Citrus Sinensis ID: 020021

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
Secondary Structure (PSIPRED)
cccccccccEEEEEEEcHHHcccEEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEccccccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEEccEEEEEEccccEEEEEEccccEEEEEcccccccccEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccccEEEEEcccccEEEEcccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccEEEEEEccHcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEcccccEEEEEccccEEEEEEcccccccEEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccEEccc
Coil and Loop (DISEMBL)
mvgsqseredKVSLELSEEILQSMEVGMsfrdyngrissmdfhksssylvtasddesirlYDVTAATCLKTinskkygvdlvcftshpttviysskngwdESLRLLSLHDNKYLRYFKGHHDRVVSLslcsskdcfisgsldrtVLLWDQRAEKCQGLLRvqgrpaaayddqGLVFAVAFGGYIrmfdarkyekgpfdifsvggdisdanvvkfsndGRLMLLTTMEGHIHVLDSFRgtllstynvkpvsrnstleasfspegmfvisgsgdgsvYAWSVRSGKEVaswmsfdteppvikwtpgslmfvtgsselsfwipdlsklgayvgrk
Flexible Loop (DISEMBL)
mvgsqseredkvsLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTviysskngwDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSselsfwipdlsklgayvgrk
Low Complexity Region (SEG)
MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
Disordered region (IsUnstruct)
*******************************DYN**I****F***SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK*****************************AWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYV***
Disordered Region (DISOPRED)
*******REDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA*****
Disordered Region (DISEMBL)
*************LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
Disordered Region (DISPRO)
MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q58E77	313	WD repeat-containing prot	N/A	no	0.927	0.984	0.410	2e-69
Q6GL39	313	WD repeat-containing prot	yes	no	0.927	0.984	0.400	1e-68
Q5ZMV7	313	WD repeat-containing prot	yes	no	0.927	0.984	0.410	1e-68
Q6NV31	313	WD repeat-containing prot	yes	no	0.927	0.984	0.403	9e-68
Q8BFQ4	313	WD repeat-containing prot	yes	no	0.927	0.984	0.403	2e-67
Q6UXN9	313	WD repeat-containing prot	yes	no	0.927	0.984	0.403	2e-67
Q640J6	313	WD repeat-containing prot	N/A	no	0.927	0.984	0.397	6e-67
Q9UT39	341	Uncharacterized WD repeat	yes	no	0.906	0.882	0.304	2e-34
O60137	357	Set1 complex component sw	no	no	0.822	0.764	0.315	1e-32
P36104	329	COMPASS component SWD2 OS	yes	no	0.858	0.866	0.313	4e-32

>sp|Q58E77|WD82B_XENLA WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2 SV=1

 Score =  263 bits (671), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/312 (41%), Positives = 202/312 (64%), Gaps = 4/312 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDNVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVVSLS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVSLSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGINSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  D   +   +KFSNDG+L+LL+T  G + ++D+F+G ++ T+     S+
Sbjct: 180 DKGPFATFKMQYDRTCEWTALKFSNDGKLILLSTNGGFLRLVDAFKGAVMHTFGGYNNSK 239

Query: 252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT 310
             TLEASF+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFAS 299

Query: 311 GSSELSFWIPDL 322
             S ++FW+P +
Sbjct: 300 ACSNMAFWLPTI 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.
Xenopus laevis (taxid: 8355)

>sp|Q6GL39|WDR82_XENTR WD repeat-containing protein 82 OS=Xenopus tropicalis GN=wdr82 PE=2 SV=1

 Score =  259 bits (663), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/312 (40%), Positives = 202/312 (64%), Gaps = 4/312 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDNVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  D   +   +KFSNDG+L+L++T  G + ++D+F+G ++ T+     S+
Sbjct: 180 DKGPFATFKMQYDRTCEWTALKFSNDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSK 239

Query: 252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT 310
             TLEA+F+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct: 240 AVTLEATFTPDSQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFTS 299

Query: 311 GSSELSFWIPDL 322
             S ++FW+P +
Sbjct: 300 ACSNMAFWLPTI 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZMV7|WDR82_CHICK WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1

 Score =  259 bits (663), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/312 (41%), Positives = 202/312 (64%), Gaps = 4/312 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  D   +   +KFSNDG+L+L++T  G I ++D+F+G +L T+     S+
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSK 239

Query: 252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT 310
             TLEASF+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFAS 299

Query: 311 GSSELSFWIPDL 322
             S ++FW+P +
Sbjct: 300 ACSNMAFWLPTI 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Gallus gallus (taxid: 9031)

>sp|Q6NV31|WDR82_DANRE WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1

 Score =  257 bits (656), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 126/312 (40%), Positives = 202/312 (64%), Gaps = 4/312 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDSVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH+ RVV+LS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  +   +   +KFSNDG+L+L++T  G + VLD+F+G +L ++     S+
Sbjct: 180 DKGPFATFKLQYERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSK 239

Query: 252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT 310
              LEASF+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct: 240 GVILEASFTPDSQFIMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFAS 299

Query: 311 GSSELSFWIPDL 322
             S ++FW+P +
Sbjct: 300 ACSNMAFWLPTI 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Danio rerio (taxid: 7955)

>sp|Q8BFQ4|WDR82_MOUSE WD repeat-containing protein 82 OS=Mus musculus GN=Wdr82 PE=1 SV=1

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/312 (40%), Positives = 201/312 (64%), Gaps = 4/312 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  D   +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query: 252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT 310
             TLEASF+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299

Query: 311 GSSELSFWIPDL 322
             S ++FW+P +
Sbjct: 300 ACSNMAFWLPTI 311

Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase. Possible role in telomere length maintenance and in mRNA processing.

Mus musculus (taxid: 10090)

>sp|Q6UXN9|WDR82_HUMAN WD repeat-containing protein 82 OS=Homo sapiens GN=WDR82 PE=1 SV=1

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/312 (40%), Positives = 201/312 (64%), Gaps = 4/312 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  D   +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query: 252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT 310
             TLEASF+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299

Query: 311 GSSELSFWIPDL 322
             S ++FW+P +
Sbjct: 300 ACSNMAFWLPTI 311

Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase.

Homo sapiens (taxid: 9606)

>sp|Q640J6|WD82A_XENLA WD repeat-containing protein 82-A OS=Xenopus laevis GN=wdr82-a PE=2 SV=1

 Score =  254 bits (649), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 124/312 (39%), Positives = 200/312 (64%), Gaps = 4/312 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDGVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FIS SLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISASLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  D   +   +KFS DG+L+L++T  G + ++D+F+G ++ T+     S+
Sbjct: 180 DKGPFATFKMQYDRTCEWTSLKFSQDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSK 239

Query: 252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT 310
             TLEASF+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct: 240 AVTLEASFTPDSQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFAS 299

Query: 311 GSSELSFWIPDL 322
             S ++FW+P +
Sbjct: 300 ACSNMAFWLPTI 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Xenopus laevis (taxid: 8355)

>sp|Q9UT39|YIQ4_SCHPO Uncharacterized WD repeat-containing protein C824.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.04 PE=4 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 171/332 (51%), Gaps = 31/332 (9%)

Query: 20  ILQSMEVGMSFRDYN--GRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKK 76
           IL S++   SFRD +    I+S+D+  S  Y+  T S D+++++YD      + TI   +
Sbjct: 5   ILSSLKPAQSFRDNSLGSFINSIDYSDSGEYVATTCSADDTVQIYDALDPKQVHTITCFE 64

Query: 77  YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
            G+++  FT H   ++ S+  G ++ ++ +S++DNK + YF GH D V S+ +   +D F
Sbjct: 65  TGIEVARFTHHDHNLLLSTTKG-NKDIQYVSIYDNKRISYFSGHTDIVSSIEVSPIEDQF 123

Query: 137 ISGSLDRTVLLWD-QRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF--DARKYE 193
           +S + D+T+ LW   ++ +C G L +      AYD  GLVFAVA     R+F  D R Y 
Sbjct: 124 VSTANDKTLKLWKMNQSSRCLGNLDLPSLGIPAYDPTGLVFAVACHSLSRIFLYDVRNYG 183

Query: 194 KGPFDIFSVGGD-----------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 242
             PF  F++              + +   ++FSNDG+ +LL+T     ++LD+F G +LS
Sbjct: 184 SDPFSTFTIDDSRYLSRFSFPPMMPEWKHMEFSNDGKCILLSTRANVHYILDAFSGDVLS 243

Query: 243 ---TYNVKPVSRN-STLEASFSPEGMFVISGSGDGSVYAWSVR-----SGKEVASWMSFD 293
               +   P S N      +F P+G FVI  + D ++  W++R      GK         
Sbjct: 244 RLEDFQELPFSNNFHGGSTTFVPQGNFVIGSADDRTLNVWNLRHTFHHKGKTRPPEHRIV 303

Query: 294 TE----PPVIKWTPGSLMFVTGSSELSFWIPD 321
           ++    P ++K+ P     +T  S+L FW+P+
Sbjct: 304 SQSIINPGLVKYNPRYDQLLTAGSQLVFWLPE 335

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O60137|SWD2_SCHPO Set1 complex component swd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swd2 PE=3 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 155/292 (53%), Gaps = 19/292 (6%)

Query: 12  VSLELSEEILQSMEVGMSFRDYN--GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL 69
            ++ ++ ++L SM+     ++ N  G I+S+ F  S    + +  D++++LY+  +   +
Sbjct: 2   TTVSITFDLLSSMQPRKWLKNQNFVGEITSLSFDDSGELCLASCTDDTLQLYNCISGKFV 61

Query: 70  KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL 129
           K++ SKKYG  L  FT H  ++I++S    D ++R L +  N+YLRYF GH   V S+ +
Sbjct: 62  KSLASKKYGAHLGRFTHHSNSLIHASTKE-DNTVRYLDVVTNRYLRYFPGHKQTVTSIDV 120

Query: 130 CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA-VAFGGY----- 183
             + + F+S SLD T+ LWD R+  CQGLL V     AA+D  GL+FA V+   Y     
Sbjct: 121 SPADETFLSASLDNTIRLWDLRSPNCQGLLNVSSPVVAAFDATGLIFASVSERKYKISLY 180

Query: 184 -IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL- 241
            I+ FDAR ++  P         I++   V+FS DG+ +LLTT     +V+D++ G+ L 
Sbjct: 181 NIKSFDARPFQDIPLTFLPPHVRIAN---VEFSTDGKYLLLTTGNDFHYVIDAYSGSELL 237

Query: 242 ---STYNVKPVSRNSTLEAS--FSPEGMFVISGSGDGSVYAWSVRSGKEVAS 288
              S  + K    N T  AS   SP+  F+ +   +  +  + +   K+  +
Sbjct: 238 RVPSKVSTKTQDGNLTYYASACMSPDSKFLFTSYDNEHLCMYQLPELKQTVN 289

The Set1 complex specifically methylates 'Lys-4' of histone H3.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P36104|SWD2_YEAST COMPASS component SWD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD2 PE=1 SV=1

 Score =  139 bits (349), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 150/303 (49%), Gaps = 18/303 (5%)

Query: 35  GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS 94
           G ++S++F  +  +L+T+S +++++LY  T    L TI SKKYG     FT      IYS
Sbjct: 28  GPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKYGCHSAIFTHAQNECIYS 87

Query: 95  SK-NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 153
           S    +D  ++ L+L  N+YLRYF GH   V  L +    D F+S S D +V LWD +  
Sbjct: 88  STMKNFD--IKYLNLETNQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKIS 145

Query: 154 KCQGLLRVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVG-GDISDAN 210
           K Q ++        AYD  GLVFA+       I +++ +K ++GPF I  +     S  N
Sbjct: 146 KPQVIIPSLVPNCIAYDPSGLVFALGNPENFEIGLYNLKKIQEGPFLIIKINDATFSQWN 205

Query: 211 VVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLE---ASFSPEGMFV 266
            ++FSN+G+ +L+ +  G   + D+F G  L      +       L+   A F+P+G FV
Sbjct: 206 KLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAFPMREFLDSGSACFTPDGEFV 265

Query: 267 ISGSGDGSVYAWS--------VRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFW 318
           +    DG +  W+        V   +     +S +T P  I + P   MFVT    + F+
Sbjct: 266 LGTDYDGRIAIWNHSDSISNKVLRPQGFIPCVSHETCPRSIAFNPKYSMFVTADETVDFY 325

Query: 319 IPD 321
           + D
Sbjct: 326 VYD 328

Involved in mediating RNA polymerase II termination. Component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. Component of the APT complex, which may be involved in polyadenylation-independent transcript 3'-end formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
297735019	522	unnamed protein product [Vitis vinifera]	0.987	0.628	0.920	0.0
449434162	332	PREDICTED: WD repeat-containing protein	1.0	1.0	0.909	1e-179
225431149	334	PREDICTED: WD repeat-containing protein	0.987	0.982	0.920	1e-179
449491362	332	PREDICTED: WD repeat-containing protein	1.0	1.0	0.906	1e-179
147857700	328	hypothetical protein VITISV_020464 [Viti	0.984	0.996	0.917	1e-178
255579793	332	COMPASS component SWD2, putative [Ricinu	1.0	1.0	0.891	1e-176
356563997	334	PREDICTED: WD repeat-containing protein	1.0	0.994	0.898	1e-175
356554143	334	PREDICTED: WD repeat-containing protein	1.0	0.994	0.898	1e-175
217074372	334	unknown [Medicago truncatula] gi|3885018	1.0	0.994	0.856	1e-167
224133718	307	predicted protein [Populus trichocarpa]	0.924	1.0	0.899	1e-163

>gi|297735019|emb|CBI17381.3| unnamed protein product [Vitis vinifera]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/328 (92%), Positives = 316/328 (96%)

Query: 5   QSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT 64
           QSEREDKV+LEL+EEI QSMEVGM+FRDY+GRISSMDFH++SSYLVTASDDESIRLYDV 
Sbjct: 195 QSEREDKVALELTEEIFQSMEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVA 254

Query: 65  AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 124
             TCLKTINSKKYGVDLVCFTS PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV
Sbjct: 255 TGTCLKTINSKKYGVDLVCFTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 314

Query: 125 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI 184
           VSLSLCS K+CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA AYDDQGLVFA+AFGGY+
Sbjct: 315 VSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYV 374

Query: 185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
           R+FDARKY+KGPF+IFSVGGDISDANVVKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTY
Sbjct: 375 RLFDARKYDKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTY 434

Query: 245 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 304
           NVKPVS  STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS +TEPPVIKW PG
Sbjct: 435 NVKPVSSTSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPG 494

Query: 305 SLMFVTGSSELSFWIPDLSKLGAYVGRK 332
           SLMFVTGSSELSFWIPDLSKLGAY GRK
Sbjct: 495 SLMFVTGSSELSFWIPDLSKLGAYAGRK 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434162|ref|XP_004134865.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 302/332 (90%), Positives = 320/332 (96%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL 60
           M GSQSERE+KVSLEL+EEILQSMEVGM+FRDYNGRISSMDFHK+SSYLVTASDDESIRL
Sbjct: 1   MGGSQSEREEKVSLELTEEILQSMEVGMTFRDYNGRISSMDFHKTSSYLVTASDDESIRL 60

Query: 61  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120
           YDV +ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL+DNKYLRYF+GH
Sbjct: 61  YDVASATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFRGH 120

Query: 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
           HDRVVSLSLC+ K+CFISGSLDRTVLLWDQRAEKCQGLLRVQG+PA AYD+QG+VFA+AF
Sbjct: 121 HDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLRVQGKPATAYDEQGVVFAIAF 180

Query: 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240
           GGYIRMFDARKYEKGPFDIFSVG D+SDAN+VKFSNDGRLMLLTT +GHIHVLDSFRGTL
Sbjct: 181 GGYIRMFDARKYEKGPFDIFSVGEDLSDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTL 240

Query: 241 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK 300
           LSTYNVKP+SRN TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS + EPPVIK
Sbjct: 241 LSTYNVKPISRNLTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIK 300

Query: 301 WTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK 332
           W PGSLMF TGSSELSFWIPDLSKLGAYV RK
Sbjct: 301 WAPGSLMFATGSSELSFWIPDLSKLGAYVDRK 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431149|ref|XP_002268226.1| PREDICTED: WD repeat-containing protein 82-B-like [Vitis vinifera]

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 302/328 (92%), Positives = 316/328 (96%)

Query: 5   QSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT 64
           QSEREDKV+LEL+EEI QSMEVGM+FRDY+GRISSMDFH++SSYLVTASDDESIRLYDV 
Sbjct: 7   QSEREDKVALELTEEIFQSMEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVA 66

Query: 65  AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 124
             TCLKTINSKKYGVDLVCFTS PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV
Sbjct: 67  TGTCLKTINSKKYGVDLVCFTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 126

Query: 125 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI 184
           VSLSLCS K+CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA AYDDQGLVFA+AFGGY+
Sbjct: 127 VSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYV 186

Query: 185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
           R+FDARKY+KGPF+IFSVGGDISDANVVKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTY
Sbjct: 187 RLFDARKYDKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTY 246

Query: 245 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 304
           NVKPVS  STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS +TEPPVIKW PG
Sbjct: 247 NVKPVSSTSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPG 306

Query: 305 SLMFVTGSSELSFWIPDLSKLGAYVGRK 332
           SLMFVTGSSELSFWIPDLSKLGAY GRK
Sbjct: 307 SLMFVTGSSELSFWIPDLSKLGAYAGRK 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491362|ref|XP_004158872.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  632 bits (1629), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 301/332 (90%), Positives = 320/332 (96%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL 60
           M GSQSERE+KVSLEL+EEILQSMEVGM+FRDYNGRISSMDFH++SSYLVTASDDESIRL
Sbjct: 1   MGGSQSEREEKVSLELTEEILQSMEVGMTFRDYNGRISSMDFHRTSSYLVTASDDESIRL 60

Query: 61  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120
           YDV +ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL+DNKYLRYF+GH
Sbjct: 61  YDVASATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFRGH 120

Query: 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
           HDRVVSLSLC+ K+CFISGSLDRTVLLWDQRAEKCQGLLRVQG+PA AYD+QG+VFA+AF
Sbjct: 121 HDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLRVQGKPATAYDEQGVVFAIAF 180

Query: 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240
           GGYIRMFDARKYEKGPFDIFSVG D+SDAN+VKFSNDGRLMLLTT +GHIHVLDSFRGTL
Sbjct: 181 GGYIRMFDARKYEKGPFDIFSVGEDLSDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTL 240

Query: 241 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK 300
           LSTYNVKP+SRN TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS + EPPVIK
Sbjct: 241 LSTYNVKPISRNLTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIK 300

Query: 301 WTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK 332
           W PGSLMF TGSSELSFWIPDLSKLGAYV RK
Sbjct: 301 WAPGSLMFATGSSELSFWIPDLSKLGAYVDRK 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857700|emb|CAN80813.1| hypothetical protein VITISV_020464 [Vitis vinifera]

 Score =  629 bits (1621), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 300/327 (91%), Positives = 315/327 (96%)

Query: 6   SEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA 65
           +EREDKV+LEL+EEI QSMEVGM+FRDY+GRISSMDFH++SSYLVTASDDESIRLYDV  
Sbjct: 2   AEREDKVALELTEEIFQSMEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVAT 61

Query: 66  ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125
            TCLKTINSKKYGVDLVCFTS PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV
Sbjct: 62  GTCLKTINSKKYGVDLVCFTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 121

Query: 126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR 185
           SLSLCS K+CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA AYDDQGLVFA+AFGGY+R
Sbjct: 122 SLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYVR 181

Query: 186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245
           +FDARKY+KGPF+IFSVGGDISDANVVKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTYN
Sbjct: 182 LFDARKYDKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYN 241

Query: 246 VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS 305
           VKPVS  STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS +TEPPVIKW PGS
Sbjct: 242 VKPVSSTSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPGS 301

Query: 306 LMFVTGSSELSFWIPDLSKLGAYVGRK 332
           LMFVTGSSELSFWIPDLSKLGAY GRK
Sbjct: 302 LMFVTGSSELSFWIPDLSKLGAYAGRK 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579793|ref|XP_002530734.1| COMPASS component SWD2, putative [Ricinus communis] gi|223529698|gb|EEF31640.1| COMPASS component SWD2, putative [Ricinus communis]

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/332 (89%), Positives = 318/332 (95%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL 60
           MVG Q ERE+KVSLEL+EEILQSME+GM FRDYNGRISSMDFHK+SSYLVTASDDESIRL
Sbjct: 1   MVGVQPEREEKVSLELTEEILQSMEIGMVFRDYNGRISSMDFHKTSSYLVTASDDESIRL 60

Query: 61  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120
           YDV++A CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL+DNKYLRYFKGH
Sbjct: 61  YDVSSAACLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFKGH 120

Query: 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
           HDRVVSLSLC+ K+CFISGSLDRTVLLWDQRAEKCQGLL VQGRPA AYDDQGLVF +AF
Sbjct: 121 HDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLHVQGRPATAYDDQGLVFTIAF 180

Query: 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240
           GG+IRMFD+RKYEKGPF+IFSVGGD+SDA+VVKFSNDGRLMLLTT++GHIHVLDSFRGTL
Sbjct: 181 GGFIRMFDSRKYEKGPFEIFSVGGDVSDAHVVKFSNDGRLMLLTTVDGHIHVLDSFRGTL 240

Query: 241 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK 300
           LSTYNVKPV  NSTLEASFSPEGMFV+SGSGDGSV+AWSVRSGKEVASWM+++TEP VIK
Sbjct: 241 LSTYNVKPVLTNSTLEASFSPEGMFVVSGSGDGSVHAWSVRSGKEVASWMTYETEPHVIK 300

Query: 301 WTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK 332
           W PGSLMF TGSSELSFWIPDLSKL AYVGRK
Sbjct: 301 WAPGSLMFATGSSELSFWIPDLSKLAAYVGRK 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563997|ref|XP_003550243.1| PREDICTED: WD repeat-containing protein 82-B-like [Glycine max]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/334 (89%), Positives = 316/334 (94%), Gaps = 2/334 (0%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL 60
           M G+Q ERE+KVSLELSEEILQSMEVGMSF+DYNGRISS+DFH++SSYLVTASDDESIRL
Sbjct: 1   MGGTQVEREEKVSLELSEEILQSMEVGMSFKDYNGRISSLDFHRASSYLVTASDDESIRL 60

Query: 61  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120
           YDVT  TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
Sbjct: 61  YDVTGGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120

Query: 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
           HDRVVSLSLCS KDCFISGSLDRTVLLWDQRAEKCQGLL VQGRPA +YDD GLVFA+AF
Sbjct: 121 HDRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDPGLVFAIAF 180

Query: 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240
           GGYIRMFDARKYEKGPF+IFSVGGDISDANVVKFSNDGRLMLLTT +GHIHVLD+FRGTL
Sbjct: 181 GGYIRMFDARKYEKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTADGHIHVLDTFRGTL 240

Query: 241 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPV 298
           LSTYNV PVS NSTLEASFSPEGMF+ISGSG+GS+YAWSVRSGKEVASW S   DT PPV
Sbjct: 241 LSTYNVTPVSCNSTLEASFSPEGMFIISGSGEGSIYAWSVRSGKEVASWRSATSDTGPPV 300

Query: 299 IKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK 332
           IKW PGSLMF TGSSELSFW+PDLSKLG+YVGRK
Sbjct: 301 IKWAPGSLMFATGSSELSFWVPDLSKLGSYVGRK 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554143|ref|XP_003545408.1| PREDICTED: WD repeat-containing protein 82-B-like [Glycine max]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/334 (89%), Positives = 316/334 (94%), Gaps = 2/334 (0%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL 60
           M G+Q ERE+KVSLEL EEILQSMEVGMSF+DYNGRISS+DFH++S+YLVTASDDESIRL
Sbjct: 1   MGGTQVEREEKVSLELCEEILQSMEVGMSFKDYNGRISSLDFHRASNYLVTASDDESIRL 60

Query: 61  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120
           YDVT+ TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
Sbjct: 61  YDVTSGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120

Query: 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
           HDRVVSLSLCS KDCFISGSLDRTVLLWDQRAEKCQGLL VQGRPA +YDDQGLVFA+AF
Sbjct: 121 HDRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDQGLVFAIAF 180

Query: 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240
           GGYIRMFDARKYEKGPF+IFSVGGDISDANVVKFSNDGRLMLLTT +GHIHVLDSFRGTL
Sbjct: 181 GGYIRMFDARKYEKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTADGHIHVLDSFRGTL 240

Query: 241 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPV 298
           LSTY V P+S NSTLEASFSPEGMFVISGSGDGS+YAWSVRSGKEVASW S   DT PPV
Sbjct: 241 LSTYIVTPISCNSTLEASFSPEGMFVISGSGDGSIYAWSVRSGKEVASWRSATSDTGPPV 300

Query: 299 IKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK 332
           IKW PGSLMF TGSSELSFW+PDLSKLG+YVGRK
Sbjct: 301 IKWAPGSLMFATGSSELSFWVPDLSKLGSYVGRK 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074372|gb|ACJ85546.1| unknown [Medicago truncatula] gi|388501886|gb|AFK39009.1| unknown [Medicago truncatula]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 286/334 (85%), Positives = 308/334 (92%), Gaps = 2/334 (0%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL 60
           M G+  E+E+KVSL+LSEEIL SMEVGMSF+DYNGRISSMDFH++SSYLVTASDDESIRL
Sbjct: 1   MGGTPGEKEEKVSLDLSEEILLSMEVGMSFKDYNGRISSMDFHRASSYLVTASDDESIRL 60

Query: 61  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120
           YDV A T LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
Sbjct: 61  YDVAAGTSLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120

Query: 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
           HDRVVSLSLC  KDCFISGSLDRTVLLWDQRAEKCQGLL VQGRPA +YDDQGLVFA+AF
Sbjct: 121 HDRVVSLSLCPRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDQGLVFAIAF 180

Query: 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240
           GGYIRMFDAR YEKGPF++FSVGGD+SDANVVKFSNDGRL+L+TT +GHIHVLDSFRGTL
Sbjct: 181 GGYIRMFDARMYEKGPFELFSVGGDVSDANVVKFSNDGRLLLVTTTDGHIHVLDSFRGTL 240

Query: 241 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPV 298
           L  YNV PVS NSTLEASFSP+GMFVIS SGDGS+YAWSVRSGKEVASW S   D  PPV
Sbjct: 241 LFAYNVTPVSCNSTLEASFSPDGMFVISSSGDGSIYAWSVRSGKEVASWRSATSDIGPPV 300

Query: 299 IKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK 332
           +KW PGSLMF TGSSELSFW+PDLSK+GA+VG+K
Sbjct: 301 VKWAPGSLMFATGSSELSFWVPDLSKIGAFVGKK 334

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133718|ref|XP_002327663.1| predicted protein [Populus trichocarpa] gi|222836748|gb|EEE75141.1| predicted protein [Populus trichocarpa]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/307 (89%), Positives = 292/307 (95%)

Query: 15  ELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS 74
           EL+EEILQSME GM FRDYNGRISSMDFHK+SSYLVTASDDESIRLYDV  A CLK INS
Sbjct: 1   ELTEEILQSMETGMVFRDYNGRISSMDFHKTSSYLVTASDDESIRLYDVAGAACLKAINS 60

Query: 75  KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD 134
           KKYGVDLVCFTS PTTV+YSSKNGWDESLRLLSL+DNKYLRYFKGHHDRVVSLSLCS K+
Sbjct: 61  KKYGVDLVCFTSDPTTVLYSSKNGWDESLRLLSLNDNKYLRYFKGHHDRVVSLSLCSRKE 120

Query: 135 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEK 194
           CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG+VFA+AFGGYIRMFD+RKYEK
Sbjct: 121 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGIVFAIAFGGYIRMFDSRKYEK 180

Query: 195 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 254
           GPFDIFSVGGD+SDAN VKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTYNVKPVS NST
Sbjct: 181 GPFDIFSVGGDVSDANAVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYNVKPVSINST 240

Query: 255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314
           LEASFSPEG FV+SGSGDG V+AWSVRSGKEVASW++++TEP VIKW PGSLMF TGSSE
Sbjct: 241 LEASFSPEGKFVVSGSGDGRVHAWSVRSGKEVASWVTYETEPHVIKWAPGSLMFATGSSE 300

Query: 315 LSFWIPD 321
           LSFWIPD
Sbjct: 301 LSFWIPD 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2154996	331	AT5G66240 "AT5G66240" [Arabido	0.984	0.987	0.837	1.3e-148
TAIR|locus:2222612	330	AT5G14530 "AT5G14530" [Arabido	0.921	0.927	0.495	5.8e-82
DICTYBASE|DDB_G0278945	319	DDB_G0278945 "WD repeat-contai	0.948	0.987	0.471	1.1e-76
UNIPROTKB|Q5ZMV7	313	WDR82 "WD repeat-containing pr	0.927	0.984	0.410	2.5e-65
UNIPROTKB|E2RGF2	313	WDR82 "Uncharacterized protein	0.927	0.984	0.403	1.8e-64
UNIPROTKB|Q6UXN9	313	WDR82 "WD repeat-containing pr	0.927	0.984	0.403	1.8e-64
UNIPROTKB|F2Z5U3	313	WDR82 "Uncharacterized protein	0.927	0.984	0.403	1.8e-64
MGI|MGI:1924555	313	Wdr82 "WD repeat domain contai	0.927	0.984	0.403	1.8e-64
FB|FBgn0032030	317	Wdr82 [Drosophila melanogaster	0.924	0.968	0.402	1.2e-63
ZFIN|ZDB-GENE-030131-333	600	wdr82 "WD repeat domain contai	0.906	0.501	0.403	6.2e-62

TAIR|locus:2154996 AT5G66240 "AT5G66240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1451 (515.8 bits), Expect = 1.3e-148, P = 1.3e-148
 Identities = 274/327 (83%), Positives = 302/327 (92%)

Query:     6 SEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA 65
             +ERED+VSLELSEEI+QSME G  FRDYN RISS+DFHK+S+ +VTASDD+SIRLYDV +
Sbjct:     5 TEREDRVSLELSEEIIQSMEPGAVFRDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVAS 64

Query:    66 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125
             ATCLKTINSKKYGVDLVCFTSHPTTVIYSS+NGWD+SLRLLSLHDNKYLRYFKGHHDRVV
Sbjct:    65 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVV 124

Query:   126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR 185
             SLSLCS  +CFISGSLDRTVLLWDQR EKCQGLLRVQGRPAAAYDDQGL+FA+AFGGYIR
Sbjct:   125 SLSLCSGGECFISGSLDRTVLLWDQRVEKCQGLLRVQGRPAAAYDDQGLIFAIAFGGYIR 184

Query:   186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245
             MFDAR YEKGPF+IFSVGGD+S+ANVVKFSNDGRLMLLTTM+G IHVLDSFRGTLLST++
Sbjct:   185 MFDARMYEKGPFEIFSVGGDLSEANVVKFSNDGRLMLLTTMDGFIHVLDSFRGTLLSTFS 244

Query:   246 VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS 305
             VKPV+  STL+A+FSPEGMFV+SGSGDGS +AW VRSGK+V SWM   +EPPVIKW PGS
Sbjct:   245 VKPVAGESTLDAAFSPEGMFVVSGSGDGSTHAWGVRSGKQVHSWMGLGSEPPVIKWGPGS 304

Query:   306 LMFVTGSSELSFWIPDLSKLGAYVGRK 332
              MFVTGSSEL+F IPDLSKL AY  RK
Sbjct:   305 PMFVTGSSELAFVIPDLSKLPAYAIRK 331

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2222612 AT5G14530 "AT5G14530" [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 154/311 (49%), Positives = 222/311 (71%)

Query:    15 ELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS 74
             EL + +++ M +G  F D+ G+I S+ FH++   LVT+S+D+S+RL+D+  A  LK    
Sbjct:     5 ELDDGLVRRMAMGAVFSDFGGKIHSVGFHRTDDLLVTSSEDDSLRLFDIANAKQLKITYH 64

Query:    75 KKYGVDLVCFTSHPTTVIYSSKNGWD---ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS 131
             KK+G D VCFT HP+++I SS+   +   ESLR LS++DN+ LRYFKGH DRVVSL +  
Sbjct:    65 KKHGTDRVCFTHHPSSLICSSRYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSLCMSP 124

Query:   132 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDAR 190
               D F+SGSLDR+V LWD R   CQG+L ++GRPA AYD QGLVFA+A  GG +++FD+R
Sbjct:   125 INDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKLFDSR 184

Query:   191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS 250
              Y+KGPFD F VGGD ++ N +KFSNDG+ MLLTT   +I+VLD++RG     ++++P S
Sbjct:   185 CYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYRGEKKCGFSLEP-S 243

Query:   251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT 310
             + + +EA+F+P+G +V+SGSGDG+++AW++ +  EVA W +       +KW P   MFV 
Sbjct:   244 QGTPIEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNIGVVSCLKWAPRRAMFVA 303

Query:   311 GSSELSFWIPD 321
              S+ L+FWIP+
Sbjct:   304 ASTVLTFWIPN 314

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

DICTYBASE|DDB_G0278945 DDB_G0278945 "WD repeat-containing protein 82" [Dictyostelium discoideum (taxid:44689)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 150/318 (47%), Positives = 210/318 (66%)

Query:    11 KVSLELSEEILQSMEVGMSFRDYNGR-ISSMDFHKSSSYLVTASDDESIRLYDVTAATCL 69
             K +L L++ ++Q+M +G   +D N   I+SMDF+K  S L+TASDDESI LY++      
Sbjct:     2 KSTLRLTDNVVQNMGIGKLHKDDNSSVINSMDFNKDGSLLITASDDESIHLYNIDTGELQ 61

Query:    70 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL 129
             KT+NSKKYGVDL+ FT +  ++I +SKN WDESLR LSLHDNKYL+YFKGH ++VVS+S+
Sbjct:    62 KTLNSKKYGVDLIKFTHNNNSIICASKNSWDESLRYLSLHDNKYLKYFKGHRNKVVSISM 121

Query:   130 CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG-GYIRMFD 188
                 D F+SGSLD T+ +WD R   CQGLLR  GRPA ++D QG++FA A     I+++D
Sbjct:   122 SPINDMFLSGSLDDTIRMWDLRTNVCQGLLRRNGRPAVSFDPQGIIFATAVSVNTIKLYD 181

Query:   189 ARKYEKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK 247
              R Y+KGPF  FS+   I  +   +KF+ DG+ +LL+T    I ++DSF G +   Y   
Sbjct:   182 LRNYDKGPFSSFSIDHPIPVEWTSMKFTADGKYILLSTKTNIIFLIDSFTGEVKQRYTSF 241

Query:   248 PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLM 307
                  S +E+SFSP+  +V+SGS DG+V+ W   +G+EVA W    +    ++W P S+M
Sbjct:   242 KNDNGSVIESSFSPDAQYVLSGSEDGTVHIWKTLTGEEVAVWGGHSSTVGRVQWNPRSMM 301

Query:   308 FVTGSSELSFWIPDLSKL 325
               T  S L+FWIP+ S L
Sbjct:   302 AATACSNLAFWIPNDSVL 319

GO:0030587 "sorocarp development" evidence=IMP

UNIPROTKB|Q5ZMV7 WDR82 "WD repeat-containing protein 82" [Gallus gallus (taxid:9031)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 128/312 (41%), Positives = 203/312 (65%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  D + +   +KFSNDG+L+L++T  G I ++D+F+G +L T+     S+
Sbjct:   180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSK 239

Query:   252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT 310
               TLEASF+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct:   240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFAS 299

Query:   311 GSSELSFWIPDL 322
               S ++FW+P +
Sbjct:   300 ACSNMAFWLPTI 311

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2RGF2 WDR82 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 126/312 (40%), Positives = 202/312 (64%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct:   180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query:   252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT 310
               TLEASF+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct:   240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299

Query:   311 GSSELSFWIPDL 322
               S ++FW+P +
Sbjct:   300 ACSNMAFWLPTI 311

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

UNIPROTKB|Q6UXN9 WDR82 "WD repeat-containing protein 82" [Homo sapiens (taxid:9606)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 126/312 (40%), Positives = 202/312 (64%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct:   180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query:   252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT 310
               TLEASF+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct:   240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299

Query:   311 GSSELSFWIPDL 322
               S ++FW+P +
Sbjct:   300 ACSNMAFWLPTI 311

GO:0003682 "chromatin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0000785 "chromatin" evidence=IDA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

UNIPROTKB|F2Z5U3 WDR82 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 126/312 (40%), Positives = 202/312 (64%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct:   180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query:   252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT 310
               TLEASF+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct:   240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299

Query:   311 GSSELSFWIPDL 322
               S ++FW+P +
Sbjct:   300 ACSNMAFWLPTI 311

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

MGI|MGI:1924555 Wdr82 "WD repeat domain containing 82" [Mus musculus (taxid:10090)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 126/312 (40%), Positives = 202/312 (64%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct:   180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query:   252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT 310
               TLEASF+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct:   240 AVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFAS 299

Query:   311 GSSELSFWIPDL 322
               S ++FW+P +
Sbjct:   300 ACSNMAFWLPTI 311

GO:0000785 "chromatin" evidence=ISO

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO;IMP

GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO

FB|FBgn0032030 Wdr82 [Drosophila melanogaster (taxid:7227)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 126/313 (40%), Positives = 201/313 (64%)

Query:    12 VSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT 71
             + ++L + +++S +V   FR+   +I+++DF  +  +L++ S+D+ I +YD    T  +T
Sbjct:     1 MKIKLIDSVVRSFKVAKIFRENTDKINAIDFAPNGEHLISCSEDDQIVIYDCEKGTQSRT 60

Query:    72 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS 131
             +NSKKYGVDL+ FT    T I+SS    D+++R LSLHDNKYLRYF GH  +V+SL +  
Sbjct:    61 VNSKKYGVDLIHFTHANNTAIHSSTKV-DDTIRYLSLHDNKYLRYFPGHTKKVISLCISP 119

Query:   132 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGY-IRMFDAR 190
              +D F+SGSLD+T+ LWD R+  CQGL+ + GRP AAYD +GL+FA       I+++D R
Sbjct:   120 VEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSGRPIAAYDPEGLIFAAGVNSESIKLYDLR 179

Query:   191 KYEKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 249
              ++KGPF  F +  +   D   +KFS DG+ +L++T    I ++D+F GT L T+   P 
Sbjct:   180 SFDKGPFVTFKLNQEKECDWTGLKFSRDGKTILISTNGSVIRLVDAFHGTPLQTFTGYPN 239

Query:   250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLM 307
             ++   +EASFSP+  F+ SGS DG V+ W+  +G +V S ++ D   PV  +++ P  +M
Sbjct:   240 NKGIPIEASFSPDSQFIFSGSTDGRVHIWNADTGNKV-SVLNGDHPGPVQCVQFNPKYMM 298

Query:   308 FVTGSSELSFWIP 320
               +  + ++FW+P
Sbjct:   299 LASACTNMAFWLP 311

GO:0008352 "katanin complex" evidence=ISS

GO:0051013 "microtubule severing" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0080182 "histone H3-K4 trimethylation" evidence=IMP

GO:0035097 "histone methyltransferase complex" evidence=IDA

ZFIN|ZDB-GENE-030131-333 wdr82 "WD repeat domain containing 82" [Danio rerio (taxid:7955)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 123/305 (40%), Positives = 197/305 (64%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH+ RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  + + +   +KFSNDG+L+L++T  G + VLD+F+G +L ++     S+
Sbjct:   180 DKGPFATFKLQYERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSK 239

Query:   252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV-IKWTPGSLMFVT 310
                LEASF+P+  F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +
Sbjct:   240 GVILEASFTPDSQFIMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFAS 299

Query:   311 GSSEL 315
               S +
Sbjct:   300 ACSNM 304

GO:0003779 "actin binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZMV7	WDR82_CHICK	No assigned EC number	0.4102	0.9277	0.9840	yes	no
Q6GL39	WDR82_XENTR	No assigned EC number	0.4006	0.9277	0.9840	yes	no
Q6UXN9	WDR82_HUMAN	No assigned EC number	0.4038	0.9277	0.9840	yes	no
Q8BFQ4	WDR82_MOUSE	No assigned EC number	0.4038	0.9277	0.9840	yes	no
Q9UT39	YIQ4_SCHPO	No assigned EC number	0.3042	0.9066	0.8826	yes	no
P36104	SWD2_YEAST	No assigned EC number	0.3135	0.8584	0.8662	yes	no
Q6NV31	WDR82_DANRE	No assigned EC number	0.4038	0.9277	0.9840	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.57.252.1	hypothetical protein (307 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_400304	hypothetical protein (446 aa)			•						0.503
	gw1.X.5093.1	hypothetical protein (378 aa)			•						0.499
	gw1.V.3808.1	hypothetical protein (341 aa)			•						0.499
	gw1.IV.3052.1	hypothetical protein (207 aa)			•						0.499
	estExt_Genewise1_v1.C_LG_VIII0460	SubName- Full=Putative uncharacterized protein; (326 aa)			•						0.499
	eugene3.00070994	hypothetical protein (462 aa)			•						0.498
	gw1.XII.1842.1	hypothetical protein (346 aa)			•						0.497
	gw1.IX.47.1	hypothetical protein (385 aa)			•						0.497
	estExt_Genewise1_v1.C_LG_XIV0120	hypothetical protein (258 aa)			•						0.497
	gw1.5330.2.1	annotation not avaliable (237 aa)			•						0.496

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-09
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  115 bits (291), Expect = 4e-30
 Identities = 75/296 (25%), Positives = 129/296 (43%), Gaps = 19/296 (6%)

Query: 30  FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT 89
            + + G ++ + F      L T S D +I+++D+     L+T+      V  V  ++   
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-G 63

Query: 90  TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
           T + S     D+++RL  L   + +R   GH   V S++         S S D+T+ +WD
Sbjct: 64  TYLASG--SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121

Query: 150 QRAEKCQGLLRVQGRP--AAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI 206
               KC   LR       + A+  D   V + +  G I+++D R          +  G  
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR--TGKCVATLT--GHT 177

Query: 207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV 266
            + N V FS DG  +L ++ +G I + D   G  L T        NS    +FSP+G  +
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS---VAFSPDGYLL 234

Query: 267 ISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPV--IKWTPGSLMFVTGSSELSFWI 319
            SGS DG++  W +R+G+ V +          V  + W+P      +GS++ +  I
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSG---HTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (250), Expect = 2e-24
 Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 49/259 (18%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
           L++ E   +   +   +SS+ F      L ++S D++I+++DV    CL T+      V+
Sbjct: 80  LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN 139

Query: 81  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
            V F+   T V  SS    D +++L  L   K +    GH   V S++     +  +S S
Sbjct: 140 SVAFSPDGTFVASSS---QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS 196

Query: 141 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 200
            D T+ LWD    KC G LR              V +VA                     
Sbjct: 197 SDGTIKLWDLSTGKCLGTLRGHENG---------VNSVA--------------------- 226

Query: 201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 260
                        FS DG L+   + +G I V D   G  + T        NS    ++S
Sbjct: 227 -------------FSPDGYLLASGSEDGTIRVWDLRTGECVQTL---SGHTNSVTSLAWS 270

Query: 261 PEGMFVISGSGDGSVYAWS 279
           P+G  + SGS DG++  W 
Sbjct: 271 PDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 83.2 bits (204), Expect = 9e-18
 Identities = 82/322 (25%), Positives = 139/322 (43%), Gaps = 16/322 (4%)

Query: 3   GSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 62
           GS       ++L     +       +  R +   I+S+ F      L++ S D +I+L+D
Sbjct: 34  GSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWD 93

Query: 63  V-TAATCLKTINSKKYG-VDLVCFTSHPTTVIYSSKNGWDESLRLLSL-HDNKYLRYFKG 119
           +      +K++       V  +  +S     I  + +  D +++L  L    K +R  +G
Sbjct: 94  LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG 153

Query: 120 HHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRP----AAAYDDQGL 174
           H + V SL+         SGS LD T+ LWD R  K    L     P    A + D   L
Sbjct: 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL 213

Query: 175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
           + + +  G IR++D    +     +       SD+ V  FS DG L+   + +G I + D
Sbjct: 214 IASGSSDGTIRLWDLSTGKLLRSTLSGH----SDSVVSSFSPDGSLLASGSSDGTIRLWD 269

Query: 235 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT 294
               +  S         +S L  +FSP+G  + SGS DG+V  W + +GK ++S      
Sbjct: 270 L--RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH 327

Query: 295 EPPV--IKWTPGSLMFVTGSSE 314
           E PV  + ++P   + V+G S+
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSD 349

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.7 bits (195), Expect = 1e-16
 Identities = 73/308 (23%), Positives = 122/308 (39%), Gaps = 14/308 (4%)

Query: 28  MSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTS 86
            +   ++  ++S+ F      L + S  D +I+L+D+     L T+      V  + F  
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF-- 206

Query: 87  HPTTVIYSSKNGWDESLRLLSLHDNKYLR-YFKGHHDRVVSLSLCSSKDCFISGSLDRTV 145
            P   +  +    D ++RL  L   K LR    GH D VVS S         SGS D T+
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTI 265

Query: 146 LLWDQRAE-KCQGLLRVQGRP--AAAYDDQGLVFAVAFG-GYIRMFDARKYEKGPFDIFS 201
            LWD R+       L        + A+   G + A     G +R++D    +       +
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL--LSSLT 323

Query: 202 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261
           + G     + + FS DG L++    +     L   R              ++ L  SFSP
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR---TGKPLKTLEGHSNVLSVSFSP 380

Query: 262 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD 321
           +G  V SGS DG+V  W + +G  + +     +    + ++P      +GSS+ +  + D
Sbjct: 381 DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Query: 322 LSKLGAYV 329
           L      V
Sbjct: 441 LKTSLKSV 448

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.4 bits (176), Expect = 5e-14
 Identities = 65/271 (23%), Positives = 112/271 (41%), Gaps = 19/271 (7%)

Query: 29  SFRDYNGRISSMDFH-KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +   +SS+ F       + + S D +IRL+D++    L++  S      +  F+  
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252

Query: 88  PTTVIYSSKNGWDESLRLLSLH-DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL 146
            + +   S    D ++RL  L   +  LR   GH   V+S++         SGS D TV 
Sbjct: 253 GSLLASGSS---DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR 309

Query: 147 LWDQRAEKCQGLLRVQGRPAAAY------DDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 200
           LWD    K    L ++G            D   LV   +  G IR++D R  +       
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP-----L 364

Query: 201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 260
                 S+   V FS DGR++   + +G + + D   G+LL   +      +      FS
Sbjct: 365 KTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT---SRVTSLDFS 421

Query: 261 PEGMFVISGSGDGSVYAWSVRSGKEVASWMS 291
           P+G  + SGS D ++  W +++  +  S+  
Sbjct: 422 PDGKSLASGSSDNTIRLWDLKTSLKSVSFSP 452

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 58/265 (21%), Positives = 97/265 (36%), Gaps = 10/265 (3%)

Query: 69  LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLS 128
            K +   + G  L   +        S           L    +      +GH D + S++
Sbjct: 13  SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIA 72

Query: 129 LCSSKDCFISGSLDRTVLLWDQRAEKCQ-----GLLRVQGRPAAAYDDQGLVFAVAFGGY 183
                +  +SGS D T+ LWD    +       GL        A     G    +A    
Sbjct: 73  FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL 132

Query: 184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-GHIHVLDSFRGTLLS 242
                          I ++ G       + FS DG+L+   +   G I + D   G  LS
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192

Query: 243 TYNVKPVSRNSTLEASFSPEGMFVI-SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW 301
           T        +     +FSP+G  +I SGS DG++  W + +GK + S +S  ++  V  +
Sbjct: 193 TLA---GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Query: 302 TPGSLMFVTGSSELSFWIPDLSKLG 326
           +P   +  +GSS+ +  + DL    
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSS 274

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
             + L+  KGH   V S++         SGS D T+ LWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
           K LR  KGH   V S++     +   SGS D TV +WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 62
          S E+  + + + G ++S+ F     YL + SDD +I+L+D
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 62
          + + + G ++S+ F    + L + SDD ++R++D
Sbjct: 6  TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.98
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
PTZ00420	568	coronin; Provisional	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0639	705	consensus Transducin-like enhancer of split protei	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.83
KOG2055	514	consensus WD40 repeat protein [General function pr	99.83
KOG2048	691	consensus WD40 repeat protein [General function pr	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
KOG1273	405	consensus WD40 repeat protein [General function pr	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.81
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG1334	559	consensus WD40 repeat protein [General function pr	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG1310	758	consensus WD40 repeat protein [General function pr	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.76
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.74
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.73
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.7
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.7
KOG1963	792	consensus WD40 repeat protein [General function pr	99.7
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.69
PRK03629	429	tolB translocation protein TolB; Provisional	99.69
KOG0649	325	consensus WD40 repeat protein [General function pr	99.69
KOG1188	376	consensus WD40 repeat protein [General function pr	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.67
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.67
KOG1188	376	consensus WD40 repeat protein [General function pr	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.66
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.66
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
PRK04922	433	tolB translocation protein TolB; Provisional	99.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.64
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.63
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.63
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.62
PRK04922	433	tolB translocation protein TolB; Provisional	99.61
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.6
KOG2321	703	consensus WD40 repeat protein [General function pr	99.6
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.6
PRK05137	435	tolB translocation protein TolB; Provisional	99.6
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.6
KOG0649	325	consensus WD40 repeat protein [General function pr	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.57
PRK05137	435	tolB translocation protein TolB; Provisional	99.57
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.56
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.56
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.56
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.55
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.54
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.54
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.53
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.52
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.52
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.52
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.52
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.51
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.48
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.48
PRK00178	430	tolB translocation protein TolB; Provisional	99.47
PRK04792	448	tolB translocation protein TolB; Provisional	99.47
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.46
KOG4227	609	consensus WD40 repeat protein [General function pr	99.45
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.44
KOG2139	445	consensus WD40 repeat protein [General function pr	99.44
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.44
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.42
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.4
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.4
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.4
KOG1310	758	consensus WD40 repeat protein [General function pr	99.38
PRK00178	430	tolB translocation protein TolB; Provisional	99.36
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.35
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.34
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.33
KOG2315	566	consensus Predicted translation initiation factor	99.33
KOG2139	445	consensus WD40 repeat protein [General function pr	99.32
PRK04792	448	tolB translocation protein TolB; Provisional	99.32
PRK01029	428	tolB translocation protein TolB; Provisional	99.29
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.29
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.28
KOG2321	703	consensus WD40 repeat protein [General function pr	99.28
PRK01029	428	tolB translocation protein TolB; Provisional	99.23
KOG4547	541	consensus WD40 repeat-containing protein [General	99.23
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.23
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.22
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.21
KOG4547	541	consensus WD40 repeat-containing protein [General	99.21
KOG1334	559	consensus WD40 repeat protein [General function pr	99.14
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.12
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.11
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.11
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.1
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.1
PRK04043	419	tolB translocation protein TolB; Provisional	99.07
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.04
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.03
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.03
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.01
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.0
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.0
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.99
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.99
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.99
PRK04043	419	tolB translocation protein TolB; Provisional	98.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.97
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.95
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.93
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.93
KOG2315	566	consensus Predicted translation initiation factor	98.92
KOG2314	698	consensus Translation initiation factor 3, subunit	98.89
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.89
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.88
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.83
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.81
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.79
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.76
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.73
COG4946	668	Uncharacterized protein related to the periplasmic	98.69
COG4946	668	Uncharacterized protein related to the periplasmic	98.68
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.67
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.67
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.67
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.67
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.66
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.66
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.64
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.64
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.62
KOG2695	425	consensus WD40 repeat protein [General function pr	98.6
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.57
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.56
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.52
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.52
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.46
KOG2314	698	consensus Translation initiation factor 3, subunit	98.38
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.33
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.31
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.28
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.28
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.27
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.26
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.22
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.19
KOG2695	425	consensus WD40 repeat protein [General function pr	98.15
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.15
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.12
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.1
PRK02888	635	nitrous-oxide reductase; Validated	98.1
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.08
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.02
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.01
PRK02888	635	nitrous-oxide reductase; Validated	98.01
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.98
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.97
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.96
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.95
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.94
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.92
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.91
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.9
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.9
COG3391	381	Uncharacterized conserved protein [Function unknow	97.86
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.85
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.84
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.82
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.71
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.67
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.66
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.65
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.64
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.62
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.51
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.46
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.44
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.41
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.29
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.26
KOG3621	726	consensus WD40 repeat-containing protein [General	97.26
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.08
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.05
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.99
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.95
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.9
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.85
KOG3621	726	consensus WD40 repeat-containing protein [General	96.83
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.8
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.73
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.67
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.66
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.66
COG3391	381	Uncharacterized conserved protein [Function unknow	96.66
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.63
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.57
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.57
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.48
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.46
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.42
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.42
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.39
KOG2395	644	consensus Protein involved in vacuole import and d	96.33
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.28
KOG2444	238	consensus WD40 repeat protein [General function pr	96.14
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.03
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.99
PRK13616	591	lipoprotein LpqB; Provisional	95.98
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.88
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.78
PRK13616	591	lipoprotein LpqB; Provisional	95.65
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.59
PHA02713	557	hypothetical protein; Provisional	95.52
KOG2395	644	consensus Protein involved in vacuole import and d	95.48
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.41
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.33
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.95
KOG2444	238	consensus WD40 repeat protein [General function pr	94.93
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.52
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.29
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.23
PHA02713	557	hypothetical protein; Provisional	93.8
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.8
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.66
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.63
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.6
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.6
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.53
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.49
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.49
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.46
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.27
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.2
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.09
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.95
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.82
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.81
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.79
PHA03098	534	kelch-like protein; Provisional	92.6
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.52
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.47
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.1
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.03
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.99
COG5167	776	VID27 Protein involved in vacuole import and degra	91.89
PRK10115	686	protease 2; Provisional	91.73
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.25
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.1
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	90.36
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.01
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.46
PHA02790	480	Kelch-like protein; Provisional	89.31
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.15
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	88.72
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.63
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.55
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.25
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.5
PHA03098	534	kelch-like protein; Provisional	87.4
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.07
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	86.89
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.7
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.68
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	85.55
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.46
PLN00033	398	photosystem II stability/assembly factor; Provisio	84.91
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	84.4
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	84.36
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	84.3
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	83.87
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	83.24
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	81.78
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	81.5
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	80.38

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.3e-49  Score=326.39  Aligned_cols=306  Identities=48%  Similarity=0.828  Sum_probs=285.4

Q ss_pred             HhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        21 ~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      |.+++..|.|+.-.+.|++|.|+++|.+|++++.|-+++|||..++++++++..+.+++..++|..+...++.++. ..|
T Consensus         1 l~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt-k~d   79 (311)
T KOG1446|consen    1 LRSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST-KED   79 (311)
T ss_pred             CcccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC-CCC
Confidence            4578899999999999999999999999999999999999999999999999999999999999999988888775 679


Q ss_pred             ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEe
Q 020021          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF  180 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (332)
                      .+||..++.++++++.+.||.+.|++++.+|-++.|+|+|.|++|++||++..+|...+.....+.++++|.|.+++++.
T Consensus        80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~  159 (311)
T KOG1446|consen   80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALAN  159 (311)
T ss_pred             CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-EEEEEECccCCCCCeeEEEec-CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021          181 GG-YIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (332)
Q Consensus       181 ~~-~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~  258 (332)
                      ++ .|++||+|.+..+|+..+.+. +.....+.+.|||||++++.++..+.+++.|..+|.++.++..++...+.....+
T Consensus       160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~  239 (311)
T KOG1446|consen  160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT  239 (311)
T ss_pred             CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence            65 999999999999999988876 4456789999999999999999999999999999999999988776665567889


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEEEecC-CCCCCceEEeCCCeeEEEeccceEEEeccccccccc
Q 020021          259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA  327 (332)
Q Consensus       259 ~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~~~~  327 (332)
                      |+||++++++|+.||+|.+|++++++.+..+.+ +..++.++.|+|.-.+++|+++.+.+|.|+...+..
T Consensus       240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~~~~  309 (311)
T KOG1446|consen  240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDALPA  309 (311)
T ss_pred             ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEeccccccCC
Confidence            999999999999999999999999999999887 688999999999999999999999999998776654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.5e-49  Score=334.60  Aligned_cols=289  Identities=24%  Similarity=0.402  Sum_probs=251.4

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++.-..+.||.++|.|++|+|+|..|+||+.|.|+|+||+++...+++.++|...|.+++|+|+++.+++++.   |++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~---dg~I  181 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK---DGSI  181 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc---CCeE
Confidence            3445568899999999999999999999999999999999999999999999999999999999999999876   8899


Q ss_pred             EEEEccCCce-EEEeecccccEEEEEecC-----CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeE
Q 020021          104 RLLSLHDNKY-LRYFKGHHDRVVSLSLCS-----SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLV  175 (332)
Q Consensus       104 ~v~d~~~~~~-~~~~~~h~~~V~~v~~~~-----~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~  175 (332)
                      ++||.++|++ .+.|.||...|++++|.|     ..++|||+|.||+|+|||...+.|+..+..+..+  +..+--++.+
T Consensus       182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli  261 (480)
T KOG0271|consen  182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI  261 (480)
T ss_pred             EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE
Confidence            9999998775 568999999999999975     4579999999999999999999988777655443  4455556788


Q ss_pred             EEEEeCCEEEEEECccCC------------------------CC------------------------------------
Q 020021          176 FAVAFGGYIRMFDARKYE------------------------KG------------------------------------  195 (332)
Q Consensus       176 ~~~~~~~~i~vwd~~~~~------------------------~~------------------------------------  195 (332)
                      ++++.|++|++|+.....                        .+                                    
T Consensus       262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS  341 (480)
T KOG0271|consen  262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS  341 (480)
T ss_pred             EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence            888889999999754310                        00                                    


Q ss_pred             ---CeeE------------EEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021          196 ---PFDI------------FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (332)
Q Consensus       196 ---~~~~------------~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s  260 (332)
                         .+.+            ....+|+.-|+.+.||||++++++++.|..|++||.++|+.+.+|+   +|...+..++||
T Consensus       342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR---GHv~~VYqvaws  418 (480)
T KOG0271|consen  342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR---GHVAAVYQVAWS  418 (480)
T ss_pred             ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh---hccceeEEEEec
Confidence               0001            1234566788999999999999999999999999999999999888   567889999999


Q ss_pred             CCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEe
Q 020021          261 PEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW  318 (332)
Q Consensus       261 pdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w  318 (332)
                      .|.+.|++||.|.++++|++++.+....+.+|..+|.++.|+|||..+++|+.|  +++|
T Consensus       419 aDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  419 ADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             cCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence            999999999999999999999999888999999999999999999999999999  6666

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.4e-47  Score=326.09  Aligned_cols=299  Identities=24%  Similarity=0.319  Sum_probs=260.7

Q ss_pred             ceeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccC--CC
Q 020021           12 VSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH--PT   89 (332)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~   89 (332)
                      ++.+.....+.++.+.....|-+.+|..+.||+|+..|||||++|.+++|+..+.+.++++.+|...+..+.|+|.  ..
T Consensus       153 ~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~  232 (459)
T KOG0272|consen  153 LSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDL  232 (459)
T ss_pred             hHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCcc
Confidence            3344444556778888888899999999999999999999999999999999999999999999999999999998  34


Q ss_pred             EEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeE
Q 020021           90 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAA  167 (332)
Q Consensus        90 ~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~  167 (332)
                      .+++++   .|+++++|++.+..++..+.||..+|..++|+|+|++|+|+|.|.+-++||++++........+  +....
T Consensus       233 ~lat~s---~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i  309 (459)
T KOG0272|consen  233 NLATAS---ADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI  309 (459)
T ss_pred             ceeeec---cCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence            666665   4999999999999999999999999999999999999999999999999999987654443333  34567


Q ss_pred             EEcCCCeEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021          168 AYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       168 ~~~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                      ++.++|.+++ ++.|..=||||+|+.+    .+.-+++|..+|..|.|||+|..+++|+.|++++|||++....+.++  
T Consensus       310 af~~DGSL~~tGGlD~~~RvWDlRtgr----~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i--  383 (459)
T KOG0272|consen  310 AFQPDGSLAATGGLDSLGRVWDLRTGR----CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI--  383 (459)
T ss_pred             EecCCCceeeccCccchhheeecccCc----EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec--
Confidence            8888876655 5568899999999754    23455679899999999999999999999999999999987776554  


Q ss_pred             cCCCCCcceEEEECC-CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          247 KPVSRNSTLEASFSP-EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       247 ~~~~~~~~~~v~~sp-dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                       +.|.+-|..|.|+| .|+||+|+|.|++++||...+..+++++.+|.+.|-++.++||+..++|++.|  +++|.+
T Consensus       384 -pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  384 -PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             -ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence             36789999999999 79999999999999999999999999999999999999999999999999999  777754

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.6e-43  Score=287.51  Aligned_cols=287  Identities=18%  Similarity=0.291  Sum_probs=250.5

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++..++|+||.+.|.++.|++|+++|+|+|.||.++|||.-+.+..+.++....+|..++|+|.++.++.+   |.|+.+
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcG---GLdN~C  121 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACG---GLDNKC  121 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEec---CcCcee
Confidence            55569999999999999999999999999999999999999999999999888899999999999988875   679999


