +.|+++|+||+|+.+.
T Consensus 244 ~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~~---------------~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 244 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMERR---------------GRASVVVFNKWDLVVH 307 (439)
T ss_dssp ------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---------------TCEEEEEEECGGGSTT
T ss_pred cchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHHc---------------CCCEEEEEECccCCCc
Confidence 21 2356789999999999998777653 233333333 5899999999999864
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+.+.. .+..+.+.+.+.... .+|+++ +||++|.|++++++.+.+.+..
T Consensus 308 --~~~~~---~~~~~~~~~~~~~~~---~~~~~~---------~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 308 --REKRY---DEFTKLFREKLYFID---YSPLIF---------TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp --GGGCH---HHHHHHHHHHCGGGT---TSCEEE---------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred --hhhHH---HHHHHHHHHHhccCC---CCcEEE---------EECCCCCCHHHHHHHHHHHHHh
Confidence 22221 122223334443211 256777 9999999999999999876543
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-18 Score=161.58 Aligned_cols=129 Identities=15% Similarity=0.172 Sum_probs=97.0
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLS----------QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s----------~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
.+.++||||+|+++++.++..||++++++|+|||++ +..++.+...|+..+..... ..+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~-----------~~~ 234 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW-----------FQN 234 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG-----------GTT
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc-----------cCC
Confidence 578999999999999999999999999999999665 66778888888888876532 237
Q ss_pred CcEEEEeeCcCCCCcc--------------CCccCcccHHHHHHHHHHHc--CCCC-CCcCCCccccCCCCCceeeeecc
Q 019959 152 VPYVVIGNKADVAAKE--------------GTRGSSGNLVDAARQWVEKQ--GLLP-SSEELPLTESFPGGGGLIAAAKE 214 (333)
Q Consensus 152 ~PiivVgNK~Dl~~~~--------------~r~v~~~~~~~~~~~~~~~~--~~~~-~~~~~p~~E~~~~~~~~~~SAk~ 214 (333)
+|++|+|||+||..+. +..++ .+++.++.... .+.. -...+.+++ |||++
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~----~e~a~~fi~~~F~~~~~~~~~~i~~~~---------TsA~d 301 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRD----AQAAREFILKMFVDLNPDSDKIIYSHF---------TCATD 301 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSC----HHHHHHHHHHHHHSSCTTTTSCEEEEE---------CCTTC
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCC----HHHHHHHHHHHHHhhcccccCCcEEEE---------EEeec
Confidence 9999999999987532 11233 47777775431 1100 001244566 99999
Q ss_pred CcCHHHHHHHHHHHHHHHHh
Q 019959 215 ARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 215 g~~v~~~~~~l~~~l~~~~~ 234 (333)
+.||+.+|..+.+.++++.+
T Consensus 302 ~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 302 TENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999887654
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=167.09 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=108.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--------CCCCC-------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceE
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--------SSFSR-------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
...++|+++|..++|||||+++|++. .+... ...+.|.++....+.+. ....
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-------------~~~~ 75 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-------------TAKR 75 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-------------CSSC
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec-------------cCCe
Confidence 34689999999999999999999963 22110 00123344433444443 2346
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKAD 162 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~D 162 (333)
.+.||||||+++|......++..+|++|+|+|+++....+ ...|+..+... ++| +++|+||+|
T Consensus 76 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~---------------~ip~iivviNK~D 139 (405)
T 2c78_A 76 HYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---------------GVPYIVVFMNKVD 139 (405)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT---------------TCCCEEEEEECGG
T ss_pred EEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc---------------CCCEEEEEEECcc
Confidence 7999999999999988888899999999999999876544 34566655554 578 899999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
+.... .. ...+.++++++++.+++.. .++|+++ +||++|.|+
T Consensus 140 l~~~~--~~-~~~~~~~~~~~l~~~~~~~--~~~~~i~---------~SA~~g~~v 181 (405)
T 2c78_A 140 MVDDP--EL-LDLVEMEVRDLLNQYEFPG--DEVPVIR---------GSALLALEQ 181 (405)
T ss_dssp GCCCH--HH-HHHHHHHHHHHHHHTTSCT--TTSCEEE---------CCHHHHHHH
T ss_pred ccCcH--HH-HHHHHHHHHHHHHHhcccc--cCCCEEE---------ccHHHhhhh
Confidence 97521 10 0112345677777777421 1367887 999999773
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=164.83 Aligned_cols=155 Identities=22% Similarity=0.188 Sum_probs=105.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC-------CCCCC-------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG-------SSFSR-------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~-------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 85 (333)
..++|+++|..++|||||+++|++. .+... .....|.++....+.+. .....+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-------------~~~~~~ 68 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-------------TAARHY 68 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-------------CSSCEE
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-------------cCCeEE
Confidence 3589999999999999999999863 11110 00122333333333343 234679
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVA 164 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~Dl~ 164 (333)
.||||||+++|......++..+|++|+|+|+++....+....| ..+... ++| +++|+||+|+.
T Consensus 69 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~---------------~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 69 AHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI---------------GVEHVVVYVNKADAV 132 (397)
T ss_dssp EEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT---------------TCCCEEEEEECGGGC
T ss_pred EEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc---------------CCCeEEEEEECcccC
Confidence 9999999999988888889999999999999997665554444 444433 578 78999999997
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 217 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~ 217 (333)
... .. ...+.++++++++.+++.. +.+|+++ +||++|.|
T Consensus 133 ~~~--~~-~~~~~~~~~~~l~~~~~~~--~~~~~i~---------~SA~~g~n 171 (397)
T 1d2e_A 133 QDS--EM-VELVELEIRELLTEFGYKG--EETPIIV---------GSALCALE 171 (397)
T ss_dssp SCH--HH-HHHHHHHHHHHHHHTTSCT--TTSCEEE---------CCHHHHHT
T ss_pred CCH--HH-HHHHHHHHHHHHHHcCCCc--ccCcEEE---------eehhhccc
Confidence 521 10 0112356777888777521 1367888 99999865
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8e-19 Score=170.77 Aligned_cols=169 Identities=13% Similarity=0.179 Sum_probs=108.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--CCCCCC-----------------------------CcccceeEEEEEEEeCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--SSFSRP-----------------------------SQTIGCTVGVKHITYGSS 68 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~ 68 (333)
..++|+++|..++|||||+++|++. .+.... ...++.+.....+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~---- 80 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE---- 80 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE----
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe----
Confidence 4689999999999999999999864 332110 11222222222332
Q ss_pred CCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 019959 69 GSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPG 148 (333)
Q Consensus 69 ~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~ 148 (333)
...+.+.||||||+++|......++..+|++|+|||+++ .+|+.+..|..+..++.....
T Consensus 81 -----------~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~-------- 140 (435)
T 1jny_A 81 -----------TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAK-------- 140 (435)
T ss_dssp -----------CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHH--------
T ss_pred -----------cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHH--------
Confidence 235679999999999999988889999999999999999 778765444333222110000
Q ss_pred CCCC-cEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 149 GLPV-PYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 149 ~~~~-PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
..++ |+|||+||+|+.+....+....++.++++++++.+++.. .++++++ +||++|.|+.+.++
T Consensus 141 ~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~i~---------iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 141 TMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNT--NKVRFVP---------VVAPSGDNITHKSE 205 (435)
T ss_dssp HTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCC--TTCEEEE---------CBTTTTBTTTBCCS
T ss_pred HcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCc--CCceEEE---------eecccCcccccccc
Confidence 0133 689999999998631111111223467788888877532 1257888 99999999876544
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=164.51 Aligned_cols=176 Identities=18% Similarity=0.157 Sum_probs=109.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC---CCCCCCCc--ccceeEEEEEEEeCCCCC--CCCccCCCCC----ceEEEE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG---SSFSRPSQ--TIGCTVGVKHITYGSSGS--SSNSIKGDSE----RDFFVE 86 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~---~~~~~~~~--t~~~~~~~~~~~~~~~~~--~~~~i~~~~~----~~~~l~ 86 (333)
....++|+++|..++|||||+++|++. .+..+..+ |+...+....+....... ....+....+ ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 355689999999999999999999954 23333333 554444443332110000 0000000001 137899
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc----cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRR----TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~----S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
||||||+++|.......+..+|++|+|+|+++.. +++++..| .... ..|+++|+||+|
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~~--------------~~~iivviNK~D 148 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QIIG--------------QKNIIIAQNKIE 148 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHHT--------------CCCEEEEEECGG
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHcC--------------CCcEEEEEECcc
Confidence 9999999999888777788999999999999643 44444332 2232 257999999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+...+... +..++++++++... ...+|+++ +||++|.|++++++.|.+.
T Consensus 149 l~~~~~~~----~~~~~i~~~l~~~~----~~~~~~i~---------vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 149 LVDKEKAL----ENYRQIKEFIEGTV----AENAPIIP---------ISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp GSCHHHHH----HHHHHHHHHHTTST----TTTCCEEE---------CBTTTTBSHHHHHHHHHHH
T ss_pred CCCHHHHH----HHHHHHHHHHHhcC----cCCCeEEE---------eeCCCCCCHHHHHHHHHHh
Confidence 98642100 11234444443321 12367777 9999999998888877653
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=160.93 Aligned_cols=135 Identities=17% Similarity=0.181 Sum_probs=98.9
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLS----------QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s----------~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
..+.++||||+|+++++.++..||++++++|+|||++ +..++.+...|+..+..... ..
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~-----------~~ 227 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF-----------LK 227 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG-----------GT
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc-----------cC
Confidence 3578999999999999999999999999999999999 78889998889988876532 23
Q ss_pred CCcEEEEeeCcCCCCccCCccC---------cccHHHHHHHHHHHcC--------CCCCC------------cCCCcccc
Q 019959 151 PVPYVVIGNKADVAAKEGTRGS---------SGNLVDAARQWVEKQG--------LLPSS------------EELPLTES 201 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~~~~r~v~---------~~~~~~~~~~~~~~~~--------~~~~~------------~~~p~~E~ 201 (333)
++|++|+|||+||..+....+. .....+++.+|+.... +..-. ..+.+++
T Consensus 228 ~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~- 306 (340)
T 4fid_A 228 GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP- 306 (340)
T ss_dssp TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE-
T ss_pred CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE-
Confidence 7999999999998643100000 0001466666654422 00000 1244566
Q ss_pred CCCCCceeeeeccCcCHHHHHHHHHHHHHHHHhcc
Q 019959 202 FPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFS 236 (333)
Q Consensus 202 ~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~~~ 236 (333)
|||++..||+.+|+.+.+.+++ .+..
T Consensus 307 --------TsA~dt~nv~~vF~~v~~~Il~-~l~~ 332 (340)
T 4fid_A 307 --------TNATDGSNIKRVFMLAVDVIMK-NMAA 332 (340)
T ss_dssp --------ECTTCHHHHHHHHHHHHHHHHH-HHHH
T ss_pred --------EEeeCcHHHHHHHHHHHHHHHH-HHHH
Confidence 9999999999999999999998 5543
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=157.97 Aligned_cols=159 Identities=15% Similarity=0.200 Sum_probs=89.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCC-------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRP-------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDIS 91 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~-------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~ 91 (333)
..++|+|+|.+|||||||+|+|++... ...+ .+|++.+.....+..+ +..+.+.|||||
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~liDTp 73 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG-------------GVQLLLTIVDTP 73 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---------------CCEEEEEEECC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecC-------------CeEEEEEEEECC
Confidence 468999999999999999999886543 3333 5666766655555433 566789999999
Q ss_pred Cch-------hhhhhH-------Hhhcc-------------CCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 019959 92 GHE-------RYKDCR-------SILYS-------------QINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLAS 144 (333)
Q Consensus 92 G~e-------~~~~~~-------~~~~~-------------~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~ 144 (333)
|.. .+..+. ..++. ++|+++++++.+.......-..++..+..
T Consensus 74 G~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---------- 143 (274)
T 3t5d_A 74 GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---------- 143 (274)
T ss_dssp CCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----------
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----------
Confidence 962 233332 22333 37899999987763322222345555422
Q ss_pred CCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHH
Q 019959 145 GGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMK 224 (333)
Q Consensus 145 ~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~ 224 (333)
++|+|+|+||+|+....... ...+.+.+.....+ +++++ +||+++.|++++++.
T Consensus 144 ------~~pvi~V~nK~D~~~~~e~~----~~~~~i~~~l~~~~-------i~v~~---------~sa~~~~~~~~l~~~ 197 (274)
T 3t5d_A 144 ------KVNIIPLIAKADTLTPEECQ----QFKKQIMKEIQEHK-------IKIYE---------FPETDDEEENKLVKK 197 (274)
T ss_dssp ------TSCEEEEESSGGGSCHHHHH----HHHHHHHHHHHHTT-------CCCCC---------C-----------CHH
T ss_pred ------cCCEEEEEeccCCCCHHHHH----HHHHHHHHHHHHcC-------CeEEc---------CCCCCChhHHHHHHH
Confidence 48999999999987542110 01123334444445 45777 999999888777766
Q ss_pred HHH
Q 019959 225 FFR 227 (333)
Q Consensus 225 l~~ 227 (333)
+.+
T Consensus 198 l~~ 200 (274)
T 3t5d_A 198 IKD 200 (274)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=166.93 Aligned_cols=163 Identities=16% Similarity=0.133 Sum_probs=106.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC--CCCC----------CCccc---------------------ceeEEEEEEE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS--SFSR----------PSQTI---------------------GCTVGVKHIT 64 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~--~~~~----------~~~t~---------------------~~~~~~~~~~ 64 (333)
....++|+++|..++|||||+++|++.. +... ...|. ..+.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3456899999999999999999998653 1110 01111 1111111222
Q ss_pred eCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 019959 65 YGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLAS 144 (333)
Q Consensus 65 ~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~ 144 (333)
.....+.||||||+++|......++..+|++|+|+|+++....+ ...|+..+....
T Consensus 101 ---------------~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~~-------- 156 (434)
T 1zun_B 101 ---------------TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLLG-------- 156 (434)
T ss_dssp ---------------CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHTT--------
T ss_pred ---------------cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcC--------
Confidence 23567999999999999888888899999999999999876433 334554444431
Q ss_pred CCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 145 GGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 145 ~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
..|+|+|+||+|+.+.+...+ .++.++.+++++.++.. ...+++++ +||++|.|++++++
T Consensus 157 ------~~~iIvviNK~Dl~~~~~~~~--~~i~~~~~~~~~~~g~~--~~~~~~i~---------vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 157 ------IKHIVVAINKMDLNGFDERVF--ESIKADYLKFAEGIAFK--PTTMAFVP---------MSALKGDNVVNKSE 216 (434)
T ss_dssp ------CCEEEEEEECTTTTTSCHHHH--HHHHHHHHHHHHTTTCC--CSEEEEEE---------CCTTTCTTTSSCCT
T ss_pred ------CCeEEEEEEcCcCCcccHHHH--HHHHHHHHHHHHHhCCC--ccCceEEE---------EeccCCCCcccccc
Confidence 236999999999976311110 11235566677666621 11356777 99999999987543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-19 Score=167.28 Aligned_cols=164 Identities=19% Similarity=0.188 Sum_probs=88.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCC--------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGS-SFSRP--------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDI 90 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~-~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt 90 (333)
..++|+|||++|||||||+++|++.. +...+ .+|++.++....+.. ++..+.+.+|||
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-------------~~~~~~l~i~DT 102 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-------------RGVKLRLTVVDT 102 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----------------CEEEEEEEEC-
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-------------CCcccceEEEEe
Confidence 45899999999999999999987543 32222 134444433222222 245678999999
Q ss_pred CCc-------hhhhhhHH-------hhccCCcEE-----------EEEEECCC-cccHHHHH-HHHHHHHhcCCCCCCCC
Q 019959 91 SGH-------ERYKDCRS-------ILYSQINGV-----------IFVHDLSQ-RRTKTSLQ-KWAVEIATSGTFSAPLA 143 (333)
Q Consensus 91 ~G~-------e~~~~~~~-------~~~~~ad~v-----------IlV~D~s~-~~S~~~l~-~~~~~i~~~~~~~~~~~ 143 (333)
+|+ +.+..+.. .|++.++++ ++||++++ ..++..+. .|+..+ .
T Consensus 103 pG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~------- 172 (361)
T 2qag_A 103 PGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---H------- 172 (361)
T ss_dssp -------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---C-------
T ss_pred ccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---c-------
Confidence 998 66666655 555544433 36666665 45666654 455443 1
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
.++|+|+|+||+|+... +.+.. ..+.+.++++.++ ++|++ +||++|.| ++.|.
T Consensus 173 ------~~~piIlV~NK~Dl~~~--~ev~~--~k~~i~~~~~~~~-------i~~~~---------~Sa~~~~~-~e~~~ 225 (361)
T 2qag_A 173 ------NKVNIVPVIAKADTLTL--KERER--LKKRILDEIEEHN-------IKIYH---------LPDAESDE-DEDFK 225 (361)
T ss_dssp ------S-SCEEEEEECCSSSCH--HHHHH--HHHHHHHHTTCC--------CCSCC---------CC----------CH
T ss_pred ------cCCCEEEEEECCCCCCH--HHHHH--HHHHHHHHHHHCC-------CCEEe---------CCCcCCCc-chhHH
Confidence 26899999999999865 22210 1134444544444 57888 99999998 88888
Q ss_pred HHHHHHHHHH
Q 019959 224 KFFRMLIRRR 233 (333)
Q Consensus 224 ~l~~~l~~~~ 233 (333)
.+++.+....
T Consensus 226 ~l~~~i~~~i 235 (361)
T 2qag_A 226 EQTRLLKASI 235 (361)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcC
Confidence 8888876643
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-18 Score=156.51 Aligned_cols=172 Identities=16% Similarity=0.175 Sum_probs=103.4
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCC------CCcccceeEEEEEEE--------eCCCC---CCCC------
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSR------PSQTIGCTVGVKHIT--------YGSSG---SSSN------ 73 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~------~~~t~~~~~~~~~~~--------~~~~~---~~~~------ 73 (333)
+....++|+|+|.+|||||||+|+|++..+... ..++. .+... +...+ .+..
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~-----~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~ 96 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLV-----LQLVNSTTEYAEFLHCKGKKFTDFEEVRLEI 96 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEE-----EEEEECSSCEEEETTSTTCCBCCHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceE-----EEEecCCcccchhhhcCCcccCCHHHHHHHH
Confidence 345567999999999999999999998877421 12220 00000 00000 0000
Q ss_pred -----ccCC----CC----------CceEEEEEEeCCCch-------------hhhhhHHhhccCCcEEE-EEEECCCcc
Q 019959 74 -----SIKG----DS----------ERDFFVELWDISGHE-------------RYKDCRSILYSQINGVI-FVHDLSQRR 120 (333)
Q Consensus 74 -----~i~~----~~----------~~~~~l~i~Dt~G~e-------------~~~~~~~~~~~~ad~vI-lV~D~s~~~ 120 (333)
.+.+ .. .....+.||||||.. .+..+...++..++++| +|+|+++..
T Consensus 97 ~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~ 176 (299)
T 2aka_B 97 EAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL 176 (299)
T ss_dssp HHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCG
T ss_pred HHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcch
Confidence 0000 00 012569999999953 45667777888888777 699998865
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHH-cCCCCCCcCCCcc
Q 019959 121 TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEK-QGLLPSSEELPLT 199 (333)
Q Consensus 121 S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ 199 (333)
+......|+..+... +.|+++|+||+|+.+.. ... .+ +.+. ..... ....+++
T Consensus 177 ~~~~~~~~~~~~~~~---------------~~~~i~V~NK~Dl~~~~--~~~----~~----~~~~~~~~~~-~~~~~v~ 230 (299)
T 2aka_B 177 ANSDALKIAKEVDPQ---------------GQRTIGVITKLDLMDEG--TDA----RD----VLENKLLPLR-RGYIGVV 230 (299)
T ss_dssp GGCHHHHHHHHHCTT---------------CSSEEEEEECGGGSCTT--CCC----HH----HHTTCSSCCT-TCEEECC
T ss_pred hhhHHHHHHHHhCCC---------------CCeEEEEEEccccCCCC--chH----HH----HHhCCcCcCC-CCcEEEE
Confidence 554444455555322 68999999999998652 111 12 1111 10000 0013566
Q ss_pred ccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 200 ESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 200 E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+ +||++|.|++++++.+.++
T Consensus 231 ~---------~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 231 N---------RSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp C---------CCCBCTTSCBCHHHHHHHH
T ss_pred C---------CChhhccccccHHHHHHHH
Confidence 6 9999999999999888763
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-18 Score=147.50 Aligned_cols=161 Identities=19% Similarity=0.261 Sum_probs=101.5
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch--
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE-- 94 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e-- 94 (333)
+.....+|+|+|++|||||||+++|++..+.....++.|.+.....+.++ + .+.+|||+|..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~-------------~---~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-------------D---GKRLVDLPGYGYA 85 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-------------T---TEEEEECCCCC--
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-------------C---CEEEEECcCCccc
Confidence 34556799999999999999999999877555555666665544444443 1 37899999973
Q ss_pred --------hhhhhHHhhc---cCCcEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 95 --------RYKDCRSILY---SQINGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 95 --------~~~~~~~~~~---~~ad~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+......++ ..++++++|+|+++..++.. +..|+. .. ++|+++|+||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~~---------------~~~~~~v~nK~ 147 (210)
T 1pui_A 86 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---DS---------------NIAVLVLLTKA 147 (210)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---------------TCCEEEEEECG
T ss_pred ccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---Hc---------------CCCeEEEEecc
Confidence 2333333444 47899999999998776643 333432 22 58999999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
|+.....+... .+.++.++.+.+.. +++++ +||+++.|++++++.+.+.+
T Consensus 148 D~~s~~~~~~~----~~~~~~~~~~~~~~-----~~~~~---------~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 148 DKLASGARKAQ----LNMVREAVLAFNGD-----VQVET---------FSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGSCHHHHHHH----HHHHHHHHGGGCSC-----EEEEE---------CBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCchhHHHH----HHHHHHHHHhcCCC-----CceEE---------EeecCCCCHHHHHHHHHHHH
Confidence 98754211111 24455555554421 34555 99999999999988876653
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-18 Score=168.46 Aligned_cols=117 Identities=15% Similarity=0.261 Sum_probs=84.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-----------------CCCC---CcccceeEEEEEEEeCCCCCCCCccCCCCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSS-----------------FSRP---SQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~-----------------~~~~---~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (333)
..+|+|+|.+|||||||+++|+.... ...+ ....|.++......+. .
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-------------~ 79 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFP-------------Y 79 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEE-------------E
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEE-------------e
Confidence 45999999999999999999972110 0000 0001222222222222 2
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
..+.++||||||+++|......+++.+|++|+|+|+++..+......|. .+... ++|+++|+||
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~---------------~iPiivviNK 143 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR---------------HTPIMTFINK 143 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT---------------TCCEEEEEEC
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc---------------CCCEEEEEeC
Confidence 3578999999999999999999999999999999999988888776664 33333 6899999999
Q ss_pred cCCCCc
Q 019959 161 ADVAAK 166 (333)
Q Consensus 161 ~Dl~~~ 166 (333)
+|+...
T Consensus 144 ~Dl~~~ 149 (528)
T 3tr5_A 144 MDRDTR 149 (528)
T ss_dssp TTSCCS
T ss_pred CCCccc
Confidence 999654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-18 Score=170.13 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=97.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC------
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG------ 92 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G------ 92 (333)
....+|+|||.+|||||||+|+|++..+. ....+.|.+.......+. .....+.||||+|
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~-------------~~~~~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAE-------------WLNYDFNLIDTGGIDIGDE 86 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECT-------------TCSSCCEEECCCC------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEE-------------ECCceEEEEECCCCCCcch
Confidence 33469999999999999999999987653 222344555544444443 2345699999999
Q ss_pred --chhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 93 --HERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 93 --~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
++++......++..+|++|+|+|.++..+.. ..|+.++... .+.|++||+||+|+....
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~--------------~~~pvilV~NK~D~~~~~--- 147 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR--------------TKKPVVLAVNKLDNTEMR--- 147 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT--------------CCSCEEEEEECC---------
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH--------------cCCCEEEEEECccchhhh---
Confidence 7788888888999999999999988754433 3444444433 268999999999987431
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+...++ ..+++. ..++ +||++|.|++++++.+.+.+
T Consensus 148 -------~~~~e~-~~lg~~------~~~~---------iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 148 -------ANIYDF-YSLGFG------EPYP---------ISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp ----------CCS-GGGSSS------SEEE---------CCTTTCTTHHHHHHHHHTTG
T ss_pred -------hhHHHH-HHcCCC------ceEE---------eecccccchHHHHHHHHhhc
Confidence 111111 122321 2345 99999999999888886543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-18 Score=156.60 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=100.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch-hh-
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE-RY- 96 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e-~~- 96 (333)
+..+|+|+|.+|||||||+|+|++..+. ....+....+.....+.. ....+.+|||||+. ..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~---------------~~~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE---------------GAYQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE---------------TTEEEEEESSSSCCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE---------------CCeeEEEEECcCCCccch
Confidence 3458999999999999999999987652 111111111111112222 34679999999987 32
Q ss_pred -------hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 97 -------KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 97 -------~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
......++..+|++++|+|+++ -+ ....|+.+.... .+.|+++|+||+|+... +
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~--------------~~~P~ilvlNK~D~~~~--~ 132 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE--------------GKAPVILAVNKVDNVQE--K 132 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS--------------SSSCEEEEEESTTTCCC--H
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh--------------cCCCEEEEEECcccCcc--H
Confidence 2223456789999999999987 33 333455443332 26899999999999862 1
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
. .+.+.+.++++.+++ .++++ +||++|.|++++++.+.+.
T Consensus 133 ~----~~~~~l~~l~~~~~~------~~~i~---------iSA~~g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 133 A----DLLPHLQFLASQMNF------LDIVP---------ISAETGLNVDTIAAIVRKH 172 (301)
T ss_dssp H----HHHHHHHHHHTTSCC------SEEEE---------CCTTTTTTHHHHHHHHHTT
T ss_pred H----HHHHHHHHHHHhcCc------CceEE---------EECCCCCCHHHHHHHHHHh
Confidence 1 112445555554553 13555 9999998888888777653
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-18 Score=170.18 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=106.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCC-------------------------------CcccceeEEEEEEEeCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRP-------------------------------SQTIGCTVGVKHITYGS 67 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~-------------------------------~~t~~~~~~~~~~~~~~ 67 (333)
...++|+|+|.+|||||||+++|++....... .+.++.+.....+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-- 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence 45789999999999999999999966332111 012222233333332
Q ss_pred CCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cH---HHHHHHHHHHHhcCCCCCC
Q 019959 68 SGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TK---TSLQKWAVEIATSGTFSAP 141 (333)
Q Consensus 68 ~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~---~~l~~~~~~i~~~~~~~~~ 141 (333)
..+.+.||||||+++|......++..+|++|+|+|+++.. +| ......+..+...+
T Consensus 243 -------------~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg----- 304 (611)
T 3izq_1 243 -------------HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG----- 304 (611)
T ss_dssp -------------SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT-----
T ss_pred -------------CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC-----
Confidence 3467999999999999999989999999999999999742 11 11111222222221
Q ss_pred CCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHH
Q 019959 142 LASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEA 221 (333)
Q Consensus 142 ~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~ 221 (333)
..|+|||+||+|+... +.....++.+++..+...+|+.. ..+++++ |||++|.|++++
T Consensus 305 ---------i~~iIVVvNKiDl~~~--~~~~~~ei~~~l~~~l~~~g~~~--~~~~~i~---------vSA~tG~gI~el 362 (611)
T 3izq_1 305 ---------IHNLIIAMNKMDNVDW--SQQRFEEIKSKLLPYLVDIGFFE--DNINWVP---------ISGFSGEGVYKI 362 (611)
T ss_dssp ---------CCEEEEEEECTTTTTT--CHHHHHHHHHHHHHHHHHHTCCG--GGCEEEE---------CCTTTCTTTSSC
T ss_pred ---------CCeEEEEEecccccch--hHHHHHHHHHHHHHHHHhhcccc--cCccEEe---------eecccCCCcccc
Confidence 2359999999999863 22222233455666777777532 1257777 999999999865
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-18 Score=166.52 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=105.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--CCCCC-----------------------C------CcccceeEEEEEEEeCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--SSFSR-----------------------P------SQTIGCTVGVKHITYGSS 68 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~~-----------------------~------~~t~~~~~~~~~~~~~~~ 68 (333)
..++|+++|..++|||||+++|++. .+... . ...++.+.....+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~---- 81 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE---- 81 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE----
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe----
Confidence 4689999999999999999999864 22110 0 01122222222332
Q ss_pred CCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cHH---HHHHHHHHHHhcCCCCCCC
Q 019959 69 GSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TKT---SLQKWAVEIATSGTFSAPL 142 (333)
Q Consensus 69 ~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~~---~l~~~~~~i~~~~~~~~~~ 142 (333)
.....+.||||||+++|......++..+|++|+|+|+++.. +|+ ....++..+...
T Consensus 82 -----------~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~------- 143 (458)
T 1f60_A 82 -----------TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------- 143 (458)
T ss_dssp -----------CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT-------
T ss_pred -----------cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc-------
Confidence 23567999999999999998888999999999999999763 221 222233333332
Q ss_pred CCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHH
Q 019959 143 ASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEA 221 (333)
Q Consensus 143 ~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~ 221 (333)
++| +|||+||+|+...+ .....++.++++.+++.+++.. +++++++ +||++|.|+++.
T Consensus 144 --------~v~~iivviNK~Dl~~~~--~~~~~~i~~~~~~~l~~~g~~~--~~~~~i~---------vSA~~g~nv~~~ 202 (458)
T 1f60_A 144 --------GVRQLIVAVNKMDSVKWD--ESRFQEIVKETSNFIKKVGYNP--KTVPFVP---------ISGWNGDNMIEA 202 (458)
T ss_dssp --------TCCEEEEEEECGGGGTTC--HHHHHHHHHHHHHHHHHHTCCG--GGCCEEE---------CCTTTCBTTTBC
T ss_pred --------CCCeEEEEEEccccccCC--HHHHHHHHHHHHHHHHHcCCCc--cCceEEE---------eecccCcCcccc
Confidence 455 99999999997421 1001123456777777777521 1257887 999999998754
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-18 Score=168.93 Aligned_cols=164 Identities=18% Similarity=0.122 Sum_probs=93.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCcccceeEEEEEEEeCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--SSFS-----------------------------RPSQTIGCTVGVKHITYGS 67 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 67 (333)
...++|+++|..++|||||+++|+.. .+.. +....++++.....+.+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-- 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-- 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence 45689999999999999999999742 2210 00011112222222322
Q ss_pred CCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cHHHHHHHH---HHHHhcCCCCCC
Q 019959 68 SGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TKTSLQKWA---VEIATSGTFSAP 141 (333)
Q Consensus 68 ~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~~~l~~~~---~~i~~~~~~~~~ 141 (333)
....+.||||||+++|.......+..+|++|+|+|+++.. +|+....|. ..+...
T Consensus 119 -------------~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~------ 179 (467)
T 1r5b_A 119 -------------EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------ 179 (467)
T ss_dssp -------------SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------
T ss_pred -------------CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc------
Confidence 2467999999999999988888899999999999999862 333211222 222222
Q ss_pred CCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHc-CCCCCCcCCCccccCCCCCceeeeeccCcCHH
Q 019959 142 LASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQ-GLLPSSEELPLTESFPGGGGLIAAAKEARYDK 219 (333)
Q Consensus 142 ~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~-~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~ 219 (333)
++| +|||+||+|+...+..+-...++.+++..+++.+ |+.. ..++++++ +||++|.|++
T Consensus 180 ---------~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~-~~~~~~i~---------vSA~~g~~i~ 240 (467)
T 1r5b_A 180 ---------GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNS-KTDVKYMP---------VSAYTGQNVK 240 (467)
T ss_dssp ---------TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCH-HHHEEEEE---------CBTTTTBTTS
T ss_pred ---------CCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCc-cCCceEEe---------cccccccccc
Confidence 577 9999999999642110000112235677777776 6430 01256777 9999999998
Q ss_pred HHH
Q 019959 220 EAV 222 (333)
Q Consensus 220 ~~~ 222 (333)
+++
T Consensus 241 ~l~ 243 (467)
T 1r5b_A 241 DRV 243 (467)
T ss_dssp SCC
T ss_pred ccc
Confidence 765
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=166.37 Aligned_cols=182 Identities=20% Similarity=0.181 Sum_probs=109.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCC----CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSR----PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
+..+|+|+|..++|||||+++|++..+... ..++++..+..........+....... .+.....+.||||||+++
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~-v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFS-IRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCG-GGGTCCEEEEECCCTTSC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccc-cccccCCEEEEECCCcHH
Confidence 346999999999999999999997654332 223444433221100000000000000 001123599999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc-
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG- 171 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~---~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v- 171 (333)
|..++..+++.+|++|+|||+++ +.+++.+.. +... ++|+++|+||+|+........
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~~---------------~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRMY---------------RTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHHT---------------TCCEEEEEECGGGSTTCCCCTT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHHc---------------CCeEEEEecccccccccccccC
Confidence 99998888999999999999999 555554432 2222 689999999999974311000
Q ss_pred ---------Ccc----cHHHHHHHH---HHHcCCC--------CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 172 ---------SSG----NLVDAARQW---VEKQGLL--------PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 172 ---------~~~----~~~~~~~~~---~~~~~~~--------~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
... .+.+.+.++ ..+.++. .+...+|+++ +||++|.|++++++.+..
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~---------vSA~tG~GI~eLl~~I~~ 214 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIP---------ISAITGEGIPELLTMLMG 214 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEE---------CCTTTCTTHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEE---------EeccCCCCchhHHHHHHh
Confidence 000 001111112 2223331 0112246777 999999999999998887
Q ss_pred HHH
Q 019959 228 MLI 230 (333)
Q Consensus 228 ~l~ 230 (333)
.+-
T Consensus 215 ~~~ 217 (594)
T 1g7s_A 215 LAQ 217 (594)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-18 Score=169.80 Aligned_cols=159 Identities=20% Similarity=0.231 Sum_probs=105.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+..+|+|+|..++|||||+++|++..+......+++.+.....+.++ ...+.||||||++.|..+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~---------------~~~i~~iDTPGhe~f~~~ 67 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE---------------NGMITFLDTPGHAAFTSM 67 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT---------------SSCCCEECCCTTTCCTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC---------------CEEEEEEECCCcHHHHHH
Confidence 34589999999999999999999765544443333333322222221 235899999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+...+..+|++|+|||+++....+....| ..+... ++|+|+|+||+|+...+...+.. +
T Consensus 68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l-~~~~~~---------------~vPiIVviNKiDl~~~~~~~v~~----~- 126 (501)
T 1zo1_I 68 RARGAQATDIVVLVVAADDGVMPQTIEAI-QHAKAA---------------QVPVVVAVNKIDKPEADPDRVKN----E- 126 (501)
T ss_dssp BCSSSBSCSSEEEEEETTTBSCTTTHHHH-HHHHHT---------------TCCEEEEEECSSSSTTCCCCTTC----C-
T ss_pred HHHHHhhCCEEEEEeecccCccHHHHHHH-HHHHhc---------------CceEEEEEEeccccccCHHHHHH----H-
Confidence 88889999999999999984332222222 222222 68999999999997643222221 0
Q ss_pred HHHHHHHcCCC--CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 180 ARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 180 ~~~~~~~~~~~--~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
....++. .+...+|+++ +||++|.|++++++.+..
T Consensus 127 ----l~~~~~~~~~~~~~~~~v~---------vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 127 ----LSQYGILPEEWGGESQFVH---------VSAKAGTGIDELLDAILL 163 (501)
T ss_dssp ----CCCCCCCTTCCSSSCEEEE---------CCTTTCTTCTTHHHHTTT
T ss_pred ----HHHhhhhHHHhCCCccEEE---------EeeeeccCcchhhhhhhh
Confidence 0011111 1111356777 999999999988887753
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-17 Score=170.80 Aligned_cols=156 Identities=20% Similarity=0.239 Sum_probs=104.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC-------CCCC-------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG-------SSFS-------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~-------~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
....++|+|+|..++|||||+++|++. .+.. ....+.|.++....+.+. ....
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-------------~~~~ 359 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-------------TPTR 359 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-------------CSSC
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-------------CCCE
Confidence 345689999999999999999999863 1100 111233444433334443 3456
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCcC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKAD 162 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~D 162 (333)
.+.||||||+++|......++..+|++|+|+|+++....+. ..|+..+... ++| +|||+||+|
T Consensus 360 kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l---------------gIP~IIVVINKiD 423 (1289)
T 3avx_A 360 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV---------------GVPYIIVFLNKCD 423 (1289)
T ss_dssp EEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH---------------TCSCEEEEEECCT
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc---------------CCCeEEEEEeecc
Confidence 79999999999999888888999999999999998754433 3455555544 578 789999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR 216 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~ 216 (333)
+.... .. ...+.++++++++.+++.. +++|+++ +||++|.
T Consensus 424 Lv~d~--e~-le~i~eEi~elLk~~G~~~--~~vp~Ip---------vSAktG~ 463 (1289)
T 3avx_A 424 MVDDE--EL-LELVEMEVRELLSQYDFPG--DDTPIVR---------GSALKAL 463 (1289)
T ss_dssp TCCCH--HH-HHHHHHHHHHHHHHTTSCT--TTCCEEE---------CCSTTTT
T ss_pred cccch--hh-HHHHHHHHHHHHHhccccc--cceeEEE---------EEeccCC
Confidence 98531 10 0112356777888877521 1367888 9999993
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-17 Score=154.97 Aligned_cols=151 Identities=7% Similarity=-0.013 Sum_probs=103.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
+|+++|..++|||||+++|+ ....|+. .....+.. ....+.||||||+++|......
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~--~~~~~~~~---------------~~~~i~iiDtPGh~~f~~~~~~ 79 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSD--ITMYNNDK---------------EGRNMVFVDAHSYPKTLKSLIT 79 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESS--SEEEEECS---------------SSSEEEEEECTTTTTCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEE--eeEEEEec---------------CCeEEEEEECCChHHHHHHHHH
Confidence 89999999999999999998 2222322 22233332 2456999999999999887777
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE-EEEee-CcCCCCccCCccCcccHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-VVIGN-KADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi-ivVgN-K~Dl~~~~~r~v~~~~~~~~~ 180 (333)
.++.+|++|+|+| ++ ..+.....|+..+... ++|. |+|+| |+|+ +.. .+. ++.+++
T Consensus 80 ~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~---------------~i~~~ivvvNNK~Dl-~~~--~~~--~~~~~i 137 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQ-GLDAHTGECIIALDLL---------------GFKHGIIALTRSDST-HMH--AID--ELKAKL 137 (370)
T ss_dssp HHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHT---------------TCCEEEEEECCGGGS-CHH--HHH--HHHHHH
T ss_pred HHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHc---------------CCCeEEEEEEeccCC-CHH--HHH--HHHHHH
Confidence 8899999999999 54 4455566676666555 4676 88888 9999 431 110 011334
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCcee--eeecc---CcCHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLI--AAAKE---ARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~--~SAk~---g~~v~~~~~~l~~~l~~ 231 (333)
+++++..++ ....++. +||++ |.|++++++.+.+.+-.
T Consensus 138 ~~~l~~~~~-------------~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 138 KVITSGTVL-------------QDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp HHHTTTSTT-------------TTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-------------CceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 444333332 1223456 89999 99999999988877643
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=142.15 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=82.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
...++|+|+|.+|||||||+++|++..+. ....+..+.......+.++ ...+.||||||++++.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG---------------GFTINIIDTPGLVEAG 98 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET---------------TEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC---------------CeeEEEEECCCCCCcc
Confidence 35789999999999999999999987752 2222222223333334433 4579999999987765
Q ss_pred hhHHhhcc---------CCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 98 DCRSILYS---------QINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 98 ~~~~~~~~---------~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.....+++ .+|++|+|+|++... +... ..|+..+...... ....|+++|+||+|+...
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~----------~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK----------EIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG----------GGGGGEEEEEECTTCCCS
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch----------hhhcCEEEEEeCcccCCC
Confidence 44333332 789999999998755 4333 4677777665320 012489999999999754
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-17 Score=168.62 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=83.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCC--CC-----------------------------CCCCcccceeEEEEEEEeC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGS--SF-----------------------------SRPSQTIGCTVGVKHITYG 66 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~ 66 (333)
....++|+|+|.+++|||||+++|++.. +. .+..++++.+.....+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 3456899999999999999999997421 10 011122222222222222
Q ss_pred CCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcc---cH---HHHHHHHHHHHhcCCCCC
Q 019959 67 SSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRR---TK---TSLQKWAVEIATSGTFSA 140 (333)
Q Consensus 67 ~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~---S~---~~l~~~~~~i~~~~~~~~ 140 (333)
....+.||||||+++|......++..+|++|+|+|+++.. .+ .....++..+...
T Consensus 253 --------------~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l----- 313 (592)
T 3mca_A 253 --------------DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL----- 313 (592)
T ss_dssp --------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-----
T ss_pred --------------CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-----
Confidence 2467899999999999888888889999999999998642 11 0111122222233
Q ss_pred CCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHH-HHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 141 PLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWV-EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 141 ~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~-~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
++| +|||+||+|+.... .....++.++...+. +.+|+.. +.+++++ +||++|.|+
T Consensus 314 ----------gip~iIvviNKiDl~~~~--~~~~~~i~~el~~~l~~~~g~~~--~~~~ii~---------iSA~~G~gI 370 (592)
T 3mca_A 314 ----------GISEIVVSVNKLDLMSWS--EDRFQEIKNIVSDFLIKMVGFKT--SNVHFVP---------ISAISGTNL 370 (592)
T ss_dssp ----------SCCCEEEEEECGGGGTTC--HHHHHHHHHHHHHHHTTTSCCCG--GGEEEEE---------ECSSSCSSS
T ss_pred ----------CCCeEEEEEecccccccc--HHHHHHHHHHHHHHHHHhhCCCc--cceEEEE---------EecccCccc
Confidence 455 99999999997521 100111123344444 3345421 1356777 999999999
Q ss_pred H
Q 019959 219 K 219 (333)
Q Consensus 219 ~ 219 (333)
+
T Consensus 371 ~ 371 (592)
T 3mca_A 371 I 371 (592)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-16 Score=158.85 Aligned_cols=131 Identities=15% Similarity=0.065 Sum_probs=91.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCc----------------ccceeEEEEEEEeCCCCCCCCccCCCCCceE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ----------------TIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (333)
...+|+|+|..|+|||||+++|++......... ..++++......+. ...+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~-------------~~~~ 74 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-------------FRGH 74 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-------------ETTE
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe-------------eCCE
Confidence 446899999999999999999994332111100 11233333333332 2357
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.++||||+|+++|......+++.+|++|+|+|+++....... .|+..+... ++|+++|+||+|+
T Consensus 75 ~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~---------------~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 75 RVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL---------------GLPRMVVVTKLDK 138 (665)
T ss_dssp EEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT---------------TCCEEEEEECGGG
T ss_pred EEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc---------------cCCEEEEecCCch
Confidence 899999999999998888899999999999999887665544 444555444 5899999999998
Q ss_pred CCccCCccCcccHHHHHHHHHHHcC
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQG 188 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~ 188 (333)
. .. . .+.++++++.++
T Consensus 139 ~-~~----~----~~~~~~l~~~l~ 154 (665)
T 2dy1_A 139 G-GD----Y----YALLEDLRSTLG 154 (665)
T ss_dssp C-CC----H----HHHHHHHHHHHC
T ss_pred h-hh----H----HHHHHHHHHHhC
Confidence 7 32 1 244555655554
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-17 Score=149.34 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=84.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC-CCCCCC--------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEe
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG-SSFSRP--------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWD 89 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~D 89 (333)
.-.++|+|||++|||||||+++|++. .+.... .++.+... ..+... .++....+.+||
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~--~~~~~q-----------~~~~~~~ltv~D 82 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEA--STVEIE-----------ERGVKLRLTVVD 82 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC--------------------------CEEEEC--------------CCEEEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEee--EEEEec-----------CCCcccCcchhh
Confidence 34589999999999999999998865 443322 11222111 111111 224567899999
Q ss_pred CCCc-------hhhhhhHH-------hhccC-------------CcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCC
Q 019959 90 ISGH-------ERYKDCRS-------ILYSQ-------------INGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142 (333)
Q Consensus 90 t~G~-------e~~~~~~~-------~~~~~-------------ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~ 142 (333)
|+|. +.+..+.. .++.. +++++++.+.+. .+++.+.. ..+....
T Consensus 83 t~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~------ 153 (301)
T 2qnr_A 83 TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIH------ 153 (301)
T ss_dssp EC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHT------
T ss_pred hhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHH------
Confidence 9997 55555543 33332 334444444332 23444321 2233332
Q ss_pred CCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHH
Q 019959 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAV 222 (333)
Q Consensus 143 ~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~ 222 (333)
..+++++|+||+|+.......+. .+++.++++.++ ++|+| +||++| |++++|
T Consensus 154 -------~~~~iilV~~K~Dl~~~~e~~~~----~~~~~~~~~~~~-------~~~~e---------~Sa~~~-~v~e~f 205 (301)
T 2qnr_A 154 -------NKVNIVPVIAKADTLTLKERERL----KKRILDEIEEHN-------IKIYH---------LPDAES-DEDEDF 205 (301)
T ss_dssp -------TTSCEEEEECCGGGSCHHHHHHH----HHHHHHHHHHTT-------CCCCC---------CC----------C
T ss_pred -------hcCCEEEEEEeCCCCCHHHHHHH----HHHHHHHHHHcC-------CeEEe---------cCCccc-cccHHH
Confidence 25799999999999864211111 367788888887 45788 999999 999999
Q ss_pred HHHHHHHHH
Q 019959 223 MKFFRMLIR 231 (333)
Q Consensus 223 ~~l~~~l~~ 231 (333)
..+.+.+..
T Consensus 206 ~~l~~~i~~ 214 (301)
T 2qnr_A 206 KEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
Confidence 998887754
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.5e-17 Score=149.44 Aligned_cols=135 Identities=15% Similarity=0.077 Sum_probs=108.3
Q ss_pred HHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEE
Q 019959 36 SLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVH 114 (333)
Q Consensus 36 SLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~ 114 (333)
+|+.+|+.+.|. ..+.+|+|..+. ..+..+ + .+.|||+ +++|..+++.+++++|++|+||
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~-------------~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~ 92 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDET-------------G---SGVIENV--LHRKNLLTKPHVANVDQVILVV 92 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCS-------------S---SEEEEEE--CCCSCEETTTTEESCCEEEEEE
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCC-------------C---eEEEEEE--ccccceeeccccccCCEEEEEE
Confidence 688999999998 889999996554 222111 1 5899999 9999999999999999999999
Q ss_pred ECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCC
Q 019959 115 DLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS 193 (333)
Q Consensus 115 D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~ 193 (333)
|++++. ++..+..|+..+... ++|++||+||+||.+. +. .++++++++.++..
T Consensus 93 D~~~~~~s~~~l~~~l~~~~~~---------------~~piilv~NK~DL~~~--~~------v~~~~~~~~~~~~~--- 146 (301)
T 1u0l_A 93 TVKMPETSTYIIDKFLVLAEKN---------------ELETVMVINKMDLYDE--DD------LRKVRELEEIYSGL--- 146 (301)
T ss_dssp CSSTTCCCHHHHHHHHHHHHHT---------------TCEEEEEECCGGGCCH--HH------HHHHHHHHHHHTTT---
T ss_pred eCCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEeHHHcCCc--hh------HHHHHHHHHHHhhh---
Confidence 999998 799999999987653 6899999999999764 21 14467777776521
Q ss_pred cCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 194 EELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 194 ~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
++|+| |||++|.|++++|..+.
T Consensus 147 --~~~~~---------~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 147 --YPIVK---------TSAKTGMGIEELKEYLK 168 (301)
T ss_dssp --SCEEE---------CCTTTCTTHHHHHHHHS
T ss_pred --CcEEE---------EECCCCcCHHHHHHHhc
Confidence 35777 99999999999887664
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=146.06 Aligned_cols=133 Identities=13% Similarity=0.106 Sum_probs=98.7
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQ----------RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~----------~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
.+.+.||||+|+++++.++..+|++++++|+|||+++ ..+|+++..|+..+..... ..+
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~-----------~~~ 284 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW-----------LRT 284 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT-----------CSS
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc-----------CCC
Confidence 4889999999999999999999999999999999999 8899999999999987632 247
Q ss_pred CcEEEEeeCcCCCCccCC-ccCc---------------------cc--HHHHHHHHHHH-----cCCC-CCCcCCCcccc
Q 019959 152 VPYVVIGNKADVAAKEGT-RGSS---------------------GN--LVDAARQWVEK-----QGLL-PSSEELPLTES 201 (333)
Q Consensus 152 ~PiivVgNK~Dl~~~~~r-~v~~---------------------~~--~~~~~~~~~~~-----~~~~-~~~~~~p~~E~ 201 (333)
+|+||||||+||...... .++. ++ ..+++..|+.. .... .-...+.+++
T Consensus 285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~- 363 (402)
T 1azs_C 285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF- 363 (402)
T ss_dssp CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE-
T ss_pred CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE-
Confidence 999999999998643110 0110 11 14566666422 1000 0000134556
Q ss_pred CCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 202 FPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 202 ~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
|||+++.||+++|..+.+.+++..+
T Consensus 364 --------TSA~d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 364 --------TCAVDTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------EEeecCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887655
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=153.96 Aligned_cols=116 Identities=21% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC--CCC------C------------CCCcccceeEEEEEEEeCCCCCCCCccCC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG--SSF------S------------RPSQTIGCTVGVKHITYGSSGSSSNSIKG 77 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~ 77 (333)
.....+|+|+|..|+|||||+++|+.. .+. . ....|+... ...+.+
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~------------ 74 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW------------ 74 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE------------
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE------------
Confidence 456689999999999999999999832 110 0 111222211 122222
Q ss_pred CCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEE
Q 019959 78 DSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 157 (333)
Q Consensus 78 ~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivV 157 (333)
..+.++||||||+.+|......+++.+|++|+|+|+++..++.....|.. +... ++|+++|
T Consensus 75 ---~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---------------~~p~ivv 135 (691)
T 1dar_A 75 ---KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---------------KVPRIAF 135 (691)
T ss_dssp ---TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---------------TCCEEEE
T ss_pred ---CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---------------CCCEEEE
Confidence 25789999999999999999999999999999999999998888777764 3333 6899999
Q ss_pred eeCcCCCCc
Q 019959 158 GNKADVAAK 166 (333)
Q Consensus 158 gNK~Dl~~~ 166 (333)
+||+|+...
T Consensus 136 iNKiD~~~~ 144 (691)
T 1dar_A 136 ANKMDKTGA 144 (691)
T ss_dssp EECTTSTTC
T ss_pred EECCCcccC
Confidence 999999754
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-16 Score=146.52 Aligned_cols=129 Identities=11% Similarity=0.119 Sum_probs=92.9
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQ----------RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLP 151 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~----------~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 151 (333)
.+.+.||||+|++.++..+..++++++++|||||+++ ..++.+...|+..+..... ..+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~-----------~~~ 268 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV-----------FSN 268 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG-----------GTT
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh-----------hCC
Confidence 4789999999999999999999999999999999999 7789999999999876532 137
Q ss_pred CcEEEEeeCcCCCCcc--------------CCccCcccHHHHHHHHHHHc--CCCCC--CcCCCccccCCCCCceeeeec
Q 019959 152 VPYVVIGNKADVAAKE--------------GTRGSSGNLVDAARQWVEKQ--GLLPS--SEELPLTESFPGGGGLIAAAK 213 (333)
Q Consensus 152 ~PiivVgNK~Dl~~~~--------------~r~v~~~~~~~~~~~~~~~~--~~~~~--~~~~p~~E~~~~~~~~~~SAk 213 (333)
+|+||||||+||..+. +..++ .+++..++... .+... ...+.+++ |||+
T Consensus 269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~----~~e~~~~~~~~f~~l~~~~~~~~~~~~~---------tSA~ 335 (362)
T 1zcb_A 269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC----LRDVQKFLVECFRGKRRDQQQRPLYHHF---------TTAI 335 (362)
T ss_dssp SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTC----HHHHHHHHHHHHHTTCSSCC--CCEEEE---------CCTT
T ss_pred CCEEEEEEChhhhhhhccccchhhcCccccCCCCC----HHHHHHHHHHHHHHhhcccCCCceEEEE---------EecC
Confidence 9999999999996431 11133 46777776321 11110 11255667 9999
Q ss_pred cCcCHHHHHHHHHHHHHHHHh
Q 019959 214 EARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 214 ~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++.||+++|+.+.+.+++..+
T Consensus 336 d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 336 NTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999888765
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=147.85 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=75.9
Q ss_pred EEEEEeCCCchhh-------------hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 84 FVELWDISGHERY-------------KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 84 ~l~i~Dt~G~e~~-------------~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
.+.||||||..++ ..+...|+.++|++|+|+|.++..... ..|+..+..... .
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~------------~ 202 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDP------------S 202 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCT------------T
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcc------------c
Confidence 5889999997776 667778899999999999987654332 234444444321 2
Q ss_pred CCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 151 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+.|+|+|+||+|+.+.. ... .+.++.++..+ .++|++ +|++++.++++.+........
T Consensus 203 ~~~~i~V~nK~Dl~~~~--~~~----~~~~~~~~~~~-------~~~~~~---------v~~~s~~~i~~~~~~~~~~~~ 260 (360)
T 3t34_A 203 GDRTFGVLTKIDLMDKG--TDA----VEILEGRSFKL-------KYPWVG---------VVNRSQADINKNVDMIAARKR 260 (360)
T ss_dssp CTTEEEEEECGGGCCTT--CCS----HHHHTTSSSCC-------SSCCEE---------ECCCCHHHHHTTCCHHHHHHH
T ss_pred CCCEEEEEeCCccCCCc--ccH----HHHHcCccccc-------cCCeEE---------EEECChHHhccCCCHHHHHHH
Confidence 57999999999998652 221 12222211111 256777 999999888776665555444
Q ss_pred HHHhcc
Q 019959 231 RRRYFS 236 (333)
Q Consensus 231 ~~~~~~ 236 (333)
+..++.
T Consensus 261 e~~ff~ 266 (360)
T 3t34_A 261 EREYFS 266 (360)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 444443
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=138.26 Aligned_cols=123 Identities=21% Similarity=0.190 Sum_probs=80.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...++|+|+|.+|||||||+|+|++..+.... .+.+.+.......+. ...+.+.||||||.+++..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~-------------~~~~~l~iiDTpG~~~~~~ 102 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRS-------------RAGFTLNIIDTPGLIEGGY 102 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEE-------------ETTEEEEEEECCCSEETTE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEe-------------eCCeEEEEEECCCCCCCcc
Confidence 44689999999999999999999987753211 111222222222222 2356799999999866542
Q ss_pred hH-------Hh--hccCCcEEEEEEECCCcccHHHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 99 CR-------SI--LYSQINGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 99 ~~-------~~--~~~~ad~vIlV~D~s~~~S~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.. .. ....+|++|+|||++.. ++... ..|+..+...... ....|+++|+||+|+...
T Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~----------~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 103 INDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGK----------GIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCG----------GGGGGEEEEEECCSCCCG
T ss_pred chHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCc----------ccccCEEEEEECcccCCc
Confidence 21 11 23479999999999764 34433 4677777655210 012699999999999765
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-15 Score=152.52 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=54.1
Q ss_pred EEEEEeCCCchh---hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 84 FVELWDISGHER---YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 84 ~l~i~Dt~G~e~---~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
.+.||||||... .......++..+|++|+|+|+++..+...+..|...+... +.|+++|+||
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~---------------~~~iiiVlNK 239 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR---------------GLTVFFLVNA 239 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS---------------CCCEEEEEEC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh---------------CCCEEEEEEC
Confidence 489999999655 3445556789999999999999998888887776555333 4689999999
Q ss_pred cCCCCc
Q 019959 161 ADVAAK 166 (333)
Q Consensus 161 ~Dl~~~ 166 (333)
+|+...
T Consensus 240 ~Dl~~~ 245 (695)
T 2j69_A 240 WDQVRE 245 (695)
T ss_dssp GGGGGG
T ss_pred cccccc
Confidence 999754
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=152.06 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=87.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCC-------------------CCcccceeEEEEEEEeCCCCCCCCccCCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS-FSR-------------------PSQTIGCTVGVKHITYGSSGSSSNSIKGDS 79 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (333)
...+|+|+|.+|+|||||+++|+...- ... ...+.|.++......+.
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~------------- 78 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP------------- 78 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEE-------------
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEE-------------
Confidence 347999999999999999999995311 100 00122222222222221
Q ss_pred CceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
...+.+.||||||+++|......++..+|++|+|+|+++...... ..++..+.. .++|+++|+|
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~---------------~~ipiivviN 142 (529)
T 2h5e_A 79 YHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL---------------RDTPILTFMN 142 (529)
T ss_dssp ETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT---------------TTCCEEEEEE
T ss_pred ECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH---------------cCCCEEEEEc
Confidence 235789999999999999888889999999999999998754332 223333322 2689999999
Q ss_pred CcCCCCccCCccCcccHHHHHHHHHHHcCC
Q 019959 160 KADVAAKEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 160 K~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
|+|+..... .+...++.+.++.
T Consensus 143 K~Dl~~~~~--------~~~~~~i~~~l~~ 164 (529)
T 2h5e_A 143 KLDRDIRDP--------MELLDEVENELKI 164 (529)
T ss_dssp CTTSCCSCH--------HHHHHHHHHHHCC
T ss_pred CcCCccccH--------HHHHHHHHHHhCC
Confidence 999976421 1345566666664
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-14 Score=146.96 Aligned_cols=125 Identities=15% Similarity=0.118 Sum_probs=87.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC--CCCC-----------CCC---cccceeEEE--EEEEeCCCCCCCCccCCCC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG--SSFS-----------RPS---QTIGCTVGV--KHITYGSSGSSSNSIKGDS 79 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~-----------~~~---~t~~~~~~~--~~~~~~~~~~~~~~i~~~~ 79 (333)
.....+|+|+|..|+|||||+++|+.. .+.. .+. ...+.++.. ..+.+.+. ..+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~--------~~~ 78 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGM--------AKQ 78 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCc--------ccc
Confidence 455679999999999999999999843 1111 000 011222222 22333210 012
Q ss_pred CceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
+..+.++||||||+.+|......+++.+|++|+|+|+++....+....|.. +... ++|+++|+|
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~~---------------~ip~ilviN 142 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANKY---------------KVPRIAFVN 142 (704)
T ss_pred CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHHc---------------CCCEEEEEe
Confidence 455889999999999999988889999999999999999877766655643 3332 689999999
Q ss_pred CcCCCCc
Q 019959 160 KADVAAK 166 (333)
Q Consensus 160 K~Dl~~~ 166 (333)
|+|+...
T Consensus 143 KiD~~~~ 149 (704)
T 2rdo_7 143 KMDRMGA 149 (704)
T ss_pred CCCcccc
Confidence 9998754
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=149.33 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=85.9
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHc--CCCCC-----------CC-----CcccceeEEEEEEEeCCCCCCCCccCCC
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVK--GSSFS-----------RP-----SQTIGCTVGVKHITYGSSGSSSNSIKGD 78 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~--~~~~~-----------~~-----~~t~~~~~~~~~~~~~~~~~~~~~i~~~ 78 (333)
+.....+|+|+|.+|+|||||+++|+. +.+.. .+ ...+........+.+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~------------- 72 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW------------- 72 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-------------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-------------
Confidence 345678999999999999999999994 22210 00 001111111122222
Q ss_pred CCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEe
Q 019959 79 SERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 158 (333)
Q Consensus 79 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVg 158 (333)
..+.++||||||+.+|......+++.+|++|+|+|+++..++.....|.. +... ++|+++|+
T Consensus 73 --~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---------------~~p~ilvi 134 (693)
T 2xex_A 73 --EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---------------GVPRIVFV 134 (693)
T ss_dssp --TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---------------TCCEEEEE
T ss_pred --CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---------------CCCEEEEE
Confidence 24789999999999998888889999999999999999988887766654 4443 58999999
Q ss_pred eCcCCCCc
Q 019959 159 NKADVAAK 166 (333)
Q Consensus 159 NK~Dl~~~ 166 (333)
||+|+...
T Consensus 135 NK~Dl~~~ 142 (693)
T 2xex_A 135 NKMDKLGA 142 (693)
T ss_dssp ECTTSTTC
T ss_pred ECCCcccc
Confidence 99999764
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=137.79 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=47.3
Q ss_pred EEEEEEeCCCchh-------------hhhhHHhhccCCcEEEEEEECCCcccH-HHHHHHHHHHHhcCCCCCCCCCCCCC
Q 019959 83 FFVELWDISGHER-------------YKDCRSILYSQINGVIFVHDLSQRRTK-TSLQKWAVEIATSGTFSAPLASGGPG 148 (333)
Q Consensus 83 ~~l~i~Dt~G~e~-------------~~~~~~~~~~~ad~vIlV~D~s~~~S~-~~l~~~~~~i~~~~~~~~~~~~~~~~ 148 (333)
..+.||||||..+ +......++..+|++|+|+|.++.... .....++..+..
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-------------- 196 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-------------- 196 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--------------
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--------------
Confidence 4699999999643 556667788999999999998543311 111123333322
Q ss_pred CCCCcEEEEeeCcCCCCc
Q 019959 149 GLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 149 ~~~~PiivVgNK~Dl~~~ 166 (333)
.+.|+++|+||+|+...
T Consensus 197 -~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 197 -EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp -SCSSEEEEEECTTSSCS
T ss_pred -CCCcEEEEEcCcccCCc
Confidence 26899999999999865
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-15 Score=143.45 Aligned_cols=111 Identities=16% Similarity=0.142 Sum_probs=64.4
Q ss_pred EEEEEEeCCCch-------------hhhhhHHhhccCCcEEEE-EEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 019959 83 FFVELWDISGHE-------------RYKDCRSILYSQINGVIF-VHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPG 148 (333)
Q Consensus 83 ~~l~i~Dt~G~e-------------~~~~~~~~~~~~ad~vIl-V~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~ 148 (333)
..+.||||||.. .+..+...|+..++.+|+ |.|++....-.....++..+..
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~-------------- 195 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP-------------- 195 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--------------
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--------------
Confidence 469999999952 455666677776665555 5565543222222234444322
Q ss_pred CCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 149 GLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 149 ~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.+.|+++|+||+|+.+... . +..+.+......-....++++ +||++|.|++++++.+.+
T Consensus 196 -~~~~~i~V~NK~Dl~~~~~-~---------~~~~~~~~~~~l~~~~~~v~~---------~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 196 -QGQRTIGVITKLDLMDEGT-D---------ARDVLENKLLPLRRGYIGVVN---------RSQKDIDGKKDITAALAA 254 (353)
T ss_dssp -TCTTEEEEEECGGGSCTTC-C---------CHHHHTTCSSCCTTCEEECCC---------CCHHHHHTTCCHHHHHHH
T ss_pred -CCCceEEEeccccccCcch-h---------HHHHHhCCcccccCCceEEEe---------CCcccccccccHHHHHHH
Confidence 2689999999999986421 1 111221110000000124566 999999999888888765
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-15 Score=143.31 Aligned_cols=160 Identities=13% Similarity=0.162 Sum_probs=83.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------CcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRP--------SQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDI 90 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt 90 (333)
.-.++|+|||++|||||||+++|++..+.... ..+++.+ .+.+. -...+....+.+||+
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~----~i~~v---------~q~~~~~~~Ltv~Dt 95 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVE----QSKVL---------IKEGGVQLLLTIVDT 95 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEE----EEECC---------------CEEEEEEEC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeee----eEEEE---------EecCCcccceeeeec
Confidence 34579999999999999999999987653211 1222211 11111 001244567999999
Q ss_pred CCchhhh-------hh------------------HHhhccCCcEEEEEEECCCc-ccHHHHH-HHHHHHHhcCCCCCCCC
Q 019959 91 SGHERYK-------DC------------------RSILYSQINGVIFVHDLSQR-RTKTSLQ-KWAVEIATSGTFSAPLA 143 (333)
Q Consensus 91 ~G~e~~~-------~~------------------~~~~~~~ad~vIlV~D~s~~-~S~~~l~-~~~~~i~~~~~~~~~~~ 143 (333)
+|...+. .+ ...++.++++.+++|+.+.. .++..+. .|+..+..
T Consensus 96 ~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~--------- 166 (418)
T 2qag_C 96 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--------- 166 (418)
T ss_dssp C-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT---------
T ss_pred hhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc---------
Confidence 9976541 11 12345566665666666543 3555553 57766632
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHH
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 223 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~ 223 (333)
++|+|+|+||+|+... +++. ...+.+.+++..++ +++++ +||+++.++++++.
T Consensus 167 -------~v~iIlVinK~Dll~~--~ev~--~~k~~i~~~~~~~~-------i~~~~---------~sa~~~~~v~~~~~ 219 (418)
T 2qag_C 167 -------KVNIIPLIAKADTLTP--EECQ--QFKKQIMKEIQEHK-------IKIYE---------FPETDDEEENKLVK 219 (418)
T ss_dssp -------TSEEEEEEESTTSSCH--HHHH--HHHHHHHHHHHHHT-------CCCCC---------CC------------
T ss_pred -------cCcEEEEEEcccCccH--HHHH--HHHHHHHHHHHHcC-------CeEEe---------CCCCCCcCHHHHHH
Confidence 5899999999999764 2222 11256777777777 46777 99999988877655
Q ss_pred HHHH
Q 019959 224 KFFR 227 (333)
Q Consensus 224 ~l~~ 227 (333)
.+..
T Consensus 220 ~l~~ 223 (418)
T 2qag_C 220 KIKD 223 (418)
T ss_dssp ----
T ss_pred HHHh
Confidence 5543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-14 Score=136.60 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=106.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----hhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----YKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~~~ 98 (333)
.|+|||++|||||||+++|++........+..+.......+.++ ....+.+||++|..+ +..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~--------------~~~~~~l~DtpGli~~a~~~~~ 224 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS--------------EEERFTLADIPGIIEGASEGKG 224 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS--------------SSCEEEEEECCCCCCCGGGSCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec--------------CcceEEEEeccccccchhhhhh
Confidence 58999999999999999999764311111111222223334432 134689999999632 211
Q ss_pred hHHh---hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 99 CRSI---LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 99 ~~~~---~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+... .+..++++++|+|++ ...+.++..|..++..... .....|.+||+||+|+....
T Consensus 225 L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~----------aL~~~P~ILVlNKlDl~~~~-------- 285 (416)
T 1udx_A 225 LGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDP----------ALLRRPSLVALNKVDLLEEE-------- 285 (416)
T ss_dssp SCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCH----------HHHHSCEEEEEECCTTSCHH--------
T ss_pred hhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhH----------HhhcCCEEEEEECCChhhHH--------
Confidence 2112 245799999999999 6778888888888766521 00147899999999997530
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..+...++++..+ +++++ +||+++.|++++++.+.+.+..
T Consensus 286 ~~~~l~~~l~~~g-------~~vi~---------iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 286 AVKALADALAREG-------LAVLP---------VSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHTTT-------SCEEE---------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-------CeEEE---------EECCCccCHHHHHHHHHHHHHh
Confidence 1234444444434 45666 9999999999999999887754
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=139.96 Aligned_cols=98 Identities=17% Similarity=0.121 Sum_probs=49.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--cccceeEEEEEEEeCCCCCCCCcc-------CCCCCceEEEEEEeCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPS--QTIGCTVGVKHITYGSSGSSSNSI-------KGDSERDFFVELWDISG 92 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~~l~i~Dt~G 92 (333)
+||+|||.+|||||||+|+|++........ .|+........+....+...-... .......+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876432222 233333322222110000000000 00012257899999999
Q ss_pred chh----hhhhHH---hhccCCcEEEEEEECCCc
Q 019959 93 HER----YKDCRS---ILYSQINGVIFVHDLSQR 119 (333)
Q Consensus 93 ~e~----~~~~~~---~~~~~ad~vIlV~D~s~~ 119 (333)
..+ +..+.. .+++.+|++|+|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 233333 246899999999999986
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=148.31 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=88.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC------------CCCC------CCCcccceeEEEEEEEeCCCCCCCCcc-CCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG------------SSFS------RPSQTIGCTVGVKHITYGSSGSSSNSI-KGDS 79 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~------------~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~~i-~~~~ 79 (333)
....+|+|+|..|+|||||+++|+.. .+.. ....|+........+..... ....+ ...+
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~--~~~~i~~~~~ 94 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDE--DVKEIKQKTD 94 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHH--HHHHCSSCCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccc--cccccccccc
Confidence 45679999999999999999999853 1110 01112222222222221000 00000 0012
Q ss_pred CceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEee
Q 019959 80 ERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 159 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgN 159 (333)
+..+.++||||||+.+|......+++.+|++|+|||+++..+++....|.... .. ++|+++|+|
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~---------------~~p~ilviN 158 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-GE---------------RIKPVVVIN 158 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-HT---------------TCEEEEEEE
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-Hc---------------CCCeEEEEE
Confidence 55789999999999999999999999999999999999999998877776543 22 589999999
Q ss_pred CcCCCC
Q 019959 160 KADVAA 165 (333)
Q Consensus 160 K~Dl~~ 165 (333)
|+|+..
T Consensus 159 K~D~~~ 164 (842)
T 1n0u_A 159 KVDRAL 164 (842)
T ss_dssp CHHHHH
T ss_pred CCCcch
Confidence 999874
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-14 Score=139.84 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=85.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCcccceeEEEEEEEeCCC-----CCC-----CCccCCC------
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSF---SRPSQTIGCTVGVKHITYGSS-----GSS-----SNSIKGD------ 78 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~-----~~~-----~~~i~~~------ 78 (333)
.....+|+|+|.+|||||||+|+|++..+. ....++... ...+..+.. +.+ ...+...
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~---~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC---FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS---EEEEECCSSSEEECCC------------------C
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce---EEEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 345689999999999999999999988763 222322211 111111100 000 0000000
Q ss_pred --CC---------ceEEEEEEeCCCchh-----------hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcC
Q 019959 79 --SE---------RDFFVELWDISGHER-----------YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSG 136 (333)
Q Consensus 79 --~~---------~~~~l~i~Dt~G~e~-----------~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~ 136 (333)
.+ ....+.||||||... |......++..+|++|+|+|+++.........|+..+...
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~- 217 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH- 217 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-
Confidence 00 002588999999764 5566677788999999999999876666667777776443
Q ss_pred CCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 137 TFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 137 ~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
+.|+++|+||+|+...
T Consensus 218 --------------~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 --------------EDKIRVVLNKADMVET 233 (550)
T ss_dssp --------------GGGEEEEEECGGGSCH
T ss_pred --------------CCCEEEEEECCCccCH
Confidence 5799999999999864
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=126.43 Aligned_cols=165 Identities=15% Similarity=0.052 Sum_probs=95.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEE------------EEEEEeCCCCCCCCccCC------C-CCc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVG------------VKHITYGSSGSSSNSIKG------D-SER 81 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~------------~~~~~~~~~~~~~~~i~~------~-~~~ 81 (333)
..+|+|+|.+|||||||+++|+...........+..++. ...+.++.++. ..... . ...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKE--CHLDAHMIYHRLKKFS 107 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTC--SSCCHHHHHTTGGGGT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCce--eecccHHHHHHHHhcC
Confidence 459999999999999999999865221111111111110 01122221110 00000 0 123
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.||||+|+-... ..+....+++|+|+|+++.... ...+... . +.|+++|+||+
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---------------~~~~iiv~NK~ 164 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---------------RVADLIVINKV 164 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---------------HTCSEEEEECG
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh---h---------------hcCCEEEEecc
Confidence 4568999999951111 0112367899999999876431 1112211 1 46899999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
|+... +.+. .+++.++++.++. .+++++ +||++|.|++++++.+.+.+.
T Consensus 165 Dl~~~--~~~~----~~~~~~~~~~~~~-----~~~i~~---------~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 165 ALAEA--VGAD----VEKMKADAKLINP-----RAKIIE---------MDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp GGHHH--HTCC----HHHHHHHHHHHCT-----TSEEEE---------CBTTTTBTHHHHHHHHHHHHC
T ss_pred cCCcc--hhhH----HHHHHHHHHHhCC-----CCeEEE---------eecCCCCCHHHHHHHHHHHHH
Confidence 99643 1122 2556666666542 246777 999999999999998887654
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-13 Score=127.79 Aligned_cols=95 Identities=17% Similarity=0.104 Sum_probs=55.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--cccceeEEEEEEEeCCCCC--CCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPS--QTIGCTVGVKHITYGSSGS--SSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
++|+|||.+|||||||+|+|++..+..... .|++.+. ..+.+++..- -.............++||||+|..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 699999999999999999999876433222 2433333 2333321000 000000000002569999999987654
Q ss_pred ----hhHH---hhccCCcEEEEEEECCC
Q 019959 98 ----DCRS---ILYSQINGVIFVHDLSQ 118 (333)
Q Consensus 98 ----~~~~---~~~~~ad~vIlV~D~s~ 118 (333)
.+.. .+++.+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2222 24789999999999987
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-16 Score=137.89 Aligned_cols=168 Identities=13% Similarity=0.077 Sum_probs=95.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEE------------EEEEEeCCCCCCC-------CccCCCCC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVG------------VKHITYGSSGSSS-------NSIKGDSE 80 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~------------~~~~~~~~~~~~~-------~~i~~~~~ 80 (333)
..++|+|+|++|||||||+++|+...+...+..+++.++. .+.+.++.++... ..+.....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 3479999999999999999999977665555566666554 2334333111000 00000001
Q ss_pred ceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 81 ~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
....+.+.|++|.-.. ...+-...+.++.+.|......... ... .+ . ..|+++|+||
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~-~~--~---------------~~~~iiv~NK 173 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHP-GI--M---------------KTADLIVINK 173 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCH-HH--H---------------TTCSEEEEEC
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhh-hH--h---------------hcCCEEEEec
Confidence 1123556666662100 0011123445566666532211100 000 11 1 3578999999
Q ss_pred cCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 161 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 161 ~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+|+... +.+. .+++.++++.++. .+++++ +||++|.|++++|+.+.+.+.
T Consensus 174 ~Dl~~~--~~~~----~~~~~~~~~~~~~-----~~~~~~---------~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 174 IDLADA--VGAD----IKKMENDAKRINP-----DAEVVL---------LSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp GGGHHH--HTCC----HHHHHHHHHHHCT-----TSEEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cccCch--hHHH----HHHHHHHHHHhCC-----CCeEEE---------EEecCCCCHHHHHHHHHHHHH
Confidence 999753 1222 3666777776542 256777 999999999999999887664
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=123.49 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=55.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CC-CCcccceeEEEEEEEeCCCC--CCCCccCCCC----CceEEEEEEeCCCc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SR-PSQTIGCTVGVKHITYGSSG--SSSNSIKGDS----ERDFFVELWDISGH 93 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~--~~~~~i~~~~----~~~~~l~i~Dt~G~ 93 (333)
++|+|||.+|||||||+|+|++.... .. ...|+..+... ..++... .-...+.... -....++||||+|.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV--VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE--EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee--EecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 58999999999999999999976422 11 12233333322 2221000 0000000000 02356999999997
Q ss_pred hhhh----hh---HHhhccCCcEEEEEEECCC
Q 019959 94 ERYK----DC---RSILYSQINGVIFVHDLSQ 118 (333)
Q Consensus 94 e~~~----~~---~~~~~~~ad~vIlV~D~s~ 118 (333)
.++. .+ ....++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6542 12 2235789999999999986
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-13 Score=129.69 Aligned_cols=111 Identities=18% Similarity=0.051 Sum_probs=69.9
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.||||+|.... ....+..+|++|+|+|.+..+.+..+..+ ....|+++|+||+
T Consensus 171 ~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------------------~~~~p~ivVlNK~ 227 (355)
T 3p32_A 171 GFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKKG--------------------VLELADIVVVNKA 227 (355)
T ss_dssp TCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCTT--------------------SGGGCSEEEEECC
T ss_pred CCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHHh--------------------HhhcCCEEEEECC
Confidence 466999999994321 22345889999999998876554332211 1246899999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHc---CCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQ---GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~---~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
|+..... . .....++...+ +.......+|+++ +||++|.|++++++.+.+.+..
T Consensus 228 Dl~~~~~--~-----~~~~~~l~~~l~~~~~~~~~~~~~vi~---------iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 228 DGEHHKE--A-----RLAARELSAAIRLIYPREALWRPPVLT---------MSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CGGGHHH--H-----HHHHHHHHHHHHHHSTTCCSCCCCEEE---------EBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCcChhH--H-----HHHHHHHHHHHhhccccccCCCCceEE---------EEcCCCCCHHHHHHHHHHHHHH
Confidence 9975311 0 11222333322 1100000256777 9999999999999998877643
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=7e-12 Score=119.06 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=78.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh--
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY-- 96 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~-- 96 (333)
.+..+|+|||.||||||||+|+|++........+..+.+.....+.++ ...++|+||||.-+.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~---------------~~~i~l~D~pGl~~~a~ 134 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK---------------GAKIQMLDLPGIIDGAK 134 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET---------------TEEEEEEECGGGCCC--
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC---------------CcEEEEEeCCCccCCch
Confidence 445699999999999999999999876554444555666666677765 457899999994221
Q ss_pred --hhh---HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 97 --KDC---RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 97 --~~~---~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
..+ .-..++.+|++++|+|++++. ........++..... .....|.+++.||+|..
T Consensus 135 ~~~~~g~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~----------~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 135 DGRGRGKQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGI----------RLNKTPPDILIKKKEKG 195 (376)
T ss_dssp ---CHHHHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTE----------EETCCCCCEEEEECSSS
T ss_pred hhhHHHHHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhH----------hhccCChhhhhhHhhhh
Confidence 111 122467899999999999864 333333344433311 01245667777888753
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=122.62 Aligned_cols=115 Identities=18% Similarity=0.256 Sum_probs=81.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC------------------CCCC--CCcccceeEEEEEEEeCCCCCCCCccCCCCCce
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS------------------SFSR--PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~------------------~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 82 (333)
+|+|||..++|||||+.+|+... +... ....-|+++....+.+. -+.
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-------------~~~ 99 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-------------YRD 99 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-------------ETT
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-------------ECC
Confidence 89999999999999999997211 1100 00111222222222221 235
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
+.++|+||||+.+|..-....++-+|++|+|+|+...-.-+....|.. +.+. ++|+|++.||+|
T Consensus 100 ~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~~---------------~lp~i~fINK~D 163 (548)
T 3vqt_A 100 RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRMR---------------ATPVMTFVNKMD 163 (548)
T ss_dssp EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHHT---------------TCCEEEEEECTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHHh---------------CCceEEEEeccc
Confidence 789999999999999988889999999999999999887777666744 4444 689999999999
Q ss_pred CCCc
Q 019959 163 VAAK 166 (333)
Q Consensus 163 l~~~ 166 (333)
....
T Consensus 164 r~~a 167 (548)
T 3vqt_A 164 REAL 167 (548)
T ss_dssp SCCC
T ss_pred chhc
Confidence 8654
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.7e-12 Score=112.42 Aligned_cols=114 Identities=12% Similarity=-0.011 Sum_probs=67.8
Q ss_pred EEEEEEeCCCchhhhhhHH------hhccCCcEEEEEEECCCcccHHHHHH---HHHHHHhcCCCCCCCCCCCCCCCCCc
Q 019959 83 FFVELWDISGHERYKDCRS------ILYSQINGVIFVHDLSQRRTKTSLQK---WAVEIATSGTFSAPLASGGPGGLPVP 153 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~------~~~~~ad~vIlV~D~s~~~S~~~l~~---~~~~i~~~~~~~~~~~~~~~~~~~~P 153 (333)
+.+.||||+|+..+..... ..+.. +++|+|+|++...+...+.. +....... .++|
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--------------~~~p 173 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--------------LGAT 173 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--------------HTSC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--------------cCCC
Confidence 5699999999876543321 23456 89999999875544333221 11111111 1579
Q ss_pred EEEEeeCcCCCCccCCccCcccHHH---HHHH---------------------HHHHcCCCCCCcCCCccccCCCCCcee
Q 019959 154 YVVIGNKADVAAKEGTRGSSGNLVD---AARQ---------------------WVEKQGLLPSSEELPLTESFPGGGGLI 209 (333)
Q Consensus 154 iivVgNK~Dl~~~~~r~v~~~~~~~---~~~~---------------------~~~~~~~~~~~~~~p~~E~~~~~~~~~ 209 (333)
+++|+||+|+.... .+. ++.+ +... ++++++. .+++++
T Consensus 174 ~~iv~NK~D~~~~~--~~~--~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~--------- 235 (262)
T 1yrb_A 174 TIPALNKVDLLSEE--EKE--RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP-----PVRVLY--------- 235 (262)
T ss_dssp EEEEECCGGGCCHH--HHH--HHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC-----CCCCEE---------
T ss_pred eEEEEecccccccc--cHH--HHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC-----cccceE---------
Confidence 99999999997541 110 0001 0001 1233332 135666
Q ss_pred eeeccCcCHHHHHHHHHHHH
Q 019959 210 AAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 210 ~SAk~g~~v~~~~~~l~~~l 229 (333)
+||++|.|++++++.+.+.+
T Consensus 236 ~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 236 LSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EEecCcccHHHHHHHHHHHh
Confidence 99999999999998887665
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-12 Score=119.26 Aligned_cols=109 Identities=11% Similarity=0.061 Sum_probs=61.5
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.|+||+|..... ......+|++++|+|++.....+.+.. .+ ...|.++|+||+
T Consensus 166 ~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----------------l~~~~ivVlNK~ 222 (349)
T 2www_A 166 GYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI-----------------IEMADLVAVTKS 222 (349)
T ss_dssp TCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC--------------------------------CCSCSEEEECCC
T ss_pred CCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----------------HhcCCEEEEeee
Confidence 3568999999953211 234678999999999987643322211 11 146789999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCCCC---CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLLPS---SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~---~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
|+..... . ......+...+..... ....+++. +||++|.|++++++.+.+.+
T Consensus 223 Dl~~~~~--~-----~~~~~~l~~~l~~~~~~a~~~~~~vi~---------iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 223 DGDLIVP--A-----RRIQAEYVSALKLLRKRSQVWKPKVIR---------ISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp SGGGHHH--H-----HHHHHHHHHHHTTCC-----CCCEEEE---------CCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCchh--H-----HHHHHHHHHHHHhcCccccCCCceEEE---------EecCCCCCHHHHHHHHHHHH
Confidence 9974310 0 0122333332221100 00134555 99999999999998887765
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=125.42 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=66.6
Q ss_pred EEEEeCCCchh-------------hhhhHHhhc-cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019959 85 VELWDISGHER-------------YKDCRSILY-SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGL 150 (333)
Q Consensus 85 l~i~Dt~G~e~-------------~~~~~~~~~-~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 150 (333)
+.|+||||... ...+...|+ ..+|++++|+|+++...-.....++..+...
T Consensus 152 L~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~--------------- 216 (772)
T 3zvr_A 152 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--------------- 216 (772)
T ss_dssp EEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTT---------------
T ss_pred eEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhc---------------
Confidence 77999999322 333444444 5789999999998765433333344444333
Q ss_pred CCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 151 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 151 ~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.|+|+|.||+|+...... . ..+.. ...... ....+++. +||++|.|++++++.+.++
T Consensus 217 g~pvIlVlNKiDlv~~~~~--~--------~~il~-~~~~~l~lg~~~VV~---------iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 217 GQRTIGVITKLDLMDEGTD--A--------RDVLE-NKLLPLRRGYIGVVN---------RSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp CSSEEEEEECTTSSCTTCC--S--------HHHHT-TCSSCCSSCEEECCC---------CCCEESSSSEEHHHHHHHH
T ss_pred CCCEEEEEeCcccCCcchh--h--------HHHHH-HHhhhhhccCCceEE---------ecccccccchhHHHHHHHH
Confidence 5899999999999865321 1 11211 111000 00023444 9999999998888877653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.25 E-value=6.5e-12 Score=118.14 Aligned_cols=110 Identities=12% Similarity=0.006 Sum_probs=63.9
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.||||+|....... ....+|++|+|+|++..+.+..+... . . +.|+++|+||+
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~~---~--~---------------~~p~ivv~NK~ 204 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKKG---L--M---------------EVADLIVINKD 204 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCHH---H--H---------------HHCSEEEECCC
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHHh---h--h---------------cccCEEEEECC
Confidence 356999999996544332 35899999999999765432211111 1 1 35889999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHH---HcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVE---KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~---~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
|+.... .+ .....++.. .++...-....++++ +||++|.|++++++.+.+.+.
T Consensus 205 Dl~~~~--~~-----~~~~~~l~~~l~~~~~~~~~~~~~vi~---------iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 205 DGDNHT--NV-----AIARHMYESALHILRRKYDEWQPRVLT---------CSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CTTCHH--HH-----HHHHHHHHHHHHHSCCSBTTBCCEEEE---------CBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCChH--HH-----HHHHHHHHHHHHhccccccCCCCcEEE---------eeCCCCCCHHHHHHHHHHHHH
Confidence 997531 11 011122322 222100000134556 999999999999999887653
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=123.99 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=80.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCC----CCC----------cccceeEEEEEEEeCCCCCCCCccCCCCCceEEEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK--GSSFS----RPS----------QTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVE 86 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~--~~~~~----~~~----------~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 86 (333)
+|+|+|...+|||||+.+|+. +.+.. ... ..-|+++....+.+. -+.+.++
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-------------~~~~~iN 70 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-------------WENTKVN 70 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-------------CSSCBCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE-------------ECCEEEE
Confidence 689999999999999999972 21110 000 001222222222221 3456799
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
|.|||||.+|.......++-+|++|+|+|+...-.-+....|.. +.+. ++|+|++.||+|....