Q ss_pred             EEEEccCC------ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcC-CC-
Q 020021          104 RLLSLHDN------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDD-QG-  173 (332)
Q Consensus       104 ~v~d~~~~------~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~-~~-  173 (332)
                      .+|++.+.      +..+.+.+|++.+.++.|-+ ..+++|+|.|.++.+||+++++....+..+.-.  ...+.| ++ 
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN  200 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence            99999865      23567899999999999987 558999999999999999999988888765433  333444 33 


Q ss_pred             eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021          174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (332)
Q Consensus       174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (332)
                      .+++++-|+..++||+|...    ......+|.++|++++|.|+|.-+++|++|+++++||++..+.+..|... .-...
T Consensus       201 tFvSg~cD~~aklWD~R~~~----c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~g  275 (343)
T KOG0286|consen  201 TFVSGGCDKSAKLWDVRSGQ----CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-SIICG  275 (343)
T ss_pred             eEEecccccceeeeeccCcc----eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-cccCC
Confidence            56677789999999999742    33455688899999999999999999999999999999998888777632 33457


Q ss_pred             ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      +++++||..|++|++|..|.++.+||.-.++.+..+.+|..+|++|..+|||..++|||=|  +++|.
T Consensus       276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            7899999999999999999999999999999999999999999999999999999999987  77773

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.6e-43  Score=283.56  Aligned_cols=279  Identities=20%  Similarity=0.270  Sum_probs=231.4

Q ss_pred             CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc--eEEEeecccccE
Q 020021           47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRV  124 (332)
Q Consensus        47 ~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~--~~~~~~~h~~~V  124 (332)
                      -+|+|+|+|.|||+|.+.+|.|..+++..+..|..++++|++..++.++    ...||+||+.+++  ++.++.+|++.|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~----~qhvRlyD~~S~np~Pv~t~e~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG----NQHVRLYDLNSNNPNPVATFEGHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc----CCeeEEEEccCCCCCceeEEeccCCce
Confidence            5899999999999999999999999998888999999999999888764    5789999998865  589999999999


Q ss_pred             EEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-ceeEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEe
Q 020021          125 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSV  202 (332)
Q Consensus       125 ~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~  202 (332)
                      +++.|..+|+.++|||.||++||||++...|...++... .+..+.++ ++.++++.-+|.|++||++...-.   ....
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~---~~li  163 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT---HELI  163 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc---cccC
Confidence            999999999999999999999999999988877776543 34556665 456777777899999999864211   1111


Q ss_pred             cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeE---EeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEE
Q 020021          203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS---TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS  279 (332)
Q Consensus       203 ~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd  279 (332)
                      ......++++++.|||++++.+...|+.++|++....-..   ...-...|...+..+.||||++|||++|+|.+++||+
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn  243 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN  243 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence            1233578999999999999999999999999986643221   1111234667888999999999999999999999999


Q ss_pred             CCCC-ceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc-cccccccccccC
Q 020021          280 VRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAYVGRK  332 (332)
Q Consensus       280 ~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~-~~~~~~~~~~~~  332 (332)
                      ..+- +.-..+..|...++..+||.|+++|+||++|  .++|++ ..+++.+|.||.
T Consensus       244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence            9876 3345578999999999999999999999998  999997 556688888873

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-40  Score=269.24  Aligned_cols=284  Identities=18%  Similarity=0.314  Sum_probs=234.0

Q ss_pred             ccceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcC-----CCeeeEEeeecccceeEEEEccCCCEEEEecCC
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVT-----AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~   97 (332)
                      +.+..+|++|++.|..++..+.+ +.+++++.|+++.+|++.     .|...+.+.+|...|..+.+++++.+.++++  
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s--   82 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS--   82 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc--
Confidence            45677899999999999998774 789999999999999885     4677888999999999999999999888764  


Q ss_pred             CCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC----ceeEEEcCC-
Q 020021           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQ-  172 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~----~~~~~~~~~-  172 (332)
                       ||+++|+||+++++..+.|.||+..|.+++|++|+++++|||+|++|++|+...+... ++....    ..++.++|. 
T Consensus        83 -wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   83 -WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-TIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             -ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-EEecCCCcCcEEEEEEcCCC
Confidence             6999999999999999999999999999999999999999999999999998655433 332222    346677765 


Q ss_pred             --CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC
Q 020021          173 --GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (332)
Q Consensus       173 --~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (332)
                        ..+++++.|++|++||+++.+..    ....+|...++.+++||||+++++|+.||.+.+||+..++.+..+.    +
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~~l~----~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~----a  232 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNCQLR----TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE----A  232 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCcchh----hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----C
Confidence              35666778999999999876432    1234677789999999999999999999999999999999887764    4


Q ss_pred             CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC---------CCCceEEeCCCeeEEEeccce--EEEec
Q 020021          251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD---------TEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~---------~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      ...+.+++|+|+...|+.+ .+..|+|||+.++..+.++....         .....++|++||..|.+|..|  +++|.
T Consensus       233 ~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  233 FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            5678899999987666555 56779999999988877664221         122558899999999998777  77775


Q ss_pred             c
Q 020021          320 P  320 (332)
Q Consensus       320 ~  320 (332)
                      .
T Consensus       312 v  312 (315)
T KOG0279|consen  312 V  312 (315)
T ss_pred             e
Confidence            4

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-39  Score=261.16  Aligned_cols=284  Identities=22%  Similarity=0.341  Sum_probs=232.8

Q ss_pred             ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      -...|..|+++|.++.|+-||+|.+|++.|++||+|+...+.+++++.+|...|..++.+.+..++.++   |-|..+.+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~---GgDk~v~v   85 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASC---GGDKAVQV   85 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccC---CCCceEEE
Confidence            345689999999999999999999999999999999999999999999999999999999998888765   34999999


Q ss_pred             EEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE--EEEecCceeEEE-cCCCeEEEEEeCC
Q 020021          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGRPAAAY-DDQGLVFAVAFGG  182 (332)
Q Consensus       106 ~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~  182 (332)
                      ||+++|+.++.++||.+.|+.+.|+.+...++|||.|.++++||.++.....  .+.......... -....+++++.||
T Consensus        86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG  165 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG  165 (307)
T ss_pred             EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC
Confidence            9999999999999999999999999999999999999999999998765433  221111111111 2355678888899


Q ss_pred             EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      ++|.||+|..+..      ...--.++++++||+||...++++.|+++++.|-.+|+++..+..+-.. ..-..++++..
T Consensus       166 tvRtydiR~G~l~------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~-eykldc~l~qs  238 (307)
T KOG0316|consen  166 TVRTYDIRKGTLS------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM-EYKLDCCLNQS  238 (307)
T ss_pred             cEEEEEeecceee------hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc-eeeeeeeeccc
Confidence            9999999875321      1111137899999999999999999999999999999999888743211 22235678888


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEecCCCCC-CceEEeCCCeeEEEecc-ceEEEec
Q 020021          263 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSLMFVTGS-SELSFWI  319 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~t~~-~d~~~w~  319 (332)
                      ..++++||+||.+++||+.+...+..+..+... +..++++|...-|.++. .-..+|.
T Consensus       239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~  297 (307)
T KOG0316|consen  239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY  297 (307)
T ss_pred             ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence            899999999999999999999999888888876 78999999875555543 3366663

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3e-39  Score=267.13  Aligned_cols=289  Identities=20%  Similarity=0.322  Sum_probs=241.3

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~  102 (332)
                      ..+.+.+.+|.+.|..+.|+|+|..|||||.|+.|.+|++.. -+..-++++|..+|..+.|.+++..+++++.   |.+
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt---Dk~  113 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT---DKT  113 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC---Cce
Confidence            445677899999999999999999999999999999999752 2334567899999999999999999998865   899


Q ss_pred             eEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEE-cCCCeEEEEE
Q 020021          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAY-DDQGLVFAVA  179 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~  179 (332)
                      ++.||+++|++++.+++|.+-|+.++-+.-|- ++.|++.|+++|+||+++..++.++..... ..+.+ +....+++++
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sgg  193 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGG  193 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecc
Confidence            99999999999999999999999998655443 677999999999999998888777733222 22333 3466889999


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC----eEeEEeeecCCCC--Cc
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKPVSR--NS  253 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~--~~  253 (332)
                      .|+.|++||+|...    ..+.+.||...|+.+..||+|.++++.+.|.++++||.+--    .++..+..+ .|+  ..
T Consensus       194 Idn~ikvWd~r~~d----~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~-~hnfekn  268 (338)
T KOG0265|consen  194 IDNDIKVWDLRKND----GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH-IHNFEKN  268 (338)
T ss_pred             ccCceeeeccccCc----ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc-hhhhhhh
Confidence            99999999998643    24566788889999999999999999999999999998532    224444332 222  23


Q ss_pred             ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceEEEecc
Q 020021          254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  320 (332)
Q Consensus       254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~  320 (332)
                      -..++|||+++++.+|+.|+.+++||......+..+.+|.+.|+++.|+|...++.++++|.+++.-
T Consensus       269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence            3468999999999999999999999998888899999999999999999999999999999888753

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.7e-40  Score=283.46  Aligned_cols=246  Identities=20%  Similarity=0.317  Sum_probs=222.7

Q ss_pred             ccceeEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           24 MEVGMSFRDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~d--g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      .....+|+||++.|.++.|+|.  +..||||+.||++++|++++.+.+..+.+|...|..++|+|+|+++.+++.   |.
T Consensus       207 ~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf---D~  283 (459)
T KOG0272|consen  207 CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF---DS  283 (459)
T ss_pred             cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccc---cc
Confidence            4778899999999999999997  568999999999999999999999999999999999999999999998864   89


Q ss_pred             eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEcCCCeEEE-E
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVFA-V  178 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~  178 (332)
                      +.|+||+++++.+.-..||...|.+++|++||..++|||.|..-++||+++++|+-.+..+.+  -.+.++|+|..++ +
T Consensus       284 tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg  363 (459)
T KOG0272|consen  284 TWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG  363 (459)
T ss_pred             chhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeec
Confidence            999999999998888899999999999999999999999999999999999999988866544  3578889997665 4


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v  257 (332)
                      +.|++++|||+|....    .+....|..-|+.|+|+| .|.+|++++.|++++||...++.++..+.   +|.+.|.++
T Consensus       364 s~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa---GHe~kV~s~  436 (459)
T KOG0272|consen  364 SSDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA---GHEGKVISL  436 (459)
T ss_pred             CCCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc---CCccceEEE
Confidence            5689999999986532    566667888899999998 78999999999999999999999888776   678999999


Q ss_pred             EECCCCCEEEEEcCCCcEEEEE
Q 020021          258 SFSPEGMFVISGSGDGSVYAWS  279 (332)
Q Consensus       258 ~~spdg~~l~sgs~Dg~i~vWd  279 (332)
                      +++||+++++|++.|++|++|.
T Consensus       437 Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  437 DISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EeccCCceEEEeccCceeeecc
Confidence            9999999999999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.5e-37  Score=272.47  Aligned_cols=297  Identities=18%  Similarity=0.346  Sum_probs=238.4

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee---ecccceeEEEEccCCCEEEEecCCCCC
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      +++..+++.|..-|+++.|+|||++++|+|.|+++.|||-.+++.+..+.   +|...|..++|+|+++++++++.   |
T Consensus       180 FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa---D  256 (603)
T KOG0318|consen  180 FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA---D  256 (603)
T ss_pred             eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC---C
Confidence            67888999999999999999999999999999999999999999999998   78889999999999999998864   8


Q ss_pred             ceeEEEEccCCceE-------------------------------------------EEeecccccEEEEEecCCCCeEE
Q 020021          101 ESLRLLSLHDNKYL-------------------------------------------RYFKGHHDRVVSLSLCSSKDCFI  137 (332)
Q Consensus       101 ~~v~v~d~~~~~~~-------------------------------------------~~~~~h~~~V~~v~~~~~~~~l~  137 (332)
                      .++|+||+.+++.+                                           +.+.||...|+++..++++++|.
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~  336 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY  336 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence            89999999877543                                           33569999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCceEEEEE-Eec--CceeEEEcCCCeEEEEEeCCEEEEEECccCC----------CCCe-------
Q 020021          138 SGSLDRTVLLWDQRAEKCQGLL-RVQ--GRPAAAYDDQGLVFAVAFGGYIRMFDARKYE----------KGPF-------  197 (332)
Q Consensus       138 s~s~Dg~i~iWd~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~----------~~~~-------  197 (332)
                      ||+.||.|.-||..++.+.... +.+  ..........+.+++++.|.++++.++....          ..|.       
T Consensus       337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence            9999999999999887765443 222  2233444566889999999999999763211          0010       


Q ss_pred             ---e---------EEEecC------CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021          198 ---D---------IFSVGG------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (332)
Q Consensus       198 ---~---------~~~~~~------~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~  259 (332)
                         .         ++....      ..-...+++++|+++.+++|+.|+.+++|.+..+++..+... ..|...++.++|
T Consensus       417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~-~~h~a~iT~vay  495 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL-LEHRAAITDVAY  495 (603)
T ss_pred             CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee-ecccCCceEEEE
Confidence               0         111000      012456789999999999999999999999987665443222 246788999999


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceEE-EecCCCCCCceEEeCCCeeEEEeccceEEEecccccc
Q 020021          260 SPEGMFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK  324 (332)
Q Consensus       260 spdg~~l~sgs~Dg~i~vWd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~  324 (332)
                      |||+.|||+|...+.+.+||+.+++... .+.-|.+.|.+|+|+|+..+++||+-|-.+..|+..+
T Consensus       496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence            9999999999999999999999877633 3556999999999999999999999994444444333

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-38  Score=268.57  Aligned_cols=252  Identities=25%  Similarity=0.392  Sum_probs=207.4

Q ss_pred             eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEE
Q 020021           67 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL  146 (332)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~  146 (332)
                      .|-..+.+|..+|.++.|+|++..+++++.   |.++|+||+.+..+++++++|.+-|.+++|+|||+.+|||+.||+|+
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsG---D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~  182 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSG---DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR  182 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCC---CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence            456678899999999999999999998863   89999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCceEEE-EEEecCce--eEEEc-----C-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC
Q 020021          147 LWDQRAEKCQG-LLRVQGRP--AAAYD-----D-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  217 (332)
Q Consensus       147 iWd~~~~~~~~-~~~~~~~~--~~~~~-----~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d  217 (332)
                      +||.+++++.. .+..+.+.  ..++.     + ...+.+++.||.++|||+..    ....+.+.+|+..|+++.+--+
T Consensus       183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~----~~~~~~lsgHT~~VTCvrwGG~  258 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL----GTCVRTLSGHTASVTCVRWGGE  258 (480)
T ss_pred             EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC----ceEEEEeccCccceEEEEEcCC
Confidence            99999887754 33333332  23332     2 33455566799999999863    3346677899999999988655


Q ss_pred             CCEEEEEcCCCeEEEEEccCCeEeEEeeec--------------------------------------------------
Q 020021          218 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVK--------------------------------------------------  247 (332)
Q Consensus       218 g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------------------------------------------  247 (332)
                      | ++.+++.|++|++|+...|.+.+++..+                                                  
T Consensus       259 g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e  337 (480)
T KOG0271|consen  259 G-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE  337 (480)
T ss_pred             c-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence            4 6788888999999987765443332110                                                  


Q ss_pred             --------------------------CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEe
Q 020021          248 --------------------------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW  301 (332)
Q Consensus       248 --------------------------~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~  301 (332)
                                                ..|..-++.+.||||++|+||||-|++|++||-.+|+.+.++.+|-++|..++|
T Consensus       338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw  417 (480)
T KOG0271|consen  338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW  417 (480)
T ss_pred             eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence                                      123445667999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEeccce--EEEecccccccc
Q 020021          302 TPGSLMFVTGSSE--LSFWIPDLSKLG  326 (332)
Q Consensus       302 sp~~~~l~t~~~d--~~~w~~~~~~~~  326 (332)
                      +.|.++|+++|.|  +++|+...++|.
T Consensus       418 saDsRLlVS~SkDsTLKvw~V~tkKl~  444 (480)
T KOG0271|consen  418 SADSRLLVSGSKDSTLKVWDVRTKKLK  444 (480)
T ss_pred             ccCccEEEEcCCCceEEEEEeeeeeec
Confidence            9999999999998  888998887775

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-36  Score=283.36  Aligned_cols=293  Identities=24%  Similarity=0.400  Sum_probs=243.7

Q ss_pred             ccceeEeccC-CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           24 MEVGMSFRDY-NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        24 ~~~~~~l~~h-~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      ..+...+.+| ...|.++.|+++|+++++++.|+++++|+..+.+  .++++.+|...|..++|++++..++.++.   |
T Consensus       148 ~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~---D  224 (456)
T KOG0266|consen  148 FSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD---D  224 (456)
T ss_pred             ceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC---C
Confidence            3345566665 7889999999999999999999999999998777  77888899999999999999998888765   8


Q ss_pred             ceeEEEEc-cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEEE
Q 020021          101 ESLRLLSL-HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFA  177 (332)
Q Consensus       101 ~~v~v~d~-~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  177 (332)
                      .++|+||+ ..+..++++++|...|++++|+|+++.++||+.|++|++||++++++...+..+.  .....+.+++.++.
T Consensus       225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~  304 (456)
T KOG0266|consen  225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV  304 (456)
T ss_pred             ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence            99999999 5568899999999999999999999999999999999999999999998887654  44567777776555


Q ss_pred             EE-eCCEEEEEECccCCCCCeeEEEecCCCC--CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021          178 VA-FGGYIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  254 (332)
Q Consensus       178 ~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  254 (332)
                      ++ .|+.|++||+......  ....+.++..  .+..+.|+|+|.+++++..|+.+++||+..+.....+..+.....++
T Consensus       305 s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~  382 (456)
T KOG0266|consen  305 SASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI  382 (456)
T ss_pred             EcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeE
Confidence            54 5899999999876421  1112222222  58999999999999999999999999999998888777543322244


Q ss_pred             eEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC-CCCCceEEeCCCeeEEEecc--ceEEEeccc
Q 020021          255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGSLMFVTGS--SELSFWIPD  321 (332)
Q Consensus       255 ~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~t~~--~d~~~w~~~  321 (332)
                      ....+++++.++++|+.|+.|++||+.++..+..+..| ...+..++|+|...++++++  .|..++.|.
T Consensus       383 ~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  383 FSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             ecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            45667899999999999999999999998888888999 88889999999999999988  564444443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-37  Score=263.52  Aligned_cols=287  Identities=17%  Similarity=0.271  Sum_probs=242.1

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~  102 (332)
                      ...+...+.||..+|+.+-|+|+-.++++++.|.+|++||..++++...+++|...+..++|+..|+.++.+++   |-.
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs---Dl~  173 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS---DLS  173 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC---ccc
Confidence            34556668899999999999999999999999999999999999999999999999999999999999998875   677


Q ss_pred             eEEEEccC-CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee--EEEcCCCeEEEEE
Q 020021          103 LRLLSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAYDDQGLVFAVA  179 (332)
Q Consensus       103 v~v~d~~~-~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  179 (332)
                      +++||.+. .++++.+.||...|.++.|-|.|++++|+++|.+|+.||+.++-|+.++..+..-.  .....++.+++++
T Consensus       174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~  253 (406)
T KOG0295|consen  174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC  253 (406)
T ss_pred             hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence            99999877 66788999999999999999999999999999999999999999998887665433  3344566666655


Q ss_pred             -eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC---------------CCCEEEEEcCCCeEEEEEccCCeEeEE
Q 020021          180 -FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN---------------DGRLMLLTTMEGHIHVLDSFRGTLLST  243 (332)
Q Consensus       180 -~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~---------------dg~~l~~~~~dg~i~i~d~~~~~~~~~  243 (332)
                       .|.++++|-+.+.+-..    .+.+|.-++.++++.|               .+.++++++-|++|++||+.+|.++.+
T Consensus       254 s~dqtl~vW~~~t~~~k~----~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t  329 (406)
T KOG0295|consen  254 SNDQTLRVWVVATKQCKA----ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT  329 (406)
T ss_pred             CCCceEEEEEeccchhhh----hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence             57899999876542100    0011111233333322               236899999999999999999999988


Q ss_pred             eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      +.   +|.+.|..++|+|-|+||+|+.+|++++|||+.++++.+++..|+..++++.|+.+.-+++||+-|  +++|.
T Consensus       330 L~---ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  330 LV---GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             Ee---cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            87   578999999999999999999999999999999999999999999999999999999999999987  77775

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6e-37  Score=258.89  Aligned_cols=284  Identities=17%  Similarity=0.289  Sum_probs=240.2

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      -++.+.+.||.+.|.||++.|-+.+++||+.|++++|||+.+|....++.+|-..|..+++++...+++++.   .|.+|
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g---edk~V  217 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG---EDKQV  217 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec---CCCee
Confidence            567788999999999999999999999999999999999999999999999999999999999999999874   48899


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEc-CCCeEEEEEe
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYD-DQGLVFAVAF  180 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~  180 (332)
                      +.||++.++.++.+.||...|.+++.+|.-+.|+||++|.++|+||+++...+.++..+..+  .+.+. -++.+++++.
T Consensus       218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~  297 (460)
T KOG0285|consen  218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH  297 (460)
T ss_pred             EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence            99999999999999999999999999999999999999999999999999888777655433  22333 3789999999


Q ss_pred             CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s  260 (332)
                      |++|++||++..+.    ...+..|...+.+++.+|....+++++.| .|+-|++..|..+..+.   .|+..+..++..
T Consensus       298 D~tvrlWDl~agkt----~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nls---gh~~iintl~~n  369 (460)
T KOG0285|consen  298 DSTVRLWDLRAGKT----MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLS---GHNAIINTLSVN  369 (460)
T ss_pred             CceEEEeeeccCce----eEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccc---cccceeeeeeec
Confidence            99999999987653    22333456688999999999999988877 68999999998887755   566677778887


Q ss_pred             CCCCEEEEEcCCCcEEEEECCCCceEEEe--------cCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          261 PEGMFVISGSGDGSVYAWSVRSGKEVASW--------MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       261 pdg~~l~sgs~Dg~i~vWd~~~~~~~~~~--------~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      .|| ++++|++.|.|..||.+++-.....        ..-.+.|.+-+|...+..|+|+..|  +++|.
T Consensus       370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             cCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence            776 6678999999999999887543222        1224567889999999999999887  66663

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.6e-37  Score=285.50  Aligned_cols=249  Identities=21%  Similarity=0.358  Sum_probs=217.7

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-------------------------------eeE
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-------------------------------CLK   70 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~-------------------------------~~~   70 (332)
                      .+...+ ++..-...++|..|++|+.+||-|-.|..|++|.+...+                               ..+
T Consensus       367 pSic~Y-T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~  445 (707)
T KOG0263|consen  367 PSICMY-TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR  445 (707)
T ss_pred             CcEEEE-EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence            334433 333344568899999999999999999999999886311                               123


Q ss_pred             EeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeC
Q 020021           71 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ  150 (332)
Q Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~  150 (332)
                      ++.+|..+|..+.|+|+.++++++|.   |.++|+|.+.+..++-.++||..+|+.+.|+|-|-+|||+|.|++.++|..
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSE---D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSE---DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccC---CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            57789999999999999999998875   889999999999999999999999999999999999999999999999986


Q ss_pred             CCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeE
Q 020021          151 RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI  230 (332)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i  230 (332)
                      ...++...                                           ..+|.+++.++.|+|+..|+++|+.|.++
T Consensus       523 d~~~PlRi-------------------------------------------faghlsDV~cv~FHPNs~Y~aTGSsD~tV  559 (707)
T KOG0263|consen  523 DHNKPLRI-------------------------------------------FAGHLSDVDCVSFHPNSNYVATGSSDRTV  559 (707)
T ss_pred             ccCCchhh-------------------------------------------hcccccccceEEECCcccccccCCCCceE
Confidence            54332211                                           13567889999999999999999999999


Q ss_pred             EEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEe
Q 020021          231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT  310 (332)
Q Consensus       231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t  310 (332)
                      ++||..+|..++.|.   +|..++.+++|||+|+|||+|++||.|.+||+.+++.+..+..|.+.|.+|+||.||..||+
T Consensus       560 RlWDv~~G~~VRiF~---GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLas  636 (707)
T KOG0263|consen  560 RLWDVSTGNSVRIFT---GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLAS  636 (707)
T ss_pred             EEEEcCCCcEEEEec---CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEe
Confidence            999999999998886   68899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccce--EEEecc
Q 020021          311 GSSE--LSFWIP  320 (332)
Q Consensus       311 ~~~d--~~~w~~  320 (332)
                      |+.|  +++|+.
T Consensus       637 gg~DnsV~lWD~  648 (707)
T KOG0263|consen  637 GGADNSVRLWDL  648 (707)
T ss_pred             cCCCCeEEEEEc
Confidence            9988  888864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.1e-35  Score=255.12  Aligned_cols=283  Identities=26%  Similarity=0.470  Sum_probs=239.7

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      +++|++|.++|++++|+|++++|++++.|+.+++||..+++....+..|...+..+.|.+++..+++++.   |+.+++|
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~   78 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRLW   78 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC---CCeEEEE
Confidence            4678899999999999999999999999999999999988888888888888888999999988887754   7899999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEEEEEe-CCE
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF-GGY  183 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~  183 (332)
                      |+.+++.+..+..|...|.++.|+++++.+++++.|+.+++||+++++....+..+.  .....+.+.+.+++++. ++.
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200          79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence            999988888899999999999999998899999999999999998777766665332  34556667677777776 899


Q ss_pred             EEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCC
Q 020021          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (332)
Q Consensus       184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg  263 (332)
                      |++||++..+.  ...  ...+...+..+.++|+++.+++++.++.|++||...++.+..+.   .+...+..++|+|++
T Consensus       159 i~i~d~~~~~~--~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~  231 (289)
T cd00200         159 IKLWDLRTGKC--VAT--LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR---GHENGVNSVAFSPDG  231 (289)
T ss_pred             EEEEEcccccc--cee--EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh---hcCCceEEEEEcCCC
Confidence            99999975331  222  22444578999999999999999999999999999887776654   344578889999999


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          264 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       264 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      .++++++.||.|++||+.+++.+..+..|...+.+++|+|++..+++++.|  +++|+
T Consensus       232 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999999889999999999888888888898899999999999999999887  66663

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.4e-37  Score=282.70  Aligned_cols=212  Identities=28%  Similarity=0.423  Sum_probs=193.7

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      .+-...++|-||+++|.+.+|+|+.++|+++|.|+++|+|.+.+..|+..+++|..+|..+.|+|.|-++++++   .|.
T Consensus       439 ~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas---~D~  515 (707)
T KOG0263|consen  439 DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS---HDQ  515 (707)
T ss_pred             cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC---CCc
Confidence            34555677999999999999999999999999999999999999999999999999999999999998888774   499


Q ss_pred             eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  181 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (332)
                      +.++|......+++.+.||.+.|.++.|+|+..+++|||.|.++|+||..++..+                         
T Consensus       516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-------------------------  570 (707)
T KOG0263|consen  516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-------------------------  570 (707)
T ss_pred             eeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-------------------------
Confidence            9999999999999999999999999999999999999999999999999877543                         


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp  261 (332)
                         |+|               .||..+|.+++|||+|+++++|+.||.|.+||+.++.++..+.   .|.+.+.++.||.
T Consensus       571 ---RiF---------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~---~Ht~ti~SlsFS~  629 (707)
T KOG0263|consen  571 ---RIF---------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK---GHTGTIYSLSFSR  629 (707)
T ss_pred             ---EEe---------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh---cccCceeEEEEec
Confidence               332               2567789999999999999999999999999999999887776   4578899999999


Q ss_pred             CCCEEEEEcCCCcEEEEECCC
Q 020021          262 EGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       262 dg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      ||..||+||.|.+|++||+.+
T Consensus       630 dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  630 DGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CCCEEEecCCCCeEEEEEchh
Confidence            999999999999999999965

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-36  Score=244.80  Aligned_cols=261  Identities=16%  Similarity=0.250  Sum_probs=210.2

Q ss_pred             ceeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEE
Q 020021           12 VSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV   91 (332)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   91 (332)
                      +.-+|..+=-.-....+.|+||+-.|+.+..++||++.+++|+|+++|+||+.+++..+.|.+|...|.+++|+++..++
T Consensus        41 i~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qi  120 (315)
T KOG0279|consen   41 IVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQI  120 (315)
T ss_pred             EEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCcee
Confidence            44456555333456688899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCceeEEEEccCCceEEEeec--ccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEEEEEec--Cce
Q 020021           92 IYSSKNGWDESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRP  165 (332)
Q Consensus        92 ~~~s~~g~d~~v~v~d~~~~~~~~~~~~--h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~  165 (332)
                      ++++.   |.++++||..... ..++..  |.+-|.++.|+|.  ...++++|+|+++|+||+++-+....+..+  ..+
T Consensus       121 vSGSr---DkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~  196 (315)
T KOG0279|consen  121 VSGSR---DKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN  196 (315)
T ss_pred             ecCCC---cceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEE
Confidence            99875   9999999987643 344443  3788999999997  569999999999999999887766655433  345


Q ss_pred             eEEEcCCCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe
Q 020021          166 AAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (332)
Q Consensus       166 ~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (332)
                      .+.++++|.+.+.+ .||.+.+||++..+.    .+.+ ++...|++++|+|....|+.+... .|+|||+.++..+.++
T Consensus       197 t~~vSpDGslcasGgkdg~~~LwdL~~~k~----lysl-~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  197 TVTVSPDGSLCASGGKDGEAMLWDLNEGKN----LYSL-EAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEEL  270 (315)
T ss_pred             EEEECCCCCEEecCCCCceEEEEEccCCce----eEec-cCCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhc
Confidence            67788888766655 589999999986543    3333 344679999999987666655544 5999999999888777


Q ss_pred             eecCCC------CCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          245 NVKPVS------RNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       245 ~~~~~~------~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      +.....      ...+..++||+||+.|++|-.|+.|++|.+..
T Consensus       271 ~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  271 KLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             cccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            643222      23446789999999999999999999998753

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.6e-35  Score=268.36  Aligned_cols=295  Identities=20%  Similarity=0.388  Sum_probs=248.2

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      |..-...|++.+|++..++||+|-..|...+|++...++++.+.-.+.+|..++|+..|..++.++..  =+++.||++.
T Consensus       261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--lgQLlVweWq  338 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--LGQLLVWEWQ  338 (893)
T ss_pred             ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--cceEEEEEee
Confidence            34444789999999999999999999999999999999999999888899999999999999998752  4689999999


Q ss_pred             CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcCCC-eEEEEEeCCEEEE
Q 020021          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQG-LVFAVAFGGYIRM  186 (332)
Q Consensus       110 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~i~v  186 (332)
                      +..++...+||-..+++++++|||.++|||+.||.||+||..++-|..++..+  ++....+...+ .+++++.||+||.
T Consensus       339 sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  339 SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA  418 (893)
T ss_pred             ccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence            99999999999999999999999999999999999999999999999998665  34555666555 5666778999999


Q ss_pred             EECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC-eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (332)
Q Consensus       187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~  265 (332)
                      ||+..+.+  +..+.. +.+....+++..|.|.++.+|+.|. .|.+|++.+|+++..+.   +|.++|.+++|+|+|..
T Consensus       419 wDlkRYrN--fRTft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs---GHEgPVs~l~f~~~~~~  492 (893)
T KOG0291|consen  419 WDLKRYRN--FRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS---GHEGPVSGLSFSPDGSL  492 (893)
T ss_pred             eeecccce--eeeecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc---CCCCcceeeEEccccCe
Confidence            99986643  223321 2223567788889999999998875 79999999999998887   68899999999999999


Q ss_pred             EEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc-cccccccccccC
Q 020021          266 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAYVGRK  332 (332)
Q Consensus       266 l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~-~~~~~~~~~~~~  332 (332)
                      |||||.|.+||+||+-..........+...+..++|+|||+.++.+.-|  +++|++ +...++-++|||
T Consensus       493 LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk  562 (893)
T KOG0291|consen  493 LASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK  562 (893)
T ss_pred             EEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh
Confidence            9999999999999996543333333456678999999999988776654  999998 556677888886

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-36  Score=258.61  Aligned_cols=288  Identities=23%  Similarity=0.381  Sum_probs=230.7

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC---eeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      +..+.|..|+.+|.-+.||++|+||||++.|.|..||++...   +..+++.+|..+|.-+.|+|+.++++++.   .|.
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg---~~e  291 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG---FDE  291 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC---chH
Confidence            345668999999999999999999999999999999998643   34788999999999999999999999874   477


Q ss_pred             eeEEEEccCCceEEEee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEE--EEecCceeEEEcCCC-eEEE
Q 020021          102 SLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL--LRVQGRPAAAYDDQG-LVFA  177 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~  177 (332)
                      .+++||+.+|..+..+. +|...+.+++|+|||..+++|+.|++|..||+..+.....  .+.+.....+..+++ .+++
T Consensus       292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~  371 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLL  371 (519)
T ss_pred             heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEE
Confidence            89999999998776664 4567899999999999999999999999999865432111  111222334444544 5677


Q ss_pred             EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v  257 (332)
                      +..|..|++++.......  ...+   ...++.+.++|.||+++++.-.+..+++||+....++..+.++.. ...++..
T Consensus       372 v~~d~~i~l~~~e~~~dr--~lis---e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq-~~fiIrS  445 (519)
T KOG0293|consen  372 VTVDKKIRLYNREARVDR--GLIS---EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ-GHFIIRS  445 (519)
T ss_pred             Eecccceeeechhhhhhh--cccc---ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc-cceEEEe
Confidence            778999999987643211  1111   224789999999999999999999999999987777766654432 3455666


Q ss_pred             EECC-CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCe-eEEEeccce--EEEeccc
Q 020021          258 SFSP-EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       258 ~~sp-dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~t~~~d--~~~w~~~  321 (332)
                      +|.- +..++||||+|+.||||+..+++.+..+.+|...|+||+|+|.. .|+++|+.|  +++|-++
T Consensus       446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            7764 55899999999999999999999999999999999999999954 799999998  6666653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.1e-34  Score=232.71  Aligned_cols=285  Identities=15%  Similarity=0.360  Sum_probs=226.9

Q ss_pred             cccceeEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCC---CeeeEEee-ecccceeEEEEccCCCEEEEecCC
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTA---ATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~d-g~~l~tgs~D~tv~iwd~~~---~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~   97 (332)
                      ++...+.+.+|.+.|..++|+|- |.+|||+|.|+.||||++..   -.|...+. +|...|..++|+|+++.+++++. 
T Consensus         3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF-   81 (312)
T KOG0645|consen    3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF-   81 (312)
T ss_pred             cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec-
Confidence            46678889999999999999998 88999999999999999984   56666663 67788999999999998888764 


Q ss_pred             CCCceeEEEEccCC--ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce---EEEEEEec--CceeEEEc
Q 020021           98 GWDESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK---CQGLLRVQ--GRPAAAYD  170 (332)
Q Consensus        98 g~d~~v~v~d~~~~--~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~---~~~~~~~~--~~~~~~~~  170 (332)
                        |.++-+|.-..+  +++.++.||.++|.+++|+++|++|||+|+|+.|-||....+.   |...++.+  .+-.+.++
T Consensus        82 --D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH  159 (312)
T KOG0645|consen   82 --DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH  159 (312)
T ss_pred             --cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence              889999976654  4688999999999999999999999999999999999976432   44455433  23456777


Q ss_pred             CC-CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021          171 DQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       171 ~~-~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (332)
                      |. ..++++++|++|++|.-.. ...-.....+.++...+-+++|++.|..+++++.|++++||-..+.       ....
T Consensus       160 Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~  231 (312)
T KOG0645|consen  160 PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGM  231 (312)
T ss_pred             CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchh
Confidence            74 5777888999999997653 1222234566778778999999999999999999999999985531       1224


Q ss_pred             CCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc--e----E-EEecCCCCCCceEEeCCC-eeEEEeccce--EEEec
Q 020021          250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK--E----V-ASWMSFDTEPPVIKWTPG-SLMFVTGSSE--LSFWI  319 (332)
Q Consensus       250 ~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~--~----~-~~~~~~~~~v~~l~~sp~-~~~l~t~~~d--~~~w~  319 (332)
                      |...+..++|.  +..|||++.|+.|+++.-...-  .    + +.-..|...|+++.|.|. ..+|++++.|  +++|.
T Consensus       232 ~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  232 HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            56677788887  6799999999999999776421  1    1 112468889999999995 6788998887  77775


Q ss_pred             c
Q 020021          320 P  320 (332)
Q Consensus       320 ~  320 (332)
                      .
T Consensus       310 l  310 (312)
T KOG0645|consen  310 L  310 (312)
T ss_pred             e
Confidence            4

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=2.6e-36  Score=259.08  Aligned_cols=283  Identities=24%  Similarity=0.418  Sum_probs=230.4

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      ...+..|.+.+..+.|-++...|+||+.|..|++|++...+  .+.++.+...++..+.|.+++..+++++.   |++++
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~---d~~~r  244 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN---DKNLR  244 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC---CCcee
Confidence            34478899999999999998999999999999999998665  56778888888999999999988887654   88999


Q ss_pred             EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEEeCCE
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAFGGY  183 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  183 (332)
                      +|++.+.....+|.||++.|+++.|......+++|+.|.+|+.||+....|..++-.... ...+. ....++++-+|++
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~-~~~~~~SgH~Dkk  323 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC-SISDVISGHFDKK  323 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEe-cceeeeecccccc
Confidence            999999999999999999999999998777799999999999999998888765432211 11111 1344566668999


Q ss_pred             EEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC-CcceEEEECCC
Q 020021          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-NSTLEASFSPE  262 (332)
Q Consensus       184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~v~~spd  262 (332)
                      ||+||.|....  ......+   ..+.++..+++|..+++++-|.++.++|+++.+..+.+....... .-.+.+.|||+
T Consensus       324 vRfwD~Rs~~~--~~sv~~g---g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd  398 (459)
T KOG0288|consen  324 VRFWDIRSADK--TRSVPLG---GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD  398 (459)
T ss_pred             eEEEeccCCce--eeEeecC---cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence            99999986432  1112222   368999999999999999999999999999988888876533222 22457899999


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEecCC--CCCCceEEeCCCeeEEEeccce--EEEe
Q 020021          263 GMFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLMFVTGSSE--LSFW  318 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~t~~~d--~~~w  318 (332)
                      +.|+|+||.||.|+||++.++++...+...  ++.|++++|+|.|..+++++.+  +.+|
T Consensus       399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  399 GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            999999999999999999999886655433  3369999999999999999887  6666

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.2e-34  Score=235.38  Aligned_cols=241  Identities=21%  Similarity=0.360  Sum_probs=209.7

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC------eeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++-....|-+.+|+|.|+++|.||.|...-||++.+.      +..+.+.+|...+.++.|.++ ..+++++.   |.++
T Consensus        93 ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SG---D~TC  168 (343)
T KOG0286|consen   93 IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSG---DMTC  168 (343)
T ss_pred             EecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCC---CceE
Confidence            5556788999999999999999999999999999865      344668889888888888874 46676653   8999


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcCCCeEEEEE-
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGLVFAVA-  179 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-  179 (332)
                      -+||+++++.+..|.||.+.|.+++++| +++.|+||+.|++.++||++.+.|...|..+  ..+.+.|.|++.-|+.+ 
T Consensus       169 alWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS  248 (343)
T KOG0286|consen  169 ALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS  248 (343)
T ss_pred             EEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC
Confidence            9999999999999999999999999999 9999999999999999999999999988665  35677888888766655 


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~  259 (332)
                      .|+++|+||+|..+  .+.+++......++++++||..|+++.+|..|.++.+||.-+++....+.   +|.+.|.++..
T Consensus       249 DD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~---GHeNRvScl~~  323 (343)
T KOG0286|consen  249 DDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA---GHENRVSCLGV  323 (343)
T ss_pred             CCceeEEEeecCCc--EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee---ccCCeeEEEEE
Confidence            57999999999743  45566655555689999999999999999999999999999998887776   68899999999


Q ss_pred             CCCCCEEEEEcCCCcEEEEE
Q 020021          260 SPEGMFVISGSGDGSVYAWS  279 (332)
Q Consensus       260 spdg~~l~sgs~Dg~i~vWd  279 (332)
                      +|||.-++|||.|.++|||.
T Consensus       324 s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  324 SPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCCCcEEEecchhHheeecC
Confidence            99999999999999999994

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-35  Score=272.82  Aligned_cols=268  Identities=19%  Similarity=0.311  Sum_probs=219.4

Q ss_pred             ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      +.-.|.+|.|+|.+|.|+|++++++|||+|.+|++|+..+.+|+.++.+|..-|..+.|++.-..|+++|.   |.+||+
T Consensus        43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD---DQTIrI  119 (1202)
T KOG0292|consen   43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD---DQTIRI  119 (1202)
T ss_pred             HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC---CCeEEE
Confidence            34458899999999999999999999999999999999999999999999999999999999999999875   899999


Q ss_pred             EEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcC--CCeEEEEEeCCE
Q 020021          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD--QGLVFAVAFGGY  183 (332)
Q Consensus       106 ~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  183 (332)
                      |++.+++++.++.||...|+|..|+|..+.++|+|-|.|||+||+..-+....     .+. .+..  .+.....     
T Consensus       120 WNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~-----~pg-~~e~~~~~~~~~~-----  188 (1202)
T KOG0292|consen  120 WNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNK-----APG-SLEDQMRGQQGNS-----  188 (1202)
T ss_pred             EeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCC-----CCC-Cchhhhhccccch-----
Confidence            99999999999999999999999999999999999999999999854321111     011 0000  0000000     


Q ss_pred             EEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCC
Q 020021          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (332)
Q Consensus       184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg  263 (332)
                       .++    ........+-+.||.-.|+.++|.|.-.++++|++|+.|++|.+...+.- +...-.+|.+.+.++.|+|..
T Consensus       189 -dLf----g~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-EvDtcrgH~nnVssvlfhp~q  262 (1202)
T KOG0292|consen  189 -DLF----GQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-EVDTCRGHYNNVSSVLFHPHQ  262 (1202)
T ss_pred             -hhc----CCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce-eehhhhcccCCcceEEecCcc
Confidence             000    00011123456788889999999999999999999999999997643322 112223677899999999999


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          264 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       264 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      ..++|.|+|++|||||+...+.+.++...+.+.+.++-+|..+++++|-.
T Consensus       263 ~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHD  312 (1202)
T KOG0292|consen  263 DLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHD  312 (1202)
T ss_pred             ceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecC
Confidence            99999999999999999999999999888889999999999999998854

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=9.8e-36  Score=260.15  Aligned_cols=287  Identities=17%  Similarity=0.313  Sum_probs=227.7

Q ss_pred             cceeEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCC-CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021           25 EVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~  102 (332)
                      +...+|.||+..|+++.|.| .+.+|+++|.|+.|+||++-. +.|++++.+|..+|..++|+..+..+++++   +|..
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s---fD~~  281 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSAS---FDRF  281 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeee---ccee
Confidence            45678999999999999999 789999999999999999975 999999999999999999999999999875   5999


Q ss_pred             eEEEEccCCceEEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEE--ecCceeEEEcCCC-eEEEE
Q 020021          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQG-LVFAV  178 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~  178 (332)
                      +++||.++|+++..+. -...++++.|+|++ +.|+.|+.|+.|+.||+++++.+..+.  +.......|-+.+ .+++.
T Consensus       282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            9999999999887764 22456789999988 899999999999999999988654432  1223334454544 56666


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEe---EEeeecCCCCCcce
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL---STYNVKPVSRNSTL  255 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~  255 (332)
                      +.++.+++|+.+..-.-.+.. .  ...-...+++.+|.+..+++-+.|+.|.++...-.-.+   ..++.+. ..+..+
T Consensus       361 SDdks~riWe~~~~v~ik~i~-~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~-vaGys~  436 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIA-D--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS-VAGYSC  436 (503)
T ss_pred             ccCccEEEEEcCCCccchhhc-c--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee-ccCcee
Confidence            678999999977532211111 0  11113467899999999999999999999986432222   2333332 235556


Q ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCe-eEEEeccce--EEEec
Q 020021          256 EASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSE--LSFWI  319 (332)
Q Consensus       256 ~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~t~~~d--~~~w~  319 (332)
                      .+.|||||++|++|+.||.+++||..+.+.+..+..|++.+..+.|+|.. ..++|++-+  +++|+
T Consensus       437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            89999999999999999999999999999999999999999999999975 567777655  77774

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.8e-33  Score=278.74  Aligned_cols=279  Identities=15%  Similarity=0.269  Sum_probs=216.1

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC----e----eeEEeeecccceeEEEEccC-CCEEEEecCCCCC
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----T----CLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWD  100 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~~~~~s~~g~d  100 (332)
                      +.+|.+.|.+++|+|+|++||||+.|++|+|||+.+.    .    ....+. +...+..++|++. +..+++++   .|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~---~D  554 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSN---FE  554 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEe---CC
Confidence            4459999999999999999999999999999997542    1    112222 2346788899875 45566554   48


Q ss_pred             ceeEEEEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEE-cCCCe-EE
Q 020021          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAY-DDQGL-VF  176 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~-~~~~~-~~  176 (332)
                      ++|++||+.+++.+..+.+|.+.|++++|+| ++.+|+||+.|++|++||++++.+...+..... ....+ .+++. ++
T Consensus       555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLA  634 (793)
T ss_pred             CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEE
Confidence            9999999999999999999999999999997 788999999999999999998887766654322 23344 34454 55


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC------eEeEEeeecCCC
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPVS  250 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~  250 (332)
                      +++.|+.|++||++.....   .....+|...+..+.|+ ++.++++++.|++|++||+..+      ..+..+.   .|
T Consensus       635 tgs~dg~I~iwD~~~~~~~---~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~---gh  707 (793)
T PLN00181        635 FGSADHKVYYYDLRNPKLP---LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM---GH  707 (793)
T ss_pred             EEeCCCeEEEEECCCCCcc---ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc---CC
Confidence            5556899999999864321   22334677788999997 7889999999999999998743      3444444   45


Q ss_pred             CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-------------cCCCCCCceEEeCCCeeEEEeccce--E
Q 020021          251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-------------MSFDTEPPVIKWTPGSLMFVTGSSE--L  315 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-------------~~~~~~v~~l~~sp~~~~l~t~~~d--~  315 (332)
                      ...+..++|+|++++|++|+.|+.|++|+......+..+             ..+...|.+++|+|++.+|++|+.+  +
T Consensus       708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I  787 (793)
T PLN00181        708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI  787 (793)
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence            667778999999999999999999999998765443221             2344568999999999999999887  6


Q ss_pred             EEec
Q 020021          316 SFWI  319 (332)
Q Consensus       316 ~~w~  319 (332)
                      ++|+
T Consensus       788 ~i~~  791 (793)
T PLN00181        788 KILE  791 (793)
T ss_pred             EEEe
Confidence            6665

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=228.54  Aligned_cols=274  Identities=15%  Similarity=0.256  Sum_probs=220.3

Q ss_pred             HhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccCCCEEEEecCCC
Q 020021           21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (332)
Q Consensus        21 ~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g   98 (332)
                      ..+....+++.-..+.|+.+.+.||++.||+|++-. ||+||+++++  .+.++.+|...|..+.|..+++.+++++.  
T Consensus        27 a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse--  103 (311)
T KOG0315|consen   27 ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE--  103 (311)
T ss_pred             hhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC--
Confidence            356677888888888899999999999999888755 8999998765  47889999999999999999999998864  


Q ss_pred             CCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec-C--ceeEEEcCCCeE
Q 020021           99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-G--RPAAAYDDQGLV  175 (332)
Q Consensus        99 ~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~--~~~~~~~~~~~~  175 (332)
                       |+++|+||+....+.+.++ |.++|+++..+|+...|+++.++|.|++||+....|...+... .  .......+++..
T Consensus       104 -Dgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm  181 (311)
T KOG0315|consen  104 -DGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM  181 (311)
T ss_pred             -CceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence             8999999998876666665 7799999999999999999999999999999988765544221 1  223455677777


Q ss_pred             EEEEe-CCEEEEEECccCCC-CCe-eEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC
Q 020021          176 FAVAF-GGYIRMFDARKYEK-GPF-DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  252 (332)
Q Consensus       176 ~~~~~-~~~i~vwd~~~~~~-~~~-~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  252 (332)
                      ++++. .|.+.+|++-.... .++ .+....-|...+..|.+|||+++|++++.|.+++||+...- ..-+.... .|..
T Consensus       182 l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~-gh~r  259 (311)
T KOG0315|consen  182 LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLT-GHQR  259 (311)
T ss_pred             EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEee-cCCc
Confidence            76665 59999999764221 111 11223345567888999999999999999999999998765 22222222 4668


Q ss_pred             cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEe
Q 020021          253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW  301 (332)
Q Consensus       253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~  301 (332)
                      .++.++||.||+||+|||.|+.+++|++++++.+....+|-.+..|++.
T Consensus       260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence            9999999999999999999999999999999999998888877777764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.4e-34  Score=262.52  Aligned_cols=298  Identities=16%  Similarity=0.270  Sum_probs=236.3

Q ss_pred             HhcccceeEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021           21 LQSMEVGMSFRD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (332)
Q Consensus        21 ~~~~~~~~~l~~-h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   99 (332)
                      |...++.+.+++ |++||-.++|+|.+.+|+|||.|+++++||+..+.|++.+.+|+..|..+.|+|+...-+..+ ++-
T Consensus        91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~s-g~~  169 (775)
T KOG0319|consen   91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLAS-GAT  169 (775)
T ss_pred             cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheee-cCC
Confidence            344577888888 999999999999999999999999999999999999999999999999999999988633322 234


Q ss_pred             CceeEEEEccCCc-eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEE-------------------
Q 020021          100 DESLRLLSLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-------------------  159 (332)
Q Consensus       100 d~~v~v~d~~~~~-~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-------------------  159 (332)
                      |+++++||+.+.. ++.+++.|.+.|++++|.+|+..++++|+|+.+.+||+.+.++..++                   
T Consensus       170 D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~  249 (775)
T KOG0319|consen  170 DGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGK  249 (775)
T ss_pred             CceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCc
Confidence            8999999998644 47888999999999999999999999999999999997432110000                   


Q ss_pred             -------------Ee--------------c-----------------------------------------Cce------
Q 020021          160 -------------RV--------------Q-----------------------------------------GRP------  165 (332)
Q Consensus       160 -------------~~--------------~-----------------------------------------~~~------  165 (332)
                                   +.              +                                         +..      
T Consensus       250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm  329 (775)
T KOG0319|consen  250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM  329 (775)
T ss_pred             ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence                         00              0                                         000      


Q ss_pred             ----------------------------e----------EEEc--CCC-eEEEEEeCCEEEEEECccCC-----------
Q 020021          166 ----------------------------A----------AAYD--DQG-LVFAVAFGGYIRMFDARKYE-----------  193 (332)
Q Consensus       166 ----------------------------~----------~~~~--~~~-~~~~~~~~~~i~vwd~~~~~-----------  193 (332)
                                                  +          ...+  .++ .+++++.|..+++|-+.+..           
T Consensus       330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g  409 (775)
T KOG0319|consen  330 KFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG  409 (775)
T ss_pred             eecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence                                        0          0000  122 33444456677777441100           


Q ss_pred             -----------------------CCCeeEEE------------------ecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021          194 -----------------------KGPFDIFS------------------VGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (332)
Q Consensus       194 -----------------------~~~~~~~~------------------~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i  232 (332)
                                             ...+..+.                  ...|..+|++++++|+.+++++|+.|++.+|
T Consensus       410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi  489 (775)
T KOG0319|consen  410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI  489 (775)
T ss_pred             cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence                                   00011111                  1224568999999999999999999999999


Q ss_pred             EEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc
Q 020021          233 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       233 ~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      |++..+.++.++.   +|...+++|.|+|..+.+||+|.|++|+||.+.+..+++++.+|.+.|...+|-.++.+|++++
T Consensus       490 W~le~~~l~~vLs---GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~  566 (775)
T KOG0319|consen  490 WDLEQLRLLGVLS---GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG  566 (775)
T ss_pred             ecccCceEEEEee---CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc
Confidence            9999888888887   6889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ce--EEEecccc
Q 020021          313 SE--LSFWIPDL  322 (332)
Q Consensus       313 ~d--~~~w~~~~  322 (332)
                      .|  +++|+...
T Consensus       567 adGliKlWnikt  578 (775)
T KOG0319|consen  567 ADGLIKLWNIKT  578 (775)
T ss_pred             CCCcEEEEeccc
Confidence            88  99998754

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.8e-33  Score=245.29  Aligned_cols=285  Identities=17%  Similarity=0.320  Sum_probs=233.9

Q ss_pred             eEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCC--Ceee------EEe--ee----cccceeEEEEccCCCEEE
Q 020021           28 MSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTA--ATCL------KTI--NS----KKYGVDLVCFTSHPTTVI   92 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~--~~~~------~~~--~~----~~~~v~~~~~~~~~~~~~   92 (332)
                      +.++ |+.+|.+.+|+|-.. ++++|+.|-+.|+|++..  ..+.      +.+  .+    .+..|+.++|+.+|..++
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            3455 999999999999876 899999999999999863  2111      111  11    123589999999999999


Q ss_pred             EecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEc
Q 020021           93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYD  170 (332)
Q Consensus        93 ~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~  170 (332)
                      +++.   |+.+|+|+.. |..+.+|..|+++|.++.|+..|++++|++.|+++.+||..++.+...+..+..+  .+.+.
T Consensus       252 tG~~---~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~  327 (524)
T KOG0273|consen  252 TGSE---DGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ  327 (524)
T ss_pred             Eeec---CcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence            9875   7889999974 4667889999999999999999999999999999999999888877666555443  24455


Q ss_pred             CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC
Q 020021          171 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (332)
                      ....+.+++.|+.|+++.+...  .|  .....+|..+|+++.|.|.|.+|++++.|++++||.+......+.+.   .|
T Consensus       328 ~~~~F~ts~td~~i~V~kv~~~--~P--~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~---~H  400 (524)
T KOG0273|consen  328 SNDEFATSSTDGCIHVCKVGED--RP--VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ---AH  400 (524)
T ss_pred             cCceEeecCCCceEEEEEecCC--Cc--ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh---hh
Confidence            6667777888999999987642  23  23445688999999999999999999999999999987766665554   46


Q ss_pred             CCcceEEEECCCC---------CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          251 RNSTLEASFSPEG---------MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       251 ~~~~~~v~~spdg---------~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      ...+..+.|||+|         ..+++++.|++|++||+..+.++++++.|..+|.+|+|+|+|+++++|+-|  +.+|.
T Consensus       401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws  480 (524)
T KOG0273|consen  401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS  480 (524)
T ss_pred             ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence            6778888888855         589999999999999999999999999999999999999999999999988  66676


Q ss_pred             ccccc
Q 020021          320 PDLSK  324 (332)
Q Consensus       320 ~~~~~  324 (332)
                      ....+
T Consensus       481 ~~~~~  485 (524)
T KOG0273|consen  481 TKTGK  485 (524)
T ss_pred             ccchh
Confidence            54433

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.3e-33  Score=246.21  Aligned_cols=240  Identities=20%  Similarity=0.312  Sum_probs=202.6

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ..+..+|..|.++|++|.|+.+|+||++++.|+++.+||..++++.+.+..|..+...+.|..+. .+++++.   |+.|
T Consensus       266 G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~t---d~~i  341 (524)
T KOG0273|consen  266 GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSST---DGCI  341 (524)
T ss_pred             chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCC---CceE
Confidence            45667899999999999999999999999999999999999999999999888765556776554 3444443   7899


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCE
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGY  183 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (332)
                      +|+-+....++.++.||+++|.++.|+|.+..|+|+|.|+|++||++....+...++.+.                    
T Consensus       342 ~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs--------------------  401 (524)
T KOG0273|consen  342 HVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS--------------------  401 (524)
T ss_pred             EEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc--------------------
Confidence            999999999999999999999999999999999999999999999987665544443221                    


Q ss_pred             EEEEECccCCCCCeeEEEecCCCCCceeEEEcC---------CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSN---------DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  254 (332)
Q Consensus       184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~---------dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  254 (332)
                                             ..+..+.+||         ++..+++++.|++|++||+..|.+++.+.   -|..+|
T Consensus       402 -----------------------kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~pV  455 (524)
T KOG0273|consen  402 -----------------------KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEPV  455 (524)
T ss_pred             -----------------------cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCce
Confidence                                   1222233333         45679999999999999999999999886   467899


Q ss_pred             eEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021          255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       255 ~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      .+++|||+|+|+|+|+.||.|.||++++++.+++...- +.|..|+|+.+|..++..-+|
T Consensus       456 ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd  514 (524)
T KOG0273|consen  456 YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASD  514 (524)
T ss_pred             EEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecC
Confidence            99999999999999999999999999999998887664 458999999999888776655

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.3e-33  Score=232.56  Aligned_cols=275  Identities=16%  Similarity=0.220  Sum_probs=214.9

Q ss_pred             cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCC-Ceee-EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           32 DYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-ATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        32 ~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      ..++.|++|+||| ...+++.+|+|++||+|+++. |... +....|..+|..++|+.++..+++++   .|+++++||+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~---~Dk~~k~wDL  101 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG---CDKQAKLWDL  101 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec---cCCceEEEEc
Confidence            4568899999999 456677999999999999986 3322 34456778899999999999888875   4899999999


Q ss_pred             cCCceEEEeecccccEEEEEecCCCC--eEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEE
Q 020021          109 HDNKYLRYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRM  186 (332)
Q Consensus       109 ~~~~~~~~~~~h~~~V~~v~~~~~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  186 (332)
                      .+++ ...+..|.++|..+.|-+...  .|+|||+|++||+||++...+...+.++.+..+.--.....+.+..+..|.+
T Consensus       102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~v  180 (347)
T KOG0647|consen  102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAV  180 (347)
T ss_pred             cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEE
Confidence            9985 556778999999999987655  8999999999999999999998888887764433223344444556789999


Q ss_pred             EECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE--eeecCC---C---CCcceEEE
Q 020021          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST--YNVKPV---S---RNSTLEAS  258 (332)
Q Consensus       187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~---~---~~~~~~v~  258 (332)
                      |++++.......+.+  ...-.+++|+..+|....+.|+.+|++-|..+..+.....  |+.+..   .   ...|.+++
T Consensus       181 ynL~n~~te~k~~~S--pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  181 YNLENPPTEFKRIES--PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             EEcCCCcchhhhhcC--cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence            999764322111110  1123578899989998889999999999988877643333  332211   0   12456799


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc
Q 020021          259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       259 ~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      |+|.-..|+|++.||++..||-.....+++...|+.+|+|-+|+.+|.+++-+.
T Consensus       259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            999999999999999999999988888999899999999999999999998764

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.1e-34  Score=247.05  Aligned_cols=274  Identities=20%  Similarity=0.342  Sum_probs=228.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      .+|..|.|.|+|+.|++|+..|.+.+|+..+-.-..-+.+|+.+|..+.++.++..++++..   ++.|++|+.+-. .+
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~---gG~iKyWqpnmn-nV  172 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDK---GGMIKYWQPNMN-NV  172 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCC---CceEEecccchh-hh
Confidence            57999999999999999999999999998543333335689999999999999999998865   678999997554 35


Q ss_pred             EEeeccc-ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEcC-CCeEEEEEeCCEEEEEECc
Q 020021          115 RYFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDD-QGLVFAVAFGGYIRMFDAR  190 (332)
Q Consensus       115 ~~~~~h~-~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~i~vwd~~  190 (332)
                      +.++.|+ ..|++++|+|....|+|+|.||+|+|||....+....+..++-  .++.++| .+.+++++.|+.|++||.|
T Consensus       173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr  252 (464)
T KOG0284|consen  173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR  252 (464)
T ss_pred             HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence            5566655 8999999999888999999999999999988887777766653  3556666 5567777778999999998


Q ss_pred             cCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC-CCEEEEE
Q 020021          191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISG  269 (332)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd-g~~l~sg  269 (332)
                      +.+    .+.++.+|...|..+.|+|++.+|++++.|..++++|+++.+-+..++   .|...+++++|+|- -..|.+|
T Consensus       253 Sg~----cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r---~Hkkdv~~~~WhP~~~~lftsg  325 (464)
T KOG0284|consen  253 SGS----CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR---GHKKDVTSLTWHPLNESLFTSG  325 (464)
T ss_pred             Ccc----hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh---cchhhheeeccccccccceeec
Confidence            753    234556788889999999999999999999999999998666555555   57788999999994 5688889


Q ss_pred             cCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          270 SGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       270 s~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      +.||.|..|.+...+.+..+ .+|...|++|+|+|=|-+|++|+.|  +++|.
T Consensus       326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            99999999999855555544 6899999999999999999999998  77885

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.7e-32  Score=230.46  Aligned_cols=287  Identities=13%  Similarity=0.191  Sum_probs=231.9

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      ....+|..|+++|++++.+|+.++++|||.|-.-.+|+..+++.+..+.+|+..|.++.|+.++..++++   ++++.|+
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATG---dmsG~v~  131 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATG---DMSGKVL  131 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEec---CCCccEE
Confidence            3457899999999999999999999999999999999999999999999999999999999999988876   5688999


Q ss_pred             EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeEEE-EEeC
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA-VAFG  181 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~  181 (332)
                      ||.+.++.....+.+--+.|.-+.|+|.+..|+.|+.||.+-+|.+.++....++..+..+  +..+.|+|+.+. +..|
T Consensus       132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d  211 (399)
T KOG0296|consen  132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD  211 (399)
T ss_pred             EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence            9999999988888877788999999999999999999999999999886555565554433  335556665544 4558