T Consensus 71 lIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~---------------~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 71 IIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKM---------------GIPTIFFINKIDQNGI 134 (638)
T ss_dssp CEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHH---------------TCSCEECCEECCSSSC
T ss_pred EEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHc---------------CCCeEEEEeccccccC
Confidence 99999999999999899999999999999998765555445544 3343 5899999999998654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=114.39 Aligned_cols=110 Identities=19% Similarity=0.088 Sum_probs=83.1
Q ss_pred ceEEEEEEe-CCC-----chhhhhhHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 019959 81 RDFFVELWD-ISG-----HERYKDCRSILYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 153 (333)
Q Consensus 81 ~~~~l~i~D-t~G-----~e~~~~~~~~~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P 153 (333)
..+.+.+|| +.| ++++..+.+.++.++|++|+|||++++. ++..+..|+..+... ++|
T Consensus 48 D~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~---------------~~~ 112 (302)
T 2yv5_A 48 DYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF---------------KVE 112 (302)
T ss_dssp CEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT---------------TCE
T ss_pred eEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC---------------CCC
Confidence 345556665 333 7888888888999999999999999986 899999999987654 689
Q ss_pred EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 154 YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 154 iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
+++|+||+||.+.. .+. ..++..++++..| +++++ +||++|.|++++++.+.
T Consensus 113 ~ilV~NK~DL~~~~--~v~---~~~~~~~~~~~~g-------~~~~~---------~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 113 PVIVFNKIDLLNEE--EKK---ELERWISIYRDAG-------YDVLK---------VSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EEEEECCGGGCCHH--HHH---HHHHHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHTT
T ss_pred EEEEEEcccCCCcc--ccH---HHHHHHHHHHHCC-------CeEEE---------EECCCCCCHHHHHhhcc
Confidence 99999999997641 111 0144555566666 35777 99999999998887654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.4e-11 Score=112.98 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=52.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCc----cCCCCCceEEEEEEeCCCc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNS----IKGDSERDFFVELWDISGH 93 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~l~i~Dt~G~ 93 (333)
....++|+|||.+|||||||+|+|++..+.....++.+.+.....+.+++.. -.. ..........+.+|||+|.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r--~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDER--FDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHH--HHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCcc--ceeeccccCcccccccccEEEECCCc
Confidence 3455799999999999999999999886644444444444444455443100 000 0000001235999999997
Q ss_pred hhhhh-------hHHhhccCCcEEEEEEECCCcccH
Q 019959 94 ERYKD-------CRSILYSQINGVIFVHDLSQRRTK 122 (333)
Q Consensus 94 e~~~~-------~~~~~~~~ad~vIlV~D~s~~~S~ 122 (333)
.++.. ....+++.+|++++|+|+++..++
T Consensus 97 ~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ----------CCHHHHHHHTSSSEEEEEEC------
T ss_pred ccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 76543 344568899999999999876544
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=111.16 Aligned_cols=123 Identities=17% Similarity=0.152 Sum_probs=83.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--------CC------CCC--CCcccceeEEEEE--EEeCCCCCCCCccCCCCCc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--------SS------FSR--PSQTIGCTVGVKH--ITYGSSGSSSNSIKGDSER 81 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--------~~------~~~--~~~t~~~~~~~~~--~~~~~~~~~~~~i~~~~~~ 81 (333)
+.=+|+|||...+|||||+.+|+.. .. ... ....-|+++.... +.+.+.. ....
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~--------~~~~ 83 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSR--------GQYD 83 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTT--------SCSC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCc--------CCCC
Confidence 3347999999999999999999721 11 100 0111133333222 2222100 1134
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.++|+|||||-+|..-....++-+|++|+|+|+...-.-+....|...... ++|+|++.||+
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----------------~lp~i~~iNKi 147 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----------------GVPRIVYVNKM 147 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----------------TCCEEEEEECS
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----------------CCCeEEEEccc
Confidence 78999999999999999888899999999999999988776666666655443 58999999999
Q ss_pred CCCCc
Q 019959 162 DVAAK 166 (333)
Q Consensus 162 Dl~~~ 166 (333)
|....
T Consensus 148 Dr~~a 152 (709)
T 4fn5_A 148 DRQGA 152 (709)
T ss_dssp SSTTC
T ss_pred cccCc
Confidence 98643
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-10 Score=100.72 Aligned_cols=113 Identities=9% Similarity=0.001 Sum_probs=69.1
Q ss_pred CCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc-CCCCccC
Q 019959 90 ISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA-DVAAKEG 168 (333)
Q Consensus 90 t~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~-Dl~~~~~ 168 (333)
..||+.++.+|+.||.++|++|||+|.+|++.++ .+.-+.++....... ....++|++|.+||. |+...
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee-------~~L~gapLLVlANKqqDlp~A-- 178 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPA-------FGSSGRPLLVLSCISQGDVKR-- 178 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTT-------SSCSCSCEEEEEEESSTTSCB--
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcch-------hhhCCCeEEEEeCCCcCccCC--
Confidence 3479999999999999999999999999987654 333333333221100 001378999999995 67543
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+ +.++++.+++.......-+.. |||++|.|+.+++++|.+.+.
T Consensus 179 --ms-------~~EI~e~L~L~~l~R~W~Iq~---------csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 179 --MP-------CFYLAHELHLNLLNHPWLVQD---------TEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp --CC-------HHHHHHHTTGGGGCSCEEEEE---------EETTTCTTHHHHHHHHTTTTT
T ss_pred --CC-------HHHHHHHcCCcCCCCCEEEEE---------eECCCCcCHHHHHHHHHHHHH
Confidence 22 345566666532211112333 999999999999999986653
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-09 Score=101.70 Aligned_cols=99 Identities=13% Similarity=0.160 Sum_probs=60.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCCCC--CCCccCCCCCc--eEEEEEEeCCC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSSGS--SSNSIKGDSER--DFFVELWDISG 92 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~--~~~~i~~~~~~--~~~l~i~Dt~G 92 (333)
.....+|+|||.+|||||||+|+|++... .....++.+.+.....+.+.+..- -.... .... ...+.+||++|
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~--~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAY--KPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHH--CCSEEECEEEEEECTGG
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhc--ccccccCcceEEEeccc
Confidence 34457999999999999999999998765 444444333444344444431000 00000 0001 13589999999
Q ss_pred chh-------hhhhHHhhccCCcEEEEEEECCC
Q 019959 93 HER-------YKDCRSILYSQINGVIFVHDLSQ 118 (333)
Q Consensus 93 ~e~-------~~~~~~~~~~~ad~vIlV~D~s~ 118 (333)
... +.......++.+|++++|+|+.+
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 322 33334445789999999999874
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=101.42 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=61.7
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.|+||+|...-.. .....+|++++|+|.+..+..+.+..++. ..+.++|.||+
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~--------------------~~~~ivvlNK~ 203 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIF--------------------ELADMIAVNKA 203 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHH--------------------HHCSEEEEECC
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHh--------------------ccccEEEEEch
Confidence 45689999999643221 23468999999999875433221211111 23567777999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCCCCC---cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS---EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~---~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
|+.... ..+ ....+.+.....+.... ...+++. +||+++.|++++++.+.+.+
T Consensus 204 Dl~~~~--~~s----~~~~~~l~~a~~l~~~~~~~~~~~vl~---------~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 204 DDGDGE--RRA----SAAASEYRAALHILTPPSATWTPPVVT---------ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp STTCCH--HHH----HHHHHHHHHHHTTBCCSBTTBCCCEEE---------EBTTTTBSHHHHHHHHHHHH
T ss_pred hccCch--hHH----HHHHHHHHHHHHhccccccCCCCCEEE---------EeCCCCCCHHHHHHHHHHHH
Confidence 975421 111 12233343333322100 0123444 99999999999998887754
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=4e-09 Score=95.81 Aligned_cols=109 Identities=7% Similarity=-0.013 Sum_probs=72.3
Q ss_pred CCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHH---HH-hcCCCCCCCCCCCCCCCCCcEEEEeeC-cCCC
Q 019959 90 ISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE---IA-TSGTFSAPLASGGPGGLPVPYVVIGNK-ADVA 164 (333)
Q Consensus 90 t~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~---i~-~~~~~~~~~~~~~~~~~~~PiivVgNK-~Dl~ 164 (333)
.+||+..+.+++.||.++|++|+|+|.+|++.++ ...-+.+ +. +... ..++|++|.+|| .|+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~-----------l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFG-----------SSGRPLLVLSCISQGDV 261 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHH-----------CTTCCEEEEEEESSTTS
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhh-----------cCCCeEEEEeCCccccc
Confidence 4679999999999999999999999999987644 2222221 11 1100 026899999997 5886
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.. .+ +.++++.+++.......-+.. |||++|.|+.++++++.+.+.
T Consensus 262 ~A----ms-------~~EI~e~L~L~~l~r~W~Iq~---------csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 262 KR----MP-------CFYLAHELHLNLLNHPWLVQD---------TEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp CB----CC-------HHHHHHHTTGGGGCSCEEEEE---------EETTTCTTHHHHHHHHHHHSC
T ss_pred CC----CC-------HHHHHHHcCCccCCCcEEEEe---------cccCCCcCHHHHHHHHHHHHH
Confidence 43 22 345566666532211111333 999999999999999987763
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-08 Score=95.94 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=73.5
Q ss_pred CchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 92 GHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 92 G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
..++|..+...+++.+|++|+|+|++++. ..|..++.+... +.|+++|+||+||.+.. +
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-------------~~p~ilV~NK~DL~~~~---~ 113 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-------------NNKVLLVGNKADLIPKS---V 113 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-------------SSCEEEEEECGGGSCTT---S
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-------------CCcEEEEEEChhcCCcc---c
Confidence 46889999999999999999999999853 467777777642 68999999999997542 2
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
....+.+..+.+++..|+.. .++++ +||++|.|++++++.+.+
T Consensus 114 ~~~~~~~~l~~~~~~~g~~~----~~v~~---------iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 114 KHDKVKHWMRYSAKQLGLKP----EDVFL---------ISAAKGQGIAELADAIEY 156 (368)
T ss_dssp CHHHHHHHHHHHHHHTTCCC----SEEEE---------CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCc----ccEEE---------EeCCCCcCHHHHHhhhhh
Confidence 22111233333456666421 24566 999999999999988854
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.7e-08 Score=92.11 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=70.8
Q ss_pred CCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCc
Q 019959 91 SGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 170 (333)
Q Consensus 91 ~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~ 170 (333)
..+++|..+...++..++++|+|+|+++..+ .|..++.+... +.|+++|+||+||.+..
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-------------~~piilV~NK~DLl~~~--- 114 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-------------DNPILLVGNKADLLPRS--- 114 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-------------TSCEEEEEECGGGSCTT---
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-------------CCCEEEEEEChhcCCCc---
Confidence 3588999999998899999999999999874 46656655532 68999999999998642
Q ss_pred cCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+....+.+..+.++++.|+.. .++++ +||++|.|++++++.+.+
T Consensus 115 ~~~~~~~~~l~~~~~~~g~~~----~~v~~---------iSA~~g~gi~~L~~~I~~ 158 (369)
T 3ec1_A 115 VKYPKLLRWMRRMAEELGLCP----VDVCL---------VSAAKGIGMAKVMEAINR 158 (369)
T ss_dssp CCHHHHHHHHHHHHHTTTCCC----SEEEE---------CBTTTTBTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCc----ccEEE---------EECCCCCCHHHHHHHHHh
Confidence 221111122333345556421 13455 999999999999988864
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-07 Score=93.22 Aligned_cols=115 Identities=19% Similarity=0.075 Sum_probs=61.8
Q ss_pred eEEEEEEeCCCchhhh-hh---HHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE-
Q 019959 82 DFFVELWDISGHERYK-DC---RSIL--YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY- 154 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~-~~---~~~~--~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi- 154 (333)
.+.+.|+||+|..... .+ ...+ +..+|.+++|+|++....... ....+... +|+
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~~----------------~~i~ 243 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKDK----------------VDVA 243 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHHH----------------HCCC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHhh----------------cCce
Confidence 4568999999954211 11 1111 237899999999987643221 22222221 464
Q ss_pred EEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCC----CCcCCCccccCCCCCceeeeeccCcC-HHHHHHHHHH
Q 019959 155 VVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLP----SSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFR 227 (333)
Q Consensus 155 ivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~----~~~~~p~~E~~~~~~~~~~SAk~g~~-v~~~~~~l~~ 227 (333)
++|.||+|..... ..+..+...++... ..+.+.-++ +-.+.+.+|+..|.| ++++++.+.+
T Consensus 244 gvVlNK~D~~~~~----------g~~l~~~~~~g~PI~fig~ge~~~dl~--~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 244 SVIVTKLDGHAKG----------GGALSAVAATKSPIIFIGTGEHIDDFE--PFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp CEEEECTTSCCCC----------THHHHHHHHHCCCEEEEECSSSTTCEE--CCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred EEEEeCCccccch----------HHHHHHHHHhCCCeEEeccccchhhhh--ccCcceeeehhcCCCcHHHHHHHHHH
Confidence 7889999987542 22333444554310 000011111 111233489999988 7777766643
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.50 E-value=9.3e-09 Score=97.56 Aligned_cols=127 Identities=19% Similarity=0.182 Sum_probs=73.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC------CCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG------SSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
.+|+++|.+|||||||+|+|++. .......+ |.+.....+.++ .. +.++||||...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~-------------~~---~~liDtPG~~~ 224 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLE-------------SG---ATLYDTPGIIN 224 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECS-------------TT---CEEEECCSCCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeC-------------CC---eEEEeCCCcCc
Confidence 47999999999999999999975 22111122 223333344443 11 78999999422
Q ss_pred hhh--------hHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 96 YKD--------CRSILY--SQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 96 ~~~--------~~~~~~--~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
... ....++ ...+.++++++..+...+..+.. +..+. ..+.|++++.||+|..+
T Consensus 225 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~---------------~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 225 HHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK---------------GGRRSFVCYMANELTVH 288 (369)
T ss_dssp CSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE---------------SSSEEEEEEECTTSCEE
T ss_pred HHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-EEEcc---------------CCCceEEEEecCCcccc
Confidence 111 111112 67899999999843311111110 11111 12689999999999876
Q ss_pred ccCCccCcccHHHHHHHHHHHcCC
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
... . ......+.+.+|.
T Consensus 289 ~~~--~-----~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 289 RTK--L-----EKADSLYANQLGE 305 (369)
T ss_dssp EEE--G-----GGHHHHHHHHBTT
T ss_pred ccc--H-----HHHHHHHHHhcCC
Confidence 532 1 1445556666774
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-06 Score=83.81 Aligned_cols=25 Identities=28% Similarity=0.658 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSS 46 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~ 46 (333)
++|+|||++|+|||||++.|++..+
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccc
Confidence 5799999999999999999998754
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.6e-08 Score=91.23 Aligned_cols=129 Identities=20% Similarity=0.224 Sum_probs=71.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-----CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-----SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
.+|+++|.+|||||||+|+|++.... .......+.+.....+.+. +. +.++||||....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-------------~~---~~liDtPG~~~~ 224 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-------------EE---SSLYDTPGIINH 224 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-------------SS---CEEEECCCBCCT
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-------------CC---eEEEeCCCcCcH
Confidence 47999999999999999999975211 1111122333333344432 11 789999994221
Q ss_pred hh--------hHHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 97 KD--------CRSIL--YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 97 ~~--------~~~~~--~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.. ....+ ....+.+++++|......+..+.. +..+. +.+.|+++|.||+|..+.
T Consensus 225 ~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~---------------~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 225 HQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS---------------GGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp TSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE---------------SSSEEEEEEECTTSCEEE
T ss_pred HHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-EEEec---------------CCCceEEEEecCcccccc
Confidence 11 11111 357888899988743211111100 11111 126899999999998865
Q ss_pred cCCccCcccHHHHHHHHHHHcCC
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
.. +......+.+.+|.
T Consensus 289 ~~-------~~~~~~~~~~~~g~ 304 (368)
T 3h2y_A 289 TK-------LEKADELYKNHAGD 304 (368)
T ss_dssp EE-------HHHHHHHHHHHBTT
T ss_pred cc-------HHHHHHHHHHHhCC
Confidence 21 12445556666774
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.34 E-value=7.4e-07 Score=81.30 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=65.7
Q ss_pred EEeCCCch-hhhhhHHhhccCCcEEEEEEECCCcccHH--HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 87 LWDISGHE-RYKDCRSILYSQINGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 87 i~Dt~G~e-~~~~~~~~~~~~ad~vIlV~D~s~~~S~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
|-..||+. .........+..+|+||+|+|+.++.+.. .+..|+ . +.|+++|+||+||
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~-------------~kp~ilVlNK~DL 62 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------K-------------NKPRIMLLNKADK 62 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------S-------------SSCEEEEEECGGG
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------C-------------CCCEEEEEECccc
Confidence 44567764 34444555688999999999999988764 344443 1 5799999999999
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+. +..+.|.+.+.-. ++++++ +||+++.|++++++.+.+.+.
T Consensus 63 ~~~-----------~~~~~~~~~~~~~----g~~~i~---------iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 63 ADA-----------AVTQQWKEHFENQ----GIRSLS---------INSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp SCH-----------HHHHHHHHHHHTT----TCCEEE---------CCTTTCTTGGGHHHHHHHHHH
T ss_pred CCH-----------HHHHHHHHHHHhc----CCcEEE---------EECCCcccHHHHHHHHHHHHH
Confidence 864 3344454433110 135666 999999999998887766554
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-06 Score=77.25 Aligned_cols=24 Identities=46% Similarity=0.851 Sum_probs=22.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+|++|+|||||++.+++.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999999999999864
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.8e-05 Score=75.89 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=82.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCccc-ceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh----h
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTI-GCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----Y 96 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----~ 96 (333)
..|+|+|++|||||||+|.+++-.......-+. +.+.....+.+. . ...-.+.+||++|... .
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-----------~-~~~~~ltv~D~~g~~~~~~~~ 137 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-----------H-PNIPNVVFWDLPGIGSTNFPP 137 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-----------C-SSCTTEEEEECCCGGGSSCCH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-----------c-cccCCeeehHhhcccchHHHH
Confidence 379999999999999999999742211111110 111100001111 0 0111378999998421 1
Q ss_pred hhhHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC--c---cCCc
Q 019959 97 KDCRS-ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA--K---EGTR 170 (333)
Q Consensus 97 ~~~~~-~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~--~---~~r~ 170 (333)
..... .-+...+.+++ +|..... -+.+ .+...+... +.|+++|.||.|+.- + ....
T Consensus 138 ~~~L~~~~L~~~~~~~~-lS~G~~~-kqrv-~la~aL~~~---------------~~p~~lV~tkpdlllLDEPtsgLD~ 199 (413)
T 1tq4_A 138 DTYLEKMKFYEYDFFII-ISATRFK-KNDI-DIAKAISMM---------------KKEFYFVRTKVDSDITNEADGEPQT 199 (413)
T ss_dssp HHHHHHTTGGGCSEEEE-EESSCCC-HHHH-HHHHHHHHT---------------TCEEEEEECCHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCCccCCeEE-eCCCCcc-HHHH-HHHHHHHhc---------------CCCeEEEEecCcccccCcccccCCH
Confidence 11111 12334566555 7775311 2222 122333333 579999999999741 1 0011
Q ss_pred cCcccHHHHHHHHHH----HcCCCCCCcCCCccccCCCCCceeeee--ccCcCHHHHHHHHHHHH
Q 019959 171 GSSGNLVDAARQWVE----KQGLLPSSEELPLTESFPGGGGLIAAA--KEARYDKEAVMKFFRML 229 (333)
Q Consensus 171 v~~~~~~~~~~~~~~----~~~~~~~~~~~p~~E~~~~~~~~~~SA--k~g~~v~~~~~~l~~~l 229 (333)
....++.+..++++. +.|.. ....+- +|+ ..+.|++++.+.+.+.+
T Consensus 200 ~~~~~l~~~l~~l~~~~l~~~g~~----~~~iil---------iSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 200 FDKEKVLQDIRLNCVNTFRENGIA----EPPIFL---------LSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCS----SCCEEE---------CCTTCTTSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----CCcEEE---------EecCcCCccCHHHHHHHHHHhC
Confidence 222233344555542 22311 011222 788 67777888888777654
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-06 Score=78.48 Aligned_cols=56 Identities=27% Similarity=0.367 Sum_probs=35.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
++|+|+|.+|||||||+|+|++..... ...+.|.+.....+.++ ..+.||||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~----------------~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE----------------NGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT----------------TSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC----------------CCEEEEECCCcc
Confidence 699999999999999999999776532 23333444333333332 138899999954
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-06 Score=77.40 Aligned_cols=27 Identities=33% Similarity=0.635 Sum_probs=24.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
...++|+|+|.+|||||||+|+|++..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCc
Confidence 456899999999999999999999765
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=97.85 E-value=1.2e-05 Score=77.51 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+++.|..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.1e-05 Score=75.83 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=24.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSS 46 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~ 46 (333)
...++|+|+|.+|||||||+|+|++...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 4567899999999999999999998753
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.76 E-value=4e-06 Score=81.80 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=62.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--h
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER--Y 96 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~--~ 96 (333)
...++|+++|.+|+||||+.++|...-.. ....+.++.......... +......+||..|.+. +
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~-------------g~~~~~~ifd~~g~~~~r~ 102 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMV-------------KTYKSFEFFLPDNEEGLKI 102 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHH-------------CSCCCGGGGCTTCHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhc-------------cCCCcccccCCCCHHHHHH
Confidence 44579999999999999999999754210 011111111000000000 1112356899999733 2
Q ss_pred hhhH--------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhc
Q 019959 97 KDCR--------SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATS 135 (333)
Q Consensus 97 ~~~~--------~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~ 135 (333)
...+ ..++..+++.++|+|.++. +++....|+..+...
T Consensus 103 re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 103 RKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 3322 4456677898999999998 677778888877765
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=70.85 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...|+++|.+||||||++..|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 4689999999999999999987
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00025 Score=71.32 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.|+|||+.|+|||||++.+++-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999764
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=6.2e-05 Score=67.71 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=54.0
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
.....+..+|+||+|+|+.++.+..+ +. |+ +.|+++|+||+||.+.
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------------------~k~~iivlNK~DL~~~---------- 61 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------------------RKETIILLNKVDIADE---------- 61 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------------------TSEEEEEEECGGGSCH----------
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------------------CCCcEEEEECccCCCH----------
Confidence 33455889999999999998876543 22 21 3689999999999864
Q ss_pred HHHHHHHH---HHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHH
Q 019959 177 VDAARQWV---EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 226 (333)
Q Consensus 177 ~~~~~~~~---~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~ 226 (333)
+..+.|. ++.| +++ . +||+++.|++++++.+.
T Consensus 62 -~~~~~~~~~~~~~g-------~~v-~---------iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 62 -KTTKKWVEFFKKQG-------KRV-I---------TTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp -HHHHHHHHHHHHTT-------CCE-E---------ECCTTSCHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHcC-------CeE-E---------EECCCCcCHHHHHHHHH
Confidence 2233333 3334 234 4 99999998888776654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00011 Score=70.68 Aligned_cols=79 Identities=22% Similarity=0.139 Sum_probs=46.3
Q ss_pred eEEEEEEeCCCchh----h---hhhHHh-hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 019959 82 DFFVELWDISGHER----Y---KDCRSI-LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 153 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~----~---~~~~~~-~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P 153 (333)
.+.+.|.||+|... . ..+... .....+.+++|.|++....-. .....+.+.. .+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~---------------~~ 240 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS---------------PI 240 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC---------------SS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc---------------CC
Confidence 45688999999432 1 111110 122579999999998653322 2333443331 35
Q ss_pred EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcC
Q 019959 154 YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQG 188 (333)
Q Consensus 154 iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~ 188 (333)
..||.||.|.... ...+..++...+
T Consensus 241 ~gVIlTKlD~~a~----------~G~als~~~~~g 265 (433)
T 3kl4_A 241 GSVIITKMDGTAK----------GGGALSAVVATG 265 (433)
T ss_dssp EEEEEECGGGCSC----------HHHHHHHHHHHT
T ss_pred cEEEEeccccccc----------chHHHHHHHHHC
Confidence 7789999998754 244555666666
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00014 Score=66.98 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=39.8
Q ss_pred hhHHhhccCCcEEEEEEECCCccc-HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRT-KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.+.+..+.++|.+++|+|+.++.. ...+..++...... ++|.+||.||+||.+.
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~---------------~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---------------DIQPIICITKMDLIED 132 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---------------TCEEEEEEECGGGCCC
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEECCccCch
Confidence 334446789999999999997654 44456665544333 6889999999999875
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0012 Score=61.99 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=54.9
Q ss_pred hccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
...++|.+++|.+.. +. +...+..++...... ++|.+||.||+||.+... .+..+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---------------~~~~iivlNK~DL~~~~~--------~~~~~ 182 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---------------QVEPLIVLNKIDLLDDEG--------MDFVN 182 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---------------TCEEEEEEECGGGCCHHH--------HHHHH
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---------------CCCEEEEEECccCCCchh--------HHHHH
Confidence 367899999987764 54 455566666555444 578899999999986520 02244
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMK 224 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~ 224 (333)
+|...+.-. .++.+. +||+++.|++++...
T Consensus 183 ~~~~~y~~~----G~~v~~---------~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 183 EQMDIYRNI----GYRVLM---------VSSHTQDGLKPLEEA 212 (358)
T ss_dssp HHHHHHHTT----TCCEEE---------CBTTTTBTHHHHHHH
T ss_pred HHHHHHHhC----CCcEEE---------EecCCCcCHHHHHHh
Confidence 555543211 134555 999999998876654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00093 Score=61.09 Aligned_cols=78 Identities=19% Similarity=0.089 Sum_probs=46.0
Q ss_pred eEEEEEEeCCCchh--hh-hhHH-----hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 019959 82 DFFVELWDISGHER--YK-DCRS-----ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 153 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~--~~-~~~~-----~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P 153 (333)
.+.+.|+||+|... .. .+.. .....+|.+++|.|++... +.......+.. .++
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----------------~~~ 240 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----------------ASK 240 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----------------TCT
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----------------hCC
Confidence 45689999999655 21 1111 1244799999999987532 22122233322 245
Q ss_pred -EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcC
Q 019959 154 -YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQG 188 (333)
Q Consensus 154 -iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~ 188 (333)
..+|.||+|.... ...+..++...+
T Consensus 241 i~gvVlnk~D~~~~----------~g~~~~~~~~~~ 266 (297)
T 1j8m_F 241 IGTIIITKMDGTAK----------GGGALSAVAATG 266 (297)
T ss_dssp TEEEEEECGGGCTT----------HHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCcc----------hHHHHHHHHHHC
Confidence 6788999997643 133455666666
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.002 Score=54.58 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=56.7
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.|+|+++.- .......+..+|.+|++...+... ..+...+..+...... ..+.++.+|.|++
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~----------~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAY----------SRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCG----------GGCCEEEEEECSB
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHh----------CCCCcEEEEEecc
Confidence 3568899999864 233334566799999999887654 6677777777665321 1356789999999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCC
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
|.... . ..++.++.+.++.
T Consensus 141 ~~~~~----~-----~~~~~~~l~~~~~ 159 (206)
T 4dzz_A 141 IEMAT----M-----LNVLKESIKDTGV 159 (206)
T ss_dssp CTTEE----E-----EHHHHHHHHHHTC
T ss_pred CCCch----H-----HHHHHHHHHHcCC
Confidence 95432 1 1456666666764
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0053 Score=59.24 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHc
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.+..-|+|+|.+++|||+|+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3456799999999999999999985
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=54.70 Aligned_cols=22 Identities=45% Similarity=0.892 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+++|+|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999854
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=54.25 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999863
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0021 Score=54.83 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++|+|++|||||||++.+++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0033 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.683 Sum_probs=21.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..--|+|+|++|||||||+++|+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3346899999999999999999854
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0036 Score=53.61 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0036 Score=52.97 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0038 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+++.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999864
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0039 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.675 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|||||||++.+++.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0024 Score=58.60 Aligned_cols=22 Identities=45% Similarity=0.682 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|||||||+|.+.+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 7999999999999999999865
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0043 Score=52.65 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999854
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.05 Score=48.08 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=46.3
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.+.|+|+++.-. ......+..+|.+|+|...+ ..+...+...+..+.... .+.++.+|.|+.
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~-------------~~~~~~vv~N~~ 207 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN-------------LFLPIFLIITRF 207 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT-------------CCCCEEEEEEEE
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh-------------ccCCEEEEEecc
Confidence 46688999988542 23334566799999999885 456677777777776653 256788999999
Q ss_pred C
Q 019959 162 D 162 (333)
Q Consensus 162 D 162 (333)
+
T Consensus 208 ~ 208 (267)
T 3k9g_A 208 K 208 (267)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0041 Score=51.64 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-++|+|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999865
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0048 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||||++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999865
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0051 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|||||||++.|...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999865
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.017 Score=55.42 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=19.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...|+|+|.+||||||++..|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578889999999999999987
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0057 Score=50.42 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.++|+|+.|+|||||++.+++.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999998653
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0068 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
...|+|+|++|+|||||++.+.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.006 Score=53.63 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999854
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0075 Score=56.50 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.++|+|++|||||||+|.|++..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999754
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0087 Score=50.97 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|||||||+++|...
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0087 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0085 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.|+|+|++|||||||++.|.+.-
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 69999999999999999998653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0072 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0091 Score=49.99 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|+|++|+|||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0096 Score=48.90 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|.+|+|||||.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999753
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0087 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0085 Score=50.87 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|+|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999853
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0091 Score=51.78 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999865
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0098 Score=52.32 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999854
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0091 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.01 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.01 Score=52.58 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.22 Score=42.39 Aligned_cols=67 Identities=7% Similarity=-0.044 Sum_probs=46.6
Q ss_pred eEEEEEEeCCCc-hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeC
Q 019959 82 DFFVELWDISGH-ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 160 (333)
Q Consensus 82 ~~~l~i~Dt~G~-e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK 160 (333)
.+.+.|.|+++. ... .....+..+|.+|++...+ ..+...+...+..+.... +.++.+|.|+
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--------------~~~~~vv~N~ 129 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--------------NNRFRILLTI 129 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--------------SSSEEEEECS
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--------------CCCEEEEEEe
Confidence 456889999886 332 2234567899999999875 345666666777776642 3568899999
Q ss_pred cCCCC
Q 019959 161 ADVAA 165 (333)
Q Consensus 161 ~Dl~~ 165 (333)
.|...
T Consensus 130 ~~~~~ 134 (209)
T 3cwq_A 130 IPPYP 134 (209)
T ss_dssp BCCTT
T ss_pred cCCcc
Confidence 98654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.012 Score=47.96 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=18.6
Q ss_pred eEEEEECCCCCCHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLI 41 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l 41 (333)
.-|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.01 Score=53.07 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|++|+|||||++.+++
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 699999999999999999985
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0095 Score=53.05 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.011 Score=48.25 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0097 Score=53.35 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999865
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.012 Score=51.67 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~ 42 (333)
-.|+|+|++|||||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999998
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=50.23 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+|+|||||++.|.+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999975
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.011 Score=51.66 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.012 Score=49.73 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|.+|+|||||.+.|...
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999743
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.012 Score=52.82 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.011 Score=50.43 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..|+|+|+.|+|||||++.+.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.011 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5899999999999999999865
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.011 Score=52.19 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.012 Score=53.95 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=52.46 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999865
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.01 Score=54.12 Aligned_cols=23 Identities=48% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.++|+|++|||||||+|.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 68999999999999999998653
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.01 Score=49.32 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||+|++.+.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.036 Score=46.59 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
++|.|++|+|||+|++.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999874
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.012 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|.+|+|||||+++++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 6899999999999999999854
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.012 Score=53.71 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.++|+|++|||||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.012 Score=52.50 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999864
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.014 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.01 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.013 Score=52.96 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999865
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.013 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.02 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.|+|+|.+|+|||||++.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999874
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.015 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999963
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.009 Score=51.88 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHH-cC
Q 019959 23 RVLVVGDSGVGKTSLVNLIV-KG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~-~~ 44 (333)
-|+|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.02 Score=48.41 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=22.7
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHc
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.+...+.|+|+|.+|+||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344556899999999999999999874
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=52.09 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.012 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||++.+++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.016 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.017 Score=48.57 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999974
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999865
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.0073 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||||++.+++-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.018 Score=48.77 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+||||||+.+.|..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999974
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.015 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999986
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.014 Score=54.66 Aligned_cols=24 Identities=29% Similarity=0.417 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.-+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.017 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.016 Score=51.82 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.018 Score=47.48 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|+|.+||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.0087 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|.+|+|||||.+.+.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998743
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.016 Score=53.19 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...-|+|+|++|+|||||++.+.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 345799999999999999999875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.011 Score=54.10 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+++-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6999999999999999998754
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.02 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.023 Score=47.13 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.025 Score=47.95 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+.|+|+|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.021 Score=46.86 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.018 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.015 Score=47.27 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.019 Score=52.17 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.022 Score=53.31 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999865
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.028 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.18 Score=48.49 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHH
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...=|+|+|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45567799999999999999554
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=94.30 E-value=0.023 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 5899999999999999999865
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.023 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5899999999999999999865
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.023 Score=53.22 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5899999999999999999865
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.027 Score=46.67 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+||||||+.+.|..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999964
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.023 Score=49.88 Aligned_cols=21 Identities=48% Similarity=0.722 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.022 Score=52.02 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|++|||||||++.+.+
T Consensus 104 vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999999973
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.022 Score=53.31 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|++|+|||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999974
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.033 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
...|+|+|.+|+|||||++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.024 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 5899999999999999999865
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.024 Score=48.48 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.035 Score=46.31 Aligned_cols=24 Identities=33% Similarity=0.697 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
...|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999754
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.024 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 5899999999999999999865
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.036 Score=50.26 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
....|+|+|.+|+|||||++.|..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.025 Score=53.16 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5899999999999999999865
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.035 Score=46.19 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.022 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.711 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||||++.+++-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999864
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.03 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+.|+|+|+|||||+|+..+|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999743
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.026 Score=50.67 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.034 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|+.|+|||||++.|.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.035 Score=46.87 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.028 Score=51.33 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
--|+|+|+.|||||||+..+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.033 Score=45.30 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999974
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.028 Score=46.53 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.+|+|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.017 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.-|+|+|.+|+||||+.+.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.039 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
....|+|+|.+|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.032 Score=47.71 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999984
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.037 Score=46.45 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
....|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999999864
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.03 Score=52.63 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|++|+|||||++.+++
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999985
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.034 Score=46.29 Aligned_cols=21 Identities=38% Similarity=0.343 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+|+|||||+.+++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999984
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.022 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5899999999999999999865
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.036 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999874
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.041 Score=45.65 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.03 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
--|+|+|++|||||||++.+.+
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.034 Score=45.95 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 3689999999999999999973
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.043 Score=49.54 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...-|+|+|.+|||||||..+|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999974
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.048 Score=45.93 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=20.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
....|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 335799999999999999999974
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=93.78 E-value=0.032 Score=45.96 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
+|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999874
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.024 Score=52.36 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+++-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999865
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.033 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.595 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.043 Score=48.16 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++|+|+|.+||||||+..+|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.039 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..|+|+|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.033 Score=49.71 Aligned_cols=21 Identities=48% Similarity=0.722 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999864
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.03 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999999864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.041 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHc
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...+.|+|.|.+|+||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3447899999999999999999875
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.039 Score=47.62 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.014 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|+|.+|+|||||++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999874
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.04 Score=48.65 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~ 42 (333)
..|+|+|++|+|||||++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.043 Score=50.02 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...|+|+|++|+|||||++.|.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.049 Score=50.16 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHc
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...+-|+|+|++|||||||++.|..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.028 Score=46.07 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|++.+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988743
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.026 Score=49.02 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-.-|+|+|..|+|||||++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 347999999999999999998764
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=93.58 E-value=0.037 Score=48.93 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|+|++|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999974
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.057 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.+..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.035 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999853
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.049 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.037 Score=51.01 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999864
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.021 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999865
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.046 Score=45.38 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.043 Score=47.08 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+.|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999864
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.042 Score=47.07 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++|.|++|+|||+|++.+..
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.048 Score=45.43 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.04 Score=51.26 Aligned_cols=22 Identities=41% Similarity=0.797 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+++|+|+.|+|||||++.+++.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999976
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.047 Score=46.34 Aligned_cols=21 Identities=29% Similarity=0.150 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|+|++|+|||||+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.053 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHH
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
.+.+||+|+|.+|+|||||+.++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 456899999999999999999874
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.046 Score=46.01 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-.|+|.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.043 Score=51.33 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
--|+|+|+.|||||||+..+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3689999999999999999974
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.048 Score=47.03 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||+..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.053 Score=43.91 Aligned_cols=20 Identities=40% Similarity=0.762 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999986
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.039 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|+|||||+..+++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4889999999999999998854
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=93.23 E-value=0.042 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999873
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.048 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.048 Score=47.90 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||+|++.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999753
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.04 Score=54.08 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++|+|||||++.+++-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4999999999999999999864
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.052 Score=44.27 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.052 Score=44.84 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.053 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999874
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=93.06 E-value=0.047 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
--|+|+|.+|||||||++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4689999999999999999874
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.054 Score=45.85 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.041 Score=53.22 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6999999999999999999853
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.066 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.052 Score=46.09 Aligned_cols=21 Identities=48% Similarity=0.724 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=92.94 E-value=0.067 Score=45.68 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.075 Score=43.94 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.043 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=15.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=92.83 E-value=0.039 Score=50.58 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|..|+|||||++.+++.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999965
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.058 Score=47.52 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
....|+|+|.+|+||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999753
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.066 Score=44.30 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+|+||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.055 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+++|+|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.065 Score=52.86 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.064 Score=50.18 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 019959 24 VLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~ 42 (333)
++|+|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6699999999999999987
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=92.54 E-value=0.066 Score=46.61 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.-.-|+|.|.+||||||++++|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999753
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.061 Score=52.31 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999974
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.064 Score=53.35 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+++-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.081 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHHc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.+.|+|.|++|+|||||.+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999873
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.075 Score=46.04 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|+|||||+|+..+|...
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999743
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=92.44 E-value=0.057 Score=53.74 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+++|+|++|+|||||++.+++-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6999999999999999999864
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.07 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|.+|+||||+.+.|..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.074 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|++.+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5999999999999999999754
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.15 E-value=0.079 Score=46.29 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|.|++|+|||+|++.+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.087 Score=42.09 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|.+.+...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5999999999999999999754
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.092 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHH
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999997
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.077 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||+|++.+.+.
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 7999999999999999999864
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.92 E-value=0.11 Score=47.72 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
++|.|++|+|||||++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999876
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.076 Score=52.40 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999999864
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.12 Score=46.47 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...|+|.|++|+|||+|++.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999998665
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=91.81 E-value=0.084 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999999985
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.097 Score=44.82 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..|+|+|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999855
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.088 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=0.085 Score=48.00 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|.|++|+|||+|++.+.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999975
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.065 Score=53.52 Aligned_cols=22 Identities=45% Similarity=0.800 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+++-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7999999999999999999854
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.086 Score=45.46 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|+|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999888863
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.079 Score=48.79 Aligned_cols=21 Identities=29% Similarity=0.706 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|.|++|+|||+|++.+.+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=91.71 E-value=0.084 Score=47.08 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|+|++|+|||||+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999884
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=91.71 E-value=0.096 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..|+|+|.+|+||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.12 Score=42.14 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.097 Score=47.32 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||+|++.+.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 6999999999999999999854
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.088 Score=47.78 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.|+|+|.+||||||++..|.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999986
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.15 Score=44.41 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHHH
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
..+++|++.|.+|||||+++-.+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 456899999999999999976664
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.40 E-value=0.11 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999975
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=91.40 E-value=0.06 Score=53.57 Aligned_cols=22 Identities=50% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999988754
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.12 Score=44.06 Aligned_cols=20 Identities=40% Similarity=0.762 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999885
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.1 Score=47.31 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|.|+.|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 6899999999999999999854
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.33 E-value=0.1 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|.|++|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.1 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999999864
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.072 Score=53.09 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988754
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=91.25 E-value=0.096 Score=47.27 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.-|+|.|++|+|||+|++.+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36778899999999999999854
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.11 Score=46.46 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|++.+...
T Consensus 52 ~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.13 Score=43.46 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++.|+|.|..|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.1 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.13 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=91.05 E-value=0.12 Score=47.34 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5889999999999999999854
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=0.12 Score=45.78 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-.|+|.|++|+|||+|+..+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999999864
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=90.94 E-value=0.15 Score=44.24 Aligned_cols=23 Identities=22% Similarity=0.562 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...|+|+|.+|+||||+.+.|..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.91 E-value=0.11 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999854
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=90.89 E-value=0.13 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999975
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=90.86 E-value=0.13 Score=47.04 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|+|.+|+||||++..+..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHH
Confidence 588999999999999998873
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=90.78 E-value=0.1 Score=44.98 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.++|.|++|+|||+++.++.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888874
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=90.72 E-value=0.14 Score=47.17 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|+|++|||||||...|..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999974
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=0.2 Score=44.93 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
--++|+|++|+|||+|++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999998753
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=90.60 E-value=0.14 Score=47.43 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3689999999999999999874
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=90.53 E-value=0.15 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++|||||+|...+...
T Consensus 12 ~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999999743
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=90.52 E-value=0.026 Score=49.34 Aligned_cols=21 Identities=24% Similarity=0.484 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|+|++|+|||||++.+++-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999999854
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=0.16 Score=42.50 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=90.44 E-value=0.11 Score=45.97 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+...|+|.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999988743
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.42 E-value=0.14 Score=51.18 Aligned_cols=21 Identities=33% Similarity=0.819 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|+|+.|+|||||++.+.+-
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 799999999999999999865
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.14 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.-|+|+|.+|+|||||.++|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999975
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.35 E-value=0.14 Score=46.96 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|.|++|+|||||++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999854
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=90.34 E-value=0.13 Score=47.70 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-+.|+|++|+|||||++.++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999865
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=90.32 E-value=0.12 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.19 E-value=0.15 Score=46.68 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||+|++.+...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 7999999999999999999864
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.16 E-value=0.15 Score=46.50 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|.|++|+|||+|++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=89.97 E-value=0.081 Score=46.61 Aligned_cols=20 Identities=45% Similarity=0.692 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
|+|.|++|+|||+|++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999999985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=89.95 E-value=0.18 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS 46 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~ 46 (333)
.++|+|+.|+|||||++.+.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999997654
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.16 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.++|.|++|+|||+|+..+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=89.82 E-value=0.087 Score=42.01 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|.+.+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 5999999999999999888643
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=89.69 E-value=0.19 Score=46.34 Aligned_cols=19 Identities=42% Similarity=0.844 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 019959 24 VLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~ 42 (333)
.+|+|+.|+|||||+.+++
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999875
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=89.68 E-value=0.17 Score=46.03 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|++|+|||+|++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=89.68 E-value=0.3 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-.|+|.|++|+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 37999999999999999999754
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=89.68 E-value=1.5 Score=39.37 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999999754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.67 E-value=0.1 Score=57.02 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|||++|+|||||++.|++-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 8999999999999999999743
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=89.66 E-value=0.18 Score=44.26 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||+|++.+...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEECCCCCcHHHHHHHHHHh
Confidence 6999999999999999999864
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=0.16 Score=48.08 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-++|+|++|+|||||+..|+
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 58999999999999999886
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.59 E-value=0.17 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||+|++.+...
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998743
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=89.58 E-value=0.22 Score=43.48 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=20.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++++.|+|.+||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357999999999999999999874
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=89.56 E-value=0.16 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|.|++|+|||+|++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999743
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=89.56 E-value=0.16 Score=49.78 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 019959 24 VLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~ 42 (333)
++|+|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=0.18 Score=48.38 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|.|++|+|||+|++.+.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.46 E-value=0.17 Score=46.83 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|.|++|+|||+|++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999975
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=89.22 E-value=0.15 Score=46.53 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-.+|+|+.|+|||+|+..+.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 57899999999999999997
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.21 E-value=0.2 Score=47.91 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|++.|+||+|||+|++++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999854
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.21 E-value=0.2 Score=41.87 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||||.-.|...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 5899999999999999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 333 | ||||
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 3e-18 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 1e-17 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 4e-17 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 7e-16 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 2e-15 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 6e-15 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 6e-15 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 1e-14 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 1e-14 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 1e-12 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 3e-11 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 5e-11 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 6e-11 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 3e-10 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 3e-10 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 5e-10 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 6e-10 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 6e-10 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 2e-09 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 2e-09 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 2e-09 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 2e-09 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 4e-09 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 8e-09 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 1e-08 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 1e-08 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 2e-08 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 2e-08 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 3e-08 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 3e-08 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 4e-08 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 6e-08 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 6e-08 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 8e-08 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-07 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 1e-07 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-07 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 1e-07 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-07 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 3e-07 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 4e-07 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 7e-07 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 9e-07 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 1e-06 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-06 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 4e-06 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 5e-06 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 6e-06 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 6e-06 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 7e-06 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 8e-06 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 8e-06 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 1e-05 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 3e-05 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 3e-05 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 1e-04 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 2e-04 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 3e-04 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 3e-04 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 3e-04 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 4e-04 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 6e-04 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 8e-04 | |
| d1jwyb_ | 306 | c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc | 0.002 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 0.002 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.003 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 0.003 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 0.004 |
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.3 bits (192), Expect = 3e-18
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++GDSGVGK+ L+ V+ TIG +K + + +
Sbjct: 4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-------------NGKK 50
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ + Y G+I V+D++ RT T++++W
Sbjct: 51 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW 96
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.1 bits (189), Expect = 1e-17
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++GDSGVGKT ++ + + S TIG ++ I +
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-------------GKR 54
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ + Y G++ V+D++ ++ +++ W
Sbjct: 55 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 100
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.1 bits (186), Expect = 4e-17
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++G+SGVGK+ L+ + + TIG +K + +
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-------------DGKT 54
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ S Y +G+I V+D++ + + ++ W
Sbjct: 55 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 100
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.6 bits (177), Expect = 7e-16
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
+++L +GDSGVGKT+ + + T+G K + Y + G + +S K
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA---F 62
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
++LWD +G ER++ + + G + + DL+ +++ +++ W
Sbjct: 63 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW 109
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (173), Expect = 2e-15
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++G+SGVGK+SL+ + + TIG VK I+
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD-------------GNK 55
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+ +WD +G ER++ Y GVI V+D+++R T L W
Sbjct: 56 AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNW 101
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (169), Expect = 6e-15
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++++G++GVGKT LV +G TIG +K +
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-------------GEK 53
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ Y N +I +D++ + L +W
Sbjct: 54 VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 99
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.6 bits (169), Expect = 6e-15
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+ LV+G++G GK+ L++ ++ + TIG G K I G +
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG-------------GKY 53
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ Y G + V+D++ R T +L W
Sbjct: 54 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 99
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (168), Expect = 1e-14
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 25/140 (17%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+++GDSGVGK++L++ + TIG + I +
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-------------GKT 52
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
++WD +G ERY+ S Y G + V+D+++ T ++++W E+
Sbjct: 53 IKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH------- 105
Query: 143 ASGGPGGLPVPYVVIGNKAD 162
+ +++GNK+D
Sbjct: 106 -----ADSNIVIMLVGNKSD 120
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 68.7 bits (167), Expect = 1e-14
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L++G+S VGKTS + S T+G VK I +++
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-------------NDKR 53
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ERY+ + Y G I ++D++ + ++Q W
Sbjct: 54 IKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW 99
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.0 bits (152), Expect = 1e-12
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V++VGDSGVGKT L+ G + + T TVG+ +
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDG---AFLAGTFISTVGIDFRNK---------VLDVDGVK 55
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ Y + ++ ++D++ + + ++Q W
Sbjct: 56 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW 101
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (142), Expect = 3e-11
Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 26/142 (18%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++ +VVGD VGKT L+ S T+ V + G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG--------------E 49
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
+ + L+D +G E Y R + Y Q + + + + ++++ V T
Sbjct: 50 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-- 107
Query: 142 LASGGPGGLPVPYVVIGNKADV 163
P++++G + D+
Sbjct: 108 ----------TPFLLVGTQIDL 119
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.4 bits (140), Expect = 5e-11
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 25/140 (17%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+ +++GD GVGK+ L++ + + TIG G + I +
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-------------GQK 52
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ER++ Y G + V+D+++R T L W + + +
Sbjct: 53 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI 112
Query: 143 ASGGPGGLPVPYVVIGNKAD 162
++IGNKAD
Sbjct: 113 ------------ILIGNKAD 120
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.1 bits (139), Expect = 6e-11
Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 25/149 (16%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++++++G++ VGK+S+V V TIG + +T +E
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-------------NEH 50
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAP 141
E+WD +G ER+ + Y + V+D+++ ++ + W E+ +
Sbjct: 51 TVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--- 107
Query: 142 LASGGPGGLPVPYVVIGNKADVAAKEGTR 170
+ ++GNK D+ + G R
Sbjct: 108 ---------DIIIALVGNKIDMLQEGGER 127
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.1 bits (134), Expect = 3e-10
Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 25/142 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ +++VVG GVGK++L +++ TI + + +
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID--------------G 48
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
+++ D +G E Y R G + V ++ ++ + ++ +I
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD- 107
Query: 141 PLASGGPGGLPVPYVVIGNKAD 162
VP V++GNK D
Sbjct: 108 ----------DVPMVLVGNKCD 119
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 3e-10
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 13/113 (11%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSI 75
G Q +++++G+S VGK+SLV VKG TIG + +
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL---------- 50
Query: 76 KGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+ E+WD +G ERY + Y I V+D++ + + W
Sbjct: 51 ---DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 100
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (133), Expect = 5e-10
Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 25/142 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ +V+V+G GVGK++L V G+ + TI +
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVD--------------S 48
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
+E+ D +G E++ R + G I V+ L +++ ++ +I +
Sbjct: 49 SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE- 107
Query: 141 PLASGGPGGLPVPYVVIGNKAD 162
VP +++GNK D
Sbjct: 108 ----------KVPVILVGNKVD 119
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 6e-10
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++ +G+ VGKTSL+ + S + TIG K + +R
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-------------DRT 48
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++LWD +G ER++ + V+D++ + KW ++
Sbjct: 49 IRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV 98
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.3 bits (132), Expect = 6e-10
Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 28/169 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+++GD GVGK+SL+N V ++ TIG K +
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-------------DGHF 54
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G ER++ R+ Y + + + ++ +L W E P
Sbjct: 55 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 114
Query: 143 ASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLP 191
+ P+V++GNK D++ ++ + + A+ W G P
Sbjct: 115 S--------FPFVILGNKIDISERQVST-------EEAQAWCRDNGDYP 148
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (129), Expect = 2e-09
Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ R++VVG GVGK++L ++ + TI + + + +
Sbjct: 5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVID--------------D 50
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
R +++ D +G E + R G + V ++ R + + K+ +
Sbjct: 51 RAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQ 101
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (128), Expect = 2e-09
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 25/140 (17%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+ +++GD+GVGK+ L+ TIG G + + +
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-------------DGKQ 51
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++WD +G E ++ Y G + V+D+++R T L W + + +
Sbjct: 52 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--- 108
Query: 143 ASGGPGGLPVPYVVIGNKAD 162
+ ++IGNK+D
Sbjct: 109 ---------MVIMLIGNKSD 119
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (128), Expect = 2e-09
Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 26/147 (17%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSI 75
GP ++ +VVGD VGKT L+ + T+ V G
Sbjct: 4 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGG--------- 54
Query: 76 KGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATS 135
+ + + L+D +G E Y R + Y + + + + ++++ V
Sbjct: 55 -----KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE 109
Query: 136 GTFSAPLASGGPGGLPVPYVVIGNKAD 162
+ VP+++IG + D
Sbjct: 110 YAPN------------VPFLLIGTQID 124
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (127), Expect = 2e-09
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+++G+ VGKTSLV + + T+G + K + +
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-------------GGKR 51
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT 121
+ +WD +G ER+ I Y NG I V+D++ +
Sbjct: 52 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS 90
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 53.0 bits (126), Expect = 4e-09
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 18/108 (16%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++R+L++G GKT+++ + G S T TVG T +
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETV-------------TY 53
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
++ +WD+ G ++ + Y+ G+IFV D + R ++
Sbjct: 54 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQE 101
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (124), Expect = 8e-09
Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 32/180 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ ++++VGD GKT L+ + K T+
Sbjct: 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVD--------------G 47
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
+ + LWD +G E Y R + Y + ++ + + ++ +
Sbjct: 48 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-------- 99
Query: 141 PLASGGPGGLPVPYVVIGNKADVAAKEGTR------GSSGNLVDAARQWVEKQGLLPSSE 194
+ P VP +++GNK D+ E TR + R + G E
Sbjct: 100 -VKHFCPN---VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 155
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.5 bits (122), Expect = 1e-08
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+++V ++GD+GVGK+S++ V+ S + TIG + K + Y
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY-------------QN 50
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
+WD +G ER++ + Y I V+D+++ T ++L+ W E
Sbjct: 51 ELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE 101
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.6 bits (122), Expect = 1e-08
Identities = 35/212 (16%), Positives = 64/212 (30%), Gaps = 40/212 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ +++VVGDS GKT+L+++ K T+
Sbjct: 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEID--------------T 47
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
+ + LWD SG Y + R + Y + V+ D+S+ T S+ K
Sbjct: 48 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ------ 101
Query: 141 PLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTE 200
+++G K+D+ T N + + + E
Sbjct: 102 ------EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 155
Query: 201 -SFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231
S A + +V F +
Sbjct: 156 CS-------------ALQSENSVRDIFHVATL 174
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (122), Expect = 2e-08
Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 28/152 (18%)
Query: 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNS 74
G P ++ +VVGD VGKT L+ + T+ + G
Sbjct: 1 GSPQA--IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-------- 50
Query: 75 IKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIAT 134
+ + LWD +G E Y R + Y Q + + L + +++
Sbjct: 51 ------KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPE-- 102
Query: 135 SGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166
+ P P +++G K D+
Sbjct: 103 -------VRHHCPN---TPIILVGTKLDLRDD 124
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.8 bits (120), Expect = 2e-08
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++V+GDS VGKT L G R TIG + +
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-------------DGER 50
Query: 83 FFVELWDISGHERY-KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
++LWD +G ER+ K Y ++ V+FV+D++ + SL W E
Sbjct: 51 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEE 100
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.9 bits (120), Expect = 3e-08
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+++GDSGVGKTSL+N V ++ TIG K + +R
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-------------DDRL 50
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++WD +G ER++ Y + + V D++ T +L W E
Sbjct: 51 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 100
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.5 bits (119), Expect = 3e-08
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V+++GDSGVGKTSL++ V + TIG K +T D ++
Sbjct: 4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTV------------DGDKV 51
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+++WD +G ER++ Y + + V+D++ + +++ W
Sbjct: 52 ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSW 97
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 4e-08
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 25/146 (17%)
Query: 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIK 76
PP+ +++VVG GVGK++L ++ F K +
Sbjct: 2 PPSETHKLVVVGGGGVGKSALTIQFIQS-YFVSDYDPTIEDSYTKICSVD---------- 50
Query: 77 GDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSG 136
+++ D +G E + R +G + V ++ R++ + K +I
Sbjct: 51 ---GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK 107
Query: 137 TFSAPLASGGPGGLPVPYVVIGNKAD 162
P V++GNKAD
Sbjct: 108 DRD-----------DFPVVLVGNKAD 122
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 6e-08
Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 25/142 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ +++V+G GVGK++L V+G + TI + +
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD--------------C 48
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSA 140
+ +E+ D +G E++ R + G V+ ++ + T LQ +I
Sbjct: 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV----- 103
Query: 141 PLASGGPGGLPVPYVVIGNKAD 162
VP +++GNK D
Sbjct: 104 ------KDTEDVPMILVGNKCD 119
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.9 bits (118), Expect = 6e-08
Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 19/108 (17%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++++L++G GK++ + + P T G +
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRIIHGSGVP--TTGIIEYPFDLQS--------------- 44
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+ D+ G + + + ++F+ LS+
Sbjct: 45 --VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 90
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 49.2 bits (116), Expect = 8e-08
Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 25/138 (18%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+V++VG GVGK++L + T + K + +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD--------------GEE 51
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++ D +G E Y R + G + V +++ + + + +I
Sbjct: 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV------- 104
Query: 143 ASGGPGGLPVPYVVIGNK 160
VP++++GNK
Sbjct: 105 ----KEDENVPFLLVGNK 118
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 48.8 bits (115), Expect = 1e-07
Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 29/147 (19%)
Query: 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSI 75
P +VR+L++G GKT+L+ + S + T G I
Sbjct: 11 SAPDQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFN-----------------I 52
Query: 76 KGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATS 135
K + F + +WDI G + + + + +I+V D + R+ + E+
Sbjct: 53 KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 112
Query: 136 GTFSAPLASGGPGGLPVPYVVIGNKAD 162
S VP ++ NK D
Sbjct: 113 EKLS-----------CVPVLIFANKQD 128
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.2 bits (116), Expect = 1e-07
Identities = 29/222 (13%), Positives = 55/222 (24%), Gaps = 42/222 (18%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83
VL VG GKT L ++ G + +I + + + + +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTG-QYRDTQTSITDSSAIYKVNN-------------NRGNS 48
Query: 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLA 143
+ S V+FV D + + + + L
Sbjct: 49 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQV--------LI 100
Query: 144 SGGPGGLPVPYVVIGNKAD--------------------VAAKEGTRGSSGNLVDAARQW 183
++ NK D + S+ + A
Sbjct: 101 DSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQ 160
Query: 184 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225
+ K+G +LPL F D + + K+
Sbjct: 161 LGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKW 202
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 48.1 bits (113), Expect = 1e-07
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 18/109 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
R+L+VG GKT+++ + G T T+G T ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLG-EIV----TTIPTIGFNVETV-------------EYKN 43
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
+WD+ G ++ + + G+IFV D + R ++ +
Sbjct: 44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 92
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.2 bits (113), Expect = 1e-07
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++++VVG+ VGK+S++ KG +TIG + I ++
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-------------NDE 49
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
D + LWD +G E + Y + V + R + ++ W
Sbjct: 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW 96
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 47.7 bits (112), Expect = 2e-07
Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 18/111 (16%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++R+L++G GKT+++ G S T+G +
Sbjct: 2 ELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEH----------------- 43
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
R F + +WD+ G + + + +G+I+V D + R+ Q+
Sbjct: 44 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQS 94
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.4 bits (111), Expect = 3e-07
Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 18/109 (16%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
++L +G GKT+L++++ + T+ T + +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKND-RLA----TLQPTWHPTSEEL-------------AIGN 43
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
+D+ GH + + + ++NG++F+ D + +
Sbjct: 44 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDA 92
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 47.7 bits (112), Expect = 4e-07
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
++R+L++G G GKT+++ + G T T+G T S
Sbjct: 17 ELRILILGLDGAGKTTILYRLQIGEVV-----TTKPTIGFNVETL-------------SY 58
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
++ + +WD+ G + Y+ VIFV D + + ++ K +
Sbjct: 59 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLM 110
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.8 bits (110), Expect = 7e-07
Identities = 12/108 (11%), Positives = 35/108 (32%), Gaps = 20/108 (18%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
V++L++G GK++ + + R T G+ +
Sbjct: 2 LVKILLLGAGESGKSTFLKQM-------RIIHGQDPTKGIHEYDF-------------EI 41
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
++ ++ D+ G + + + ++F+ S+ +
Sbjct: 42 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 89
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.2 bits (108), Expect = 9e-07
Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 14/110 (12%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++VVGD GVGK++L + F +KH +
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQK-IFVPDYDPTIEDSYLKHTEID-------------NQW 51
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+++ D +G E + R +G + V+ ++ + + + ++ I
Sbjct: 52 AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 101
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (107), Expect = 1e-06
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCT 57
++R+ V+GD+ GK+SL++ + G S+ +T
Sbjct: 5 ELRLGVLGDARSGKSSLIHRFLTG-SYQVLEKTESEQ 40
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 44.7 bits (104), Expect = 3e-06
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHI 63
++R+L++G G GKT+++ + G TIG V
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVG-EVVTTIPTIGFNVETVTY 46
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.7 bits (105), Expect = 4e-06
Identities = 18/144 (12%), Positives = 43/144 (29%), Gaps = 22/144 (15%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
R+L++G GK+++V + T G +
Sbjct: 8 RLLLLGAGESGKSTIVKQMRILH----VVLTSG--IFETKFQVD---------------K 46
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
++D+ G + ++ + +IFV S + + +
Sbjct: 47 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 106
Query: 143 ASGGPGGLPVPYVVIGNKADVAAK 166
+ + ++ NK D+ A+
Sbjct: 107 WN-NRWLRTISVILFLNKQDLLAE 129
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.2 bits (103), Expect = 5e-06
Identities = 14/108 (12%), Positives = 38/108 (35%), Gaps = 22/108 (20%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+V++L++G GK+++V + + G+ + +
Sbjct: 2 EVKLLLLGAGESGKSTIVKQMKII-HEA--------GTGIVETHF-------------TF 39
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKW 128
+D +++D+ G + + + +IF LS + +
Sbjct: 40 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 87
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 43.8 bits (102), Expect = 6e-06
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 18/111 (16%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSE 80
+ +V++VG GKT+++ T+G
Sbjct: 15 EHKVIIVGLDNAGKTTILYQFSMN-----EVVHTSPTIGSNVEEI-------------VI 56
Query: 81 RDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVE 131
+ +WDI G E + + Y+ VI V D + R + ++ +
Sbjct: 57 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYK 107
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 6e-06
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITY 65
Q ++++VGD G GKT+ V + G + T+G V
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT 47
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 7e-06
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGC 56
+V++ + G +GVGK++LV + T+
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES 37
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 8e-06
Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 24/140 (17%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
RV V G GVGK+SLV VKG+ T+ T +
Sbjct: 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCD--------------KSI 49
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
+++ D +G ++ + + S+ + I V+ ++ R++ L+ +I
Sbjct: 50 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-- 107
Query: 143 ASGGPGGLPVPYVVIGNKAD 162
+P +++GNK D
Sbjct: 108 --------SIPIMLVGNKCD 119
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 8e-06
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITY 65
+VL++G GVGK++L + G ++ G T +
Sbjct: 3 KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVD 44
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 42.8 bits (99), Expect = 1e-05
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQT 53
++ + +VG GKT+ VN+I G T
Sbjct: 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPT 34
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 3e-05
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGS-SFSRPSQTIGC 56
RV+++G+ GVGK++L N+ S + +G
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE 39
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKGS 45
++ ++G VGK+SL V+G
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVEGQ 28
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 40.0 bits (92), Expect = 1e-04
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
R+++VG VGK++L+N ++ + + G T V G + R
Sbjct: 2 RMVIVGKPNVGKSTLLNRLL-NEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWA 129
+L + G ER + I + I V+FV D S + +
Sbjct: 61 ETNDLVERLGIERTL--QEIEKADI--VLFVLDASSPLDEEDRKILE 103
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.0 bits (92), Expect = 2e-04
Identities = 18/148 (12%), Positives = 38/148 (25%), Gaps = 22/148 (14%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++ G GKTSL+ L+ T+ + Y
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTD----SVRPTVVSQEPLSAADY---------------DG 45
Query: 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPL 142
V L D GH + R L + +++ +
Sbjct: 46 SGVTLVDFPGHVK---LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS 102
Query: 143 ASGGPGGLPVPYVVIGNKADVAAKEGTR 170
+ + ++ NK+++
Sbjct: 103 ITESSCENGIDILIACNKSELFTARPPS 130
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 39.8 bits (92), Expect = 3e-04
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 11/114 (9%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSF---SRPSQTIGCTVGVKHITYGSSGSSSNSIKGD 78
+ +LV+G GVGK+S VN I+ S+ + + D
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG------FTLNIID 86
Query: 79 SERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEI 132
+ + K +L I+ +++V L R + A I
Sbjct: 87 TPGLIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAI 138
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 38.9 bits (89), Expect = 3e-04
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 21 QVRVLVVGDSGVGKTSLVNLIVKG 44
+++ +G GKT+L++++
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDD 36
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 3e-04
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 12 ELNGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITY 65
++ P + V G S GK+S +N + S +R S+T G T +
Sbjct: 7 DIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 38.6 bits (88), Expect = 4e-04
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCT 57
P G + + G S VGK+S +N ++ + +R S G T
Sbjct: 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKT 59
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (86), Expect = 6e-04
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSG 69
++V++ G GK+SL+N + G + + G T V G
Sbjct: 2 MKVVIAGRPNAGKSSLLNALA-GREAAIVTDIAGTTRDVLREHIHIDG 48
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.6 bits (89), Expect = 8e-04
Identities = 20/144 (13%), Positives = 38/144 (26%), Gaps = 30/144 (20%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
+ V V G++G GK+S +N + + + G +
Sbjct: 57 LNVAVTGETGSGKSSFINTLRGIGNEEEGA-----------AKTGVVEVTMERHPYKHPN 105
Query: 82 DFFVELWDISGHERYKDCRSILYSQIN---GVIFVHDLSQRRTKTSLQKWAVEIATSGTF 138
V WD+ G ++ F+ + R K + A I+
Sbjct: 106 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDID-IAKAISMMK-- 162
Query: 139 SAPLASGGPGGLPVPYVVIGNKAD 162
+ + K D
Sbjct: 163 -------------KEFYFVRTKVD 173
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Score = 37.5 bits (86), Expect = 0.002
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82
+++VVG GK+S++ IV G F P + T + + + + +
Sbjct: 26 QIVVVGSQSSGKSSVLENIV-GRDFL-PRGSGIVTRRPLILQLTHLPIADDGSQTQEWGE 83
Query: 83 FF 84
F
Sbjct: 84 FL 85
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 36.3 bits (82), Expect = 0.002
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCT 57
VL+VG VGK++L N +V + G T
Sbjct: 3 VLIVGRPNVGKSTLFNKLV-KKKKAIVEDEEGVT 35
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 35.7 bits (81), Expect = 0.003
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 23 RVLVVGDSGVGKTSLVNLIV 42
++++ G+ GVGKT+LV IV
Sbjct: 2 KIIITGEPGVGKTTLVKKIV 21
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 35.8 bits (81), Expect = 0.003
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSER 81
++V +VG VGK++L N I+ + S G T G + R
Sbjct: 9 IKVAIVGRPNVGKSTLFNAIL-NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67
Query: 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQ 118
+ + + + + V+ V D +Q
Sbjct: 68 RKS-RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ 103
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 35.4 bits (80), Expect = 0.004
Identities = 24/143 (16%), Positives = 39/143 (27%), Gaps = 9/143 (6%)
Query: 24 VLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDF 83
++ G S VGK++L+ + R + G T K I + G
Sbjct: 3 IIFAGRSNVGKSTLIYRLTG--KKVRRGKRPGVT--RKIIEIEWKNHKIIDMPGFGFMMG 58
Query: 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLA 143
+ + I+ + V D + EI F L
Sbjct: 59 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR 118
Query: 144 SGGPGGLPVPYVVIGNKADVAAK 166
+P +V NK D
Sbjct: 119 ELD-----IPTIVAVNKLDKIKN 136
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 333 | |||
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.98 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.98 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.98 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.97 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.97 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.97 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.97 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.95 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.95 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.95 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.95 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.94 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.92 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.9 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.89 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.88 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.88 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.88 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.87 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.87 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.85 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.84 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.83 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.81 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.81 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.81 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.8 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.78 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.78 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.78 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.78 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.76 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.75 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.71 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.7 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.7 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.65 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.63 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.62 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.58 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.56 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.45 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.45 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.45 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.33 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.28 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.25 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.24 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.18 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.04 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.79 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.77 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.68 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.68 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.64 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.61 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.53 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.17 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.68 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.66 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.61 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.47 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.31 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.19 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.16 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.82 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.62 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 96.59 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.5 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.46 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.37 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.34 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.31 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.23 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.22 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.05 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.05 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.98 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.94 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.87 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.86 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.84 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.79 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.79 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 95.75 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.74 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.69 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.67 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.66 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 95.59 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 95.55 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 95.52 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.49 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.49 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 95.48 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 95.47 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.47 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.41 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.38 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 95.36 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 95.35 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.34 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 95.33 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 95.21 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.21 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.2 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.19 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 95.12 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.04 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 94.98 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.98 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 94.98 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 94.94 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 94.94 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.89 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.88 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.84 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.8 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 94.79 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 94.76 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.7 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.65 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 94.61 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.59 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.51 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.48 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.42 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 94.37 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 94.36 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.36 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.33 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.31 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 94.24 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.0 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.97 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.87 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.81 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.78 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 93.77 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.68 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.65 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.5 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.48 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.4 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.4 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.39 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.23 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.96 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.8 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.73 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.66 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.65 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.59 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.38 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.29 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.18 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.05 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.95 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.8 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.77 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.63 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.62 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 91.61 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.03 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.02 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 90.95 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.85 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 90.79 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 90.75 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.6 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.58 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.2 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 90.12 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.89 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.84 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.82 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.77 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.7 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 89.63 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.63 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 89.32 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.12 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 89.08 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.07 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.86 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 88.83 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.69 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.28 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.09 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.02 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.02 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.0 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.46 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.22 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 87.09 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 86.87 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 86.5 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.42 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 86.38 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 86.29 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 86.23 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 85.88 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 85.62 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 85.13 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.0 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 84.71 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.46 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 84.43 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 83.83 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 82.42 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 81.47 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 80.67 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.33 |
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3e-34 Score=241.01 Aligned_cols=162 Identities=20% Similarity=0.354 Sum_probs=147.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|+|++|||||||+++|+++.+...+.+|++.++....+... +..+.+.+|||+|++++..+.
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~-------------~~~~~~~i~d~~g~~~~~~~~ 68 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVN-------------DEDVRLMLWDTAGQEEFDAIT 68 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEET-------------TEEEEEEEECCTTGGGTTCCC
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeec-------------CceeeeeeeccCCccchhhhh
Confidence 3799999999999999999999999999999999998888888776 678999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++++|||+++++||+++..|+.++.+... ++|++|||||+|+.++ +.+.. +++
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-------------~~~iilVgnK~Dl~~~--~~v~~----~~~ 129 (164)
T d1z2aa1 69 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-------------DIPTALVQNKIDLLDD--SCIKN----EEA 129 (164)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-------------SCCEEEEEECGGGGGG--CSSCH----HHH
T ss_pred hhhhccCceEEEEEeccchhhhhhcccccccccccCC-------------CceEEEeeccCCcccc--eeeee----hhh
Confidence 9999999999999999999999999999999987743 7999999999999876 66764 789
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++++++++ ++|+| |||++|.||+++|+.+++.++
T Consensus 130 ~~~~~~~~-------~~~~e---------~Sak~g~~v~e~f~~l~~~~l 163 (164)
T d1z2aa1 130 EGLAKRLK-------LRFYR---------TSVKEDLNVSEVFKYLAEKHL 163 (164)
T ss_dssp HHHHHHHT-------CEEEE---------CBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHcC-------CEEEE---------eccCCCcCHHHHHHHHHHHHh
Confidence 99999988 46888 999999999999999988775
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.1e-34 Score=240.30 Aligned_cols=164 Identities=24% Similarity=0.407 Sum_probs=142.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|+++.|...+.+|.+.++..+.+..+ +..+.+.+||++|++++..+
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~d~~g~~~~~~~ 68 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIG-------------GKRVNLAIWDTAGQERFHAL 68 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESS-------------SCEEEEEEEECCCC------
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccC-------------CccceeeeeccCCcceeccc
Confidence 56899999999999999999999999999999999999988888876 67899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||+++++||+++..|+..+..... ...|++|||||+|+..+ +.|+. ++
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~------------~~~~~ilvgnK~Dl~~~--~~v~~----~e 130 (167)
T d1z08a1 69 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG------------NEICLCIVGNKIDLEKE--RHVSI----QE 130 (167)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG------------GGSEEEEEEECGGGGGG--CCSCH----HH
T ss_pred chhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccc------------cccceeeeccccccccc--cccch----HH
Confidence 99999999999999999999999999999988766532 36899999999999876 67774 88
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+++++++++ ++|+| |||++|.||+++|+.|++.++
T Consensus 131 ~~~~a~~~~-------~~~~e---------~Sak~~~~v~e~F~~l~~~i~ 165 (167)
T d1z08a1 131 AESYAESVG-------AKHYH---------TSAKQNKGIEELFLDLCKRMI 165 (167)
T ss_dssp HHHHHHHTT-------CEEEE---------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CeEEE---------EecCCCcCHHHHHHHHHHHHh
Confidence 999999988 46888 999999999999999988775
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-33 Score=236.60 Aligned_cols=167 Identities=26% Similarity=0.420 Sum_probs=150.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|+++.+...+.++.+.++..+.+.++ +..+.+.+|||+|+++|..+
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~e~~~~~ 70 (171)
T d2ew1a1 4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-------------GEKVKLQIWDTAGQERFRSI 70 (171)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGHHH
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEEC-------------CEEEEEEEEECCCchhhHHH
Confidence 46899999999999999999999999999999999999999998886 67899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++.+|+.+..|+..+..... ..+|++|||||+|+.+. +.++. ++
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~~~ilvgnK~D~~~~--~~v~~----~~ 132 (171)
T d2ew1a1 71 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS------------NKVITVLVGNKIDLAER--REVSQ----QR 132 (171)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CSSCH----HH
T ss_pred HHHHHhccceEEEeeecccchhhhhhhhhhhhhccccc------------ccccEEEEEeecccccc--cchhh----hH
Confidence 99999999999999999999999999999998877643 46899999999999865 56663 78
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++++..+ ++|+| |||++|.||+++|..+++.++...
T Consensus 133 ~~~~~~~~~-------~~~~~---------~SAktg~gV~e~f~~l~~~l~~~~ 170 (171)
T d2ew1a1 133 AEEFSEAQD-------MYYLE---------TSAKESDNVEKLFLDLACRLISEA 170 (171)
T ss_dssp HHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-------CEEEE---------EccCCCCCHHHHHHHHHHHHHHhc
Confidence 999999988 46888 999999999999999998887653
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-33 Score=238.31 Aligned_cols=169 Identities=22% Similarity=0.297 Sum_probs=147.7
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh
Q 019959 17 PPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY 96 (333)
Q Consensus 17 ~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~ 96 (333)
|+...+||+|||++|||||||+++|+++.|...+.+|.+ +...+.+.++ +..+.+.+||++|++++
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~-------------~~~~~l~~~d~~g~~~~ 67 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVD-------------GIPARLDILDTAGQEEF 67 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEET-------------TEEEEEEEEECCCTTTT
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccC-------------Ceeeeeecccccccccc
Confidence 456779999999999999999999999999888888754 5556777766 67899999999999999
Q ss_pred hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccH
Q 019959 97 KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 176 (333)
Q Consensus 97 ~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~ 176 (333)
..++..+++++|++|+|||++++.||+.+..|+..+.+... ..++|++|||||+|+... +.+.
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~p~ilvgnK~Dl~~~--~~~~---- 130 (173)
T d2fn4a1 68 GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-----------RDDFPVVLVGNKADLESQ--RQVP---- 130 (173)
T ss_dssp SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-----------SSCCCEEEEEECGGGGGG--CCSC----
T ss_pred ccccchhhccceeeeeecccccccccchhhhhhHHHHHHhc-----------cCCCceEEEEEeechhhc--cccc----
Confidence 99999999999999999999999999999999999876532 247899999999999865 5565
Q ss_pred HHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 177 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.++++.++++++ ++|+| |||++|.||+++|+.+++.+.+.
T Consensus 131 ~~~~~~~~~~~~-------~~~~e---------~Sak~g~gv~e~f~~l~~~i~k~ 170 (173)
T d2fn4a1 131 RSEASAFGASHH-------VAYFE---------ASAKLRLNVDEAFEQLVRAVRKY 170 (173)
T ss_dssp HHHHHHHHHHTT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHhcC-------CEEEE---------EeCCCCcCHHHHHHHHHHHHHHH
Confidence 388999999988 56888 99999999999999999988654
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-33 Score=237.38 Aligned_cols=164 Identities=21% Similarity=0.283 Sum_probs=144.8
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|+++.|...+.+|++.++ .+.+.++ +..+.+.+||++|.+++..+
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~d~~g~~~~~~~ 68 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVN-------------GQEYHLQLVDTAGQDEYSIF 68 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEET-------------TEEEEEEEEECCCCCTTCCC
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecC-------------cEEEEeeecccccccccccc
Confidence 457999999999999999999999999999999999876 4566665 68899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..++..+|++|+|||+++++||+.+..|+.++.+... ..++|++|||||+|+... +.|+. ++
T Consensus 69 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilvgnK~Dl~~~--r~v~~----~~ 131 (167)
T d1xtqa1 69 PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-----------KVQIPIMLVGNKKDLHME--RVISY----EE 131 (167)
T ss_dssp CGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHC-----------SSCCCEEEEEECTTCGGG--CCSCH----HH
T ss_pred cchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccc-----------ccccceeeeccccccccc--cchhH----HH
Confidence 99999999999999999999999999999999877632 247999999999999765 67774 88
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+++|+++++ ++|+| |||++|.||+++|+.+++++.
T Consensus 132 ~~~~a~~~~-------~~~~e---------~Sak~~~~v~~~f~~li~~~~ 166 (167)
T d1xtqa1 132 GKALAESWN-------AAFLE---------SSAKENQTAVDVFRRIILEAE 166 (167)
T ss_dssp HHHHHHHHT-------CEEEE---------CCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CEEEE---------EecCCCCCHHHHHHHHHHHhc
Confidence 999999998 46888 999999999999988887764
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-33 Score=240.61 Aligned_cols=171 Identities=19% Similarity=0.315 Sum_probs=144.9
Q ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 14 NGGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 14 ~~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
..+|....+||+|||++|||||||+++|+++.|...+.+|++. ...+.+.+. +..+.+.+||++|+
T Consensus 2 ~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~-------------~~~~~l~i~D~~g~ 67 (185)
T d2atxa1 2 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVG-------------GKQYLLGLYDTAGQ 67 (185)
T ss_dssp SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESS-------------SCEEEEEEECCCCS
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeC-------------CceEEeeccccccc
Confidence 3567788899999999999999999999999999999999874 445666554 67899999999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc------
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK------ 166 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~------ 166 (333)
+.|..++..+++++|++|+|||+++++||+++. .|...+.... .++|+++||||+|+.+.
T Consensus 68 e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~-------------~~~~~ilvgnK~Dl~~~~~~~~~ 134 (185)
T d2atxa1 68 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-------------PNVPFLLIGTQIDLRDDPKTLAR 134 (185)
T ss_dssp SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------TTCCEEEEEECTTSTTCHHHHHH
T ss_pred chhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcC-------------CCCCeeEeeeccccccchhhhhh
Confidence 999999999999999999999999999999875 4555555553 37999999999999752
Q ss_pred ----cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 167 ----EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 167 ----~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
..+.|+ .+++++++++++. ++|+| |||++|.||+++|+.+++.++
T Consensus 135 ~~~~~~r~v~----~~~~~~~a~~~~~------~~~~E---------~SAk~~~gv~e~F~~li~~il 183 (185)
T d2atxa1 135 LNDMKEKPIC----VEQGQKLAKEIGA------CCYVE---------CSALTQKGLKTVFDEAIIAIL 183 (185)
T ss_dssp HTTTTCCCCC----HHHHHHHHHHHTC------SCEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred hhhccccccc----HHHHHHHHHHcCC------CEEEE---------ecCCCCcCHHHHHHHHHHHHc
Confidence 225566 4889999999985 56888 999999999999999888764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-33 Score=234.99 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=128.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|++..+.. ..++.+.. ..+.+.++ +..+.+.+||++|++++..++.
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~-~~~~i~~~-------------~~~~~l~i~D~~g~e~~~~~~~ 66 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHT-YDRSIVVD-------------GEEASLMVYDIWEQDGGRWLPG 66 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC----------CEE-EEEEEEET-------------TEEEEEEEEECC-------CHH
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeee-ecceeecc-------------ccccceeeeecccccccceecc
Confidence 799999999999999999999887643 34444443 45566665 6789999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.+++++|++|+|||++++.||+++..|+.++..... ..++|++|||||+|+.+. +.++. ++++
T Consensus 67 ~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~-----------~~~~piilvgnK~Dl~~~--~~v~~----~~~~ 129 (168)
T d2gjsa1 67 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-----------TDDVPIILVGNKSDLVRS--REVSV----DEGR 129 (168)
T ss_dssp HHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECTTCGGG--CCSCH----HHHH
T ss_pred cchhhhhhhceeccccccccccccccccchhhcccc-----------cccceEEEeecccchhhh--cchhH----HHHH
Confidence 999999999999999999999999999999977642 247899999999999876 66764 8899
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++++.++ ++|+| |||++|.||+++|+.+++.+..+.
T Consensus 130 ~~~~~~~-------~~~~e---------~Sak~~~~v~~~f~~l~~~i~~~~ 165 (168)
T d2gjsa1 130 ACAVVFD-------CKFIE---------TSAALHHNVQALFEGVVRQIRLRR 165 (168)
T ss_dssp HHHHHHT-------SEEEE---------CBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-------CEEEE---------EeCCCCcCHHHHHHHHHHHHHHHh
Confidence 9999998 56888 999999999999999998876653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.5e-33 Score=235.01 Aligned_cols=165 Identities=25% Similarity=0.429 Sum_probs=147.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|||++|||||||+++|+++.+...+.++.+.++..+.+... +..+.+++|||+|++++..+
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~wDt~G~e~~~~~ 70 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRN-------------DKRIKLQIWDTAGQERYRTI 70 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGHHH
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEee-------------cceEEEEEEECCCchhhHHH
Confidence 56899999999999999999999999999999999999988888776 67889999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||+++++++..+..|+..+..... .+.|++|||||+|+... +.++. ++
T Consensus 71 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iivv~nK~D~~~~--~~v~~----~~ 132 (169)
T d3raba_ 71 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW------------DNAQVLLVGNKCDMEDE--RVVSS----ER 132 (169)
T ss_dssp HHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC------------SCCEEEEEEECTTCGGG--CCSCH----HH
T ss_pred HHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccC------------CcceEEEEEeecccccc--cccch----hh
Confidence 99999999999999999999999999998887766542 47899999999999876 56664 78
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
+++++++++ ++|+| |||++|.|++++|+.+++.+++
T Consensus 133 ~~~~~~~~~-------~~~~e---------~Sak~g~gv~e~f~~l~~~i~e 168 (169)
T d3raba_ 133 GRQLADHLG-------FEFFE---------ASAKDNINVKQTFERLVDVICE 168 (169)
T ss_dssp HHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHT
T ss_pred hHHHHHHcC-------CEEEE---------ecCCCCcCHHHHHHHHHHHHhh
Confidence 899999988 46888 9999999999999999988764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=2.7e-33 Score=236.37 Aligned_cols=164 Identities=19% Similarity=0.328 Sum_probs=142.2
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.|...+.+|++.++. +.+.++ +..+.+.+||++|++++..+
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~-------------~~~~~l~i~d~~g~~~~~~~ 68 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD-------------GEEVQIDILDTAGQEDYAAI 68 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEET-------------TEEEEEEEEECCC---CHHH
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccc-------------cccccccccccccccchhhh
Confidence 3579999999999999999999999999999999987764 455555 67899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++.||+.+..|+.++.+... ..++|++|||||+|+.+. +.|+. ++
T Consensus 69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piiivgnK~Dl~~~--~~v~~----~~ 131 (168)
T d1u8za_ 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-----------DENVPFLLVGNKSDLEDK--RQVSV----EE 131 (168)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-----------CTTSCEEEEEECGGGGGG--CCSCH----HH
T ss_pred hhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhC-----------CCCCcEEEEecccccccc--ccccH----HH
Confidence 99999999999999999999999999999999877632 247999999999999765 67774 88
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++++++.++ ++|+| |||++|.||+++|+.+++.+.