Q ss_pred             CEEEEEECccCCCC------------------------------Cee---------EEEec--------CCC---CCcee
Q 020021          182 GYIRMFDARKYEKG------------------------------PFD---------IFSVG--------GDI---SDANV  211 (332)
Q Consensus       182 ~~i~vwd~~~~~~~------------------------------~~~---------~~~~~--------~~~---~~v~~  211 (332)
                      ++|++||..+...-                              ...         +....        .+.   ..+.+
T Consensus       212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~  291 (399)
T KOG0296|consen  212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES  291 (399)
T ss_pred             ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence            99999997654210                              000         00000        001   12222


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecC
Q 020021          212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS  291 (332)
Q Consensus       212 v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~  291 (332)
                      +.+|.+-.+.|+|+.||+|.|||+...++.+..    .|...|+.+.|-+ ..+|++++.||.||.||.++|+++.++.+
T Consensus       292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c----~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G  366 (399)
T KOG0296|consen  292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC----EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG  366 (399)
T ss_pred             cccccccchhhcccccceEEEEecccchhheec----cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence            334445567899999999999999876654433    4667799999988 78999999999999999999999999999


Q ss_pred             CCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          292 FDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       292 ~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      |..+|.+++++|+.++++|+|.|  .+++.
T Consensus       367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  367 HQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             CchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            99999999999999999999998  55554

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-31  Score=244.90  Aligned_cols=283  Identities=14%  Similarity=0.254  Sum_probs=234.6

Q ss_pred             HhcccceeEeccCCCcEEEEEECCCCCEEEEEeCC-CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021           21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (332)
Q Consensus        21 ~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D-~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   99 (332)
                      |.++.++..|.=-+-+|.+++|+..|++||-|+.- |.+.+|+-.+..-+-..++|-..+.+++++|+|..+++++.   
T Consensus       294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e---  370 (893)
T KOG0291|consen  294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE---  370 (893)
T ss_pred             cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC---
Confidence            46678888888777889999999999999987765 79999999876666667788889999999999999999875   


Q ss_pred             CceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc---eeEEEcCCCeEE
Q 020021          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVF  176 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~  176 (332)
                      |+.|++||..++-|+.++..|++.|+++.|+..++.++|+|.||+||.||+...++..++..+..   .+.+.++.+.++
T Consensus       371 DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV  450 (893)
T KOG0291|consen  371 DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV  450 (893)
T ss_pred             CCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence            88999999999999999999999999999999999999999999999999999888888877653   356667777665


Q ss_pred             EEE-eC-CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe-EeEEeeecCCCCCc
Q 020021          177 AVA-FG-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNS  253 (332)
Q Consensus       177 ~~~-~~-~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~  253 (332)
                      .++ .| -.|.+|++.+.+.    .--+.||.++|..++|+|+|..|++++=|++|++||+.... ...++.    ...-
T Consensus       451 ~AG~~d~F~IfvWS~qTGql----lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~----i~sd  522 (893)
T KOG0291|consen  451 CAGAQDSFEIFVWSVQTGQL----LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE----IRSD  522 (893)
T ss_pred             EeeccceEEEEEEEeecCee----eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe----eccc
Confidence            555 45 3799999876432    22356898999999999999999999999999999987542 223343    2346


Q ss_pred             ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec--------------------CCCCCCceEEeCCCeeEEEeccc
Q 020021          254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--------------------SFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--------------------~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      +..++|+|||+.||.+..||.|.+||+..+..+.++-                    .-....+.+++|+||..+.+|+.
T Consensus       523 vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~  602 (893)
T KOG0291|consen  523 VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE  602 (893)
T ss_pred             eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence            7789999999999999999999999998766553321                    12345688999999999988876


Q ss_pred             e
Q 020021          314 E  314 (332)
Q Consensus       314 d  314 (332)
                      -
T Consensus       603 s  603 (893)
T KOG0291|consen  603 S  603 (893)
T ss_pred             c
Confidence            5

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-32  Score=244.16  Aligned_cols=281  Identities=19%  Similarity=0.303  Sum_probs=238.9

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++..+.|..|+..|.+|.|+|..++++++-+.|.|.|||.++....+.+.-...+|..+.|-...+.+++++.   |..|
T Consensus         3 l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsD---D~~I   79 (794)
T KOG0276|consen    3 LDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSD---DMQI   79 (794)
T ss_pred             chhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecC---CceE
Confidence            3445667789999999999999999999999999999999999999999888888999999999999999986   8899


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCc-eEEEEEEecC--ceeEEEcCC--CeEEEE
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQG--RPAAAYDDQ--GLVFAV  178 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~~~--~~~~~~~~~--~~~~~~  178 (332)
                      |+++.++++.++.|..|.+.|++++.+|...++.|+|.|.+|++||.+.+ .|..++..+.  ....++.|+  ..+.++
T Consensus        80 rVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~  159 (794)
T KOG0276|consen   80 RVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA  159 (794)
T ss_pred             EEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence            99999999999999999999999999999999999999999999998765 3445555443  345566653  356667


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC--CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  256 (332)
                      +.|++|++|.+...    ...+.+.+|...|+++.|-+.|  .++++|++|.+|+|||..+..++++++   +|.+.+..
T Consensus       160 sLDrTVKVWslgs~----~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~  232 (794)
T KOG0276|consen  160 SLDRTVKVWSLGSP----HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSF  232 (794)
T ss_pred             eccccEEEEEcCCC----CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh---cccccceE
Confidence            78999999998753    3456677899999999997655  799999999999999999999988887   56778889


Q ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021          257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       257 v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      +.|+|.-..++|||+||++|||+-.+-+...++..--.+++|++-.++++.++.|..+
T Consensus       233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~De  290 (794)
T KOG0276|consen  233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDE  290 (794)
T ss_pred             EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence            9999999999999999999999998877766666555678888877777666666544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-32  Score=232.93  Aligned_cols=246  Identities=23%  Similarity=0.380  Sum_probs=211.5

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++...|+||++.|..|+|+..|.+|+|++.|-++++||.++ .+|++.+.+|...|.+++|.|.+..+++++.   |++|
T Consensus       141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr---D~ti  217 (406)
T KOG0295|consen  141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR---DNTI  217 (406)
T ss_pred             hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc---ccce
Confidence            34688999999999999999999999999999999999986 7888999999999999999999998887754   9999


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEE----------c-
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAY----------D-  170 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~----------~-  170 (332)
                      +.|++.++-+++++.+|..-|..++.+.||..++|+|.|.++++|-..+..|...++.+..+  +..+          . 
T Consensus       218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a  297 (406)
T KOG0295|consen  218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA  297 (406)
T ss_pred             eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence            99999999999999999999999999999999999999999999999888665555433221  1111          1 


Q ss_pred             ----CCCeEE-EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021          171 ----DQGLVF-AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       171 ----~~~~~~-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (332)
                          +++.++ .++.|++||+||+...    ...+.+.+|.+-|..++|+|.|+||+++.+|+++++||+..+++..+++
T Consensus       298 t~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  298 TGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             cCCCCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence                112344 4446999999999753    4567788999999999999999999999999999999999999988776


Q ss_pred             ecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          246 VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       246 ~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                         .|...++.++|..+--|++||+-|-++++|.-
T Consensus       374 ---ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  374 ---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ---CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence               34567788999999999999999999999963

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.9e-30  Score=227.99  Aligned_cols=294  Identities=17%  Similarity=0.262  Sum_probs=240.1

Q ss_pred             cccceeEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      +..-...+.||+..|+++.|=|..+ +++|||.|.+|-+|+-...+-..++..|..-|.++.|+|++..++++++   |+
T Consensus       136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs---Dg  212 (603)
T KOG0318|consen  136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS---DG  212 (603)
T ss_pred             CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC---Cc
Confidence            4566677999999999999988765 5999999999999998777777788888888999999999999988754   89


Q ss_pred             eeEEEEccCCceEEEee---cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc----eeEEEcCCCe
Q 020021          102 SLRLLSLHDNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR----PAAAYDDQGL  174 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~---~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~----~~~~~~~~~~  174 (332)
                      .+.+||-++++.+..+.   +|++.|.++.|+||+.+|+|+|.|+++||||..+++++.++.+...    ...+.-.+..
T Consensus       213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~  292 (603)
T KOG0318|consen  213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH  292 (603)
T ss_pred             cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence            99999999999999888   8999999999999999999999999999999999999988876543    1223334888


Q ss_pred             EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE-----------
Q 020021          175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST-----------  243 (332)
Q Consensus       175 ~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~-----------  243 (332)
                      +++++.+|+|.+++.....  +  .....||...+++++.+||+++|.+++.||+|.-||..+|..-..           
T Consensus       293 lItVSl~G~in~ln~~d~~--~--~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~  368 (603)
T KOG0318|consen  293 LITVSLSGTINYLNPSDPS--V--LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG  368 (603)
T ss_pred             EEEEEcCcEEEEecccCCC--h--hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE
Confidence            9999999999999876544  2  234457888999999999999999999999999999866532100           


Q ss_pred             e-----------------e----------------ecCCC----------------------------------CCcceE
Q 020021          244 Y-----------------N----------------VKPVS----------------------------------RNSTLE  256 (332)
Q Consensus       244 ~-----------------~----------------~~~~~----------------------------------~~~~~~  256 (332)
                      +                 +                ...++                                  .....+
T Consensus       369 ~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~  448 (603)
T KOG0318|consen  369 MAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSA  448 (603)
T ss_pred             EeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccce
Confidence            0                 0                00000                                  111235


Q ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceE--EEecCCCCCCceEEeCCCeeEEEeccc--eEEEeccccc
Q 020021          257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEV--ASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLS  323 (332)
Q Consensus       257 v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~t~~~--d~~~w~~~~~  323 (332)
                      +|++|++.++|.|+.||.++|+.+..+...  ..+..|.+++++++||||+.+|+++..  .+-+|+....
T Consensus       449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~  519 (603)
T KOG0318|consen  449 VAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASR  519 (603)
T ss_pred             EEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccC
Confidence            889999999999999999999999765543  346789999999999999999999764  4777776543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.9e-31  Score=227.07  Aligned_cols=274  Identities=22%  Similarity=0.328  Sum_probs=215.1

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCE---EEEecCCCCCceeEEEE
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT---VIYSSKNGWDESLRLLS  107 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~s~~g~d~~v~v~d  107 (332)
                      -.|.+.|++|...  +.+|+||++||++||||.. |++++++.+|..++..+++......   ++++   +.|.++++|-
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa---s~Dqtl~Lw~  175 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSA---SMDQTLRLWK  175 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEe---cCCceEEEEE
Confidence            3588999999887  6899999999999999976 8999999999999987776644433   5655   4599999999


Q ss_pred             ccCCce----EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-------------------------EEEE
Q 020021          108 LHDNKY----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-------------------------CQGL  158 (332)
Q Consensus       108 ~~~~~~----~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-------------------------~~~~  158 (332)
                      ++.+..    ++..+||...|-+++..+++.+++|||+|.+++||+..+..                         +..+
T Consensus       176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt  255 (423)
T KOG0313|consen  176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT  255 (423)
T ss_pred             ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence            887653    44456999999999999999999999999999999932110                         1111


Q ss_pred             EEec--CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc
Q 020021          159 LRVQ--GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (332)
Q Consensus       159 ~~~~--~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~  236 (332)
                      +..+  .+..+.+.+.+..++++.|.+|+.||+...... .   ... .....+++.++|...++++|+.|.+|++||.+
T Consensus       256 l~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~-~---~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR  330 (423)
T KOG0313|consen  256 LEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLK-S---TLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPR  330 (423)
T ss_pred             ecccccceeeEEEcCCCceEeecccceEEEEEeecccce-e---eee-cCcceeEeecccccceeeecCCCCceeecCCC
Confidence            1111  123567778888889999999999999764321 0   111 11357889999999999999999999999998


Q ss_pred             CCeE---eEEeeecCCCCCcceEEEECCCC-CEEEEEcCCCcEEEEECCCCc-eEEEecCCCCCCceEEeCCCeeEEEec
Q 020021          237 RGTL---LSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTG  311 (332)
Q Consensus       237 ~~~~---~~~~~~~~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~t~  311 (332)
                      ++.-   ...+.   +|.+.+..+.|+|.+ .+|++||.|+++++||+++.+ .+..+..|+..|.++.|+. +..+++|
T Consensus       331 ~~~gs~v~~s~~---gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSG  406 (423)
T KOG0313|consen  331 TGDGSVVSQSLI---GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSG  406 (423)
T ss_pred             CCCCceeEEeee---cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEec
Confidence            7632   23333   677899999999955 678899999999999999877 7889999999999999965 4588999


Q ss_pred             cceEEEec
Q 020021          312 SSELSFWI  319 (332)
Q Consensus       312 ~~d~~~w~  319 (332)
                      +.|.++..
T Consensus       407 GaD~~l~i  414 (423)
T KOG0313|consen  407 GADNKLRI  414 (423)
T ss_pred             cCcceEEE
Confidence            98855543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-32  Score=222.68  Aligned_cols=258  Identities=20%  Similarity=0.376  Sum_probs=221.7

Q ss_pred             HHHHhc---ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEe
Q 020021           18 EEILQS---MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS   94 (332)
Q Consensus        18 ~~~~~~---~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   94 (332)
                      .+||+.   .-++.+|.||.+.|.+.+++.+-..-|+++.|-+-++||.-+|..++++. |..-|..++|+.+...++.+
T Consensus        40 ~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltg  118 (334)
T KOG0278|consen   40 KPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTG  118 (334)
T ss_pred             CchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhcc
Confidence            467755   56789999999999999999988889999999999999999999998884 55678899999999999986


Q ss_pred             cCCCCCceeEEEEccCCc-eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-ceeEEEcCC
Q 020021           95 SKNGWDESLRLLSLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQ  172 (332)
Q Consensus        95 s~~g~d~~v~v~d~~~~~-~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~  172 (332)
                         |.+..+|++|++..+ +.+.+.+|.+.|..+-|+...+.++|++.|++||+||.+++.....+..+. .....++++
T Consensus       119 ---g~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~d  195 (334)
T KOG0278|consen  119 ---GQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQD  195 (334)
T ss_pred             ---chHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccC
Confidence               458899999998744 678899999999999999988999999999999999999999888887654 446778899


Q ss_pred             CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC
Q 020021          173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  252 (332)
Q Consensus       173 ~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  252 (332)
                      +.+++.+.++.|++||..++..  +..+.   -+..|.+...+|+...+++|+.|..++.||..+|+-+..+.  .+|..
T Consensus       196 G~ilTia~gssV~Fwdaksf~~--lKs~k---~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n--kgh~g  268 (334)
T KOG0278|consen  196 GRILTIAYGSSVKFWDAKSFGL--LKSYK---MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN--KGHFG  268 (334)
T ss_pred             CCEEEEecCceeEEeccccccc--eeecc---CccccccccccCCCceEEecCcceEEEEEeccCCceeeecc--cCCCC
Confidence            9999999999999999876532  22222   23467888999999999999999999999999998876652  36778


Q ss_pred             cceEEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 020021          253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV  286 (332)
Q Consensus       253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~  286 (332)
                      +|.++.|||||...|+||+||+||+|.+..++..
T Consensus       269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  269 PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            9999999999999999999999999998766543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.6e-31  Score=218.59  Aligned_cols=272  Identities=20%  Similarity=0.289  Sum_probs=208.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      +..|++|.|+|.++.|+.+++||++|+||+...+.+..+ .|..++..++|.+. ..++++   +.|+.|+.+|+++++.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G---~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTG---GLDGQVRRYDLNTGNE   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEe---ccCceEEEEEecCCcc
Confidence            567999999999999999999999999999987655555 35567888898874 355555   4589999999998764


Q ss_pred             EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCC
Q 020021          114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE  193 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~  193 (332)
                       ..+..|...|.++.+++-...++|||||++|++||.+...+...+....+..+.-..+..++.++.+..+.+||+|+..
T Consensus        88 -~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   88 -DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             -eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence             3567799999999999988899999999999999998755554443333222222234455556778999999999764


Q ss_pred             CCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC----eEeEEeeecCCC------CCcceEEEECCCC
Q 020021          194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKPVS------RNSTLEASFSPEG  263 (332)
Q Consensus       194 ~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~------~~~~~~v~~spdg  263 (332)
                      .. ++. ....-.-.++++++-|.+.-+++++.||+|.+=.....    .....|+.+...      ..+|.+++|+|--
T Consensus       167 ~~-~q~-reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~  244 (323)
T KOG1036|consen  167 EP-FQR-RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH  244 (323)
T ss_pred             ch-hhh-ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence            32 211 11111235788999999999999999999988554433    122233322111      2367789999999


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          264 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       264 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      ..+|||+.||.|.+||+.+.+.+..+...+..|..++|+-||.+|+++++
T Consensus       245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            99999999999999999999999999888888999999999999999876

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.1e-31  Score=241.83  Aligned_cols=278  Identities=18%  Similarity=0.332  Sum_probs=235.9

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      ++.||...|.+++||.+...++||+. ++++||+..+.+|++++...  .+.+.+|-|....++.+..   .+.+.++|+
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k---~Gel~vfdl  441 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTK---NGELQVFDL  441 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEecc---CCceEEEEe
Confidence            47899999999999998877777654 57999999999999999765  5778899999999999876   567999999


Q ss_pred             cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-----E---E-----EEEEec-CceeEEEcCCCe
Q 020021          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-----C---Q-----GLLRVQ-GRPAAAYDDQGL  174 (332)
Q Consensus       109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-----~---~-----~~~~~~-~~~~~~~~~~~~  174 (332)
                      .+...+.+.+.|.+.|+.++.+||++.++|||.|.+|++||+.--.     .   +     .++.+. ...++.++|++.
T Consensus       442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK  521 (888)
T ss_pred             ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence            9999889999999999999999999999999999999999964211     1   1     111221 234678889999


Q ss_pred             EEEEEe-CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021          175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (332)
Q Consensus       175 ~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (332)
                      +++++. |+++++|=+.+.+   + ..++=||.-+|.++.+|||++++++|+.|+.|++|-+.-|.+-..+-   .|...
T Consensus       522 ~LaVsLLdnTVkVyflDtlK---F-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f---AHdDS  594 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLK---F-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF---AHDDS  594 (888)
T ss_pred             EEEEEeccCeEEEEEeccee---e-eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh---cccCc
Confidence            999885 9999999765432   1 23556788899999999999999999999999999998887655543   46678


Q ss_pred             ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      +.+|.|-|+..++.|+|.|+.|+-||-.+-+.+..+.+|...|+|++.+|+|.+++++|.|  +++|.
T Consensus       595 vm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  595 VMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             eeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            8999999999999999999999999999989999999999999999999999999999998  55553

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.5e-31  Score=246.38  Aligned_cols=248  Identities=23%  Similarity=0.388  Sum_probs=205.1

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEc-CCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV-TAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      .+.+.+.+|+..|+.++|+|++.++++++.|+++||||+ ..+.+++++.+|...|..++|++.++.+++++.   |++|
T Consensus       194 ~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~---D~tv  270 (456)
T KOG0266|consen  194 NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD---DGTV  270 (456)
T ss_pred             hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecC---CCcE
Confidence            366677999999999999999999999999999999999 667999999999999999999999977777653   8999


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce--EEEEEEecC----ceeEEEcCCCeEEE
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLLRVQG----RPAAAYDDQGLVFA  177 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~  177 (332)
                      |+||++++++...+.+|.+.|++++|++++..|++++.|+.|++||..++.  +...+....    ...+.+++++.++.
T Consensus       271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll  350 (456)
T KOG0266|consen  271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL  350 (456)
T ss_pred             EEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence            999999999999999999999999999999999999999999999999988  444443322    23567778777666


Q ss_pred             EEe-CCEEEEEECccCCCCCeeEEEecCCCC---CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021          178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (332)
Q Consensus       178 ~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~---~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (332)
                      ++. |+.+++||++.....    ....++..   .+....++++|+++++++.|+.|++||..++..+..+..+.  ...
T Consensus       351 ~~~~d~~~~~w~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~--~~~  424 (456)
T KOG0266|consen  351 SASLDRTLKLWDLRSGKSV----GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS--KAA  424 (456)
T ss_pred             EecCCCeEEEEEccCCcce----eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC--CCc
Confidence            664 679999999864321    11122222   23344558899999999999999999999887777666332  567


Q ss_pred             ceEEEECCCCCEEEEEc--CCCcEEEEECC
Q 020021          254 TLEASFSPEGMFVISGS--GDGSVYAWSVR  281 (332)
Q Consensus       254 ~~~v~~spdg~~l~sgs--~Dg~i~vWd~~  281 (332)
                      +..++++|..+++++++  .|+.+++|...
T Consensus       425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            77889999999999998  78999999753

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.8e-31  Score=241.04  Aligned_cols=287  Identities=22%  Similarity=0.296  Sum_probs=241.0

Q ss_pred             hcccceeEeccCCCcEEEEEE-CCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           22 QSMEVGMSFRDYNGRISSMDF-HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~-s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      ..++..+.+.|.+++|..++| .|+.++||.++....+|+|++.+..|. -+.+|...|.++.....+..+++++.   |
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sK---D  386 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSK---D  386 (775)
T ss_pred             cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecC---C
Confidence            457888899999999999999 588899999999999999999988886 78899999998887777777777765   9


Q ss_pred             ceeEEEEccCCce----EEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEE---EEEE--------ecCc
Q 020021          101 ESLRLLSLHDNKY----LRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQ---GLLR--------VQGR  164 (332)
Q Consensus       101 ~~v~v~d~~~~~~----~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~---~~~~--------~~~~  164 (332)
                      +++++|.++++..    +....||++.|.+++++..+ .+|+|+|.|.++++|++...+..   ..+.        ....
T Consensus       387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI  466 (775)
T KOG0319|consen  387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI  466 (775)
T ss_pred             ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence            9999998855442    44567999999999997643 59999999999999998652211   1111        1123


Q ss_pred             eeEEEcCCCeEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE
Q 020021          165 PAAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST  243 (332)
Q Consensus       165 ~~~~~~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~  243 (332)
                      +++.+.|+..+++ ++.|.+.++|++.+..    ....+.||.-.+-+|.|+|..+.+++++.|++|+||.+.+..++.+
T Consensus       467 N~Vaia~ndkLiAT~SqDktaKiW~le~~~----l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT  542 (775)
T KOG0319|consen  467 NCVAIAPNDKLIATGSQDKTAKIWDLEQLR----LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT  542 (775)
T ss_pred             cceEecCCCceEEecccccceeeecccCce----EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee
Confidence            5667777666555 5568999999997321    2345678989999999999999999999999999999999999999


Q ss_pred             eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      ++   +|...|.++.|-.+|.+|+|+++||-|++|++.+.+++.++-.|+..|+.++-+|...+++||+.|  +.+|-
T Consensus       543 ~e---GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  543 FE---GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ec---CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            98   677889999999999999999999999999999999999999999999999999999999999998  55563

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.8e-32  Score=226.35  Aligned_cols=283  Identities=19%  Similarity=0.346  Sum_probs=234.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee--------ecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--------SKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      |....+.|..|||||+||+|||.||.|-+||..+|+..+.++        .+..+|.+++|+.+...+++++.   |+.|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq---DGkI  287 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ---DGKI  287 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc---CCcE
Confidence            344568899999999999999999999999999998765443        34567899999999998887764   8899


Q ss_pred             EEEEccCCceEEEee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCC-eEEEEE
Q 020021          104 RLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVA  179 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~  179 (332)
                      ++|.+.+|.|++.|. .|+..|+++.|+.|+..+.|+|.|.++|+--+++++++..++.+.  .+-+.+.++| .+++++
T Consensus       288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS  367 (508)
T KOG0275|consen  288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS  367 (508)
T ss_pred             EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence            999999999999887 899999999999999999999999999999999999988887653  3445666655 678888


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~  258 (332)
                      .||+|++|+.++.+  -...+...+...+++.+..-|.. ..++++...++++|.++. |+.++.+....-..+...+++
T Consensus       368 sDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~  444 (508)
T KOG0275|consen  368 SDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI  444 (508)
T ss_pred             CCccEEEecCcchh--hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence            99999999987532  22234444455577888777755 578888889999999975 788887764333345566788


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       259 ~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      .||.|.++.+.++|+.+++|.+.+|+.-.+++.|...+-.++-+|-.+++++-+.|  +++|.|
T Consensus       445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp  508 (508)
T KOG0275|consen  445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP  508 (508)
T ss_pred             ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence            99999999999999999999999999999999999999999999999999999998  666643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.5e-32  Score=237.93  Aligned_cols=257  Identities=20%  Similarity=0.322  Sum_probs=206.9

Q ss_pred             eeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEE
Q 020021           13 SLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI   92 (332)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (332)
                      .++||+.. .+.+++++|.||+.+|..++|+++|..++|+|.|+++++||+++|.|+..+.... .+.++.|+|++..++
T Consensus       238 ~vklW~vy-~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~-~~~cvkf~pd~~n~f  315 (503)
T KOG0282|consen  238 LVKLWNVY-DDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK-VPTCVKFHPDNQNIF  315 (503)
T ss_pred             eEEEEEEe-cCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC-CceeeecCCCCCcEE
Confidence            45666543 3688999999999999999999999999999999999999999999998886543 467889999995544


Q ss_pred             EecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE---ecCceeEEE
Q 020021           93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAY  169 (332)
Q Consensus        93 ~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~~~~~~~~~  169 (332)
                      .+  ++.|+.|+.||+.+++.++.+..|.+.|..+.|-++|++|+|.+.|++++||+.+.+-.+..+.   ....+++..
T Consensus       316 l~--G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~  393 (503)
T KOG0282|consen  316 LV--GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTL  393 (503)
T ss_pred             EE--ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceec
Confidence            43  2458999999999999999999999999999999999999999999999999998776554432   234466677


Q ss_pred             cCCCeEEE-EEeCCEEEEEECccCC----CCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe
Q 020021          170 DDQGLVFA-VAFGGYIRMFDARKYE----KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (332)
Q Consensus       170 ~~~~~~~~-~~~~~~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (332)
                      +|.+..++ -+.|+.|.++.+....    ...+.-..++|   -...|.|||||++|++|+.||.+.+||..+.+++..+
T Consensus       394 ~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG---ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l  470 (503)
T KOG0282|consen  394 HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG---YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL  470 (503)
T ss_pred             CCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC---ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc
Confidence            77666554 4568999999754221    11121112222   3456899999999999999999999999988877766


Q ss_pred             eecCCCCCcceEEEECCC-CCEEEEEcCCCcEEEEE
Q 020021          245 NVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWS  279 (332)
Q Consensus       245 ~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd  279 (332)
                      .   .|..+++.+.|+|. -..+||++.||.|++||
T Consensus       471 k---ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  471 K---AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             c---cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            5   45688899999995 46899999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=9.1e-32  Score=217.79  Aligned_cols=281  Identities=17%  Similarity=0.313  Sum_probs=229.7

Q ss_pred             ceeEeccCCCcEEEEEEC---CCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021           26 VGMSFRDYNGRISSMDFH---KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s---~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~  102 (332)
                      ...++.||+.+|-.++||   |+|-+|++++.|+.-.+-+-++|.=+-++.+|...|...++..+...-++++   .|-+
T Consensus         6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaa---adft   82 (334)
T KOG0278|consen    6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAA---ADFT   82 (334)
T ss_pred             CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhc---ccch
Confidence            346789999999999998   6899999999999999999999999999999999999999888876655554   3889


Q ss_pred             eEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE-EEEec--CceeEEE-cCCCeEEEE
Q 020021          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQ--GRPAAAY-DDQGLVFAV  178 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~-~~~~~--~~~~~~~-~~~~~~~~~  178 (332)
                      .++||.-+|..++.|. |+.-|.+++|+.|.++|+||++++.+|++|++..+... .+..+  +.-.+.+ ..+..++++
T Consensus        83 akvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence            9999999998888886 88999999999999999999999999999987654221 22111  1112233 445667777


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~  258 (332)
                      +.|++||+||.|+...    +.++. -..+++++.+|+||+++..+ ..+.|..||..+-.++..+...    ..|.+..
T Consensus       162 add~tVRLWD~rTgt~----v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P----~nV~SAS  231 (334)
T KOG0278|consen  162 ADDKTVRLWDHRTGTE----VQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP----CNVESAS  231 (334)
T ss_pred             ccCCceEEEEeccCcE----EEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc----ccccccc
Confidence            8899999999987542    11221 12578999999999976554 5568999999988888877642    3456778


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       259 ~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      ++|+-.++++|++|..++.||..+++.+..+ ..|.++|.||.|+|||...++||.|  +++|..
T Consensus       232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence            9999999999999999999999999999886 8999999999999999999999999  666653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=8.1e-31  Score=243.28  Aligned_cols=261  Identities=21%  Similarity=0.329  Sum_probs=198.4

Q ss_pred             ceeEecHHHHhc-----ccceeEec-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC-------------------
Q 020021           12 VSLELSEEILQS-----MEVGMSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-------------------   66 (332)
Q Consensus        12 ~~~~~~~~~~~~-----~~~~~~l~-~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~-------------------   66 (332)
                      -.++++...+..     +...+.+. +|.++|.++.||+||+||||||.|+.||||.+..-                   
T Consensus       239 ~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~  318 (712)
T KOG0283|consen  239 SRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNA  318 (712)
T ss_pred             ceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhh
Confidence            344555554422     33344466 89999999999999999999999999999987440                   


Q ss_pred             -----------------------------------------eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           67 -----------------------------------------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        67 -----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                                                               +.++.+.+|...|..+.|+.++ +++++   ++|.+|||
T Consensus       319 ~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSS---SMDKTVRL  394 (712)
T KOG0283|consen  319 NSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSS---SMDKTVRL  394 (712)
T ss_pred             ccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEec---cccccEEe
Confidence                                                     0112345666667778887664 45554   36999999


Q ss_pred             EEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEE
Q 020021          106 LSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI  184 (332)
Q Consensus       106 ~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  184 (332)
                      |++...+++++|. |.+.|+||+|+| |.++|+|||-|+.||||++...+                             |
T Consensus       395 Wh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-----------------------------V  444 (712)
T KOG0283|consen  395 WHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-----------------------------V  444 (712)
T ss_pred             ecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe-----------------------------e
Confidence            9999999999987 999999999999 88899999999999999985443                             2


Q ss_pred             EEE-ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC-----CCCcceEEE
Q 020021          185 RMF-DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----SRNSTLEAS  258 (332)
Q Consensus       185 ~vw-d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~v~  258 (332)
                      -.| |++                .-|++++|+|||++.++|+.+|.+++|+....++...+.....     ....|+.+-
T Consensus       445 v~W~Dl~----------------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q  508 (712)
T KOG0283|consen  445 VDWNDLR----------------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ  508 (712)
T ss_pred             Eeehhhh----------------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE
Confidence            233 222                2478999999999999999999999999987777655543211     123678887


Q ss_pred             ECCCC-CEEEEEcCCCcEEEEECCCCceEEEecCCCCC--CceEEeCCCeeEEEeccce--EEEecccc
Q 020021          259 FSPEG-MFVISGSGDGSVYAWSVRSGKEVASWMSFDTE--PPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       259 ~spdg-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                      |.|.. ..++..+.|..|||+|..+.+.+..++++...  -..-+|+.||+++++++.|  +.+|..+.
T Consensus       509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  509 FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            77643 35777889999999999888888888765432  2446699999999999988  67776543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.98  E-value=3.8e-32  Score=233.28  Aligned_cols=264  Identities=18%  Similarity=0.318  Sum_probs=218.5

Q ss_pred             CCCCCccccccceeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeeccccee
Q 020021            1 MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD   80 (332)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~   80 (332)
                      |+|+|++|     +.||+-  .++.....+.+|..+|.++.|+++|.+++||..||.||+|+.+.....-....|...|.
T Consensus       112 ltgs~SGE-----FtLWNg--~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIR  184 (464)
T KOG0284|consen  112 LTGSQSGE-----FTLWNG--TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIR  184 (464)
T ss_pred             Eeeccccc-----EEEecC--ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhh
Confidence            57889886     788886  45555566899999999999999999999999999999999876554433344457899


Q ss_pred             EEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE
Q 020021           81 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR  160 (332)
Q Consensus        81 ~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~  160 (332)
                      .++|+|....+++++.   |++|++||....+.-..+.||.-.|.+++|+|....++|+|.|..|++||.+++.|+.++.
T Consensus       185 dlafSpnDskF~t~Sd---Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh  261 (464)
T KOG0284|consen  185 DLAFSPNDSKFLTCSD---DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH  261 (464)
T ss_pred             eeccCCCCceeEEecC---CCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh
Confidence            9999998888888875   8999999998888888899999999999999999999999999999999999999988776


Q ss_pred             ecCc--eeEEEcCCCe-EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEcc
Q 020021          161 VQGR--PAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSF  236 (332)
Q Consensus       161 ~~~~--~~~~~~~~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~  236 (332)
                      .+..  ..+.+.+.+. +++++.|..++++|+|..+    +.+...+|...+.+++++|-. .++.+++.||.|..|.+.
T Consensus       262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk----El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK----ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH----HHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence            5543  3456666554 5556678999999999543    234455777889999999955 677889999999999987


Q ss_pred             CCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          237 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      .-+.+..  ..+.|...|++++|+|=|..|++|+.|.+++.|.-
T Consensus       338 ~~~p~~~--i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  338 LEEPLGE--IPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             ccccccC--CCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            4444433  33567889999999999999999999999999965

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.98  E-value=2.6e-30  Score=227.82  Aligned_cols=297  Identities=17%  Similarity=0.289  Sum_probs=218.4

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCee----eEEe-eecccceeEEEEccCC
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC----LKTI-NSKKYGVDLVCFTSHP   88 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~----~~~~-~~~~~~v~~~~~~~~~   88 (332)
                      ++..+|+.        |++|+..|+++++.|.|..++|||.|.+|++||+.....    .+.+ ......+.++.|++.+
T Consensus       155 IP~shEi~--------l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg  226 (641)
T KOG0772|consen  155 IPGSHEIQ--------LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG  226 (641)
T ss_pred             CCccceEe--------ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC
Confidence            55555555        999999999999999999999999999999999974322    1222 2334568899999999


Q ss_pred             CEEEEecCCCCCceeEEEEccCCc---------eE---EEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceE
Q 020021           89 TTVIYSSKNGWDESLRLLSLHDNK---------YL---RYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKC  155 (332)
Q Consensus        89 ~~~~~~s~~g~d~~v~v~d~~~~~---------~~---~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~  155 (332)
                      ..+++.+.   ..+.+|+|-...+         ++   ..-+||...+++.+|+|+.+ .|+|+|.||++|+||....+.
T Consensus       227 ~~iLvvsg---~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~  303 (641)
T KOG0772|consen  227 DQILVVSG---SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS  303 (641)
T ss_pred             CeEEEEec---CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence            98887763   4578888865433         22   23468999999999999654 899999999999999865432


Q ss_pred             -EEEEEecC-------ceeEEEcCCCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCC-CCCceeEEEcCCCCEEEEEc
Q 020021          156 -QGLLRVQG-------RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTT  225 (332)
Q Consensus       156 -~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~v~~s~dg~~l~~~~  225 (332)
                       ..+++...       ...+.+++++..++++ .||.|.+|+.+.....+...+..+.. ..++++++||+||++|++.+
T Consensus       304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence             33443211       2356778877666655 68999999987654333333332222 23899999999999999999


Q ss_pred             CCCeEEEEEccCCe-EeEEeeecCCCCCcceEEEECCCCCEEEEEcC------CCcEEEEECCCCceEEEecCCCCCCce
Q 020021          226 MEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSG------DGSVYAWSVRSGKEVASWMSFDTEPPV  298 (332)
Q Consensus       226 ~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~------Dg~i~vWd~~~~~~~~~~~~~~~~v~~  298 (332)
                      .|+++++||++..+ .+.....-+ ....-+.++||||.+.|++|+.      .|++.++|..+-..+..+.-.++.|..
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~  462 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVR  462 (641)
T ss_pred             CCCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEE
Confidence            99999999998643 333332211 1223457899999999999964      568999999988888877666778888


Q ss_pred             EEeCCCeeEEEeccce---EEEecccc
Q 020021          299 IKWTPGSLMFVTGSSE---LSFWIPDL  322 (332)
Q Consensus       299 l~~sp~~~~l~t~~~d---~~~w~~~~  322 (332)
                      +.|+|--+++..+++|   .-++++..
T Consensus       463 ~~WhpkLNQi~~gsgdG~~~vyYdp~~  489 (641)
T KOG0772|consen  463 CLWHPKLNQIFAGSGDGTAHVYYDPNE  489 (641)
T ss_pred             EeecchhhheeeecCCCceEEEECccc
Confidence            9999998888877776   23345543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.3e-30  Score=231.01  Aligned_cols=244  Identities=20%  Similarity=0.273  Sum_probs=211.7

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      +..+++|.--+-||.+..|-+..+++++|++|..||||+.++++.++++.+|..-+.+++.+|..+.++++|.   |.+|
T Consensus        45 qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD---Dm~i  121 (794)
T KOG0276|consen   45 QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD---DMTI  121 (794)
T ss_pred             ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCC---ccEE
Confidence            5677888888899999999999999999999999999999999999999999999999999999999998875   8899


Q ss_pred             EEEEccCC-ceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcCCC---eEE
Q 020021          104 RLLSLHDN-KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQG---LVF  176 (332)
Q Consensus       104 ~v~d~~~~-~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~---~~~  176 (332)
                      ++||.+.+ .+.+++.||...|++++|.| |.+.|||+|-|+||++|.+.+..+..++..+  +.+++.+-+.+   .++
T Consensus       122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI  201 (794)
T KOG0276|consen  122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI  201 (794)
T ss_pred             EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence            99999875 46789999999999999999 7889999999999999999999888888654  55667665544   788


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  256 (332)
                      +++.|.++++||..+..    .+..+.||...++.+.|.|.-.++++|+.||+++||...+-++..+++.   .-..+++
T Consensus       202 sgaDD~tiKvWDyQtk~----CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~---gleRvW~  274 (794)
T KOG0276|consen  202 SGADDLTIKVWDYQTKS----CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY---GLERVWC  274 (794)
T ss_pred             ecCCCceEEEeecchHH----HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc---CCceEEE
Confidence            88889999999986521    2335678888999999999999999999999999999888777776663   3467888


Q ss_pred             EEECCCCCEEEEEcCCCcEEE
Q 020021          257 ASFSPEGMFVISGSGDGSVYA  277 (332)
Q Consensus       257 v~~spdg~~l~sgs~Dg~i~v  277 (332)
                      ++-.+.++.++.|.++|.|.+
T Consensus       275 I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  275 IAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             EeecCCCCeEEEeccCCcEEE
Confidence            888898889999988886644

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=7.9e-32  Score=227.30  Aligned_cols=267  Identities=15%  Similarity=0.312  Sum_probs=205.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~  112 (332)
                      -.+.|.|+.++  ...+++|..|+||+|||.++..|++.+.+|...|.++.+  +...++++++   |.+|++||+++++
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSS---DsTvrvWDv~tge  268 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSS---DSTVRVWDVNTGE  268 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCC---CceEEEEeccCCc
Confidence            44778999886  468999999999999999999999999999887765544  5556777765   8899999999999


Q ss_pred             eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEE---EEEEec--CceeEEEcCCCeEEEEEeCCEEEEE
Q 020021          113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ---GLLRVQ--GRPAAAYDDQGLVFAVAFGGYIRMF  187 (332)
Q Consensus       113 ~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~vw  187 (332)
                      ++.++-+|...|..+.|+.  .+++|+|.|.+|.+||+.+..-+   ..+..+  ..+.+.|+ +..+++++.|.+|++|
T Consensus       269 ~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd-~kyIVsASgDRTikvW  345 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVW  345 (499)
T ss_pred             hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc-cceEEEecCCceEEEE
Confidence            9999999999999999974  78999999999999999765421   122222  12223333 3366667789999999


Q ss_pred             ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEE
Q 020021          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (332)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~  267 (332)
                      ++.+..   + +-.+.+|.-.+-+  .-..|+++++|+.|.+|++||+..|.++..++   +|..-+.++.|  |.+.++
T Consensus       346 ~~st~e---f-vRtl~gHkRGIAC--lQYr~rlvVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRF--d~krIV  414 (499)
T KOG0281|consen  346 STSTCE---F-VRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNKRIV  414 (499)
T ss_pred             ecccee---e-ehhhhccccccee--hhccCeEEEecCCCceEEEEeccccHHHHHHh---chHHhhhheee--cCceee
Confidence            986532   1 1234455555443  34578999999999999999999999988776   56667777888  889999


Q ss_pred             EEcCCCcEEEEECCCCce---------EEEecCCCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          268 SGSGDGSVYAWSVRSGKE---------VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       268 sgs~Dg~i~vWd~~~~~~---------~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                      +|+.||.|+|||+.++..         +.++..|++.|..+.|  |..++++.+-|  +.+|+-..
T Consensus       415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN  478 (499)
T ss_pred             eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence            999999999999987653         3345678888988888  44566666544  88887543

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.8e-29  Score=233.24  Aligned_cols=230  Identities=15%  Similarity=0.198  Sum_probs=177.2

Q ss_pred             EeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-------eeeEEeeecccceeEEEEccCCC-EEEEecCCCC
Q 020021           29 SFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGW   99 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~   99 (332)
                      .|.||++.|.+++|+| ++++|+||+.|++|+|||+.++       +++..+.+|...|..++|+|.+. .+++++   .
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs---~  146 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG---A  146 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe---C
Confidence            5889999999999999 8899999999999999999764       35677889999999999999865 555553   4


Q ss_pred             CceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEE
Q 020021          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  179 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (332)
                      |++|++||+++++.+..+.+|.+.|.+++|+|+++.|++++.|++|++||+++++....+..+..               
T Consensus       147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~---------------  211 (493)
T PTZ00421        147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS---------------  211 (493)
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC---------------
Confidence            89999999999999999999999999999999999999999999999999988765433221100               


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc----CCCeEEEEEccCCeE-eEEeeecCCCCCcc
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT----MEGHIHVLDSFRGTL-LSTYNVKPVSRNST  254 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~  254 (332)
                                                 .....+.+++++..+++++    .|+.|++||+++... +.....  .....+
T Consensus       212 ---------------------------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~--d~~~~~  262 (493)
T PTZ00421        212 ---------------------------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL--DQSSAL  262 (493)
T ss_pred             ---------------------------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc--CCCCce
Confidence                                       0122355667766666543    478999999876542 222221  122334


Q ss_pred             eEEEECCCCCEEEEEc-CCCcEEEEECCCCceEEEec-CCCCCCceEEeCCCe
Q 020021          255 LEASFSPEGMFVISGS-GDGSVYAWSVRSGKEVASWM-SFDTEPPVIKWTPGS  305 (332)
Q Consensus       255 ~~v~~spdg~~l~sgs-~Dg~i~vWd~~~~~~~~~~~-~~~~~v~~l~~sp~~  305 (332)
                      ....|+||+++|++|+ .|+.|++||+.+++.+.... .+..++..++|.|..
T Consensus       263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            4567999999999987 49999999999988766543 244567788888854

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5.8e-29  Score=203.28  Aligned_cols=278  Identities=17%  Similarity=0.219  Sum_probs=221.9

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      |.||+.+++.|.|+.+|.+|+|++.|.++.+|=..+|+.+-++.+|...|.++...-+.+.+++++.   |+++++||++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSA---D~t~kLWDv~   82 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA---DQTAKLWDVE   82 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccc---cceeEEEEcC
Confidence            7899999999999999999999999999999999999999999999999999999999999998875   9999999999


Q ss_pred             CCceEEEeecccccEEEEEecCCCCeEEEeeC-----CCcEEEEeCC-------CceEEEEEEecC--ceeEEEcCCC-e
Q 020021          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-----DRTVLLWDQR-------AEKCQGLLRVQG--RPAAAYDDQG-L  174 (332)
Q Consensus       110 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-----Dg~i~iWd~~-------~~~~~~~~~~~~--~~~~~~~~~~-~  174 (332)
                      +|+++..++ -..+|..+.|+++|++++....     -+.|.++|++       .+.+...+..+.  ...+.+.+.+ .
T Consensus        83 tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   83 TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence            999988877 4578999999999987766543     3578899987       333333333322  2345666654 5


Q ss_pred             EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021          175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  254 (332)
Q Consensus       175 ~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  254 (332)
                      ++++..+|.|..||+++..   ..+.+...|...++.+.+|+|.+++++++.|.+.++||..+-+++.++..    ..++
T Consensus       162 ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t----e~Pv  234 (327)
T KOG0643|consen  162 IIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT----ERPV  234 (327)
T ss_pred             EEEecCCCcEEEEEcccCc---eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee----cccc
Confidence            6667789999999998642   22223344556899999999999999999999999999999999988863    4678


Q ss_pred             eEEEECCCCCEEEEEcCCCcEEEEEC--CCCc------------eEEEecCCCCCCceEEeCCCeeEEEeccce--EEEe
Q 020021          255 LEASFSPEGMFVISGSGDGSVYAWSV--RSGK------------EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW  318 (332)
Q Consensus       255 ~~v~~spdg~~l~sgs~Dg~i~vWd~--~~~~------------~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w  318 (332)
                      ++.+++|-..+++.|+--...-|=-.  +.++            .+...++|-++|++|+|||+|+..++|+.|  +++.
T Consensus       235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence            88999998888888865433322211  1122            244557899999999999999999999998  5543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.1e-29  Score=205.23  Aligned_cols=275  Identities=14%  Similarity=0.230  Sum_probs=217.2

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEE--eeecccceeEEEEccCCC-EEEEecCCCCCceeE
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLR  104 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~v~  104 (332)
                      +.+.+|.+.|.+|+|+.+|..|++|+.|+++++|+++....+..  +.+|...|.-+|+.|... .+++++.   |.+|+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---dk~ir   90 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---DKTIR   90 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC---CceEE
Confidence            66889999999999999999999999999999999987755543  456776777777776555 4555443   78999


Q ss_pred             EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEEe-CC
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAF-GG  182 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~  182 (332)
                      +||+.+++++.........|. +.|+|+|.+++.++.|-.|.+.|.++.+.....+.... ....+..++.+|.... .|
T Consensus        91 ~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             EEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence            999999999887765555554 58999999999999999999999988776655544322 2334444454444444 48


Q ss_pred             EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      +|.|......+  +  ..++..|++...++.|+|+|+++++|+.|-.+.+||+...-+++.+.   -+.-+|..+.||.|
T Consensus       170 ~v~ILsypsLk--p--v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~d  242 (313)
T KOG1407|consen  170 CVEILSYPSLK--P--VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHD  242 (313)
T ss_pred             eEEEEeccccc--c--ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cccCceEEEEeccC
Confidence            99888765432  1  23444567788899999999999999999999999987655554443   24567889999999


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021          263 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      |++||+||+|..|-|=++++|..+..+. +.++...|+|+|...+|+-+++|
T Consensus       243 g~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  243 GRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            9999999999999999999999998864 56788999999999999988764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.4e-30  Score=235.07  Aligned_cols=270  Identities=19%  Similarity=0.351  Sum_probs=221.3

Q ss_pred             CccccccceeEecHHHHhcccceeEeccCCCcEE---EEEEC-CCCCEEEEEeCCCcEEEEEcCCCe------eeEEeee
Q 020021            5 QSEREDKVSLELSEEILQSMEVGMSFRDYNGRIS---SMDFH-KSSSYLVTASDDESIRLYDVTAAT------CLKTINS   74 (332)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~---~i~~s-~dg~~l~tgs~D~tv~iwd~~~~~------~~~~~~~   74 (332)
                      |...+.||++.++++--+         .|...|.   ++..+ |.++||+|||.|++||+|++..-.      ++..++.
T Consensus         1 ~~rkk~kvsyVi~D~~e~---------qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~   71 (735)
T KOG0308|consen    1 QTRKKKKVSYVIRDENEK---------QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH   71 (735)
T ss_pred             CCcceeEEEEEccchhhh---------hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh
Confidence            456789999999999875         4555565   66666 456779999999999999986322      4667888


Q ss_pred             cccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC--ceEEEeecccccEEEEEe-cCCCCeEEEeeCCCcEEEEeCC
Q 020021           75 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYLRYFKGHHDRVVSLSL-CSSKDCFISGSLDRTVLLWDQR  151 (332)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~--~~~~~~~~h~~~V~~v~~-~~~~~~l~s~s~Dg~i~iWd~~  151 (332)
                      |..+|..+....+++.++++|+   |-+|++|+.+.+  -+..+++.|.+.|.++++ .++...+||||-|+.|.+||++
T Consensus        72 HsDWVNDiiL~~~~~tlIS~Ss---DtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin  148 (735)
T KOG0308|consen   72 HSDWVNDIILCGNGKTLISASS---DTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN  148 (735)
T ss_pred             hHhHHhhHHhhcCCCceEEecC---CceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence            9999999888889988888875   889999999877  578889999999999999 6678899999999999999998


Q ss_pred             CceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEec-CCCCCceeEEEcCCCCEEEEEcCCCeE
Q 020021          152 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHI  230 (332)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~v~~s~dg~~l~~~~~dg~i  230 (332)
                      ++...  +..                 ++ +.+             ...++. |+...+.+++.++.|..+++|+.++.+
T Consensus       149 ~~~~~--l~~-----------------s~-n~~-------------t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l  195 (735)
T KOG0308|consen  149 TGTAT--LVA-----------------SF-NNV-------------TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL  195 (735)
T ss_pred             Ccchh--hhh-----------------hc-ccc-------------ccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence            76320  000                 00 000             011112 555678899999999999999999999


Q ss_pred             EEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEe
Q 020021          231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT  310 (332)
Q Consensus       231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t  310 (332)
                      ++||.++++.+..+.   +|...|..+..++||+.++|+|.||+|++||+.-.+++.++..|...|+++.-+|+-..+-+
T Consensus       196 r~wDprt~~kimkLr---GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs  272 (735)
T KOG0308|consen  196 RLWDPRTCKKIMKLR---GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS  272 (735)
T ss_pred             EEeccccccceeeee---ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence            999999999888777   57788888999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEecccc
Q 020021          311 GSSELSFWIPDL  322 (332)
Q Consensus       311 ~~~d~~~w~~~~  322 (332)
                      |+.|..+..-++
T Consensus       273 G~rd~~i~~Tdl  284 (735)
T KOG0308|consen  273 GGRDGNIYRTDL  284 (735)
T ss_pred             cCCCCcEEeccc
Confidence            999866554333

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=4.2e-29  Score=207.08  Aligned_cols=249  Identities=16%  Similarity=0.267  Sum_probs=200.9

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      +=...+++|.++|..+.|.+|++.|+++|.|++++.||.++|++++..+.|..-|..+.-..-+..++.+.+  -|+++|
T Consensus        81 eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgs--dD~t~k  158 (338)
T KOG0265|consen   81 ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGS--DDGTLK  158 (338)
T ss_pred             cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecC--CCceEE
Confidence            445678899999999999999999999999999999999999999999999988888886666777776543  489999


Q ss_pred             EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCC-CeEEEEEeC
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQ-GLVFAVAFG  181 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~  181 (332)
                      |||+....+++++. .+-+++++.|..++..+.+|+-|+.|++||++.+.+..++..+..+  ....++. ..+++-+.|
T Consensus       159 l~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd  237 (338)
T KOG0265|consen  159 LWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD  237 (338)
T ss_pred             EEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc
Confidence            99998877777664 3567899999999999999999999999999988887777655433  3344444 456666779


Q ss_pred             CEEEEEECccCCCCCe--eEEEecCCC--CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021          182 GYIRMFDARKYEKGPF--DIFSVGGDI--SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~--~~~~~~~~~--~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v  257 (332)
                      .++++||+|-+-....  .++.-+.|.  .....+++||+++.+.+++.|+.+++||......+..+   ++|...|+++
T Consensus       238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl---pGh~gsvn~~  314 (338)
T KOG0265|consen  238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL---PGHYGSVNEV  314 (338)
T ss_pred             ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc---CCcceeEEEe
Confidence            9999999997654322  233222221  13456889999999999999999999998776655444   4778899999


Q ss_pred             EECCCCCEEEEEcCCCcEEEEE
Q 020021          258 SFSPEGMFVISGSGDGSVYAWS  279 (332)
Q Consensus       258 ~~spdg~~l~sgs~Dg~i~vWd  279 (332)
                      .|+|...+|.+++.|++|++=+
T Consensus       315 ~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  315 DFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             eecCCCcEEEEeccCceeEeec
Confidence            9999999999999999998743

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.8e-30  Score=219.04  Aligned_cols=253  Identities=19%  Similarity=0.293  Sum_probs=199.3

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY   93 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (332)
                      +++|+.  .+.+..+.|.||+|+|.|+.|..  +.|+|||.|.||+|||++++++++++..|-..|.-+.|+.  ..+++
T Consensus       219 ikiWD~--n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvt  292 (499)
T KOG0281|consen  219 IKIWDK--NSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVT  292 (499)
T ss_pred             eEEecc--ccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEE
Confidence            445542  45677788999999999999974  5999999999999999999999999999988887777764  47788


Q ss_pred             ecCCCCCceeEEEEccCCc---eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEc
Q 020021           94 SSKNGWDESLRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD  170 (332)
Q Consensus        94 ~s~~g~d~~v~v~d~~~~~---~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~  170 (332)
                      ++.   |.++++||+....   +.+.+.||.+.|+.++|..  ++++|+|.|.||++|++.+..++.++..+..-.++..
T Consensus       293 cSk---DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ  367 (499)
T KOG0281|consen  293 CSK---DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ  367 (499)
T ss_pred             ecC---CceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehh
Confidence            775   8999999998754   3457889999999999864  6999999999999999999999988877665555555


Q ss_pred             CCC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe-----
Q 020021          171 DQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY-----  244 (332)
Q Consensus       171 ~~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~-----  244 (332)
                      ..+ .++++++|.+||+||+....-    .--++||..-+.++.|  |.+.+++|+-||+|++||+..+......     
T Consensus       368 Yr~rlvVSGSSDntIRlwdi~~G~c----LRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~C  441 (499)
T KOG0281|consen  368 YRDRLVVSGSSDNTIRLWDIECGAC----LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLC  441 (499)
T ss_pred             ccCeEEEecCCCceEEEEeccccHH----HHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchH
Confidence            444 566677899999999875321    1224567667888888  4678999999999999998765432111     


Q ss_pred             -eecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          245 -NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       245 -~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                       .....|.+.+..+-|  |...+++.+.|.+|-|||..++..
T Consensus       442 l~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  442 LRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             HHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence             001234567777777  788999999999999999987654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-28  Score=205.77  Aligned_cols=286  Identities=18%  Similarity=0.274  Sum_probs=211.2

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCee-----eE-EeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-----LK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~-----~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      ..+|+||.+.|++++|+.||++|||++.|++||||++.+.+.     ++ +++.  ...+.+.|.|+...++....+  .
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~--g  154 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKR--G  154 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEcc--C
Confidence            356899999999999999999999999999999999976432     11 1221  135788999999988777654  3


Q ss_pred             ceeEEEEccC---CceE---------EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--cee
Q 020021          101 ESLRLLSLHD---NKYL---------RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPA  166 (332)
Q Consensus       101 ~~v~v~d~~~---~~~~---------~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~  166 (332)
                      +++++|-+.-   |...         ..-+-|+-.|..+-....+++++|++.|-+|.+||++ ++.+..+....  ..-
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~  233 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD  233 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence            6888887632   2221         1123466677777777888999999999999999998 66665554332  223


Q ss_pred             EEEcCCCeEEE-EEeCCEEEEEECccCCCCCee----EEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC----
Q 020021          167 AAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFD----IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----  237 (332)
Q Consensus       167 ~~~~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~----~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~----  237 (332)
                      +..+|+|++++ +++.-.|++|.+-..+.+.++    .+.+.||.+.|...+||++.+.+++.+.||++++||..-    
T Consensus       234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence            56677776554 557888999997655555443    567889999999999999999999999999999999742    


Q ss_pred             ---CeEeEEeeec-CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEecc
Q 020021          238 ---GTLLSTYNVK-PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       238 ---~~~~~~~~~~-~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                         .+.+.++... ........+++.||.|+.||.. ...++.++..++++...++ ..|...|.+++|+|+|++++|++
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence               1222222110 0112233479999999998865 4567999999998876665 46888999999999999999987


Q ss_pred             ce-EEEe
Q 020021          313 SE-LSFW  318 (332)
Q Consensus       313 ~d-~~~w  318 (332)
                      .- +++.
T Consensus       393 dr~vrv~  399 (420)
T KOG2096|consen  393 DRYVRVI  399 (420)
T ss_pred             ceeeeee
Confidence            64 5443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=9e-29  Score=231.30  Aligned_cols=252  Identities=21%  Similarity=0.363  Sum_probs=201.4

Q ss_pred             cceeE-eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           25 EVGMS-FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        25 ~~~~~-l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      .+..+ |.||.+.|.+++|..-+++|++|+.|+|+|+||..+|.|.+.+.+|...+.++..  .+..++.+   ++|++|
T Consensus       239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sg---s~D~tV  313 (537)
T KOG0274|consen  239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSG---SRDNTV  313 (537)
T ss_pred             eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeec---cCCceE
Confidence            34445 9999999999999877889999999999999999999999999999877665543  33344443   469999


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeEEEEEeC
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVAFG  181 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  181 (332)
                      ++|++++++++..+.+|.++|.++...  +.++++|+.|++|++||+++++|+..++.+...  ...+.....+++++.|
T Consensus       314 kVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D  391 (537)
T KOG0274|consen  314 KVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLD  391 (537)
T ss_pred             EEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeec
Confidence            999999999999999999999999987  789999999999999999999999888765432  2233333778888899


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp  261 (332)
                      ++|++||++...   .....+.+|.+-+.  .+...+..+++++.|++|++||...+++++.+...  +...+..+++. 
T Consensus       392 ~~IkvWdl~~~~---~c~~tl~~h~~~v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~-  463 (537)
T KOG0274|consen  392 TTIKVWDLRTKR---KCIHTLQGHTSLVS--SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG-  463 (537)
T ss_pred             cceEeecCCchh---hhhhhhcCCccccc--ccccccceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC-
Confidence            999999998752   11233445544443  33456789999999999999999999999887642  33555555554 


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEecCC
Q 020021          262 EGMFVISGSGDGSVYAWSVRSGKEVASWMSF  292 (332)
Q Consensus       262 dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~  292 (332)
                       ...+++++.||++++||+.+++.+..+..+
T Consensus       464 -~~~il~s~~~~~~~l~dl~~~~~~~~l~~~  493 (537)
T KOG0274|consen  464 -KEEILCSSDDGSVKLWDLRSGTLIRTLLST  493 (537)
T ss_pred             -cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence             578888999999999999999988776433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.8e-28  Score=229.35  Aligned_cols=278  Identities=19%  Similarity=0.305  Sum_probs=225.7

Q ss_pred             eEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEE-eeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           28 MSFRD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        28 ~~l~~-h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      +.+.+ |...+.+..|.  .+++++++.|.+|++||..++..+.+ +.+|...|..+++...+..+++++.   |.++|+
T Consensus       201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~---D~t~rv  275 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST---DKTERV  275 (537)
T ss_pred             eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEec---CCcEEe
Confidence            44454 56778888888  56999999999999999999998888 9999999999999987778888875   899999


Q ss_pred             EEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee-EEEcCCCeEEEEEeCCEE
Q 020021          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQGLVFAVAFGGYI  184 (332)
Q Consensus       106 ~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i  184 (332)
                      ||..+|++..++.||++.|.++...+  ..+++||+|.+|++|++.++.++.++..+..+. ...-....+++++.|++|
T Consensus       276 Wd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  276 WDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTV  353 (537)
T ss_pred             EecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceE
Confidence            99999999999999999999987754  678999999999999999999998887543332 233347788889999999


Q ss_pred             EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC-eEeEEeeecCCCCCcceEEEECCCC
Q 020021          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEG  263 (332)
Q Consensus       185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~v~~spdg  263 (332)
                      ++||.+..+    ....+.+|...|.++.+.+. ..+++|+.|++|++||+.+. ++++.+.   +|...+..  +...+
T Consensus       354 ~VW~~~~~~----cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~---~h~~~v~~--l~~~~  423 (537)
T KOG0274|consen  354 KVWDPRTGK----CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ---GHTSLVSS--LLLRD  423 (537)
T ss_pred             EEEEhhhce----eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc---CCcccccc--ccccc
Confidence            999998432    23466788888988877665 88999999999999999998 7777765   34444433  34578


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEecC-CCCCCceEEeCCCeeEEEeccce--EEEecccccc
Q 020021          264 MFVISGSGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSK  324 (332)
Q Consensus       264 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~  324 (332)
                      ++|.+++.|++|++||..+++++..+.. |...+..+++.  ...+++++.|  +++|+....+
T Consensus       424 ~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  424 NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence            9999999999999999999999999887 66778888876  3344555554  8888764433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.2e-27  Score=208.04  Aligned_cols=244  Identities=27%  Similarity=0.454  Sum_probs=203.7

Q ss_pred             ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      ....+.+|...+..+.|+|+++++++++.|+.+++||+.+++.+..+..|...+..+++.+++..++.+.   .|+.+++
T Consensus        43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~  119 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKV  119 (289)
T ss_pred             cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec---CCCeEEE
Confidence            5567889999999999999999999999999999999998888888888888899999999876666554   3789999


Q ss_pred             EEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCC-eEEEEEeCC
Q 020021          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVAFGG  182 (332)
Q Consensus       106 ~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~  182 (332)
                      ||+.+++....+..|...|.++.|+|++.++++++.|+.+++||++++++...+..+.  .....+.+++ .+++++.++
T Consensus       120 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  199 (289)
T cd00200         120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG  199 (289)
T ss_pred             EECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC
Confidence            9999888888999999999999999999999999889999999998877766665433  2345666766 566666689


Q ss_pred             EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      .+++||++....    ......+...+..++++|++.++++++.+|.|++||..+++....+.   .+...+..++|+|+
T Consensus       200 ~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~~  272 (289)
T cd00200         200 TIKLWDLSTGKC----LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---GHTNSVTSLAWSPD  272 (289)
T ss_pred             cEEEEECCCCce----ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---ccCCcEEEEEECCC
Confidence            999999975321    11222344578899999999999988889999999999888777665   45567889999999


Q ss_pred             CCEEEEEcCCCcEEEEE
Q 020021          263 GMFVISGSGDGSVYAWS  279 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd  279 (332)
                      +++|++++.||.|++|+
T Consensus       273 ~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         273 GKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCEEEEecCCCeEEecC
Confidence            99999999999999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-29  Score=204.67  Aligned_cols=240  Identities=19%  Similarity=0.317  Sum_probs=191.7

Q ss_pred             CCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcC-CCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021           33 YNGRISSMDFHKSS-SYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (332)
Q Consensus        33 h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~  110 (332)
                      -++.++.++|++.. +.+++++.||+++|||+. ....++.++.|...|.++.+.+-.+..+..+  +||++|++|+...
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts--SWD~TiKLW~~~r  136 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS--SWDGTIKLWDPNR  136 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee--ccCCceEeecCCC
Confidence            35678999999875 688999999999999975 3457888899999999999998887776665  6999999999999


Q ss_pred             CceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEc--CCCeEEEEEeCCEEE
Q 020021          111 NKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYD--DQGLVFAVAFGGYIR  185 (332)
Q Consensus       111 ~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~i~  185 (332)
                      ++.++++.||...|....|+| .++.|+++|.|+++++||++.......+..+...  ++.++  +...+++++.|+.||
T Consensus       137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr  216 (311)
T KOG0277|consen  137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR  216 (311)
T ss_pred             CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence            999999999999999999999 6889999999999999998764332234443322  22222  233455566799999


Q ss_pred             EEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeE-eEEeeecCCCCCcceEEEECC-C
Q 020021          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSP-E  262 (332)
Q Consensus       186 vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~v~~sp-d  262 (332)
                      .||+|+.+.+   ++.+.+|.-.|+.++|||.. .+|++++-|-+++|||...+.. +.++.   .|...+..+.||+ +
T Consensus       217 ~wDir~~r~p---l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~---~HtEFv~g~Dws~~~  290 (311)
T KOG0277|consen  217 GWDIRNLRTP---LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD---HHTEFVCGLDWSLFD  290 (311)
T ss_pred             EEehhhcccc---ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh---ccceEEecccccccc
Confidence            9999998754   34455777789999999976 6788999999999999875543 22232   5667777888887 6


Q ss_pred             CCEEEEEcCCCcEEEEEC
Q 020021          263 GMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~  280 (332)
                      ..++|+++.|+.++||+.
T Consensus       291 ~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  291 PGQVASTGWDELLYVWNP  308 (311)
T ss_pred             Cceeeecccccceeeecc
Confidence            789999999999999984

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=8.7e-28  Score=225.49  Aligned_cols=239  Identities=13%  Similarity=0.217  Sum_probs=177.8

Q ss_pred             cceeEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCe--------eeEEeeecccceeEEEEccCCCEEEEec
Q 020021           25 EVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT--------CLKTINSKKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~d-g~~l~tgs~D~tv~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      .....|.+|.++|.+++|+|+ +++|+||+.|++|+|||+.++.        ++..+.+|...|..++|+|++..+++++
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            456789999999999999997 7899999999999999997542        3446778888999999999988765432


Q ss_pred             CCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeE
Q 020021           96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  175 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (332)
                        +.|++|++||+.+++.+..+. |...|.+++|+|+|++|++++.|++|++||++++.....+..+...         .
T Consensus       145 --S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~---------~  212 (568)
T PTZ00420        145 --GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG---------K  212 (568)
T ss_pred             --eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCC---------c
Confidence              348999999999988777775 6688999999999999999999999999999988765444321100         0


Q ss_pred             EEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC----eEEEEEccC-CeEeEEeeecCCC
Q 020021          176 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG----HIHVLDSFR-GTLLSTYNVKPVS  250 (332)
Q Consensus       176 ~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~  250 (332)
                      .       .+                      .+....|++++.++++++.++    +|++||++. +..+...... .+
T Consensus       213 ~-------s~----------------------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld-~~  262 (568)
T PTZ00420        213 N-------TK----------------------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID-NA  262 (568)
T ss_pred             e-------eE----------------------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec-CC
Confidence            0       00                      011235778999888887764    799999985 4555544322 12


Q ss_pred             CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec--CCCCCCceEEeCCCee
Q 020021          251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSL  306 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~~~~~v~~l~~sp~~~  306 (332)
                      ...+.-....++|.++++|+.|++||+|++..+. +..+.  .+..+...++|.|...
T Consensus       263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence            2222223335669999999999999999997764 33332  2456778899999753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=7.7e-29  Score=209.89  Aligned_cols=252  Identities=19%  Similarity=0.290  Sum_probs=212.8

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      -+.++..+|.||-..|..+++|+...||++++.|+.|+-||++.++.++.|.+|-.+|.++..+|.-+.+++++   .|.
T Consensus       181 atg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g---rDs  257 (460)
T KOG0285|consen  181 ATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG---RDS  257 (460)
T ss_pred             ccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecC---Ccc
Confidence            34566778999999999999999999999999999999999999999999999999999999999888888775   489


Q ss_pred             eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeEEEEE
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVA  179 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  179 (332)
                      ++|+||+.+...+.++.||+.+|..+.+.|-...++|||.|++|++||++.++...++..+.+.  +.+.+|....|+++
T Consensus       258 t~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASa  337 (460)
T KOG0285|consen  258 TIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASA  337 (460)
T ss_pred             eEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhcc
Confidence            9999999999999999999999999999998889999999999999999999887766555443  45667888888888


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec--CC---CCCcc
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK--PV---SRNST  254 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~~~~  254 (332)
                      .-+.|+-|++...   .+.. .+.+|..-+++++...|| ++++|+++|.+..||..+|...+.....  ++   ....+
T Consensus       338 s~dnik~w~~p~g---~f~~-nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI  412 (460)
T KOG0285|consen  338 SPDNIKQWKLPEG---EFLQ-NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGI  412 (460)
T ss_pred             CCccceeccCCcc---chhh-ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccce
Confidence            8888999998643   2222 266777788999998887 4688999999999999998765544211  11   13356


Q ss_pred             eEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021          255 LEASFSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       255 ~~v~~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                      .+.+|...|..|+||..|++|++|.-.
T Consensus       413 ~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  413 FASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             eEEeecccCceEEeccCCcceEEEecc
Confidence            778999999999999999999999753

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.2e-29  Score=232.20  Aligned_cols=264  Identities=17%  Similarity=0.294  Sum_probs=212.6

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~  110 (332)
                      ..-+..|.+++|+|..++++++-..|.|.+||...+.++..+..|..+|..++|+|....++++.   -|-.|+||+.++
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGG---DDykIkVWnYk~   82 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGG---DDYKIKVWNYKT   82 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecC---CccEEEEEeccc
Confidence            33466799999999999999999999999999999999999999999999999999999888764   488999999999


Q ss_pred             CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcC-CCeEEEEEeCCEEEEE
Q 020021          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDD-QGLVFAVAFGGYIRMF  187 (332)
Q Consensus       111 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~i~vw  187 (332)
                      .+++.++.||.+.|+.+.|++...+++|+|.|.||+||++.+++|+..+..+.  +.++.|+| ...+++++.|.+||+|
T Consensus        83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW  162 (1202)
T ss_pred             ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence            99999999999999999999999999999999999999999999998887654  45778888 5577777889999999


Q ss_pred             ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEE---EEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC
Q 020021          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM---LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (332)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~  264 (332)
                      |+.-.+....         ++. ++.=-+.|...   +.+..|-.          ..+.++   +|...+..++|+|.-.
T Consensus       163 DisGLRkk~~---------~pg-~~e~~~~~~~~~~dLfg~~DaV----------VK~VLE---GHDRGVNwaAfhpTlp  219 (1202)
T KOG0292|consen  163 DISGLRKKNK---------APG-SLEDQMRGQQGNSDLFGQTDAV----------VKHVLE---GHDRGVNWAAFHPTLP  219 (1202)
T ss_pred             eecchhccCC---------CCC-CchhhhhccccchhhcCCcCee----------eeeeec---ccccccceEEecCCcc
Confidence            9865433211         110 00000001100   11111211          112233   5677888999999999


Q ss_pred             EEEEEcCCCcEEEEECCCCce--EEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          265 FVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       265 ~l~sgs~Dg~i~vWd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      .++||++|+-|++|.+...+.  +.++.+|...|+++-|+|...++.+.|.|  +++|+.
T Consensus       220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence            999999999999999965443  67789999999999999999999999999  666665

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.4e-29  Score=215.52  Aligned_cols=250  Identities=16%  Similarity=0.267  Sum_probs=198.9

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeec-ccceeEEEEccCCCEEEEecCCCCC
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      ..+++.++|.||..+|.-|.||||.++|++++.|..+++||+.+|++.+.+... ...+.+++|.|++..+++++.   |
T Consensus       257 ~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~---d  333 (519)
T KOG0293|consen  257 VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP---D  333 (519)
T ss_pred             cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC---C
Confidence            348999999999999999999999999999999999999999999999888654 677899999999999999875   8


Q ss_pred             ceeEEEEccCCceEEEeeccc-ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-ceeEEEcCCCeEEEE
Q 020021          101 ESLRLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAV  178 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~~~~h~-~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  178 (332)
                      .++..||+... .+...++-. ..|..++.++||+.+++...|..|++++.++..+...+.... ......+.++.++.+
T Consensus       334 r~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv  412 (519)
T KOG0293|consen  334 RTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV  412 (519)
T ss_pred             CcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE
Confidence            89999998654 344555543 468999999999999999999999999987766665554432 334556677777766


Q ss_pred             Ee-CCEEEEEECccCCCCCeeEEEecCCCCC--ceeEEEc-CCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021          179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISD--ANVVKFS-NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  254 (332)
Q Consensus       179 ~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~--v~~v~~s-~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  254 (332)
                      .. +.++++||+.....    +....||...  +..-+|. .+.+++++|+.|+.|+||+..+|+++.++.   +|..++
T Consensus       413 nL~~qei~LWDl~e~~l----v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls---GHs~~v  485 (519)
T KOG0293|consen  413 NLQDQEIHLWDLEENKL----VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS---GHSKTV  485 (519)
T ss_pred             EcccCeeEEeecchhhH----HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec---CCccee
Confidence            64 78999999873211    0111122211  1122343 355899999999999999999999998886   677899


Q ss_pred             eEEEECCCC-CEEEEEcCCCcEEEEECCC
Q 020021          255 LEASFSPEG-MFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       255 ~~v~~spdg-~~l~sgs~Dg~i~vWd~~~  282 (332)
                      .+|+|+|.. .++||||+||+||||-...
T Consensus       486 NcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  486 NCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             eEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999999965 7899999999999998754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2e-27  Score=236.82  Aligned_cols=244  Identities=14%  Similarity=0.197  Sum_probs=193.2

Q ss_pred             CCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEcc-CCCEEEEecCCCCCceeEEEEccC
Q 020021           33 YNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHD  110 (332)
Q Consensus        33 h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~v~v~d~~~  110 (332)
                      +...|.+++|+| ++++|++++.|++|+|||+.+++.+..+..|...|..++|++ ++..+++++.   |++|++||+.+
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~---Dg~v~iWd~~~  607 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD---DGSVKLWSINQ  607 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC---CCEEEEEECCC
Confidence            346799999986 478999999999999999999999999999999999999997 5667777754   88999999999


Q ss_pred             CceEEEeecccccEEEEEec-CCCCeEEEeeCCCcEEEEeCCCce-EEEEEEecC--ceeEEEcCCCeEEEEEeCCEEEE
Q 020021          111 NKYLRYFKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQG--RPAAAYDDQGLVFAVAFGGYIRM  186 (332)
Q Consensus       111 ~~~~~~~~~h~~~V~~v~~~-~~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~v  186 (332)
                      +..+..+..| ..|.++.|+ +++..|++|+.|++|++||++..+ +...+..+.  .....+.+...+++++.|+.|++
T Consensus       608 ~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~iki  686 (793)
T PLN00181        608 GVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKL  686 (793)
T ss_pred             CcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEE
Confidence            9888888755 679999995 478999999999999999998754 233333222  23445555667778888999999


Q ss_pred             EECccCCCC--CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec----------CCCCCcc
Q 020021          187 FDARKYEKG--PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----------PVSRNST  254 (332)
Q Consensus       187 wd~~~~~~~--~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~~~~  254 (332)
                      ||++.....  ...+....+|...+..++|+|++.++++++.|+.|++|+...+..+..+...          ..+...+
T Consensus       687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V  766 (793)
T PLN00181        687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI  766 (793)
T ss_pred             EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence            998753211  1123455677778889999999999999999999999998766544333211          1123467


Q ss_pred             eEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          255 LEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       255 ~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      .+++|+|++.+|++|+.||.|+||++
T Consensus       767 ~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        767 SSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEcCCCCeEEEecCCCcEEEEec
Confidence            89999999999999999999999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=7.7e-28  Score=204.30  Aligned_cols=246  Identities=14%  Similarity=0.232  Sum_probs=201.5

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      .++...+.||..+|+++.||.||.+||||+.+|.|+||+..++.....+...-..+.-++|+|.+..+++++.   |+.+
T Consensus        96 ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~---DGsv  172 (399)
T KOG0296|consen   96 GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST---DGSV  172 (399)
T ss_pred             CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecC---CCcE
Confidence            4567789999999999999999999999999999999999999888777655556778999999988888876   7899


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE------ecCc-------------
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR------VQGR-------------  164 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~------~~~~-------------  164 (332)
                      -.|.+.++...+.+.||..++++=.|.|+|++++++..||+|++||+.++++...+.      .+..             
T Consensus       173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~  252 (399)
T KOG0296|consen  173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN  252 (399)
T ss_pred             EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence            999999988899999999999999999999999999999999999999987765543      1000             


Q ss_pred             --------------eeEEEc--------------------C---CCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCC
Q 020021          165 --------------PAAAYD--------------------D---QGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDI  206 (332)
Q Consensus       165 --------------~~~~~~--------------------~---~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~  206 (332)
                                    ...+..                    +   .-.+++++ .||+|.+||+......   ...  .|.
T Consensus       253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R---~~c--~he  327 (399)
T KOG0296|consen  253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR---HIC--EHE  327 (399)
T ss_pred             CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh---eec--cCC
Confidence                          000000                    0   00223333 4899999998654321   111  244


Q ss_pred             CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021          207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                      ..|..+.|-+ -.++++++.+|.|+.||.++|+++.++.   +|...|.+.+++||.++++|+|.|++.+||++.
T Consensus       328 ~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~---GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  328 DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT---GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe---cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            5788999988 6789999999999999999999999887   567789999999999999999999999999875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.5e-28  Score=201.30  Aligned_cols=264  Identities=18%  Similarity=0.290  Sum_probs=208.3

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC--EEEEecCCCCC
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWD  100 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~s~~g~d  100 (332)
                      .+...-.|.+|.++|++++.+  +.++||||.|-+|+|||......+..+..|...++.+.|.+.-.  .+++++.   |
T Consensus        32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd---D  106 (362)
T KOG0294|consen   32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD---D  106 (362)
T ss_pred             eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC---C
Confidence            345566689999999999987  89999999999999999999999999999999999999988765  6777764   7


Q ss_pred             ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-eEEEcCCCeEEEEE
Q 020021          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVA  179 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  179 (332)
                      +.|.+|+...=..++++++|++.|+.++++|.++.-+|.+.|+.++.||+-.++......+...+ .+.+.+.|..|.++
T Consensus       107 G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~  186 (362)
T KOG0294|consen  107 GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS  186 (362)
T ss_pred             CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE
Confidence            89999999998999999999999999999999999999999999999999888776666655443 46778889888888


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~  259 (332)
                      .-+.|-+|.+..-..     +..-..+..+.++.|- ++.++++|..|+.|.+||..+..++..+.   .|.+.|-.+.+
T Consensus       187 ~~~~i~i~q~d~A~v-----~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~---AH~~RVK~i~~  257 (362)
T KOG0294|consen  187 GRNKIDIYQLDNASV-----FREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL---AHENRVKDIAS  257 (362)
T ss_pred             eccEEEEEecccHhH-----hhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeee---cchhheeeeEE
Confidence            888999998754211     0000011123344443 56788999999999999998877777766   45677766652


Q ss_pred             --CCCCCEEEEEcCCCcEEEEECCCC-----ceEEEecCCCCCCceEEe
Q 020021          260 --SPEGMFVISGSGDGSVYAWSVRSG-----KEVASWMSFDTEPPVIKW  301 (332)
Q Consensus       260 --spdg~~l~sgs~Dg~i~vWd~~~~-----~~~~~~~~~~~~v~~l~~  301 (332)
                        .|++.||+|+|.||.|+|||+...     +.+..... +.+++|+..
T Consensus       258 ~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  258 YTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             EecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence              578899999999999999999765     22333322 445666654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=200.93  Aligned_cols=237  Identities=21%  Similarity=0.332  Sum_probs=198.0

Q ss_pred             EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEE--EeecccccEEEEEecC-CCCeEEEeeCCCcEE
Q 020021           70 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR--YFKGHHDRVVSLSLCS-SKDCFISGSLDRTVL  146 (332)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~--~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~  146 (332)
                      +.+.+|...+.+++|..+|..++.++.   |.++++|+++.....+  ..++|.+.|-.++|+| +.+.|++++.|++|+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~---dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSF---DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeeccc---CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            345677788999999999999999876   8899999998875544  3578999999999987 677999999999999


Q ss_pred             EEeCCCceEEEEEEecC-ceeEEEcCCCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE
Q 020021          147 LWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT  224 (332)
Q Consensus       147 iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~  224 (332)
                      +||++.++|...+...+ .....+.|++.+++++ .|..|...|.|+.+....     ......++.++++.++.+++..
T Consensus        91 ~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~-----~~~~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE-----EQFKFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             EEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh-----hcccceeeeeeecCCCCEEEEe
Confidence            99999999988776554 4456778877666655 588999999987643211     1122356788999999999999


Q ss_pred             cCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCC
Q 020021          225 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  304 (332)
Q Consensus       225 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~  304 (332)
                      +..|+|.|.....-++++.+..   |...+.++.|+|+|+|+|+||+|..+.+||+...-++..+..+.-+|..|+||.|
T Consensus       166 ~GlG~v~ILsypsLkpv~si~A---H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d  242 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLKPVQSIKA---HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD  242 (313)
T ss_pred             cCCceEEEEecccccccccccc---CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence            9999999999888888877764   4567789999999999999999999999999988888999999999999999999


Q ss_pred             eeEEEeccceEEE
Q 020021          305 SLMFVTGSSELSF  317 (332)
Q Consensus       305 ~~~l~t~~~d~~~  317 (332)
                      |++|++||+|..+
T Consensus       243 g~~lASaSEDh~I  255 (313)
T KOG1407|consen  243 GRMLASASEDHFI  255 (313)
T ss_pred             cceeeccCccceE
Confidence            9999999998444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=2.3e-29  Score=216.50  Aligned_cols=256  Identities=22%  Similarity=0.331  Sum_probs=207.4

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY   93 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (332)
                      +++|+......+++.+|.|-.++|+++.|.+++.++++++.|+.+++|+++.....+++.+|...|+.+.|......++.
T Consensus       199 Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs  278 (459)
T KOG0288|consen  199 IKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS  278 (459)
T ss_pred             hhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee
Confidence            46788888788999999999999999999999999999999999999999999999999999999999988877766676


Q ss_pred             ecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-eEEEcCC
Q 020021           94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQ  172 (332)
Q Consensus        94 ~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~  172 (332)
                      ++   .|.++++||+....+.+++- ....+..+..+  ...++||-.|++||+||+++..+.....+.+.. ......+
T Consensus       279 gs---~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~  352 (459)
T KOG0288|consen  279 GS---ADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMD  352 (459)
T ss_pred             cc---ccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccC
Confidence            65   49999999999877766543 22334444444  467899999999999999999887777665543 3444455


Q ss_pred             C-eEEEEEeCCEEEEEECccCCCCCeeEEEecCC--CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021          173 G-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD--ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       173 ~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (332)
                      + .+++++-|+++.+.|+|..+.  ...+...+-  ..+.+.+.||||++|+++|+.||.|+||++.++++...+.... 
T Consensus       353 g~~lLsssRDdtl~viDlRt~eI--~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~-  429 (459)
T KOG0288|consen  353 GLELLSSSRDDTLKVIDLRTKEI--RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST-  429 (459)
T ss_pred             CeEEeeecCCCceeeeecccccE--EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC-
Confidence            5 466677799999999997643  223332221  1368899999999999999999999999999999877665432 


Q ss_pred             CCCcceEEEECCCCCEEEEEcCCCcEEEE
Q 020021          250 SRNSTLEASFSPEGMFVISGSGDGSVYAW  278 (332)
Q Consensus       250 ~~~~~~~v~~spdg~~l~sgs~Dg~i~vW  278 (332)
                      ....+++++|+|.|.+|++++.++.+++|
T Consensus       430 s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  430 SNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCcceEEEEEcCCCchhhcccCCcceEec
Confidence            22368899999999999999999999999

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=7.7e-28  Score=208.30  Aligned_cols=273  Identities=19%  Similarity=0.282  Sum_probs=232.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      -.|.++...|..+.++||+.|.++.++|-..+..+.++++|...|..+.++++...++.++.   |..|++|......+.
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa---d~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA---DEIIRVWSVPLSSEP  296 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC---cceEEeeccccccCc
Confidence            45778888888789999999999999999999999999999999999999999988887765   889999999888888


Q ss_pred             EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec----CceeEEEcCCCeEEEEEe-CCEEEEEEC
Q 020021          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF-GGYIRMFDA  189 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~i~vwd~  189 (332)
                      .....|..+|+.+..+|.|++|+++|.||++.+-|++++.+.......    ......++|++.+|..+. |+.+++||+
T Consensus       297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl  376 (506)
T KOG0289|consen  297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL  376 (506)
T ss_pred             cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence            888999999999999999999999999999999999999887665442    245778999999888774 899999999


Q ss_pred             ccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE
Q 020021          190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (332)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg  269 (332)
                      .....    .-...+|.++|..++|+.+|.+++++.+|+.|++||+++.+...++....  ...+..+.|.+.|.||+.+
T Consensus       377 ks~~~----~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~--~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  377 KSQTN----VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE--KKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             CCccc----cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc--cccceeEEEcCCCCeEEee
Confidence            76432    22345788999999999999999999999999999999887666665322  2357789999999999999


Q ss_pred             cCCCcEEEEECCC--CceEEEecCCCCCCceEEeCCCeeEEEeccceEE
Q 020021          270 SGDGSVYAWSVRS--GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS  316 (332)
Q Consensus       270 s~Dg~i~vWd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~  316 (332)
                      +.|=.|++++-.+  ..++..+..|.+..+.+.|....+++++++.|..
T Consensus       451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~  499 (506)
T KOG0289|consen  451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI  499 (506)
T ss_pred             cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh
Confidence            9886777766433  4457778888888999999999999999999844

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.3e-28  Score=194.96  Aligned_cols=240  Identities=19%  Similarity=0.322  Sum_probs=200.0

Q ss_pred             eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEE
Q 020021           69 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW  148 (332)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iW  148 (332)
                      ++.+..++.+|..+.|+-+|++.+++.+   |.++|+|+...+..++++.||-.+|..++.+.|+..|++++.|+.+.+|
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGs---drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGS---DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCC---CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence            4556677888999999999999988743   9999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceEEEEEEecC--ceeEEEcCCC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc
Q 020021          149 DQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT  225 (332)
Q Consensus       149 d~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~  225 (332)
                      |.++++....++.+.  .+.+.|.... .++++++|..+|+||.|.....|.+++..+-  ..|.++.++  +..|++|+
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~--D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK--DGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc--CceeEEEec--ccEEEeec
Confidence            999999988886653  4556666554 5566678999999999987766666554322  356666664  67899999


Q ss_pred             CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCC--ceEEeCC
Q 020021          226 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP--PVIKWTP  303 (332)
Q Consensus       226 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v--~~l~~sp  303 (332)
                      .||+++.||++.|++...+.     ..+++++.||+|++..+.++.|+++++-|-.+|+.+....+|...-  ...+++.
T Consensus       163 ~DGtvRtydiR~G~l~sDy~-----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q  237 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSSDYF-----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ  237 (307)
T ss_pred             cCCcEEEEEeecceeehhhc-----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc
Confidence            99999999999998765553     3567899999999999999999999999999999999998887543  3355777


Q ss_pred             CeeEEEeccce--EEEecc
Q 020021          304 GSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       304 ~~~~l~t~~~d--~~~w~~  320 (332)
                      ...++++|++|  +.+|+.
T Consensus       238 sdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  238 SDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             cceeEEeccCCceEEEEEe
Confidence            78899999999  666654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.9e-28  Score=204.19  Aligned_cols=248  Identities=21%  Similarity=0.348  Sum_probs=201.1

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC------------------CeeeEEeeecccceeEEEEccCC
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------------------ATCLKTINSKKYGVDLVCFTSHP   88 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~   88 (332)
                      .+.+..|.+++.+.+|+|||.++||||.|.+|+|.|++.                  -..++++..|...|..+.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            356889999999999999999999999999999999861                  13467788888899999999998


Q ss_pred             CEEEEecCCCCCceeEEEEccCCceEEEee--cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee
Q 020021           89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  166 (332)
Q Consensus        89 ~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~--~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~  166 (332)
                      ..+++++.   |++|+++|......-+.++  .-..+|.++.|+|.|.+|+.|..--+++++|+++-+|...-       
T Consensus       185 ~ILiS~sr---D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-------  254 (430)
T KOG0640|consen  185 TILISGSR---DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-------  254 (430)
T ss_pred             heEEeccC---CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-------
Confidence            88887765   8999999985433222221  24568999999999999999999999999999876653110       


Q ss_pred             EEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021          167 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                                                       +...+|...++.+.+|+.|++.++++.||.|++||-.+++++.++..
T Consensus       255 ---------------------------------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~  301 (430)
T KOG0640|consen  255 ---------------------------------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN  301 (430)
T ss_pred             ---------------------------------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh
Confidence                                             01123556789999999999999999999999999999988877753


Q ss_pred             cCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec------------------------------------
Q 020021          247 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM------------------------------------  290 (332)
Q Consensus       247 ~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~------------------------------------  290 (332)
                      . +....+.+..|+.+|+|+++.+.|..+++|.+.+++++....                                    
T Consensus       302 A-H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsW  380 (430)
T KOG0640|consen  302 A-HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSW  380 (430)
T ss_pred             h-cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeec
Confidence            2 334567788899999999999999999999999988765542                                    


Q ss_pred             -------------CCCCCCceEEeCCCeeEEEeccce--EEEe
Q 020021          291 -------------SFDTEPPVIKWTPGSLMFVTGSSE--LSFW  318 (332)
Q Consensus       291 -------------~~~~~v~~l~~sp~~~~l~t~~~d--~~~w  318 (332)
                                   +|++.+.++.-||.+-.|+|++.|  .++|
T Consensus       381 daRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  381 DARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW  423 (430)
T ss_pred             cccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence                         577777778889999999999998  5555

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.9e-28  Score=212.34  Aligned_cols=270  Identities=20%  Similarity=0.233  Sum_probs=213.0

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      ..+|++|+|+|..++=+.......+-||+..+...++++......+..++|..+|..++++.   ..+.|+++|+++...
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD---~sG~V~vfD~k~r~i  102 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD---ESGHVKVFDMKSRVI  102 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC---CcCcEEEeccccHHH
Confidence            35899999999876533333347799999998888888888888899999999998777664   367899999888777


Q ss_pred             EEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcC--CCeEEEEEeCCEEEEEE
Q 020021          114 LRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDD--QGLVFAVAFGGYIRMFD  188 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~i~vwd  188 (332)
                      ++.+.+|+.+|..+.|+|+ +..|++|+.|+.+++||+.+......+..+.  .-+..+.+  +..++++++||+||+||
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D  182 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD  182 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence            8889999999999999994 5688999999999999998876433333222  22333333  34688888999999999


Q ss_pred             CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (332)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s  268 (332)
                      +|.... +...+   .|..+|..+.+-|.|+.+++++.+ .|++||+.+|..+-...  ..|...++++.+..++.-|+|
T Consensus       183 tR~~~~-~v~el---nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~--~~H~KtVTcL~l~s~~~rLlS  255 (487)
T KOG0310|consen  183 TRSLTS-RVVEL---NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSM--FNHNKTVTCLRLASDSTRLLS  255 (487)
T ss_pred             eccCCc-eeEEe---cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhh--hcccceEEEEEeecCCceEee
Confidence            997542 22222   234578899999999999887654 89999999665432221  137789999999999999999


Q ss_pred             EcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021          269 GSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       269 gs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      ||.|+.+++||+.+-+.++.+ ..+++|.+++.+||++.++.|-++
T Consensus       256 ~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsn  300 (487)
T KOG0310|consen  256 GSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSN  300 (487)
T ss_pred             cccccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEeccc
Confidence            999999999999888877776 467899999999999999988776

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.6e-29  Score=211.71  Aligned_cols=242  Identities=20%  Similarity=0.365  Sum_probs=202.2

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCCEEEEecCCCCCceeEEEE
Q 020021           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d  107 (332)
                      .|.-|..+|.|++||.|..+||||+.||.|++|.+.+|.|++.+. +|..+|.++.|+.++..+++++   .|.++|+.-
T Consensus       258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s---fD~tvRiHG  334 (508)
T KOG0275|consen  258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS---FDQTVRIHG  334 (508)
T ss_pred             ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc---ccceEEEec
Confidence            355678999999999999999999999999999999999999987 7899999999999999998875   499999999


Q ss_pred             ccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc----eeEEEcC--CCeEEEEEeC
Q 020021          108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR----PAAAYDD--QGLVFAVAFG  181 (332)
Q Consensus       108 ~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~  181 (332)
                      +++|++++.++||...|+.+.|.++|.+++|+|.||+|++|+.++..|..+++..+.    +.+..-|  +..++.+-..
T Consensus       335 lKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs  414 (508)
T KOG0275|consen  335 LKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS  414 (508)
T ss_pred             cccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence            999999999999999999999999999999999999999999999999988875432    1222222  3345555567


Q ss_pred             CEEEEEECccCCCCCeeEEEecCC-CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s  260 (332)
                      +++.+.++.-.   ....++.+.. ..+..+++.||.|..+.+.+.|+.++.|...+|++.+++.   .|..-++.++-+
T Consensus       415 ntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~---VhEkdvIGl~HH  488 (508)
T KOG0275|consen  415 NTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP---VHEKDVIGLTHH  488 (508)
T ss_pred             CeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee---cccccccccccC
Confidence            88888876421   1111111111 1356778999999999999999999999999999988776   566778888999


Q ss_pred             CCCCEEEEEcCCCcEEEEE
Q 020021          261 PEGMFVISGSGDGSVYAWS  279 (332)
Q Consensus       261 pdg~~l~sgs~Dg~i~vWd  279 (332)
                      |-.+.||+-++||.+++|.
T Consensus       489 PHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  489 PHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccchhhhhcccchhhhcC
Confidence            9999999999999999994

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=1.4e-27  Score=203.53  Aligned_cols=250  Identities=22%  Similarity=0.286  Sum_probs=202.3

Q ss_pred             cccceeEeccCCCcEEEEEECCCC---CEEEEEeCCCcEEEEEcCCCee----eEEeeecccceeEEEEccCCCEEEEec
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSS---SYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg---~~l~tgs~D~tv~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      +.+..+++.||+++|.++++...+   ..++++|.|.++++|-.+.++.    ++.-.+|...|.++...+++..+++++
T Consensus       133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS  212 (423)
T KOG0313|consen  133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS  212 (423)
T ss_pred             CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence            467788999999999988874322   3599999999999998876653    233458999999999999999888775


Q ss_pred             CCCCCceeEEEEccC-------------------------CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeC
Q 020021           96 KNGWDESLRLLSLHD-------------------------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ  150 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~-------------------------~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~  150 (332)
                         ||.++++|+.++                         +.++-++.||+.+|.++.|++ ...+.|+|+|.+|+.||+
T Consensus       213 ---~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDl  288 (423)
T KOG0313|consen  213 ---WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDL  288 (423)
T ss_pred             ---ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEe
Confidence               699999999321                         124667899999999999998 778999999999999999


Q ss_pred             CCceEEEEEEecC-ceeEEEcCCC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCC
Q 020021          151 RAEKCQGLLRVQG-RPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTME  227 (332)
Q Consensus       151 ~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~d  227 (332)
                      .++.+...+..+. ..+..+.+.. .+++++.|..||+||-|.. .+....+++.+|.+-|.++.++|... .+++++.|
T Consensus       289 etg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~-~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D  367 (423)
T KOG0313|consen  289 ETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG-DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD  367 (423)
T ss_pred             ecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC-CCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence            9999887776543 3345555544 4555667899999999986 45666778889999999999999875 56788999


Q ss_pred             CeEEEEEccCCe-EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021          228 GHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       228 g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                      +++++||+++.. ++..+.   .|...+.++.|+ ++.+++|||.|.+|+|+.-.
T Consensus       368 ~t~klWDvRS~k~plydI~---~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  368 NTVKLWDVRSTKAPLYDIA---GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CeEEEEEeccCCCcceeec---cCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            999999999877 666665   467888899994 56799999999999998653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.4e-28  Score=211.22  Aligned_cols=250  Identities=18%  Similarity=0.299  Sum_probs=205.8

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ....++|....+.|.+++|-.||.+||.|...|-|+|+|..+...+..+.+|+.++..+.|+|....++..+++  |..+
T Consensus        58 ~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD--d~v~  135 (487)
T KOG0310|consen   58 RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD--DKVV  135 (487)
T ss_pred             hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC--CceE
Confidence            34456677788999999999999999999999999999977766788899999999999999999888776543  7889


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCce-EEEEEEe-cCceeEEEcCCCeEEEEEe
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEK-CQGLLRV-QGRPAAAYDDQGLVFAVAF  180 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~  180 (332)
                      ++||+.+...+..+.+|++.|.+.+++|.. ..++|||+||+||+||.+... ..-.+.. .......+-+++..++.+.
T Consensus       136 k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg  215 (487)
T KOG0310|consen  136 KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG  215 (487)
T ss_pred             EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC
Confidence            999999988777899999999999999954 489999999999999998763 3333322 1233556667888888889


Q ss_pred             CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s  260 (332)
                      ++.+++||+.....   .......|...|+++++..+++.|++++.|+++++||..+.+.++.+..    .+++.+++.+
T Consensus       216 Gn~vkVWDl~~G~q---ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~pvLsiavs  288 (487)
T KOG0310|consen  216 GNSVKVWDLTTGGQ---LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----PGPVLSIAVS  288 (487)
T ss_pred             CCeEEEEEecCCce---ehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----ccceeeEEec
Confidence            99999999875432   1222333667899999999999999999999999999888888887763    4789999999


Q ss_pred             CCCCEEEEEcCCCcEEEEECCC
Q 020021          261 PEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       261 pdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      ||++.++.|-.||.+-+=+...
T Consensus       289 ~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  289 PDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             CCCceEEEecccceeeeehhhc
Confidence            9999999999999887765433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.1e-26  Score=185.87  Aligned_cols=250  Identities=20%  Similarity=0.358  Sum_probs=197.8

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee-----EEeeecccceeEEEEccCCC---EEEEecCCCCCc
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-----KTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDE  101 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~---~~~~~s~~g~d~  101 (332)
                      -+.|.++|.|.+|||+|.+|+||+.|++|++--++...|.     -.+..|...|..++|..++.   .++.++..| |.
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag-dc  163 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG-DC  163 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC-cc
Confidence            4679999999999999999999999999999877644432     24667888899999976554   344443333 78


Q ss_pred             eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  181 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (332)
                      .|.+-|-.+|+.++.+.||++.|.++- +=++.+|+|||+|.+||+||++-+.|+.++.....      .          
T Consensus       164 ~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~------~----------  226 (350)
T KOG0641|consen  164 KIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH------D----------  226 (350)
T ss_pred             eEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCccc------C----------
Confidence            888889999999999999999999873 33578999999999999999988777654421100      0          


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp  261 (332)
                                   +       +-..+.|.+++..|.|+++++|-.|....+||++.+..++.+.   -|...+.++.|||
T Consensus       227 -------------~-------glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~---phsadir~vrfsp  283 (350)
T KOG0641|consen  227 -------------G-------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH---PHSADIRCVRFSP  283 (350)
T ss_pred             -------------C-------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC---CCccceeEEEeCC
Confidence                         0       0112467889999999999999999999999999999988875   3567888999999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCC----ceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          262 EGMFVISGSGDGSVYAWSVRSG----KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       262 dg~~l~sgs~Dg~i~vWd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      ...|++++|.|..|++=|++-.    -.+.....|...+-.+.|+|..-.|++.+.|  +++|..
T Consensus       284 ~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  284 GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            9999999999999999998632    1122335677778889999999888888777  778864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.7e-28  Score=208.13  Aligned_cols=288  Identities=16%  Similarity=0.268  Sum_probs=219.2

Q ss_pred             cceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           25 EVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      .++..|.||.+.|.+++=+|.. ..+|||+.||.|+|||+.+.+|+.++..|...|..+++..  ..+++++   .|.+|
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg---dDKtv  131 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG---DDKTV  131 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec---CCcce
Confidence            4556789999999999999977 7799999999999999999999999999999999999887  4555553   48999


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcCC-CeEEE-EE
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQ-GLVFA-VA  179 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~-~~  179 (332)
                      +.|-++. .+++++.+ ...+.+++-+..+..|+|+|.  .|-|||.+-..++..+...  ...+..+.+- ..+++ ++
T Consensus       132 K~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~  207 (433)
T KOG0268|consen  132 KQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA  207 (433)
T ss_pred             eeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence            9999866 35666654 345677777777889999987  5899998777666655433  2345555553 23444 44


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~  259 (332)
                      .|+.|.+||+|....  +....+.   ..-+.++|+|.+-.+++++.|-.++.+|++..+  ..+..+..|.+.+..|+|
T Consensus       208 sDrsIvLyD~R~~~P--l~KVi~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdf  280 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASP--LKKVILT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDF  280 (433)
T ss_pred             cCCceEEEecccCCc--cceeeee---ccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEecc
Confidence            799999999997543  3222221   235779999999999999999999999987533  233334467788999999


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEeccce--EEEecc-cccccccc
Q 020021          260 SPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAY  328 (332)
Q Consensus       260 spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~-~~~~~~~~  328 (332)
                      ||.|+.++|||.|++||||.+..+..-... +.--+.|.++.||-|.+++++||.|  +++|-. .-.+||.+
T Consensus       281 sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~  353 (433)
T KOG0268|consen  281 SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI  353 (433)
T ss_pred             CCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence            999999999999999999999765432111 1112468999999999999999998  888854 33355544

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.3e-27  Score=208.34  Aligned_cols=248  Identities=21%  Similarity=0.320  Sum_probs=194.7

Q ss_pred             cHHHHhc-ccceeEe-ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEe
Q 020021           17 SEEILQS-MEVGMSF-RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS   94 (332)
Q Consensus        17 ~~~~~~~-~~~~~~l-~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   94 (332)
                      ++|++++ ....+.= ++|.+.|.+++.|+||+|||||+.|.-|.|||..+.+.++++.+|...|..++|......++++
T Consensus       183 ~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~  262 (479)
T KOG0299|consen  183 RDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSA  262 (479)
T ss_pred             cchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeee
Confidence            4466663 2222222 4999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             cCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCe
Q 020021           95 SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL  174 (332)
Q Consensus        95 s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  174 (332)
                      +.   |.++++|+++...++.++-||++.|.+++...-.+.+-.|+.|+++++|++.....+ .+.              
T Consensus       263 s~---Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifr--------------  324 (479)
T KOG0299|consen  263 SA---DRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFR--------------  324 (479)
T ss_pred             ec---CCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-eee--------------
Confidence            64   899999999999999999999999999998877766666669999999998432211 111              


Q ss_pred             EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec-CCCC--
Q 020021          175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-PVSR--  251 (332)
Q Consensus       175 ~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~--  251 (332)
                                                   ++...+.+++|=.+ ..+++|+++|.|.+|++.+.+++.+.... +...  
T Consensus       325 -----------------------------g~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~  374 (479)
T KOG0299|consen  325 -----------------------------GGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL  374 (479)
T ss_pred             -----------------------------CCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCc
Confidence                                         11123455666433 45789999999999998887777665432 1111  


Q ss_pred             ------CcceEEEECCCCCEEEEEcCCCcEEEEECCCCc----eEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          252 ------NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK----EVASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       252 ------~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~----~~~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                            .++++++..|...++|+||.+|+|++|-+.++-    .+..+. ..+.|+.|+|+++|+.+++|-.
T Consensus       375 ~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  375 DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             cccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecc
Confidence                  277889999999999999999999999998872    233333 6778999999999986665543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.2e-26  Score=212.72  Aligned_cols=276  Identities=20%  Similarity=0.293  Sum_probs=228.2

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      .+|+++.-+|+..+||.|-.||.|+||+..+.+.+-++.+|..+|+.+.|...|..+++++.   |+.|-+||+-...-+
T Consensus        66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGsk---Dt~IIvwDlV~E~Gl  142 (888)
T KOG0306|consen   66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSK---DTDIIVWDLVGEEGL  142 (888)
T ss_pred             ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCC---CccEEEEEeccceee
Confidence            58999998999999999999999999999999999999999999999999999999998865   889999999877778


Q ss_pred             EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeEEEEEeCCEEEEEECccC
Q 020021          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVAFGGYIRMFDARKY  192 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~vwd~~~~  192 (332)
                      ..++||++.|+..-|..+.++++|.|.|+.|++||++++.|..+...+...  ..++.+ ...++++.|+.+++|++...
T Consensus       143 ~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~  221 (888)
T KOG0306|consen  143 FRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-KLLVTAGTDSELKVWELAFE  221 (888)
T ss_pred             EEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-ceEEEEecCCceEEEEeecc
Confidence            899999999999999988899999999999999999999997665433222  223333 45566666777777766000


Q ss_pred             -------------------------------------------------------------------------C------
Q 020021          193 -------------------------------------------------------------------------E------  193 (332)
Q Consensus       193 -------------------------------------------------------------------------~------  193 (332)
                                                                                               .      
T Consensus       222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~  301 (888)
T KOG0306|consen  222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED  301 (888)
T ss_pred             cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence                                                                                     0      


Q ss_pred             -------------------------------CCC----------------------------eeEEEecCCCCCceeEEE
Q 020021          194 -------------------------------KGP----------------------------FDIFSVGGDISDANVVKF  214 (332)
Q Consensus       194 -------------------------------~~~----------------------------~~~~~~~~~~~~v~~v~~  214 (332)
                                                     ...                            ...+...||.++|+++++
T Consensus       302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v  381 (888)
T KOG0306|consen  302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV  381 (888)
T ss_pred             chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence                                           000                            001334567788899999


Q ss_pred             cCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCC
Q 020021          215 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT  294 (332)
Q Consensus       215 s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~  294 (332)
                      |.|...++++ ..+.+++|+..+.+++.++.     .+.+.+..|-|.++++++|...|.+.++|+.....+.+..+|.+
T Consensus       382 S~d~~~~~Sg-a~~SikiWn~~t~kciRTi~-----~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg  455 (888)
T KOG0306|consen  382 SSDSILLASG-AGESIKIWNRDTLKCIRTIT-----CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG  455 (888)
T ss_pred             ecCceeeeec-CCCcEEEEEccCcceeEEec-----cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc
Confidence            9887665554 56689999999999988775     34666788999999999999999999999999999999999999


Q ss_pred             CCceEEeCCCeeEEEeccce--EEEecc
Q 020021          295 EPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       295 ~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      .++.++.+||++.++|||.|  +++|+-
T Consensus       456 aIWsi~~~pD~~g~vT~saDktVkfWdf  483 (888)
T KOG0306|consen  456 AIWSISLSPDNKGFVTGSADKTVKFWDF  483 (888)
T ss_pred             ceeeeeecCCCCceEEecCCcEEEEEeE
Confidence            99999999999999999998  888864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.9e-27  Score=192.08  Aligned_cols=274  Identities=20%  Similarity=0.279  Sum_probs=205.1

Q ss_pred             EEEEECCC--CCEE-EEEe-----CCCcEEEEEcCCCeeeEEeeec--ccceeEEEEccCCCEEEEecCCCCCceeEEEE
Q 020021           38 SSMDFHKS--SSYL-VTAS-----DDESIRLYDVTAATCLKTINSK--KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (332)
Q Consensus        38 ~~i~~s~d--g~~l-~tgs-----~D~tv~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d  107 (332)
                      .++.|||=  +++. ||+.     ..|++.|-|+....-+......  ......++|++....+++++. | |+++++||
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~-G-DGSLrl~d   89 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAAS-G-DGSLRLFD   89 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEe-c-CceEEEec
Confidence            46788873  3332 3332     3578999998755555554432  356788999998887766654 3 89999999


Q ss_pred             ccC-CceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEcC--CCeEEEEEeC
Q 020021          108 LHD-NKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDD--QGLVFAVAFG  181 (332)
Q Consensus       108 ~~~-~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~  181 (332)
                      +.- ..++..++.|+.+|.+++|++ .++.++++|+|++||+||...++.+.++..+..  -.+.++|  ++.+.+++.|
T Consensus        90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd  169 (311)
T KOG0277|consen   90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD  169 (311)
T ss_pred             cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence            643 558999999999999999998 566888999999999999988887777765432  2344554  4566667789


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEEccCCe-EeEEeeecCCCCCcceEEEE
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASF  259 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~  259 (332)
                      +++++||+|..  ++...  ...|...+.++.++. +..++++++.|+.|++||++.-+ ++.++.   .|.-.|.++.|
T Consensus       170 ~~l~lwdvr~~--gk~~~--i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~---gh~~AVRkvk~  242 (311)
T KOG0277|consen  170 GTLRLWDVRSP--GKFMS--IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN---GHGLAVRKVKF  242 (311)
T ss_pred             ceEEEEEecCC--CceeE--EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeec---CCceEEEEEec
Confidence            99999999864  33333  334556788888886 55788899999999999998644 334443   56778889999


Q ss_pred             CCC-CCEEEEEcCCCcEEEEECCCCc-eEEEecCCCCCCceEEeCC-CeeEEEeccce--EEEecc
Q 020021          260 SPE-GMFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTP-GSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       260 spd-g~~l~sgs~Dg~i~vWd~~~~~-~~~~~~~~~~~v~~l~~sp-~~~~l~t~~~d--~~~w~~  320 (332)
                      ||- ...|||+|.|-++||||...+. .+.+...|+..+-.+.||+ +..++++.+=|  +.+|+|
T Consensus       243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            995 5789999999999999997543 4566677888888889988 45688888766  777876

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=4.3e-26  Score=214.09  Aligned_cols=225  Identities=14%  Similarity=0.229  Sum_probs=169.8

Q ss_pred             EEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccC-CCEEEEecCCCCCceeEEEEccCCc--------eEEEeeccc
Q 020021           51 TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNK--------YLRYFKGHH  121 (332)
Q Consensus        51 tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~s~~g~d~~v~v~d~~~~~--------~~~~~~~h~  121 (332)
                      +|+.++.+++|+......+..+.+|...|..++|+|+ +..+++++   .|++|++||+.++.        ++..+.+|.
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS---~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~  125 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGS---EDLTIRVWEIPHNDESVKEIKDPQCILKGHK  125 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEe---CCCeEEEEECCCCCccccccccceEEeecCC
Confidence            3778899999999888888889999999999999997 56666665   48999999997542        345688999


Q ss_pred             ccEEEEEecCCCCe-EEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEE
Q 020021          122 DRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF  200 (332)
Q Consensus       122 ~~V~~v~~~~~~~~-l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~  200 (332)
                      ..|.+++|+|++.. |+|++.|++|++||+++++....+.                                        
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----------------------------------------  165 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----------------------------------------  165 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----------------------------------------
Confidence            99999999998875 5799999999999998765321110                                        


Q ss_pred             EecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC--CcceEEEECCCCCEEEEEcCCC----c
Q 020021          201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR--NSTLEASFSPEGMFVISGSGDG----S  274 (332)
Q Consensus       201 ~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~v~~spdg~~l~sgs~Dg----~  274 (332)
                          +...+.+++|+|+|+++++++.|+.|++||+++++.+.++..+....  ..++...|++++.+|+|++.|+    .
T Consensus       166 ----~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~  241 (568)
T PTZ00420        166 ----MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE  241 (568)
T ss_pred             ----cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE
Confidence                11246789999999999999999999999999999887776432211  1122345679999999988775    7


Q ss_pred             EEEEECCC-CceEEEecCCCCCCceE---EeCCCeeEEEeccce--EEEeccccc
Q 020021          275 VYAWSVRS-GKEVASWMSFDTEPPVI---KWTPGSLMFVTGSSE--LSFWIPDLS  323 (332)
Q Consensus       275 i~vWd~~~-~~~~~~~~~~~~~v~~l---~~sp~~~~l~t~~~d--~~~w~~~~~  323 (332)
                      |+|||+.+ .+.+..+..+. ....|   -..+++.++++|++|  +++|++...
T Consensus       242 VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        242 MKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence            99999985 45555443222 23332   234568889998777  888887544

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=6.2e-26  Score=211.73  Aligned_cols=241  Identities=14%  Similarity=0.198  Sum_probs=182.4

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee-------------EEeeecccceeEEEEcc-CCCEEEEecCCCCC
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-------------KTINSKKYGVDLVCFTS-HPTTVIYSSKNGWD  100 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d  100 (332)
                      ..|....+++|+..+++++.+.....|+...+..+             ..+.+|...|..++|+| ++..+++++.   |
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~---D   97 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE---D   97 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC---C
Confidence            44566667788788889999999999987654332             13567888899999999 6667777653   8


Q ss_pred             ceeEEEEccCC-------ceEEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCC
Q 020021          101 ESLRLLSLHDN-------KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ  172 (332)
Q Consensus       101 ~~v~v~d~~~~-------~~~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~  172 (332)
                      ++|++||+..+       ..+..+.+|...|.+++|+|++ +.|+|++.|++|++||+++++....+             
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-------------  164 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI-------------  164 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-------------
Confidence            99999999764       3567899999999999999975 69999999999999999876543221             


Q ss_pred             CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC
Q 020021          173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  252 (332)
Q Consensus       173 ~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  252 (332)
                                                    .+|...+.+++|+|+|.++++++.|+.|++||+++++.+..+..+.  ..
T Consensus       165 ------------------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~--~~  212 (493)
T PTZ00421        165 ------------------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA--SA  212 (493)
T ss_pred             ------------------------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC--CC
Confidence                                          1233467889999999999999999999999999998877665321  22


Q ss_pred             cceEEEECCCCCEEEEEc----CCCcEEEEECCCCce-EEEecCC-CCCCceEEeCCCeeEEEeccc-e--EEEeccccc
Q 020021          253 STLEASFSPEGMFVISGS----GDGSVYAWSVRSGKE-VASWMSF-DTEPPVIKWTPGSLMFVTGSS-E--LSFWIPDLS  323 (332)
Q Consensus       253 ~~~~v~~spdg~~l~sgs----~Dg~i~vWd~~~~~~-~~~~~~~-~~~v~~l~~sp~~~~l~t~~~-d--~~~w~~~~~  323 (332)
                      ....+.|.|++..+++++    .|+.|++||+.+... +.....+ ...+....|+|++++|++++. |  +++|+....
T Consensus       213 ~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        213 KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            334678999988888764    479999999987543 3333222 234455678999998887763 5  788876543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=2.4e-26  Score=218.69  Aligned_cols=292  Identities=16%  Similarity=0.252  Sum_probs=221.1

Q ss_pred             eccC-CCcEEEEEECCCCCEEEEEe--CCCcEEEEEcCC------------CeeeEEeeecccceeEEEEccCCCEEEEe
Q 020021           30 FRDY-NGRISSMDFHKSSSYLVTAS--DDESIRLYDVTA------------ATCLKTINSKKYGVDLVCFTSHPTTVIYS   94 (332)
Q Consensus        30 l~~h-~~~I~~i~~s~dg~~l~tgs--~D~tv~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   94 (332)
                      +.+| +..|++|+.+|||..++||+  .|+.++||+.+.            .+.+.+...|...|.++.|+++|.++++|
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG   87 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG   87 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence            4444 46699999999999999999  999999998753            23455677888899999999999999998


Q ss_pred             cCCCCCceeEEEEccC-------C-----------ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEE
Q 020021           95 SKNGWDESLRLLSLHD-------N-----------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  156 (332)
Q Consensus        95 s~~g~d~~v~v~d~~~-------~-----------~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~  156 (332)
                      +.   |..|.+|....       +           ++...+.+|...|..+.|+|++.+|||+|.|++|.+||.++-++.
T Consensus        88 SD---D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~  164 (942)
T KOG0973|consen   88 SD---DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL  164 (942)
T ss_pred             cC---cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence            75   77899998762       1           146789999999999999999999999999999999999988777


Q ss_pred             EEEEecC--ceeEEEcCCCeEEEEE-eCCEEEEEECccCCCCCe--eEEEecCCCCCceeEEEcCCCCEEEEEc-CC---
Q 020021          157 GLLRVQG--RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPF--DIFSVGGDISDANVVKFSNDGRLMLLTT-ME---  227 (332)
Q Consensus       157 ~~~~~~~--~~~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~--~~~~~~~~~~~v~~v~~s~dg~~l~~~~-~d---  227 (332)
                      ..++.+.  .-...++|-|+++++- .|++|++|.+......+.  ..+...+-..-...+.+||||.+|++.- .+   
T Consensus       165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~  244 (942)
T KOG0973|consen  165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK  244 (942)
T ss_pred             eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence            7776543  3467889999888766 478999999654322110  0111111123456788999999998752 23   


Q ss_pred             CeEEEEEccCCeEeEEeeecCCCCCcceEEEECC-----CCC------------EEEEEcCCCcEEEEECCCCceEEEe-
Q 020021          228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-----EGM------------FVISGSGDGSVYAWSVRSGKEVASW-  289 (332)
Q Consensus       228 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp-----dg~------------~l~sgs~Dg~i~vWd~~~~~~~~~~-  289 (332)
                      .++.|++..+.+.-..+-   +|..++..+.|+|     ...            .+|+||.|++|.||.....+++... 
T Consensus       245 ~~~~IieR~tWk~~~~Lv---GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~  321 (942)
T KOG0973|consen  245 STIAIIERGTWKVDKDLV---GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH  321 (942)
T ss_pred             ceeEEEecCCceeeeeee---cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh
Confidence            368888876655544554   5667888899998     111            6889999999999998766664432 


Q ss_pred             cCCCCCCceEEeCCCeeEEEeccce--EEEeccccccccc
Q 020021          290 MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLGA  327 (332)
Q Consensus       290 ~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~~~~  327 (332)
                      .-++..|.+++|+|||..|..+|.|  +.+...+...||+
T Consensus       322 ~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~  361 (942)
T KOG0973|consen  322 NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGV  361 (942)
T ss_pred             hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence            2345789999999999888777777  6666666666665

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7.6e-26  Score=185.41  Aligned_cols=245  Identities=15%  Similarity=0.257  Sum_probs=188.7

Q ss_pred             ccceeEe-ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC--CCeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           24 MEVGMSF-RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        24 ~~~~~~l-~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      ..+.-.| .+|+..|.+++|+|.|++|++||.|.++-||.-.  ..+|+.++++|...|.+++|+++|.+++.++.   |
T Consensus        50 ~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR---D  126 (312)
T KOG0645|consen   50 WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR---D  126 (312)
T ss_pred             EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC---C
Confidence            4444445 3799999999999999999999999999999876  35789999999999999999999999999875   8


Q ss_pred             ceeEEEEccCC---ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC-Cce--EEEEEEecC--ceeEEEcCC
Q 020021          101 ESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEK--CQGLLRVQG--RPAAAYDDQ  172 (332)
Q Consensus       101 ~~v~v~d~~~~---~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~-~~~--~~~~~~~~~--~~~~~~~~~  172 (332)
                      ..|=+|.+..+   .+...|++|+..|..+.|+|....|+|+|+|.+||+|+-. .+.  |..++..+.  .-...|++.
T Consensus       127 KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~  206 (312)
T KOG0645|consen  127 KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI  206 (312)
T ss_pred             CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC
Confidence            89999988643   3577899999999999999999999999999999999865 332  333443332  335577786


Q ss_pred             C-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe----eec
Q 020021          173 G-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY----NVK  247 (332)
Q Consensus       173 ~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~  247 (332)
                      + ++.+++.|+++++|-....-.        ..+...+..+.+.  .-.|++++.|+.|++|.....-....+    ...
T Consensus       207 G~rl~s~sdD~tv~Iw~~~~~~~--------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~  276 (312)
T KOG0645|consen  207 GSRLVSCSDDGTVSIWRLYTDLS--------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKE  276 (312)
T ss_pred             CceEEEecCCcceEeeeeccCcc--------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhh
Confidence            6 566677789999997542110        0122345556666  456899999999999986542111111    122


Q ss_pred             CCCCCcceEEEECCC-CCEEEEEcCCCcEEEEECC
Q 020021          248 PVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       248 ~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd~~  281 (332)
                      ..|...++.+.|.|. ...|++||.||.|++|.+.
T Consensus       277 ~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  277 GAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             cccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            346678889999995 7899999999999999874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.9e-26  Score=207.78  Aligned_cols=238  Identities=16%  Similarity=0.254  Sum_probs=198.7

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee-cccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      .-++..|+++.|+++|.+|+.|-.+|+|.|||....+.+.++.. |...|.+++|.  ...+.+++   .|+.|..+|+.
T Consensus       214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGs---r~~~I~~~dvR  288 (484)
T KOG0305|consen  214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGS---RDGKILNHDVR  288 (484)
T ss_pred             ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEec---CCCcEEEEEEe
Confidence            33488999999999999999999999999999999999999988 88889999998  33445454   37899999998


Q ss_pred             CCceEEE-eecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE
Q 020021          110 DNKYLRY-FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD  188 (332)
Q Consensus       110 ~~~~~~~-~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd  188 (332)
                      ..+.... +++|...|-++.|++|+++||||+.|..+.|||.....+..                               
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~-------------------------------  337 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF-------------------------------  337 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE-------------------------------
Confidence            7665444 89999999999999999999999999999999984433221                               


Q ss_pred             CccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEE--cCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLT--TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (332)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~  265 (332)
                                  .+..|.+.|.+++|+|-. .+||+|  +.|++|++||..+|+.+....    ...-|..+.|++..+.
T Consensus       338 ------------~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd----tgsQVcsL~Wsk~~kE  401 (484)
T KOG0305|consen  338 ------------TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD----TGSQVCSLIWSKKYKE  401 (484)
T ss_pred             ------------EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc----cCCceeeEEEcCCCCE
Confidence                        112355678888999844 566665  579999999999999887664    2356778999999988


Q ss_pred             EEEE--cCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          266 VISG--SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       266 l~sg--s~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      |+++  -.+..|.||++.+-+.+..+.+|...|..++++|||..+++|+.|  +++|..
T Consensus       402 i~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  402 LLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             EEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence            8876  446689999999999999999999999999999999999999887  888875

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.3e-26  Score=191.44  Aligned_cols=286  Identities=17%  Similarity=0.232  Sum_probs=219.0

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      +.+++.|.||.+.|..++.....+++.|++.|.+.+||.++++.|+.+|.+|...|.++.|++.+..++.++.   |++.
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG---D~ta  214 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG---DETA  214 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC---Ccch
Confidence            4567778999999999999877789999999999999999999999999999999999999999887777763   5555


Q ss_pred             EEEE------ccC----------------------------------CceEEEeecccccEEEEEecCCCCeEEEeeCCC
Q 020021          104 RLLS------LHD----------------------------------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR  143 (332)
Q Consensus       104 ~v~d------~~~----------------------------------~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg  143 (332)
                      -+|.      +..                                  ..++..|.||.+.|.+++|-..|+.++|+|||+
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR  294 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence            5553      110                                  113567899999999999999999999999999