T Consensus 132 ~~~~~~~~~-------~~~~e---------~Sak~g~gv~e~f~~l~~~i~ 166 (168)
T d1u8za_ 132 AKNRADQWN-------VNYVE---------TSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CeEEE---------EcCCCCcCHHHHHHHHHHHHH
Confidence 999999998 46888 999999999999999988764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.3e-33 Score=235.32 Aligned_cols=165 Identities=19% Similarity=0.321 Sum_probs=145.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+++|++|||||||+++|+++.+...+.+|++..+ .+.+.++ +..+.+.+||++|++.+..+
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~d~~g~~~~~~~ 68 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEID-------------NQWAILDVLDTAGQEEFSAM 68 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEET-------------TEEEEEEEEECCSCGGGCSS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccc-------------cccccccccccccccccccc
Confidence 368999999999999999999999999999999987654 5556555 67899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++++|||++++.||+++..|+.++.+... ..++|+||||||+|+... +.|+. ++
T Consensus 69 ~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~-----------~~~~p~ilvgnK~Dl~~~--~~v~~----e~ 131 (169)
T d1x1ra1 69 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-----------RESFPMILVANKVDLMHL--RKVTR----DQ 131 (169)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-----------SSCCCEEEEEECTTCSTT--CCSCH----HH
T ss_pred hhhhhhhccEEEEecccccchhhhccchhhHHHHhhcc-----------ccCccEEEEecccchhhh--ceeeh----hh
Confidence 99999999999999999999999999999999876632 237899999999999876 67774 88
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc-CHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~-~v~~~~~~l~~~l~~ 231 (333)
+++++++++ ++|+| ||||++. ||+++|+.+++.+.+
T Consensus 132 ~~~~~~~~~-------~~~~e---------~Sak~~~~nV~~~F~~l~~~i~~ 168 (169)
T d1x1ra1 132 GKEMATKYN-------IPYIE---------TSAKDPPLNVDKTFHDLVRVIRQ 168 (169)
T ss_dssp HHHHHHHHT-------CCEEE---------EBCSSSCBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CEEEE---------EcCCCCCcCHHHHHHHHHHHHHh
Confidence 999999998 46888 9999875 999999999988765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.8e-33 Score=233.32 Aligned_cols=163 Identities=25% Similarity=0.411 Sum_probs=146.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+++||+|||++|||||||+++|+++.|...+.+|.+.++.......+ +..+.+.+||++|++++..+
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~d~~g~~~~~~~ 69 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-------------NELHKFLIWDTAGLERFRAL 69 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGGGG
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCccccccccccccccccccc-------------ccccceeeeecCCchhhhHH
Confidence 57999999999999999999999999999999999988887777765 67788999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++++|+.+..|+..+..... .+.|++|||||+|+.+. +.++. ++
T Consensus 70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iilvgnK~Dl~~~--~~v~~----~~ 131 (167)
T d1z0ja1 70 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP------------PSIVVAIAGNKCDLTDV--REVME----RD 131 (167)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTSEEEEEEECTTCGGG--CCSCH----HH
T ss_pred HHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccC------------CcceEEEecccchhccc--cchhH----HH
Confidence 99999999999999999999999999999988877653 47899999999999765 66774 88
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++++++++ ++|+| |||++|.||+++|..+++.|
T Consensus 132 ~~~~~~~~~-------~~~~e---------~SAk~~~nV~e~f~~l~~~i 165 (167)
T d1z0ja1 132 AKDYADSIH-------AIFVE---------TSAKNAININELFIEISRRI 165 (167)
T ss_dssp HHHHHHHTT-------CEEEE---------CBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHHHHcC-------CEEEE---------EecCCCCCHHHHHHHHHHhC
Confidence 999999988 56888 99999999999999888764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-33 Score=234.72 Aligned_cols=165 Identities=20% Similarity=0.246 Sum_probs=141.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|||++|||||||+++|+++.|...+.+|++.++..... .+ +..+.+.+||++|++.+. .+
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~-~~-------------~~~~~l~i~D~~g~~~~~-~~ 66 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-ID-------------DEVVSMEILDTAGQEDTI-QR 66 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEE-ET-------------TEEEEEEEEECCCCCCCH-HH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccccc-cc-------------ccceEEEEeecccccccc-cc
Confidence 5899999999999999999999999999999999988755544 33 678999999999998875 45
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||++++.||+++..|+..+..... ..++|+++||||+|+..+ +.|+. +++
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilvgnK~Dl~~~--r~V~~----~e~ 129 (168)
T d2atva1 67 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-----------PKNVTLILVGNKADLDHS--RQVST----EEG 129 (168)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-----------TSCCCEEEEEECGGGGGG--CCSCH----HHH
T ss_pred hhhhcccccceeecccCCccchhhhhhhccccccccc-----------ccCcceeeeccchhhhhh--ccCcH----HHH
Confidence 5688999999999999999999999988766554422 137899999999999866 67774 889
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCc-CHHHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~-~v~~~~~~l~~~l~~~~ 233 (333)
++++++++ ++|+| |||++|. ||+++|..+++.+.+++
T Consensus 130 ~~~a~~~~-------~~~~e---------~Saktg~gnV~e~F~~l~~~i~~~r 167 (168)
T d2atva1 130 EKLATELA-------CAFYE---------CSACTGEGNITEIFYELCREVRRRR 167 (168)
T ss_dssp HHHHHHHT-------SEEEE---------CCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-------CeEEE---------EccccCCcCHHHHHHHHHHHHHHhc
Confidence 99999998 46888 9999998 59999999999988765
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-33 Score=237.44 Aligned_cols=164 Identities=23% Similarity=0.259 Sum_probs=140.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.|||+|+|++|||||||+++|+++.|...+.+|++..+ .....++ +..+.+.+||++|++.+...
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~-------------~~~~~l~~~d~~g~~~~~~~ 66 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCD-------------KSICTLQITDTTGSHQFPAM 66 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEET-------------TEEEEEEEEECCSCSSCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeec-------------cccceecccccccccccccc
Confidence 368999999999999999999999999999999998665 3344444 67899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++++|+++..|+..+.+.... ..++|++|||||+|+.+. +.++. ++
T Consensus 67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~----------~~~~piilVgnK~Dl~~~--~~v~~----~e 130 (171)
T d2erxa1 67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGD----------VESIPIMLVGNKCDESPS--REVQS----SE 130 (171)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC-------------CCCEEEEEECGGGGGG--CCSCH----HH
T ss_pred ccccccceeEEEEEeecccccchhcccchhhhhhhhhcc----------CCCCcEEEEeeccccccc--ccccH----HH
Confidence 999999999999999999999999999999888764211 247899999999999766 67774 88
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++++++.++ ++|+| |||++|.||+++|+.|++.+
T Consensus 131 ~~~~~~~~~-------~~~~e---------~Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 131 AEALARTWK-------CAFME---------TSAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp HHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHcC-------CeEEE---------EcCCCCcCHHHHHHHHHHHH
Confidence 999999998 56888 99999999999998887643
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-32 Score=231.88 Aligned_cols=163 Identities=26% Similarity=0.480 Sum_probs=146.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|||++|||||||+++|+++.+...+.++.+.++....+.++ +..+.+.+||++|++++..+
T Consensus 3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~i~D~~g~~~~~~~ 69 (166)
T d1z0fa1 3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-------------GQKIKLQIWDTAGQERFRAV 69 (166)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEET-------------TEEEEEEEEECTTGGGTCHH
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEEC-------------CEEEEEEEeccCCchhHHHH
Confidence 46899999999999999999999999999999999999988888876 67899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||+++.+||+.+..|+..+..... ...|+++||||+|+... +.+. .++
T Consensus 70 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iilvgnK~Dl~~~--~~~~----~~~ 131 (166)
T d1z0fa1 70 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN------------PNTVIILIGNKADLEAQ--RDVT----YEE 131 (166)
T ss_dssp HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----HHH
T ss_pred HHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhcc------------ccceEEEEcccccchhh--cccH----HHH
Confidence 99999999999999999999999999999998877653 47899999999999765 4555 378
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++++++.+ ++|+| |||++|.||+++|+.+++.|
T Consensus 132 ~~~~~~~~~-------~~~~e---------~Saktg~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 132 AKQFAEENG-------LLFLE---------ASAKTGENVEDAFLEAAKKI 165 (166)
T ss_dssp HHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHh
Confidence 999999987 46888 99999999999999988765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-32 Score=232.15 Aligned_cols=164 Identities=25% Similarity=0.364 Sum_probs=142.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+++||+|||++|||||||+++|+++.|...+.++++. +..+.+.++ +..+.+.+||++|++.+..+
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~-------------~~~~~l~~~d~~g~~~~~~~ 67 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVD-------------SSPSVLEILDTAGTEQFASM 67 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEET-------------TEEEEEEEEECCCTTCCHHH
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-eeeeeeecC-------------cceEeeccccCCCccccccc
Confidence 5799999999999999999999999999999998874 445566655 67899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++.+|.++..|+.++..... ..++|++|||||+|+... +.+.. ++
T Consensus 68 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilvgnK~Dl~~~--~~~~~----~~ 130 (167)
T d1kaoa_ 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-----------YEKVPVILVGNKVDLESE--REVSS----SE 130 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-----------TSCCCEEEEEECGGGGGG--CCSCH----HH
T ss_pred hHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-----------CCCCCEEEEEEccchhhc--ccchH----HH
Confidence 99999999999999999999999999999999877643 247999999999999865 55663 78
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++.++++++ ++|+| |||++|.||+++|+.+++.|.
T Consensus 131 ~~~~~~~~~-------~~~~e---------~Sak~g~~i~e~f~~i~~~i~ 165 (167)
T d1kaoa_ 131 GRALAEEWG-------CPFME---------TSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHT-------SCEEE---------ECTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CeEEE---------ECCCCCcCHHHHHHHHHHHHc
Confidence 999999988 46888 999999999888888877653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.7e-33 Score=232.05 Aligned_cols=161 Identities=23% Similarity=0.354 Sum_probs=144.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
|||+|||++|||||||+++|+++++...+.++++.+........+ +..+.+.+||++|++++...+.
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~d~~g~~~~~~~~~ 67 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-------------DRTIRLQLWDTAGQERFRSLIP 67 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECS-------------SCEEEEEEEEECCSGGGGGGHH
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccC-------------CCceeeeecccCCcchhccchH
Confidence 699999999999999999999999999999999888877777765 6789999999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..+|++|+|||++++.||+++..|+.++..... .++|++|||||+|+.+. +.+. .+++.
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~------------~~~~iilvgnK~Dl~~~--~~~~----~~~~~ 129 (164)
T d1yzqa1 68 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG------------SDVIIMLVGNKTDLADK--RQVS----IEEGE 129 (164)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT------------TSSEEEEEEECTTCGGG--CCSC----HHHHH
T ss_pred HHhhccceEEEeeccccccchhhhHhhHHHHHHhcC------------CCceEEEEecccchhhh--hhhh----HHHHH
Confidence 999999999999999999999999999999887642 47999999999999765 5555 38899
Q ss_pred HHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 182 ~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+++++++ ++|+| |||++|.||+++|+.|++.|
T Consensus 130 ~~~~~~~-------~~~~e---------~SAk~g~~v~e~f~~i~~~l 161 (164)
T d1yzqa1 130 RKAKELN-------VMFIE---------TSAKAGYNVKQLFRRVAAAL 161 (164)
T ss_dssp HHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHS
T ss_pred HHHHHcC-------CEEEE---------ecCCCCcCHHHHHHHHHHhh
Confidence 9999988 46888 99999999999999887754
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.9e-34 Score=240.14 Aligned_cols=161 Identities=24% Similarity=0.382 Sum_probs=138.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|+|++|||||||+++|+++.|...+.+|++.++..+.+..+ +..+.+.+|||+|++++..++
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~-------------~~~~~l~i~D~~g~~~~~~~~ 69 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-------------RGPIKFNVWDTAGQEKFGGLR 69 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBT-------------TCCEEEEEEECTTHHHHSSCG
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccc-------------cccccccccccccccccceec
Confidence 6899999999999999999999999999999999999988887765 678999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++++|++|+|||+++++||+++..|+.++.... .++|++|||||+|+.... +. +++
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-------------~~~piilvgnK~Dl~~~~---~~-----~~~ 128 (170)
T d1i2ma_ 70 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-------------ENIPIVLCGNKVDIKDRK---VK-----AKS 128 (170)
T ss_dssp GGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH-------------CSCCEEEEEECCCCSCSC---CT-----TTS
T ss_pred chhcccccchhhccccccccccchhHHHHHHHhhcc-------------CCCceeeecchhhhhhhh---hh-----hHH
Confidence 999999999999999999999999999999988774 379999999999997652 22 335
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
..++++.+ ++|+| |||++|.||+++|+.|++.|+.
T Consensus 129 ~~~~~~~~-------~~~~e---------~Sak~~~~v~e~f~~l~~~l~~ 163 (170)
T d1i2ma_ 129 IVFHRKKN-------LQYYD---------ISAKSNYNFEKPFLWLARKLIG 163 (170)
T ss_dssp HHHHSSCS-------SEEEE---------EBTTTTBTTTHHHHHHHHHHHT
T ss_pred HHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHcc
Confidence 56666665 67888 9999999999999999988764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-32 Score=232.29 Aligned_cols=165 Identities=21% Similarity=0.310 Sum_probs=143.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+++||+|||++|||||||+++|+++.|...+.+|++..+ .+.+..+ +..+.+.+||++|++.+..+
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~~~d~~g~~~~~~~ 67 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVD-------------CQQCMLEILDTAGTEQFTAM 67 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESS-------------SCEEEEEEEEECSSCSSTTH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEee-------------eeEEEeccccccCccccccc
Confidence 578999999999999999999999999999999988766 4444544 67899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++.||+++..|+..+.+... ..++|++|||||+|+... +.+. .++
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-----------~~~~p~ilvgnK~Dl~~~--~~~~----~~~ 130 (167)
T d1c1ya_ 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-----------TEDVPMILVGNKCDLEDE--RVVG----KEQ 130 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-----------CSCCCEEEEEECTTCGGG--CCSC----HHH
T ss_pred ccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcC-----------CCCCeEEEEEEecCcccc--cccc----hhH
Confidence 99999999999999999999999999999999876532 247899999999999876 5555 378
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+.+++++++. ++|+| |||++|.||+++|+.+++.|.
T Consensus 131 ~~~~~~~~~~------~~~~e---------~Sak~g~gv~e~F~~l~~~i~ 166 (167)
T d1c1ya_ 131 GQNLARQWCN------CAFLE---------SSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHTTS------CEEEE---------CBTTTTBSHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC------CEEEE---------EcCCCCcCHHHHHHHHHHHhc
Confidence 8899888652 57888 999999999999999988764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-32 Score=233.44 Aligned_cols=164 Identities=21% Similarity=0.296 Sum_probs=138.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
+.||+|+|++|||||||+++|+++.|...+.+|++.. ..+...++ +..+.+.|||++|++.|..++
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~-~~~~~~~~-------------~~~~~l~i~D~~g~~~~~~~~ 67 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVD-------------GKQVELALWDTAGLEDYDRLR 67 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEET-------------TEEEEEEEEEECCSGGGTTTG
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cccccccc-------------ccceeeeccccCccchhcccc
Confidence 4799999999999999999999999999999998744 45555554 678899999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHH-HHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------CC
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKW-AVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE----------GT 169 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~----------~r 169 (333)
..+++++|++|+|||+++++||+++..| ...+.... .++|++|||||+|+.... .+
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-------------~~~piilvgnK~Dl~~~~~~~~~~~~~~~~ 134 (177)
T d1kmqa_ 68 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-------------PNVPIILVGNKKDLRNDEHTRRELAKMKQE 134 (177)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------TTSCEEEEEECGGGTTCHHHHHHHHHTTCC
T ss_pred hhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhC-------------CCCceEEeeecccccchhhHHHHHHHhhcc
Confidence 9999999999999999999999998665 45555543 379999999999997531 13
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.++ .+++++++++++. ++|+| |||++|.||+++|+.+++.++
T Consensus 135 ~v~----~~e~~~~a~~~~~------~~~~E---------~SAkt~~gi~e~F~~i~~~~l 176 (177)
T d1kmqa_ 135 PVK----PEEGRDMANRIGA------FGYME---------CSAKTKDGVREVFEMATRAAL 176 (177)
T ss_dssp CCC----HHHHHHHHHHTTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred ccc----HHHHHHHHHHcCC------cEEEE---------ecCCCCcCHHHHHHHHHHHHh
Confidence 455 4889999999985 46788 999999999999999888765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-32 Score=232.17 Aligned_cols=163 Identities=26% Similarity=0.434 Sum_probs=146.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
-++||+|||++|||||||+++|+++.|...+.++.+.++....+... +..+.+.+||++|+++|..+
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~d~~g~~~~~~~ 71 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-------------DTTVKFEIWDTAGQERYHSL 71 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGGGG
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeecc-------------ceEEEEEeccCCCchhhhhh
Confidence 46899999999999999999999999999999999998888877765 67899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||+++.++|+++..|...+.+... +++|++|||||+|+..+ +.++. ++
T Consensus 72 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iilvgnK~Dl~~~--~~v~~----e~ 133 (170)
T d1r2qa_ 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS------------PNIVIALSGNKADLANK--RAVDF----QE 133 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CCSCH----HH
T ss_pred HHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccC------------CCceEEeeccccccccc--ccccH----HH
Confidence 99999999999999999999999999999999877643 47999999999999876 67774 88
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++++++.++ ++|+| |||++|.||+++|+.|++.|
T Consensus 134 ~~~~~~~~~-------~~~~e---------~SAk~g~~V~e~f~~l~~~i 167 (170)
T d1r2qa_ 134 AQSYADDNS-------LLFME---------TSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHhcC-------CEEEE---------eeCCCCCCHHHHHHHHHHHH
Confidence 999999887 57888 99999999999998887754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-32 Score=230.36 Aligned_cols=166 Identities=22% Similarity=0.324 Sum_probs=141.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
..++||+|||++|||||||+++|+++.|...+.+|.+. ...+.+.++ +..+.+.+||++|++++..
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~-------------~~~~~~~~~d~~g~~~~~~ 68 (171)
T d2erya1 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCVID-------------DRAARLDILDTAGQEEFGA 68 (171)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE-EEEEEEEET-------------TEEEEEEEEECC----CCH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCccccc-ceeeeeeec-------------ccccccccccccccccccc
Confidence 34689999999999999999999999999888888774 556666665 6789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
.+..+++.+|++|+|||++++.||+.+..|+.++..... ....|+||||||+|+... +.+.. +
T Consensus 69 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ilvgnK~Dl~~~--~~v~~----~ 131 (171)
T d2erya1 69 MREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD-----------RDEFPMILIGNKADLDHQ--RQVTQ----E 131 (171)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-----------SSCCSEEEEEECTTCTTS--CSSCH----H
T ss_pred cccccccccceEEEeeccccccchhhHHHHhHHHHhhcc-----------cCCCCEEEEEeccchhhh--ccchH----H
Confidence 999999999999999999999999999999988776532 237899999999999766 66764 8
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++++++++ ++|+| |||++|.||+++|+.+++.+.+
T Consensus 132 ~~~~~~~~~~-------~~~~e---------~Sak~~~~i~e~f~~l~~~i~k 168 (171)
T d2erya1 132 EGQQLARQLK-------VTYME---------ASAKIRMNVDQAFHELVRVIRK 168 (171)
T ss_dssp HHHHHHHHTT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CEEEE---------EcCCCCcCHHHHHHHHHHHHHH
Confidence 8999999988 56888 9999999999999999988754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-32 Score=231.17 Aligned_cols=168 Identities=22% Similarity=0.419 Sum_probs=145.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|||++|||||||+++|+++.+...+.++.+.+......... +..+.+.+||++|++.+..+
T Consensus 2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~d~~g~~~~~~~ 68 (173)
T d2a5ja1 2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID-------------GKQIKLQIWDTAGQESFRSI 68 (173)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEET-------------TEEEEEEEECCTTGGGTSCC
T ss_pred eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeee-------------eeEEEEEeecccCccchhhH
Confidence 46899999999999999999999999988888888888877777765 57889999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..++..+|++|+|||++++.||+++..|+.++.+... .++|++|||||+|+... +.+. .++
T Consensus 69 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~------------~~~piilv~nK~D~~~~--~~~~----~~~ 130 (173)
T d2a5ja1 69 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS------------SNMVIMLIGNKSDLESR--RDVK----REE 130 (173)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----HHH
T ss_pred HHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCC------------CCCeEEEEecCCchhhh--hhhH----HHH
Confidence 99999999999999999999999999999999887643 47999999999998765 4555 388
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+..+++.++ ++|+| |||++|.||+++|..+++.+.++..
T Consensus 131 ~~~~a~~~~-------~~~~e---------~Sa~tg~~V~e~f~~i~~~i~~~~~ 169 (173)
T d2a5ja1 131 GEAFAREHG-------LIFME---------TSAKTACNVEEAFINTAKEIYRKIQ 169 (173)
T ss_dssp HHHHHHHHT-------CEEEE---------ECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CEEEE---------ecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999988 46888 9999999999999999999887654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-32 Score=235.06 Aligned_cols=179 Identities=23% Similarity=0.446 Sum_probs=151.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|+++.+...+.++.+.++..+.+.++.... .........+.+.+|||+|+++|..+
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~dt~G~e~~~~~ 80 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGP---NGSSGKAFKVHLQLWDTAGQERFRSL 80 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC----------CCEEEEEEEEEEEESHHHHHHH
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccc---cccccccceEEeccccCCcchhhHHH
Confidence 468999999999999999999999999999999999998888887753211 01112245678999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++++|++|+|||++++.+|+.+..|+.++..+.. ...+|++|||||+|+... +.++. ++
T Consensus 81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~iilv~nK~Dl~~~--~~v~~----~e 143 (186)
T d2f7sa1 81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY-----------CENPDIVLIGNKADLPDQ--REVNE----RQ 143 (186)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCT-----------TTCCEEEEEEECTTCGGG--CCSCH----HH
T ss_pred HHHHHhcCCEEEEEEeccccccceeeeeccchhhhhcc-----------CCCceEEEEeeeccchhh--hcchH----HH
Confidence 99999999999999999999999999999988765532 246899999999999876 67774 88
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+.+++++++ ++|+| |||++|.|++++|+.+++.+.++..
T Consensus 144 ~~~~~~~~~-------~~~~e---------~Sak~~~~i~e~f~~l~~~i~~k~~ 182 (186)
T d2f7sa1 144 ARELADKYG-------IPYFE---------TSAATGQNVEKAVETLLDLIMKRME 182 (186)
T ss_dssp HHHHHHHTT-------CCEEE---------EBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999988 46888 9999999999999999999887643
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=9.1e-32 Score=227.73 Aligned_cols=168 Identities=23% Similarity=0.421 Sum_probs=149.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|+++.+...+.++.+.+.....+..+ +..+.+.+|||+|++++..+
T Consensus 4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~~~~ 70 (174)
T d2bmea1 4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG-------------GKYVKLQIWDTAGQERFRSV 70 (174)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEET-------------TEEEEEEEEEECCSGGGHHH
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEec-------------CcceeEEEEECCCchhhhhh
Confidence 56899999999999999999999999999999998888877777665 67889999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.+|++|+|||++++++|..+..|+..+..... .++|++|||||+|+... +.+.. +.
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piivv~nK~D~~~~--~~~~~----~~ 132 (174)
T d2bmea1 71 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS------------QNIVIILCGNKKDLDAD--REVTF----LE 132 (174)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGG--CCSCH----HH
T ss_pred HHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccC------------CceEEEEEEecccccch--hchhh----hH
Confidence 99999999999999999999999999999999887643 47999999999999765 55553 77
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
+.++++..+ ++|+| |||++|.|++++|+.+++.++++..
T Consensus 133 ~~~~~~~~~-------~~~~e---------~Sak~~~gi~e~f~~l~~~i~~~~~ 171 (174)
T d2bmea1 133 ASRFAQENE-------LMFLE---------TSALTGENVEEAFVQCARKILNKIE 171 (174)
T ss_dssp HHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-------CEEEE---------eeCCCCcCHHHHHHHHHHHHHHHHh
Confidence 889998877 57888 9999999999999999999887643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=8.3e-32 Score=227.91 Aligned_cols=172 Identities=25% Similarity=0.419 Sum_probs=133.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|||++|||||||+++|+++.+...+.++.+.+.........+ ...+.+.+|||+|++++..++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------------~~~~~~~~~d~~g~~~~~~~~ 69 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG------------DKVATMQVWDTAGQERFQSLG 69 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSS------------SCCEEEEEECCC---------
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecC------------cccccceeeccCCchhhhhHH
Confidence 58999999999999999999999999988888888777666665432 556789999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++.+|++|+|||++++.||+.+..|+.++...... ....++|++|||||+|+.+.. +.++ .+++
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--------~~~~~~piilv~nK~Dl~~~~-~~v~----~~~~ 136 (175)
T d1ky3a_ 70 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANV--------NSPETFPFVILGNKIDAEESK-KIVS----EKSA 136 (175)
T ss_dssp -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCC--------SCTTTCCEEEEEECTTSCGGG-CCSC----HHHH
T ss_pred HHHhhccceEEEEeecccccccchhhhcchhhhhhhhh--------cccccCcEEEEecccchhhhh-cchh----HHHH
Confidence 99999999999999999999999999999998765321 112478999999999997642 3344 4788
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++++. ++|+| |||++|.||+++|+.+++.++++
T Consensus 137 ~~~~~~~~~------~~~~e---------~SA~~g~gv~e~f~~l~~~~l~~ 173 (175)
T d1ky3a_ 137 QELAKSLGD------IPLFL---------TSAKNAINVDTAFEEIARSALQQ 173 (175)
T ss_dssp HHHHHHTTS------CCEEE---------EBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC------CeEEE---------EeCCCCcCHHHHHHHHHHHHHhc
Confidence 999999874 57888 99999999999999999988775
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=9.1e-32 Score=226.89 Aligned_cols=163 Identities=20% Similarity=0.403 Sum_probs=144.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|||++|||||||+++|+++.|...+.+|.+.++..+.+... +..+.+.+||++|++++..++
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~-------------~~~~~l~i~d~~g~~~~~~~~ 69 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTIN-------------EHTVKFEIWDTAGQERFASLA 69 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-------------TEEEEEEEEEECCSGGGGGGH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccc-------------cccccccccccCCchhHHHHH
Confidence 5899999999999999999999999999999999999988888876 688999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc-CCccCcccHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE-GTRGSSGNLVDA 179 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~-~r~v~~~~~~~~ 179 (333)
..++.++|++|+|||++++.||+++..|+.++..... ...|+++|+||+|+.+.. .+.+.. ++
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~~~~v~nk~d~~~~~~~~~v~~----~~ 133 (170)
T d1ek0a_ 70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS------------KDIIIALVGNKIDMLQEGGERKVAR----EE 133 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECGGGGGSSCCCCSCH----HH
T ss_pred HHHHhccceEEEEEeCCcccchhhhhhhhhhhccccc------------cccceeeeecccccccccchhhhhH----HH
Confidence 9999999999999999999999999999988776543 468999999999997543 356664 88
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+++++++++ ++|+| |||++|.||+++|+.|++.
T Consensus 134 ~~~~~~~~~-------~~~~e---------~Sak~g~gV~e~F~~i~~~ 166 (170)
T d1ek0a_ 134 GEKLAEEKG-------LLFFE---------TSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp HHHHHHHHT-------CEEEE---------CCTTTCTTHHHHHHHHHTT
T ss_pred HHHHHHHcC-------CEEEE---------ecCCCCcCHHHHHHHHHHH
Confidence 999999988 56888 9999999999998887654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=7e-32 Score=226.83 Aligned_cols=164 Identities=21% Similarity=0.360 Sum_probs=143.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+++||+|||++|||||||+++|+++.+...+.++++.++..... .. +..+.+.+||++|++.+...
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~l~~~d~~~~~~~~~~ 67 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-ID-------------GETCLLDILDTAGQEEYSAM 67 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEE-ET-------------TEEEEEEEEEECCCGGGHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecccee-ee-------------ceeeeeeeeeccCccccccc
Confidence 46899999999999999999999999999999999887755543 33 57899999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..+++.++++|+|||++++.+|+++..|+..+.+... ..++|+++||||+|+.. +.+. .++
T Consensus 68 ~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~---~~~~----~~~ 129 (166)
T d1ctqa_ 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-----------SDDVPMVLVGNKCDLAA---RTVE----SRQ 129 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-----------CSSCCEEEEEECTTCSC---CCSC----HHH
T ss_pred hhhhhhcccccceeecccccccHHHHHHHHHHHHHhcC-----------CCCCeEEEEeccccccc---cccc----HHH
Confidence 99999999999999999999999999999999887642 24789999999999965 3455 388
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
++++++.++ ++|+| |||++|.||+++|+.+++.+.+
T Consensus 130 ~~~~~~~~~-------~~~~e---------~Sak~g~gi~e~f~~i~~~i~~ 165 (166)
T d1ctqa_ 130 AQDLARSYG-------IPYIE---------TSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-------CeEEE---------EcCCCCcCHHHHHHHHHHHHHh
Confidence 999999988 46888 9999999999999999887643
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.4e-31 Score=226.95 Aligned_cols=168 Identities=25% Similarity=0.448 Sum_probs=145.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+.+||+|||++|||||||+++|+++.+...+.++.+.+...+.+.++ +..+.+.|||++|+++|..
T Consensus 2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~d~~g~e~~~~ 68 (175)
T d2f9la1 2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-------------GKTIKAQIWDTAGQERYRR 68 (175)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEET-------------TEEEEEEEEECSSGGGTTC
T ss_pred CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEEC-------------CEEEEEEecccCCcHHHHH
Confidence 356899999999999999999999999999888888888888888776 6789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++++|++|+|||+++++||..+..|+.++..... .++|++|||||+|+.+. +... .+
T Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~------------~~~piilvgnK~Dl~~~--~~~~----~~ 130 (175)
T d2f9la1 69 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD------------SNIVIMLVGNKSDLRHL--RAVP----TD 130 (175)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCGGG--CCSC----HH
T ss_pred HHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcC------------CCCcEEEEEeeeccccc--ccch----HH
Confidence 999999999999999999999999999999999988753 47899999999999865 3444 36
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
.+..++...+ ++|+| |||++|.|++++|+.+++.+.+..
T Consensus 131 ~~~~~~~~~~-------~~~~e---------~Sa~~g~~i~e~f~~l~~~i~~~~ 169 (175)
T d2f9la1 131 EARAFAEKNN-------LSFIE---------TSALDSTNVEEAFKNILTEIYRIV 169 (175)
T ss_dssp HHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccC-------ceEEE---------EecCCCcCHHHHHHHHHHHHHHHh
Confidence 6677777766 46888 999999999999999999987643
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1e-31 Score=231.11 Aligned_cols=165 Identities=18% Similarity=0.289 Sum_probs=138.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|++|||||||+++|+++.|...+.+|++..+ .+....+ +..+.+.|||++|+++|..+
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~D~~g~~~~~~~ 67 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIG-------------GEPYTLGLFDTAGQEDYDRL 67 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEET-------------TEEEEEEEEEECCSGGGTTT
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEeeC-------------Cceeeeeccccccchhhhhh
Confidence 358999999999999999999999999999999988544 4445444 67889999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----------cC
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK----------EG 168 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~----------~~ 168 (333)
+..+++++|++|+|||+++++||+++.. |...+.... .++|+++||||+|+.+. ..
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-------------~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~ 134 (191)
T d2ngra_ 68 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-------------PKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134 (191)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTCCEEEEEECGGGGGCHHHHHHHHTTTC
T ss_pred hhhcccccceeecccccchHHHHHHHHHHHHHHHhhcC-------------CCCceEEEeccccccccchhhhhhhhccc
Confidence 9999999999999999999999999976 555555543 37999999999998643 22
Q ss_pred CccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 169 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 169 r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+.|+. +++++|+++++. ++|+| |||++|.||+++|+.+++.++
T Consensus 135 ~~v~~----~~~~~~~~~~~~------~~~~e---------~SAk~~~~V~e~f~~l~~~~~ 177 (191)
T d2ngra_ 135 KPITP----ETAEKLARDLKA------VKYVE---------CSALTQKGLKNVFDEAILAAL 177 (191)
T ss_dssp CCCCH----HHHHHHHHHTTC------SCEEE---------CCTTTCTTHHHHHHHHHHHHT
T ss_pred ccccH----HHHHHHHHHcCC------CeEEE---------EeCCCCcCHHHHHHHHHHHHh
Confidence 45664 889999999763 56888 999999999999888876654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.9e-31 Score=227.73 Aligned_cols=166 Identities=20% Similarity=0.277 Sum_probs=139.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
++.+||+|||++|||||||+++|+++.|...+.+|++.. ..+.+..+ +..+.+.+||++|++.|..
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~-~~~~~~~~-------------~~~~~~~~~d~~g~~~~~~ 68 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVD-------------GKPVNLGLWDTAGQEDYDR 68 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEET-------------TEEEEEEEECCCCSGGGTT
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeec-eeeeeecc-------------CcceEEEeecccccccchh
Confidence 567999999999999999999999999999999998754 44555554 6789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc----------
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE---------- 167 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~---------- 167 (333)
++..+++++|++|+|||+++++||+++.. |...+.... .++|++|||||+|+.+..
T Consensus 69 ~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~-------------~~~piilvgnK~Dl~~~~~~~~~~~~~~ 135 (183)
T d1mh1a_ 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-------------PNTPIILVGTKLDLRDDKDTIEKLKEKK 135 (183)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------TTSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred hhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhC-------------CCCcEEEEeecccchhhhhhhhhhhhcc
Confidence 99999999999999999999999999965 666666554 378999999999986531
Q ss_pred CCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 168 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 168 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+.+. ..++..++++++. ++|+| |||++|.||+++|+.+++.++
T Consensus 136 ~~~~~----~~~~~~~a~~~~~------~~~~E---------~SAk~~~~V~e~F~~l~~~il 179 (183)
T d1mh1a_ 136 LTPIT----YPQGLAMAKEIGA------VKYLE---------CSALTQRGLKTVFDEAIRAVL 179 (183)
T ss_dssp CCCCC----HHHHHHHHHHTTC------SEEEE---------CCTTTCTTHHHHHHHHHHHHS
T ss_pred ccchh----hHHHHHHHHHcCC------ceEEE---------cCCCCCcCHHHHHHHHHHHHc
Confidence 12223 3678889998884 57888 999999999999888887663
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.7e-31 Score=222.47 Aligned_cols=170 Identities=25% Similarity=0.450 Sum_probs=144.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
+...+||+|||++|||||||+++|+++.+...+.+|++..+..+.+..+ +..+.+.+||++|+.++.
T Consensus 3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~d~~g~~~~~ 69 (174)
T d1wmsa_ 3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-------------GHFVTMQIWDTAGQERFR 69 (174)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEET-------------TEEEEEEEEECCCCGGGH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeec-------------CceeeEeeecccCcceeh
Confidence 4567899999999999999999999999999999999998888888776 678999999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
..+..++..+|++++|||++++.||+.+..|+.++...... ....++|++|||||+|+.+ +.++.
T Consensus 70 ~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~--------~~~~~~piilVgnK~Dl~~---~~v~~---- 134 (174)
T d1wmsa_ 70 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV--------KEPESFPFVILGNKIDISE---RQVST---- 134 (174)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC--------SCTTTSCEEEEEECTTCSS---CSSCH----
T ss_pred hhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhcc--------ccCCCceEEEeccccchhh---ccCcH----
Confidence 99999999999999999999999999999999988765321 1124789999999999964 56664
Q ss_pred HHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+++++++++.+. ++|+| |||++|.||+++|+.+++.++
T Consensus 135 ~~~~~~~~~~~~------~~~~e---------~Sak~~~gI~e~f~~l~~~il 172 (174)
T d1wmsa_ 135 EEAQAWCRDNGD------YPYFE---------TSAKDATNVAAAFEEAVRRVL 172 (174)
T ss_dssp HHHHHHHHHTTC------CCEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC------CeEEE---------EcCCCCcCHHHHHHHHHHHHh
Confidence 889999998763 57888 999999999999999888775
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.2e-31 Score=225.35 Aligned_cols=165 Identities=16% Similarity=0.224 Sum_probs=137.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC---chh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG---HER 95 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G---~e~ 95 (333)
..|||+|+|++|||||||+++|++..+. ....++.+.++..+.+.++ +..+.+.+||+++ +++
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~g~e~ 68 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVD-------------GESATIILLDMWENKGENE 68 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEET-------------TEEEEEEEECCTTTTHHHH
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccC-------------Cceeeeeeecccccccccc
Confidence 3589999999999999999999987654 3455677888888888876 6788899999764 565
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
| ++..+++++|++|+|||++++.||+++..|+.++..... ..++|++|||||+|+.+. +.++.
T Consensus 69 ~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-----------~~~~piilvgnK~Dl~~~--~~v~~-- 131 (172)
T d2g3ya1 69 W--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-----------TEDIPIILVGNKSDLVRC--REVSV-- 131 (172)
T ss_dssp H--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-----------GTTSCEEEEEECTTCGGG--CCSCH--
T ss_pred c--cccccccccceeeeeecccccchhhhhhhhhhhhhhccc-----------cCCceEEEEecccccccc--ccccH--
Confidence 5 566789999999999999999999999999999876532 247999999999999876 67774
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++++.++ ++|+| |||++|.|++++|+.+++.+..+
T Consensus 132 --~~~~~~a~~~~-------~~~~e---------~Sak~g~~i~~~f~~l~~~i~~r 170 (172)
T d2g3ya1 132 --SEGRACAVVFD-------CKFIE---------TSAAVQHNVKELFEGIVRQVRLR 170 (172)
T ss_dssp --HHHHHHHHHHT-------CEEEE---------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcC-------CeEEE---------EeCCCCcCHHHHHHHHHHHHHHc
Confidence 88999999998 56888 99999999999999999987654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1e-31 Score=227.43 Aligned_cols=167 Identities=23% Similarity=0.425 Sum_probs=119.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+.+||+|||++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.+|||+|++.|..
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~D~~G~e~~~~ 70 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-------------GKRIKLQIWDTAGQERFRT 70 (173)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEET-------------TEEEEEEEEEC--------
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEEC-------------CEEEEEEEEECCCchhhHH
Confidence 456899999999999999999999999999999999999999999886 6789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++++|++|+|||++++.||+.+..|+..+..... .++|+++||||+|+... +.+. .+
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iilv~~k~D~~~~--~~~~----~~ 132 (173)
T d2fu5c1 71 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS------------ADVEKMILGNKCDVNDK--RQVS----KE 132 (173)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEEC--CCSC--CCSC----HH
T ss_pred HHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhcc------------CCceEEEEEecccchhh--cccH----HH
Confidence 999999999999999999999999999999999876643 47999999999999875 4444 36
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++..++...+ ++|+| |||++|.|++++|+.+++.|..+
T Consensus 133 ~~~~~~~~~~-------~~~~e---------~Sa~~g~gv~e~f~~l~~~i~~k 170 (173)
T d2fu5c1 133 RGEKLALDYG-------IKFME---------TSAKANINVENAFFTLARDIKAK 170 (173)
T ss_dssp HHHHHHHHHT-------CEEEE---------CCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 7888888887 56888 99999999999999999988654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.1e-31 Score=226.87 Aligned_cols=168 Identities=24% Similarity=0.440 Sum_probs=149.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|||++|||||||+++|+++.+...+.+|.+.++....+.++ +..+.+.||||+|+++|..
T Consensus 4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~-------------~~~~~l~i~Dt~G~e~~~~ 70 (194)
T d2bcgy1 4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD-------------GKTVKLQIWDTAGQERFRT 70 (194)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEET-------------TEEEEEEEECCTTTTTTTC
T ss_pred CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEe-------------eEEEEEEEEECCCchhhHH
Confidence 467899999999999999999999999999999999999888888876 6789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++.+|++|+|||++++++|..+..|+..+..... .++|++|||||+|+.+. +.+.. +
T Consensus 71 ~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~------------~~~~iilv~nK~D~~~~--~~~~~----~ 132 (194)
T d2bcgy1 71 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT------------STVLKLLVGNKCDLKDK--RVVEY----D 132 (194)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------------TTCEEEEEEECTTCTTT--CCSCH----H
T ss_pred HHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhccc------------CCceEEEEEeccccccc--cchhH----H
Confidence 999999999999999999999999999999888876543 47899999999999876 55663 7
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
++..+++..+ ++|+| |||++|.|++++|+.+++.+....
T Consensus 133 ~~~~~~~~~~-------~~~~e---------~SAk~g~gi~e~f~~l~~~i~~~~ 171 (194)
T d2bcgy1 133 VAKEFADANK-------MPFLE---------TSALDSTNVEDAFLTMARQIKESM 171 (194)
T ss_dssp HHHHHHHHTT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHhhhhhccC-------cceEE---------EecCcCccHHHHHHHHHHHHHHHh
Confidence 8888888877 46888 999999999999999998887643
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.2e-31 Score=222.32 Aligned_cols=164 Identities=24% Similarity=0.418 Sum_probs=135.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
..+||+|||++|||||||+++|+++.+.. .+.++++.++....+... +..+.++||||+|++++..
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~e~~~~ 71 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVD-------------GVKVKLQMWDTAGQERFRS 71 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEET-------------TEEEEEEEEECCCC-----
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEec-------------CcEEEEEEEECCCchhhHH
Confidence 46899999999999999999999998754 456667888887777766 6789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..+++++|++|+|||++++.+|..+..|+..+..... ...|+++|+||+|+... +.++. +
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iilv~~k~d~~~~--~~v~~----~ 133 (170)
T d2g6ba1 72 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ------------HDVALMLLGNKVDSAHE--RVVKR----E 133 (170)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECCSTTSC--CCSCH----H
T ss_pred HHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccC------------CCceEEEEEeeechhhc--ccccH----H
Confidence 999999999999999999999999999999888776642 46899999999999876 56664 7
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
++.++++.++ ++|+| |||++|.|++++|+.+++.|.
T Consensus 134 ~~~~~~~~~~-------~~~~e---------~Sak~g~gi~e~f~~l~~~i~ 169 (170)
T d2g6ba1 134 DGEKLAKEYG-------LPFME---------TSAKTGLNVDLAFTAIAKELK 169 (170)
T ss_dssp HHHHHHHHHT-------CCEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-------CEEEE---------EeCCCCcCHHHHHHHHHHHcC
Confidence 8999999988 46888 999999999999999988764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.6e-31 Score=226.55 Aligned_cols=165 Identities=22% Similarity=0.287 Sum_probs=138.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|+|++|||||||+++|+++.|...+.+|++..+ .+.+.++ +..+.+.+||++|++.+..++
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~ 67 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID-------------TQRIELSLWDTSGSPYYDNVR 67 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECS-------------SCEEEEEEEEECCSGGGTTTG
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecc-ccccccc-------------ceEEeeccccccccccccccc
Confidence 47999999999999999999999999999999987544 4555554 688999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHH-HHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc----------cCC
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKW-AVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK----------EGT 169 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~----------~~r 169 (333)
..+++++|++|+|||+++++||+.+..| ...+.... .++|++|||||+|+... ..+
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-------------~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~ 134 (179)
T d1m7ba_ 68 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-------------PNTKMLLVGCKSDLRTDVSTLVELSNHRQT 134 (179)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred cchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccC-------------CcceEEEEEecccccccchhhHHHhhhhcC
Confidence 9999999999999999999999998765 45455553 37999999999998642 224
Q ss_pred ccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcC-HHHHHHHHHHHHHH
Q 019959 170 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFRMLIR 231 (333)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~-v~~~~~~l~~~l~~ 231 (333)
.|+. +++.+++++++. ++|+| |||++|.| ++++|+.+.+.+++
T Consensus 135 ~V~~----~e~~~~a~~~~~------~~y~E---------~SAk~~~n~i~~~F~~~~~~~l~ 178 (179)
T d1m7ba_ 135 PVSY----DQGANMAKQIGA------ATYIE---------CSALQSENSVRDIFHVATLACVN 178 (179)
T ss_dssp CCCH----HHHHHHHHHHTC------SEEEE---------CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred cchH----HHHHHHHHHhCC------CeEEE---------EeCCCCCcCHHHHHHHHHHHHhc
Confidence 5664 889999999885 56888 99999985 88888888877764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.3e-30 Score=218.31 Aligned_cols=160 Identities=26% Similarity=0.481 Sum_probs=138.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh-
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD- 98 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~- 98 (333)
+.+||+|||++|||||||+++|+++++...+.++.+..+..+.+.+. .....+.+||++|.+.+..