Q ss_pred             cEEEEeCCCceEEEEEEecCc--eeEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE
Q 020021          144 TVLLWDQRAEKCQGLLRVQGR--PAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL  220 (332)
Q Consensus       144 ~i~iWd~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  220 (332)
                      +..+||.+++..+..+..+..  .-+.-++ ...+++.+.|-+.|+||+|.. ...  .....||...|+++.|.-|.+ 
T Consensus       295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-I~s--V~VFQGHtdtVTS~vF~~dd~-  370 (481)
T KOG0300|consen  295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-IQS--VAVFQGHTDTVTSVVFNTDDR-  370 (481)
T ss_pred             cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-cce--eeeecccccceeEEEEecCCc-
Confidence            999999999988776654322  1123334 345666677899999999832 222  223458888999999997765 


Q ss_pred             EEEEcCCCeEEEEEccCCe-EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-----cCCCC
Q 020021          221 MLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-----MSFDT  294 (332)
Q Consensus       221 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-----~~~~~  294 (332)
                      +++++.|.+|++||++... .+.+++.    ..++..++.+..+..+|.--+...|++||+. |..+..+     .+|..
T Consensus       371 vVSgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrR  445 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRR  445 (481)
T ss_pred             eeecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccce
Confidence            7899999999999997643 4555542    3466788998888899998888999999994 5554433     46777


Q ss_pred             CCceEEeCC---CeeEEEeccce--EEEecccc
Q 020021          295 EPPVIKWTP---GSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       295 ~v~~l~~sp---~~~~l~t~~~d--~~~w~~~~  322 (332)
                      -|.|.+|..   -.++ .+++-|  +.-|...+
T Consensus       446 MV~c~AW~eehp~cnL-ftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  446 MVTCCAWLEEHPACNL-FTCGFDRMVAGWKINT  477 (481)
T ss_pred             eeeeeeccccCccccc-ccccccceeeeeEecc
Confidence            789999954   4444 455556  44455443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=6.4e-26  Score=206.40  Aligned_cols=279  Identities=17%  Similarity=0.237  Sum_probs=213.7

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee--EEeeecccceeE-EEEccCCC-EEEEecCCC
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDL-VCFTSHPT-TVIYSSKNG   98 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~--~~~~~~~~~v~~-~~~~~~~~-~~~~~s~~g   98 (332)
                      ..++...+.||..-|..+.+.+ +..++++|.|+++++|+-..++-+  +.+.++...+.. +|+.+..+ .++.+   +
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g---~   78 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVG---G   78 (745)
T ss_pred             cceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEee---c
Confidence            4566678999999999988765 458999999999999998655544  345555555544 77776333 35554   4


Q ss_pred             CCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEcCCCeEE
Q 020021           99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVF  176 (332)
Q Consensus        99 ~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~  176 (332)
                      .|.++.+|...+..++.+|+||+..|.+++...++. ++|||||.|+++|-.  +++....+.+..  ..+..-+...++
T Consensus        79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~v  155 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYV  155 (745)
T ss_pred             ccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEE
Confidence            699999999999999999999999999999877776 999999999999964  333333333322  233444666889


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  256 (332)
                      +++.|.+|++|.-...      .....+|...|+.+++-+++. +++++.||.|+.|++ +|+.+.++.   +|.+.+.+
T Consensus       156 TgsaDKtIklWk~~~~------l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYs  224 (745)
T KOG0301|consen  156 TGSADKTIKLWKGGTL------LKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYS  224 (745)
T ss_pred             eccCcceeeeccCCch------hhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee---ccceEEEE
Confidence            9999999999975321      223457888899999998765 689999999999998 677777665   57788889


Q ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce-EEEeccc
Q 020021          257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSFWIPD  321 (332)
Q Consensus       257 v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d-~~~w~~~  321 (332)
                      ++..++++.++|+++|++++||+..  ++...+..-...++++.+-++|..++.+|.. +++|..+
T Consensus       225 is~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  225 ISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            9988999999999999999999875  5666555444578999988888776655544 8888655

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.1e-27  Score=218.83  Aligned_cols=237  Identities=19%  Similarity=0.374  Sum_probs=208.8

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      .+..|+..|.++.+-..++.+++|+.|..+-+|......++-.+.+|..+|.++.|++....++.++.   +++|++||+
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsa---sgtiK~wDl   99 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSA---SGTIKVWDL   99 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccccc---CCceeeeeh
Confidence            46789999999998777899999999999999999888888889999999999999988877776654   789999999


Q ss_pred             cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE
Q 020021          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD  188 (332)
Q Consensus       109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd  188 (332)
                      +.++.+++|.||...+..++|+|-+.++++|+.|..+++||.+...|...+.                            
T Consensus       100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~----------------------------  151 (825)
T KOG0267|consen  100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK----------------------------  151 (825)
T ss_pred             hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec----------------------------
Confidence            9999999999999999999999999999999999999999998655543321                            


Q ss_pred             CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (332)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s  268 (332)
                                     +|...+..+.|+|+|++++.++.|..++|||...|+.+.+|.   .|...+..+.|+|..-.+++
T Consensus       152 ---------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~Lla~  213 (825)
T KOG0267|consen  152 ---------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVLLAP  213 (825)
T ss_pred             ---------------CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc---cccccccccccCchhhhhcc
Confidence                           233346778999999999999999999999999999998887   45567778889999999999


Q ss_pred             EcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021          269 GSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       269 gs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      ||.|+++++||+++-+.+.........|.+++|+|+++.+.+|..+
T Consensus       214 Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  214 GSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            9999999999999888888777778889999999999999998765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=4.7e-23  Score=182.31  Aligned_cols=269  Identities=13%  Similarity=0.173  Sum_probs=193.2

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~  125 (332)
                      +++++|++.|+++++||+.+++++..+..+. .+..++|++++..++.+.  +.++.+++||..+++.+..+..+.. +.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~~~~~~~-~~   76 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCA--SDSDTIQVIDLATGEVIGTLPSGPD-PE   76 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEE--CCCCeEEEEECCCCcEEEeccCCCC-cc
Confidence            3578999999999999999999888887554 356789999998775543  2378999999999888777765544 46


Q ss_pred             EEEecCCCCeEE-EeeCCCcEEEEeCCCceEEEEEEecC-ceeEEEcCCCeEEEEEeC--CEEEEEECccCCCCCeeEEE
Q 020021          126 SLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAFG--GYIRMFDARKYEKGPFDIFS  201 (332)
Q Consensus       126 ~v~~~~~~~~l~-s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~i~vwd~~~~~~~~~~~~~  201 (332)
                      .++|+|+++.++ +++.|+.+++||+++.+....+.... .....+++++.+++.+..  ..+.+||.+....  .....
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~--~~~~~  154 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI--VDNVL  154 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE--EEEEE
Confidence            789999998664 55678999999998877666554322 234567777766665543  4577788764321  11111


Q ss_pred             ecCCCCCceeEEEcCCCCEEEEE-cCCCeEEEEEccCCeEeEEeeecC--CC--CCcceEEEECCCCCEEEEE-cCCCcE
Q 020021          202 VGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKP--VS--RNSTLEASFSPEGMFVISG-SGDGSV  275 (332)
Q Consensus       202 ~~~~~~~v~~v~~s~dg~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~--~~--~~~~~~v~~spdg~~l~sg-s~Dg~i  275 (332)
                      .   ......++|+|+|+.++++ ..++.|++||+.+++.+..+....  .+  ......++|+||+++++.+ +.++.+
T Consensus       155 ~---~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i  231 (300)
T TIGR03866       155 V---DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV  231 (300)
T ss_pred             c---CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence            1   1234678999999988654 468999999999988776554221  11  1123468899999986544 556789


Q ss_pred             EEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc---ceEEEecccccc
Q 020021          276 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS---SELSFWIPDLSK  324 (332)
Q Consensus       276 ~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~---~d~~~w~~~~~~  324 (332)
                      .+||+.+++.+..+. +...+.+++|+|++++|+++.   .++.+|+....+
T Consensus       232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       232 AVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             EEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            999999887765543 445789999999999887653   359999886654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=3e-24  Score=175.76  Aligned_cols=235  Identities=15%  Similarity=0.217  Sum_probs=194.6

Q ss_pred             eeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC
Q 020021           72 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR  151 (332)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~  151 (332)
                      +.+|..+++-+.++.+|..+++++.   |.+..||--.+|+.+.++.||++.|++++..-+.+.++||+.|.++++||.+
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaK---D~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAK---DSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecC---CCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            4578888999999999999999876   8899999988999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEecCc-eeEEEcCCCeEEEEEeC------CEEEEEECccCCC---CCeeEEEecCCCCCceeEEEcCCCCEE
Q 020021          152 AEKCQGLLRVQGR-PAAAYDDQGLVFAVAFG------GYIRMFDARKYEK---GPFDIFSVGGDISDANVVKFSNDGRLM  221 (332)
Q Consensus       152 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~i~vwd~~~~~~---~~~~~~~~~~~~~~v~~v~~s~dg~~l  221 (332)
                      +++++..+..+.. -.+.++.++.++..+.|      +.|.++|++....   ..-....+..+.+.++.+.++|-+++|
T Consensus        83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            9999888776542 34567777777776654      5799999985421   111122333344678889999999999


Q ss_pred             EEEcCCCeEEEEEccCCeEe-EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEE
Q 020021          222 LLTTMEGHIHVLDSFRGTLL-STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK  300 (332)
Q Consensus       222 ~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~  300 (332)
                      ++|..||.|.+||+++|..+ ....   .|...++.+.||||..|++|+|.|.+.++||+.+.+.++++... .++++.+
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~---~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aa  238 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDE---EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAA  238 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechh---hhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-cccccee
Confidence            99999999999999998554 3323   45668889999999999999999999999999999988888654 5899999


Q ss_pred             eCCCeeEEEeccc
Q 020021          301 WTPGSLMFVTGSS  313 (332)
Q Consensus       301 ~sp~~~~l~t~~~  313 (332)
                      ++|-...++-|++
T Consensus       239 isP~~d~VilgGG  251 (327)
T KOG0643|consen  239 ISPLLDHVILGGG  251 (327)
T ss_pred             cccccceEEecCC
Confidence            9998777777654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.8e-25  Score=184.47  Aligned_cols=254  Identities=17%  Similarity=0.283  Sum_probs=200.8

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEc------CC------------------------------
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV------TA------------------------------   65 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~------~~------------------------------   65 (332)
                      .+.+...++.||.|.|++|.|++++.+++|++.|++..||..      ..                              
T Consensus       178 Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD  257 (481)
T KOG0300|consen  178 ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD  257 (481)
T ss_pred             ccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence            345667788999999999999999999999999999999962      11                              


Q ss_pred             Ce----eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC
Q 020021           66 AT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL  141 (332)
Q Consensus        66 ~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~  141 (332)
                      +.    .+..+.+|...|..+.|-..+++++.++   ||.+..+||+++++.+..+.||..+.+.++-+|..+.++|+|.
T Consensus       258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS---WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr  334 (481)
T KOG0300|consen  258 GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS---WDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR  334 (481)
T ss_pred             CceeeeeeeeeeccccceEehhhhcCcceeeeee---ccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc
Confidence            00    1234566777777777888888888874   7999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCce-EEEEEEecC--ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC
Q 020021          142 DRTVLLWDQRAEK-CQGLLRVQG--RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG  218 (332)
Q Consensus       142 Dg~i~iWd~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg  218 (332)
                      |-+.++||++..- ....|+.+.  ....+|..+..+++++.|.+|++||++++..+ +..+..   .++++.+++|..+
T Consensus       335 DtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsp-lATIRt---dS~~NRvavs~g~  410 (481)
T KOG0300|consen  335 DTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSP-LATIRT---DSPANRVAVSKGH  410 (481)
T ss_pred             CceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCc-ceeeec---CCccceeEeecCC
Confidence            9999999998432 234555443  34567777888998889999999999987653 333322   2578889999999


Q ss_pred             CEEEEEcCCCeEEEEEccCCeEeEEee--ecCCCCCcceEEEECCC--CCEEEEEcCCCcEEEEECCCC
Q 020021          219 RLMLLTTMEGHIHVLDSFRGTLLSTYN--VKPVSRNSTLEASFSPE--GMFVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       219 ~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~v~~spd--g~~l~sgs~Dg~i~vWd~~~~  283 (332)
                      .+|+.--.+..|++||+. |..+..+.  ..-+|...+.+++|..+  -.-|++++-|..+.-|.+...
T Consensus       411 ~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  411 PIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            999999999999999986 44333332  12356778888999743  366789999999999998653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=1.5e-22  Score=179.02  Aligned_cols=269  Identities=15%  Similarity=0.209  Sum_probs=193.8

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      +.+..+.+.+|.. +.++.|+|+++.+ ++++.|++|++||+.+++.+..+..+. .+..+++++++..+++++  +.++
T Consensus        20 t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~--~~~~   95 (300)
T TIGR03866        20 TLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIAN--EDDN   95 (300)
T ss_pred             CCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEc--CCCC
Confidence            4456677776654 5689999999876 677889999999999998877765543 345678999998776654  2378


Q ss_pred             eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC-cEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEE-E
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFA-V  178 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg-~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~  178 (332)
                      .+++||+.+++.+..+..+ ..+.+++|+|+++.+++++.++ .+.+||.++.+.......... ....+++++..+. .
T Consensus        96 ~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  174 (300)
T TIGR03866        96 LVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVS  174 (300)
T ss_pred             eEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEE
Confidence            9999999988777766532 3468899999999999988875 467789887766544332222 2356677765443 3


Q ss_pred             E-eCCEEEEEECccCCCCCeeEEEec--C-C--CCCceeEEEcCCCCEEEE-EcCCCeEEEEEccCCeEeEEeeecCCCC
Q 020021          179 A-FGGYIRMFDARKYEKGPFDIFSVG--G-D--ISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTLLSTYNVKPVSR  251 (332)
Q Consensus       179 ~-~~~~i~vwd~~~~~~~~~~~~~~~--~-~--~~~v~~v~~s~dg~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~  251 (332)
                      + .++.|++||++..+.  ...+...  + +  ......++|+|+|+++++ ...++.+.+||..+++.+....    +.
T Consensus       175 ~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~  248 (300)
T TIGR03866       175 SEIGGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL----VG  248 (300)
T ss_pred             cCCCCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----eC
Confidence            3 479999999976432  1111111  0 1  112346889999998554 4567789999999888765443    12


Q ss_pred             CcceEEEECCCCCEEEEE-cCCCcEEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021          252 NSTLEASFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP  303 (332)
Q Consensus       252 ~~~~~v~~spdg~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp  303 (332)
                      ..+..++|+|+|++|+++ +.++.|++||+.+++.+..+.. ...++.++|+|
T Consensus       249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~  300 (300)
T TIGR03866       249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVRP  300 (300)
T ss_pred             CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeCC
Confidence            356789999999999887 5689999999999998888865 45678888876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=3e-24  Score=204.51  Aligned_cols=250  Identities=18%  Similarity=0.266  Sum_probs=197.7

Q ss_pred             ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC------------------CeeeEEeeecccceeEEEEccC
Q 020021           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------------------ATCLKTINSKKYGVDLVCFTSH   87 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~   87 (332)
                      ..-+...|.+.|+|+.|+|||.+||+||+|+-|.||+...                  -++...+.+|...|..++|+|+
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~  140 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD  140 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence            3455788999999999999999999999999999999772                  1256678899999999999999


Q ss_pred             CCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc---
Q 020021           88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---  164 (332)
Q Consensus        88 ~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~---  164 (332)
                      +..+++++   .|++|.+||..+.+.++++++|+..|.++.|.|-|++|+|-+.|++|++|+...=.+...+..+..   
T Consensus       141 ~~~lvS~s---~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~  217 (942)
T KOG0973|consen  141 DSLLVSVS---LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP  217 (942)
T ss_pred             ccEEEEec---ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence            98888775   499999999999999999999999999999999999999999999999999655334444322211   


Q ss_pred             -----eeEEEcCCCeEEEEEe--C---CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC--------C-----C--
Q 020021          165 -----PAAAYDDQGLVFAVAF--G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND--------G-----R--  219 (332)
Q Consensus       165 -----~~~~~~~~~~~~~~~~--~---~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--------g-----~--  219 (332)
                           .-..++|+|.++++..  .   ..+.+.+-...+.    ...+-||..++.+++|+|-        |     .  
T Consensus       218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~----~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV----DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             CcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee----eeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence                 1235578898887663  2   3566665432221    2345578889999999872        1     1  


Q ss_pred             --EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 020021          220 --LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       220 --~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~  284 (332)
                        .+|+|+.|+.|-||.....+++-.  .+......+..++|||||..|+.+|.||+|.+..++..+
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~v--i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLFV--IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchhh--hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence              678899999999999766555432  223456788899999999999999999999999997643

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=7.1e-24  Score=183.84  Aligned_cols=247  Identities=17%  Similarity=0.265  Sum_probs=198.5

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      ...++|+||+..|..+.|+|+...+++++.|..|+||.+....+......|..+|+.+..++.+.++++++.   |++.-
T Consensus       252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~---d~~w~  328 (506)
T KOG0289|consen  252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN---DGTWA  328 (506)
T ss_pred             hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecC---CceEE
Confidence            344789999999999999999999999999999999999888887788889999999999999999999876   77899


Q ss_pred             EEEccCCceEEEeecc--cccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEEEEEe
Q 020021          105 LLSLHDNKYLRYFKGH--HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF  180 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h--~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  180 (332)
                      ..|+.++.++.....-  .-.+++.+|+|||..|.+|..|+.++|||++++.....|..+.  .....|..+|.+++.+.
T Consensus       329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a  408 (506)
T KOG0289|consen  329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA  408 (506)
T ss_pred             EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe
Confidence            9999998876554432  2348899999999999999999999999998887655554332  23567888898887775


Q ss_pred             -CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC--CeEeEEeeecCCCCCcceEE
Q 020021          181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR--GTLLSTYNVKPVSRNSTLEA  257 (332)
Q Consensus       181 -~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~v  257 (332)
                       |+.|++||+|+.+  -+..+.+... ..+.++.|.+.|++++.++.+=+|++++-.+  ...+..+.   .|.+....+
T Consensus       409 dd~~V~lwDLRKl~--n~kt~~l~~~-~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~---~~sg~st~v  482 (506)
T KOG0289|consen  409 DDGSVKLWDLRKLK--NFKTIQLDEK-KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA---DHSGLSTGV  482 (506)
T ss_pred             cCCeEEEEEehhhc--ccceeecccc-ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh---hccccccee
Confidence             5679999999765  2444444322 2689999999999999998888888887433  23333332   344566789


Q ss_pred             EECCCCCEEEEEcCCCcEEEEEC
Q 020021          258 SFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       258 ~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      .|....++++++|.|..++++.+
T Consensus       483 ~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  483 RFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eecccceEEeeccchhheEEeec
Confidence            99999999999999999988764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=8.1e-25  Score=182.57  Aligned_cols=250  Identities=14%  Similarity=0.267  Sum_probs=192.8

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee--ecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      ..+.++|=.|..+|+++.|+|...+|++|+.|++|+++|...-...+.++  ....+|.++.|+|.|.+++.+..   ..
T Consensus       162 hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd---Hp  238 (430)
T KOG0640|consen  162 HPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD---HP  238 (430)
T ss_pred             CceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC---CC
Confidence            46789999999999999999999999999999999999997544333332  23346889999999999998864   68


Q ss_pred             eeEEEEccCCceEEEe---ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe-cC---ceeEEEcCCCe
Q 020021          102 SLRLLSLHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QG---RPAAAYDDQGL  174 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~---~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-~~---~~~~~~~~~~~  174 (332)
                      ++++||+++-++....   .+|++.|+++.+++.++.-+|||.||.|++||--+++|+.++.- ++   ...+.|..++.
T Consensus       239 ~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k  318 (430)
T KOG0640|consen  239 TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK  318 (430)
T ss_pred             ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe
Confidence            9999999997765443   47999999999999999999999999999999989999877742 22   33456666665


Q ss_pred             -EEEEEeCCEEEEEECccCCCCCeeEEEecC---CCCCceeEEEcCCCCEEEEEc-CCCeEEEEEccCCeEeEEeeecCC
Q 020021          175 -VFAVAFGGYIRMFDARKYEKGPFDIFSVGG---DISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       175 -~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~---~~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~  249 (332)
                       +++.+.|..+++|.+.+.+  .+..+.-+|   .+.--+...|+....+++.-. ..+.+.-||.+++..+..+.  .+
T Consensus       319 yiLsSG~DS~vkLWEi~t~R--~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s--lg  394 (430)
T KOG0640|consen  319 YILSSGKDSTVKLWEISTGR--MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS--LG  394 (430)
T ss_pred             EEeecCCcceeeeeeecCCc--eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc--cC
Confidence             4556678999999987643  222333222   111223345777666666543 34678889999887665444  36


Q ss_pred             CCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       250 ~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      |++.+..+.-||.+.-+++||.|-.+|.|--
T Consensus       395 Hn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  395 HNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             CCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            7788888999999999999999999999964

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.6e-24  Score=201.66  Aligned_cols=216  Identities=21%  Similarity=0.328  Sum_probs=169.5

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC-EEEEecCCCCCce
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDES  102 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~  102 (332)
                      -++...|+||.+.|..|+||.+ ++|+|+|.|+|||+|++...+|++.|. |..-|++++|+|-.+ ++++|+   .|+.
T Consensus       359 ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGS---LD~K  433 (712)
T KOG0283|consen  359 EKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGS---LDGK  433 (712)
T ss_pred             ccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecc---cccc
Confidence            3455679999999999999985 599999999999999999999999884 666799999999555 566665   4899


Q ss_pred             eEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCC
Q 020021          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG  182 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (332)
                      +|+|++...+......-| +-|++++|+|||+..+.|+.+|.+++++....+.....+.....                 
T Consensus       434 vRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~-----------------  495 (712)
T KOG0283|consen  434 VRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN-----------------  495 (712)
T ss_pred             eEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc-----------------
Confidence            999999887776665544 88999999999999999999999999998877654433221100                 


Q ss_pred             EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC
Q 020021          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (332)
Q Consensus       183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp  261 (332)
                               .+       ...+  ..|+.+.|.|.. ..+++.++|.+|+|+|.+.-.++..|.... ..+.-....|++
T Consensus       496 ---------~K-------k~~~--~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-n~~SQ~~Asfs~  556 (712)
T KOG0283|consen  496 ---------KK-------KKQG--KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-NTSSQISASFSS  556 (712)
T ss_pred             ---------Cc-------cccC--ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-cCCcceeeeEcc
Confidence                     00       0001  146677776543 368889999999999998777777776432 223345678999


Q ss_pred             CCCEEEEEcCCCcEEEEECC
Q 020021          262 EGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       262 dg~~l~sgs~Dg~i~vWd~~  281 (332)
                      ||++|++|++|..|+||++.
T Consensus       557 Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  557 DGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             CCCEEEEeecCceEEEEeCC
Confidence            99999999999999999973

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.6e-24  Score=175.28  Aligned_cols=254  Identities=13%  Similarity=0.164  Sum_probs=188.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC---eeeEEeeecccceeEEEEcc--CCCEEEEecCCCCCceeEE
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~~~~~s~~g~d~~v~v  105 (332)
                      .+|++-|..+..+--|.+|||++.|++|||+.+..+   ..+.++.+|..+|..++|..  .|..+++++   +|+.|.+
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs---YDgkVIi   84 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS---YDGKVII   84 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee---cCceEEE
Confidence            568888888888888999999999999999999754   45788999999999999876  555565554   5999999


Q ss_pred             EEccCCce--EEEeecccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021          106 LSLHDNKY--LRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  181 (332)
Q Consensus       106 ~d~~~~~~--~~~~~~h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (332)
                      |.-+++.-  ......|...|++++|.|.  |-.|+.+|.||+|.+.+++....-...+.                    
T Consensus        85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki--------------------  144 (299)
T KOG1332|consen   85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI--------------------  144 (299)
T ss_pred             EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh--------------------
Confidence            99988753  3456789999999999986  45889999999999988765410000000                    


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC---C-----------CEEEEEcCCCeEEEEEccCCeEeEEeeec
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---G-----------RLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d---g-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (332)
                                          ...|...+++++..|.   |           +.|++++.|..|+||+...++-+.+-. .
T Consensus       145 --------------------~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~-l  203 (299)
T KOG1332|consen  145 --------------------VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT-L  203 (299)
T ss_pred             --------------------hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh-h
Confidence                                0012223444444443   2           568999999999999988764322111 1


Q ss_pred             CCCCCcceEEEECCCC----CEEEEEcCCCcEEEEECCCCc---eEEEecCCCCCCceEEeCCCeeEEEeccce--EEEe
Q 020021          248 PVSRNSTLEASFSPEG----MFVISGSGDGSVYAWSVRSGK---EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW  318 (332)
Q Consensus       248 ~~~~~~~~~v~~spdg----~~l~sgs~Dg~i~vWd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w  318 (332)
                      ..|...+..+||.|..    .+|||+|.||++.||......   ....+..++..+..++||+.|+.|+.+++|  +++|
T Consensus       204 ~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  204 EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence            2577899999999965    689999999999999875321   123345577889999999999998877666  9999


Q ss_pred             cccccccccc
Q 020021          319 IPDLSKLGAY  328 (332)
Q Consensus       319 ~~~~~~~~~~  328 (332)
                      -.+.++.=+.
T Consensus       284 ke~~~Gkw~~  293 (299)
T KOG1332|consen  284 KENVDGKWEE  293 (299)
T ss_pred             EeCCCCcEEE
Confidence            8777644333

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=8.9e-24  Score=192.57  Aligned_cols=249  Identities=17%  Similarity=0.269  Sum_probs=197.9

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEE-EEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISS-MDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV   91 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~-i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   91 (332)
                      .++|+.-.+..--...|.+|.+-|.. ++|.+ |+..|++|+.|+++.+|.+.+.+.+.++.+|...|.+++....+. +
T Consensus        37 ~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~  115 (745)
T KOG0301|consen   37 VKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-L  115 (745)
T ss_pred             eeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-e
Confidence            66777766555555668889999988 88875 556799999999999999999999999999998887776666665 5


Q ss_pred             EEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEE
Q 020021           92 IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAY  169 (332)
Q Consensus        92 ~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~  169 (332)
                      +++   +||.++++|-..  ++...+++|+..|+++.+-|.+ .++|||.|++||+|.-  ++++.++..+.  +-..+.
T Consensus       116 iSg---SWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v  187 (745)
T KOG0301|consen  116 ISG---SWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV  187 (745)
T ss_pred             Eec---ccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEE
Confidence            554   589999999864  4455699999999999998877 8999999999999964  66676776543  223455


Q ss_pred             cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021          170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       170 ~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (332)
                      -++..+++++.||.|+.|++...     .+....+|.+-+.++...+++..+++++.|++++||+..  ++.+.+.   .
T Consensus       188 l~~~~flScsNDg~Ir~w~~~ge-----~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~---l  257 (745)
T KOG0301|consen  188 LDDSHFLSCSNDGSIRLWDLDGE-----VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT---L  257 (745)
T ss_pred             ecCCCeEeecCCceEEEEeccCc-----eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe---c
Confidence            56778899999999999998421     234556788888999988999999999999999999965  6666665   3


Q ss_pred             CCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       250 ~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      +...++++.+-++|.. ++|++||.||||....
T Consensus       258 PttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  258 PTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CccceEEEEEeeCCCE-EEeccCceEEEEEecc
Confidence            4457888888788776 5688899999998764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=1.1e-23  Score=183.78  Aligned_cols=243  Identities=16%  Similarity=0.289  Sum_probs=186.7

Q ss_pred             ccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCe--------ee--EEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021           31 RDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAAT--------CL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~--------~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   99 (332)
                      .-|.++|+-+.+.|+. .++||++..+.+.|||...-.        +.  -.+.+|...-..++|++.....+.++  +.
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~--~~  198 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG--SD  198 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec--cC
Confidence            4599999999999987 567888999999999986422        11  25677876566788988777555543  34


Q ss_pred             CceeEEEEccCCc-------eEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCc--eEEEEEEecCceeEEE
Q 020021          100 DESLRLLSLHDNK-------YLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQGRPAAAY  169 (332)
Q Consensus       100 d~~v~v~d~~~~~-------~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~~~~~~~~~~  169 (332)
                      |+++.+||++...       ....+.+|.+.|..++|++ +...|++++.|+.+.|||.|++  ++..            
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~------------  266 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH------------  266 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc------------
Confidence            8899999997533       3567899999999999998 5679999999999999999853  1100            


Q ss_pred             cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEEccCCe-EeEEeeec
Q 020021          170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGT-LLSTYNVK  247 (332)
Q Consensus       170 ~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~  247 (332)
                                                     ....|..++++++|+|- +.+||+++.|++|.+||++... .++++.  
T Consensus       267 -------------------------------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e--  313 (422)
T KOG0264|consen  267 -------------------------------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE--  313 (422)
T ss_pred             -------------------------------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc--
Confidence                                           11235578899999985 5677889999999999998754 344444  


Q ss_pred             CCCCCcceEEEECCCC-CEEEEEcCCCcEEEEECCCC-ce-------------EEEecCCCCCCceEEeCCCee-EEEec
Q 020021          248 PVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSG-KE-------------VASWMSFDTEPPVIKWTPGSL-MFVTG  311 (332)
Q Consensus       248 ~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~-~~-------------~~~~~~~~~~v~~l~~sp~~~-~l~t~  311 (332)
                       .|...+..|.|||.. ..|||.+.|+.+.|||+..- +.             +..-.+|...|..++|+|+.- .++++
T Consensus       314 -~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv  392 (422)
T KOG0264|consen  314 -GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV  392 (422)
T ss_pred             -CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEe
Confidence             678899999999964 68889999999999999641 11             122357888999999999875 56667


Q ss_pred             cce--EEEeccc
Q 020021          312 SSE--LSFWIPD  321 (332)
Q Consensus       312 ~~d--~~~w~~~  321 (332)
                      +.|  +++|.+.
T Consensus       393 aeDN~LqIW~~s  404 (422)
T KOG0264|consen  393 AEDNILQIWQMA  404 (422)
T ss_pred             cCCceEEEeecc
Confidence            777  9999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.8e-24  Score=183.75  Aligned_cols=248  Identities=17%  Similarity=0.275  Sum_probs=191.4

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      -+..++|++|.|.|.+|+++.  ..++|+|.|++|+.|..+. ..++++.+.. .+..+.-+.....++++     -..|
T Consensus        99 R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~s-~~~gIdh~~~~~~FaTc-----Ge~i  169 (433)
T KOG0268|consen   99 RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGKS-VYLGIDHHRKNSVFATC-----GEQI  169 (433)
T ss_pred             hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeeccc-ccccccccccccccccc-----Ccee
Confidence            445788999999999999986  7889999999999998764 4556654432 23333333333333333     2479


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEEe-
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAF-  180 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-  180 (332)
                      -+||.+...++..+.--.+.|.++.|+|- ...|++++.|+.|.++|+++..++..+.+..+ +..++.|....|.++. 
T Consensus       170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~E  249 (433)
T KOG0268|consen  170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANE  249 (433)
T ss_pred             eecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccc
Confidence            99999999999999999999999999995 45788888999999999999988776655443 3456777666666664 


Q ss_pred             CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s  260 (332)
                      |..+..+|+|....+ +.  ...+|.+.|..+.|||.|+.+++|+-|.+|+||....++....+..+-  -..+.+|.||
T Consensus       250 D~nlY~~DmR~l~~p-~~--v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR--Mq~V~~Vk~S  324 (433)
T KOG0268|consen  250 DHNLYTYDMRNLSRP-LN--VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR--MQHVFCVKYS  324 (433)
T ss_pred             cccceehhhhhhccc-ch--hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh--hheeeEEEEe
Confidence            788999999986542 22  233577789999999999999999999999999998887665554322  1357789999


Q ss_pred             CCCCEEEEEcCCCcEEEEECCCCce
Q 020021          261 PEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       261 pdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                      .|.+|++|||+|+.||+|.-...+.
T Consensus       325 ~Dskyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  325 MDSKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             ccccEEEecCCCcceeeeecchhhh
Confidence            9999999999999999997655443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.2e-23  Score=183.62  Aligned_cols=244  Identities=18%  Similarity=0.219  Sum_probs=192.1

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee-EEe-----------------eecccceeEEEEccCCC
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-KTI-----------------NSKKYGVDLVCFTSHPT   89 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~-~~~-----------------~~~~~~v~~~~~~~~~~   89 (332)
                      ..++.|+-+|.++.++|++.+.++++.|++|.=|++.++... ..+                 ..|...+..++.+++++
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            557889999999999999999999999999999999987743 111                 13445577899999999


Q ss_pred             EEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEE
Q 020021           90 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY  169 (332)
Q Consensus        90 ~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~  169 (332)
                      +++++   |.|+.|.+|+..+.+.++.+.+|.+.|.+++|-.....++++|.|+++++|++.....+.+           
T Consensus       216 ylatg---g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet-----------  281 (479)
T KOG0299|consen  216 YLATG---GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET-----------  281 (479)
T ss_pred             EEEec---CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH-----------
Confidence            99986   4589999999999999999999999999999998888999999999999999864432211           


Q ss_pred             cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021          170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       170 ~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (332)
                                                      +-+|+..|..+....-++.+-+|+.|+++++|++..-..+ .|.   .
T Consensus       282 --------------------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifr---g  325 (479)
T KOG0299|consen  282 --------------------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFR---G  325 (479)
T ss_pred             --------------------------------HhCCccceeeechhcccceEEeccccceeEEEecccccee-eee---C
Confidence                                            1145555666666667788888889999999998543222 333   2


Q ss_pred             CCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec-CC-----------CCCCceEEeCCCeeEEEeccce--E
Q 020021          250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM-SF-----------DTEPPVIKWTPGSLMFVTGSSE--L  315 (332)
Q Consensus       250 ~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~-~~-----------~~~v~~l~~sp~~~~l~t~~~d--~  315 (332)
                      +...+-+++| -+..+++|||+||+|.+|++.+.+++.+.. +|           +..|+.|+..|...++++|+.+  +
T Consensus       326 ~~~sidcv~~-In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~v  404 (479)
T KOG0299|consen  326 GEGSIDCVAF-INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCV  404 (479)
T ss_pred             CCCCeeeEEE-ecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCce
Confidence            3445556676 566788999999999999999988876542 22           2267889999999999999876  9


Q ss_pred             EEecccc
Q 020021          316 SFWIPDL  322 (332)
Q Consensus       316 ~~w~~~~  322 (332)
                      ++|-...
T Consensus       405 rLW~i~~  411 (479)
T KOG0299|consen  405 RLWKIED  411 (479)
T ss_pred             EEEEecC
Confidence            9997643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-23  Score=183.87  Aligned_cols=224  Identities=19%  Similarity=0.288  Sum_probs=176.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc----
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH----  109 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~----  109 (332)
                      .++|.++.-+|+|.+|+.|.--+.+.+|.+.+|+.+..+.+|=..|+++.|+.++..+++++.   |+.|.+|++.    
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk---Dg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK---DGAVLVWLLTDLVS  157 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC---CccEEEEEEEeecc
Confidence            478999999999999998889999999999999999999888888999999999999998876   8899999863    


Q ss_pred             -----CCceEEEeecccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCC
Q 020021          110 -----DNKYLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG  182 (332)
Q Consensus       110 -----~~~~~~~~~~h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (332)
                           +-++++.+.+|+-+|+.+...+.  ..+|+|+|.|.++|+||+..+..+..+..+.                   
T Consensus       158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~-------------------  218 (476)
T KOG0646|consen  158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS-------------------  218 (476)
T ss_pred             cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC-------------------
Confidence                 23578899999999999988764  4599999999999999998887655443322                   


Q ss_pred             EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEe-------------EEeeecCC
Q 020021          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL-------------STYNVKPV  249 (332)
Q Consensus       183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~  249 (332)
                                               .+.+++.+|.++.+.+|+.+|.|.+.++......             ..+....+
T Consensus       219 -------------------------si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G  273 (476)
T KOG0646|consen  219 -------------------------SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG  273 (476)
T ss_pred             -------------------------cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence                                     2445555565666666666666655554322100             00111123


Q ss_pred             CCC--cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCC
Q 020021          250 SRN--STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  304 (332)
Q Consensus       250 ~~~--~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~  304 (332)
                      |.+  .+++++++-||..|++|++||.++|||+...++++++....++|+-+.+.|=
T Consensus       274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            444  8889999999999999999999999999999999888766778888888654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.1e-22  Score=159.81  Aligned_cols=265  Identities=18%  Similarity=0.314  Sum_probs=188.2

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      +.++.+..|... ..|.+++|+|.|.+.+.|+..+++||--.....  ..-.+|..++.       +            .
T Consensus        21 ~~f~~i~~l~ds-qairav~fhp~g~lyavgsnskt~ric~yp~l~--~~r~~hea~~~-------p------------p   78 (350)
T KOG0641|consen   21 KHFEAINILEDS-QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALI--DLRHAHEAAKQ-------P------------P   78 (350)
T ss_pred             cceEEEEEecch-hheeeEEecCCCceEEeccCCceEEEEcccccc--CcccccccccC-------C------------C
Confidence            456777777643 469999999999999999999999986432111  00012221110       0            0


Q ss_pred             eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE-----EEEecCce--eEEE-c---
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQGRP--AAAY-D---  170 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~-----~~~~~~~~--~~~~-~---  170 (332)
                      .|+         .+.-+.|.+.|.+.+|+|+|..++|||+|++|++--++...|..     .+.++.-.  ..++ +   
T Consensus        79 ~v~---------~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~  149 (350)
T KOG0641|consen   79 SVL---------CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE  149 (350)
T ss_pred             eEE---------eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC
Confidence            111         12345799999999999999999999999999998876655432     22332211  1222 2   


Q ss_pred             CCCeEEEEEeCC--EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee--
Q 020021          171 DQGLVFAVAFGG--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV--  246 (332)
Q Consensus       171 ~~~~~~~~~~~~--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  246 (332)
                      ..+.+++.+..|  .|.+-|....  ..+.  .+.+|...+.+ -++-.|-++++|+.|.+|+.||++-...+.++..  
T Consensus       150 s~~~il~s~gagdc~iy~tdc~~g--~~~~--a~sghtghila-lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~  224 (350)
T KOG0641|consen  150 SGGAILASAGAGDCKIYITDCGRG--QGFH--ALSGHTGHILA-LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF  224 (350)
T ss_pred             cCceEEEecCCCcceEEEeecCCC--Ccce--eecCCcccEEE-EEEecCcEEEccCCCceEEEEeeeccceeeeccCcc
Confidence            234566655544  4555555432  2333  34567666554 3788899999999999999999988777665432  


Q ss_pred             --cCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceEEEecccc
Q 020021          247 --KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  322 (332)
Q Consensus       247 --~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~  322 (332)
                        .......+.+++..|.|+.|++|-+|.++.++|+.-++.+..+..|++.|.++.|||...++.|++.|-++..-++
T Consensus       225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence              2223456788999999999999999999999999999999999999999999999999999999999966554444

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=1.6e-23  Score=189.35  Aligned_cols=283  Identities=18%  Similarity=0.301  Sum_probs=196.8

Q ss_pred             cCCCcEE--EEEECCC---CCEEEEEeCCCcEEEEEcCCCee------eEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           32 DYNGRIS--SMDFHKS---SSYLVTASDDESIRLYDVTAATC------LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        32 ~h~~~I~--~i~~s~d---g~~l~tgs~D~tv~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      .|.-++.  +.+|++-   ..+|+-+..||.|+++|.....-      +.....|...|..+.+.|....++.++  | |
T Consensus        45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas--G-D  121 (720)
T KOG0321|consen   45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS--G-D  121 (720)
T ss_pred             cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEcc--C-C
Confidence            3444444  4777643   35788999999999999864322      345667888899999999444555554  3 8


Q ss_pred             ceeEEEEccCCceEEE--eecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEE----------EEEe------
Q 020021          101 ESLRLLSLHDNKYLRY--FKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQG----------LLRV------  161 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~--~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~----------~~~~------  161 (332)
                      .++++||+++++.+..  +.||+..|.+++|.++ ...|++|++||.|.|||++-.....          ....      
T Consensus       122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk  201 (720)
T KOG0321|consen  122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK  201 (720)
T ss_pred             ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence            9999999999988766  8999999999999994 5689999999999999987433100          0000      


Q ss_pred             -----------cC------ceeEEEcCCCeEEEEEe-CCEEEEEECccCCC----CCeeEEEecCC---CCCceeEEEcC
Q 020021          162 -----------QG------RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEK----GPFDIFSVGGD---ISDANVVKFSN  216 (332)
Q Consensus       162 -----------~~------~~~~~~~~~~~~~~~~~-~~~i~vwd~~~~~~----~~~~~~~~~~~---~~~v~~v~~s~  216 (332)
                                 +.      +....+.+...+++++. |+.|++||+|....    ++........+   .-.+..+....
T Consensus       202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs  281 (720)
T KOG0321|consen  202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS  281 (720)
T ss_pred             hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence                       00      11233344555666555 89999999986532    11111111111   12456667777


Q ss_pred             CCCEEEEEcCCCeEEEEEccCCeE--eEEeeecCCCCC--cceEEEECCCCCEEEEEcCCCcEEEEECCCCce-EEEecC
Q 020021          217 DGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKPVSRN--STLEASFSPEGMFVISGSGDGSVYAWSVRSGKE-VASWMS  291 (332)
Q Consensus       217 dg~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~--~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~-~~~~~~  291 (332)
                      .|.++.+...|+.|+.|++.+-..  +..+.   ++.+  ....-..+||+.+|++|+.|+..++|.+.+.+. +..+.+
T Consensus       282 sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s---g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G  358 (720)
T KOG0321|consen  282 SGTYLFASCTDNSIYFYNMRSLSISPVAEFS---GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG  358 (720)
T ss_pred             CCCeEEEEecCCcEEEEeccccCcCchhhcc---CcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC
Confidence            788888888899999999865322  12222   1211  112446899999999999999999999988654 456789


Q ss_pred             CCCCCceEEeCCCe-eEEEeccce--EEEecc
Q 020021          292 FDTEPPVIKWTPGS-LMFVTGSSE--LSFWIP  320 (332)
Q Consensus       292 ~~~~v~~l~~sp~~-~~l~t~~~d--~~~w~~  320 (332)
                      |.-+|++++|.|.. .-++|++.|  +++|..
T Consensus       359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             cceEEEEEeeccccCCCceeeccCcceEEEec
Confidence            99999999998854 456666777  888876

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.92  E-value=1.8e-23  Score=184.80  Aligned_cols=239  Identities=16%  Similarity=0.263  Sum_probs=173.1

Q ss_pred             EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc----eEEEee-cccccEEEEEecCCCCeEEEeeCCCc
Q 020021           70 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRT  144 (332)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~----~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~  144 (332)
                      -.+..|...|..+++.|.|..+++++   +|.+|+.||++...    ..+.++ .-.+.|+++.|++.|+.++..+....
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs---~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGS---LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeecc---ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            34667777899999999999999874   59999999986532    223333 23457899999999998888888888


Q ss_pred             EEEEeCCCceEEE-EEEe----------cC----ceeEEEcC--CCeEEEEEeCCEEEEEECccCCCCCeeEE---EecC
Q 020021          145 VLLWDQRAEKCQG-LLRV----------QG----RPAAAYDD--QGLVFAVAFGGYIRMFDARKYEKGPFDIF---SVGG  204 (332)
Q Consensus       145 i~iWd~~~~~~~~-~~~~----------~~----~~~~~~~~--~~~~~~~~~~~~i~vwd~~~~~~~~~~~~---~~~~  204 (332)
                      .++.|- .+.... ..+.          .+    ..+.+++|  ...+++++.|+++|+||+.+.+. ...++   ..++
T Consensus       238 akl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-q~qVik~k~~~g  315 (641)
T KOG0772|consen  238 AKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-QLQVIKTKPAGG  315 (641)
T ss_pred             eeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-heeEEeeccCCC
Confidence            999984 333222 2211          11    22445665  45788899999999999976543 22222   2334


Q ss_pred             CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC--CcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          205 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR--NSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       205 ~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      ....+..|+|++||+.||+|..||.|++||..+...--.+.....|.  ..++++.||+||++|+|-|.|+++++||+..
T Consensus       316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq  395 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ  395 (641)
T ss_pred             cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence            45578999999999999999999999999975433322233322333  3788999999999999999999999999987


Q ss_pred             Cc-eEEEecCCC--CCCceEEeCCCeeEEEeccc
Q 020021          283 GK-EVASWMSFD--TEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       283 ~~-~~~~~~~~~--~~v~~l~~sp~~~~l~t~~~  313 (332)
                      -+ ++....+..  -+-+..+|||+.++++||.+
T Consensus       396 ~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  396 FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             cccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            44 344433322  23467899999999999875

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=8.7e-23  Score=169.41  Aligned_cols=259  Identities=18%  Similarity=0.251  Sum_probs=183.9

Q ss_pred             ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC---EEEEecCCCCCceeEEE
Q 020021           31 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLL  106 (332)
Q Consensus        31 ~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~s~~g~d~~v~v~  106 (332)
                      .+|.-.|.++-|-| |..++.|+|.|.++++||+++.+....+.... .|..-+++|-..   .++.+.   .|..|++.
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~-~VYshamSp~a~sHcLiA~gt---r~~~VrLC  173 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG-KVYSHAMSPMAMSHCLIAAGT---RDVQVRLC  173 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCc-eeehhhcChhhhcceEEEEec---CCCcEEEE
Confidence            46778899888865 66789999999999999999887766665433 355555666443   233332   36789999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCc-eEEEEEEecCceeEEEcCCCeEEEEEeCCEE
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI  184 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  184 (332)
                      |+++|.+-++|.||.+.|.++.|+|... .|+|||.||+||+||++.- .|.                            
T Consensus       174 Di~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf----------------------------  225 (397)
T KOG4283|consen  174 DIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF----------------------------  225 (397)
T ss_pred             eccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee----------------------------
Confidence            9999999999999999999999999766 6789999999999998643 222                            


Q ss_pred             EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE---CC
Q 020021          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF---SP  261 (332)
Q Consensus       185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~---sp  261 (332)
                      ++.|..+....+... .-..|...++.++++.||.++++.+.|.++++|+..+|+..-.-..+-.+ +.....++   +.
T Consensus       226 ~~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~-n~~~~~~~~~~~~  303 (397)
T KOG4283|consen  226 RVLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIH-NQTTSFAVHIQSM  303 (397)
T ss_pred             EEeecccCccCcccc-ccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccc-cccccceEEEeec
Confidence            222222211112111 01124467899999999999999999999999999888642111111111 11111111   23


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccccc
Q 020021          262 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS  323 (332)
Q Consensus       262 dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~  323 (332)
                      +...+.--=.|+++.+.++-.+..+..+..|-..+.|-.|.|+=+.+-+++.|  +..|.|.++
T Consensus       304 ~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l~  367 (397)
T KOG4283|consen  304 DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPALK  367 (397)
T ss_pred             ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccccc
Confidence            33333333456889999999999999999998889999999999999999888  555666543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.7e-23  Score=189.48  Aligned_cols=247  Identities=21%  Similarity=0.334  Sum_probs=197.5

Q ss_pred             ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC--eeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ....+..|++.|+.+...-+++.|+|+|.|.||++|+...+  -|+.++..|...|.+++.......++++  +|.|..|
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaS--gGLD~~I  142 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVAS--GGLDRKI  142 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEe--cCCCccE
Confidence            45668899999999999889999999999999999999876  6888999999999999984433344433  4789999


Q ss_pred             EEEEccCCce----------EEEee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCC
Q 020021          104 RLLSLHDNKY----------LRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ  172 (332)
Q Consensus       104 ~v~d~~~~~~----------~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~  172 (332)
                      .+||++++..          ...+. ||...|.+++-++.|..+++|+..+.+++||.++.+.+.               
T Consensus       143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim---------------  207 (735)
T KOG0308|consen  143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM---------------  207 (735)
T ss_pred             EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccccee---------------
Confidence            9999997732          22334 899999999999999999999999999999998765321               


Q ss_pred             CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC
Q 020021          173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  252 (332)
Q Consensus       173 ~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  252 (332)
                                                  .+.||...|..+..++||+.+++++.||+|++||+...+++.++.   .|..
T Consensus       208 ----------------------------kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~---vH~e  256 (735)
T KOG0308|consen  208 ----------------------------KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI---VHKE  256 (735)
T ss_pred             ----------------------------eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE---eccC
Confidence                                        223577788999999999999999999999999998888888877   4566


Q ss_pred             cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCC--CeeEEEeccceEEEecc
Q 020021          253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP--GSLMFVTGSSELSFWIP  320 (332)
Q Consensus       253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp--~~~~l~t~~~d~~~w~~  320 (332)
                      .++++..+|+=.++++|+.||.|+.=|+.+......+-.-.++|..+..+.  +.-.+.|-.++++.|-.
T Consensus       257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCC
Confidence            799999999999999999999999999988433222222344566666653  33356666677888853

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.9e-21  Score=163.04  Aligned_cols=241  Identities=16%  Similarity=0.256  Sum_probs=189.3

Q ss_pred             EeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC--CCcEEEE
Q 020021           71 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVLLW  148 (332)
Q Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~--Dg~i~iW  148 (332)
                      .+......+..+.|+.+|..+++++.   |.++++||..++++++++..++-.|-.++|..+...++.++.  |.+||+-
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~---dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL   85 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSE---DDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL   85 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecC---CCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence            34344556899999999999988764   789999999999999999988888999999888888888887  9999999


Q ss_pred             eCCCceEEEEEEecCce--eEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc
Q 020021          149 DQRAEKCQGLLRVQGRP--AAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT  225 (332)
Q Consensus       149 d~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~  225 (332)
                      ++.+++++..+..+...  ....+| +..+++++.|++||+||+|..+..  ....+    ..-..++|.|+|-++|++.
T Consensus        86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq--g~l~~----~~~pi~AfDp~GLifA~~~  159 (311)
T KOG1446|consen   86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ--GLLNL----SGRPIAAFDPEGLIFALAN  159 (311)
T ss_pred             EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc--eEEec----CCCcceeECCCCcEEEEec
Confidence            99999999999776543  334445 456777888999999999964422  12222    2234689999999999999


Q ss_pred             CCCeEEEEEccCC--eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCC---ceEE
Q 020021          226 MEGHIHVLDSFRG--TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP---PVIK  300 (332)
Q Consensus       226 ~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v---~~l~  300 (332)
                      ..+.|++||++.-  .+-.++............+.|||||++++-....+.+++.|--+|..+.++..+...-   ...+
T Consensus       160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~  239 (311)
T KOG1446|consen  160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT  239 (311)
T ss_pred             CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence            8889999998753  2333444332223455679999999999999999999999999999888886665332   4677


Q ss_pred             eCCCeeEEEeccce--EEEecc
Q 020021          301 WTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       301 ~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      |+||++.+.++++|  +.+|..
T Consensus       240 ftPds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  240 FTPDSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             ECCCCcEEEEecCCCcEEEEEc
Confidence            99999999999998  666665

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=5.5e-23  Score=187.41  Aligned_cols=306  Identities=19%  Similarity=0.247  Sum_probs=210.5

Q ss_pred             cccccceeEecHHHHhc-------ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee--E-----Ee
Q 020021            7 EREDKVSLELSEEILQS-------MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--K-----TI   72 (332)
Q Consensus         7 ~~~~~~~~~~~~~~~~~-------~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~--~-----~~   72 (332)
                      ++|+++.+..-+++.-.       ..+...+.||++.|.++.|+|++..|+|+|.|+++.||......-+  .     ..
T Consensus       233 ~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~  312 (764)
T KOG1063|consen  233 EREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV  312 (764)
T ss_pred             ccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecc
Confidence            45555555444333322       2223446799999999999999999999999999999988754222  1     22


Q ss_pred             eecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC-c--eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEe
Q 020021           73 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-K--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD  149 (332)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~-~--~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd  149 (332)
                      .+...+...+-|++++..++.-+   .-+..++|--+.. .  ....+.||.+.|+.++|.|.|++|+|+|.|.|-|++-
T Consensus       313 gg~a~GF~g~lw~~n~~~ii~~g---~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa  389 (764)
T KOG1063|consen  313 GGSAGGFWGGLWSPNSNVIIAHG---RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA  389 (764)
T ss_pred             cccccceeeEEEcCCCCEEEEec---ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeec
Confidence            23334467788999997776543   3567899983221 1  2335679999999999999999999999999999985


Q ss_pred             CCCceEE--EEE---EecCc--eeEEEcC-CCeEEEEEeCCEEEEEECccC-----------------------------
Q 020021          150 QRAEKCQ--GLL---RVQGR--PAAAYDD-QGLVFAVAFGGYIRMFDARKY-----------------------------  192 (332)
Q Consensus       150 ~~~~~~~--~~~---~~~~~--~~~~~~~-~~~~~~~~~~~~i~vwd~~~~-----------------------------  192 (332)
                      .- ++..  ..+   +.+++  .+..+-+ +..+++++...-+|+|+....                             
T Consensus       390 ~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG  468 (764)
T KOG1063|consen  390 RW-GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG  468 (764)
T ss_pred             cc-ccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence            43 1111  111   11222  2333334 334444444556677753210                             


Q ss_pred             --CCC------------------------------Cee-------E----EEecCCCCCceeEEEcCCCCEEEEEcCCC-
Q 020021          193 --EKG------------------------------PFD-------I----FSVGGDISDANVVKFSNDGRLMLLTTMEG-  228 (332)
Q Consensus       193 --~~~------------------------------~~~-------~----~~~~~~~~~v~~v~~s~dg~~l~~~~~dg-  228 (332)
                        ++.                              |+.       .    ..+=||-..+.+++.||+|.++|++.... 
T Consensus       469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~  548 (764)
T KOG1063|consen  469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSL  548 (764)
T ss_pred             ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCC
Confidence              000                              000       0    01124446789999999999999987553 


Q ss_pred             ----eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce----EEEecCCCCCCceEE
Q 020021          229 ----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE----VASWMSFDTEPPVIK  300 (332)
Q Consensus       229 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~----~~~~~~~~~~v~~l~  300 (332)
                          .|++|+..+-..+..+.   .|.-.++.++|||||+||+++|.|+++.+|.......    ....+.|..-|++..
T Consensus       549 ~ehAvI~lw~t~~W~~~~~L~---~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs  625 (764)
T KOG1063|consen  549 KEHAVIRLWNTANWLQVQELE---GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS  625 (764)
T ss_pred             ccceEEEEEeccchhhhheec---ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc
Confidence                59999987766655554   4667899999999999999999999999999865432    233578998899999


Q ss_pred             eCCCeeEEEeccce--EEEec
Q 020021          301 WTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       301 ~sp~~~~l~t~~~d--~~~w~  319 (332)
                      |+|++.+|+|+|.|  +++|.
T Consensus       626 W~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  626 WSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             cCcccceeEEecCCceEEEEe
Confidence            99999999999998  66664

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.9e-22  Score=175.08  Aligned_cols=278  Identities=15%  Similarity=0.262  Sum_probs=211.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcC--CCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~  111 (332)
                      .+.|++|.|+|...+|++|+.|++++||-++  .+..++.+.....++..++|.|.|...++.+  |....+..||+++.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s--~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS--GRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec--ccceEEEEeecccc
Confidence            3889999999999999999999999999876  4566788888888999999999999544443  34667999999988


Q ss_pred             ceE--EEeecccc-cEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-eEEEc-CCCeEEEEEeCCEEEE
Q 020021          112 KYL--RYFKGHHD-RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYD-DQGLVFAVAFGGYIRM  186 (332)
Q Consensus       112 ~~~--~~~~~h~~-~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~i~v  186 (332)
                      +..  +-+.|+.. .+....+++++++++.+|..|.|.+-...++..+..++..++. ...++ +...+++++.+|.|.+
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            753  34456654 4556778999999999999999999999998888888877653 23344 4556777778899999


Q ss_pred             EECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC------eEeEEeeecCCCCCcceEEEEC
Q 020021          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPVSRNSTLEASFS  260 (332)
Q Consensus       187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~~~v~~s  260 (332)
                      ||++..  .....+...|.. .-+.++.|++|+++|+|+..|-|.|||..+.      +++..+.   .-...|..+.|+
T Consensus       371 ~nl~~~--~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---NLtt~Itsl~Fn  444 (514)
T KOG2055|consen  371 WNLRQN--SCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---NLTTAITSLQFN  444 (514)
T ss_pred             EecCCc--ceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---hhheeeeeeeeC
Confidence            999865  233344443332 2367889999999999999999999996432      2222221   234567789999


Q ss_pred             CCCCEEEEEcC--CCcEEEEECCCCceEEEecCCC---CCCceEEeCCCeeEEEeccce--EEEec
Q 020021          261 PEGMFVISGSG--DGSVYAWSVRSGKEVASWMSFD---TEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       261 pdg~~l~sgs~--Dg~i~vWd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      ||.+.||.+|.  +..+|+-.+.....-..+...+   +.++||+|||.+.+++.|-.+  +.+|-
T Consensus       445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             cchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence            99999999976  5588888887766555554433   356999999999999988776  55553

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=1.4e-22  Score=182.17  Aligned_cols=287  Identities=16%  Similarity=0.246  Sum_probs=209.0

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC----
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW----   99 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~----   99 (332)
                      .+....|+||++.|.+|+.+|.|.+|++|+.||+||||.+.+|.|+.++.... .|.+++|.|.+...+.+...+-    
T Consensus       390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGECVLI  468 (733)
T ss_pred             ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCceEE
Confidence            34556789999999999999999999999999999999999999999886543 6899999998875444332221    


Q ss_pred             ---------------------------CceeEEEEccCC----ceEEEeecccccEEEEEecCCCCeEEEeeCCC---cE
Q 020021          100 ---------------------------DESLRLLSLHDN----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR---TV  145 (332)
Q Consensus       100 ---------------------------d~~v~v~d~~~~----~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg---~i  145 (332)
                                                 +.++-.|.-...    .-++..-.|...|+.+.|+..|++|++...|+   .|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence                                       122334432210    01234456889999999999999999997754   67


Q ss_pred             EEEeCCCceEEEEEEe-cC-ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEE
Q 020021          146 LLWDQRAEKCQGLLRV-QG-RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL  223 (332)
Q Consensus       146 ~iWd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~  223 (332)
                      .|.++...+...-|+. .+ ...+.|++..-++.++....||+||+.....   ....+.+ ..-+..++++|.|..++.
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqel---vKkL~tg-~kwiS~msihp~GDnli~  624 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQEL---VKKLLTG-SKWISSMSIHPNGDNLIL  624 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHH---HHHHhcC-CeeeeeeeecCCCCeEEE
Confidence            7888766554443422 22 3456788888888899999999999864211   0000001 124677899999999999


Q ss_pred             EcCCCeEEEEEccCCe-EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC-------CCc--eEEEecCCC
Q 020021          224 TTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-------SGK--EVASWMSFD  293 (332)
Q Consensus       224 ~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~-------~~~--~~~~~~~~~  293 (332)
                      ++.|+.+..+|+..+. +.++++   .|...+.+|+|++-=..+++|+.||++.|+.-.       +..  .++.+.+|.
T Consensus       625 gs~d~k~~WfDldlsskPyk~lr---~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~  701 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLSSKPYKTLR---LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE  701 (733)
T ss_pred             ecCCCeeEEEEcccCcchhHHhh---hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence            9999999999997653 334444   467788899999999999999999999999421       111  245566776


Q ss_pred             CC----CceEEeCCCeeEEEeccce--EEEe
Q 020021          294 TE----PPVIKWTPGSLMFVTGSSE--LSFW  318 (332)
Q Consensus       294 ~~----v~~l~~sp~~~~l~t~~~d--~~~w  318 (332)
                      ..    |....|||..-.|.+++.|  +++|
T Consensus       702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eecccceEeecccCCCceEEecCCCceEEee
Confidence            54    7778899999888887766  7666

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=6.4e-22  Score=185.56  Aligned_cols=268  Identities=15%  Similarity=0.201  Sum_probs=203.3

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      -+|+...+.|+|.|+|..|.|++.|+.||+|+...- +.-.++..+...|..  +......++.++.   +++|.+|...
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~--ia~~s~~f~~~s~---~~tv~~y~fp   84 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSS--IACYSNHFLTGSE---QNTVLRYKFP   84 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEE--EeecccceEEeec---cceEEEeeCC
Confidence            368888999999999999999999999999998755 333444333333444  4444557777764   7899999999


Q ss_pred             CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEcCCCeEEEEE-eCCEEEE
Q 020021          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVFAVA-FGGYIRM  186 (332)
Q Consensus       110 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~i~v  186 (332)
                      +++.-..+..-+-+++.++|+.+|+++|.||.|-.|++-++........++.+..  ....+++++.+++++ .||.|++
T Consensus        85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen   85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI  164 (933)
T ss_pred             CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence            9887767777888999999999999999999999999999877766666655433  356778888777766 5899999


Q ss_pred             EECccCCCCCeeE--EE-ec-CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          187 FDARKYEKGPFDI--FS-VG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       187 wd~~~~~~~~~~~--~~-~~-~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      ||+..........  .. .. .....+..++|+|+|..++....|+.|.+|+....+....++....+.. +..+.|||.
T Consensus       165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~-~~~~~wsPn  243 (933)
T KOG1274|consen  165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK-FSDLQWSPN  243 (933)
T ss_pred             EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc-eEEEEEcCC
Confidence            9987543211100  00 00 0012356689999999999999999999999999988887776554433 778899999