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 67 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID-------------GERIKIQLWDTAGQERFRKS 67 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET-------------TEEEEEEEEECCCSHHHHTT
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeee-------------ccceEEEEEeccCchhhccc
Confidence 35899999999999999999999999999999999988888888776 6788999999999877765
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
.+..+++++|++|+|||+++++||+++..|+.++.+... ..++|++|||||+|+.+. +.|+. +
T Consensus 68 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~pi~lvgnK~Dl~~~--~~v~~----~ 130 (165)
T d1z06a1 68 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-----------ANDIPRILVGNKCDLRSA--IQVPT----D 130 (165)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-----------CSCCCEEEEEECTTCGGG--CCSCH----H
T ss_pred cceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhcc-----------CCCCeEEEEeccccchhc--cchhH----H
Confidence 467789999999999999999999999999999987643 247999999999999876 66774 8
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccC---cCHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEA---RYDKEAVMKF 225 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g---~~v~~~~~~l 225 (333)
++++++++++ ++|+| ||||+| .||+++|+.|
T Consensus 131 ~~~~~~~~~~-------~~~~e---------~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 131 LAQKFADTHS-------MPLFE---------TSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp HHHHHHHHTT-------CCEEE---------CCSSSGGGGSCHHHHHHHH
T ss_pred HHHHHHHHCC-------CEEEE---------EecccCCcCcCHHHHHHHh
Confidence 8999999998 46888 999974 4788877765
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-30 Score=218.99 Aligned_cols=164 Identities=24% Similarity=0.487 Sum_probs=140.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
.+||+|||++|||||||+++|+++.+...+.+|++.++..+.+.++ +..+.+.+|||+|+++|..++
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~-------------~~~~~~~i~Dt~G~~~~~~~~ 68 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-------------GKKVKLQIWDTAGQERFRTIT 68 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESS-------------SCEEEEEEECCTTGGGTSCCC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEEC-------------CEEEEEEEEECCCchhhHHHH
Confidence 4899999999999999999999999999999999999999999876 678999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..+++++|++|+|||++++.||+.+..|+..+..... ...|+++++||.|+... .+. .+++
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~~i~~~~k~d~~~~---~~~----~~~~ 129 (166)
T d1g16a_ 69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN------------DEAQLLLVGNKSDMETR---VVT----ADQG 129 (166)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC------------TTCEEEEEEECTTCTTC---CSC----HHHH
T ss_pred HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcccc------------Ccceeeeecchhhhhhh---hhh----HHHH
Confidence 9999999999999999999999999999888877653 46889999999998754 344 3889
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
+.++++++ ++|+| |||++|.|++++|+.+++.+.++
T Consensus 130 ~~~~~~~~-------~~~~~---------~Sa~~~~~v~e~f~~l~~~i~~k 165 (166)
T d1g16a_ 130 EALAKELG-------IPFIE---------SSAKNDDNVNEIFFTLAKLIQEK 165 (166)
T ss_dssp HHHHHHHT-------CCEEE---------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-------CeEEE---------ECCCCCCCHHHHHHHHHHHHHhc
Confidence 99999988 46888 99999999999999999887654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=2.7e-30 Score=220.61 Aligned_cols=171 Identities=27% Similarity=0.463 Sum_probs=147.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
-+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+... +..+.+.+||++|++.+...+
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~d~~g~~~~~~~~ 68 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-------------DRLVTMQIWDTAGQERFQSLG 68 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS-------------SCEEEEEEEEECSSGGGSCSC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeC-------------CceEEEEeeecCCcccccccc
Confidence 3799999999999999999999999999999999999988888776 678999999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..++..+|++|+|||+++..+|+.+..|+.++...... ....++|++|||||+|+.+. .+. .+++
T Consensus 69 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~ip~ilv~nK~Dl~~~---~~~----~~~~ 133 (184)
T d1vg8a_ 69 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP--------RDPENFPFVVLGNKIDLENR---QVA----TKRA 133 (184)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC--------SSGGGSCEEEEEECTTSSCC---CSC----HHHH
T ss_pred cccccCccEEEEeecccchhhhhcchhhHHHHHHHhcc--------ccccCCCEEEEEEeeccccc---chh----HHHH
Confidence 99999999999999999999999999999988765321 11236899999999999753 444 3777
Q ss_pred HHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 181 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 181 ~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
..++.+.+. ++|+| |||++|.||+++|+.+++.++++..
T Consensus 134 ~~~~~~~~~------~~~~e---------~Sak~~~gI~e~f~~l~~~i~~~~~ 172 (184)
T d1vg8a_ 134 QAWCYSKNN------IPYFE---------TSAKEAINVEQAFQTIARNALKQET 172 (184)
T ss_dssp HHHHHHTTS------CCEEE---------CBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC------CeEEE---------EcCCCCcCHHHHHHHHHHHHHhccc
Confidence 788777652 57888 9999999999999999999888654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.6e-30 Score=219.51 Aligned_cols=167 Identities=26% Similarity=0.424 Sum_probs=148.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
...+||+|+|++|||||||+++|+++.+...+.++.+.++..+.+.++ +..+.+.||||+|++++..
T Consensus 5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~Dt~G~~~~~~ 71 (177)
T d1x3sa1 5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD-------------GNKAKLAIWDTAGQERFRT 71 (177)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-------------TEEEEEEEEEECSSGGGCC
T ss_pred cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEe-------------ccccEEEEEECCCchhhHH
Confidence 456899999999999999999999999999999999988888888876 6789999999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
++..++.++|++|+|||++++.+|+.+..|+.++..... ....|+++++||.|+.. +.+.. +
T Consensus 72 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~~i~~~~nk~d~~~---~~v~~----~ 133 (177)
T d1x3sa1 72 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-----------RNDIVNMLVGNKIDKEN---REVDR----N 133 (177)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-----------CSCCEEEEEEECTTSSS---CCSCH----H
T ss_pred HHHHHHhcCCEEEEEEECCCccccccchhhhhhhccccc-----------ccceeeEEEeecccccc---ccccH----H
Confidence 999999999999999999999999999999999977643 24689999999999764 45663 7
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
++++++++++ ++|+| |||++|.|++++|+.+++.+++.
T Consensus 134 ~~~~~~~~~~-------~~~~e---------~Sa~tg~gv~e~f~~l~~~l~~~ 171 (177)
T d1x3sa1 134 EGLKFARKHS-------MLFIE---------ASAKTCDGVQCAFEELVEKIIQT 171 (177)
T ss_dssp HHHHHHHHTT-------CEEEE---------CCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCC-------CEEEE---------EeCCCCCCHHHHHHHHHHHHccC
Confidence 8899999988 46888 99999999999999998888764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.1e-30 Score=218.47 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=137.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+|+|+.|||||||+++|+++.|.. +.++.+..+ .+.+.++ +..+.+.||||+|++++.
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~-~~~i~v~-------------~~~~~l~i~Dt~g~~~~~-- 66 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVD-------------GQTHLVLIREEAGAPDAK-- 66 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEE-EEEEEET-------------TEEEEEEEEECSSCCCHH--
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeE-EEEeecC-------------ceEEEEEEeecccccccc--
Confidence 46999999999999999999999998854 445555544 5666665 688999999999988763
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
|++++|++|+|||++++.||+++..|+.++...... ...++|+++||||.|+.....+.++. ++
T Consensus 67 ---~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~---------~~~~~pi~lV~~k~d~d~~~~~~v~~----~~ 130 (175)
T d2bmja1 67 ---FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGE---------GRGGLALALVGTQDRISASSPRVVGD----AR 130 (175)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC-----------CCCCEEEEEEECTTCCSSSCCCSCH----HH
T ss_pred ---cccccceeEEEeecccchhhhhhHHHHHHHHHHhhc---------ccCCccEEEEeeecCcchhhhcchhH----HH
Confidence 688999999999999999999999999998765421 12478999999999997766677774 78
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
++.|+.... .++|+| |||++|.|++++|..+++.+++...
T Consensus 131 ~~~~~~~~~------~~~~~e---------~SAk~~~~v~~~F~~l~~~i~~~~~ 170 (175)
T d2bmja1 131 ARALCADMK------RCSYYE---------TCATYGLNVDRVFQEVAQKVVTLRK 170 (175)
T ss_dssp HHHHHHTST------TEEEEE---------EBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC------CCeEEE---------eCCCCCcCHHHHHHHHHHHHHHhhh
Confidence 888877654 257888 9999999999999999998887654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.95 E-value=4.1e-28 Score=203.17 Aligned_cols=160 Identities=20% Similarity=0.318 Sum_probs=128.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCR 100 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~ 100 (333)
++||+|+|++|||||||+++|+++.+...+.+|++.++. .+.. ..+.+.+||++|++.+...+
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~---------------~~~~~~i~D~~G~~~~~~~~ 64 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK---------------GNVTIKLWDIGGQPRFRSMW 64 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE---------------TTEEEEEEEECCSHHHHTTH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeee---------------eeEEEEEeeccccccccccc
Confidence 689999999999999999999999999888899887654 3433 35789999999999999999
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHH
Q 019959 101 SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 180 (333)
Q Consensus 101 ~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~ 180 (333)
..++..+|++++|||+++..+|+.+..|+..+..... ..++|++|||||.|+..... .
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~pi~lv~nK~Dl~~~~~-----------~ 122 (164)
T d1zd9a1 65 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-----------LQGIPVLVLGNKRDLPGALD-----------E 122 (164)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCCEEEEEECTTSTTCCC-----------H
T ss_pred cccccccchhhcccccccccccchhhhhhhhhhhhhc-----------ccCCcEEEEEeccccchhhh-----------H
Confidence 9999999999999999999999999999888876532 24799999999999975421 2
Q ss_pred HHHHHHcCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 181 RQWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 181 ~~~~~~~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+++.+..+..... ..++++| |||++|.|++++|+.|++.
T Consensus 123 ~~i~~~~~~~~~~~~~~~~~e---------~Sa~~g~gv~e~~~~l~~~ 162 (164)
T d1zd9a1 123 KELIEKMNLSAIQDREICCYS---------ISCKEKDNIDITLQWLIQH 162 (164)
T ss_dssp HHHHHHTTGGGCCSSCEEEEE---------CCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCEEEE---------EeCcCCcCHHHHHHHHHHc
Confidence 2233343321110 1256777 9999999999999887764
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.95 E-value=1.4e-27 Score=199.66 Aligned_cols=163 Identities=18% Similarity=0.281 Sum_probs=123.9
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|||++|||||||+++|.+..+ ..+.+|.+... ..+.. ..+.+.+||++|++.++..
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~--~~~~~---------------~~~~~~~~D~~G~~~~~~~ 62 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNI--KTLEH---------------RGFKLNIWDVGGQKSLRSY 62 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEE--EEEEE---------------TTEEEEEEEECCSHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeee--eeccc---------------cccceeeeecCcchhhhhH
Confidence 468999999999999999999998766 45667776543 33433 3588999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..++..++++++|||+++..++.....|+..+..... ..++|++||+||+|+.+. +.+ ++
T Consensus 63 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~-----------~~~~p~iiv~nK~Dl~~~--~~~------~~ 123 (165)
T d1ksha_ 63 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-----------LAGATLLIFANKQDLPGA--LSC------NA 123 (165)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTC--CCH------HH
T ss_pred HHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcc-----------cCCCceEEEEeccccccc--cCH------HH
Confidence 99999999999999999999999998777766654422 247899999999999754 221 22
Q ss_pred HHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.. ....+... ...++++| |||++|.|++++|+.|++.+..
T Consensus 124 ~~---~~~~~~~~~~~~~~~~~---------~Sa~~g~gv~e~~~~l~~~i~~ 164 (165)
T d1ksha_ 124 IQ---EALELDSIRSHHWRIQG---------CSAVTGEDLLPGIDWLLDDISS 164 (165)
T ss_dssp HH---HHTTGGGCCSSCEEEEE---------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred HH---HHHHhhhhhcCCCEEEE---------EECCCCCCHHHHHHHHHHHHHc
Confidence 22 22221110 01356777 9999999999999999988753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.95 E-value=8.5e-28 Score=202.98 Aligned_cols=164 Identities=19% Similarity=0.294 Sum_probs=125.6
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh
Q 019959 16 GPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER 95 (333)
Q Consensus 16 ~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~ 95 (333)
.++.+++||+|||++|||||||+++|+++.+. ...++.+.+ .+.+.+ ..+.+.+||++|++.
T Consensus 11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~--~~~i~~---------------~~~~~~i~d~~g~~~ 72 (176)
T d1fzqa_ 11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQS---------------QGFKLNVWDIGGQRK 72 (176)
T ss_dssp SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEE---------------TTEEEEEEECSSCGG
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeee--EEEecc---------------CCeeEeEeecccccc
Confidence 45667899999999999999999999988774 333444543 344443 357899999999999
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+...+..++..+|++|+|||+++..++..+..|+.++..... ..++|++|||||+|+.....
T Consensus 73 ~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-----------~~~~pillv~nK~Dl~~~~~------- 134 (176)
T d1fzqa_ 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-----------LSCVPVLIFANKQDLLTAAP------- 134 (176)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-----------GTTCCEEEEEECTTSTTCCC-------
T ss_pred chhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc-----------cCCCeEEEEEEecccccccc-------
Confidence 999999999999999999999999999999888887765532 23789999999999986521
Q ss_pred HHHHHHHHHHHcCCCCC-CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
...+.+..+.... ...++++| |||++|.|++++|++|++.
T Consensus 135 ----~~~~~~~~~~~~~~~~~~~~~~---------~SA~tg~gv~e~~~~l~~~ 175 (176)
T d1fzqa_ 135 ----ASEIAEGLNLHTIRDRVWQIQS---------CSALTGEGVQDGMNWVCKN 175 (176)
T ss_dssp ----HHHHHHHTTGGGCCSSCEEEEE---------CCTTTCTTHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHhcCCEEEE---------EeCCCCCCHHHHHHHHHhc
Confidence 1222333332110 11256777 9999999999999988764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.95 E-value=9e-28 Score=204.33 Aligned_cols=167 Identities=19% Similarity=0.326 Sum_probs=125.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
..+.+||+|+|++|||||||+++|+++.+. ...+|.+..+. .+.. ..+.+.+||++|++.+.
T Consensus 14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~--~~~~---------------~~~~~~i~D~~g~~~~~ 75 (182)
T d1moza_ 14 SNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVE--TLSY---------------KNLKLNVWDLGGQTSIR 75 (182)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEE--EEEE---------------TTEEEEEEEEC----CC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEE--EEee---------------CCEEEEEEecccccccc
Confidence 456799999999999999999999877663 34456565443 2222 35789999999999999
Q ss_pred hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHH
Q 019959 98 DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 177 (333)
Q Consensus 98 ~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~ 177 (333)
.++..++..+|++++|||+++..++..+..|+..+..... ..++|++|||||+|+.+.. +
T Consensus 76 ~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~-----------~~~~piliv~NK~Dl~~~~----~----- 135 (182)
T d1moza_ 76 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-----------LQDAALLVFANKQDQPGAL----S----- 135 (182)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-----------TSSCEEEEEEECTTSTTCC----C-----
T ss_pred hhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhc-----------cCCcceEEEEEeecccccc----C-----
Confidence 9999999999999999999999999999888877655432 2478999999999997541 1
Q ss_pred HHHHHHHHHcCCCCCCc-CCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHH
Q 019959 178 DAARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~ 233 (333)
.+++.+.+++..... .++|+| |||++|.|++++|+.|++.+.++.
T Consensus 136 --~~~i~~~~~~~~~~~~~~~~~e---------~SA~~g~gv~e~~~~l~~~i~~~~ 181 (182)
T d1moza_ 136 --ASEVSKELNLVELKDRSWSIVA---------SSAIKGEGITEGLDWLIDVIKEEQ 181 (182)
T ss_dssp --HHHHHHHTTTTTCCSSCEEEEE---------EBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhCCCEEEE---------EECCCCCCHHHHHHHHHHHHHHcC
Confidence 234444554332111 256777 999999999999999998887654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.94 E-value=4.1e-27 Score=198.69 Aligned_cols=161 Identities=20% Similarity=0.298 Sum_probs=123.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|+++.+.. ..+|.+..+. ... ...+.+.+||++|++.+...
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~~--~~~---------------~~~~~~~i~D~~g~~~~~~~ 72 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVT---------------YKNVKFNVWDVGGQDKIRPL 72 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEEE--EEE---------------ETTEEEEEEEESCCGGGHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeEE--Eee---------------ccceeeEEecCCCcchhhhH
Confidence 46899999999999999999999887643 4445554432 222 24578999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
+..++..+|++|+|||+++.+++..+..|+..+..... ..+.|++||+||+|+.+...
T Consensus 73 ~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~-----------~~~~piiiv~NK~Dl~~~~~----------- 130 (173)
T d1e0sa_ 73 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-----------MRDAIILIFANKQDLPDAMK----------- 130 (173)
T ss_dssp HGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG-----------GTTCEEEEEEECTTSTTCCC-----------
T ss_pred HHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcc-----------cccceeeeeeeccccccccc-----------
Confidence 99999999999999999999999999888887765422 24789999999999975421
Q ss_pred HHHHHHHcCCCCCCc-CCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~-~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
..+....+++....+ +++++| |||++|.||+++|+.|.+.+
T Consensus 131 ~~~i~~~~~~~~~~~~~~~~~e---------~SA~tg~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 131 PHEIQEKLGLTRIRDRNWYVQP---------SCATSGDGLYEGLTWLTSNY 172 (173)
T ss_dssp HHHHHHHTTGGGCCSSCEEEEE---------CBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCEEEE---------eeCCCCcCHHHHHHHHHHhc
Confidence 222334444322111 356777 99999999999999997653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.92 E-value=2.5e-25 Score=183.54 Aligned_cols=159 Identities=18% Similarity=0.260 Sum_probs=121.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRS 101 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~ 101 (333)
+||+|+|++|||||||+++|+++++...+..+... .... . ...+.+.+||++|.+.+.....
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~~~~--~-------------~~~~~~~~~d~~g~~~~~~~~~ 62 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETV--E-------------YKNISFTVWDVGGQDKIRPLWR 62 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC---EEEE--E-------------CSSCEEEEEECCCCGGGHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE---EEEE--e-------------eeeEEEEEecCCCcccchhhhh
Confidence 59999999999999999999988876555443222 1122 2 3567899999999999999999
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHH
Q 019959 102 ILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 181 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~ 181 (333)
.++..++++++|||++++.++..+..|+.++..... ...+|+++|+||.|+.+... .+
T Consensus 63 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~v~~k~d~~~~~~-----------~~ 120 (160)
T d1r8sa_ 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-----------LRDAVLLVFANKQDLPNAMN-----------AA 120 (160)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCCC-----------HH
T ss_pred hhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhc-----------ccCceEEEEeeccccccccc-----------HH
Confidence 999999999999999999999999889888876532 24789999999999986521 12
Q ss_pred HHHHHcCCCC-CCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 182 QWVEKQGLLP-SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 182 ~~~~~~~~~~-~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
++....+... ...+++|+| |||++|.|++++|+.|++.|
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~---------~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 121 EITDKLGLHSLRHRNWYIQA---------TCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp HHHHHTTGGGCSSCCEEEEE---------CBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhCCCEEEE---------eECCCCCCHHHHHHHHHhcC
Confidence 2222222111 111366777 99999999999999988753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=6.9e-24 Score=180.63 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=116.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+++||++||+.|||||||+++|..+.+... +. ....+. ...+.+.+||++|+++|..+
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~~--~~~~~~---------------~~~~~~~i~D~~Gq~~~~~~ 58 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHEAGT-----GI--VETHFT---------------FKDLHFKMFDVGGQRSERKK 58 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHSCCC-----SE--EEEEEE---------------ETTEEEEEEEECCSGGGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCc-----cE--EEEEEE---------------eeeeeeeeeccccccccccc
Confidence 468999999999999999999997766433 32 122333 24678999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcccHH-----------HHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKT-----------SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~-----------~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
+..+++.++++++|||+++..+|. .+..|...+.... ....|+++||||+|+.....
T Consensus 59 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~------------~~~~~~~lv~Nk~d~~~~~~ 126 (195)
T d1svsa1 59 WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW------------FTDTSIILFLNKKDLFEEKI 126 (195)
T ss_dssp GGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGG------------GTTSEEEEEEECHHHHHHHT
T ss_pred hhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccc------------cCCCCEEEEeccchhhhhhc
Confidence 999999999999999999988763 3344554443332 24789999999999743210
Q ss_pred ----------CccCcccHHHHHHHHHHHc-CCC--CCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 169 ----------TRGSSGNLVDAARQWVEKQ-GLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 169 ----------r~v~~~~~~~~~~~~~~~~-~~~--~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.........+.+..+...+ .+. .-...+.++| |||++|.||+++|+.+.+.++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~---------tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 127 KKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHF---------TCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp TTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEE---------CCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEE---------EEeECCHhHHHHHHHHHHHHHhc
Confidence 1111112223222233222 111 1111244566 99999999999999988877654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=4e-23 Score=176.51 Aligned_cols=175 Identities=14% Similarity=0.157 Sum_probs=125.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+++||+|+|+.|||||||+++|+.+.+ .+.+|+|.++.. +. ...+.+.+||++|++.+...
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~--~~---------------~~~~~~~~~d~~g~~~~~~~ 61 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP--FD---------------LQSVIFRMVDVGGQRSERRK 61 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE--EE---------------CSSCEEEEEECCCSTTGGGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEE--Ee---------------ccceeeeecccccccccccc
Confidence 468999999999999999999998887 467899977543 33 24577999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCcc-----------cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccC
Q 019959 100 RSILYSQINGVIFVHDLSQRR-----------TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 168 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~-----------S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~ 168 (333)
+..++..++++++|||+++.. .++.+..|...+..... .+.|+++|+||.|+.....
T Consensus 62 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~------------~~~~~~~v~NK~Dl~~~~~ 129 (200)
T d2bcjq2 62 WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF------------QNSSVILFLNKKDLLEEKI 129 (200)
T ss_dssp GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGG------------SSSEEEEEEECHHHHHHHT
T ss_pred ccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhc------------cCccEEEecchhhhhhhcc
Confidence 999999999999999998864 35667778887766532 4799999999999854311
Q ss_pred CccC----------cccHHHHHHHHHHH--cCCCCCC-cCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 169 TRGS----------SGNLVDAARQWVEK--QGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 169 r~v~----------~~~~~~~~~~~~~~--~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
.... .....+.+..+... .+..... ..+.++| |||++|.||+++|+.+.+.|+++.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~---------tSAk~~~ni~~vF~~i~~~I~~~nl 199 (200)
T d2bcjq2 130 MYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF---------TCATDTENIRFVFAAVKDTILQLNL 199 (200)
T ss_dssp TTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEE---------CCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEE---------eEEEcCHhHHHHHHHHHHHHHHHhc
Confidence 1000 00001223332221 1111110 1233556 9999999999999999888887643
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.88 E-value=8e-23 Score=171.75 Aligned_cols=163 Identities=19% Similarity=0.249 Sum_probs=115.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+++||+|+|.+|||||||+++|.++++... .++.+.. ..... ...+.+.+||++|.+.+..
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~--~~~~~---------------~~~~~~~~~d~~~~~~~~~ 74 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIV---------------INNTRFLMWDIGGQESLRS 74 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSS--CEEEE---------------ETTEEEEEEECCC----CG
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-cccccee--EEEEe---------------ecceEEEEecccccccccc
Confidence 3458999999999999999999999877532 2232322 22222 2357799999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
....++..++++++|+|.++..++.....+......... ....|++||+||+|+..... .+
T Consensus 75 ~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~-----------~~~~p~iiv~nK~Dl~~~~~--------~~ 135 (177)
T d1zj6a1 75 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-----------LRKAGLLIFANKQDVKECMT--------VA 135 (177)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-----------GTTCEEEEEEECTTSTTCCC--------HH
T ss_pred chhhhhccceeeeeecccccccchhhhhhhhhhhhhccc-----------ccceEEEEEEEcccccccCc--------HH
Confidence 999999999999999999999999988776666554432 24789999999999975421 12
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+..+......+. ..+++|+| |||++|.|++++++.|.++|
T Consensus 136 ~i~~~~~~~~~~--~~~~~~~~---------~Sa~tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 136 EISQFLKLTSIK--DHQWHIQA---------CCALTGEGLCQGLEWMMSRL 175 (177)
T ss_dssp HHHHHHTGGGCC--SSCEEEEE---------CBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH--hcCCEEEE---------EeCCCCCCHHHHHHHHHHHh
Confidence 222222111111 11367888 99999999999999998765
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=6.4e-22 Score=162.80 Aligned_cols=156 Identities=18% Similarity=0.232 Sum_probs=117.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSI 102 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~ 102 (333)
||+|||++|||||||+++|+++.+. ...+|.+.... ...+ ..+.+.+||+.|...+......
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 63 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE--ELAI---------------GNIKFTTFDLGGHIQARRLWKD 63 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE--EECC---------------TTCCEEEEECCCSGGGGGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE--Eecc---------------CCeeEEEEeeccchhhhhhHhh
Confidence 8999999999999999999998874 45666654432 2222 3456899999999999999999
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 103 LYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 103 ~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
++..++++++|+|.++..++.....|...+..... ..+.|+++++||.|+... +. ..+
T Consensus 64 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~i~~~k~d~~~~----~~-------~~~ 121 (166)
T d2qtvb1 64 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-----------LKDVPFVILGNKIDAPNA----VS-------EAE 121 (166)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTT-----------TTTCCEEEEEECTTSSSC----CC-------HHH
T ss_pred hhhheeeeeeeccccchhhhhhhhHHHHhhhhhhc-----------cCCceEEEEecccccccc----CC-------HHH
Confidence 99999999999999999999998888877766543 347899999999999754 11 122
Q ss_pred HHHHcCCCCC--------CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 183 WVEKQGLLPS--------SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 183 ~~~~~~~~~~--------~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+.+..++... ...++|+| |||++|.|++++|+.|.+
T Consensus 122 i~~~~~~~~~~~~~~~~~~~~~~~~~---------~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 122 LRSALGLLNTTGSQRIEGQRPVEVFM---------CSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp HHHHHTCSSCCC---CCSSCCEEEEE---------EBTTTTBSHHHHHHHHTT
T ss_pred HHHHhhhhhhhHHHhhcccCCCEEEE---------eeCCCCCCHHHHHHHHhC
Confidence 2233322111 01234555 999999999999998753
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.88 E-value=8.6e-22 Score=163.11 Aligned_cols=164 Identities=23% Similarity=0.306 Sum_probs=120.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+++||+|||++|||||||+++|+++.+.. ..++.+... ..... ..+.+.+||.+|.+.+..
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~~~~~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~ 64 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV--ETVTY---------------KNLKFQVWDLGGLTSIRP 64 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEEE---------------TTEEEEEEEECCCGGGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcc-eecccceee--eeecc---------------CceEEEEeeccccccccc
Confidence 356899999999999999999999998864 334444332 22222 357899999999999999
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
.....+..++++++++|+++..++.....+......... ....|+++|+||.|+..... . .+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~iv~nk~Dl~~~~~---~----~~ 126 (169)
T d1upta_ 65 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-----------LRKAILVVFANKQDMEQAMT---S----SE 126 (169)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-----------GTTCEEEEEEECTTSTTCCC---H----HH
T ss_pred cchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhc-----------cccceEEEEEeecccccccc---H----HH
Confidence 998999999999999999999999888776655544422 13689999999999986521 1 01
Q ss_pred HHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
....++...- ...+++|+| |||++|.||+++|+.|++.+.
T Consensus 127 i~~~~~~~~~---~~~~~~~~~---------~SA~~g~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 127 MANSLGLPAL---KDRKWQIFK---------TSATKGTGLDEAMEWLVETLK 166 (169)
T ss_dssp HHHHHTGGGC---TTSCEEEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hcCCCEEEE---------EeCCCCCCHHHHHHHHHHHHH
Confidence 1122211111 112367888 999999999999999988664
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=8.2e-22 Score=166.50 Aligned_cols=153 Identities=20% Similarity=0.171 Sum_probs=101.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER----- 95 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~----- 95 (333)
-+|+|+|.+|||||||+|+|++..... ...+....+........ ....+.+|||+|...
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~---------------~~~~~~~~DtpG~~~~~~~~ 70 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE---------------GRRQIVFVDTPGLHKPMDAL 70 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE---------------TTEEEEEEECCCCCCCCSHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeee---------------eeeeeeeccccccccccccc
Confidence 379999999999999999999875421 22222222222223332 246799999999533
Q ss_pred ---hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 96 ---YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 96 ---~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
+......++..||++|+|+|+++..+... ..|...+.... .+.|+++|+||+|+....
T Consensus 71 ~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~-------------~~~piilv~NK~Dl~~~~----- 131 (178)
T d1wf3a1 71 GEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-------------GKVPILLVGNKLDAAKYP----- 131 (178)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-------------TTSCEEEEEECGGGCSSH-----
T ss_pred chhcccccccccccccceeeeechhhhhcccc-cchhhheeccc-------------cchhhhhhhcccccccCH-----
Confidence 23333445789999999999998766543 44555555543 368999999999997542
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.+..+.+.+.++. ..+++ +||++|.|++++++.+.+
T Consensus 132 ----~~~~~~~~~~~~~------~~~~~---------iSA~~~~gi~~L~~~i~~ 167 (178)
T d1wf3a1 132 ----EEAMKAYHELLPE------AEPRM---------LSALDERQVAELKADLLA 167 (178)
T ss_dssp ----HHHHHHHHHTSTT------SEEEE---------CCTTCHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHhhccc------CceEE---------EecCCCCCHHHHHHHHHH
Confidence 1334445444443 23555 999999777776666653
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=3.4e-22 Score=171.13 Aligned_cols=174 Identities=11% Similarity=0.132 Sum_probs=113.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
+.+||+|+|++|||||||+++|. +...+.+|+|..+. .+.+ ..+.+.+||++|++.+...
T Consensus 1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~~~~---------------~~~~~~~~D~~gq~~~~~~ 60 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--DFEI---------------KNVPFKMVDVGGQRSERKR 60 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--EEEE---------------TTEEEEEEEECC-------
T ss_pred CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--EEee---------------eeeeeeeecccceeeeccc
Confidence 35899999999999999999994 55667889996543 3443 3678999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCccc----------HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 100 RSILYSQINGVIFVHDLSQRRT----------KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S----------~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
+..+++.++++++|||.++..+ ++....|+..+..... ..++|++|||||+|+......
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~piilv~NK~Dl~~~~~~ 129 (200)
T d1zcba2 61 WFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV-----------FSNVSIILFLNKTDLLEEKVQ 129 (200)
T ss_dssp CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG-----------GTTSEEEEEEECHHHHHHHTT
T ss_pred ccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChh-----------hcCceEEEEeccchhhhhhcc
Confidence 9999999999999999998654 3444455555544422 248999999999998542110
Q ss_pred -----------ccCcccHHHHHHHHHHH-cC-CCCC--CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHHHh
Q 019959 170 -----------RGSSGNLVDAARQWVEK-QG-LLPS--SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 234 (333)
Q Consensus 170 -----------~v~~~~~~~~~~~~~~~-~~-~~~~--~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~~~ 234 (333)
...... .+.+.++... +. .... ...+-+++ |||+++.||+++|+.+.+.++++.+
T Consensus 130 ~~~~~~~f~~~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~iy~~~---------TsA~d~~ni~~vf~~v~d~i~~~~l 199 (200)
T d1zcba2 130 VVSIKDYFLEFEGDPHC-LRDVQKFLVECFRGKRRDQQQRPLYHHF---------TTAINTENIRLVFRDVKDTILHDNL 199 (200)
T ss_dssp TCCGGGTCTTCCSCTTC-HHHHHHHHHHHHHTTCSSCC--CCEEEE---------CCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhCccccCCcch-HHHHHHHHHHHHHHhccCCCCCceEEEE---------eeeeCcHHHHHHHHHHHHHHHHHhc
Confidence 001111 2333333332 11 1100 00122334 9999999999999999888877643
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=7.8e-22 Score=163.36 Aligned_cols=150 Identities=19% Similarity=0.186 Sum_probs=107.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh----
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY---- 96 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~---- 96 (333)
+||+|+|.+|||||||+|+|++.... ....++...+.....+.. ....+.+||++|..+.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~d~~g~~~~~~~~ 66 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI---------------DGMPLHIIDTAGLREASDEV 66 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE---------------TTEEEEEEECCCCSCCSSHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeec---------------cCceeeeccccccccccccc
Confidence 79999999999999999999977543 223333233333333433 2467889999994322
Q ss_pred ----hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 97 ----KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 97 ----~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
......++..+|++++++|.++..+++....|...+.... .+.|++||+||+|+..+.. ...
T Consensus 67 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~iilv~NK~Dl~~~~~-~~~ 132 (161)
T d2gj8a1 67 ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP-------------AKLPITVVRNKADITGETL-GMS 132 (161)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-------------TTCCEEEEEECHHHHCCCC-EEE
T ss_pred hhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcc-------------cccceeeccchhhhhhhHH-HHH
Confidence 1223345789999999999999998888877777776653 3689999999999976521 100
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+.+ .+++++ +||++|.|++++++.|.+.
T Consensus 133 -------------~~~------~~~~~~---------iSAk~~~gi~~L~~~l~~~ 160 (161)
T d2gj8a1 133 -------------EVN------GHALIR---------LSARTGEGVDVLRNHLKQS 160 (161)
T ss_dssp -------------EET------TEEEEE---------CCTTTCTTHHHHHHHHHHH
T ss_pred -------------HhC------CCcEEE---------EECCCCCCHHHHHHHHHhh
Confidence 111 256777 9999999999999988775
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=8.1e-21 Score=160.48 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=98.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER------- 95 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~------- 95 (333)
.|+|+|.+|||||||+|+|++...........+.......... .....+.+|||+|...
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~--------------~~~~~~~~~DtpG~~~~~~~~~~ 68 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV--------------SEEERFTLADIPGIIEGASEGKG 68 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC--------------SSSCEEEEEECCCCCCCGGGSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeee--------------cCCCeEEEcCCCeeecCchHHHH
Confidence 4999999999999999999976543322222222222323322 2345689999999322
Q ss_pred hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCccc
Q 019959 96 YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 175 (333)
Q Consensus 96 ~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~ 175 (333)
+.......+..++++++++|+.... +..+..|...+..... ...+.|+++|+||+|+...
T Consensus 69 ~~~~~l~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~----------~~~~~p~iiv~NK~D~~~~--------- 128 (180)
T d1udxa2 69 LGLEFLRHIARTRVLLYVLDAADEP-LKTLETLRKEVGAYDP----------ALLRRPSLVALNKVDLLEE--------- 128 (180)
T ss_dssp SCHHHHHHHTSSSEEEEEEETTSCH-HHHHHHHHHHHHHHCH----------HHHHSCEEEEEECCTTSCH---------
T ss_pred HHHHHHHHHHhhhhhhhhccccccc-ccchhhhhhhhhcccc----------ccchhhhhhhhhhhhhhhH---------
Confidence 1112223467899999999987642 3344333333322210 0125799999999999865
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 176 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+..+.+.+.+... ..++++ +||++|.|++++++.+.+.+
T Consensus 129 --~~~~~~~~~~~~~----~~~~~~---------iSA~tg~gid~L~~~i~~~l 167 (180)
T d1udxa2 129 --EAVKALADALARE----GLAVLP---------VSALTGAGLPALKEALHALV 167 (180)
T ss_dssp --HHHHHHHHHHHTT----TSCEEE---------CCTTTCTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhc----CCeEEE---------EEcCCCCCHHHHHHHHHHHH
Confidence 2223333322211 256777 99999999999888876654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.83 E-value=3.8e-20 Score=155.41 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=110.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.+..||+|||++|||||||+++|+++.+... .++.+.+. ..+.++ ...+.+||+.++..+..
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~--~~~~~~---------------~~~~~~~~~~~~~~~~~ 72 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTS--EELTIA---------------GMTFTTFDLGGHIQARR 72 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEET---------------TEEEEEEEECC----CC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccce--eEEEec---------------ccccccccccchhhhhh
Confidence 4568999999999999999999998877543 34444433 233332 35688999999999988
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHH
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 178 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~ 178 (333)
....++...+++++|+|+++...+.....+......... ..++|+++++||.|+... +. ..
T Consensus 73 ~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~-----------~~~~~~li~~~K~D~~~~----~~----~~ 133 (186)
T d1f6ba_ 73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET-----------IANVPILILGNKIDRPEA----IS----EE 133 (186)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-----------GTTSCEEEEEECTTSTTC----CC----HH
T ss_pred HHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccc-----------cCCCceEEEEeccCcccc----CC----HH
Confidence 888999999999999999999999887665555544321 247999999999998753 12 13
Q ss_pred HHHHHHHHcCCCCCCc----------CCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 179 AARQWVEKQGLLPSSE----------ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~~----------~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
+..+............ .++++| |||++|.|++|+|+.|.+.
T Consensus 134 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~SA~tg~Gi~e~~~~l~~~ 184 (186)
T d1f6ba_ 134 RLREMFGLYGQTTGKGSVSLKELNARPLEVFM---------CSVLKRQGYGEGFRWMAQY 184 (186)
T ss_dssp HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE---------CBTTTTBSHHHHHHHHHTT
T ss_pred HHHHHHhhcccchhhhhhhHHHhhcCCCEEEE---------EeCCCCCCHHHHHHHHHHh
Confidence 3333322221111000 123555 9999999999999988764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=4.6e-20 Score=152.33 Aligned_cols=149 Identities=21% Similarity=0.250 Sum_probs=100.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-------
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH------- 93 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~------- 93 (333)
+||+|+|.+|||||||+|+|++.... ....+..........+.. ....+.+|||+|.
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Dt~G~~~~~~~~ 65 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI---------------RGILFRIVDTAGVRSETNDL 65 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE---------------TTEEEEEEESSCCCSSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEe---------------CCeeEEeccccccccCCccH
Confidence 69999999999999999999976532 222222222222333333 2467899999993
Q ss_pred -hhh-hhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 94 -ERY-KDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 94 -e~~-~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
+.+ .......+..+|++|+|+|+++....+....+.. + ...++++++||+|+.+...
T Consensus 66 ~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~-~-----------------~~~~~i~~~~k~d~~~~~~--- 124 (160)
T d1xzpa2 66 VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILER-I-----------------KNKRYLVVINKVDVVEKIN--- 124 (160)
T ss_dssp CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHH-H-----------------TTSSEEEEEEECSSCCCCC---
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhh-c-----------------ccccceeeeeeccccchhh---
Confidence 111 1112224678999999999999887665543322 1 1568999999999987521
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
..++...++. +.++++ +||++|.|++++++.++++
T Consensus 125 --------~~~~~~~~~~-----~~~~~~---------vSA~~g~gi~~L~~~I~ke 159 (160)
T d1xzpa2 125 --------EEEIKNKLGT-----DRHMVK---------ISALKGEGLEKLEESIYRE 159 (160)
T ss_dssp --------HHHHHHHHTC-----STTEEE---------EEGGGTCCHHHHHHHHHHH
T ss_pred --------hHHHHHHhCC-----CCcEEE---------EECCCCCCHHHHHHHHHhc
Confidence 2334444443 256777 9999999999999888764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.81 E-value=6.4e-20 Score=155.19 Aligned_cols=166 Identities=16% Similarity=0.182 Sum_probs=105.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcc-----cceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQT-----IGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
.+.++|+|||.+|||||||+|+|++.........+ .|.++......+ ......+.++|++|+
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------------~~~~~~~~~~d~~g~ 69 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAF-------------KLENYRITLVDAPGH 69 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEE-------------EETTEEEEECCCSSH
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccc-------------ccCCccccccccccc
Confidence 35689999999999999999999964322111111 011111111111 123467899999999
Q ss_pred hhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 94 ERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 94 e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
.+|.......+..+|++++|+|+++....+....| ..+... ++|+++|.||+|+...+.....
T Consensus 70 ~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~~---------------~~p~iiv~NKiD~~~~~~~~~~- 132 (179)
T d1wb1a4 70 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDHF---------------NIPIIVVITKSDNAGTEEIKRT- 132 (179)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHHT---------------TCCBCEEEECTTSSCHHHHHHH-
T ss_pred cccccchhhhhhhccccccccccccccchhhhhhh-hhhhhc---------------CCcceeccccccccCHHHHHHH-
Confidence 99998888889999999999999987655443333 333333 6899999999999865211000
Q ss_pred ccHHHHHHHHHHHc-CCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQ-GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 174 ~~~~~~~~~~~~~~-~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
.+..+.+.+.. ++ ...|+++ +||++|.|++++++.+.+.+-
T Consensus 133 ---~~~~~~~~~~~~~~----~~~~iv~---------iSA~~g~gi~eL~~~I~~~l~ 174 (179)
T d1wb1a4 133 ---EMIMKSILQSTHNL----KNSSIIP---------ISAKTGFGVDELKNLIITTLN 174 (179)
T ss_dssp ---HHHHHHHHHHSSSG----GGCCEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhhcC----CCCeEEE---------EEccCCcCHHHHHHHHHhcCC
Confidence 12222222221 21 1246666 999999999999888877653
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.81 E-value=1.8e-19 Score=151.95 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=97.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch--------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE-------- 94 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e-------- 94 (333)
.|+|||.+|||||||+|+|++........+..+.+ ...+... .+.||||||..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~-----------------~~~ivDtpG~~~~~~~~~~ 62 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK-----------------NHKIIDMPGFGFMMGLPKE 62 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET-----------------TEEEEECCCBSCCTTSCHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--ccccccc-----------------cceecccCCceeccccccc
Confidence 69999999999999999999877654433322222 2333332 16789999931
Q ss_pred ---h----hhhhHHhhccCCcEEEEEEECCCcccHHHH----------HHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEE
Q 019959 95 ---R----YKDCRSILYSQINGVIFVHDLSQRRTKTSL----------QKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 157 (333)
Q Consensus 95 ---~----~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l----------~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivV 157 (333)
. +.......++.+|++++|+|++........ ...+..+... ++|+++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~---------------~~p~iiv 127 (184)
T d2cxxa1 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL---------------DIPTIVA 127 (184)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT---------------TCCEEEE
T ss_pred cccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc---------------CCCEEEE
Confidence 1 112233346789999999999764322111 1123333333 6899999
Q ss_pred eeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHH
Q 019959 158 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 230 (333)
Q Consensus 158 gNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~ 230 (333)
+||+|+.... .+....+...++........++++ +||++|.|++++++.+++.+-
T Consensus 128 ~NK~D~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---------vSA~~g~gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 128 VNKLDKIKNV---------QEVINFLAEKFEVPLSEIDKVFIP---------ISAKFGDNIERLKNRIFEVIR 182 (184)
T ss_dssp EECGGGCSCH---------HHHHHHHHHHHTCCGGGHHHHEEE---------CCTTTCTTHHHHHHHHHHHHH
T ss_pred EeeeehhhhH---------HHHHHHHHHHhcccccccCCeEEE---------EECCCCCCHHHHHHHHHHHcc
Confidence 9999987542 133333444444321111123455 999999999999999987664
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=7.3e-19 Score=147.01 Aligned_cols=155 Identities=19% Similarity=0.173 Sum_probs=97.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCch-------
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSF-SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHE------- 94 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e------- 94 (333)
+|+|+|.+|||||||+++|++.... ....+..........+. .....+.+||++|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~---------------~~~~~~~~~d~~g~~~~~~~~~ 66 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVE---------------WYGKTFKLVDTCGVFDNPQDII 66 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEE---------------ETTEEEEEEECTTTTSSGGGCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccccc---------------ccccccccccccceeeeecccc
Confidence 6999999999999999999976542 11111111111122222 245678999999931
Q ss_pred --hhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccC
Q 019959 95 --RYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 172 (333)
Q Consensus 95 --~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~ 172 (333)
.+......++..+|+++++.|.++...... ..|+..+... ++|+|+|+||+|+..+..