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEE
Q 020021          263 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF  308 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  308 (332)
                      |+|||+++.||.|-|||+.+-.. +   -....|.+++|.|++..+
T Consensus       244 G~YiAAs~~~g~I~vWnv~t~~~-~---~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  244 GKYIAASTLDGQILVWNVDTHER-H---EFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             CcEEeeeccCCcEEEEecccchh-c---cccceeEEEecCCCCCee
Confidence            99999999999999999987211 1   223568899999986543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.9e-21  Score=162.78  Aligned_cols=239  Identities=15%  Similarity=0.251  Sum_probs=182.8

Q ss_pred             eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC--eEEEeeCCCcEE
Q 020021           69 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVL  146 (332)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~--~l~s~s~Dg~i~  146 (332)
                      +..+.+|...++.++++  +.+++++++   |.+|++||+.....+..+-.|.+.|+++.|.+.-.  .|+||+.||.|.
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGss---DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSS---DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCC---CCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence            45667788778877664  557776654   99999999999999999999999999999998654  999999999999


Q ss_pred             EEeCCCceEEEEEEecC--ceeEEEcCCCe-EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEE
Q 020021          147 LWDQRAEKCQGLLRVQG--RPAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL  223 (332)
Q Consensus       147 iWd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~  223 (332)
                      +|+...=.+...++.+.  .+....+|.+. -++++.|+.+++||+-..+.....  .+ .  .....+.|+|.|.+++.
T Consensus       111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~--~L-~--~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL--NL-K--NKATLVSWSPQGDHFVV  185 (362)
T ss_pred             EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee--cc-C--CcceeeEEcCCCCEEEE
Confidence            99987766777766542  44567778775 456777999999998765443221  11 1  12345899999998888


Q ss_pred             EcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEe--
Q 020021          224 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW--  301 (332)
Q Consensus       224 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~--  301 (332)
                      +..+ .|-+|.+.+..+..+...    ...+.++.| -++.+|++|++|+.|++||.....+...+.+|..+|..+.+  
T Consensus       186 ~~~~-~i~i~q~d~A~v~~~i~~----~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~  259 (362)
T KOG0294|consen  186 SGRN-KIDIYQLDNASVFREIEN----PKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYT  259 (362)
T ss_pred             Eecc-EEEEEecccHhHhhhhhc----cccceeeee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEe
Confidence            7665 677888776655444331    122334444 47889999999999999999888889999999999999985  


Q ss_pred             CCCeeEEEeccce--EEEeccccc
Q 020021          302 TPGSLMFVTGSSE--LSFWIPDLS  323 (332)
Q Consensus       302 sp~~~~l~t~~~d--~~~w~~~~~  323 (332)
                      .|++.+|+|+|+|  +++|+.+-.
T Consensus       260 ~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  260 NPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             cCCceEEEEeccCceEEEEEcccc
Confidence            6788999999998  888876544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=1.7e-22  Score=182.80  Aligned_cols=250  Identities=20%  Similarity=0.246  Sum_probs=182.9

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEE--eeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      +.+..|-..|+.+.|-|-...|++++.|.|+|.||++++++...  +.+|...|..+||.+....+++.  +|.|+.+.|
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t--GgRDg~ill  171 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCT--GGRDGEILL  171 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceee--ccCCCcEEE
Confidence            45678999999999999667899999999999999999998866  88999999999999988876654  467999999


Q ss_pred             EEccCCce---------------------------EEEeecccccEEE---EEecCCCCeEEEeeC-CCcEEEEeCCCce
Q 020021          106 LSLHDNKY---------------------------LRYFKGHHDRVVS---LSLCSSKDCFISGSL-DRTVLLWDQRAEK  154 (332)
Q Consensus       106 ~d~~~~~~---------------------------~~~~~~h~~~V~~---v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~  154 (332)
                      ||+.....                           +..-+.|...|.+   +.+..|...|||+|. |++|++||++.+.
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence            99853320                           1112234444555   556678889999988 9999999998876


Q ss_pred             EEEEEE------ec-------CceeEEEcCC-CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCC--ceeEEEcCCC
Q 020021          155 CQGLLR------VQ-------GRPAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD--ANVVKFSNDG  218 (332)
Q Consensus       155 ~~~~~~------~~-------~~~~~~~~~~-~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~--v~~v~~s~dg  218 (332)
                      +.....      .+       +..+...+.. ..+++.+.|+.|.+|+++.....+...+.  ++...  -..-..|||+
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s--g~~~~sf~vks~lSpd~  329 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS--GKLNSSFYVKSELSPDD  329 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc--CcccceeeeeeecCCCC
Confidence            543221      11       1223344443 45667778999999999987665543332  22211  1223579999


Q ss_pred             CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC-CCEEEEEcCCCcEEEEECCCC
Q 020021          219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       219 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd~~~~  283 (332)
                      .++++++.|.+.++|.+.+.+.--..  ..+|...++.|+|.|. -.-++|+++|-.++||++.++
T Consensus       330 ~~l~SgSsd~~ayiw~vs~~e~~~~~--l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  330 CSLLSGSSDEQAYIWVVSSPEAPPAL--LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             ceEeccCCCcceeeeeecCccCChhh--hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            99999999999999998876543222  2356677888888763 356677799999999999664

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=1.5e-22  Score=185.13  Aligned_cols=248  Identities=12%  Similarity=0.229  Sum_probs=200.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC--EEEEecCCCCCceeEEEEccC
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSLHD  110 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~s~~g~d~~v~v~d~~~  110 (332)
                      ....|.+|++||+|.+||+|..-|++||||+...+....+.+|...|.++.++....  .++++  ++.|..|-++|+..
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS--asrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS--ASRDRLIHVYDVKR  535 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh--ccCCceEEEEeccc
Confidence            445689999999999999999999999999998888888999999999988876432  23332  34589999999976


Q ss_pred             C-ceEEEeecccccEEEEEecCCC--CeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEE
Q 020021          111 N-KYLRYFKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF  187 (332)
Q Consensus       111 ~-~~~~~~~~h~~~V~~v~~~~~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw  187 (332)
                      . ..+.++.+|...|+++.|...|  ...+|++.|+.|.+--.+..                 .++.++.-..       
T Consensus       536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~-----------------~~g~~f~r~t-------  591 (1080)
T KOG1408|consen  536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA-----------------SSGRLFPRHT-------  591 (1080)
T ss_pred             ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc-----------------cCceeccccc-------
Confidence            3 3577899999999999998766  68999999999776321100                 0011110000       


Q ss_pred             ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEE
Q 020021          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (332)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~  267 (332)
                                  ..+  ....+..++..|..+++++++.|+.|+|||+.+|++...|+....+.+..+.+...|.|.|||
T Consensus       592 ------------~t~--~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a  657 (1080)
T KOG1408|consen  592 ------------QTL--SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA  657 (1080)
T ss_pred             ------------ccc--ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence                        000  012345567788899999999999999999999999999988777778888999999999999


Q ss_pred             EEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          268 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       268 sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      +...|+++.++|.-+++++..+.+|...|+.+.|.+|.++|+++++|  +.+|..
T Consensus       658 tScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  658 TSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             EeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence            99999999999999999999999999999999999999999999999  667754

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=5.9e-22  Score=181.28  Aligned_cols=289  Identities=15%  Similarity=0.202  Sum_probs=191.3

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEe--CCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           29 SFRDYNGRISSMDFHKSSSYLVTAS--DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l~tgs--~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      .+..|..++++++||++|+|+|||=  .-..+|+|++.....+..+..|.+.|++++|+|.++++++... -.|..|.+|
T Consensus        73 lvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGs-QHDMIVnv~  151 (1080)
T KOG1408|consen   73 LVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGS-QHDMIVNVN  151 (1080)
T ss_pred             eecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeecc-ccceEEEhh
Confidence            3556778999999999999999976  6678999999998888999999999999999999999887543 348889999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEE------------------------------
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ------------------------------  156 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~------------------------------  156 (332)
                      |+.-+..... ..-...|..++|+.|+.+++|++. ..|++|.+..++..                              
T Consensus       152 dWr~N~~~as-nkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gi  229 (1080)
T KOG1408|consen  152 DWRVNSSGAS-NKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGI  229 (1080)
T ss_pred             hhhhcccccc-cccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcc
Confidence            8754322111 112456889999999999999986 67899987644310                              


Q ss_pred             ---EEEEe--cCc--------------------eeEEEcCCCeEEEEEeCCEEEEEECccCCCC----------------
Q 020021          157 ---GLLRV--QGR--------------------PAAAYDDQGLVFAVAFGGYIRMFDARKYEKG----------------  195 (332)
Q Consensus       157 ---~~~~~--~~~--------------------~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~----------------  195 (332)
                         .++..  .+.                    ..+..-....++.+..+|.||+|+-.+....                
T Consensus       230 cAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~  309 (1080)
T KOG1408|consen  230 CAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL  309 (1080)
T ss_pred             cccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhc
Confidence               00000  000                    0000012233444456777777764321100                


Q ss_pred             --CeeEEEe--cCCCCCceeEEEcCCC-----------------------------------------------------
Q 020021          196 --PFDIFSV--GGDISDANVVKFSNDG-----------------------------------------------------  218 (332)
Q Consensus       196 --~~~~~~~--~~~~~~v~~v~~s~dg-----------------------------------------------------  218 (332)
                        +-..+..  .....+..++.|++..                                                     
T Consensus       310 ~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~ac  389 (1080)
T KOG1408|consen  310 SQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAAC  389 (1080)
T ss_pred             ccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCccccc
Confidence              0000000  0000111112222111                                                     


Q ss_pred             ---CEEEEEcCCCeEEEEEccCCeEeEEeee----------------------------------cCCCCCcceEEEECC
Q 020021          219 ---RLMLLTTMEGHIHVLDSFRGTLLSTYNV----------------------------------KPVSRNSTLEASFSP  261 (332)
Q Consensus       219 ---~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------------~~~~~~~~~~v~~sp  261 (332)
                         ..+.+++.|++|++||+..+..-..++.                                  .......+.+++.||
T Consensus       390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp  469 (1080)
T KOG1408|consen  390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP  469 (1080)
T ss_pred             CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC
Confidence               2368899999999999875321111100                                  011234566799999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCC---CeeEEEeccceEEEecc
Q 020021          262 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP---GSLMFVTGSSELSFWIP  320 (332)
Q Consensus       262 dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp---~~~~l~t~~~d~~~w~~  320 (332)
                      +|++||+|.--|+++|+++.+.+....+.+|.++|.||.||.   ..++|++++.|..|...
T Consensus       470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~  531 (1080)
T KOG1408|consen  470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVY  531 (1080)
T ss_pred             CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEE
Confidence            999999999999999999999888888889999999999976   35799999999554433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=8.7e-21  Score=167.58  Aligned_cols=293  Identities=16%  Similarity=0.249  Sum_probs=204.5

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCC--------cEEEEEcCCCeeeEEeeecccceeEEEEccCCC-EEEEecCC
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDE--------SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKN   97 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~--------tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~   97 (332)
                      .+-+.||+..|.|+..+||.-.+++|-.-+        .+||||..+...++.+.....+|.+++|++... .++.....
T Consensus        97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~  176 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDD  176 (626)
T ss_pred             cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecC
Confidence            345789999999999999988888766555        499999998888888888788999999998544 34444445


Q ss_pred             CCCceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEE---Ee---cCceeEEEc
Q 020021           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL---RV---QGRPAAAYD  170 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~---~~---~~~~~~~~~  170 (332)
                      +.+..+.|||.+.+......+.-+..|..+.|+|... .++|++ .+.+.+|+.+.+......   .-   ....+..|.
T Consensus       177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~  255 (626)
T KOG2106|consen  177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL  255 (626)
T ss_pred             CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEc
Confidence            6677899999988776666666677888999999555 555554 588999999887654322   11   223467888


Q ss_pred             CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc--------------
Q 020021          171 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF--------------  236 (332)
Q Consensus       171 ~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~--------------  236 (332)
                      +++.++++.++|.|.+|+.+..+..+    ....|...|.+++.-.+|+++- |+.|+.|..||-.              
T Consensus       256 engdviTgDS~G~i~Iw~~~~~~~~k----~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G  330 (626)
T KOG2106|consen  256 ENGDVITGDSGGNILIWSKGTNRISK----QVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFG  330 (626)
T ss_pred             CCCCEEeecCCceEEEEeCCCceEEe----EeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcC
Confidence            99999999999999999986533211    1113444555555555555333 5555555555421              


Q ss_pred             ------------------------------------------------------------------CCeEe--EEe----
Q 020021          237 ------------------------------------------------------------------RGTLL--STY----  244 (332)
Q Consensus       237 ------------------------------------------------------------------~~~~~--~~~----  244 (332)
                                                                                        .-+++  ..+    
T Consensus       331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~  410 (626)
T KOG2106|consen  331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPA  410 (626)
T ss_pred             CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCce
Confidence                                                                              00000  000    


Q ss_pred             -------------------------------eecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc-eEEEe-cC
Q 020021          245 -------------------------------NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-EVASW-MS  291 (332)
Q Consensus       245 -------------------------------~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~-~~~~~-~~  291 (332)
                                                     ..+ ..+.++..++|+|||.+||.||.|+.|+|+-+.... ..... ..
T Consensus       411 ~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~-~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~  489 (626)
T KOG2106|consen  411 ECADFHPSGVVAVGTATGRWFVLDTETQDLVTIH-TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC  489 (626)
T ss_pred             eEeeccCcceEEEeeccceEEEEecccceeEEEE-ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee
Confidence                                           000 013455568999999999999999999999996543 33222 23


Q ss_pred             CCCCCceEEeCCCeeEEEeccce--EEEecccccccc
Q 020021          292 FDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLG  326 (332)
Q Consensus       292 ~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~~~  326 (332)
                      +.+++++|.||+|+++|.+.+.|  +.+|.+.++++.
T Consensus       490 ~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~  526 (626)
T KOG2106|consen  490 SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI  526 (626)
T ss_pred             cCceeEEeeecCCCceEEeccCceEEEEEccccCccc
Confidence            44789999999999999987765  899988777654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=2.2e-20  Score=165.05  Aligned_cols=242  Identities=19%  Similarity=0.290  Sum_probs=181.8

Q ss_pred             cceeEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           25 EVGMSFRDYN-GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        25 ~~~~~l~~h~-~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      +....|.+++ +-|.|++|.++|+ ++||..+|+|.||+..+....++...|+.+|.++|...+|+.+ ++   |-|..|
T Consensus       236 k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SG---gKDRki  310 (626)
T KOG2106|consen  236 KRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SG---GKDRKI  310 (626)
T ss_pred             EEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ec---CccceE
Confidence            3344566655 4599999999884 5699999999999998877777777999999999999888644 33   558888


Q ss_pred             EEEEccCCce----------------------------------------EEEeecccccEEEEEecCCCCeEEEeeCCC
Q 020021          104 RLLSLHDNKY----------------------------------------LRYFKGHHDRVVSLSLCSSKDCFISGSLDR  143 (332)
Q Consensus       104 ~v~d~~~~~~----------------------------------------~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg  143 (332)
                      ..||-.-.+.                                        ..+.++|.+..+.++.+|+.++++|++.|+
T Consensus       311 ~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk  390 (626)
T KOG2106|consen  311 ILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDK  390 (626)
T ss_pred             EeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcc
Confidence            8888321110                                        122458999999999999999999999999


Q ss_pred             cEEEEeCCCceEEEEEEec-CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEE
Q 020021          144 TVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML  222 (332)
Q Consensus       144 ~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  222 (332)
                      .+++|+  ..+++-..... ...++.++|.+.++.+...|..-+.|..+..     +..+..+.++++++.|||||.++|
T Consensus       391 ~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~-----lv~~~~d~~~ls~v~ysp~G~~lA  463 (626)
T KOG2106|consen  391 HVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD-----LVTIHTDNEQLSVVRYSPDGAFLA  463 (626)
T ss_pred             eEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccce-----eEEEEecCCceEEEEEcCCCCEEE
Confidence            999998  44444444332 3346778888844444457889999987521     223323356889999999999999


Q ss_pred             EEcCCCeEEEEEccCCeE-eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          223 LTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       223 ~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      .++.|+.|++|-+..+.. .......  +..+++.+.||+|++||.+-|-|-.|-.|..
T Consensus       464 vgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  464 VGSHDNHIYIYRVSANGRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             EecCCCeEEEEEECCCCcEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            999999999998865433 3333222  2378889999999999999999999999944

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=5.3e-21  Score=177.74  Aligned_cols=188  Identities=15%  Similarity=0.293  Sum_probs=149.8

Q ss_pred             ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE---ecCce--eEEEcC-CCeEEEEEeCCEEEEEECccCCCC
Q 020021          122 DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRP--AAAYDD-QGLVFAVAFGGYIRMFDARKYEKG  195 (332)
Q Consensus       122 ~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~~~~~--~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~  195 (332)
                      ..+++++.++-|++.+-|+..|+|-+++++++-....+-   .+..+  ..+.+. +..+++++.+|.+++||.....  
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~--  526 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV--  526 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc--
Confidence            678899999999999999999999999999987666551   22222  333333 4467888889999999986532  


Q ss_pred             CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcE
Q 020021          196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  275 (332)
Q Consensus       196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i  275 (332)
                      ....+.++   ..+..+.++....+++.+..|-.|+++|..+.+..+.+.   +|.+.+++.+|||||++|++++.|++|
T Consensus       527 l~~~l~l~---~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~---gh~nritd~~FS~DgrWlisasmD~tI  600 (910)
T KOG1539|consen  527 LKKSLRLG---SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW---GHGNRITDMTFSPDGRWLISASMDSTI  600 (910)
T ss_pred             eeeeeccC---CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh---ccccceeeeEeCCCCcEEEEeecCCcE
Confidence            11122221   245667778888889999999999999999888888877   577899999999999999999999999


Q ss_pred             EEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce---EEEe
Q 020021          276 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFW  318 (332)
Q Consensus       276 ~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d---~~~w  318 (332)
                      |+||+.++.++-.+. .+.+.+.++|||+|.+|+|+..|   +.+|
T Consensus       601 r~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  601 RTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             EEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence            999999999887664 45578999999999999998876   6666

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=3.7e-22  Score=174.17  Aligned_cols=215  Identities=18%  Similarity=0.238  Sum_probs=170.7

Q ss_pred             cccceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCee-------eEEeeecccceeEEEEccCCCEEEEe
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATC-------LKTINSKKYGVDLVCFTSHPTTVIYS   94 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~   94 (332)
                      ...+...|+||+++=++++|++.. .+|++++.|++|.+||+.....       ...+.+|...|..++|++....++.+
T Consensus       166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s  245 (422)
T KOG0264|consen  166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS  245 (422)
T ss_pred             cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence            345556799999988899999765 5799999999999999974322       34577899999999999988887766


Q ss_pred             cCCCCCceeEEEEcc--CCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcC
Q 020021           95 SKNGWDESLRLLSLH--DNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD  171 (332)
Q Consensus        95 s~~g~d~~v~v~d~~--~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~  171 (332)
                      +  +.|+.+.+||..  +.++.+...+|.++|++++|+| ++..|||||.|++|++||+|.-+.                
T Consensus       246 v--~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~----------------  307 (422)
T KOG0264|consen  246 V--GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK----------------  307 (422)
T ss_pred             e--cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----------------
Confidence            5  348899999998  5667788899999999999999 556899999999999999875421                


Q ss_pred             CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeE--------
Q 020021          172 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS--------  242 (332)
Q Consensus       172 ~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~--------  242 (332)
                                                ......+|...|..|.|||.. +++++++.|+.+.+||+.+-...+        
T Consensus       308 --------------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg  361 (422)
T KOG0264|consen  308 --------------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG  361 (422)
T ss_pred             --------------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence                                      112334566788899999976 677888999999999985421111        


Q ss_pred             ---EeeecCCCCCcceEEEECCCCC-EEEEEcCCCcEEEEECC
Q 020021          243 ---TYNVKPVSRNSTLEASFSPEGM-FVISGSGDGSVYAWSVR  281 (332)
Q Consensus       243 ---~~~~~~~~~~~~~~v~~spdg~-~l~sgs~Dg~i~vWd~~  281 (332)
                         .+-.+.+|...|....|+|+.. .++|+++|+.+.||.+.
T Consensus       362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence               1234567888899999999764 67788999999999986

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=9.5e-23  Score=179.82  Aligned_cols=231  Identities=17%  Similarity=0.260  Sum_probs=188.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCee--eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~  110 (332)
                      -...|.++.+.|||+.|++|+.-.++-|||+.....  ...+.........++.+|+.+..+++.+   |+.|+|||+.+
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs---dGnI~vwDLhn  540 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS---DGNIAVWDLHN  540 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc---CCcEEEEEccc
Confidence            446688899999999999999999999999975433  2334333344566788999988887775   78999999999


Q ss_pred             CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECc
Q 020021          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR  190 (332)
Q Consensus       111 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~  190 (332)
                      ...++.|+||++.+.++++++||..|.||+-|.++|.||+++++.....                               
T Consensus       541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-------------------------------  589 (705)
T KOG0639|consen  541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-------------------------------  589 (705)
T ss_pred             ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-------------------------------
Confidence            9999999999999999999999999999999999999999876532110                               


Q ss_pred             cCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021          191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs  270 (332)
                           .        -.+.|.++.++|.+..+++|-.++.+-+.-....+.. .+   ..|..+|.++.|++.|+++++.+
T Consensus       590 -----d--------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky-ql---hlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  590 -----D--------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY-QL---HLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             -----h--------hhhhheecccCCCccceeeecccCcEEEEecCCccce-ee---cccccEEEEEEecccCceeeecC
Confidence                 0        0134667788999999999999999998876554432 22   25778999999999999999999


Q ss_pred             CCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceE
Q 020021          271 GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSEL  315 (332)
Q Consensus       271 ~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~  315 (332)
                      .|.-+..|...-|..+...+ ....|.+...|-|.++++||++|.
T Consensus       653 kDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  653 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             chhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCc
Confidence            99999999998888776543 345788899999999999999983

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=7.4e-21  Score=158.79  Aligned_cols=246  Identities=11%  Similarity=0.226  Sum_probs=177.5

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC----CCeeeEEeeecccceeEEEEcc--CCCEEEEecCCCCCceeE
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT----AATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~----~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~s~~g~d~~v~  104 (332)
                      .+|.+-|.+++|++-|+++||++.|.+|+|||..    +-.|....+.|...|..+.|.+  .|+-+++++   +|.+++
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS---~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS---YDRTVS   86 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe---cCCcee
Confidence            5799999999999999999999999999999964    3456777889999999988865  344445454   599999


Q ss_pred             EEEccC--Cc-------eEEEeecccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEE------EEE----ecC
Q 020021          105 LLSLHD--NK-------YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQG------LLR----VQG  163 (332)
Q Consensus       105 v~d~~~--~~-------~~~~~~~h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~------~~~----~~~  163 (332)
                      +|.-..  -+       ...++......|+.+.|+|.  |-.+|+++.||++||++.-..-.+.      .++    .++
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            997521  11       24567778889999999984  5689999999999999854322111      111    111


Q ss_pred             c---e--eEEEcC---CCeEEEEEeCC------EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC----CEEEEEc
Q 020021          164 R---P--AAAYDD---QGLVFAVAFGG------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTT  225 (332)
Q Consensus       164 ~---~--~~~~~~---~~~~~~~~~~~------~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg----~~l~~~~  225 (332)
                      +   +  +..+.+   ...+++++.+.      .+.||......+.-..+..+.++..+|+.++|+|.-    .++++++
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence            1   1  222222   23577777765      889997543322222344556788899999999963    5789999


Q ss_pred             CCCeEEEEEccCC------------e-----EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          226 MEGHIHVLDSFRG------------T-----LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       226 ~dg~i~i~d~~~~------------~-----~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      .|| |+||.+...            .     .+........|...++++.|.-.|..|+|.|.||+||+|..
T Consensus       247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            999 999998621            0     11112223467789999999999999999999999999965

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=4.1e-20  Score=171.87  Aligned_cols=302  Identities=12%  Similarity=0.239  Sum_probs=229.3

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      ++-+.+.+|++|...|+++.=+|-=+.+|.|-.||+|.|+++..++.+.+++.....|+.++|..+|..+++++.  ..+
T Consensus       190 rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~--~~G  267 (910)
T KOG1539|consen  190 RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR--SNG  267 (910)
T ss_pred             ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc--CCc
Confidence            456778899999999999998888889999999999999999999999999876678999999999997766542  257


Q ss_pred             eeEEEEccCCceEEEee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-----------------EEEEE----
Q 020021          102 SLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-----------------CQGLL----  159 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-----------------~~~~~----  159 (332)
                      .+-+||++..+.+..++ .|.+.|....|.+....++|++.|..+++|=+.++.                 |+..+    
T Consensus       268 ~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g  347 (910)
T KOG1539|consen  268 DMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG  347 (910)
T ss_pred             eEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence            89999999988777666 688899999999988899999999999998443211                 11000    


Q ss_pred             --Eec----------------------C--------------------ceeEEEc--C-----CCeEEEEEe-CCEEEEE
Q 020021          160 --RVQ----------------------G--------------------RPAAAYD--D-----QGLVFAVAF-GGYIRMF  187 (332)
Q Consensus       160 --~~~----------------------~--------------------~~~~~~~--~-----~~~~~~~~~-~~~i~vw  187 (332)
                        ...                      .                    .+...+.  .     -..++++.. +...+.|
T Consensus       348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW  427 (910)
T KOG1539|consen  348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW  427 (910)
T ss_pred             EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence              000                      0                    0001110  0     013444443 3577889


Q ss_pred             ECccCCCCCeeEEE--ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021          188 DARKYEKGPFDIFS--VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (332)
Q Consensus       188 d~~~~~~~~~~~~~--~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~  265 (332)
                      +.++...+......  .......+.+|+.|+-|.+.+.|...|.|-+|++.+|-....|-..+.|..+++.++..--++.
T Consensus       428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~  507 (910)
T KOG1539|consen  428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRL  507 (910)
T ss_pred             eccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCce
Confidence            88876544332211  1112356889999999999999999999999999999877777545567889999999888899


Q ss_pred             EEEEcCCCcEEEEECCCCceEEEe-----------------------------------------cCCCCCCceEEeCCC
Q 020021          266 VISGSGDGSVYAWSVRSGKEVASW-----------------------------------------MSFDTEPPVIKWTPG  304 (332)
Q Consensus       266 l~sgs~Dg~i~vWd~~~~~~~~~~-----------------------------------------~~~~~~v~~l~~sp~  304 (332)
                      ++|++.||-+..||..++..+..+                                         .+|+..+++++||||
T Consensus       508 ~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D  587 (910)
T KOG1539|consen  508 LVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD  587 (910)
T ss_pred             EEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence            999999999999999876533222                                         268999999999999


Q ss_pred             eeEEEeccce--EEEeccccccc
Q 020021          305 SLMFVTGSSE--LSFWIPDLSKL  325 (332)
Q Consensus       305 ~~~l~t~~~d--~~~w~~~~~~~  325 (332)
                      |+.+++++.|  +++||.....|
T Consensus       588 grWlisasmD~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  588 GRWLISASMDSTIRTWDLPTGTL  610 (910)
T ss_pred             CcEEEEeecCCcEEEEeccCcce
Confidence            9999999998  66676555443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2e-21  Score=176.45  Aligned_cols=241  Identities=16%  Similarity=0.293  Sum_probs=194.2

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEee
Q 020021           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK  118 (332)
Q Consensus        39 ~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~  118 (332)
                      -++|+. .+.|| .+....|.+|+..++........+...|+.+.++++|..++.+..   ++.|.+||.++.+.+..+.
T Consensus       182 lldWss-~n~la-Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~---~g~v~iwD~~~~k~~~~~~  256 (484)
T KOG0305|consen  182 LLDWSS-ANVLA-VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTS---DGTVQIWDVKEQKKTRTLR  256 (484)
T ss_pred             Hhhccc-CCeEE-EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeec---CCeEEEEehhhcccccccc
Confidence            356763 34554 555678999999999876666655778999999999999999876   7799999999999999999


Q ss_pred             c-ccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCe
Q 020021          119 G-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF  197 (332)
Q Consensus       119 ~-h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~  197 (332)
                      + |...|.+++|.  +..+.+|+.|+.|..+|++..+....                                       
T Consensus       257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~---------------------------------------  295 (484)
T KOG0305|consen  257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS---------------------------------------  295 (484)
T ss_pred             CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh---------------------------------------
Confidence            9 99999999998  57899999999999999876542110                                       


Q ss_pred             eEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC-CCCEEEEE--cCCCc
Q 020021          198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISG--SGDGS  274 (332)
Q Consensus       198 ~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp-dg~~l~sg--s~Dg~  274 (332)
                         .+.+|...|..+++++|+.++++|+.|+.+.|||....+++..+.   .|...|-+++|+| ....||+|  +.|++
T Consensus       296 ---~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~  369 (484)
T KOG0305|consen  296 ---TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRC  369 (484)
T ss_pred             ---hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccE
Confidence               022455678889999999999999999999999997777776665   5778888999999 67788888  67999


Q ss_pred             EEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc----eEEEecc-cccccccccccC
Q 020021          275 VYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS----ELSFWIP-DLSKLGAYVGRK  332 (332)
Q Consensus       275 i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~----d~~~w~~-~~~~~~~~~~~~  332 (332)
                      |++||..+++.+...-. ...|..|.|+|..+-++++-+    ++.+|.+ ...++..+.||.
T Consensus       370 i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~  431 (484)
T KOG0305|consen  370 IKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT  431 (484)
T ss_pred             EEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence            99999999998877543 457999999999866665432    4999985 666777777763

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=4.6e-23  Score=188.68  Aligned_cols=221  Identities=20%  Similarity=0.386  Sum_probs=179.7

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~  125 (332)
                      +..++....+..+++||...      +..|...+.++......+.++.   +|+|..+.+|.+.....+..|.+|..+|.
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~---Gg~~~k~~L~~i~kp~~i~S~~~hespIe   74 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVT---GGEDEKVNLWAIGKPNAITSLTGHESPIE   74 (825)
T ss_pred             ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeecc---CCCceeeccccccCCchhheeeccCCcce
Confidence            34566777788889998753      2344444555444334444443   47788999999888778888999999999


Q ss_pred             EEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCC
Q 020021          126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD  205 (332)
Q Consensus       126 ~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~  205 (332)
                      ++.|+++...|++|+.||+|++||++..+...+                                           +.++
T Consensus        75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrt-------------------------------------------Ltgh  111 (825)
T KOG0267|consen   75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT-------------------------------------------LTGH  111 (825)
T ss_pred             eeecCcchhhhcccccCCceeeeehhhhhhhhh-------------------------------------------hhcc
Confidence            999999999999999999999999976553322                                           1234


Q ss_pred             CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       206 ~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                      ..++..+.|+|-+.+.+.++.|..+.+||.+...+.+.+.   .|...+..+.|+|+|+++++|++|.+++|||...|+.
T Consensus       112 ~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~---s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~  188 (825)
T KOG0267|consen  112 LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK---SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL  188 (825)
T ss_pred             ccCcceeeeccceEEeccccccccceehhhhccCceeeec---CCcceeEEEeecCCCceeeccCCcceeeeeccccccc
Confidence            4567788899999999999999999999998666666665   3556667789999999999999999999999999999


Q ss_pred             EEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccc
Q 020021          286 VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       286 ~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~  321 (332)
                      +..|..|.+.+..+.|+|..-++++|+.|  +++|+.+
T Consensus       189 ~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  189 SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             ccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            99999999999999999999999999998  7778765

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3e-20  Score=155.73  Aligned_cols=274  Identities=18%  Similarity=0.324  Sum_probs=197.8

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY  116 (332)
Q Consensus        37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~  116 (332)
                      -.|+.|++-|.+||.|..||.|-|||+.|...-+.+.+|-.+|.++||+++|.++++++.   |..+.+||+-.|.+++.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~---D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR---DWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC---CceeEEEeccCCCceeE
Confidence            678999999999999999999999999999888889999999999999999999998875   88999999999998877


Q ss_pred             eecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEEec------Cc-eeEEEcCCCeEEEEE-eCCEEEEE
Q 020021          117 FKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQ------GR-PAAAYDDQGLVFAVA-FGGYIRMF  187 (332)
Q Consensus       117 ~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~-~~~~i~vw  187 (332)
                      ++ ..++|+.+.|+|.. +.++..-.+..-.+-++..++ ...+...      .. ....+++.+.++.+| ..|.+-++
T Consensus       103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY  180 (405)
T ss_pred             EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence            76 67899999999944 344444455544555554322 1122111      01 123466777666555 56999999


Q ss_pred             ECccCCCC-CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC-------CeEeEEeeecC-CCCCcceEEE
Q 020021          188 DARKYEKG-PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------GTLLSTYNVKP-VSRNSTLEAS  258 (332)
Q Consensus       188 d~~~~~~~-~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~-~~~~~~~~v~  258 (332)
                      |..+.+-- .+.+..    ...+..+.|+..|+.++..+.|+.|+.++...       +++.-..+... .....-.+++
T Consensus       181 ~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc  256 (405)
T KOG1273|consen  181 DAETLECVASFRITS----VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC  256 (405)
T ss_pred             ecchheeeeeeeech----heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence            98765311 111111    13577789999999999999999999999752       11110000000 0011123579


Q ss_pred             ECCCCCEEEEEcC-CCcEEEEECCCCceEEEecCCC-CCCceEEeCCCeeEEEeccc-eEEEec
Q 020021          259 FSPEGMFVISGSG-DGSVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVTGSS-ELSFWI  319 (332)
Q Consensus       259 ~spdg~~l~sgs~-Dg~i~vWd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~t~~~-d~~~w~  319 (332)
                      ||.||.|+.+++. -..+|||.-..|..++-+-+-. .....+.|+|-.-.+++-.+ -+.+|.
T Consensus       257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~  320 (405)
T KOG1273|consen  257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWA  320 (405)
T ss_pred             ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEE
Confidence            9999999988864 4489999999999998886655 45677899999887777544 488884

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.7e-20  Score=161.28  Aligned_cols=307  Identities=12%  Similarity=0.154  Sum_probs=210.0

Q ss_pred             HHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC------CeeeEEeee-cccceeEEEEccCCCEE
Q 020021           19 EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------ATCLKTINS-KKYGVDLVCFTSHPTTV   91 (332)
Q Consensus        19 ~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~~   91 (332)
                      ..++.--..|.+.+|.+.|++|.||.++.+|++|+.|..+++|+++.      .+.+..... |...|.+++|....+++
T Consensus        41 ~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~  120 (609)
T KOG4227|consen   41 DFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFL  120 (609)
T ss_pred             hhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeE
Confidence            33333334567889999999999999999999999999999999864      234443333 34678899999888777


Q ss_pred             EEecCCCCCceeEEEEccCCceEEEeec--ccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-EEEEEEecCc----
Q 020021           92 IYSSKNGWDESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGR----  164 (332)
Q Consensus        92 ~~~s~~g~d~~v~v~d~~~~~~~~~~~~--h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~~~----  164 (332)
                      +++   +-+++|.+.|+++.+.+..+..  ..+.|..++.+|..+.|++.+.||.|.+||.+... ....+.....    
T Consensus       121 ~SG---~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F  197 (609)
T KOG4227|consen  121 YSG---ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF  197 (609)
T ss_pred             ecC---CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence            765   3478999999999887776642  23489999999999999999999999999998655 2333322221    


Q ss_pred             eeEEEcC-CCeEEEEE-eCCEEEEEECccCCCCCee---EEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe
Q 020021          165 PAAAYDD-QGLVFAVA-FGGYIRMFDARKYEKGPFD---IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  239 (332)
Q Consensus       165 ~~~~~~~-~~~~~~~~-~~~~i~vwd~~~~~~~~~~---~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~  239 (332)
                      ..+.++| ...++++. ..+.+-+||.|.....-+.   ...+.........+.|+|.|..+++--....-..||..+..
T Consensus       198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R  277 (609)
T KOG4227|consen  198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR  277 (609)
T ss_pred             eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence            2345555 33444444 4678999999875433221   11111111233668899999988876666666677876533


Q ss_pred             EeEEeeecCCC----CCc-ceEEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------eEEEecC
Q 020021          240 LLSTYNVKPVS----RNS-TLEASFSPEGMFVISGSGDGSVYAWSVRSGK-----------------------EVASWMS  291 (332)
Q Consensus       240 ~~~~~~~~~~~----~~~-~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~-----------------------~~~~~~~  291 (332)
                      +. .+......    ..+ +-+++| .+.+.+++||.|-.|++|.+....                       .+..+.+
T Consensus       278 ~~-V~k~D~N~~GY~N~~T~KS~~F-~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG  355 (609)
T KOG4227|consen  278 CF-VLKSDHNPNGYCNIKTIKSMTF-IDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG  355 (609)
T ss_pred             ce-eEeccCCCCcceeeeeeeeeee-ecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence            21 12111011    111 123455 566779999999999999885311                       1223568


Q ss_pred             CCCCCceEEeCCCeeEEEeccce--EEEeccccccccccccc
Q 020021          292 FDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLGAYVGR  331 (332)
Q Consensus       292 ~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~~~~~~~~  331 (332)
                      |-.-++.+.|+|-..++++.+-+  +++|.+-.+ .+.|+||
T Consensus       356 HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~-P~~~D~~  396 (609)
T KOG4227|consen  356 HRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRL-PWSYDLP  396 (609)
T ss_pred             ccccccceeecCCcceEeccchhhheeccccccC-CcccCCc
Confidence            88889999999999999887765  888987653 3777664

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=6e-21  Score=160.08  Aligned_cols=216  Identities=19%  Similarity=0.303  Sum_probs=156.8

Q ss_pred             eEEEEccCCce-----EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-----EEE-EEEecCceeEEEcC
Q 020021          103 LRLLSLHDNKY-----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-----CQG-LLRVQGRPAAAYDD  171 (332)
Q Consensus       103 v~v~d~~~~~~-----~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-----~~~-~~~~~~~~~~~~~~  171 (332)
                      .+-|+-+..+.     +..|+||.+.|++++|+.||+.|+|++.|++|++|+++.-.     ++. .+.......+.|.|
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap  142 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP  142 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence            44555554443     34578999999999999999999999999999999976411     111 11222223455555


Q ss_pred             C--CeEEEEEeCCEEEEEECccCCCCCeeE--EE------ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEe
Q 020021          172 Q--GLVFAVAFGGYIRMFDARKYEKGPFDI--FS------VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  241 (332)
Q Consensus       172 ~--~~~~~~~~~~~i~vwd~~~~~~~~~~~--~~------~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~  241 (332)
                      +  ..++++..++.+++|.+.....+....  ..      ...|..++..+.....+.+|++++.|..|.+|++. |+++
T Consensus       143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L  221 (420)
T KOG2096|consen  143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL  221 (420)
T ss_pred             CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence            4  456677778999999875543332211  11      11234566777888889999999999999999988 8888


Q ss_pred             EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC---CCc-----eEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          242 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR---SGK-----EVASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~---~~~-----~~~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      ..+...   .......+.||+|+|+|+++----++||.+-   .|.     .+..+.+|.+.|..++|||+.++.+|+|.
T Consensus       222 ~~idtn---q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk  298 (420)
T KOG2096|consen  222 QSIDTN---QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK  298 (420)
T ss_pred             eeeccc---cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence            776532   1223357899999999999888889999873   222     24567899999999999999999999999


Q ss_pred             e--EEEecccc
Q 020021          314 E--LSFWIPDL  322 (332)
Q Consensus       314 d--~~~w~~~~  322 (332)
                      |  .++|+.+.
T Consensus       299 DG~wriwdtdV  309 (420)
T KOG2096|consen  299 DGKWRIWDTDV  309 (420)
T ss_pred             CCcEEEeeccc
Confidence            8  67776543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=1.6e-20  Score=156.06  Aligned_cols=209  Identities=20%  Similarity=0.337  Sum_probs=153.7

Q ss_pred             ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe------------ee---EEeeecccceeEEEEccCCCEEEEe
Q 020021           31 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAAT------------CL---KTINSKKYGVDLVCFTSHPTTVIYS   94 (332)
Q Consensus        31 ~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~------------~~---~~~~~~~~~v~~~~~~~~~~~~~~~   94 (332)
                      +.|.|.|+++.+.+ .|+|+++|+.|+.+-+||++...            |+   .--..|.++|..+-|.|..+.++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            56999999999975 68999999999999999997533            11   1123577889999999999888876


Q ss_pred             cCCCCCceeEEEEccCCceEEEeecccccEEEEEecCC---CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcC
Q 020021           95 SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD  171 (332)
Q Consensus        95 s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~---~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~  171 (332)
                      +  ++|.+++|||.++-+....|+ -.+.|.+-+++|-   .-.+|+|..|-.|++-|+.++.+-..+.           
T Consensus       120 s--SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-----------  185 (397)
T KOG4283|consen  120 S--SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-----------  185 (397)
T ss_pred             c--cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-----------
Confidence            5  469999999999877665554 4566777777773   2356677777889999998887654443           


Q ss_pred             CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE-EEEEcCCCeEEEEEccCC-eEeEE------
Q 020021          172 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRG-TLLST------  243 (332)
Q Consensus       172 ~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~-l~~~~~dg~i~i~d~~~~-~~~~~------  243 (332)
                                                      ||...|.++.+||...+ +++++.||.|++||++.. .+...      
T Consensus       186 --------------------------------GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~  233 (397)
T KOG4283|consen  186 --------------------------------GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT  233 (397)
T ss_pred             --------------------------------cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC
Confidence                                            44555666777776544 455677777777776543 11111      


Q ss_pred             -----eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          244 -----YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       244 -----~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                           .+..+.|...+..++|+.|++++++++.|..+++|+..+|+.
T Consensus       234 k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  234 KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence                 122234566778899999999999999999999999988764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=2.1e-21  Score=179.07  Aligned_cols=236  Identities=20%  Similarity=0.331  Sum_probs=168.1

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCC----eeeEEeeecc---cceeEEEEccCC-CEEEEecCCCCCceeEEEE
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKK---YGVDLVCFTSHP-TTVIYSSKNGWDESLRLLS  107 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~----~~~~~~~~~~---~~v~~~~~~~~~-~~~~~~s~~g~d~~v~v~d  107 (332)
                      ...+|+..++-+.++-++. ..++||.++..    .|.......+   ..+..|.|.... +.+++++.   .+.|.+||
T Consensus        41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~---nG~i~vWd  116 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST---NGVISVWD  116 (839)
T ss_pred             ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC---CCcEEEEe
Confidence            3455666788888877765 45788877532    2222221111   122334555333 34566655   56899999


Q ss_pred             ccC---CceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCE
Q 020021          108 LHD---NKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGY  183 (332)
Q Consensus       108 ~~~---~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (332)
                      +..   .+.+..|..|...|.+++|++ ...+|+|||+||+|++||++..+...++..                      
T Consensus       117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~----------------------  174 (839)
T KOG0269|consen  117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS----------------------  174 (839)
T ss_pred             cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc----------------------
Confidence            987   555678899999999999998 567999999999999999987664433321                      


Q ss_pred             EEEEECccCCCCCeeEEEecCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                                           ....++.|.|+| .+.+++++.+.|.+++||++....-.  .....|.+++.++.|+|+
T Consensus       175 ---------------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~--~k~~AH~GpV~c~nwhPn  231 (839)
T KOG0269|consen  175 ---------------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE--KKLTAHNGPVLCLNWHPN  231 (839)
T ss_pred             ---------------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH--HHhhcccCceEEEeecCC
Confidence                                 223577889988 46788999999999999998765321  112357889999999999


Q ss_pred             CCEEEEEcCCCcEEEEECCCCce--EEEecCCCCCCceEEeCCCee-EEEeccc--e--EEEeccc
Q 020021          263 GMFVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSL-MFVTGSS--E--LSFWIPD  321 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~~~~~~--~~~~~~~~~~v~~l~~sp~~~-~l~t~~~--d--~~~w~~~  321 (332)
                      +.+|||||.|+.|+|||+.+.+.  +.++. -.+++.+|+|.|+.. +|++.+.  |  +.+|+.-
T Consensus       232 r~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  232 REWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             CceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence            99999999999999999976443  23332 236789999999875 6777654  3  8888764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=4.4e-21  Score=155.47  Aligned_cols=212  Identities=13%  Similarity=0.191  Sum_probs=158.2

Q ss_pred             cceeEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           25 EVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~--dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      .+..+|.||++||..++|..  .|++||++++|+.|+||.-+++.  .......|...|.+++|.|+.-.+..++. ..|
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca-sSD  125 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA-SSD  125 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEe-eCC
Confidence            67888999999999999964  68999999999999999988773  33455678888999999998765433332 238


Q ss_pred             ceeEEEEccCC-c--eEEEeecccccEEEEEecCC---C-----------CeEEEeeCCCcEEEEeCCCceEEEEEEecC
Q 020021          101 ESLRLLSLHDN-K--YLRYFKGHHDRVVSLSLCSS---K-----------DCFISGSLDRTVLLWDQRAEKCQGLLRVQG  163 (332)
Q Consensus       101 ~~v~v~d~~~~-~--~~~~~~~h~~~V~~v~~~~~---~-----------~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~  163 (332)
                      +.|.+.+..+. .  ..+....|.-.|++++|.|.   |           ++|+||+.|..|+||+...+.....-    
T Consensus       126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~----  201 (299)
T KOG1332|consen  126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER----  201 (299)
T ss_pred             CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh----
Confidence            89999987664 1  23456789999999999986   4           67999999999999987654211000    


Q ss_pred             ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC----CEEEEEcCCCeEEEEEccCCe
Q 020021          164 RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTTMEGHIHVLDSFRGT  239 (332)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg----~~l~~~~~dg~i~i~d~~~~~  239 (332)
                                                           .+++|..-++.++..|.-    .++++++.||++.||.... +
T Consensus       202 -------------------------------------~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~-e  243 (299)
T KOG1332|consen  202 -------------------------------------TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE-E  243 (299)
T ss_pred             -------------------------------------hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC-c
Confidence                                                 123454556677777753    6799999999999998652 1


Q ss_pred             EeEEeeec--CCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          240 LLSTYNVK--PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       240 ~~~~~~~~--~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                       .......  ......+.++.||+.|+.|+.++.|..+++|.-
T Consensus       244 -~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  244 -YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             -cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence             1111100  112356789999999999999999999999964

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=4.8e-20  Score=161.19  Aligned_cols=297  Identities=16%  Similarity=0.223  Sum_probs=209.5

Q ss_pred             hcccceeEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCe----eeEEeeecccceeEEEEccCCCEEEEec
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg--~~l~tgs~D~tv~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      ..++.....+-|.+.|++++|+|..  +++|.|..-|.|-+||+.+.+    .+..+..|..+|.++.|+|.....++++
T Consensus       174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence            4455566678899999999999976  478999999999999995322    2344566777899999999887655554


Q ss_pred             CCCCCceeEEEEccCCceEE--EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceE-EEEEEecC--ceeEEEc
Q 020021           96 KNGWDESLRLLSLHDNKYLR--YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQG--RPAAAYD  170 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~--~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~-~~~~~~~~--~~~~~~~  170 (332)
                        ++|+++|+-|++.+..-.  .+..-......++|+.+...++.+..=|...+||.+++.. ...+.++.  .....+.
T Consensus       254 --SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  254 --SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN  331 (498)
T ss_pred             --ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence              369999999998865433  3332344567888998888888888778999999987764 22222222  2233444


Q ss_pred             C--CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc----CCeEeEEe
Q 020021          171 D--QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF----RGTLLSTY  244 (332)
Q Consensus       171 ~--~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~----~~~~~~~~  244 (332)
                      |  +..+++++.|++.++||+|+....+-.++..-.|.-.|+++.|||+|-.+++.+.|..|+|||..    .-+++.++
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I  411 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI  411 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence            4  34566677899999999998765433344444566789999999998779999999999999972    22222222


Q ss_pred             eecCCCCC--cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC-CCCce-EEeCCCeeEEEeccc-eEEEec
Q 020021          245 NVKPVSRN--STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD-TEPPV-IKWTPGSLMFVTGSS-ELSFWI  319 (332)
Q Consensus       245 ~~~~~~~~--~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~-~~v~~-l~~sp~~~~l~t~~~-d~~~w~  319 (332)
                      .....+..  .....+|.||-.+++.|-.-..|-|+|-..++.+..+..-. ..|.+ ..|+|-+..+++|+. -.++|.
T Consensus       412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v  491 (498)
T KOG4328|consen  412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV  491 (498)
T ss_pred             eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence            21111112  33467899999999999888899999987777676653322 23444 669998886666654 366665


Q ss_pred             c
Q 020021          320 P  320 (332)
Q Consensus       320 ~  320 (332)
                      +
T Consensus       492 f  492 (498)
T KOG4328|consen  492 F  492 (498)
T ss_pred             E
Confidence            4

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=2.1e-20  Score=159.83  Aligned_cols=246  Identities=17%  Similarity=0.273  Sum_probs=177.5

Q ss_pred             eEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEEcCC----------------CeeeEEeeecccceeEEEEccCCC
Q 020021           28 MSFRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTA----------------ATCLKTINSKKYGVDLVCFTSHPT   89 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg--~~l~tgs~D~tv~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~   89 (332)
                      +...+|.+.|+-+.-++-+  .+.++=+.-|.|.|||+..                .+.+.++.+|...-..++|+|...
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~  224 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT  224 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence            3456788899988888765  5667777889999999742                234667777776667889998555


Q ss_pred             EEEEecCCCCCceeEEEEccCCce---EEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEecCce
Q 020021           90 TVIYSSKNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP  165 (332)
Q Consensus        90 ~~~~~s~~g~d~~v~v~d~~~~~~---~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~  165 (332)
                      ..+.+  +..-..|++|...++.-   ..-+.+|+..|-.++|+|. ...|+|||.||+|+|||++.+.....+.     
T Consensus       225 g~Lls--GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-----  297 (440)
T KOG0302|consen  225 GRLLS--GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-----  297 (440)
T ss_pred             ccccc--CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-----
Confidence            42222  12345689999887653   2346789999999999995 4589999999999999998763211110     


Q ss_pred             eEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC---CeEeE
Q 020021          166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTLLS  242 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~---~~~~~  242 (332)
                                                          ..-|.++|+.+.++..-.+|++|+.||+++|||++.   ++++.
T Consensus       298 ------------------------------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA  341 (440)
T KOG0302|consen  298 ------------------------------------TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA  341 (440)
T ss_pred             ------------------------------------eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce
Confidence                                                012346789999999888999999999999999975   45566


Q ss_pred             EeeecCCCCCcceEEEECCC-CCEEEEEcCCCcEEEEECCCCce----------------EEEecCCC--CCCceEEeCC
Q 020021          243 TYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSGKE----------------VASWMSFD--TEPPVIKWTP  303 (332)
Q Consensus       243 ~~~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd~~~~~~----------------~~~~~~~~--~~v~~l~~sp  303 (332)
                      .|.   .|..+|+++.|+|. ...||++|+|..|.|||+.-..-                ...+..|.  ..+..|.|++
T Consensus       342 ~fk---~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~  418 (440)
T KOG0302|consen  342 TFK---YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHR  418 (440)
T ss_pred             eEE---eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheecc
Confidence            666   46789999999984 56778889999999999964321                11223342  4678899999


Q ss_pred             C--eeEEEeccceEEEec
Q 020021          304 G--SLMFVTGSSELSFWI  319 (332)
Q Consensus       304 ~--~~~l~t~~~d~~~w~  319 (332)
                      +  |.++.|+-....+|-
T Consensus       419 QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  419 QIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             CCCCeEEEecccceeEEE
Confidence            6  444444545577764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=6.6e-21  Score=160.39  Aligned_cols=269  Identities=17%  Similarity=0.303  Sum_probs=188.1

Q ss_pred             CCCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           33 YNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        33 h~~~I~~i~~s~d----g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      |......++|+-|    ..++|.||.-|-|||.|+.++++...+.+|...|..+.+.|+..+++.+++  -|.+||+|++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S--kD~svRlwnI  165 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS--KDHSVRLWNI  165 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec--CCceEEEEec
Confidence            6777888888633    468999999999999999999999999999999999999998876655543  3899999999


Q ss_pred             cCCceEEEee---cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEE
Q 020021          109 HDNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR  185 (332)
Q Consensus       109 ~~~~~~~~~~---~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  185 (332)
                      ++..++..+.   ||.+.|.+++|+.++++++|+|.|.++++|++........+...    ..+.+++..         +
T Consensus       166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s----~~~~~~~t~---------~  232 (385)
T KOG1034|consen  166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS----ITYSPNKTT---------R  232 (385)
T ss_pred             cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh----cccCCCCcc---------C
Confidence            9999988774   79999999999999999999999999999999754332222111    011111000         0


Q ss_pred             EEECccCCCCCeeEE-EecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEc-cCCeE-------------eEEeeecCCC
Q 020021          186 MFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS-FRGTL-------------LSTYNVKPVS  250 (332)
Q Consensus       186 vwd~~~~~~~~~~~~-~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~-~~~~~-------------~~~~~~~~~~  250 (332)
                      =+-.   ...++..+ +-..|...|.++.|-  |.++++-+-++.|..|.. .-.+.             +.++.+. ..
T Consensus       233 pfpt---~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~-~c  306 (385)
T KOG1034|consen  233 PFPT---PKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP-MC  306 (385)
T ss_pred             cCCc---cccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC-cc
Confidence            0000   00011111 111233445555554  578888888999999987 21221             1122211 11


Q ss_pred             CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE--EEecC--CCCCCceEEeCCCeeEEEeccceEEEecccc
Q 020021          251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV--ASWMS--FDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  322 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~--~~~~~--~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~  322 (332)
                      ......-+|.|-+++||.|...|.+++||+.+.+..  .++..  -.+.|...+||.|+..|+...+|..+|.|+.
T Consensus       307 ~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  307 DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            122234567788999999999999999999886653  22222  2356788999999999999999999998874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=1.6e-19  Score=150.55  Aligned_cols=236  Identities=14%  Similarity=0.196  Sum_probs=178.0

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC--EEEEecCCCCCc
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDE  101 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~s~~g~d~  101 (332)
                      ....+....|+++|.+++|+.||..+++|+.|+.+++||+.++ +..++..|..+|..+.|.+...  -++++   +||.
T Consensus        62 ~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG---SWDK  137 (347)
T KOG0647|consen   62 QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTG---SWDK  137 (347)
T ss_pred             cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEec---cccc
Confidence            3344667889999999999999999999999999999999998 6778889999999999988776  33433   5899


Q ss_pred             eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE-----EEEecCceeEEEcCCCeEE
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQGRPAAAYDDQGLVF  176 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  176 (332)
                      ++|.||..+.+++.+++ -.++|.+++.-  ..+++-+..++.|.+++++.+....     .++...+..+++.+...++
T Consensus       138 TlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a  214 (347)
T KOG0647|consen  138 TLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA  214 (347)
T ss_pred             ceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE
Confidence            99999999888887765 45667777654  3567778889999999996543221     1222334455666666666


Q ss_pred             EEEeCCEEEEEECccCC-CCCeeEEEec------CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021          177 AVAFGGYIRMFDARKYE-KGPFDIFSVG------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~-~~~~~~~~~~------~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (332)
                      .++..|.+.+..+...+ ...+.+.+..      +..-.|++++|+|.-..|++.+.||+...||-.....+.+..   .
T Consensus       215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~---~  291 (347)
T KOG0647|consen  215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE---T  291 (347)
T ss_pred             eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC---c
Confidence            67778988887765432 2223322222      112357889999999999999999999999987766655544   5


Q ss_pred             CCCcceEEEECCCCCEEEEE
Q 020021          250 SRNSTLEASFSPEGMFVISG  269 (332)
Q Consensus       250 ~~~~~~~v~~spdg~~l~sg  269 (332)
                      +..++.+++|+.+|.++|-+
T Consensus       292 ~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  292 HPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CCCccceeEecCCCCEEEEE
Confidence            66789999999999998877

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=5.9e-20  Score=160.96  Aligned_cols=234  Identities=14%  Similarity=0.214  Sum_probs=175.8

Q ss_pred             CEEEEEeCC-CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021           47 SYLVTASDD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (332)
Q Consensus        47 ~~l~tgs~D-~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~  125 (332)
                      .|++++..- ..+.+|.+......+...--+.++.+++-+|.|.+++.+.-   .+.+.+|.+.+|..+..+.+|=..|+
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i---~g~lYlWelssG~LL~v~~aHYQ~IT  127 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTI---SGNLYLWELSSGILLNVLSAHYQSIT  127 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecc---cCcEEEEEeccccHHHHHHhhcccee
Confidence            566665544 47888988654444433334556888888999988876633   57899999999999999999999999


Q ss_pred             EEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCC
Q 020021          126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD  205 (332)
Q Consensus       126 ~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~  205 (332)
                      ++.|+.|+.+|+|||.||.|.+|++..-     +.        .+++.      .-..++.|               ..|
T Consensus       128 cL~fs~dgs~iiTgskDg~V~vW~l~~l-----v~--------a~~~~------~~~p~~~f---------------~~H  173 (476)
T KOG0646|consen  128 CLKFSDDGSHIITGSKDGAVLVWLLTDL-----VS--------ADNDH------SVKPLHIF---------------SDH  173 (476)
T ss_pred             EEEEeCCCcEEEecCCCccEEEEEEEee-----cc--------cccCC------Cccceeee---------------ccC
Confidence            9999999999999999999999986210     00        00000      00111222               234


Q ss_pred             CCCceeEEEcCC--CCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCC
Q 020021          206 ISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       206 ~~~v~~v~~s~d--g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~  283 (332)
                      .-+|+.+...+.  ...+++++.|.++++||+..|.++.++.    ....+.+++.+|-++.++.|++||.|.+.++.+.
T Consensus       174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL  249 (476)
T ss_pred             cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence            445555555554  4678999999999999999999887764    3456778999999999999999999999988542


Q ss_pred             c----------------eEEEecCCCC--CCceEEeCCCeeEEEeccce--EEEeccc
Q 020021          284 K----------------EVASWMSFDT--EPPVIKWTPGSLMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       284 ~----------------~~~~~~~~~~--~v~~l~~sp~~~~l~t~~~d--~~~w~~~  321 (332)
                      .                .+..+.+|..  +|+||+.+-||.+|++|+.|  +.+|++.
T Consensus       250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            2                2445678887  99999999999999999998  7777663

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1e-20  Score=169.19  Aligned_cols=259  Identities=25%  Similarity=0.352  Sum_probs=187.4

Q ss_pred             ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC--------CeeeEEeeecccceeEEEEccCCCEEEEecCC
Q 020021           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~   97 (332)
                      ...+++.|...|..+.|.|....|++++.|+++++|++..        -+.+.++.+|..+|.++++.+.+..++++   
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg---  362 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG---  362 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee---
Confidence            3348999999999999999999999999999999999931        34678899999999999999999999877   


Q ss_pred             CCCceeEEEEccCC----------ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEE---EecCc
Q 020021           98 GWDESLRLLSLHDN----------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGR  164 (332)
Q Consensus        98 g~d~~v~v~d~~~~----------~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~---~~~~~  164 (332)
                      |.|++|+.|++...          ....++.||++.|+.+++|+...+|+++|.|||++.|+...... .++   +..+.
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            45999999966422          12457889999999999999999999999999999999765544 122   11222


Q ss_pred             eeE-EEcCCC-eEEEEEe-CCEEEEEECccCCCCCeeEEEe---cC--CCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc
Q 020021          165 PAA-AYDDQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSV---GG--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (332)
Q Consensus       165 ~~~-~~~~~~-~~~~~~~-~~~i~vwd~~~~~~~~~~~~~~---~~--~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~  236 (332)
                      +.. .+.... ....+++ -+.-.+.++....  .+.++..   .+  ....++.+.-.|.+.+..++-.|+.|+++|..
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s--~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS--DLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhh--heeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence            211 110000 0111111 1111111211110  1111110   01  11356777888899999999999999999999


Q ss_pred             CCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC
Q 020021          237 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD  293 (332)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~  293 (332)
                      ++.+++...   .|...+.++++.|+|-||++++.|+.+++|.+....++.....|.
T Consensus       520 ~~~~l~s~~---a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  520 TGKILHSMV---AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             ccccchhee---eccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            999887765   345667789999999999999999999999998877776666654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=6.7e-21  Score=175.85  Aligned_cols=230  Identities=14%  Similarity=0.215  Sum_probs=179.0

Q ss_pred             EEEEC-CCCCEEEEEeCCCcEEEEEcCC---CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           39 SMDFH-KSSSYLVTASDDESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        39 ~i~~s-~dg~~l~tgs~D~tv~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      .|.|+ -+.++|||++..|.|-+||+..   .+.+..|..|...++.++|++....++.+.  +.|++|++||+...+..
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG--SQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG--SQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec--CCCceEEEEeeeccccc
Confidence            35554 3468999999999999999986   566678889999999999999887766653  56999999999999888


Q ss_pred             EEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCC
Q 020021          115 RYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE  193 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~  193 (332)
                      .++.+....|+.|.|+| .+..|+++...|.++.||++....-                                     
T Consensus       170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~-------------------------------------  212 (839)
T KOG0269|consen  170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC-------------------------------------  212 (839)
T ss_pred             ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH-------------------------------------
Confidence            99999999999999998 6779999999999999998754210                                     


Q ss_pred             CCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEEEcC-
Q 020021          194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGSG-  271 (332)
Q Consensus       194 ~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sgs~-  271 (332)
                           ...+.-|.+.+.++-++|++.+||+|+.|++|+|||+.+++.-.....  ....++.+|.|-|+.+ +||+++. 
T Consensus       213 -----~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nTiapv~rVkWRP~~~~hLAtcsmv  285 (839)
T KOG0269|consen  213 -----EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NTIAPVGRVKWRPARSYHLATCSMV  285 (839)
T ss_pred             -----HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--eecceeeeeeeccCccchhhhhhcc
Confidence                 011123556788999999999999999999999999986543322222  1235778899999865 5666644 


Q ss_pred             -CCcEEEEECCCCc-eEEEecCCCCCCceEEeCC-CeeEEEeccce
Q 020021          272 -DGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTP-GSLMFVTGSSE  314 (332)
Q Consensus       272 -Dg~i~vWd~~~~~-~~~~~~~~~~~v~~l~~sp-~~~~l~t~~~d  314 (332)
                       |-.|+|||++-.= +..++..|...++.++|.. |...|.+++.|
T Consensus       286 ~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD  331 (839)
T KOG0269|consen  286 VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKD  331 (839)
T ss_pred             ccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCc
Confidence             7799999995422 2356788998899999955 45677778777

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.4e-19  Score=161.24  Aligned_cols=240  Identities=14%  Similarity=0.187  Sum_probs=189.8

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee-EEeeec-ccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-KTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~  111 (332)
                      -.+|.+++|+.+.+.||.+=.|++|-||++..+=+. ..+.++ +..+..+||.+.+ .++++   |.++.|.-||+.+.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~---g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSS---GLSGSITEWDLHTL  100 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEee---cCCceEEEEecccC
Confidence            367999999999999999999999999999876544 345554 3468899999555 44443   34789999999999


Q ss_pred             ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECcc
Q 020021          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  191 (332)
Q Consensus       112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~  191 (332)
                      +.+..+..-.+.|++++.+|.++.++-|+.||.+.+.+...++......                          +    
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~--------------------------l----  150 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS--------------------------L----  150 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee--------------------------c----
Confidence            9999999889999999999999999999999977776665543321110                          0    


Q ss_pred             CCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec-----CCCCCcceEEEECCCCCEE
Q 020021          192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-----PVSRNSTLEASFSPEGMFV  266 (332)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~v~~spdg~~l  266 (332)
                                 .-+.+.+.+++|+|++..++.|+.||.|++||..++..++.....     ......++++.|=.| ..|
T Consensus       151 -----------~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI  218 (691)
T KOG2048|consen  151 -----------MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STI  218 (691)
T ss_pred             -----------ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcE
Confidence                       011245778999999999999999999999999998877633211     112335567777655 478


Q ss_pred             EEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceEEEec
Q 020021          267 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI  319 (332)
Q Consensus       267 ~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~  319 (332)
                      ++|..-|+|..||-..+..+.++..|.+.|.+|+-++++.++.+++.|-++..
T Consensus       219 ~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~  271 (691)
T KOG2048|consen  219 ASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQ  271 (691)
T ss_pred             EEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence            89999999999999999999999999999999999999999999988855443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=3.4e-17  Score=149.55  Aligned_cols=287  Identities=26%  Similarity=0.453  Sum_probs=212.0

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-eeEEeeeccc-ceeEEEE-ccCCCEEEEecCCCCCceeEE
Q 020021           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTINSKKY-GVDLVCF-TSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      .+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+..... .+..+.+ .+++..++... ...|+.+++
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~  138 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS-SSLDGTVKL  138 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEecc-CCCCccEEE
Confidence            577899999999999999999999999999999998876 6666666432 4555555 66666344433 234889999


Q ss_pred             EEccC-CceEEEeecccccEEEEEecCCCCeEEEeeC-CCcEEEEeCCCceEEEEEEec--CceeEEEcCCCe-EEEE-E
Q 020021          106 LSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGL-VFAV-A  179 (332)
Q Consensus       106 ~d~~~-~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~-~  179 (332)
                      |+... ......+.+|...|..+.|+|+++.+++++. |+.+++|+.........+..+  ......+.+.+. ++.+ +
T Consensus       139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            99988 7788889999999999999999999999986 999999999876666555442  233445555554 4444 5


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeE-eEEeeecCCCCCcceEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEAS  258 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~v~  258 (332)
                      .++.|++||....   ........++.... ...|+|++.++++++.++.+++||...... +..+   ..|...+..+.
T Consensus       219 ~d~~i~~wd~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~  291 (466)
T COG2319         219 SDGTIRLWDLSTG---KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVA  291 (466)
T ss_pred             CCCcEEEEECCCC---cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEE
Confidence            6899999987622   11111234444443 338999998899999999999999986654 3333   24467788889


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEEEec--CCCCCCceEEeCCCeeEEEec-cce--EEEeccccc
Q 020021          259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSLMFVTG-SSE--LSFWIPDLS  323 (332)
Q Consensus       259 ~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~t~-~~d--~~~w~~~~~  323 (332)
                      |+|++..+++++.|+.+++||..+........  .|...+..+.|.+++..++.+ ..|  +.+|.....
T Consensus       292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  361 (466)
T COG2319         292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG  361 (466)
T ss_pred             ECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence            99999999999999999999998877666655  777778999994342344444 444  555655443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.84  E-value=3.3e-20  Score=163.90  Aligned_cols=236  Identities=12%  Similarity=0.220  Sum_probs=183.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---eeEEee--ecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---CLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      .|...|-++.+|...+++.||+.- -|+|||+....   .+..+.  .....+..+.+.++++.++.+.   .-.++.+|
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG---eastlsiW  492 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG---EASTLSIW  492 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc---ccceeeee
Confidence            588889999999989999999875 48999997432   222222  1234577888999999999874   35689999


Q ss_pred             EccCCceEEE--eecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEE
Q 020021          107 SLHDNKYLRY--FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI  184 (332)
Q Consensus       107 d~~~~~~~~~--~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  184 (332)
                      |+......-.  +....-...+++.+||.+...++..||.|.|||+..+..+..+                         
T Consensus       493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf-------------------------  547 (705)
T KOG0639|consen  493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF-------------------------  547 (705)
T ss_pred             eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc-------------------------
Confidence            9987654322  2222235677899999999999999999999999766443322                         


Q ss_pred             EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC
Q 020021          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (332)
Q Consensus       185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~  264 (332)
                                        .||+..+.++.+|+||+.|=+|+.|.+|+.||++.+..+..+..    ..-|.++.++|++.
T Consensus       548 ------------------qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF----~SQIfSLg~cP~~d  605 (705)
T KOG0639|consen  548 ------------------QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF----SSQIFSLGYCPTGD  605 (705)
T ss_pred             ------------------cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh----hhhheecccCCCcc
Confidence                              35666788999999999999999999999999999887655432    34577888999999


Q ss_pred             EEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          265 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       265 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      +||.|-+.+.+.|-..... .-..+.-|..-|.+|.|++-|+.+++.+.|  +..|.
T Consensus       606 WlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawr  661 (705)
T KOG0639|consen  606 WLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  661 (705)
T ss_pred             ceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhcc
Confidence            9999999998888876443 334455688889999999999999999988  67774

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.84  E-value=3.3e-21  Score=179.05  Aligned_cols=275  Identities=17%  Similarity=0.268  Sum_probs=199.4

Q ss_pred             cHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecC
Q 020021           17 SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK   96 (332)
Q Consensus        17 ~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~   96 (332)
                      -.-|.++++.++.|.||-.+|.|+.|+..|.+++||++|.-++||..+++.|+....+|...++.++.+.....+++++ 
T Consensus       173 Pgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS-  251 (1113)
T KOG0644|consen  173 PGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS-  251 (1113)
T ss_pred             cHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc-
Confidence            3458889999999999999999999999999999999999999999999999999999999999999888777776655 


Q ss_pred             CCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec-------CceeEEE
Q 020021           97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-------GRPAAAY  169 (332)
Q Consensus        97 ~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-------~~~~~~~  169 (332)
                        .|..|++|-+..+.++..++||++.|++++|+|-.    +.+.||++++||.+-.-.. ....+       ......+
T Consensus       252 --~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~-y~prp~~~~~~~~~~s~~~  324 (1113)
T KOG0644|consen  252 --NDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI-YVPRPLKFTEKDLVDSILF  324 (1113)
T ss_pred             --cCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc-cCCCCCCcccccceeeeec
Confidence              38899999999999999999999999999999844    8899999999998711100 00000       0011122


Q ss_pred             cCCC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeec
Q 020021          170 DDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (332)
Q Consensus       170 ~~~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (332)
                      ...+ ...++..+++-+.|.+...          +.+...+..+.++.|- .+.+++-.+-.+.+|++.+|.+++...  
T Consensus       325 ~~~~~~f~Tgs~d~ea~n~e~~~l----------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~--  392 (1113)
T KOG0644|consen  325 ENNGDRFLTGSRDGEARNHEFEQL----------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM--  392 (1113)
T ss_pred             cccccccccccCCcccccchhhHh----------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc--
Confidence            2222 2333334555555543221          1222223333444333 355566677788999999998877665  


Q ss_pred             CCCCCcceEEEECC-CCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEeccc
Q 020021          248 PVSRNSTLEASFSP-EGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       248 ~~~~~~~~~v~~sp-dg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                       +|...+..+.++| +-+...+++.||...|||+..+-.++.. .+|. .+..-+||+||+.++....
T Consensus       393 -ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~  458 (1113)
T KOG0644|consen  393 -GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDD  458 (1113)
T ss_pred             -ccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCC
Confidence             4556666778888 5567788999999999999888776543 4444 3556678888876655433

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=1.6e-19  Score=159.48  Aligned_cols=257  Identities=14%  Similarity=0.238  Sum_probs=187.4

Q ss_pred             EEEEEECCCCCE-EEEEeCCCcEEEEEcCC--Ceee--EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021           37 ISSMDFHKSSSY-LVTASDDESIRLYDVTA--ATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (332)
Q Consensus        37 I~~i~~s~dg~~-l~tgs~D~tv~iwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~  111 (332)
                      ++++.|+....+ +++.+.|+.+++|.-..  ++..  ....+.  ...++++.....++++   +|..++|++||+...
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~s---gG~~~~Vkiwdl~~k  111 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEIS---GGQSGCVKIWDLRAK  111 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeec---cCcCceeeehhhHHH
Confidence            889999876643 46677899999997542  2221  122222  2334444444444443   466889999999987


Q ss_pred             ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-ce--eEEEcCCCe--EEEEEeCCEEEE
Q 020021          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RP--AAAYDDQGL--VFAVAFGGYIRM  186 (332)
Q Consensus       112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~--~~~~~~~~~--~~~~~~~~~i~v  186 (332)
                      -+++.+++|++.|+++.++-...++|+++.-|.|.+....++.....+..+. ..  -..|++..+  +..++.+|.|.+
T Consensus       112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl  191 (673)
T KOG4378|consen  112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL  191 (673)
T ss_pred             HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence            7888999999999999999988999999999999999988876665665432 11  234555433  333445799999


Q ss_pred             EECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (332)
Q Consensus       187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~  265 (332)
                      ||+....  ++..+ ...|.++...|+|||... ++++-+.|..|.+||.........+.+    ..+...++|+++|.+
T Consensus       192 wDv~g~s--p~~~~-~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~  264 (673)
T KOG4378|consen  192 WDVQGMS--PIFHA-SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTY  264 (673)
T ss_pred             EeccCCC--cccch-hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceE
Confidence            9987543  22222 234667888999999775 567779999999999987666555543    235568999999999


Q ss_pred             EEEEcCCCcEEEEECCCCc-eEEEecCCCCCCceEEeCCCe
Q 020021          266 VISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGS  305 (332)
Q Consensus       266 l~sgs~Dg~i~vWd~~~~~-~~~~~~~~~~~v~~l~~sp~~  305 (332)
                      |+.|+..|.|.-||++..+ ++..+..|...|++|+|-|.-
T Consensus       265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            9999999999999997644 577788999999999996653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.84  E-value=1.2e-19  Score=164.35  Aligned_cols=135  Identities=17%  Similarity=0.264  Sum_probs=109.2

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeeeE------EeeecccceeEEEEcc
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLK------TINSKKYGVDLVCFTS   86 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~d-g~~l~tgs~D~tv~iwd~~~~~~~~------~~~~~~~~v~~~~~~~   86 (332)
                      |+|.+..-+ .+....|.+|..-|+.+.|+|= ..+|||+|.|..|+||.+..+....      .+...+..+.++.|+|
T Consensus        60 lPl~~~Gr~-~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHp  138 (1012)
T KOG1445|consen   60 LPLTAKGRR-TRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHP  138 (1012)
T ss_pred             EeccccCcc-ccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeeccc
Confidence            444444432 3466778999999999999973 4689999999999999987432111      1233345678899999


Q ss_pred             CCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCC
Q 020021           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA  152 (332)
Q Consensus        87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~  152 (332)
                      ....++++..   .+++++||+.+++.+..+.+|.+.|.+++|+.||+.|++++.|+.|+|+|.+.
T Consensus       139 TaDgil~s~a---~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  139 TADGILASGA---HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             CcCceEEecc---CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            9888877654   56899999999999999999999999999999999999999999999999874

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=1.3e-18  Score=146.36  Aligned_cols=278  Identities=17%  Similarity=0.302  Sum_probs=187.0

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCC----e--------eeEEeeec-ccceeEEEEcc-----CCCEEEEecCCC
Q 020021           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAA----T--------CLKTINSK-KYGVDLVCFTS-----HPTTVIYSSKNG   98 (332)
Q Consensus        37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~----~--------~~~~~~~~-~~~v~~~~~~~-----~~~~~~~~s~~g   98 (332)
                      ..+..|||||.-|++-+.|..+++|++...    .        ...++... ...|...||.+     ++..-+++++ .
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s-s  130 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS-S  130 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec-c
Confidence            347889999999999999999999987421    0        00111111 12245566653     2222222222 3


Q ss_pred             CCceeEEEEccCCceEEEee--cccccEE---EEEecCCCCeEEEeeCCCcEEEEeC-CCceEEEEEEe--c-------C
Q 020021           99 WDESLRLLSLHDNKYLRYFK--GHHDRVV---SLSLCSSKDCFISGSLDRTVLLWDQ-RAEKCQGLLRV--Q-------G  163 (332)
Q Consensus        99 ~d~~v~v~d~~~~~~~~~~~--~h~~~V~---~v~~~~~~~~l~s~s~Dg~i~iWd~-~~~~~~~~~~~--~-------~  163 (332)
                      .|+-|.+||.-+|+....++  .|.++++   +++|+|||.+|..| ..+.|+++|+ +.++-......  .       .
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            48899999999998777665  4666665   68999999998765 6689999998 44432211110  0       1


Q ss_pred             ceeEEEcC-CCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc-CCCeEEEEEccCCe-
Q 020021          164 RPAAAYDD-QGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGT-  239 (332)
Q Consensus       164 ~~~~~~~~-~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d~~~~~-  239 (332)
                      ..+..++| +...++++ +...+-++.-...    -..+.+.+|...|+-+.|.+||..+.+|. .+..|-.||++... 
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~  285 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD  285 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence            12345555 33344444 5556655543322    22445668889999999999999888876 46799999997643 


Q ss_pred             EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC-CceEEEecCCCCCCceEEeCCCeeEEEeccceEEEe
Q 020021          240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFW  318 (332)
Q Consensus       240 ~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w  318 (332)
                      .+..+..+....+--+-....|++++||+|+.||.|++||+.+ +..+..+..++..++.++++|-.-+++|+++...+-
T Consensus       286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~  365 (406)
T KOG2919|consen  286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFK  365 (406)
T ss_pred             hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeec
Confidence            3333332222122222335579999999999999999999988 676777888888999999999998999998876665


Q ss_pred             cc
Q 020021          319 IP  320 (332)
Q Consensus       319 ~~  320 (332)
                      .+
T Consensus       366 ~~  367 (406)
T KOG2919|consen  366 YP  367 (406)
T ss_pred             CC
Confidence            55

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=8.6e-19  Score=146.58  Aligned_cols=229  Identities=18%  Similarity=0.251  Sum_probs=168.2

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~  111 (332)
                      .|..++.+.+|.++ ..+++|+.|+.||.+|+++++.. .+..|..++.+++..+....++++   |||++|++||..+.
T Consensus        52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsg---sWD~~ik~wD~R~~  126 (323)
T KOG1036|consen   52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISG---SWDKTIKFWDPRNK  126 (323)
T ss_pred             ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEc---ccCccEEEEecccc
Confidence            48999999999874 58889999999999999987654 466788899999999777777765   68999999998764


Q ss_pred             ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE-----EEEecCceeEEEcCCCeEEEEEeCCEEEE
Q 020021          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQGRPAAAYDDQGLVFAVAFGGYIRM  186 (332)
Q Consensus       112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  186 (332)
                      ....++. ..+.|.+++..  ++.|+-|+.|..+.+||++......     .++.+.+....+...+.+++++.+|.|.+
T Consensus       127 ~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav  203 (323)
T KOG1036|consen  127 VVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV  203 (323)
T ss_pred             ccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence            4444443 33478888765  6789999999999999998654322     22333344455555667888888998766


Q ss_pred             EECccC---CCCCeeEEEec---CC---CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021          187 FDARKY---EKGPFDIFSVG---GD---ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (332)
Q Consensus       187 wd~~~~---~~~~~~~~~~~---~~---~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v  257 (332)
                      =.+...   +..++...++.   ..   .-+|++++|+|-...+++|+.||.|.+||+...+.+..+..   -...+..+
T Consensus       204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~---~~~SI~sl  280 (323)
T KOG1036|consen  204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK---YETSISSL  280 (323)
T ss_pred             EccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC---CCCceEEE
Confidence            433221   11122221111   11   13689999999999999999999999999988877766542   23567789


Q ss_pred             EECCCCCEEEEEcC
Q 020021          258 SFSPEGMFVISGSG  271 (332)
Q Consensus       258 ~~spdg~~l~sgs~  271 (332)
                      +|+.||..||.|+.
T Consensus       281 sfs~dG~~LAia~s  294 (323)
T KOG1036|consen  281 SFSMDGSLLAIASS  294 (323)
T ss_pred             EeccCCCeEEEEec
Confidence            99999999999974

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1e-18  Score=164.36  Aligned_cols=239  Identities=14%  Similarity=0.222  Sum_probs=181.6

Q ss_pred             ecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC-ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCC
Q 020021           74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA  152 (332)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~-~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~  152 (332)
                      +|..+-+.+|+.+++.+++++.+   |+.||+|+..+. +...++..|...|.+++..  +.+|++++.+++|..+.+.+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgs---dg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGS---DGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecC---CCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence            56667788999999998877754   889999987665 4444454477888887654  45999999999999998866


Q ss_pred             ceEEE---EEEecCceeEEEcCCCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC
Q 020021          153 EKCQG---LLRVQGRPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG  228 (332)
Q Consensus       153 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg  228 (332)
                      +....   .+.++.. ..+++.++..++++ .|-.|++.++.....    ...+.+|.++|..+.|+|.+.++|+.+.||
T Consensus        86 ~~~~~iL~Rftlp~r-~~~v~g~g~~iaagsdD~~vK~~~~~D~s~----~~~lrgh~apVl~l~~~p~~~fLAvss~dG  160 (933)
T KOG1274|consen   86 GEEDTILARFTLPIR-DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ----EKVLRGHDAPVLQLSYDPKGNFLAVSSCDG  160 (933)
T ss_pred             CCccceeeeeeccce-EEEEecCCcEEEeecCceeEEEEeccccch----heeecccCCceeeeeEcCCCCEEEEEecCc
Confidence            55432   3333333 34555566555555 566899988765332    345567889999999999999999999999


Q ss_pred             eEEEEEccCCeEeEEeeec-----CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec--CCCCCCceEEe
Q 020021          229 HIHVLDSFRGTLLSTYNVK-----PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKW  301 (332)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~~~~~v~~l~~  301 (332)
                      .|++||+..+.+...+...     ......+..++|+|+|..+|....|++|.+++..+......+.  .+.+.+.++.|
T Consensus       161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w  240 (933)
T KOG1274|consen  161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW  240 (933)
T ss_pred             eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence            9999999988776655321     1113455678999999999999999999999999888766653  34445899999


Q ss_pred             CCCeeEEEeccce--EEEecccc
Q 020021          302 TPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       302 sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                      +|.|+++++++.+  +.+|+++.
T Consensus       241 sPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  241 SPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cCCCcEEeeeccCCcEEEEeccc
Confidence            9999999999877  88899884

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.83  E-value=6.2e-18  Score=154.71  Aligned_cols=289  Identities=16%  Similarity=0.248  Sum_probs=196.1

Q ss_pred             ceeEeccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEEcCC--CeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           26 VGMSFRDYNGRISSMDFHKSSS---YLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg~---~l~tgs~D~tv~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      ...+++||.++|+|+.+-|+..   ++++|+.|+.|++|.+..  ..++.++.+|  ...++|+......+...   ..|
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~--~~~~~cv~a~~~~~~~~---~ad  120 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGH--CKECVCVVARSSVMTCK---AAD  120 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCc--ceeEEEEEeeeeEEEee---ccC
Confidence            3456899999999999998887   899999999999999873  2345555553  34444544433322221   125


Q ss_pred             ceeEEEEccCCc--------------------------------------------------eEEEeecccccEEEEEec
Q 020021          101 ESLRLLSLHDNK--------------------------------------------------YLRYFKGHHDRVVSLSLC  130 (332)
Q Consensus       101 ~~v~v~d~~~~~--------------------------------------------------~~~~~~~h~~~V~~v~~~  130 (332)
                      +++++||.+..+                                                  ....+.||.+.|.+++|.
T Consensus       121 ~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~  200 (764)
T KOG1063|consen  121 GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA  200 (764)
T ss_pred             ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence            666666663332                                                  124578999999999998


Q ss_pred             CCCC---eEEEeeCCCcEEEEeCCCce---------------------EEEEEEe--------cCc----eeEEEcCCC-
Q 020021          131 SSKD---CFISGSLDRTVLLWDQRAEK---------------------CQGLLRV--------QGR----PAAAYDDQG-  173 (332)
Q Consensus       131 ~~~~---~l~s~s~Dg~i~iWd~~~~~---------------------~~~~~~~--------~~~----~~~~~~~~~-  173 (332)
                      ..+.   +|+|+|+|..||+|.+.-+.                     +...++.        .+.    ....+++.+ 
T Consensus       201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~  280 (764)
T KOG1063|consen  201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL  280 (764)
T ss_pred             ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence            6544   89999999999999764221                     1111110        011    134455666 


Q ss_pred             eEEEEEeCCEEEEEECccCCCCCeeE---EEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC
Q 020021          174 LVFAVAFGGYIRMFDARKYEKGPFDI---FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (332)
Q Consensus       174 ~~~~~~~~~~i~vwd~~~~~~~~~~~---~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (332)
                      .+++++.|.++.+|.-.....--...   -.++|.......+-|+|++..+++-+.-|-.++|.......-.......+|
T Consensus       281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH  360 (764)
T KOG1063|consen  281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH  360 (764)
T ss_pred             hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence            57777789999999754321101111   123344445778899999999999999999999983322211111223467


Q ss_pred             CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce-----EEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE-----VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~-----~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      ...+..++|+|.|.||+|+|.|-+-|+|-.- |+.     +....-|....+|++|-+...+|++|..+  ++.+.+
T Consensus       361 ~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a  436 (764)
T KOG1063|consen  361 VDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA  436 (764)
T ss_pred             cccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccCCceeeecccceeeeeecC
Confidence            8889999999999999999999999999653 222     33446688889999999877788888776  555543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=8.9e-19  Score=150.80  Aligned_cols=246  Identities=14%  Similarity=0.197  Sum_probs=173.6

Q ss_pred             EeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCC-------eeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      .+.||+++|..++|+|-+ ..|||||.|.+|.||.+-.+       +.+..+.+|...|-.+.|+|....++.++  |.|
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa--g~D  153 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA--GSD  153 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc--cCC
Confidence            368999999999999855 67899999999999998532       34567889999999999999998877664  569


Q ss_pred             ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec--C-ceeEEEcCCCeEEE
Q 020021          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--G-RPAAAYDDQGLVFA  177 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~  177 (332)
                      ++|.+||+.+++.+-++. |.+.|.+++|+.+|.+|+|.+.|+.||+||.++++.+.....+  . ..-+++-.++.+++
T Consensus       154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence            999999999999888888 9999999999999999999999999999999999877655222  1 23355556677888


Q ss_pred             EEe----CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE-EEEEcCCCeEEEEEccCCeE-eEEeeecCCCC
Q 020021          178 VAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSR  251 (332)
Q Consensus       178 ~~~----~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~-l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~  251 (332)
                      .++    +..+.+||-.+.+.+ .....+.. .+.|.-==+.+|-.+ +++|-.|+.|+-|.+..-.. ++-+. .....
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP-~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln-~f~S~  309 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEP-IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLN-TFSSK  309 (472)
T ss_pred             eccccccccceeccCcccccCc-ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEec-ccccC
Confidence            776    468999998776543 33332211 122222234566554 46777899999999765432 22221 11222


Q ss_pred             CcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       252 ~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      .+-..+.|.|.-..  ..+.....|.|.+.+
T Consensus       310 epQRG~g~mPKRGl--~Vs~cEI~rfyKl~~  338 (472)
T KOG0303|consen  310 EPQRGMGFMPKRGL--DVSKCEIARFYKLHE  338 (472)
T ss_pred             Cccccccccccccc--cchHHHHHHHHHhhc
Confidence            33445677775322  223333344444433

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.83  E-value=2.3e-19  Score=153.57  Aligned_cols=206  Identities=17%  Similarity=0.312  Sum_probs=150.8

Q ss_pred             cccceeEEEEccCCCEEEEecCCCCCceeEEEEccC----------------CceEEEeecccccEEEEEecCC-CCeEE
Q 020021           75 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----------------NKYLRYFKGHHDRVVSLSLCSS-KDCFI  137 (332)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~----------------~~~~~~~~~h~~~V~~v~~~~~-~~~l~  137 (332)
                      |...+.++...+.++..++++- .-.+.|.|||+..                .+++.++.+|...-.+++|||- ...|+
T Consensus       150 h~g~~NRvr~~~~~~~~~~asw-se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASW-SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             cccccceeeecccCCcceeeee-cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            3445566666666665555543 2257899999743                2357889999999999999993 33688


Q ss_pred             EeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC
Q 020021          138 SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  217 (332)
Q Consensus       138 s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d  217 (332)
                      ||..-+.|++|...++...                                +.        .....+|...|..+++||.
T Consensus       229 sGDc~~~I~lw~~~~g~W~--------------------------------vd--------~~Pf~gH~~SVEDLqWSpt  268 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWK--------------------------------VD--------QRPFTGHTKSVEDLQWSPT  268 (440)
T ss_pred             cCccccceEeeeeccCcee--------------------------------ec--------CccccccccchhhhccCCc
Confidence            9988899999987665321                                00        0011245667888999996


Q ss_pred             C-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC---CceEEEecCCC
Q 020021          218 G-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS---GKEVASWMSFD  293 (332)
Q Consensus       218 g-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~---~~~~~~~~~~~  293 (332)
                      . .++++++.||.|+|||++.+.....+..+ .|..-|+-+.|+-.-.+||+|+.||+++|||++.   ++.+.++..|.
T Consensus       269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~k-Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk  347 (440)
T KOG0302|consen  269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTK-AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK  347 (440)
T ss_pred             cCceEEeeecCceEEEEEecCCCccceeEee-ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence            5 68899999999999999988433222222 3556777889999888999999999999999965   56688999999


Q ss_pred             CCCceEEeCCCe-eEEEeccce--EEEecccc
Q 020021          294 TEPPVIKWTPGS-LMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       294 ~~v~~l~~sp~~-~~l~t~~~d--~~~w~~~~  322 (332)
                      ++|++|.|+|.. ..++.++.|  +.+|+..+
T Consensus       348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  348 APITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             CCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            999999999954 344444444  99998654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.2e-18  Score=152.58  Aligned_cols=245  Identities=14%  Similarity=0.264  Sum_probs=188.3

Q ss_pred             CCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeE--Eeeec-ccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           33 YNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLK--TINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        33 h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~--~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      -..+|.+..|.|+|. .+++++.-..+..||+.+.+..+  ...++ ...+.....++++.++++...   .+.|.+.-.
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---~G~I~lLha  332 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---NGHIHLLHA  332 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc---CceEEeehh
Confidence            357899999999998 89999999999999998876543  23333 234667788899998887654   567999988


Q ss_pred             cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc---eeEEEcCCCeEEEEEeC-CEE
Q 020021          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVFAVAFG-GYI  184 (332)
Q Consensus       109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~i  184 (332)
                      ++++.+.+++ -.+.|..+.|+.|++.|+..+.+|.|.+||++.++|+..+.-.+.   ...+.+.++.+++++++ |.|
T Consensus       333 kT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiV  411 (514)
T KOG2055|consen  333 KTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIV  411 (514)
T ss_pred             hhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceE
Confidence            8988887776 567899999999999999999999999999999999888865442   23455677778888875 899


Q ss_pred             EEEECccCC--CCCeeEEEecCCCCCceeEEEcCCCCEEEEEc--CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021          185 RMFDARKYE--KGPFDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (332)
Q Consensus       185 ~vwd~~~~~--~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s  260 (332)
                      .|||..+..  ..+..+..+..-...|+.+.|+||+++++.++  .+..+++.-+.+......+-.....-..+++++||
T Consensus       412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS  491 (514)
T KOG2055|consen  412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS  491 (514)
T ss_pred             EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence            999954321  11222222223345789999999999988776  45678888777766555554333344567899999


Q ss_pred             CCCCEEEEEcCCCcEEEEECC
Q 020021          261 PEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       261 pdg~~l~sgs~Dg~i~vWd~~  281 (332)
                      |.+.|||-|.++|.+.+|.+.
T Consensus       492 P~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  492 PNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCCceEEeecCCCceeeEeec
Confidence            999999999999999999874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.2e-17  Score=152.61  Aligned_cols=254  Identities=17%  Similarity=0.199  Sum_probs=194.8

Q ss_pred             ccceeEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021           24 MEVGMSFRDYN-GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (332)
Q Consensus        24 ~~~~~~l~~h~-~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~  102 (332)
                      --+.+.+.|+. ..|.+|+|+ ++..|+|.+.+|+|.-||+.+++++..+......+..++.+|..+.+..++.   |+.
T Consensus        58 w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd---dGv  133 (691)
T KOG2048|consen   58 WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCD---DGV  133 (691)
T ss_pred             ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecC---Cce
Confidence            34556677765 669999999 5678999999999999999999999999888888999999999999998876   566


Q ss_pred             eEEEEccCCceE--EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEe
Q 020021          103 LRLLSLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF  180 (332)
Q Consensus       103 v~v~d~~~~~~~--~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (332)
                      +...+...++..  ..|...+++|.++.|+|++..+++|+.||.|++||...+.......+..            ...+.
T Consensus       134 l~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~------------d~l~k  201 (691)
T KOG2048|consen  134 LYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQL------------DRLSK  201 (691)
T ss_pred             EEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecc------------ccccc
Confidence            777777776543  3455677999999999999999999999999999998776544222110            00011


Q ss_pred             CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s  260 (332)
                      ...+-+|.                       +.|-.|+ .+++|...|+|+.||...+++++.+.   .|...+.+++.+
T Consensus       202 ~~~~iVWS-----------------------v~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~  254 (691)
T KOG2048|consen  202 REPTIVWS-----------------------VLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVA  254 (691)
T ss_pred             CCceEEEE-----------------------EEEeecC-cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEc
Confidence            12233332                       3344454 47899999999999999999988776   456778899999


Q ss_pred             CCCCEEEEEcCCCcEEEEECCCCce--EE--EecCCCCCCceEEeCCCeeEEEeccceEEEecccc
Q 020021          261 PEGMFVISGSGDGSVYAWSVRSGKE--VA--SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  322 (332)
Q Consensus       261 pdg~~l~sgs~Dg~i~vWd~~~~~~--~~--~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~  322 (332)
                      +++.++.+++.|+.|.-+...+.+.  +.  ....|...+.+++..++  .+++|+.|..+-....
T Consensus       255 ~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  255 DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS  318 (691)
T ss_pred             CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence            9999999999999999888766533  22  23467777889998777  8889998866655443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=3e-16  Score=143.31  Aligned_cols=291  Identities=25%  Similarity=0.438  Sum_probs=209.9

Q ss_pred             ceeEeccCC-CcEEEEEE-CCCCC-EEEEEeC-CCcEEEEEcCC-CeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           26 VGMSFRDYN-GRISSMDF-HKSSS-YLVTASD-DESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        26 ~~~~l~~h~-~~I~~i~~-s~dg~-~l~tgs~-D~tv~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      ....+.++. ..+..+.+ ++++. +++..+. |+++++||... ......+..|...+..++|++++..++.+..  .|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~  177 (466)
T COG2319         100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LD  177 (466)
T ss_pred             eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CC
Confidence            445555544 37888888 88887 5555455 99999999998 7888888899989999999999986666532  48


Q ss_pred             ceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEE-EEEecCce-eEEEcCCC-eEE
Q 020021          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG-LLRVQGRP-AAAYDDQG-LVF  176 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~  176 (332)
                      +.+++|++..+..+..+.+|...|.+++|+|++. .+++++.|++|++||.+.+.... .+..+... ...+.+.+ .++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (466)
T COG2319         178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLA  257 (466)
T ss_pred             CceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEE
Confidence            8999999999888999999999999999999988 66666999999999988666555 33322221 22566665 555


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  256 (332)
                      +++.++.+++|+++.... .....  .++...+..+.|+|++..+++++.|+.+.+||........... ...+...+..
T Consensus       258 ~~~~d~~~~~~~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  333 (466)
T COG2319         258 SGSSDGTIRLWDLRSSSS-LLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSS  333 (466)
T ss_pred             EecCCCcEEEeeecCCCc-EEEEE--ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEE
Confidence            566789999999986543 12222  3456788899999988888888888899999988776655443 1133445777


Q ss_pred             EEECCCCCEEEEE-cCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEe-ccce--EEEecccccc
Q 020021          257 ASFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT-GSSE--LSFWIPDLSK  324 (332)
Q Consensus       257 v~~spdg~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t-~~~d--~~~w~~~~~~  324 (332)
                      +.|.+++..++.+ ..|+.+++|++............. .+..+.+++ ...... +..+  +.+|+.....
T Consensus       334 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  403 (466)
T COG2319         334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS  403 (466)
T ss_pred             EEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCe
Confidence            8884443555555 788999999998876333332222 278888988 544443 3443  7888765433

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=1.5e-18  Score=151.40  Aligned_cols=235  Identities=16%  Similarity=0.206  Sum_probs=162.5

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCee---eEE------------------eeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           46 SSYLVTASDDESIRLYDVTAATC---LKT------------------INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~---~~~------------------~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      |+|+|.|..|..|-|||+.-...   ..+                  ..+|...|..+++...-+.++++  ++.|.+|+
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS--gsaD~TV~  269 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLAS--GSADKTVK  269 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEe--cCCCceEE
Confidence            68999999999999999852111   011                  12455566667777666666554  35699999


Q ss_pred             EEEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEE-EEEEec-CceeEEEcC-CCeEEEEE-
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQ-GLLRVQ-GRPAAAYDD-QGLVFAVA-  179 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~-~~~~~~-~~~~~~~~~-~~~~~~~~-  179 (332)
                      +||+.++++..++..|.+.|.++.|+| .+..|++||+|+++++.|.+...+. ...+.. ......+.+ ....+.++ 
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence            999999999999999999999999998 5679999999999999999853322 122222 223344444 33444444 


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~  258 (332)
                      .||+++-+|+|+...+   .+.+..|..+|..+++++.- .++++++.|+.+++|+............ ...-+...+.+
T Consensus       350 ddG~v~~~D~R~~~~~---vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~-~~~~~rl~c~~  425 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKP---VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH-SFKLGRLHCFA  425 (463)
T ss_pred             CCceEEeeecCCCCCc---eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc-cccccceeecc
Confidence            5799999999986533   44555577789999998865 4677889999999999754332111110 00011122345


Q ss_pred             ECCCC-CEEEEEcCCCcEEEEECCCCceE
Q 020021          259 FSPEG-MFVISGSGDGSVYAWSVRSGKEV  286 (332)
Q Consensus       259 ~spdg-~~l~sgs~Dg~i~vWd~~~~~~~  286 (332)
                      +.|+- -++|.|+.-+.++|||+.+...+
T Consensus       426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cCCCcceEEEecCccceEEEeecccChhH
Confidence            55654 46677788888999999886654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.6e-18  Score=145.33  Aligned_cols=240  Identities=14%  Similarity=0.193  Sum_probs=170.8

Q ss_pred             eeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEE
Q 020021           79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL  158 (332)
Q Consensus        79 v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~  158 (332)
                      ..++.|++-|..++.++.   |+.+.+||+.+...-+.+.+|..+|.+++|+++|+.|+|+|.|..|++||+..+.+...
T Consensus        26 a~~~~Fs~~G~~lAvGc~---nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCA---NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeecc---CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            467889999999999886   67899999999888888999999999999999999999999999999999999998887


Q ss_pred             EEecC-ceeEEEcCC--CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCC-CceeEEEcCCCCEEEEEcCCCeEEEEE
Q 020021          159 LRVQG-RPAAAYDDQ--GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLD  234 (332)
Q Consensus       159 ~~~~~-~~~~~~~~~--~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~v~~s~dg~~l~~~~~dg~i~i~d  234 (332)
                      ++.+. ...+.++|.  ...+++-.+..-.+.++.... .........++.. ......|.+.|+++.+|+..|.+.++|
T Consensus       103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~  181 (405)
T KOG1273|consen  103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD  181 (405)
T ss_pred             EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence            77654 234455542  234444444333444433211 0000000011111 122235889999999999999999999


Q ss_pred             ccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc------eE---EEec--CCCCCCceEEeCC
Q 020021          235 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK------EV---ASWM--SFDTEPPVIKWTP  303 (332)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~------~~---~~~~--~~~~~v~~l~~sp  303 (332)
                      ..+-+++..++...  ...+-.+.|+..|++|+.-+.|+.||.++++.-.      .+   +.+.  .....=++++||.
T Consensus       182 a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~  259 (405)
T KOG1273|consen  182 AETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG  259 (405)
T ss_pred             cchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence            99999888887543  2456678899999999999999999999986311      11   1111  0111225688999


Q ss_pred             CeeEEEeccce---EEEecccccc
Q 020021          304 GSLMFVTGSSE---LSFWIPDLSK  324 (332)
Q Consensus       304 ~~~~l~t~~~d---~~~w~~~~~~  324 (332)
                      +|.+++.++.-   +.+|.-....
T Consensus       260 dgeYv~a~s~~aHaLYIWE~~~Gs  283 (405)
T KOG1273|consen  260 DGEYVCAGSARAHALYIWEKSIGS  283 (405)
T ss_pred             CccEEEeccccceeEEEEecCCcc
Confidence            99999888753   7777654433

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=3.3e-18  Score=147.78  Aligned_cols=277  Identities=18%  Similarity=0.244  Sum_probs=183.4

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC--------C--------CeeeEEeeecccceeEEEEcc
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--------A--------ATCLKTINSKKYGVDLVCFTS   86 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~   86 (332)
                      +.+.+.+|.+|+.+|+++.|+|+|++||||++++.+.+|-..        +        -.....+.+|...+..++|++
T Consensus        54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~  133 (434)
T KOG1009|consen   54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP  133 (434)
T ss_pred             eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence            567778899999999999999999999999999999999765        2        122345667777888899999


Q ss_pred             CCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee
Q 020021           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  166 (332)
Q Consensus        87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~  166 (332)
                      ++..+++++.   |+++++||+..|+....+.+|...|..++|.|-+.++++-|.|...+..++...+..........+.
T Consensus       134 d~~~l~s~s~---dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~  210 (434)
T KOG1009|consen  134 DSNFLVSGSV---DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA  210 (434)
T ss_pred             CCceeeeeec---cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence            9999998864   9999999999999999999999999999999999999999999976766654433222111100000


Q ss_pred             EEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC----CC-----eEEEEEccC
Q 020021          167 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM----EG-----HIHVLDSFR  237 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~----dg-----~i~i~d~~~  237 (332)
                      ....+       ......|++.-++..             .=...++|+|||.++++...    .+     +.++++.  
T Consensus       211 ~~~~~-------~e~~s~rLfhDeTlk-------------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr--  268 (434)
T KOG1009|consen  211 KAFNE-------REGKSTRLFHDETLK-------------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR--  268 (434)
T ss_pred             cccCC-------CCcceeeeeecCchh-------------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc--
Confidence            00000       001123443322111             11345688999998876431    12     2344432  


Q ss_pred             CeEeEE-eeecCCCCCcceEEEECC------------------CCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCc
Q 020021          238 GTLLST-YNVKPVSRNSTLEASFSP------------------EGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPP  297 (332)
Q Consensus       238 ~~~~~~-~~~~~~~~~~~~~v~~sp------------------dg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~  297 (332)
                       +.+.. ...-+....+...+.|+|                  .+..+|.++ -..++|+|.++.+++... .-|=..++
T Consensus       269 -k~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iT  346 (434)
T KOG1009|consen  269 -KDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAIT  346 (434)
T ss_pred             -ccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeec
Confidence             21111 000112223333444443                  334455554 457999999886665432 23556899


Q ss_pred             eEEeCCCeeEEEeccce--EEEecccccccc
Q 020021          298 VIKWTPGSLMFVTGSSE--LSFWIPDLSKLG  326 (332)
Q Consensus       298 ~l~~sp~~~~l~t~~~d--~~~w~~~~~~~~  326 (332)
                      .++|++||..|+..|-|  +.+-..+...||
T Consensus       347 Diaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  347 DIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             ceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            99999999888777766  666555555555

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.81  E-value=5.4e-18  Score=148.47  Aligned_cols=256  Identities=13%  Similarity=0.168  Sum_probs=175.3

Q ss_pred             EcCCCeeeEEeeecccceeEEEEccCCC-EEEE-ecCCCCCceeEEEEccCCc----eEEEeecccccEEEEEecC-CCC
Q 020021           62 DVTAATCLKTINSKKYGVDLVCFTSHPT-TVIY-SSKNGWDESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCS-SKD  134 (332)
Q Consensus        62 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~-~s~~g~d~~v~v~d~~~~~----~~~~~~~h~~~V~~v~~~~-~~~  134 (332)
                      |+.+-.....+.-+...|++++|+|..+ .+++ +..   -++|-+||+.+.+    -+..+..|..+|.++.|+| +..
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK---~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s  248 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDK---GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS  248 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccC---CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh
Confidence            3334444455666677899999999887 4444 433   4689999994222    3567788999999999999 556


Q ss_pred             eEEEeeCCCcEEEEeCCCceEEEEEEecCcee----EEE-cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCc
Q 020021          135 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA----AAY-DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA  209 (332)
Q Consensus       135 ~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v  209 (332)
                      ++++.|+||+|++=|++.......+.......    ..+ ..++.++.+..-|...+||.|..... +  .....|...|
T Consensus       249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~-~--~~~~lh~kKI  325 (498)
T KOG4328|consen  249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE-Y--ENLRLHKKKI  325 (498)
T ss_pred             heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc-c--hhhhhhhccc
Confidence            99999999999999998765443333321111    111 13445666665568999999875432 2  2222344578


Q ss_pred             eeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEE-eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC----CC
Q 020021          210 NVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR----SG  283 (332)
Q Consensus       210 ~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~----~~  283 (332)
                      ..++++|-. .++++++.|++.+|||++.-..... +-....|...|.++.|||++-.|+|.+.|.+|+|||..    .-
T Consensus       326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~  405 (498)
T KOG4328|consen  326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD  405 (498)
T ss_pred             ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence            999999976 5788999999999999976433221 11122467888899999998889999999999999983    22


Q ss_pred             ceEEEecCCCC----CC--ceEEeCCCeeEEEeccce--EEEecccccc
Q 020021          284 KEVASWMSFDT----EP--PVIKWTPGSLMFVTGSSE--LSFWIPDLSK  324 (332)
Q Consensus       284 ~~~~~~~~~~~----~v--~~l~~sp~~~~l~t~~~d--~~~w~~~~~~  324 (332)
                      ....++ .|+.    ..  ..-.|.|+..+++.|-.-  +-+++...++
T Consensus       406 ~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  406 EPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             Ccccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            222332 2332    22  335699999999888653  7777776655

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=6.6e-17  Score=135.36  Aligned_cols=243  Identities=14%  Similarity=0.249  Sum_probs=166.0

Q ss_pred             ecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc----eEEEeecccccEEEEEecC--CCCeEEEeeCCCcEEE
Q 020021           74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLL  147 (332)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~----~~~~~~~h~~~V~~v~~~~--~~~~l~s~s~Dg~i~i  147 (332)
                      +|..=|+++.|.+.|+.++++++   |+++++||.+...    +....+.|.+.|..+.|.+  -|..+|++|.|++++|
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSs---Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSS---DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             CCcceeeeeeecccCceeeeccC---CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            45566899999999999999986   8999999965433    4556789999999999874  4889999999999999


Q ss_pred             EeCC--CceE-----EEEEEec----CceeEEEcC--CCe-EEEEEeCCEEEEEECccCCCC-------Cee--EEEecC
Q 020021          148 WDQR--AEKC-----QGLLRVQ----GRPAAAYDD--QGL-VFAVAFGGYIRMFDARKYEKG-------PFD--IFSVGG  204 (332)
Q Consensus       148 Wd~~--~~~~-----~~~~~~~----~~~~~~~~~--~~~-~~~~~~~~~i~vwd~~~~~~~-------~~~--~~~~~~  204 (332)
                      |.-.  ..++     .....+.    ....+.|.|  -|. +.+++.||.+|+|+....-.-       .+.  ....+.
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            9742  1111     1111111    122334444  344 445557999999986432110       000  001112


Q ss_pred             CCCCceeEEEcCCC---CEEEEEcCC-----CeEEEEEccCCe-EeEEeeecCCCCCcceEEEECCCC----CEEEEEcC
Q 020021          205 DISDANVVKFSNDG---RLMLLTTME-----GHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEG----MFVISGSG  271 (332)
Q Consensus       205 ~~~~v~~v~~s~dg---~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~spdg----~~l~sgs~  271 (332)
                      +.....++.++|..   .+|++|+.+     +.++||....+. ......--+.+..+|..++|.|+-    ..||+|+.
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence            22355667777643   578888777     478888765432 222222223677899999999963    68999999


Q ss_pred             CCcEEEEECCCC--------------------ceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          272 DGSVYAWSVRSG--------------------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       272 Dg~i~vWd~~~~--------------------~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      || |+||.+...                    +.+..+-.|+++|+.+.|+-.|..|++.+.|  +++|--
T Consensus       248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            99 999999731                    1244567899999999999999999999888  777743

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=8.1e-19  Score=154.71  Aligned_cols=299  Identities=19%  Similarity=0.292  Sum_probs=213.7

Q ss_pred             HHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCC--EEEEec
Q 020021           19 EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPT--TVIYSS   95 (332)
Q Consensus        19 ~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~s   95 (332)
                      .+++.+.+.+.|..|.|.|+.|.|...|..|+|||+|..|.+||-..+.....+. +|...|.-..|.|...  .++.++
T Consensus       127 ~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s  206 (559)
T KOG1334|consen  127 LFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS  206 (559)
T ss_pred             HHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc
Confidence            4456678888999999999999999999999999999999999988777665553 4555555555666443  345443


Q ss_pred             CCCCCceeEEEEccCCce---EEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEec--Cc-----
Q 020021           96 KNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GR-----  164 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~---~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~-----  164 (332)
                         .|+++|+-.+-...+   .+.+..|.++|..++.-|+ ...|.|++.|+.+.-.|++.+.+...+...  ..     
T Consensus       207 ---~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~  283 (559)
T KOG1334|consen  207 ---RDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG  283 (559)
T ss_pred             ---ccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence               488999887544333   3456789999999998884 568999999999999999887665444221  11     


Q ss_pred             -eeEEEcC-CCeEEE-EEeCCEEEEEECccCCCC----CeeEE----EecCCCCCceeEEEcCCCCEEEEEcCCCeEEEE
Q 020021          165 -PAAAYDD-QGLVFA-VAFGGYIRMFDARKYEKG----PFDIF----SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL  233 (332)
Q Consensus       165 -~~~~~~~-~~~~~~-~~~~~~i~vwd~~~~~~~----~~~~~----~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~  233 (332)
                       .....+| +...++ ++.+...|+||.|.....    .++.+    .+......|++++||.++.-++++-.|-.|++|
T Consensus       284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF  363 (559)
T KOG1334|consen  284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF  363 (559)
T ss_pred             eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence             1222333 333444 446789999998865432    11111    112334578999999999999999999999999


Q ss_pred             EccCCeE----------eEEeeecCCCCC--cceEE-EECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEE
Q 020021          234 DSFRGTL----------LSTYNVKPVSRN--STLEA-SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK  300 (332)
Q Consensus       234 d~~~~~~----------~~~~~~~~~~~~--~~~~v-~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~  300 (332)
                      ....+.-          ........+|.+  .|-.+ -|.|...|+++||.-|.|.||+-.+++.+..+.+...-|+||.
T Consensus       364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE  443 (559)
T KOG1334|consen  364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE  443 (559)
T ss_pred             ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC
Confidence            6432211          001110113333  23334 4789999999999999999999999998887776666889999


Q ss_pred             eCCCeeEEEeccc--eEEEecc
Q 020021          301 WTPGSLMFVTGSS--ELSFWIP  320 (332)
Q Consensus       301 ~sp~~~~l~t~~~--d~~~w~~  320 (332)
                      -+|--=.|++.+-  |++||.|
T Consensus       444 pHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  444 PHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             CCCCCchhhccCCccceeeecC
Confidence            9998888888775  5999998

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=3.7e-18  Score=139.99  Aligned_cols=281  Identities=12%  Similarity=0.188  Sum_probs=179.5

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      ..|++|.+.|+++.|..++ +|.+|..-|.|++|++.+...+-.+. .+...++.+--.|++ .+.+   .|.|..+.+|
T Consensus         8 fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~t---qgRd~~L~lw   82 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDT---QGRDPLLILW   82 (323)
T ss_pred             eEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhh---cCCCceEEEE
Confidence            4678999999999998866 58899999999999999877766666 344445555444442 2222   3668999999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC-cEEEE-----------eCCCceEEEEEEec--Cc--eeEEEc
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLW-----------DQRAEKCQGLLRVQ--GR--PAAAYD  170 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg-~i~iW-----------d~~~~~~~~~~~~~--~~--~~~~~~  170 (332)
                      ++.-+.++..   |.-.++++.||+..  +...+... ..-.+           |............+  .+  ...+.+
T Consensus        83 ~ia~s~~i~i---~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~  157 (323)
T KOG0322|consen   83 TIAYSAFISI---HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD  157 (323)
T ss_pred             EccCcceEEE---eeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence            9988765543   55667777777532  11111111 01111           11100000000000  00  011111


Q ss_pred             ----CCC-eEEEEEe-CCEEEEEECccCCC------CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC-
Q 020021          171 ----DQG-LVFAVAF-GGYIRMFDARKYEK------GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-  237 (332)
Q Consensus       171 ----~~~-~~~~~~~-~~~i~vwd~~~~~~------~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~-  237 (332)
                          ... .++.+++ +|.+-+||+.....      ..........+..++.++.|.+.-..=++++.+.++..|.+.. 
T Consensus       158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s  237 (323)
T KOG0322|consen  158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS  237 (323)
T ss_pred             ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence                122 3444444 69999999875311      0011122334556788888876555556777788888887643 


Q ss_pred             -CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--
Q 020021          238 -GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--  314 (332)
Q Consensus       238 -~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--  314 (332)
                       +.+....+.. ..+..+..+..-||++.+||++.|+.||||+.++.+.+..++.|.+.|++++|+||...++.++.|  
T Consensus       238 ~gslq~~~e~~-lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r  316 (323)
T KOG0322|consen  238 TGSLQIRKEIT-LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR  316 (323)
T ss_pred             cCcccccceEE-ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence             3332222111 123345567888999999999999999999999999999999999999999999999999999999  


Q ss_pred             EEEec
Q 020021          315 LSFWI  319 (332)
Q Consensus       315 ~~~w~  319 (332)
                      +.+|.
T Consensus       317 ISLWk  321 (323)
T KOG0322|consen  317 ISLWK  321 (323)
T ss_pred             EEeee
Confidence            66664

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=1.2e-18  Score=146.89  Aligned_cols=225  Identities=20%  Similarity=0.323  Sum_probs=161.3

Q ss_pred             cccceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeEEe---eecccceeEEEEccCCCEEEEecCCC
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTI---NSKKYGVDLVCFTSHPTTVIYSSKNG   98 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~s~~g   98 (332)
                      +.++.+.++||.++|+.|.|.|+. ++++++|.|.+||+|++.+..|+..+   .+|.+.|.++.|++++.+++++   |
T Consensus       124 ~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~Sc---G  200 (385)
T KOG1034|consen  124 SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASC---G  200 (385)
T ss_pred             hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeecc---C
Confidence            356678899999999999999986 68899999999999999999999876   4688899999999999988765   6


Q ss_pred             CCceeEEEEccCCce---------------------------E-EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeC
Q 020021           99 WDESLRLLSLHDNKY---------------------------L-RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ  150 (332)
Q Consensus        99 ~d~~v~v~d~~~~~~---------------------------~-~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~  150 (332)
                      +|.++++|++...+.                           . .+-.-|.++|-++.|-  |++++|-|.++.|..|.+
T Consensus       201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKP  278 (385)
T ss_pred             CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEec
Confidence            799999999973221                           0 0223477777777775  488999999999999975


Q ss_pred             -CCceEEEEEEecCceeEEEcCCCeEEEEEeC-CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC
Q 020021          151 -RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG  228 (332)
Q Consensus       151 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg  228 (332)
                       +-+........+        .....+..-++ ....+|=                     .-.+|.|-++.+|.+...|
T Consensus       279 gkl~e~~~~vkp~--------es~~Ti~~~~~~~~c~iWf---------------------irf~~d~~~~~la~gnq~g  329 (385)
T KOG1034|consen  279 GKLEESIHNVKPP--------ESATTILGEFDYPMCDIWF---------------------IRFAFDPWQKMLALGNQSG  329 (385)
T ss_pred             chhhhhhhccCCC--------ccceeeeeEeccCccceEE---------------------EEEeecHHHHHHhhccCCC
Confidence             211111111000        00011111111 1111221                     1235677789999999999


Q ss_pred             eEEEEEccCCeEe-EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021          229 HIHVLDSFRGTLL-STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       229 ~i~i~d~~~~~~~-~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                      .|++||++..+.. .+-..++.....+...+||.||.+|+...+|++|.-||.-
T Consensus       330 ~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  330 KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9999999876552 2222233445677788999999999999999999999864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.3e-18  Score=153.87  Aligned_cols=233  Identities=18%  Similarity=0.282  Sum_probs=166.5

Q ss_pred             cHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCC-EEEEe
Q 020021           17 SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPT-TVIYS   94 (332)
Q Consensus        17 ~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~   94 (332)
                      ..++++.+.+.+.|.||+|.|+|+.|+.+|.+|++||+|..+.|||....+.++.+. +|...|.++.|.|... .++.+
T Consensus        33 ~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~s  112 (758)
T KOG1310|consen   33 NSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLS  112 (758)
T ss_pred             ccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEe
Confidence            456788899999999999999999999999999999999999999999888888885 5777899999998655 33333


Q ss_pred             cCCCCCceeEEEEccCC----------ceEEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceE-EEEEEec
Q 020021           95 SKNGWDESLRLLSLHDN----------KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKC-QGLLRVQ  162 (332)
Q Consensus        95 s~~g~d~~v~v~d~~~~----------~~~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~-~~~~~~~  162 (332)
                      + +| |..|+|+|+...          +....+..|+++|..++..|++ ..|.+++.||+|+.+|++.... ......+
T Consensus       113 g-Ag-Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~  190 (758)
T KOG1310|consen  113 G-AG-DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP  190 (758)
T ss_pred             c-cC-cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence            2 23 889999999752          2356678899999999999987 7999999999999999986431 1000000


Q ss_pred             CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCC---
Q 020021          163 GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRG---  238 (332)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~---  238 (332)
                      .                     .   +.          .+.++.....++++||.. .++++|+.+--.++||.+.-   
T Consensus       191 ~---------------------~---l~----------ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks  236 (758)
T KOG1310|consen  191 S---------------------I---LV----------NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKS  236 (758)
T ss_pred             H---------------------H---HH----------HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccC
Confidence            0                     0   00          000111234567888866 57788889989999994211   


Q ss_pred             -----e----------EeEEeeecCCCC-----------CcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 020021          239 -----T----------LLSTYNVKPVSR-----------NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA  287 (332)
Q Consensus       239 -----~----------~~~~~~~~~~~~-----------~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~  287 (332)
                           .          .+.-|  .+.|.           .+++-+.|+|+|..|+..-....|+++|+..++.+.
T Consensus       237 ~~s~~~~~~~pp~~~~cv~yf--~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  237 FRSDGTMNTCPPKDCRCVRYF--SPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             CCCCccccCCCCcccchhhee--cCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence                 0          01001  01111           123447899999888766555689999998877654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=2.3e-15  Score=135.67  Aligned_cols=267  Identities=10%  Similarity=0.122  Sum_probs=167.5

Q ss_pred             EEEEeCCCcEEEEEcCC-Ce--eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC-Cce--EEEeecccc
Q 020021           49 LVTASDDESIRLYDVTA-AT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKY--LRYFKGHHD  122 (332)
Q Consensus        49 l~tgs~D~tv~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~-~~~--~~~~~~h~~  122 (332)
                      .++...|++|++||+.+ ++  .++++.. ......++++|+++.+++++.  .++.|.+|++.. ++.  +.... ...
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~--~~~~i~~~~~~~~g~l~~~~~~~-~~~   80 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVR--PEFRVLSYRIADDGALTFAAESP-LPG   80 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEEC--CCCcEEEEEECCCCceEEeeeec-CCC
Confidence            45567899999999964 33  4455543 234567899999988877653  267899999863 332  12111 223


Q ss_pred             cEEEEEecCCCCeEEEeeC-CCcEEEEeCCCc-e---EEEEEEe-cCceeEEEcCCCeEEEE-E-eCCEEEEEECccCCC
Q 020021          123 RVVSLSLCSSKDCFISGSL-DRTVLLWDQRAE-K---CQGLLRV-QGRPAAAYDDQGLVFAV-A-FGGYIRMFDARKYEK  194 (332)
Q Consensus       123 ~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~-~---~~~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~i~vwd~~~~~~  194 (332)
                      ....+.|+|+++++++++. ++.|.+||+.+. .   ....+.. .......+++++..+.+ . .++.|.+||+.....
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence            4678999999998887764 889999998642 1   1122111 11234456777655543 3 358999999865211


Q ss_pred             C-C--eeEEEecCCCCCceeEEEcCCCCEEEEEcC-CCeEEEEEccC--Ce--EeEEeeecCC---CCCcceEEEECCCC
Q 020021          195 G-P--FDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFR--GT--LLSTYNVKPV---SRNSTLEASFSPEG  263 (332)
Q Consensus       195 ~-~--~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~~~---~~~~~~~v~~spdg  263 (332)
                      - .  ....... .......++|+|||+++.+... ++.|.+||+..  ++  .+..+...+.   .......+.|+|||
T Consensus       161 l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        161 LVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            0 0  0001111 1123567899999999877665 89999999873  33  2333322111   11123358899999


Q ss_pred             CEEEEEc-CCCcEEEEECCCCce----EEEecCCCCCCceEEeCCCeeEEEeccc---eEEEeccc
Q 020021          264 MFVISGS-GDGSVYAWSVRSGKE----VASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSFWIPD  321 (332)
Q Consensus       264 ~~l~sgs-~Dg~i~vWd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~t~~~---d~~~w~~~  321 (332)
                      ++++++. .+++|.+|++.+...    +..... ...+..+.|+|||++|.++..   .+.+|..+
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            9999985 478999999965332    222222 234678999999988776543   38888764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.77  E-value=5.7e-17  Score=148.00  Aligned_cols=268  Identities=16%  Similarity=0.240  Sum_probs=195.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEE
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR  115 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~  115 (332)
                      .|..++|-|||..|+-+..| .+.|||++.|..++++++|...|.+++++.+|+.++++++   |..|.+|+-+-...++
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a---DK~VI~W~~klEG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA---DKSVIIWTSKLEGILK   89 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC---ceeEEEecccccceee
Confidence            79999999999988766655 5899999999999999999999999999999999987754   8899999864422221