T Consensus 67 ~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---------------~~pviiv~NK~Dl~~~~~---- 126 (171)
T d1mkya1 67 SQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS---------------TVDTILVANKAENLREFE---- 126 (171)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH---------------TCCEEEEEESCCSHHHHH----
T ss_pred ccccccccccccccCcEEEEeecccccccccc-cccccccccc---------------cccccccchhhhhhhhhh----
Confidence 122233345679999999999987766544 4566666655 579999999999974310
Q ss_pred cccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHHH
Q 019959 173 SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 232 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~~ 232 (333)
.+......+.+. .++++ +||++|.|++++++.+.+.+-++
T Consensus 127 -----~~~~~~~~~~~~------~~~i~---------iSAk~g~gid~L~~~i~~~l~e~ 166 (171)
T d1mkya1 127 -----REVKPELYSLGF------GEPIP---------VSAEHNINLDTMLETIIKKLEEK 166 (171)
T ss_dssp -----HHTHHHHGGGSS------CSCEE---------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred -----hHHHHHHHhcCC------CCeEE---------EecCCCCCHHHHHHHHHHhCCCC
Confidence 111111112332 23455 99999999999999998876544
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.78 E-value=1.9e-19 Score=152.43 Aligned_cols=160 Identities=14% Similarity=0.097 Sum_probs=99.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhh----hh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERY----KD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~----~~ 98 (333)
+|+|+|.+|||||||+|+|++........+..+.+.......+. ....+.+|||||..+. ..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~--------------~~~~~~~~DtpG~~~~~~~~~~ 68 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD--------------DGRSFVMADLPGLIEGAHQGVG 68 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS--------------SSCEEEEEEHHHHHHHTTCTTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEec--------------CCcEEEEecCCCcccCchHHHH
Confidence 69999999999999999999765432222222222333333332 2235789999995221 11
Q ss_pred hHH---hhccCCcEEEEEEECCCcccHHHHH--HHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCc
Q 019959 99 CRS---ILYSQINGVIFVHDLSQRRTKTSLQ--KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 173 (333)
Q Consensus 99 ~~~---~~~~~ad~vIlV~D~s~~~S~~~l~--~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~ 173 (333)
+.. ..+..++.++++++....+...... .+......... ....++|+++|+||+|+.+.
T Consensus 69 ~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~kp~ivv~NK~Dl~~~------- 132 (185)
T d1lnza2 69 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN---------LRLTERPQIIVANKMDMPEA------- 132 (185)
T ss_dssp THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC---------SSTTTSCBCBEEECTTSTTH-------
T ss_pred HHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhh---------hhccCCcchhhccccchHhH-------
Confidence 111 2245789999999887665433222 22222212111 11236899999999999865
Q ss_pred ccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
.+..+.+.+.++- +.|++. +||++|.|++++++.+.+.+
T Consensus 133 ---~~~~~~~~~~~~~-----~~~v~~---------iSA~~g~Gi~~L~~~i~~~L 171 (185)
T d1lnza2 133 ---AENLEAFKEKLTD-----DYPVFP---------ISAVTREGLRELLFEVANQL 171 (185)
T ss_dssp ---HHHHHHHHHHCCS-----CCCBCC---------CSSCCSSTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcc-----CCcEEE---------EECCCCCCHHHHHHHHHHhh
Confidence 1445556555542 357777 99999999999988887654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.78 E-value=3.6e-19 Score=155.71 Aligned_cols=174 Identities=13% Similarity=0.124 Sum_probs=116.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
..+||+++|+.|||||||+++|..+.+ .+|+|... ..+.++ .+.+.+||++|++.++..
T Consensus 5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~---------------~~~~~~~D~~Gq~~~r~~ 63 (221)
T d1azta2 5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVD---------------KVNFHMFDVGGQRDERRK 63 (221)
T ss_dssp HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEET---------------TEEEEEEECCCSTTTTTG
T ss_pred hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEEC---------------cEEEEEEecCccceeccc
Confidence 357999999999999999999986654 47888554 445443 578999999999999999
Q ss_pred HHhhccCCcEEEEEEECCCccc----------HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCC
Q 019959 100 RSILYSQINGVIFVHDLSQRRT----------KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 169 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S----------~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r 169 (333)
+..++..++++++|+|+++... +.+...++..+..... ..++|++|+|||+|+.++...
T Consensus 64 w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~-----------~~~~~iil~~NK~Dl~~~k~~ 132 (221)
T d1azta2 64 WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW-----------LRTISVILFLNKQDLLAEKVL 132 (221)
T ss_dssp GGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGG-----------GSSCEEEEEEECHHHHHHHHH
T ss_pred hhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChh-----------hCCCcEEEEechhhhhhhhhc
Confidence 9999999999999999987532 2333333444433322 247999999999998653100
Q ss_pred --cc----------------------CcccHHHHHHHHHH-H----cCCCCCC-cCCCccccCCCCCceeeeeccCcCHH
Q 019959 170 --RG----------------------SSGNLVDAARQWVE-K----QGLLPSS-EELPLTESFPGGGGLIAAAKEARYDK 219 (333)
Q Consensus 170 --~v----------------------~~~~~~~~~~~~~~-~----~~~~~~~-~~~p~~E~~~~~~~~~~SAk~g~~v~ 219 (333)
.+ ........+..+.. + .....-. ..+-..+ |||+++.|+.
T Consensus 133 ~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~---------T~A~Dt~ni~ 203 (221)
T d1azta2 133 AGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF---------TCAVDTENIR 203 (221)
T ss_dssp HCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEE---------CCTTCHHHHH
T ss_pred cCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeee---------cceeccHHHH
Confidence 00 00011233333321 1 1111000 0111223 9999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 019959 220 EAVMKFFRMLIRRRY 234 (333)
Q Consensus 220 ~~~~~l~~~l~~~~~ 234 (333)
.+|+.+.+.|+++.+
T Consensus 204 ~vf~~v~d~I~~~~l 218 (221)
T d1azta2 204 RVFNDCRDIIQRMHL 218 (221)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888887654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=1.5e-18 Score=146.75 Aligned_cols=160 Identities=21% Similarity=0.140 Sum_probs=98.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh-
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSF--SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER- 95 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~- 95 (333)
...+||+|+|.+|||||||+|+|++.... .....+ ........+.++ ...+.++|++|...
T Consensus 6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t-~~~~~~~~~~~~---------------~~~~~~~d~~g~~~~ 69 (186)
T d1mkya2 6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGT-TRDPVDDEVFID---------------GRKYVFVDTAGLRRK 69 (186)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEET---------------TEEEEESSCSCC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCcceeeccccc-ccccceeeeccC---------------CceeeeeccCCcccc
Confidence 34589999999999999999999976531 122111 111222223332 34577888888432
Q ss_pred -----------hhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 96 -----------YKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 96 -----------~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
........+..+|++++|+|++.....+. ..++..+... +.|+|+|+||+|+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~~---------------~~~~i~v~nK~D~~ 133 (186)
T d1mkya2 70 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMERR---------------GRASVVVFNKWDLV 133 (186)
T ss_dssp --------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHT---------------TCEEEEEEECGGGS
T ss_pred ccccccccccchhHHHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHHc---------------CCceeeeccchhhh
Confidence 22233344678999999999987655332 3455555444 57999999999987
Q ss_pred CccCCccCcccHHHHHHHHHH-HcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVE-KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~-~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
...... .++..+..+ .... ....|+++ +||++|.|++++++.+-+.
T Consensus 134 ~~~~~~------~~~~~~~~~~~~~~---~~~~~i~~---------vSa~~g~gv~~L~~~i~~~ 180 (186)
T d1mkya2 134 VHREKR------YDEFTKLFREKLYF---IDYSPLIF---------TSADKGWNIDRMIDAMNLA 180 (186)
T ss_dssp TTGGGC------HHHHHHHHHHHCGG---GTTSCEEE---------CBTTTTBSHHHHHHHHHHH
T ss_pred cchhhh------hhhHHHHHHHHhcc---cCCCeEEE---------EeCCCCCCHHHHHHHHHHH
Confidence 553211 133333333 2221 11245666 9999999999988888543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.78 E-value=2.1e-18 Score=148.62 Aligned_cols=120 Identities=21% Similarity=0.258 Sum_probs=87.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh-hhHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK-DCRS 101 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~-~~~~ 101 (333)
+|+|+|++|||||||+++|+++.+... .+|++.++... .+. ++..+.+.+||++|++.+. ..+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~--~~~------------~~~~~~~~~~d~~g~~~~~~~~~~ 66 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIY--KVN------------NNRGNSLTLIDLPGHESLRFQLLD 66 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEE--ECS------------STTCCEEEEEECCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEE--EEe------------eeeeeeeeeeeccccccccchhhh
Confidence 699999999999999999999887554 45666655433 332 1456789999999999886 4567
Q ss_pred hhccCCcEEEEEEECCCcccH-HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 102 ILYSQINGVIFVHDLSQRRTK-TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
.++..++++++|||+++..++ .....|+..+...... ...++|++||+||+|+...
T Consensus 67 ~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~---------~~~~~pilvv~NK~Dl~~a 123 (207)
T d2fh5b1 67 RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA---------LKNSPSLLIACNKQDIAMA 123 (207)
T ss_dssp HHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT---------STTCCEEEEEEECTTSTTC
T ss_pred hhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHH---------hhcCCcEEEEEECcccCCC
Confidence 788999999999999998764 4444444443221100 0136899999999999864
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.76 E-value=9.7e-18 Score=143.02 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=95.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc------
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH------ 93 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~------ 93 (333)
...+|+|+|.+|||||||+|+|++...........+.+......... ..+.+.|++|.
T Consensus 22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~d~~~~~~~~~~ 85 (195)
T d1svia_ 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN----------------DELHFVDVPGYGFAKVS 85 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET----------------TTEEEEECCCBCCCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc----------------ccceEEEEEeecccccc
Confidence 33489999999999999999999865432222222222222222221 12455666662
Q ss_pred ----hhhh---hhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 94 ----ERYK---DCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 94 ----e~~~---~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
+... ......+..+|++++|+|+++...-.. ..++..+... ++|+++|+||+|+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~~---------------~~piivv~NK~D~~~~ 149 (195)
T d1svia_ 86 KSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYY---------------GIPVIVIATKADKIPK 149 (195)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT---------------TCCEEEEEECGGGSCG
T ss_pred ccccchhhhHHhhhhccccchhhhhhhhhccccccccc-cccccccccc---------------cCcceechhhccccCH
Confidence 1111 122233557899999999987654322 3455555554 5899999999998754
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
. .. .+..+.+.+.++... ..+++. +||++|.|++++++.+.+.+
T Consensus 150 ~--~~-----~~~~~~~~~~l~~~~---~~~~~~---------~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 150 G--KW-----DKHAKVVRQTLNIDP---EDELIL---------FSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp G--GH-----HHHHHHHHHHHTCCT---TSEEEE---------CCTTTCTTHHHHHHHHHHHH
T ss_pred H--HH-----HHHHHHHHHHhcccC---CCCEEE---------EeCCCCCCHHHHHHHHHHHh
Confidence 2 11 244455555555332 245666 99999999999999987764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.75 E-value=8e-18 Score=144.03 Aligned_cols=179 Identities=18% Similarity=0.160 Sum_probs=108.6
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCC---C--CcccceeEEEEEEEeCCCC-----CCCCccCC-CCCceEEEE
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSR---P--SQTIGCTVGVKHITYGSSG-----SSSNSIKG-DSERDFFVE 86 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~---~--~~t~~~~~~~~~~~~~~~~-----~~~~~i~~-~~~~~~~l~ 86 (333)
....++|+|+|..++|||||+++|++...... . ..|....+........... .+.....+ .......+.
T Consensus 2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T d1kk1a3 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 81 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence 34678999999999999999999986422111 1 1111122222222111000 00000011 223356799
Q ss_pred EEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 87 LWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 87 i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
++||||+++|.......+..+|++++|+|+.+..........+..+...+ ..++|+|.||+|+.+.
T Consensus 82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--------------~~~iiv~inK~D~~d~ 147 (195)
T d1kk1a3 82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--------------QKNIIIAQNKIELVDK 147 (195)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--------------CCCEEEEEECGGGSCH
T ss_pred eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--------------Cccceeeeecccchhh
Confidence 99999999999888888899999999999998653333333444444442 2358889999999865
Q ss_pred cCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 167 EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 167 ~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
.... +..+...++....+ .+++|+++ +||++|.|++++++.+.+
T Consensus 148 ~~~~----~~~~~~~~~~~~~~----~~~~~iIp---------iSA~~G~ni~~Ll~~I~~ 191 (195)
T d1kk1a3 148 EKAL----ENYRQIKEFIEGTV----AENAPIIP---------ISALHGANIDVLVKAIED 191 (195)
T ss_dssp HHHH----HHHHHHHHHHTTST----TTTCCEEE---------CBTTTTBSHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHhcccc----CCCCeEEE---------EECCCCCCHHHHHHHHHH
Confidence 2110 00122233332222 22467777 999999999998887765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.71 E-value=1.8e-17 Score=145.25 Aligned_cols=128 Identities=22% Similarity=0.182 Sum_probs=79.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCC----CCCCCCccCCCCCceEEEEEEeCCCchhhhh
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGS----SGSSSNSIKGDSERDFFVELWDISGHERYKD 98 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~ 98 (333)
.|+|+|.+++|||||+++|++..........+............. .+.+... .........+.++||||++.|..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iDtPGh~~f~~ 85 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK-FSIRETLPGLFFIDTPGHEAFTT 85 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGG-CGGGGTCCEEEEECCCTTSCCTT
T ss_pred EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccc-eeecccccccccccccceecccc
Confidence 499999999999999999986432111111111100111111100 0000000 00113455789999999999988
Q ss_pred hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 99 CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 99 ~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
.....+..+|++|+|+|+.+.-.-+.. ..+..+... ++|+|+|+||+|+....
T Consensus 86 ~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~---------------~~p~iivlNK~D~~~~~ 138 (227)
T d1g7sa4 86 LRKRGGALADLAILIVDINEGFKPQTQ-EALNILRMY---------------RTPFVVAANKIDRIHGW 138 (227)
T ss_dssp SBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHHT---------------TCCEEEEEECGGGSTTC
T ss_pred cchhcccccceEEEEEecccCcccchh-HHHHHhhcC---------------CCeEEEEEECccCCCch
Confidence 877788999999999999886654443 333444444 68999999999998653
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.70 E-value=3.4e-16 Score=134.86 Aligned_cols=178 Identities=20% Similarity=0.155 Sum_probs=104.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC---CC--CcccceeEEEEEEEeCCCCCCCC---------ccCC--CCCce
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS---RP--SQTIGCTVGVKHITYGSSGSSSN---------SIKG--DSERD 82 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~---~~--~~t~~~~~~~~~~~~~~~~~~~~---------~i~~--~~~~~ 82 (333)
.++++|+|+|..++|||||+++|++..... .. ..+.........+.......... .... .....
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 346899999999999999999998632110 00 00111111112221111100000 0000 11223
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
..+.+.|+||+..|.......+..+|++|+|+|+.+.-.-...+..+..+...+ -.|+||+.||+|
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--------------i~~iIV~vNK~D 151 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--------------VKNLIIVQNKVD 151 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--------------CCCEEEEEECGG
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--------------CceeeeccccCC
Confidence 468999999999998887777889999999999988632222222333333332 248899999999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
+.+.... ........+.+.. .+..++|++. +||++|.|++++++.+..
T Consensus 152 l~~~~~~-------~~~~~~~~~~l~~-~~~~~~p~ip---------iSA~~g~nI~~L~e~i~~ 199 (205)
T d2qn6a3 152 VVSKEEA-------LSQYRQIKQFTKG-TWAENVPIIP---------VSALHKINIDSLIEGIEE 199 (205)
T ss_dssp GSCHHHH-------HHHHHHHHHHHTT-STTTTCCEEE---------CBTTTTBSHHHHHHHHHH
T ss_pred CccchHH-------HHHHHHHHHHhcc-ccCCCCeEEE---------EeCCCCCChHHHHHHHHh
Confidence 9865211 1222222222221 2233577777 999999999988887765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.70 E-value=5.6e-17 Score=139.02 Aligned_cols=154 Identities=22% Similarity=0.203 Sum_probs=103.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC-------CCC-------CCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEE
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG-------SSF-------SRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFV 85 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~-------~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 85 (333)
.+++|+|+|..++|||||+++|++. .+. .......|+++....+.+. .....+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~-------------~~~~~~ 68 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-------------TAARHY 68 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-------------CSSCEE
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEE-------------eceeeE
Confidence 4689999999999999999999741 000 0111222444444444443 345679
Q ss_pred EEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 86 ELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 86 ~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
.++||||+..|.......+..+|++|+|+|+.+...-+.. ..+..+...+ ..|+||+.||+|+..
T Consensus 69 ~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~-~~~~~a~~~~--------------~~~iIv~iNK~D~~~ 133 (196)
T d1d2ea3 69 AHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQIG--------------VEHVVVYVNKADAVQ 133 (196)
T ss_dssp EEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHTT--------------CCCEEEEEECGGGCS
T ss_pred EeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHH-HHHHHHHHhc--------------CCcEEEEEecccccc
Confidence 9999999999988888888999999999999987654433 3333344432 357999999999975
Q ss_pred ccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccC
Q 019959 166 KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEA 215 (333)
Q Consensus 166 ~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g 215 (333)
+..+ .+.+..+.+.+...+++.. +.+|++. +||++|
T Consensus 134 ~~~~---~~~i~~~i~~~l~~~~~~~--~~~pii~---------iSa~~g 169 (196)
T d1d2ea3 134 DSEM---VELVELEIRELLTEFGYKG--EETPIIV---------GSALCA 169 (196)
T ss_dssp CHHH---HHHHHHHHHHHHHHTTSCT--TTSCEEE---------CCHHHH
T ss_pred cHHH---HHHHHHHHHHHHHHhCCCc--ccCEEEE---------EEcccc
Confidence 4211 1112345666666666532 2467777 999998
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=5.7e-17 Score=138.99 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=81.3
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhhh
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKDC 99 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~ 99 (333)
++-+|+|||++|||||||+|+|++..+.. +.+.+.....+. .....+.+||++|++.+...
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~~~---------------~~~~~~~l~D~~g~~~~~~~ 62 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAAD---------------YDGSGVTLVDFPGHVKLRYK 62 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEETT---------------GGGSSCEEEECCCCGGGTHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEEEEE---------------eCCeEEEEEecccccchhhH
Confidence 34589999999999999999999887642 222223233332 23445889999999877665
Q ss_pred HHhh----ccCCcEEEEEEECCC-cccHHHHHHHHHHHH----hcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 100 RSIL----YSQINGVIFVHDLSQ-RRTKTSLQKWAVEIA----TSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 100 ~~~~----~~~ad~vIlV~D~s~-~~S~~~l~~~~~~i~----~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
...+ ...++.+++++|+++ ..+++.+..|+..+. ... ..++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 63 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC------------ENGIDILIACNKSELFTA 126 (209)
T ss_dssp HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHS------------TTCCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHH------------hccCCeEEEEEeeccccc
Confidence 5443 445689999999765 566777666664432 222 247999999999999765
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=3.6e-16 Score=130.78 Aligned_cols=153 Identities=15% Similarity=0.112 Sum_probs=91.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhhh--
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYKD-- 98 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~-- 98 (333)
-.|+|+|.+|||||||+|+|++..... ....+............ ....+.+||++|......
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 70 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE---------------GAYQAIYVDTPGLHMEEKRA 70 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE---------------TTEEEEEESSSSCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeec---------------CCceeEeecCCCceecchhh
Confidence 369999999999999999999765321 11211111111122222 234566789888432211
Q ss_pred -------hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCcc
Q 019959 99 -------CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 171 (333)
Q Consensus 99 -------~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v 171 (333)
........+++++++.|.++.. .....+...+... ..|+++|.||+|+.... .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~~---------------~~~~i~v~~k~d~~~~~--~- 130 (179)
T d1egaa1 71 INRLMNKAASSSIGDVELVIFVVEGTRWT--PDDEMVLNKLREG---------------KAPVILAVNKVDNVQEK--A- 130 (179)
T ss_dssp HHHHHTCCTTSCCCCEEEEEEEEETTCCC--HHHHHHHHHHHSS---------------SSCEEEEEESTTTCCCH--H-
T ss_pred hhhhhhhccccchhhcceeEEEEecCccc--hhHHHHHHHhhhc---------------cCceeeeeeeeeccchh--h-
Confidence 1111234678888888877543 2223344444433 56899999999987652 1
Q ss_pred CcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHH
Q 019959 172 SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 227 (333)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~ 227 (333)
++......+..+++. .++++ +||++|.|++++++.+.+
T Consensus 131 ---~~~~~~~~~~~~~~~------~~~~~---------vSA~~g~gi~~L~~~i~~ 168 (179)
T d1egaa1 131 ---DLLPHLQFLASQMNF------LDIVP---------ISAETGLNVDTIAAIVRK 168 (179)
T ss_dssp ---HHHHHHHHHHTTSCC------SEEEE---------CCTTTTTTHHHHHHHHHT
T ss_pred ---hhhhHhhhhhhhcCC------CCEEE---------EeCcCCCCHHHHHHHHHH
Confidence 112444445444543 45666 999999998887777654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=2.6e-15 Score=129.30 Aligned_cols=151 Identities=19% Similarity=0.174 Sum_probs=97.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--------CCCC----CC-----CcccceeEEEEEEEeCCCCCCCCccCCCCCce
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--------SSFS----RP-----SQTIGCTVGVKHITYGSSGSSSNSIKGDSERD 82 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--------~~~~----~~-----~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 82 (333)
++++|+++|..++|||||+++|+.. .+.. .. ...+..+.....+.+ ..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~---------------~~ 66 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET---------------AK 66 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC---------------SS
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe---------------CC
Confidence 4689999999999999999999731 1100 00 002222333334443 34
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-EEEEeeCc
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKA 161 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~P-iivVgNK~ 161 (333)
.++.|+||||+.+|.......+..+|++|+|+|+.+....+..+.|.. +... ++| +||+.||+
T Consensus 67 ~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~-~~~~---------------gi~~iiv~iNK~ 130 (204)
T d2c78a3 67 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILL-ARQV---------------GVPYIVVFMNKV 130 (204)
T ss_dssp CEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHH-HHHT---------------TCCCEEEEEECG
T ss_pred eEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHH-HHHc---------------CCCeEEEEEEec
Confidence 678999999999999888888999999999999999877766555543 3333 455 77889999
Q ss_pred CCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccC
Q 019959 162 DVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEA 215 (333)
Q Consensus 162 Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g 215 (333)
|+.+... ...++.++.+.+...+++. ...++++. .||..+
T Consensus 131 D~~~~~~---~~~~~~~~i~~~l~~~~~~--~~~i~~i~---------~sa~~~ 170 (204)
T d2c78a3 131 DMVDDPE---LLDLVEMEVRDLLNQYEFP--GDEVPVIR---------GSALLA 170 (204)
T ss_dssp GGCCCHH---HHHHHHHHHHHHHHHTTSC--TTTSCEEE---------CCHHHH
T ss_pred ccCCCHH---HHHHHHHHHHHHHHhcCCC--cccceeee---------eechhh
Confidence 9875321 0112224455555555532 12355655 777654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=3.7e-15 Score=124.69 Aligned_cols=167 Identities=16% Similarity=0.132 Sum_probs=86.1
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc-
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH- 93 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~- 93 (333)
.-|....++|+|+|.+|||||||+|+|++...........+........... .....+..++..+.
T Consensus 10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 76 (188)
T d1puia_ 10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-------------DGKRLVDLPGYGYAE 76 (188)
T ss_dssp GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-------------TTEEEEECCCCC---
T ss_pred HCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecc-------------cccceeeeecccccc
Confidence 4456778999999999999999999999775432222111111111111111 11122222222221
Q ss_pred ------hhhhhhH---HhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 94 ------ERYKDCR---SILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 94 ------e~~~~~~---~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
....... ......++.++.+.|......... ..++..+... ..++++|+||+|+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------~~~~~~v~~k~D~~ 140 (188)
T d1puia_ 77 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS---------------NIAVLVLLTKADKL 140 (188)
T ss_dssp ---CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT---------------TCCEEEEEECGGGS
T ss_pred hhhhhhhhhhhhhhhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhhc---------------cccccchhhhhhcc
Confidence 1111111 111234556666666665544333 3455555554 57899999999988
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHH
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 228 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~ 228 (333)
..... ......+.+.+.. +....+++. +||++|.|++++++.|.+.
T Consensus 141 ~~~~~-------~~~~~~~~~~l~~--~~~~~~~i~---------vSA~~g~Gid~L~~~i~~~ 186 (188)
T d1puia_ 141 ASGAR-------KAQLNMVREAVLA--FNGDVQVET---------FSSLKKQGVDKLRQKLDTW 186 (188)
T ss_dssp CHHHH-------HHHHHHHHHHHGG--GCSCEEEEE---------CBTTTTBSHHHHHHHHHHH
T ss_pred CHHHH-------HHHHHHHHHHHHh--hCCCCcEEE---------EeCCCCCCHHHHHHHHHHH
Confidence 65211 1222333333211 111245666 9999999999998877543
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.56 E-value=2.7e-14 Score=124.35 Aligned_cols=155 Identities=16% Similarity=0.156 Sum_probs=99.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC--CCCC-------------------------------CCCcccceeEEEEEEEeC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG--SSFS-------------------------------RPSQTIGCTVGVKHITYG 66 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~~ 66 (333)
..++|+++|..++|||||+.+|+.. .+.. +....++.+.....+.
T Consensus 8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-- 85 (222)
T d1zunb3 8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS-- 85 (222)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE--
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe--
Confidence 5679999999999999999999732 1110 0001111122222222
Q ss_pred CCCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCC
Q 019959 67 SSGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGG 146 (333)
Q Consensus 67 ~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~ 146 (333)
.....+.|.|+||++.|..........+|++|+|+|+.....-+....|. .+...
T Consensus 86 -------------~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~-~~~~~----------- 140 (222)
T d1zunb3 86 -------------TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSY-IASLL----------- 140 (222)
T ss_dssp -------------CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH-HHHHT-----------
T ss_pred -------------ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHH-HHHHc-----------
Confidence 23467999999999999988888889999999999998876544433332 23332
Q ss_pred CCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCH
Q 019959 147 PGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 218 (333)
Q Consensus 147 ~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v 218 (333)
+++ +|++.||+|+.+... -...++.++...+.+..++.. .+++|+. +||++|.|+
T Consensus 141 ----gv~~iiv~vNK~D~~~~~~--~~~~~~~~~l~~~~~~~~~~~--~~i~~IP---------iSA~~G~ni 196 (222)
T d1zunb3 141 ----GIKHIVVAINKMDLNGFDE--RVFESIKADYLKFAEGIAFKP--TTMAFVP---------MSALKGDNV 196 (222)
T ss_dssp ----TCCEEEEEEECTTTTTSCH--HHHHHHHHHHHHHHHTTTCCC--SEEEEEE---------CCTTTCTTT
T ss_pred ----CCCEEEEEEEccccccccc--eehhhhHHHHhhhhHhhccCC--CceEEEE---------EEcccCccC
Confidence 455 788999999986431 111122244555555555431 2366777 999999877
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=6e-14 Score=123.43 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=102.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC--CCC-----------------------------CCCCcccceeEEEEEEEeCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG--SSF-----------------------------SRPSQTIGCTVGVKHITYGS 67 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 67 (333)
..+++|+|+|...+|||||+.+|+.. .+. .+....++++.....+.+
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-- 81 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-- 81 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc--
Confidence 34589999999999999999999621 110 011122333344444444
Q ss_pred CCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCccc-------HHHHHHHHHHHHhcCCCCC
Q 019959 68 SGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRT-------KTSLQKWAVEIATSGTFSA 140 (333)
Q Consensus 68 ~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S-------~~~l~~~~~~i~~~~~~~~ 140 (333)
..+++.|.||||+.+|......-+..+|++|+|+|+..... -+....| ..+...
T Consensus 82 -------------~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~~~~~~----- 142 (239)
T d1f60a3 82 -------------PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFTL----- 142 (239)
T ss_dssp -------------SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHHT-----
T ss_pred -------------CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH-HHHHHc-----
Confidence 35789999999999999888888999999999999986421 1222233 222233
Q ss_pred CCCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHH
Q 019959 141 PLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDK 219 (333)
Q Consensus 141 ~~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~ 219 (333)
++| +||+.||+|+.+.+.. ...++.++...+....+... ..++|+. +||++|.|+-
T Consensus 143 ----------gv~~iiv~iNKmD~~~~d~~--~~~~~~~el~~~l~~~~~~~--~~i~~ip---------iSa~~G~ni~ 199 (239)
T d1f60a3 143 ----------GVRQLIVAVNKMDSVKWDES--RFQEIVKETSNFIKKVGYNP--KTVPFVP---------ISGWNGDNMI 199 (239)
T ss_dssp ----------TCCEEEEEEECGGGGTTCHH--HHHHHHHHHHHHHHHHTCCG--GGCCEEE---------CCTTTCBTTT
T ss_pred ----------CCCeEEEEEECCCCCCCCHH--HHHHHHHHHHHHHHhcCCCC--CcEEEEE---------EEccCCCcce
Confidence 455 7889999998864311 11123355666666666532 1255666 9999997654
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.45 E-value=8e-14 Score=123.13 Aligned_cols=164 Identities=18% Similarity=0.139 Sum_probs=86.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCC--CCC-----------------------------CCCcccceeEEEEEEEeCC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGS--SFS-----------------------------RPSQTIGCTVGVKHITYGS 67 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 67 (333)
...++|+|+|..++|||||+.+|+... +.. +....+.++.....+.
T Consensus 22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~--- 98 (245)
T d1r5ba3 22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE--- 98 (245)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE---
T ss_pred CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccc---
Confidence 346799999999999999999996311 100 0000011111111111
Q ss_pred CCCCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccH------HHHHHHHHHHHhcCCCCCC
Q 019959 68 SGSSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTK------TSLQKWAVEIATSGTFSAP 141 (333)
Q Consensus 68 ~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~------~~l~~~~~~i~~~~~~~~~ 141 (333)
.....+.+.||||+..|..........+|++|+|+|+.+..-- ......+..+...
T Consensus 99 ------------~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~------ 160 (245)
T d1r5ba3 99 ------------TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------ 160 (245)
T ss_dssp ------------CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------
T ss_pred ------------cccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc------
Confidence 2346799999999999998888888899999999999874210 0122222223333
Q ss_pred CCCCCCCCCCCc-EEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHH
Q 019959 142 LASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 220 (333)
Q Consensus 142 ~~~~~~~~~~~P-iivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~ 220 (333)
+++ ++++.||+|+...+..+-...++.++...+.++.+......++||+. +||++|.|+.+
T Consensus 161 ---------~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VP---------iSA~~G~nI~~ 222 (245)
T d1r5ba3 161 ---------GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMP---------VSAYTGQNVKD 222 (245)
T ss_dssp ---------TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEE---------CBTTTTBTTSS
T ss_pred ---------CCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEE---------eeccCCCCccc
Confidence 344 78999999997532222111222344444444432111112367777 99999998865
Q ss_pred H
Q 019959 221 A 221 (333)
Q Consensus 221 ~ 221 (333)
.
T Consensus 223 ~ 223 (245)
T d1r5ba3 223 R 223 (245)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.45 E-value=9e-14 Score=121.12 Aligned_cols=159 Identities=15% Similarity=0.219 Sum_probs=96.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC--CCC-----------------------------CCCCcccceeEEEEEEEeCCCC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG--SSF-----------------------------SRPSQTIGCTVGVKHITYGSSG 69 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 69 (333)
+++|+|+|..++|||||+.+|+.. .+. .+....+..+.....+.
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~----- 77 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE----- 77 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-----
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEe-----
Confidence 689999999999999999999631 000 00111111122222222
Q ss_pred CCCCccCCCCCceEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccH------HHHHHHHHHHHhcCCCCCCCC
Q 019959 70 SSSNSIKGDSERDFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTK------TSLQKWAVEIATSGTFSAPLA 143 (333)
Q Consensus 70 ~~~~~i~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~------~~l~~~~~~i~~~~~~~~~~~ 143 (333)
...+.++|.||||+..|.......+.-+|++|+|+|+.+...- ......+..+...+
T Consensus 78 ----------~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~------- 140 (224)
T d1jnya3 78 ----------TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG------- 140 (224)
T ss_dssp ----------CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT-------
T ss_pred ----------cCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhC-------
Confidence 2357799999999999999988889999999999999875311 11212222222221
Q ss_pred CCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHH
Q 019959 144 SGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDK 219 (333)
Q Consensus 144 ~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~ 219 (333)
..++|++.||+|+.........-..+.+....+....+... ..++|+. +||..|.|+.
T Consensus 141 -------~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~--~~i~~IP---------ISA~~G~NV~ 198 (224)
T d1jnya3 141 -------LDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNT--NKVRFVP---------VVAPSGDNIT 198 (224)
T ss_dssp -------CTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCC--TTCEEEE---------CBTTTTBTTT
T ss_pred -------CCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCc--ccCeEEE---------EEccCCCCcc
Confidence 24688899999997543222111222344555555555422 1355666 9999998763
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.33 E-value=2.2e-12 Score=121.57 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=67.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccc---eeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchhhh
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIG---CTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHERYK 97 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~~~ 97 (333)
.++|+|+|.+|||||||+|+|++...........| .+.....+... ..-.+.||||||.....
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~--------------~~~~~~l~DtPG~~~~~ 121 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP--------------NIPNVVFWDLPGIGSTN 121 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS--------------SCTTEEEEECCCGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc--------------CCCeEEEEeCCCccccc
Confidence 37999999999999999999997543221111111 11111222221 11127799999943321
Q ss_pred h-----hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 98 D-----CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 98 ~-----~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
. +....+..+|++|++.|.. -+-.+ ..++..+.+. +.|+++|.||+|..
T Consensus 122 ~~~~~~~~~~~~~~~d~~l~~~~~~--~~~~d-~~l~~~l~~~---------------~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 122 FPPDTYLEKMKFYEYDFFIIISATR--FKKND-IDIAKAISMM---------------KKEFYFVRTKVDSD 175 (400)
T ss_dssp CCHHHHHHHTTGGGCSEEEEEESSC--CCHHH-HHHHHHHHHT---------------TCEEEEEECCHHHH
T ss_pred ccHHHHHHHhhhhcceEEEEecCCC--CCHHH-HHHHHHHHHc---------------CCCEEEEEeCcccc
Confidence 1 2223456789998887643 22222 2445556555 57999999999964
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.28 E-value=3.4e-11 Score=107.07 Aligned_cols=111 Identities=19% Similarity=0.248 Sum_probs=81.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCC-----------------CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS-SFSR-----------------PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~-~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
+|+|+|..++|||||+.+|+... .... ....+.+......+.++ ..+
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~---------------~~~ 68 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR---------------GHR 68 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET---------------TEE
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccc---------------ccc
Confidence 59999999999999999997321 1000 00111222223344443 467
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
++|+||||+.+|.......++-+|++|+|+|+.+...-.....|.. +.+. ++|++++.||+|..
T Consensus 69 ~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~-~~~~---------------~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 69 VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTV-AERL---------------GLPRMVVVTKLDKG 132 (267)
T ss_dssp EEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---------------TCCEEEEEECGGGC
T ss_pred eeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHh-hhhc---------------cccccccccccccc
Confidence 9999999999999988888999999999999999887776666643 3343 58999999999974
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=2.3e-11 Score=108.53 Aligned_cols=129 Identities=21% Similarity=0.229 Sum_probs=90.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC--CCCC----------------CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEE
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG--SSFS----------------RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFF 84 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~--~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (333)
+|+|+|..++|||||+.+++.. .... +....+.+......+.+ +..+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~---------------~~~~ 72 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW---------------KDHR 72 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE---------------TTEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc---------------CCeE
Confidence 6999999999999999999732 1100 00111112222233333 3578
Q ss_pred EEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCC
Q 019959 85 VELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 164 (333)
Q Consensus 85 l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~ 164 (333)
++|+||||+.+|.......++-+|++|+|+|+.+.-.-.....|.. ..+. ++|.+++.||+|..
T Consensus 73 ~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~-a~~~---------------~lP~i~fINKmDr~ 136 (276)
T d2bv3a2 73 INIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---------------KVPRIAFANKMDKT 136 (276)
T ss_dssp EEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHH-HHTT---------------TCCEEEEEECTTST
T ss_pred EEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHH-HHHc---------------CCCEEEEEeccccc
Confidence 9999999999999888888999999999999999887776666643 3343 68999999999987
Q ss_pred CccCCccCcccHHHHHHHHHHHcCCC
Q 019959 165 AKEGTRGSSGNLVDAARQWVEKQGLL 190 (333)
Q Consensus 165 ~~~~r~v~~~~~~~~~~~~~~~~~~~ 190 (333)
..+- .+...++.+.++..
T Consensus 137 ~ad~--------~~~l~ei~~~l~~~ 154 (276)
T d2bv3a2 137 GADL--------WLVIRTMQERLGAR 154 (276)
T ss_dssp TCCH--------HHHHHHHHHTTCCC
T ss_pred cccc--------chhHHHHHHHhCCC
Confidence 6531 24455555566654
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=2.1e-11 Score=112.06 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=85.5
Q ss_pred cceE-EEEECCCCCCHHHHHHHHHc--CCCC--------------CCCCcccceeEEEEEEEeCCCCCCC-CccCCCCCc
Q 019959 20 GQVR-VLVVGDSGVGKTSLVNLIVK--GSSF--------------SRPSQTIGCTVGVKHITYGSSGSSS-NSIKGDSER 81 (333)
Q Consensus 20 ~~ik-I~ivG~~~vGKSSLl~~l~~--~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 81 (333)
..+| |+|+|..++|||||+.+|+. +... .+....+++......+.+....... ......+++
T Consensus 15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (341)
T d1n0ua2 15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 94 (341)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence 4464 99999999999999999972 1110 0001111111111222211000000 000112357
Q ss_pred eEEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCc
Q 019959 82 DFFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 161 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~ 161 (333)
.+.++|+||||+..|.......++-+|++|+|+|+...-..+....|...... ++|+++|.||+
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~----------------~~p~i~viNKi 158 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE----------------RIKPVVVINKV 158 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT----------------TCEEEEEEECH
T ss_pred ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc----------------CCCeEEEEECc
Confidence 78999999999999999888889999999999999998887776666654433 58999999999
Q ss_pred CCCCc
Q 019959 162 DVAAK 166 (333)
Q Consensus 162 Dl~~~ 166 (333)
|....
T Consensus 159 Dr~~~ 163 (341)
T d1n0ua2 159 DRALL 163 (341)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 97644
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.18 E-value=1.7e-10 Score=102.09 Aligned_cols=123 Identities=24% Similarity=0.255 Sum_probs=71.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCchh--
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKGSSFS-RPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGHER-- 95 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~e~-- 95 (333)
...++|+|+|.+|||||||+|.+++..... ...+..+.+........+ ...+.++||||...
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~---------------g~~i~viDTPGl~~~~ 94 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA---------------GFTLNIIDTPGLIEGG 94 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET---------------TEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEec---------------cEEEEEEeeecccCCc
Confidence 456899999999999999999999875432 221111112222222332 35699999999321
Q ss_pred -----hhhhHHh--hccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCcc
Q 019959 96 -----YKDCRSI--LYSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 167 (333)
Q Consensus 96 -----~~~~~~~--~~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~ 167 (333)
....... .....|++++|++++... +-.. ...+..+...... ..-.++|||.||+|....+
T Consensus 95 ~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~-~~~l~~l~~~fg~----------~~~~~~ivv~t~~D~~~~~ 163 (257)
T d1h65a_ 95 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGK----------GIWNKAIVALTHAQFSPPD 163 (257)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHH-HHHHHHHHHHHCG----------GGGGGEEEEEECCSCCCGG
T ss_pred chHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHH-HHHHHHHHHHcch----------hhhhCEEEEEECcccCCcC
Confidence 1111111 234678999999987642 2222 2223333322110 0124789999999998653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.04 E-value=2.9e-10 Score=98.42 Aligned_cols=70 Identities=17% Similarity=0.086 Sum_probs=42.7
Q ss_pred EEEEEEeCCCchhhhhhHHh---h--ccCCcEEEEEEECCCccc---HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE
Q 019959 83 FFVELWDISGHERYKDCRSI---L--YSQINGVIFVHDLSQRRT---KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 154 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~---~--~~~ad~vIlV~D~s~~~S---~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi 154 (333)
..+.+.|++|+..+...... + ....++++++.|+..... +.........+... ...|.
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~ 160 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--------------LGATT 160 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--------------HTSCE
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--------------hCCCc
Confidence 34889999998765433222 1 225678999999865433 22222112222222 15799
Q ss_pred EEEeeCcCCCCc
Q 019959 155 VVIGNKADVAAK 166 (333)
Q Consensus 155 ivVgNK~Dl~~~ 166 (333)
++|.||+|+...
T Consensus 161 ivvinK~D~~~~ 172 (244)
T d1yrba1 161 IPALNKVDLLSE 172 (244)
T ss_dssp EEEECCGGGCCH
T ss_pred eeeeeccccccH
Confidence 999999999865
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=7.2e-09 Score=94.39 Aligned_cols=110 Identities=11% Similarity=-0.024 Sum_probs=56.7
Q ss_pred EEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 84 FVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 84 ~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
.+.|.+|.|.-.-. ..+...+|.+++|.+....+..+.++.-+-+ . +=++|.||+|+
T Consensus 148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e---~-----------------aDi~VvNKaD~ 204 (327)
T d2p67a1 148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLME---V-----------------ADLIVINKDDG 204 (327)
T ss_dssp SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHH---H-----------------CSEEEECCCCT
T ss_pred CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhc---c-----------------ccEEEEEeecc
Confidence 35666776632111 1345679999999887665544433333333 2 33577899998
Q ss_pred CCccCCccCcccHHHHHHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 164 AAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 164 ~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
......... ..+.+.....+.-..-....|++. |||++|.|++++++.|.+..
T Consensus 205 ~~~~~~~~~----~~~~~~al~~~~~~~~~w~p~V~~---------~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 205 DNHTNVAIA----RHMYESALHILRRKYDEWQPRVLT---------CSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp TCHHHHHHH----HHHHHHHHHHSCCSBTTBCCEEEE---------CBGGGTBSHHHHHHHHHHHH
T ss_pred cchHHHHHH----HHHHHHHhhhcccCCCCCcceeEE---------EEeeCCCCHHHHHHHHHHHH
Confidence 864211000 011122222221111111245666 99999999999998886543
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.77 E-value=4.1e-08 Score=87.83 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=75.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCcccceeEEEEEEEeCCC------CCCCC--------------------cc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGSS-FSRPSQTIGCTVGVKHITYGSS------GSSSN--------------------SI 75 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~------~~~~~--------------------~i 75 (333)
+|+|||..++|||||+|+|++..+ .....++..+-...+...-... ..... ..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTN 107 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSST
T ss_pred eEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCCC
Confidence 899999999999999999999886 3434333322222222111000 00000 00
Q ss_pred CCCCCc----------eEEEEEEeCCCch-------------hhhhhHHhhccCCc-EEEEEEECCCcccHHHHHHHHHH
Q 019959 76 KGDSER----------DFFVELWDISGHE-------------RYKDCRSILYSQIN-GVIFVHDLSQRRTKTSLQKWAVE 131 (333)
Q Consensus 76 ~~~~~~----------~~~l~i~Dt~G~e-------------~~~~~~~~~~~~ad-~vIlV~D~s~~~S~~~l~~~~~~ 131 (333)
.+.... ...+.|+|+||.. ....+...|+...+ ++++|.+++...+-..+..|...
T Consensus 108 ~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~ 187 (299)
T d2akab1 108 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE 187 (299)
T ss_dssp TCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHH
T ss_pred cCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHH
Confidence 000000 1137899999931 12344555666666 45567777766666666677776
Q ss_pred HHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCc
Q 019959 132 IATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 166 (333)
Q Consensus 132 i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~ 166 (333)
+... ..++++|.||+|+.+.
T Consensus 188 ~~~~---------------~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 188 VDPQ---------------GQRTIGVITKLDLMDE 207 (299)
T ss_dssp HCTT---------------CSSEEEEEECGGGSCT
T ss_pred hCcC---------------CCceeeEEeccccccc
Confidence 6444 3579999999998865
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.68 E-value=2.9e-08 Score=89.78 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=46.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCc--ccceeEEEEEEEeCCCCCCCCccCC-------CCCceEEEEEEeCCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQ--TIGCTVGVKHITYGSSGSSSNSIKG-------DSERDFFVELWDISG 92 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~~~l~i~Dt~G 92 (333)
+||+|||.||||||||+|+|++........| |+...........+.....-..+.. .......++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 5899999999999999999997654333333 3222222221111100000000110 112346799999999
Q ss_pred chh----hhhhHHhh---ccCCcEEEEEEECCC
Q 019959 93 HER----YKDCRSIL---YSQINGVIFVHDLSQ 118 (333)
Q Consensus 93 ~e~----~~~~~~~~---~~~ad~vIlV~D~s~ 118 (333)
--. ...+...+ ++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 322 12222233 568999999999864
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.68 E-value=3.7e-08 Score=88.48 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=43.9
Q ss_pred EEEEEeCCCchh-------------hhhhHHhhccCCcEEEEEE-ECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 019959 84 FVELWDISGHER-------------YKDCRSILYSQINGVIFVH-DLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGG 149 (333)
Q Consensus 84 ~l~i~Dt~G~e~-------------~~~~~~~~~~~ad~vIlV~-D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 149 (333)
.+.|+||||... ...+...|+..++.+|+++ +.+....-.....+..++...
T Consensus 132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-------------- 197 (306)
T d1jwyb_ 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-------------- 197 (306)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS--------------
T ss_pred CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcC--------------
Confidence 477999999321 2345666788999877765 444433333344555555332
Q ss_pred CCCcEEEEeeCcCCCCc
Q 019959 150 LPVPYVVIGNKADVAAK 166 (333)
Q Consensus 150 ~~~PiivVgNK~Dl~~~ 166 (333)
...+++|.||+|....
T Consensus 198 -~~r~i~Vitk~D~~~~ 213 (306)
T d1jwyb_ 198 -GKRTIGVITKLDLMDK 213 (306)
T ss_dssp -CSSEEEEEECTTSSCS
T ss_pred -CCeEEEEEeccccccc
Confidence 3579999999998754
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.64 E-value=6.3e-08 Score=86.79 Aligned_cols=97 Identities=18% Similarity=0.176 Sum_probs=55.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC--CC-CCCcccceeEEEEEEEeCCCCC--CCCccCCCCCceEEEEEEeCCCch
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKGSS--FS-RPSQTIGCTVGVKHITYGSSGS--SSNSIKGDSERDFFVELWDISGHE 94 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~~~--~~-~~~~t~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~i~Dt~G~e 94 (333)
..+||.|||.||||||||+|++++... .. .+..|+...... +.++...- .........-....+++.|++|.-
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~--v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv 86 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAK--VAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 86 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEE--EEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEE--EeccccchhhhhhcccCCceecccceeeeccccc
Confidence 447999999999999999999997643 22 333343333333 33321000 000000000123468999999821
Q ss_pred ----hhh---hhHHhhccCCcEEEEEEECCC
Q 019959 95 ----RYK---DCRSILYSQINGVIFVHDLSQ 118 (333)
Q Consensus 95 ----~~~---~~~~~~~~~ad~vIlV~D~s~ 118 (333)
+.. ...-..++.+|++|+|+|+.+
T Consensus 87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccccHHHHHHHhhccceeEEEEeccC
Confidence 111 122234779999999999866
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.61 E-value=5e-08 Score=86.64 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=51.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CcccceeEEEEEEEeCCCCCC-CCccCCCCCc--eEEEEEEeCCCch-
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSRP--SQTIGCTVGVKHITYGSSGSS-SNSIKGDSER--DFFVELWDISGHE- 94 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~i~Dt~G~e- 94 (333)
.+||.|||-||||||||++++++....... ..|+..... .+.++...-. -..+. ...+ ...+++.|+||--
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~g--vv~v~d~r~~~l~~~~-~~~~~~~a~i~~~Di~GLi~ 78 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIV-KPERILPTTMEFVDIAGLVA 78 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHH-CCSEEECCEEEEEECCSCCT
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceE--EEecccHhHHHHHHhc-CCCceeeeeEEEEEccccCC
Confidence 369999999999999999999976543322 233322222 2333200000 00000 0001 1358899999932
Q ss_pred ---hhhhhHH---hhccCCcEEEEEEECC
Q 019959 95 ---RYKDCRS---ILYSQINGVIFVHDLS 117 (333)
Q Consensus 95 ---~~~~~~~---~~~~~ad~vIlV~D~s 117 (333)
....+.. ..++.+|++|+|+|+.
T Consensus 79 ga~~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 79 GASKGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp THHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred CcccCCCccHHHHHHHHhccceEEEeecc
Confidence 2222222 2367899999999874
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.53 E-value=1.2e-07 Score=86.04 Aligned_cols=109 Identities=15% Similarity=0.083 Sum_probs=59.3
Q ss_pred EEEEEEeCCCchhhhhhHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcC
Q 019959 83 FFVELWDISGHERYKDCRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 162 (333)
Q Consensus 83 ~~l~i~Dt~G~e~~~~~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~D 162 (333)
+.+.|..|.|.-.-.. .....+|.+|+|......+..+.++. .+.+ +.=++|.||+|
T Consensus 144 ~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~---gilE-----------------~aDi~vvNKaD 200 (323)
T d2qm8a1 144 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKK---GIFE-----------------LADMIAVNKAD 200 (323)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCT---THHH-----------------HCSEEEEECCS
T ss_pred CCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhh---hHhh-----------------hhheeeEeccc
Confidence 4567777777322111 23456999999999987765443322 2222 24468889999
Q ss_pred CCCccCCccCcccHHHHHHHHHHHcCCCCC---CcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHH
Q 019959 163 VAAKEGTRGSSGNLVDAARQWVEKQGLLPS---SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 229 (333)
Q Consensus 163 l~~~~~r~v~~~~~~~~~~~~~~~~~~~~~---~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l 229 (333)
+.... ... .....++...+.+... ....|++. |||++|.|++++++.+.+..
T Consensus 201 ~~~~~--~~~----~~~~~~~~~~l~~~~~~~~~~~p~V~~---------~Sa~~g~Gi~el~~~I~~~~ 255 (323)
T d2qm8a1 201 DGDGE--RRA----SAAASEYRAALHILTPPSATWTPPVVT---------ISGLHGKGLDSLWSRIEDHR 255 (323)
T ss_dssp TTCCH--HHH----HHHHHHHHHHHTTBCCSBTTBCCCEEE---------EBTTTTBSHHHHHHHHHHHH
T ss_pred cccch--HHH----HHHHHHHHHHhhcccccccCCCCceEE---------EEecCCCCHHHHHHHHHHHH
Confidence 87652 110 0111222233332110 01245666 99999999999998886543
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.17 E-value=9.8e-07 Score=77.87 Aligned_cols=61 Identities=28% Similarity=0.474 Sum_probs=37.6
Q ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCC
Q 019959 15 GGPPTGQVRVLVVGDSGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISG 92 (333)
Q Consensus 15 ~~~~~~~ikI~ivG~~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G 92 (333)
.......++|+|||.||||||||+|+|.+.... ....+.|.+.....+..+ . .+.+.||||
T Consensus 106 ~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~-~~~~~pG~Tr~~~~i~~~--------------~--~~~l~DTPG 166 (273)
T d1puja_ 106 KGVKPRAIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKVG--------------K--ELELLDTPG 166 (273)
T ss_dssp TTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEET--------------T--TEEEEECCC
T ss_pred ccCCCCceEEEEEecCccchhhhhhhhhccceE-EECCcccccccceEEECC--------------C--CeEEecCCC
Confidence 334566799999999999999999999986542 222233444433444332 1 288999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.68 E-value=6.2e-05 Score=63.95 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=59.0
Q ss_pred ccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 104 YSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
..+.|.+++|+++.+++ +...+.+|+-..... +++.+||.||+||.+++. .+....
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---------------~i~pvIvlnK~DL~~~~~--------~~~~~~ 64 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---------------ELETVMVINKMDLYDEDD--------LRKVRE 64 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---------------TCEEEEEECCGGGCCHHH--------HHHHHH
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---------------CCCEEEEEeCcccCCHHH--------HHHHHH
Confidence 46889999999998865 566678888776665 689999999999986521 122333
Q ss_pred HHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHH
Q 019959 183 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225 (333)
Q Consensus 183 ~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l 225 (333)
+...+... .+.+. +||+++.|++++.+.+
T Consensus 65 ~~~~~~~~-----~~v~~---------vSa~~~~g~~~L~~~l 93 (225)
T d1u0la2 65 LEEIYSGL-----YPIVK---------TSAKTGMGIEELKEYL 93 (225)
T ss_dssp HHHHHTTT-----SCEEE---------CCTTTCTTHHHHHHHH
T ss_pred hhcccccc-----eeEEE---------eccccchhHhhHHHHh
Confidence 44433321 34555 9999998887766554
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.66 E-value=4.8e-05 Score=66.61 Aligned_cols=90 Identities=17% Similarity=0.085 Sum_probs=61.1
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHH
Q 019959 100 RSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 179 (333)
Q Consensus 100 ~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~ 179 (333)
....+..+|+||+|.|+.++.+..+ ..+.++.. +.|+|+|.||+||.+. +.
T Consensus 9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~~----------------~Kp~IlVlNK~DLv~~-----------~~ 59 (273)
T d1puja_ 9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDILK----------------NKPRIMLLNKADKADA-----------AV 59 (273)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHCS----------------SSCEEEEEECGGGSCH-----------HH
T ss_pred HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHHc----------------CCCeEEEEECccCCch-----------HH
Confidence 3456889999999999988876443 12222211 4699999999999875 55
Q ss_pred HHHHHHHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHHHHHHHH
Q 019959 180 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l~~~l~~ 231 (333)
.+.|.+.+... ..+.+. +||+++.+.......+.+.+..
T Consensus 60 ~~~w~~~f~~~----~~~~i~---------isa~~~~~~~~~~~~~~~~l~~ 98 (273)
T d1puja_ 60 TQQWKEHFENQ----GIRSLS---------INSVNGQGLNQIVPASKEILQE 98 (273)
T ss_dssp HHHHHHHHHTT----TCCEEE---------CCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCccce---------eecccCCCccccchhhhhhhhh
Confidence 66676655322 133444 9999999887777666554443
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=1.8e-05 Score=67.32 Aligned_cols=22 Identities=50% Similarity=0.629 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..+++|.+|||||||+|+|.++
T Consensus 97 t~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 97 ISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCCHHHHHHhhcch
Confidence 6799999999999999999865
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.0002 Score=60.64 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|-|.-|+|||||+++++..
T Consensus 6 ~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEeeCCCCCHHHHHHHHHhc
Confidence 678899999999999999964
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.31 E-value=2.8e-05 Score=66.34 Aligned_cols=22 Identities=45% Similarity=0.682 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..+++|.+|||||||+|+|+++
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred eEEEECCCCccHHHHHHhhccH
Confidence 6789999999999999999865
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.19 E-value=5e-05 Score=64.77 Aligned_cols=84 Identities=12% Similarity=0.240 Sum_probs=57.6
Q ss_pred ccCCcEEEEEEECCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCCccCCccCcccHHHHHHH
Q 019959 104 YSQINGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 182 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~-S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~~~~r~v~~~~~~~~~~~ 182 (333)
..+.|.+++|+++.+++ ++..+.+++-..... +++.+||.||+||.++.. ..+....
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---------------~i~pvIvlnK~DL~~~~~-------~~~~~~~ 65 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---------------DIQPIICITKMDLIEDQD-------TEDTIQA 65 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---------------TCEEEEEEECGGGCCCHH-------HHHHHHH
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---------------CCCEEEEEecccccccHH-------HHHHHHH
Confidence 45889999999998764 567778887766555 689999999999986521 0122333
Q ss_pred HH---HHcCCCCCCcCCCccccCCCCCceeeeeccCcCHHHHHHHH
Q 019959 183 WV---EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 225 (333)
Q Consensus 183 ~~---~~~~~~~~~~~~p~~E~~~~~~~~~~SAk~g~~v~~~~~~l 225 (333)
+. ...| ++.+. +||+++.|++++.+.+
T Consensus 66 ~~~~y~~~g-------~~v~~---------~Sa~~~~gl~~L~~~l 95 (231)
T d1t9ha2 66 YAEDYRNIG-------YDVYL---------TSSKDQDSLADIIPHF 95 (231)
T ss_dssp HHHHHHHHT-------CCEEE---------CCHHHHTTCTTTGGGG
T ss_pred HHHHHhhcc-------cccee---------eecCChhHHHHHHHhh
Confidence 33 2345 34555 9999998887655443
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.16 E-value=9.8e-05 Score=59.37 Aligned_cols=22 Identities=45% Similarity=0.931 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+||+|+|++|+|||||++.+++
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 5899999999999999999985
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.82 E-value=0.00026 Score=56.58 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|+|.+|||||||+++|...
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999853
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.62 E-value=0.00061 Score=54.06 Aligned_cols=26 Identities=31% Similarity=0.631 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+..++|+|.|.+||||||+.+.|...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999753
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.0025 Score=55.44 Aligned_cols=59 Identities=24% Similarity=0.168 Sum_probs=39.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-----CCcccceeEEEEEEEeCCCCCCCCccCCCCCceEEEEEEeCCCc
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKGSSFSR-----PSQTIGCTVGVKHITYGSSGSSSNSIKGDSERDFFVELWDISGH 93 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 93 (333)
..=|.|+|+.++|||+|+|.|++..+.-. ...|.|+-.....+ .++....+.++||.|.
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~--------------~~~~~~~~~~lDteG~ 95 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH--------------PKKPGHILVLLDTEGL 95 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC--------------SSSTTCEEEEEEECCB
T ss_pred EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec--------------cCCCCceEEEEecccc
Confidence 45788999999999999999997653211 23445543322222 1245667899999993
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00065 Score=53.60 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|+|.+|||||||+++++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999984
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.46 E-value=0.00062 Score=53.79 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.+|+|+|.+||||||+.++|..
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999974
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.37 E-value=0.0012 Score=54.01 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+.+.++|+|+|++||||||+...|...
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999853
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.34 E-value=0.0039 Score=50.04 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
...-|+++|.+|||||||..+++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999964
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.31 E-value=0.0012 Score=53.71 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.5
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+-++|+|+|++||||||+...|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999974
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.23 E-value=0.0012 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|+|+|++||||||+...|...
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988643
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.22 E-value=0.0012 Score=51.17 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|.|.+|||||||+++|+..
T Consensus 5 Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 788999999999999998743
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.05 E-value=0.0017 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|+|+|++||||||+...|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999854
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.05 E-value=0.0017 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|+|+|++||||||+...|...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999743
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.98 E-value=0.0018 Score=50.83 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|.|++||||||+.++|...
T Consensus 5 I~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999843
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.94 E-value=0.0019 Score=51.17 Aligned_cols=20 Identities=40% Similarity=0.393 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
|.|+|.+|||||||+++|+.
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999999974
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.0021 Score=52.23 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++||||+||+++|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999754
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.86 E-value=0.0023 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+|++||||||+...|...
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999743
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.0021 Score=51.61 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+||+|+|++||||||+..+|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999874
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.79 E-value=0.0023 Score=52.18 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+++|.+|||||||.++|..
T Consensus 4 li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0024 Score=50.47 Aligned_cols=20 Identities=40% Similarity=0.705 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.|.|.|++|+|||||+..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 38999999999999999997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.0024 Score=54.48 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|+|++|+|||||++.+.+-
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999864
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0026 Score=49.15 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|++||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999743
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.69 E-value=0.0022 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
++|+|+|++||||||+...|...
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998743
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.67 E-value=0.0028 Score=51.07 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++|||||||++.|...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.0029 Score=51.19 Aligned_cols=21 Identities=24% Similarity=0.646 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|+|++||||+||+++|+..
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999843
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=95.59 E-value=0.003 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|+|++|+|||||++.+++-
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999754
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.55 E-value=0.003 Score=52.20 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|+.|+|||||++.+++-
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcc
Confidence 5889999999999999999864
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0032 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+++|||++|+|||||++.+++-
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 7999999999999999999754
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.49 E-value=0.0036 Score=51.02 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
|+|+|++|||||||+++|+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999974
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.49 E-value=0.0042 Score=50.32 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..|+|+|++||||||+.++|...
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.48 E-value=0.003 Score=54.20 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|||++|+|||||++.+++-
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCChHHHHHHHHhcc
Confidence 7999999999999999999754
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0036 Score=52.90 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999865
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0036 Score=51.85 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
=|+|+|++|||||||+++|+..
T Consensus 4 livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999854
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.41 E-value=0.004 Score=49.34 Aligned_cols=19 Identities=42% Similarity=0.629 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 019959 24 VLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~ 42 (333)
|+|.|.+||||||++++|.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999999886
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.38 E-value=0.0039 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=17.7
Q ss_pred eEEE-EECCCCCCHHHHHHHHH
Q 019959 22 VRVL-VVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 22 ikI~-ivG~~~vGKSSLl~~l~ 42 (333)
+||+ |.|.+||||||+++.|.
T Consensus 1 mkiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 1 MKIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3665 56999999999999996
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.36 E-value=0.0038 Score=54.41 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|+|+.|+|||||++.+++-
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6999999999999999999864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.35 E-value=0.0037 Score=52.80 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCcchhhHhccCC
Confidence 5899999999999999988754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.34 E-value=0.0033 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
+|+++|.+||||||+.+.+..
T Consensus 3 ~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988863
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.33 E-value=0.0043 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|+.|||||||++.+.+-
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4679999999999999999865
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.21 E-value=0.0049 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5899999999999999999865
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0058 Score=49.36 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+.|+|+|++||||||+..+|..
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.20 E-value=0.0048 Score=48.54 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|.|.+||||||+.+.|...
T Consensus 7 I~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 778999999999999988754
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.0051 Score=48.28 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
=|+|+|.+||||||+.+.|..
T Consensus 8 iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367799999999999999974
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.12 E-value=0.0061 Score=50.05 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.+++||++|||||++++.|..
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHH
Confidence 799999999999999998874
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.04 E-value=0.0062 Score=47.75 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
|+|.|.+|+||||+.+.|...
T Consensus 6 I~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 556699999999999999853
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=94.98 E-value=0.0062 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+.+-
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl 52 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGL 52 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999865
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.98 E-value=0.0051 Score=52.11 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|++.|++|+|||||+.++.+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=94.98 E-value=0.0042 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl 49 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGF 49 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=94.94 E-value=0.0036 Score=53.78 Aligned_cols=22 Identities=50% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+|+|+|++|+|||||++.+.+-
T Consensus 46 ~vaivG~sGsGKSTLl~ll~gl 67 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPRF 67 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCCcHHHHHHHHHhc
Confidence 8999999999999999987753
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0047 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|+.|+|||||++.+.+-
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999873
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.89 E-value=0.0063 Score=48.00 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
+|+|+|.+||||||+...|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.88 E-value=0.0085 Score=47.91 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+.+-|+|-|.+|||||||.++|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999973
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.84 E-value=0.01 Score=46.39 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=18.9
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~ 42 (333)
+-|.|+|.+||||||+...|.
T Consensus 7 ~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 7 FTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568899999999999998886
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.0079 Score=51.90 Aligned_cols=21 Identities=43% Similarity=0.658 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.+++||++|||||+|++.|..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHH
Confidence 899999999999999998874
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.0058 Score=51.88 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|++|||||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=94.76 E-value=0.0068 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|+.|+|||||++.+++-
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl 55 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999865
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.70 E-value=0.0065 Score=55.26 Aligned_cols=20 Identities=35% Similarity=0.732 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
++++||++|||||+|++.|.
T Consensus 45 n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 45 NPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp CCEEEECTTSCHHHHHHHHH
T ss_pred CCeEECCCCCCHHHHHHHHH
Confidence 57999999999999996665
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.65 E-value=0.0079 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+++.|++|+|||||++.+.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=94.61 E-value=0.0079 Score=50.95 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|+.|+|||||++.+.+-
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~ 51 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTL 51 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999866
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.59 E-value=0.0097 Score=50.01 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|.|++|+|||||+.+++.
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 578999999999999999874
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.51 E-value=0.014 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
--|+|+|++||||||+..+|...
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999853
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.48 E-value=0.012 Score=48.44 Aligned_cols=25 Identities=20% Similarity=0.504 Sum_probs=21.6
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+.++|+|-|++||||||+..+|...
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999743
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.42 E-value=0.0096 Score=49.65 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+++.|++|+|||||++.+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhc
Confidence 5899999999999999999853
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.37 E-value=0.0094 Score=50.96 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|+|+.|+|||||++.+++-
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHCC
Confidence 4799999999999999999865
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=94.36 E-value=0.0097 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+.+-
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999754
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.36 E-value=0.011 Score=46.66 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.|+|+|.+||||||+.+.|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999996
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.33 E-value=0.018 Score=48.25 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+++.|++|+||||++..+++.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.31 E-value=0.01 Score=48.05 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|++||||||+..+|...
T Consensus 10 iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999753
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.24 E-value=0.0061 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|+|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl 54 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGL 54 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6999999999999999999865
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.011 Score=47.16 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.-|.++|.+|||||||.+.|..
T Consensus 20 ~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 20 CTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999963
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.97 E-value=0.024 Score=50.09 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|+|.|.+|+|||||++.|+..
T Consensus 168 nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEeeccccchHHHHHHhhh
Confidence 5999999999999999999854
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.87 E-value=0.017 Score=48.64 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
+.|.|++|+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999999843
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.81 E-value=0.04 Score=43.38 Aligned_cols=23 Identities=39% Similarity=0.673 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.-|++-|+-|||||||++.++..
T Consensus 34 ~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCccHHHHHHHHHhh
Confidence 36888999999999999999844
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.78 E-value=0.016 Score=48.51 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|.|++|+|||++++.+...
T Consensus 45 ~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 45 RATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.68 E-value=0.01 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.-|.|.|.+|+|||||.+.|..
T Consensus 25 ~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 25 LTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.65 E-value=0.016 Score=50.76 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+++|++|||||.|.+++.+.
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999999853
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.50 E-value=0.019 Score=47.58 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|.|++|+|||+|++.+...
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999753
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.48 E-value=0.018 Score=48.74 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.|++.|++|+|||+|++.+.+
T Consensus 41 ~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 4699999999999999999975
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.40 E-value=0.024 Score=52.31 Aligned_cols=21 Identities=38% Similarity=0.779 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
+|++||++|||||-|+++|..
T Consensus 51 NILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999974
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.40 E-value=0.021 Score=45.94 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+.+-|+|-|..|||||||++.|..
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.024 Score=46.28 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+-|+|-|.+|||||||.+.|..
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999864
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.23 E-value=0.033 Score=46.09 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=19.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHH
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
....-|++||++||||||.+-+|.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 344578999999999999877775
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.96 E-value=0.036 Score=45.78 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=14.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHH
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
..-|++||++||||||.+-+|.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp SEEEEEECSCCC----HHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3468889999999999987776
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.80 E-value=0.027 Score=46.49 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|.|++|+|||||++.++..
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHH
Confidence 3899999999999999999853
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.73 E-value=0.029 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
=|+|.|++||||+|+...|...
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4677799999999999999744
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.66 E-value=0.024 Score=47.30 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.++|.|++|+||||+++.++..
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998753
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.65 E-value=0.034 Score=44.96 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|-|..||||||++..|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.59 E-value=0.03 Score=47.39 Aligned_cols=22 Identities=45% Similarity=0.675 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|++.|++|+|||+|++.+.+.
T Consensus 44 giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHH
Confidence 5999999999999999999853
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.38 E-value=0.033 Score=45.83 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.+++.|++|+||||+++.+..
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHHH
Confidence 489999999999999998874
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.29 E-value=0.034 Score=45.73 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+++.|++|+|||||+..++..
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHH
Confidence 4899999999999999999854
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.18 E-value=0.039 Score=45.44 Aligned_cols=20 Identities=50% Similarity=0.659 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-|+++|++||||||.+-+|.
T Consensus 8 vi~lvGptGvGKTTTiaKLA 27 (207)
T d1okkd2 8 VVLVVGVNGVGKTTTIAKLG 27 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999987775
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.05 E-value=0.039 Score=45.56 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=18.5
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~ 42 (333)
.-|++||++||||||.+-+|.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999998886
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.95 E-value=0.04 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|++.|++|+|||+|++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEecCCCCCchHHHHHHHHH
Confidence 6999999999999999999864
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.80 E-value=0.042 Score=46.71 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.|++.|++|+|||+|++.+...
T Consensus 47 ~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEeeCCCCCCccHHHHHHHHH
Confidence 5899999999999999999853
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.047 Score=43.47 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
=+.|.|++|+|||+|+..|+..
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.63 E-value=0.05 Score=44.76 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 019959 24 VLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~ 42 (333)
|+++|++||||||.+-+|.
T Consensus 13 i~lvGp~GvGKTTTiaKLA 31 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLA 31 (207)
T ss_dssp EEEECCTTTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999998886
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.62 E-value=0.011 Score=46.93 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 019959 24 VLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~ 42 (333)
.+|+|+.|+|||||+.++.
T Consensus 27 tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4678999999999999995
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.03 E-value=0.05 Score=46.35 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|++.|++|+|||+|++++...
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcchhHHHHHHHH
Confidence 5999999999999999999854
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.02 E-value=0.078 Score=42.21 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Q 019959 21 QVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 21 ~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+-|+|.|..||||||+.+.|...
T Consensus 3 p~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
Confidence 367889999999999999988643
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=90.95 E-value=0.13 Score=40.88 Aligned_cols=119 Identities=10% Similarity=0.182 Sum_probs=60.9
Q ss_pred CchhhhhhhhhccCCCCCCcceEEEEECC-CCCCHHHHHHHHHcCCCCCCCCcccceeEEEEEEEeCCCCCCCCccCCCC
Q 019959 1 MFWKERERENKELNGGPPTGQVRVLVVGD-SGVGKTSLVNLIVKGSSFSRPSQTIGCTVGVKHITYGSSGSSSNSIKGDS 79 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ikI~ivG~-~~vGKSSLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (333)
|||.......++.. ....+.+||+|+|. .++|-+ |+.+|..+.....
T Consensus 5 ~~~~~~~~~~~~~~-~~~k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~------------------------------ 52 (175)
T d7mdha1 5 VFCTTYDLKAEDKT-KSWKKLVNIAVSGAAGMISNH-LLFKLASGEVFGQ------------------------------ 52 (175)
T ss_dssp GGCC-------------CCCCEEEEEETTTSHHHHH-HHHHHHHTTTTCT------------------------------
T ss_pred eeecccccccchhh-hccCCCcEEEEECCCcHHHHH-HHHHHHcCcccCC------------------------------
Confidence 57765554333322 22335589999996 778855 5556665543211
Q ss_pred CceEEEEEEeCCCchhh-h--------------------hhHHhhccCCcEEEEEEECCCcc--cHHH--------HHHH
Q 019959 80 ERDFFVELWDISGHERY-K--------------------DCRSILYSQINGVIFVHDLSQRR--TKTS--------LQKW 128 (333)
Q Consensus 80 ~~~~~l~i~Dt~G~e~~-~--------------------~~~~~~~~~ad~vIlV~D~s~~~--S~~~--------l~~~ 128 (333)
+..+.+.+.|.+..... . .-....+.++|++|++-...... +..+ ++.+
T Consensus 53 ~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~ 132 (175)
T d7mdha1 53 DQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQ 132 (175)
T ss_dssp TCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHH
Confidence 12233555665552111 0 00123367899999987765432 2222 2445
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 129 AVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 129 ~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
...+.+++. .+.-+++|+|=+|.
T Consensus 133 ~~~i~~~a~------------~~~~vlvv~NPvd~ 155 (175)
T d7mdha1 133 GKALNAVAS------------KNVKVLVVGNPCNT 155 (175)
T ss_dssp HHHHHHHSC------------TTCEEEECSSSHHH
T ss_pred HHHHHhhCC------------CCcEEEEecCcHHH
Confidence 666666642 25667888887774
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.85 E-value=0.075 Score=42.49 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
-|+|.|++|+|||||.-.|....
T Consensus 16 gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 16 GVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHcC
Confidence 58999999999999999998653
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=90.75 E-value=0.064 Score=48.00 Aligned_cols=21 Identities=33% Similarity=0.697 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++++|++|||||-|..+|..
T Consensus 70 niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeCCCCccHHHHHHHHHh
Confidence 699999999999999999863
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.60 E-value=0.064 Score=45.91 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|+|.+|+|||||+..+++.
T Consensus 46 ~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 46 FLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999998754
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.58 E-value=0.062 Score=43.63 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
|+|-|..||||||+++.|..
T Consensus 5 IviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78889999999999998863
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.20 E-value=0.096 Score=45.70 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.4
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHH
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
....+=|+|.|.+|||||||.+.|.
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 3445789999999999999988885
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.12 E-value=0.052 Score=46.57 Aligned_cols=19 Identities=32% Similarity=0.686 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 019959 24 VLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~ 42 (333)
-+|+|+.|+|||+++.++.
T Consensus 27 nvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEEECCTTTCSTHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4789999999999999884
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.89 E-value=0.053 Score=44.65 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.|+|-|..||||||+++.|..
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.84 E-value=0.093 Score=41.94 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-|+|.|++|+|||+|.-.|...
T Consensus 17 gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 17 GVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 5899999999999999999865
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.82 E-value=0.076 Score=43.80 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-++|.|++|+|||+|...|+..
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999854
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.77 E-value=0.07 Score=43.64 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
-+.|.|++|+|||+|+..|+..
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999754
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.70 E-value=0.046 Score=47.98 Aligned_cols=20 Identities=45% Similarity=0.743 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
.|+++|++|+|||+|++++.
T Consensus 30 ~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 69999999999999999986
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.63 E-value=0.087 Score=43.27 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 019959 24 VLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~~ 44 (333)
+.|.|++|+|||.|++++++.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999854
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.63 E-value=0.078 Score=43.36 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 019959 24 VLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~ 42 (333)
|+|-|..||||||++..|.
T Consensus 6 I~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7778999999999888775
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=89.32 E-value=0.22 Score=37.93 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=13.4
Q ss_pred EEECCCCCCHHH-HHHHH
Q 019959 25 LVVGDSGVGKTS-LVNLI 41 (333)
Q Consensus 25 ~ivG~~~vGKSS-Ll~~l 41 (333)
+++|+-.+|||| |++++
T Consensus 6 ~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRL 23 (139)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHH
Confidence 468999999999 55554
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.12 E-value=0.11 Score=41.21 Aligned_cols=24 Identities=42% Similarity=0.682 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKGS 45 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~~ 45 (333)
.-|+|.|++|+|||||.-.|+...
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHcC
Confidence 368999999999999999888653
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=89.08 E-value=0.096 Score=46.74 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-+++.|++|+|||+|.+.+.+
T Consensus 156 ~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 156 YWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.07 E-value=0.096 Score=43.11 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=21.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+..--++|.|++|+|||+|+..++..
T Consensus 24 ~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 24 FKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 33446889999999999999999854
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.86 E-value=0.1 Score=42.61 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
=++|.|++|+|||+|+..++..
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4788999999999999999854
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.83 E-value=0.098 Score=46.57 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 019959 24 VLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~ 42 (333)
-+|+|+.|+|||+|+.+++
T Consensus 28 ~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4588999999999999984
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.69 E-value=0.17 Score=44.11 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
-.++++|++|||||.|+..+..
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHh
Confidence 3689999999999999999874
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.28 E-value=0.059 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
=|+|.|.+||||||+.++|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 499999999999999998864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.09 E-value=0.21 Score=42.93 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHH
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~ 42 (333)
...+=|.|-|.+|+|||||...+.
T Consensus 25 ~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 25 KCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEeECCCCCCHHHHHHHHH
Confidence 345789999999999999998764
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.02 E-value=0.12 Score=42.46 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-|+|=|.-||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999974
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.02 E-value=0.14 Score=41.96 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=21.8
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHcC
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+.---++|.|++|+|||+|...|+..
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 333445889999999999999999854
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.00 E-value=0.19 Score=40.73 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+-|+|.|..|+||||+.+.|...
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCcCCHHHHHHHHHHC
Confidence 55889999999999999988644
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.46 E-value=0.23 Score=40.03 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 019959 22 VRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
+-|+|.|..||||||+++.|...
T Consensus 3 ~iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
Confidence 56889999999999999988643
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.22 E-value=0.15 Score=41.29 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=17.9
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 019959 22 VRVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 22 ikI~ivG~~~vGKSSLl~~l~ 42 (333)
--++|.|++|+|||+|+..|+
T Consensus 27 ~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 27 RSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 357788999999999998775
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=87.09 E-value=0.15 Score=44.60 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
+++.|+||+|||.|++.+.+
T Consensus 126 ~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 45579999999999999974
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=86.87 E-value=0.16 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
=|+|.|++|+||||+++.++..
T Consensus 160 liLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 160 IILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHhhh
Confidence 5999999999999999999853
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=86.50 E-value=0.12 Score=45.50 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHcC
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
.+.++|+|=|.-||||||+++.|...
T Consensus 3 m~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 3 MGVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999754
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.42 E-value=0.22 Score=43.78 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~~ 44 (333)
..++|+|=|.-||||||+++.|...
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred ceEEEEEECCccCCHHHHHHHHHHH
Confidence 4579999999999999999999753
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=86.38 E-value=0.19 Score=42.24 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=19.9
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHHc
Q 019959 18 PTGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 18 ~~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++++ ++|.|.+|+|||+|+..+..
T Consensus 33 ~~G~l-~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 33 RGGEV-IMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp CTTCE-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCeE-EEEEeCCCCCHHHHHHHHHH
Confidence 34444 77999999999999988863
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.29 E-value=0.19 Score=41.61 Aligned_cols=21 Identities=48% Similarity=0.724 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++|.|++|+|||++++.+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478899999999999998863
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.23 E-value=0.18 Score=41.16 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 019959 24 VLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 24 I~ivG~~~vGKSSLl~~l~~ 43 (333)
|+|-|.-||||||+++.|..
T Consensus 6 I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 6 ILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999998863
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=85.88 E-value=0.68 Score=35.48 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=32.0
Q ss_pred hhccCCcEEEEEEECCCccc---H-------HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 102 ILYSQINGVIFVHDLSQRRT---K-------TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~S---~-------~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
..++++|++|+......... . .-++.+...+.+++. ++.-+++|.|-+|.
T Consensus 76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~------------~~~~vivvsNPvDv 135 (154)
T d1y7ta1 76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK------------KDVKVLVVGNPANT 135 (154)
T ss_dssp HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSC------------TTCEEEECSSSHHH
T ss_pred hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC------------CCcEEEEecCcHHH
Confidence 34789999999887654321 1 223557777777642 24556677887774
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=85.62 E-value=0.21 Score=43.81 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCCHHHHHHHHHc
Q 019959 20 GQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 20 ~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
..++|+|=|.-||||||+++.|..
T Consensus 3 ~~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 3 TLLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred CceEEEEECCcCCCHHHHHHHHHH
Confidence 346899999999999999998863
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=85.13 E-value=0.21 Score=41.77 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 019959 23 RVLVVGDSGVGKTSLVNLIV 42 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~ 42 (333)
-++|.|++|+|||+|+-.+.
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 36699999999999998876
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.00 E-value=0.21 Score=40.55 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-+++.|++|+|||+++..|..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998764
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=84.71 E-value=0.24 Score=41.50 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=50.0
Q ss_pred eEEEEEEeCCCchhhhh-hHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcE-EEEee
Q 019959 82 DFFVELWDISGHERYKD-CRSILYSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-VVIGN 159 (333)
Q Consensus 82 ~~~l~i~Dt~G~e~~~~-~~~~~~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~Pi-ivVgN 159 (333)
.+.+.+.||++.-.... ........||.++++.+. +..++..+...+..+..... ..++.+ -+|.|
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~-----------~~~~~~~~vv~N 182 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAK-----------SGGVRLGGIICN 182 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBT-----------TBBCEEEEEEEE
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhcc-----------ccceeccceEEe
Confidence 45688999986332211 222223458888887766 45566655555555544322 013333 47889
Q ss_pred CcCCCCccCCccCcccHHHHHHHHHHHcCC
Q 019959 160 KADVAAKEGTRGSSGNLVDAARQWVEKQGL 189 (333)
Q Consensus 160 K~Dl~~~~~r~v~~~~~~~~~~~~~~~~~~ 189 (333)
+.+.... .+..+++++.++.
T Consensus 183 ~~~~~~~----------~~~~~~~~~~~~~ 202 (269)
T d1cp2a_ 183 SRKVANE----------YELLDAFAKELGS 202 (269)
T ss_dssp CCSSSCC----------HHHHHHHHHHHTC
T ss_pred eecCCCc----------cchhhhhHhhcCC
Confidence 9886654 2557778888875
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.46 E-value=0.26 Score=42.38 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 019959 23 RVLVVGDSGVGKTSLVNLIVKG 44 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~~ 44 (333)
|++|+|++|+|||+|+..+..+
T Consensus 45 r~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 45 RGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred eeeEeCCCCCCHHHHHHHHHHH
Confidence 8999999999999999988754
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.43 E-value=1.7 Score=32.89 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=31.8
Q ss_pred hhccCCcEEEEEEECCCcc------cH----HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCC
Q 019959 102 ILYSQINGVIFVHDLSQRR------TK----TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 163 (333)
Q Consensus 102 ~~~~~ad~vIlV~D~s~~~------S~----~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl 163 (333)
..++++|+||+..-..... -+ .-++.+.+.+.+++ ++.-+++|.|=+|.
T Consensus 64 ~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-------------p~~iiivvtNPvD~ 122 (144)
T d1mlda1 64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-------------PDAMICIISNPVNS 122 (144)
T ss_dssp HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-------------TTSEEEECSSCHHH
T ss_pred HHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-------------CCeEEEEecCchhh
Confidence 3467899999986643221 11 12456777888875 36667888887774
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=83.83 E-value=0.28 Score=39.82 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=21.2
Q ss_pred CcceEEEEECCCCCCHHHHHHHHHc
Q 019959 19 TGQVRVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 19 ~~~ikI~ivG~~~vGKSSLl~~l~~ 43 (333)
+++--+++.|++++|||.|+..++.
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4445799999999999999998874
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=82.42 E-value=0.31 Score=43.67 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
.++|+|.+|+|||+++..++.
T Consensus 52 H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHHH
Confidence 489999999999999887763
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.47 E-value=1.1 Score=33.38 Aligned_cols=43 Identities=5% Similarity=0.018 Sum_probs=29.4
Q ss_pred ccCCcEEEEEEECCCcccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcEEEEeeCcCCCC
Q 019959 104 YSQINGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 165 (333)
Q Consensus 104 ~~~ad~vIlV~D~s~~~S~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~PiivVgNK~Dl~~ 165 (333)
+..+|+|++ ....-|+.+..+...+... +++|++.|-..|-..
T Consensus 71 ~~~~d~I~I----DEaQFf~dl~~~~~~~~~~---------------~~~Viv~GLd~Df~~ 113 (133)
T d1xbta1 71 ALGVAVIGI----DEGQFFPDIVEFCEAMANA---------------GKTVIVAALDGTFQR 113 (133)
T ss_dssp HHTCSEEEE----SSGGGCTTHHHHHHHHHHT---------------TCEEEEECCSBCTTS
T ss_pred hcccceEEe----ehhHHHHHHHHHHHHHHhc---------------CCcEEEEEecccccc
Confidence 456776543 3444466677777777665 678999999988654
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=80.67 E-value=0.31 Score=41.10 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHH-HHHH
Q 019959 24 VLVVGDSGVGKTSL-VNLI 41 (333)
Q Consensus 24 I~ivG~~~vGKSSL-l~~l 41 (333)
++|+|.+|+||||. ++++
T Consensus 17 ~lI~g~aGTGKTt~l~~rv 35 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNKI 35 (306)
T ss_dssp EEECCCTTSCHHHHHHHHH
T ss_pred EEEEeeCCccHHHHHHHHH
Confidence 68999999999975 4443
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.33 E-value=0.63 Score=40.26 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 019959 23 RVLVVGDSGVGKTSLVNLIVK 43 (333)
Q Consensus 23 kI~ivG~~~vGKSSLl~~l~~ 43 (333)
-++++|++|||||.|...+..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 578889999999999998874
|