Q ss_pred             EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEE-eCCEEEEEECccCCC
Q 020021          116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA-FGGYIRMFDARKYEK  194 (332)
Q Consensus       116 ~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~  194 (332)
                        -.|.+.|.++.|+|-...|+|++-. ..-+|.................++.+..+|.+++.+ .+|+|.+=+-...  
T Consensus        90 --YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE--  164 (1081)
T KOG1538|consen   90 --YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE--  164 (1081)
T ss_pred             --eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC--
Confidence              2599999999999999999999873 567897654332222112223456777889988877 5799887643221  


Q ss_pred             CCeeEEEecCCCCCceeEEEcCCCC-----EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE
Q 020021          195 GPFDIFSVGGDISDANVVKFSNDGR-----LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (332)
Q Consensus       195 ~~~~~~~~~~~~~~v~~v~~s~dg~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg  269 (332)
                      +...+-..+|..+++-+++++|...     .+++..=..++..+.+ +|+.+..-+   ...-...++.+.|+|.|++.|
T Consensus       165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r---~L~FdP~CisYf~NGEy~LiG  240 (1081)
T KOG1538|consen  165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDR---ALNFDPCCISYFTNGEYILLG  240 (1081)
T ss_pred             cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccc---cCCCCchhheeccCCcEEEEc
Confidence            2223334456777899999998643     3344443444444433 244332111   011122357888999999999


Q ss_pred             cCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceEEE
Q 020021          270 SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF  317 (332)
Q Consensus       270 s~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~  317 (332)
                      +.|+-+.++- +.|-.+.+.......|+.++.+|+++.++.|+.|.++
T Consensus       241 Gsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi  287 (1081)
T KOG1538|consen  241 GSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI  287 (1081)
T ss_pred             cCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence            9999999995 5677888888888899999999999999999988544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=2e-16  Score=147.32  Aligned_cols=221  Identities=14%  Similarity=0.169  Sum_probs=156.1

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCC---cEEEEEcCCCee--eEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDE---SIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~---tv~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      .+.+..|...+.+.+|||||++|+.++.+.   .|.+||+.+++.  +..+.++   ....+|+|++..++++...  ++
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~--~g  270 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSK--DG  270 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEec--CC
Confidence            456778888999999999999999887653   699999988754  3333332   3357999999998886531  44


Q ss_pred             eeE--EEEccCCceEEEeecccccEEEEEecCCCCeEEEee-CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021          102 SLR--LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  178 (332)
Q Consensus       102 ~v~--v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      .+.  ++|+.+++ ...+..|...+....|+|||+.++.++ .++..++|++......                      
T Consensus       271 ~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~----------------------  327 (429)
T PRK01742        271 VLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG----------------------  327 (429)
T ss_pred             cEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----------------------
Confidence            444  45666655 445666777788999999999776554 6788888875422100                      


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~  258 (332)
                           .+.             .  . ...  ....+||||+.++..+.++ +.+||+.+++......   ..  ......
T Consensus       328 -----~~~-------------l--~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~~--~~~~~~  378 (429)
T PRK01742        328 -----ASL-------------V--G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---TF--LDESPS  378 (429)
T ss_pred             -----eEE-------------e--c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---CC--CCCCce
Confidence                 000             0  0 000  2356899999998887765 5569998876542211   11  123568


Q ss_pred             ECCCCCEEEEEcCCCcEEEEEC--CCCceEEEecCCCCCCceEEeCCC
Q 020021          259 FSPEGMFVISGSGDGSVYAWSV--RSGKEVASWMSFDTEPPVIKWTPG  304 (332)
Q Consensus       259 ~spdg~~l~sgs~Dg~i~vWd~--~~~~~~~~~~~~~~~v~~l~~sp~  304 (332)
                      |+|||++|+.++.++.+++|++  .+++.+..+..|++.+...+|||-
T Consensus       379 ~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        379 ISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            9999999999999999998886  357778888888888899999984

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.76  E-value=1.9e-17  Score=146.36  Aligned_cols=241  Identities=14%  Similarity=0.189  Sum_probs=171.3

Q ss_pred             cccceeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCC
Q 020021            9 EDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP   88 (332)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   88 (332)
                      .+++.++--+-.++...++..+.|..  -+|++......|+++||..+.|+|||+....+.+.++.|...|+.+.+....
T Consensus        56 dk~~~~~~K~g~~~~Vp~~~k~~gd~--~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D  133 (673)
T KOG4378|consen   56 DKVMRIKEKDGKTPEVPRVRKLTGDN--AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD  133 (673)
T ss_pred             ceeEEEecccCCCCccceeeccccch--HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc
Confidence            34444443333344455555555542  2344444444899999999999999999878888899999999999999888


Q ss_pred             CEEEEecCCCCCceeEEEEccCCceEEEeecc-cccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEE-ecCce
Q 020021           89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH-HDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLR-VQGRP  165 (332)
Q Consensus        89 ~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h-~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~-~~~~~  165 (332)
                      .++++.+.+   +.|.+..++++.....|..- ...|+-+.|++..+ +|.++|.+|+|.+||.....+..... .+..+
T Consensus       134 eyiAsvs~g---Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP  210 (673)
T KOG4378|consen  134 EYIASVSDG---GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP  210 (673)
T ss_pred             ceeEEeccC---CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC
Confidence            899888764   46889999888766666544 34566889999776 67889999999999987766554332 12222


Q ss_pred             --eEEEcC--CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe-E
Q 020021          166 --AAAYDD--QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-L  240 (332)
Q Consensus       166 --~~~~~~--~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~-~  240 (332)
                        ..++++  ...+++++.|..|.+||++.........+.     .+...++|+++|.+|++|+..|.|..||++.-+ +
T Consensus       211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             cCcceecCCccceEEEecccceEEEeecccccccceeeec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence              345554  346777889999999999864332222221     357889999999999999999999999998643 3


Q ss_pred             eEEeeecCCCCCcceEEEECCC
Q 020021          241 LSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       241 ~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      +....   .|...|.+++|=|.
T Consensus       286 v~v~s---ah~~sVt~vafq~s  304 (673)
T KOG4378|consen  286 VAVRS---AHDASVTRVAFQPS  304 (673)
T ss_pred             ceEee---ecccceeEEEeeec
Confidence            33333   45667888988554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.75  E-value=8.3e-17  Score=146.96  Aligned_cols=234  Identities=18%  Similarity=0.319  Sum_probs=170.0

Q ss_pred             ceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE
Q 020021           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  157 (332)
Q Consensus        78 ~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~  157 (332)
                      .|..+||.|+|..++.++    ++.+.+||.+.|..+.++++|++-|.+++|+.||++|+||+.|+.|.+|..+-   .+
T Consensus        14 ci~d~afkPDGsqL~lAA----g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA----GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EG   86 (1081)
T ss_pred             chheeEECCCCceEEEec----CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cc
Confidence            577899999999998876    56899999999999999999999999999999999999999999999997543   33


Q ss_pred             EEEec---CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEE
Q 020021          158 LLRVQ---GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (332)
Q Consensus       158 ~~~~~---~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d  234 (332)
                      .++..   ...+..+.|-...++...=+..-+|......-.+      ......+.++++..||++++.|-.+|+|.+-+
T Consensus        87 ~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K------~kss~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen   87 ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK------HKSSSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh------hhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence            44332   2334555564444444333334556543211000      00123578899999999999999999999986


Q ss_pred             ccCCeEeEEeeecCCCCCcceEEEECCCC-----CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEE
Q 020021          235 SFRGTLLSTYNVKPVSRNSTLEASFSPEG-----MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV  309 (332)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~v~~spdg-----~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  309 (332)
                       .+|+....+....+.+.+++.++|+|..     ..++......++..+.+ +|+.+..-...+=.+-|+++-|+|.++.
T Consensus       161 -k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~L  238 (1081)
T KOG1538|consen  161 -KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYIL  238 (1081)
T ss_pred             -CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEE
Confidence             4466555566666677899999999964     46677777777777776 4666664444444567899999999888


Q ss_pred             eccce--EEEecccccccc
Q 020021          310 TGSSE--LSFWIPDLSKLG  326 (332)
Q Consensus       310 t~~~d--~~~w~~~~~~~~  326 (332)
                      .|+.|  ++++.-+.-+||
T Consensus       239 iGGsdk~L~~fTR~GvrLG  257 (1081)
T KOG1538|consen  239 LGGSDKQLSLFTRDGVRLG  257 (1081)
T ss_pred             EccCCCceEEEeecCeEEe
Confidence            88776  666665544443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=1.1e-14  Score=131.31  Aligned_cols=253  Identities=9%  Similarity=0.097  Sum_probs=159.2

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEE-eCCCcEEEEEcC-CCee--eEEeeecccceeEEEEccCCCEEEEecCC
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTA-SDDESIRLYDVT-AATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tg-s~D~tv~iwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~   97 (332)
                      +.+++.+++. +.+....++++|++++|+.+ ..++.|.+|++. ++..  +..... ......++++++++.++.+.. 
T Consensus        23 g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~~~p~~i~~~~~g~~l~v~~~-   99 (330)
T PRK11028         23 GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-PGSPTHISTDHQGRFLFSASY-   99 (330)
T ss_pred             CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-CCCceEEEECCCCCEEEEEEc-
Confidence            3445556665 34567788999999988655 458899999996 3432  222221 223457899999998887753 


Q ss_pred             CCCceeEEEEccC-Cc---eEEEeecccccEEEEEecCCCCeEE-EeeCCCcEEEEeCCCceEEE-----EEEe---cCc
Q 020021           98 GWDESLRLLSLHD-NK---YLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQG-----LLRV---QGR  164 (332)
Q Consensus        98 g~d~~v~v~d~~~-~~---~~~~~~~h~~~V~~v~~~~~~~~l~-s~s~Dg~i~iWd~~~~~~~~-----~~~~---~~~  164 (332)
                       .++.+.+|+++. +.   .+..+.+ .....+++++|++++++ +...++.|.+||+++.....     ....   ...
T Consensus       100 -~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p  177 (330)
T PRK11028        100 -NANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP  177 (330)
T ss_pred             -CCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC
Confidence             278999999964 22   2333332 23456788999998875 55567999999997632221     1111   111


Q ss_pred             eeEEEcCCCeEEEEEe--CCEEEEEECccCCCCCeeEE-EecCC------CCCceeEEEcCCCCEEEEEc-CCCeEEEEE
Q 020021          165 PAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIF-SVGGD------ISDANVVKFSNDGRLMLLTT-MEGHIHVLD  234 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~--~~~i~vwd~~~~~~~~~~~~-~~~~~------~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d  234 (332)
                      ....+++++.++.+..  ++.|.+|++.... +.+... .+...      ......+.++|||+++.++. .++.|.+|+
T Consensus       178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~  256 (330)
T PRK11028        178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPH-GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFS  256 (330)
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEEEeCCC-CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence            2457778877665554  6899999986321 122111 11110      01123588999999888874 478999999


Q ss_pred             ccCCe-EeEEeeecCCCCCcceEEEECCCCCEEEEEcC-CCcEEEEECC
Q 020021          235 SFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DGSVYAWSVR  281 (332)
Q Consensus       235 ~~~~~-~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~-Dg~i~vWd~~  281 (332)
                      +.... .+......+. ......++|+|||++|+++.. +++|.+|++.
T Consensus       257 i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        257 VSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            85432 1111111011 123446899999999998865 8999999874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1.4e-17  Score=160.18  Aligned_cols=273  Identities=16%  Similarity=0.250  Sum_probs=181.9

Q ss_pred             EEEECCCCC-EEEEE----------eCCCcEEEEEcCC--Ce----eeEEeeecccceeEEEEccCCCE---EEEecCCC
Q 020021           39 SMDFHKSSS-YLVTA----------SDDESIRLYDVTA--AT----CLKTINSKKYGVDLVCFTSHPTT---VIYSSKNG   98 (332)
Q Consensus        39 ~i~~s~dg~-~l~tg----------s~D~tv~iwd~~~--~~----~~~~~~~~~~~v~~~~~~~~~~~---~~~~s~~g   98 (332)
                      .++|+|++. ++++|          +.+.++-||.+..  .+    ....+. .......++|.+.+..   ++.++  .
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG--~   87 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGG--L   87 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecc--c
Confidence            457888885 44433          4456777776642  22    111111 1234567888876665   45443  4


Q ss_pred             CCceeEEEEccC---Cc---eEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEE---e-cCceeE
Q 020021           99 WDESLRLLSLHD---NK---YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLR---V-QGRPAA  167 (332)
Q Consensus        99 ~d~~v~v~d~~~---~~---~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~-~~~~~~  167 (332)
                      .|+.|-+||...   +.   .+..+..|++.|.+++|++. ++.||||+.||.|.|||++....-...-   . ....+.
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL  167 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence            589999999654   22   35667889999999999995 5599999999999999987532211110   0 011122


Q ss_pred             EEcCC-CeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCC---eEEEEEccCCe-E
Q 020021          168 AYDDQ-GLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEG---HIHVLDSFRGT-L  240 (332)
Q Consensus       168 ~~~~~-~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg---~i~i~d~~~~~-~  240 (332)
                      .+..+ ..+++.+ .+|++.+||+|..+  +.-.+...+....++.++++|++ +.+++++.|.   .|.+||++... .
T Consensus       168 sWNrkvqhILAS~s~sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP  245 (1049)
T KOG0307|consen  168 SWNRKVSHILASGSPSGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP  245 (1049)
T ss_pred             ccchhhhHHhhccCCCCCceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence            22221 2445544 46899999999752  22222322222457889999998 4455555543   69999986532 3


Q ss_pred             eEEeeecCCCCCcceEEEECCCC-CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCee-EEEeccce--EE
Q 020021          241 LSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSSE--LS  316 (332)
Q Consensus       241 ~~~~~~~~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~t~~~d--~~  316 (332)
                      ++++.   +|...+.++.|++.+ ++|+|++.|+.|.+|+..+++.+..+..-...+..+.|.|..= .++.++-|  +.
T Consensus       246 ~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  246 LKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS  322 (1049)
T ss_pred             hhhhc---ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence            44443   577888999999866 9999999999999999999999999988778899999999653 55556555  55


Q ss_pred             Eec
Q 020021          317 FWI  319 (332)
Q Consensus       317 ~w~  319 (332)
                      +..
T Consensus       323 I~s  325 (1049)
T KOG0307|consen  323 IYS  325 (1049)
T ss_pred             eee
Confidence            543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=5.1e-17  Score=156.33  Aligned_cols=242  Identities=18%  Similarity=0.229  Sum_probs=184.5

Q ss_pred             CcEEEEEECCCCCE----EEEEeCCCcEEEEEcCC---C---eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           35 GRISSMDFHKSSSY----LVTASDDESIRLYDVTA---A---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        35 ~~I~~i~~s~dg~~----l~tgs~D~tv~iwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      ...+.+.|.+.|..    ||.|..||+|.+||...   +   +.+.+...|...|..+.|++....++.+.  +-|+.|.
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG--a~~geI~  142 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG--ADDGEIL  142 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc--CCCCcEE
Confidence            34678889877755    99999999999999864   2   23456677888999999999887544332  2388999


Q ss_pred             EEEccCCceEEEee--cccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEecC----ceeEEEcCCC--eE
Q 020021          105 LLSLHDNKYLRYFK--GHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQG--LV  175 (332)
Q Consensus       105 v~d~~~~~~~~~~~--~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~----~~~~~~~~~~--~~  175 (332)
                      +||++.-+...++.  .-.+.|.+++|+.. ...|+|++.+|.+.|||++.++.+..+....    .....++++.  .+
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence            99998865555542  24678999999974 4588999999999999999887655443322    1245666644  45


Q ss_pred             EEEEeC---CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC
Q 020021          176 FAVAFG---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  251 (332)
Q Consensus       176 ~~~~~~---~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  251 (332)
                      +.++.|   -.|.+||+|.-.. +..++  .+|...+.++.+++.+ +++++++.|++|.+|+..+++.+..+-   ...
T Consensus       223 ~~As~dd~~PviqlWDlR~ass-P~k~~--~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~~~  296 (1049)
T KOG0307|consen  223 LVASGDDSAPVIQLWDLRFASS-PLKIL--EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---AQG  296 (1049)
T ss_pred             eeecCCCCCceeEeecccccCC-chhhh--cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---CCC
Confidence            544443   3799999996542 33333  5677889999999877 899999999999999999999988775   356


Q ss_pred             CcceEEEECCCCC-EEEEEcCCCcEEEEECCCCc
Q 020021          252 NSTLEASFSPEGM-FVISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       252 ~~~~~v~~spdg~-~l~sgs~Dg~i~vWd~~~~~  284 (332)
                      +++..+.|.|-.- .++.++-||.|.|+.+..+.
T Consensus       297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            7889999999776 77888999999999997654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=8.8e-17  Score=139.78  Aligned_cols=201  Identities=17%  Similarity=0.181  Sum_probs=144.4

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEe
Q 020021           38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (332)
Q Consensus        38 ~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~  117 (332)
                      .+++|+++|..|++|+.||++|||+..+.+.+.....|...|..+.|+|+++.+++.+.   | ..+||+.+++..+...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C-ceEEEEeccCchhhhc
Confidence            68899999999999999999999998777777777788889999999999999988754   5 7999999998655544


Q ss_pred             e--cccccEEEEEecCCC-----CeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECc
Q 020021          118 K--GHHDRVVSLSLCSSK-----DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR  190 (332)
Q Consensus       118 ~--~h~~~V~~v~~~~~~-----~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~  190 (332)
                      .  ........+.|+.|+     ..++....-+.|+.||+                                  .+|+-.
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~----------------------------------~~w~~~  269 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI----------------------------------SLWSGS  269 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEe----------------------------------eeeccc
Confidence            3  222234455666554     12222233334444432                                  122110


Q ss_pred             cCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021          191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs  270 (332)
                      +..+.    .+.-.....+++++.|+||++++.|+.||.|-|++..+.+.++..  +..|...|+.+.|+||.+++++.|
T Consensus       270 ~~l~~----~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svS  343 (398)
T KOG0771|consen  270 NFLRL----RKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVS  343 (398)
T ss_pred             cccch----hhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCcccccc
Confidence            00000    000011236789999999999999999999999999887765533  335677899999999999999999


Q ss_pred             CCCcEEEEECCC
Q 020021          271 GDGSVYAWSVRS  282 (332)
Q Consensus       271 ~Dg~i~vWd~~~  282 (332)
                      .|..+.|..+.-
T Consensus       344 s~~~~~v~~l~v  355 (398)
T KOG0771|consen  344 SDNEAAVTKLAV  355 (398)
T ss_pred             cCCceeEEEEee
Confidence            999999887743

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.8e-14  Score=134.34  Aligned_cols=285  Identities=13%  Similarity=0.185  Sum_probs=193.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC----CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      +.|+..+++.++||.++++|+|..||.|.+|.-..    ....+.+..|...|.+++|+++|..+++|   |+++.+-+|
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG---G~E~VLv~W  278 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSG---GREGVLVLW  278 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeec---ccceEEEEE
Confidence            45788899999999999999999999999996432    22345678899999999999999999976   678999999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-------------ceeEEEcC-C
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-------------RPAAAYDD-Q  172 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-------------~~~~~~~~-~  172 (332)
                      .+++++ .+-|..-.++|..+.++||++..+....|..|.+-...+......+....             ......+| .
T Consensus       279 q~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~  357 (792)
T KOG1963|consen  279 QLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT  357 (792)
T ss_pred             eecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence            999988 44455567899999999999999999999999988764433322222110             11234445 3


Q ss_pred             CeEEEEEeCCEEEEEECccCCCC-CeeEEEecCC------CCCceeEEEcCCCCEEEEEcC--------CC--eEEEEEc
Q 020021          173 GLVFAVAFGGYIRMFDARKYEKG-PFDIFSVGGD------ISDANVVKFSNDGRLMLLTTM--------EG--HIHVLDS  235 (332)
Q Consensus       173 ~~~~~~~~~~~i~vwd~~~~~~~-~~~~~~~~~~------~~~v~~v~~s~dg~~l~~~~~--------dg--~i~i~d~  235 (332)
                      +..+..+..+.|.+||+-+...- .+.+.....+      .-.+++++.+-.|.++++.-.        ||  .++.|-.
T Consensus       358 ~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~  437 (792)
T KOG1963|consen  358 NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY  437 (792)
T ss_pred             CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence            34444555689999997543211 1111111111      123566777778888776542        22  4666764


Q ss_pred             cCCe---EeEEeeecCCCCCcceEEE-ECCCCC-EEEEEcCCCcEEEEECCCCc------------eEEEecCCCCCCce
Q 020021          236 FRGT---LLSTYNVKPVSRNSTLEAS-FSPEGM-FVISGSGDGSVYAWSVRSGK------------EVASWMSFDTEPPV  298 (332)
Q Consensus       236 ~~~~---~~~~~~~~~~~~~~~~~v~-~spdg~-~l~sgs~Dg~i~vWd~~~~~------------~~~~~~~~~~~v~~  298 (332)
                      ....   .+.+....| |.+.....+ ++|... .++++|.||.++||-+...+            .+..  .|..+++.
T Consensus       438 n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s--y~k~~i~a  514 (792)
T KOG1963|consen  438 NPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS--YHKTPITA  514 (792)
T ss_pred             cCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec--cccCcccc
Confidence            3322   222222223 344444444 444444 89999999999999883321            1222  37888999


Q ss_pred             EEeCCCeeEEEeccce-EEEecccc
Q 020021          299 IKWTPGSLMFVTGSSE-LSFWIPDL  322 (332)
Q Consensus       299 l~~sp~~~~l~t~~~d-~~~w~~~~  322 (332)
                      ++|+.||..|+.+-++ +.+|+++.
T Consensus       515 ~~fs~dGslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  515 LCFSQDGSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             hhhcCCCcEEEEecCCEEEEecCCC
Confidence            9999999888777666 99999987

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=6.7e-15  Score=140.70  Aligned_cols=284  Identities=15%  Similarity=0.223  Sum_probs=185.2

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc---cceeEEEEccCCC--EEEEecCCCCCceeEEEEc
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~--~~~~~s~~g~d~~v~v~d~  108 (332)
                      ..+-..+.|+|=.+.++++..--+|++||-+.++++.-|..+.   ..|+.+++-....  .+++++.   |+.||+|+-
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~---dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASS---DGVIRIWKD 1140 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeecc---CceEEEecc
Confidence            3456678899888899988888899999999999887776543   3467766654333  3455544   889999963


Q ss_pred             -cCC----ceEEE---eeccc----ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee-EEE---cCC
Q 020021          109 -HDN----KYLRY---FKGHH----DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAY---DDQ  172 (332)
Q Consensus       109 -~~~----~~~~~---~~~h~----~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~-~~~---~~~  172 (332)
                       ...    +.+..   +.++.    +.=.-++|.....+|+++|.-+.|+|||...+.+...+....... ...   ...
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred             cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence             332    11211   22221    111335677655566666668999999998877665553322211 111   123


Q ss_pred             CeEEEEE-eCCEEEEEECccCCCC-CeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021          173 GLVFAVA-FGGYIRMFDARKYEKG-PFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       173 ~~~~~~~-~~~~i~vwd~~~~~~~-~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (332)
                      +.++++| .||.||+||.|..... ....+.......+|.-+.+-+.|- .+++++.+|.|++||++.......+.....
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence            4555555 5899999999865432 222222222223477788877663 599999999999999987533222221110


Q ss_pred             C--CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC-------CCCCceEEeCCCeeEEEeccce--EEEe
Q 020021          250 S--RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-------DTEPPVIKWTPGSLMFVTGSSE--LSFW  318 (332)
Q Consensus       250 ~--~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l~t~~~d--~~~w  318 (332)
                      .  ....+++..+++...+|+|+. +.|.||++. |+.+..+..+       .+.+.|++|||-..+++.|+.|  +.+.
T Consensus      1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred             cccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence            0  123667888999999999998 999999984 5555544322       2456899999999999999877  7777


Q ss_pred             cccc
Q 020021          319 IPDL  322 (332)
Q Consensus       319 ~~~~  322 (332)
                      ....
T Consensus      1379 s~~k 1382 (1387)
T KOG1517|consen 1379 SCEK 1382 (1387)
T ss_pred             ecCC
Confidence            6544

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=2.7e-14  Score=122.53  Aligned_cols=235  Identities=16%  Similarity=0.259  Sum_probs=164.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      ..+..+.|..+...|..|+.||. ++|+.+.....  +.....++..+..-.....++..+. ..-..+++.+.+.+..+
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~--~~~~~~~~~IvEmLFSSSLvaiV~~-~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKC--FSKDTEGVSIVEMLFSSSLVAIVSI-KQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             cceeeeeeccceeEEEccCCCce-eEEecCchHHh--hcccCCCeEEEEeecccceeEEEec-CCCceEEEEEcccCceE
Confidence            45777789999988988999986 89988754431  1111223344443333334444332 22356888888887766


Q ss_pred             EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec-Cce--eEEEc--CCCeEEEEE---eCCEEEE
Q 020021          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRP--AAAYD--DQGLVFAVA---FGGYIRM  186 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~--~~~~~--~~~~~~~~~---~~~~i~v  186 (332)
                      ..+. ...+|.+|.++.  ++|+.+=.+ .|.|+|++..+.+.++... .++  ..+++  +.+.+++--   ..|.|.+
T Consensus        82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             EEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence            6554 456888888875  556655444 4999999999888777543 111  22333  333454432   2489999


Q ss_pred             EECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCe-EEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (332)
Q Consensus       187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~  265 (332)
                      ||+.+.+.  .  ....-|...+-+++||++|.++|++++.|+ ||+|....|+.+.+|+.... ...+.+++|+||+++
T Consensus       158 ~d~~nl~~--v--~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~  232 (391)
T KOG2110|consen  158 FDTINLQP--V--NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQF  232 (391)
T ss_pred             EEccccee--e--eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeEEEEEEECCCCCe
Confidence            99876542  2  222357788999999999999999999996 89999999999999986543 456678999999999


Q ss_pred             EEEEcCCCcEEEEECCC
Q 020021          266 VISGSGDGSVYAWSVRS  282 (332)
Q Consensus       266 l~sgs~Dg~i~vWd~~~  282 (332)
                      |++.|.-++|.||.+.+
T Consensus       233 L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  233 LAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEecCCCeEEEEEecc
Confidence            99999999999998865

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.70  E-value=9.5e-16  Score=134.05  Aligned_cols=204  Identities=14%  Similarity=0.204  Sum_probs=146.2

Q ss_pred             ccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           31 RDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      .+|+..|.+++|+..- +.|||||.|.||++||+++++|..++..|...|..+.|++....++...  ++|++|++.|..
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG--s~D~~V~l~D~R  317 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSG--SYDGTVALKDCR  317 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEec--cccceEEeeecc
Confidence            3799999999998654 6899999999999999999999999999999999999999877665543  469999999987


Q ss_pred             CCceEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCc-eEEEEEEecCc--eeEEEc--CCCeEEEEEeCCE
Q 020021          110 DNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAE-KCQGLLRVQGR--PAAAYD--DQGLVFAVAFGGY  183 (332)
Q Consensus       110 ~~~~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~  183 (332)
                      ........=.-.+.|-.+.|.+. ...++.+..||+++..|+|.. ++...++.+..  ....+.  .++.+.+++.++.
T Consensus       318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~  397 (463)
T KOG0270|consen  318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV  397 (463)
T ss_pred             CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence            42221111124567888899885 457888899999999999876 67767665532  233333  3566777778999


Q ss_pred             EEEEECccCCCCCee--EEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeE
Q 020021          184 IRMFDARKYEKGPFD--IFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTL  240 (332)
Q Consensus       184 i~vwd~~~~~~~~~~--~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~  240 (332)
                      +++|++...+.....  -+.+    ....+.++.|+- -.++.|+..+.+++||..++..
T Consensus       398 Vklw~~~~~~~~~v~~~~~~~----~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  398 VKLWKFDVDSPKSVKEHSFKL----GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             EEEEeecCCCCcccccccccc----cceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            999998654321110  0111    123344555554 3567778888899999877543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3.8e-15  Score=140.06  Aligned_cols=274  Identities=17%  Similarity=0.275  Sum_probs=181.8

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCE---EEEecCCCCCceeEEE
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT---VIYSSKNGWDESLRLL  106 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~s~~g~d~~v~v~  106 (332)
                      |.|-+..-..-.||+|+++++ +..+.+|.||.+.+++|+..+..|..++..+.+.+....   ++.++   .|+.|++|
T Consensus        12 lgg~n~~~~~avfSnD~k~l~-~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~s---l~G~I~vw   87 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLF-LCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCS---LDGTIRVW   87 (792)
T ss_pred             eccccceecccccccCCcEEE-EeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEe---cCccEEEe
Confidence            566666666677999998886 555678999999999999999999999998888876663   33343   38899999


Q ss_pred             EccCCceEEEeecccccEEEEEecC---CCCeEEEeeC-CCcEEE-EeCCCceEE-----EEE--------Eec-CceeE
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCS---SKDCFISGSL-DRTVLL-WDQRAEKCQ-----GLL--------RVQ-GRPAA  167 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~---~~~~l~s~s~-Dg~i~i-Wd~~~~~~~-----~~~--------~~~-~~~~~  167 (332)
                      |...+..++++..+.. +..+.+.|   +...++..+. |..+-. -.....+..     .++        ... .....
T Consensus        88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I  166 (792)
T KOG1963|consen   88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI  166 (792)
T ss_pred             cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence            9999998888764432 22222211   1112222221 111110 000000000     000        000 01234


Q ss_pred             EEcCCCeEEEEEeCCEEEEEECccCCC--CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC--CeE--e
Q 020021          168 AYDDQGLVFAVAFGGYIRMFDARKYEK--GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR--GTL--L  241 (332)
Q Consensus       168 ~~~~~~~~~~~~~~~~i~vwd~~~~~~--~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~--~~~--~  241 (332)
                      ++.+.+.+.....+..+.+|+......  .....  .-.|...+++.++||.+++++++..||+|.+|.-..  +..  .
T Consensus       167 ~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~--~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~  244 (792)
T KOG1963|consen  167 VDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDI--TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC  244 (792)
T ss_pred             EEcCCceEEEEEEeeeEEEEEecccceeeccchh--hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc
Confidence            555667777777888899998765221  11110  112334478899999999999999999999998543  111  1


Q ss_pred             EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021          242 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      ..++   =|...+..++||+||.+|+|||.+|.+-+|.+.+++ ..-+....++|..+.+|||+...+....|
T Consensus       245 t~lH---WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~D  313 (792)
T KOG1963|consen  245 TLLH---WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLED  313 (792)
T ss_pred             eEEE---ecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecC
Confidence            1222   245688899999999999999999999999999987 44456778899999999999877666556

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.69  E-value=1.4e-15  Score=128.24  Aligned_cols=219  Identities=14%  Similarity=0.240  Sum_probs=158.3

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc-----cceeEEEEccCCCEEEEecCCCCCceeEEEEccC-Cc--eEE
Q 020021           44 KSSSYLVTASDDESIRLYDVTAATCLKTINSKK-----YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NK--YLR  115 (332)
Q Consensus        44 ~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~-~~--~~~  115 (332)
                      |+.+++|+.+.|.-|++||.-+|+....+.+.+     .+..+++|+|+|.+++++    ..+.|+++|+.. |.  ...
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrcirvFdt~RpGr~c~vy  196 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRCIRVFDTSRPGRDCPVY  196 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec----ccceEEEeeccCCCCCCcch
Confidence            788999999999999999999999988776532     245789999999999965    478999999854 32  122


Q ss_pred             Ee-----ecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcCCCe-EEEEEe-CCEEE
Q 020021          116 YF-----KGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGL-VFAVAF-GGYIR  185 (332)
Q Consensus       116 ~~-----~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~-~~~i~  185 (332)
                      ..     .+..+-|.+++|+| +.+.++-++.-.++-|+.-..+.+..++..+  +..-..+.+++. +++++. +.+|-
T Consensus       197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl  276 (406)
T KOG2919|consen  197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL  276 (406)
T ss_pred             hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence            22     23466788999999 5568999999888888776666665555432  344556677664 454443 78999


Q ss_pred             EEECccCCCCCeeEEEecCCCC---CceeEEEcCCCCEEEEEcCCCeEEEEEccC-CeEeEEeeecCCCCCcceEEEECC
Q 020021          186 MFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSP  261 (332)
Q Consensus       186 vwd~~~~~~~~~~~~~~~~~~~---~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~sp  261 (332)
                      .||+|.....   ++.+..+..   .-.-....|+|+.|++|+.+|.|++||+.. |.....+   ..+..++..++++|
T Consensus       277 ~WDiR~~~~p---v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~---~~~sd~vNgvslnP  350 (406)
T KOG2919|consen  277 CWDIRYSRDP---VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT---GNYSDTVNGVSLNP  350 (406)
T ss_pred             EEeehhccch---hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc---ccccccccceecCc
Confidence            9999976432   233333332   222345579999999999999999999987 4433222   24567788899999


Q ss_pred             CCCEEEEEcCC
Q 020021          262 EGMFVISGSGD  272 (332)
Q Consensus       262 dg~~l~sgs~D  272 (332)
                      --..+|++|-.
T Consensus       351 ~mpilatssGq  361 (406)
T KOG2919|consen  351 IMPILATSSGQ  361 (406)
T ss_pred             ccceeeeccCc
Confidence            98888888753

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=3.5e-14  Score=132.12  Aligned_cols=224  Identities=14%  Similarity=0.147  Sum_probs=150.1

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~---D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      +.+..+...+.+.+|||||+.|+..+.   +..+.+||+.+++..... .....+....|+|+++.+++.....-+..|.
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence            445556778999999999999886543   457999999887643322 2222244578999999988764322234688


Q ss_pred             EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCC-CcEEEE--eCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-RTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  181 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~D-g~i~iW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (332)
                      +||+++++... +..+...+....|+|||+.|+..+.+ +..++|  |+.++... .                       
T Consensus       271 ~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~-----------------------  325 (429)
T PRK03629        271 VMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R-----------------------  325 (429)
T ss_pred             EEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E-----------------------
Confidence            99998877544 34444567889999999988777654 455555  33322110 0                       


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC---CeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~  258 (332)
                          +              ..  .........+||||+.++..+.+   ..|.+||+.+++.. .+..  .  .......
T Consensus       326 ----l--------------t~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~--~--~~~~~p~  380 (429)
T PRK03629        326 ----I--------------TW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD--T--FLDETPS  380 (429)
T ss_pred             ----e--------------ec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC--C--CCCCCce
Confidence                0              00  00112346899999998776543   36888999877643 2221  1  1123468


Q ss_pred             ECCCCCEEEEEcCCCc---EEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021          259 FSPEGMFVISGSGDGS---VYAWSVRSGKEVASWMSFDTEPPVIKWTP  303 (332)
Q Consensus       259 ~spdg~~l~sgs~Dg~---i~vWd~~~~~~~~~~~~~~~~v~~l~~sp  303 (332)
                      |+|||++|+.++.|+.   ++++++ +++....+..|++.+...+|+|
T Consensus       381 ~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        381 IAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            9999999999998875   777787 5666677777888889999998

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.8e-14  Score=115.40  Aligned_cols=204  Identities=16%  Similarity=0.273  Sum_probs=135.6

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC----CeeeEE----eeecc-----cceeEEEEccCCCEEEEec
Q 020021           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKT----INSKK-----YGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~----~~~~~~----~~~~~-----~~v~~~~~~~~~~~~~~~s   95 (332)
                      .+++|.++|..+.|.  ..+|++|+. |.|+=|.-..    ..+...    ...+.     ..|..+.+.|..+.++.+.
T Consensus        57 ~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag  133 (325)
T KOG0649|consen   57 PEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG  133 (325)
T ss_pred             eccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec
Confidence            458999999999998  457777765 9999996532    111111    11111     2356677777777777764


Q ss_pred             CCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeE
Q 020021           96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  175 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (332)
                        | |+.+.-||+++|+..+.++||++.|.++.--.....+.||+.||++|+||.+++++..++....++.....+-+. 
T Consensus       134 --G-D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~-  209 (325)
T KOG0649|consen  134 --G-DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGK-  209 (325)
T ss_pred             --C-CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCc-
Confidence              3 899999999999999999999999999987555668999999999999999999998877543322111100000 


Q ss_pred             EEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021          176 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (332)
Q Consensus       176 ~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  255 (332)
                                                      -+.+++.+  ...++ ++....+.+|.+++.+....+...    ..+-
T Consensus       210 --------------------------------wigala~~--edWlv-CGgGp~lslwhLrsse~t~vfpip----a~v~  250 (325)
T KOG0649|consen  210 --------------------------------WIGALAVN--EDWLV-CGGGPKLSLWHLRSSESTCVFPIP----ARVH  250 (325)
T ss_pred             --------------------------------eeEEEecc--CceEE-ecCCCceeEEeccCCCceEEEecc----ccee
Confidence                                            12223332  22333 334456777887777666555421    2333


Q ss_pred             EEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          256 EASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       256 ~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      .+.|  +...+++++....+.-|.+
T Consensus       251 ~v~F--~~d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  251 LVDF--VDDCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             Eeee--ecceEEEeccccceeeeee
Confidence            4555  4556777777778888876

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=8.8e-16  Score=130.31  Aligned_cols=183  Identities=18%  Similarity=0.236  Sum_probs=134.4

Q ss_pred             CceeEEEEccCCceEEEeecccccEEEEEecC--CCCeEEEeeCCCcEEEEeCCCceEEEEEEec---CceeEEEcC--C
Q 020021          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAAYDD--Q  172 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~---~~~~~~~~~--~  172 (332)
                      .++|++||..+++.+..+++|...++.+.|..  .+..+.||+.||+||+||++.......+...   +.+...++.  +
T Consensus        49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck  128 (376)
T KOG1188|consen   49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK  128 (376)
T ss_pred             CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence            56899999999999999999999999999986  5678999999999999999887655544332   233344443  5


Q ss_pred             CeEEEEEe-----CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021          173 GLVFAVAF-----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       173 ~~~~~~~~-----~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                      ..+++++.     +..+.+||+|..+.. +..+. ..|..+|+.+.|.|.. .++++|+.||-|.+||+....-...+..
T Consensus       129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~-eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~  206 (376)
T KOG1188|consen  129 KNIIACGTELTRSDASVVLWDVRSEQQL-LRQLN-ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH  206 (376)
T ss_pred             CCeEEeccccccCceEEEEEEeccccch-hhhhh-hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence            66777664     468999999976531 22222 2355689999999965 7899999999999999865432222211


Q ss_pred             cCCCCCcceEEEECCCC-CEEEEEcCCCcEEEEECCCCc
Q 020021          247 KPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       247 ~~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~~  284 (332)
                      ...+...|..+.|..++ +.|.+-+.+++..+|++..+.
T Consensus       207 viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  207 VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            11234456678888887 347778889999999887765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.3e-14  Score=135.14  Aligned_cols=207  Identities=16%  Similarity=0.185  Sum_probs=136.6

Q ss_pred             CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce--EEEeecccccEEEEEecCC
Q 020021           55 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--LRYFKGHHDRVVSLSLCSS  132 (332)
Q Consensus        55 D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~--~~~~~~h~~~V~~v~~~~~  132 (332)
                      +.+|.+||....+ .+.+..+...+...+|+|+++.+++.+...-+..|.+||+.+++.  +..+.+|.   ..++|+||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCC
Confidence            5799999987544 556666666788899999999998876533346799999988754  33344443   46799999


Q ss_pred             CCeEEEee-CCCcEEEEe--CCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCc
Q 020021          133 KDCFISGS-LDRTVLLWD--QRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA  209 (332)
Q Consensus       133 ~~~l~s~s-~Dg~i~iWd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v  209 (332)
                      |+.|+.++ .||.+.+|.  +.++.....                                            ..+...+
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~l--------------------------------------------t~~~~~~  294 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTPSQL--------------------------------------------TSGAGNN  294 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCeEee--------------------------------------------ccCCCCc
Confidence            99888764 688776664  333221100                                            0011234


Q ss_pred             eeEEEcCCCCEEEEEc-CCCeEEEEEccCC-eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 020021          210 NVVKFSNDGRLMLLTT-MEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA  287 (332)
Q Consensus       210 ~~v~~s~dg~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~  287 (332)
                      ....|||||+.++..+ .+|..++|++... .....+.    +..  ....|||||++|+.++.++ +.+||+.+++...
T Consensus       295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~----~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~  367 (429)
T PRK01742        295 TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG----GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV  367 (429)
T ss_pred             CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec----CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE
Confidence            5678999999776554 5677788876432 1122221    111  2467999999999888765 5669998876543


Q ss_pred             EecCCCCCCceEEeCCCeeEEEeccce--EEEe
Q 020021          288 SWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW  318 (332)
Q Consensus       288 ~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w  318 (332)
                      ....+  ....++|+|||++++.++.+  ..+|
T Consensus       368 lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l  398 (429)
T PRK01742        368 LSSTF--LDESPSISPNGIMIIYSSTQGLGKVL  398 (429)
T ss_pred             ecCCC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence            22222  23568899999999987765  4444

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.6e-15  Score=136.21  Aligned_cols=275  Identities=17%  Similarity=0.219  Sum_probs=181.2

Q ss_pred             EEECCCC--CEEEEEeCCCcEEEE--EcCCC--------------------eeeEEeeecccceeEEEEccCCCEEEEec
Q 020021           40 MDFHKSS--SYLVTASDDESIRLY--DVTAA--------------------TCLKTINSKKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        40 i~~s~dg--~~l~tgs~D~tv~iw--d~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      |++.|.+  +..++...|.-.++|  ++...                    ....++..|...+....|++....++.++
T Consensus       234 i~~~~~~~k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~s  313 (577)
T KOG0642|consen  234 ITNPPEGTKSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITAS  313 (577)
T ss_pred             ccCCcccCCCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEec
Confidence            5555544  566777777888888  43211                    11224556666777788888888888886


Q ss_pred             CCCCCceeEEEEccC--------CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce----------EEE
Q 020021           96 KNGWDESLRLLSLHD--------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK----------CQG  157 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~--------~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~----------~~~  157 (332)
                      .   |+.+++|+++.        -+++.+|++|.++|.++++.+.+.++.||+-||+|+.|++..+.          ...
T Consensus       314 e---d~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~  390 (577)
T KOG0642|consen  314 E---DGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG  390 (577)
T ss_pred             c---ccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence            5   88999999922        23688999999999999999999999999999999999653211          112


Q ss_pred             EEEecCce--eEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEE
Q 020021          158 LLRVQGRP--AAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVL  233 (332)
Q Consensus       158 ~~~~~~~~--~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~  233 (332)
                      .+..+...  ...++. ..+++++++||++|.|+........+......+   --.++.+-... .+.++...-+.-.+.
T Consensus       391 ~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g---~Plsvd~~ss~~a~~~~s~~~~~~~~~  467 (577)
T KOG0642|consen  391 TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG---YPLSVDRTSSRPAHSLASFRFGYTSID  467 (577)
T ss_pred             ceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccC---CcceEeeccchhHhhhhhcccccccch
Confidence            22222222  234443 456788889999999987654432122111111   11223332111 122222222333333


Q ss_pred             EccCCeEeEEeeec--CC--CCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEE
Q 020021          234 DSFRGTLLSTYNVK--PV--SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV  309 (332)
Q Consensus       234 d~~~~~~~~~~~~~--~~--~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  309 (332)
                      |......+..+...  +.  ....+..+...|.+.+.+++.+|+.|+++|..+++.++....|...++++++.|+|-+|+
T Consensus       468 ~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~  547 (577)
T KOG0642|consen  468 DMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLM  547 (577)
T ss_pred             hhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEE
Confidence            43333333332211  11  113445678889999999999999999999999999999999999999999999999999


Q ss_pred             eccce--EEEecc
Q 020021          310 TGSSE--LSFWIP  320 (332)
Q Consensus       310 t~~~d--~~~w~~  320 (332)
                      +++.|  +.+|..
T Consensus       548 s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  548 SGSHDGSVRLWKL  560 (577)
T ss_pred             eecCCceeehhhc
Confidence            99998  555544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.67  E-value=1.8e-15  Score=130.95  Aligned_cols=214  Identities=20%  Similarity=0.285  Sum_probs=152.9

Q ss_pred             CCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021           34 NGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (332)
Q Consensus        34 ~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~  112 (332)
                      ..+|.++.|.+.+. .||||+.|..||||-++.++.                  .          +-+..|        +
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~------------------~----------~~~~~V--------~   56 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEP------------------G----------GGDMKV--------E   56 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCC------------------C----------CCceeE--------E
Confidence            35799999988765 999999999999998764321                  0          001111        3


Q ss_pred             eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccC
Q 020021          113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  192 (332)
Q Consensus       113 ~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~  192 (332)
                      ++..|.+|+..|+.+.|+|+|+.|+||+.+|.+.+|-.......     .        .+.   -...+.          
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-----~--------~d~---e~~~~k----------  110 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-----D--------ADT---EADLNK----------  110 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-----c--------ccc---hhhhCc----------
Confidence            35567889999999999999999999999999999965321100     0        000   000000          


Q ss_pred             CCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC
Q 020021          193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  272 (332)
Q Consensus       193 ~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D  272 (332)
                       ........+.+|..++..++++||+.++++++.|..+++||+..|.++..+.   .|...+..++|.|-++|+++-|.|
T Consensus       111 -e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~---dh~~yvqgvawDpl~qyv~s~s~d  186 (434)
T KOG1009|consen  111 -EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD---DHEHYVQGVAWDPLNQYVASKSSD  186 (434)
T ss_pred             -cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc---ccccccceeecchhhhhhhhhccC
Confidence             0011122344577788999999999999999999999999999999887665   456677789999999999999999


Q ss_pred             CcEEEEECCCCceEEEec-------------------CCCC----CCceEEeCCCeeEEEeccc
Q 020021          273 GSVYAWSVRSGKEVASWM-------------------SFDT----EPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       273 g~i~vWd~~~~~~~~~~~-------------------~~~~----~v~~l~~sp~~~~l~t~~~  313 (332)
                      ...+++.+...+.+....                   -|+.    ....++|+|||.+|++.+.
T Consensus       187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag  250 (434)
T KOG1009|consen  187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG  250 (434)
T ss_pred             cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence            988888876544322111                   1111    1244899999999998654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.2e-15  Score=127.93  Aligned_cols=257  Identities=16%  Similarity=0.251  Sum_probs=157.2

Q ss_pred             ccceeEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccc-eeEEEEccC--CCEEEEecC-C
Q 020021           24 MEVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTSH--PTTVIYSSK-N   97 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~--dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~--~~~~~~~s~-~   97 (332)
                      ...+..|++|.+.++.+.|..  ....+.+++.||+||+||+.+......+...+.+ -...+|..+  ...+.++.- .
T Consensus        60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~  139 (376)
T KOG1188|consen   60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT  139 (376)
T ss_pred             hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc
Confidence            345667899999999999976  4578899999999999999876554443332222 223444443  333333321 1


Q ss_pred             CCCceeEEEEccCCce-EEE-eecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceE----EEEEEecC-ceeEEE
Q 020021           98 GWDESLRLLSLHDNKY-LRY-FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKC----QGLLRVQG-RPAAAY  169 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~-~~~-~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~----~~~~~~~~-~~~~~~  169 (332)
                      +.+-.+.+||+...+. +.. ...|.+.|+++.|+| +.+.|+|||-||.|.++|++....    ..++.... .....+
T Consensus       140 ~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw  219 (376)
T KOG1188|consen  140 RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGW  219 (376)
T ss_pred             cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeee
Confidence            2356799999977554 443 457999999999999 678999999999999999865432    11222111 223444


Q ss_pred             cCCC--eEEEEEeCCEEEEEECccCCCCC-eeE--EEec---CCCC-CceeEEEcC-CCCEEEEE-cCCCeEEEEEc---
Q 020021          170 DDQG--LVFAVAFGGYIRMFDARKYEKGP-FDI--FSVG---GDIS-DANVVKFSN-DGRLMLLT-TMEGHIHVLDS---  235 (332)
Q Consensus       170 ~~~~--~~~~~~~~~~i~vwd~~~~~~~~-~~~--~~~~---~~~~-~v~~v~~s~-dg~~l~~~-~~dg~i~i~d~---  235 (332)
                      ..++  ++++.+...+..+|++....... +..  ....   ...+ .-..=+.+| ++...+.+ +.-++..++-+   
T Consensus       220 ~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~  299 (376)
T KOG1188|consen  220 LSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDT  299 (376)
T ss_pred             ecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeec
Confidence            4555  68888888899999876543100 000  0000   0000 000012333 33444444 33455444433   


Q ss_pred             cCCeEeEEe-eecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          236 FRGTLLSTY-NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       236 ~~~~~~~~~-~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      .++..+... ....++...|.++.|...+.++.||++||.+.+|..
T Consensus       300 ~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  300 SSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             ccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            233322211 122335556777889899999999999999999986

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.66  E-value=1.5e-14  Score=120.52  Aligned_cols=257  Identities=14%  Similarity=0.190  Sum_probs=172.9

Q ss_pred             ccceeEeccCCCcEEEEEEC--CC-CCEEEEEeC----CCcEEEEEc--CCCeeeEEe-eecccceeEEEEccCCC----
Q 020021           24 MEVGMSFRDYNGRISSMDFH--KS-SSYLVTASD----DESIRLYDV--TAATCLKTI-NSKKYGVDLVCFTSHPT----   89 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s--~d-g~~l~tgs~----D~tv~iwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~~----   89 (332)
                      .+.+..+.++- .++++.||  |+ +.+||-|+.    ...|.|-.+  ++++.+..- ..|.++++.+-|.|+..    
T Consensus        35 ~~eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p  113 (364)
T KOG0290|consen   35 RKEIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP  113 (364)
T ss_pred             cceEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc
Confidence            33333444333 57788888  33 356888873    244555433  355554433 25778899999999874    


Q ss_pred             EEEEecCCCCCceeEEEEccC--Cce--EEE-----eecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEE
Q 020021           90 TVIYSSKNGWDESLRLLSLHD--NKY--LRY-----FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLL  159 (332)
Q Consensus        90 ~~~~~s~~g~d~~v~v~d~~~--~~~--~~~-----~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  159 (332)
                      .+++.+    +..+|+|.+..  ++.  ...     -..+-+++++.+|+. +.+++.+.|-|-|+.|||++++... ..
T Consensus       114 dlLATs----~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~-~v  188 (364)
T KOG0290|consen  114 DLLATS----SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG-TV  188 (364)
T ss_pred             chhhcc----cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc-ce
Confidence            234333    35799999863  221  111     234667899999997 7889999999999999999775210 00


Q ss_pred             EecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCC
Q 020021          160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRG  238 (332)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~  238 (332)
                                               +             + .+-.|..+|..++|+.++ .++++.+.||.+++||++..
T Consensus       189 -------------------------k-------------T-QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l  229 (364)
T KOG0290|consen  189 -------------------------K-------------T-QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL  229 (364)
T ss_pred             -------------------------e-------------e-EEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc
Confidence                                     0             0 011244567888998866 57889999999999999875


Q ss_pred             eEeEEeeecCCCCCcceEEEECCC-CCEEEEEcCCC-cEEEEECCC-CceEEEecCCCCCCceEEeCCC-eeEEEeccce
Q 020021          239 TLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDG-SVYAWSVRS-GKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSE  314 (332)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg-~i~vWd~~~-~~~~~~~~~~~~~v~~l~~sp~-~~~l~t~~~d  314 (332)
                      +--..+.-.+....+..+++|+++ -+|+|+-..|. .|.|-|++. +..+..+..|.+.|+.++|.|. ...++|++.|
T Consensus       230 eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD  309 (364)
T KOG0290|consen  230 EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD  309 (364)
T ss_pred             ccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence            433222212333456677888874 57888887776 688999975 4567889999999999999996 4789999999


Q ss_pred             EEEeccccccc
Q 020021          315 LSFWIPDLSKL  325 (332)
Q Consensus       315 ~~~w~~~~~~~  325 (332)
                      .+...|+++..
T Consensus       310 ~qaliWDl~q~  320 (364)
T KOG0290|consen  310 CQALIWDLQQM  320 (364)
T ss_pred             ceEEEEecccc
Confidence            55555555443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.66  E-value=7.6e-15  Score=122.16  Aligned_cols=248  Identities=13%  Similarity=0.232  Sum_probs=171.5

Q ss_pred             cceeEeccCCCcEEEEEECCCCC-EEEEEeCC-------CcEEEEEcCC---------CeeeEEee-ecccceeEEEEcc
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSS-YLVTASDD-------ESIRLYDVTA---------ATCLKTIN-SKKYGVDLVCFTS   86 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~-~l~tgs~D-------~tv~iwd~~~---------~~~~~~~~-~~~~~v~~~~~~~   86 (332)
                      -.-++|..|.++|..|+-+|-.. +|+|+-.|       ..+-||.+..         .+++..+. .+-..+.++.|.|
T Consensus        54 l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P  133 (370)
T KOG1007|consen   54 LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP  133 (370)
T ss_pred             hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC
Confidence            34467888999999999998664 55665543       4578997642         33444444 2334688999999


Q ss_pred             CCCEEEEecCCCCCceeEEEEccCCce-EEEe-----ecccccEEEEEecC--CCCeEEEeeCCCcEEEEeCCCceEEEE
Q 020021           87 HPTTVIYSSKNGWDESLRLLSLHDNKY-LRYF-----KGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGL  158 (332)
Q Consensus        87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~-~~~~-----~~h~~~V~~v~~~~--~~~~l~s~s~Dg~i~iWd~~~~~~~~~  158 (332)
                      ++.++++..    |+.|.+|++..+.. ...+     .+|+...++-.|+|  +++.|++. .|++++.||+++.++...
T Consensus       134 ns~klasm~----dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s  208 (370)
T KOG1007|consen  134 NSDKLASMD----DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS  208 (370)
T ss_pred             CCCeeEEec----cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcc
Confidence            999998775    78999999988664 2222     23566677777887  45666554 568888888877654322


Q ss_pred             EEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccC
Q 020021          159 LRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFR  237 (332)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~  237 (332)
                      +.-                                          .|...++.+.|+|..+ +|++++.||.|++||.+.
T Consensus       209 I~d------------------------------------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~  246 (370)
T KOG1007|consen  209 IED------------------------------------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK  246 (370)
T ss_pred             hhh------------------------------------------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence            210                                          0112356678888775 567889999999999986


Q ss_pred             Ce-EeEEeeecCCCCCcceEEEECCC-CCEEEEEcCCCcEEEEECCCC-----------------------------ceE
Q 020021          238 GT-LLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSG-----------------------------KEV  286 (332)
Q Consensus       238 ~~-~~~~~~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd~~~~-----------------------------~~~  286 (332)
                      .+ ++.++.   .|.-.+++|.|.|- .+.++|||.|..|.+|....-                             ..+
T Consensus       247 tk~pv~el~---~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l  323 (370)
T KOG1007|consen  247 TKFPVQELP---GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQL  323 (370)
T ss_pred             CCccccccC---CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccc
Confidence            54 333333   56778999999984 688999999999999955320                             013


Q ss_pred             EEecCCCCCCceEEeCCC-eeEEEeccceEEEecccc
Q 020021          287 ASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDL  322 (332)
Q Consensus       287 ~~~~~~~~~v~~l~~sp~-~~~l~t~~~d~~~w~~~~  322 (332)
                      .++..|...|.+++||.- ==.|++-++|.++-.-..
T Consensus       324 ~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  324 ETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             ccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence            345578888999999774 457788888866654433

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.66  E-value=9.5e-16  Score=132.32  Aligned_cols=166  Identities=20%  Similarity=0.351  Sum_probs=131.5

Q ss_pred             EeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCC
Q 020021          116 YFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEK  194 (332)
Q Consensus       116 ~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~  194 (332)
                      .+.||+++|..++|+|. ...+||||.|.+|++|.+-.+.....+.                                  
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt----------------------------------  121 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT----------------------------------  121 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------------------------------
Confidence            35799999999999995 4588999999999999985543211110                                  


Q ss_pred             CCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC
Q 020021          195 GPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  273 (332)
Q Consensus       195 ~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg  273 (332)
                        -....+.||...|..++++|.. ..|++++.|.+|.+|++.+|+.+-++.    |...+.++.|+.||.+|+|.+.|+
T Consensus       122 --epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~dGs~l~TtckDK  195 (472)
T KOG0303|consen  122 --EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNRDGSLLCTTCKDK  195 (472)
T ss_pred             --cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEeccCCceeeeecccc
Confidence              0112334566677788898876 678899999999999999998776654    678899999999999999999999


Q ss_pred             cEEEEECCCCceEEEecCCCC-CCceEEeCCCeeEEEeccc---e--EEEeccc
Q 020021          274 SVYAWSVRSGKEVASWMSFDT-EPPVIKWTPGSLMFVTGSS---E--LSFWIPD  321 (332)
Q Consensus       274 ~i~vWd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~t~~~---d--~~~w~~~  321 (332)
                      .|||||..+++.+..-+.|.+ ....+.|-.++..+.||-+   +  +.+|+++
T Consensus       196 kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  196 KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             eeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence            999999999999988888875 4566778888888888754   3  7778763

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.5e-15  Score=132.13  Aligned_cols=189  Identities=19%  Similarity=0.168  Sum_probs=134.4

Q ss_pred             eEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEE
Q 020021           80 DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL  159 (332)
Q Consensus        80 ~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  159 (332)
                      ..++|..++..++++.   .|+++|+|++.+...+.....|.+.|..++|+|||+.|+|-+.| ..++|+.+++.+....
T Consensus       148 k~vaf~~~gs~latgg---~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGG---TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeecc---ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            4688999988888774   48999999998888888888999999999999999999999999 8899999887543322


Q ss_pred             EecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-----CEEEEEcCCCeEEEEE
Q 020021          160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-----RLMLLTTMEGHIHVLD  234 (332)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-----~~l~~~~~dg~i~i~d  234 (332)
                      ....                                         .......|.|+-|+     ++++....-+.|+.+|
T Consensus       224 t~~~-----------------------------------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~  262 (398)
T KOG0771|consen  224 TPFS-----------------------------------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD  262 (398)
T ss_pred             CCcc-----------------------------------------cchhhhhceecccCCCceEEEEEecCCCCceeEEE
Confidence            1000                                         00112234454444     2222233334455544


Q ss_pred             ccCCe---EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEE-ecCCCCCCceEEeCCCeeEEEe
Q 020021          235 SFRGT---LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVT  310 (332)
Q Consensus       235 ~~~~~---~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~t  310 (332)
                      +....   .+.... .....+.+.+++.|+||+++|-|+.||.|-|++..+-+.+.- ...|...|+.|.|+||.+.+++
T Consensus       263 ~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  263 ISLWSGSNFLRLRK-KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             eeeeccccccchhh-hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence            32211   111000 011124677899999999999999999999999988776554 3678899999999999999988


Q ss_pred             ccce
Q 020021          311 GSSE  314 (332)
Q Consensus       311 ~~~d  314 (332)
                      .+++
T Consensus       342 vSs~  345 (398)
T KOG0771|consen  342 VSSD  345 (398)
T ss_pred             cccC
Confidence            7776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1.4e-13  Score=128.35  Aligned_cols=225  Identities=16%  Similarity=0.174  Sum_probs=149.0

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D---~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      .+.+..|...+.+..|+|||+.|+..+.+   ..|.+||+.+++... +...........|+|+++.+++.....-+..|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence            45566778889999999999999988754   469999998877543 22223234467899999988765322224579


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC-CCcEEE--EeCCCceEEEEEEecCceeEEEcCCCeEEEEEe
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLL--WDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF  180 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~i--Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (332)
                      .+||+.+++. ..+..|.......+|+|||+.++..+. ++...+  +|+.+++....                      
T Consensus       275 y~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l----------------------  331 (433)
T PRK04922        275 YVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL----------------------  331 (433)
T ss_pred             EEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----------------------
Confidence            9999988764 445556555677899999998887663 444333  34333221100                      


Q ss_pred             CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC---eEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~v  257 (332)
                                          ...+  ......++||||+.++..+.++   .|.+||+.+++.. .+.    +.......
T Consensus       332 --------------------t~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----~~~~~~~p  384 (433)
T PRK04922        332 --------------------TFQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT----PGSLDESP  384 (433)
T ss_pred             --------------------ecCC--CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC----CCCCCCCc
Confidence                                0000  1123468999999988765443   6999999877654 222    11123356


Q ss_pred             EECCCCCEEEEEcCC---CcEEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021          258 SFSPEGMFVISGSGD---GSVYAWSVRSGKEVASWMSFDTEPPVIKWTP  303 (332)
Q Consensus       258 ~~spdg~~l~sgs~D---g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp  303 (332)
                      .|+|||++++..+.+   +.++++++. +.....+..+.+.+...+|+|
T Consensus       385 ~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        385 SFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            899999998877664   368888884 445555655666778888887

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=8.3e-13  Score=111.51  Aligned_cols=237  Identities=15%  Similarity=0.236  Sum_probs=155.7

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC----CCCceeEEEEccCCc
Q 020021           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN----GWDESLRLLSLHDNK  112 (332)
Q Consensus        37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~----g~d~~v~v~d~~~~~  112 (332)
                      ..+++|+.|..-+ +.+.|.-.|||+.+..+....-..+..+...+..-...+.++....+    -.-+.+-+||-....
T Consensus         8 ~lsvs~NQD~ScF-ava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    8 TLSVSFNQDHSCF-AVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             eeEEEEccCCceE-EEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            3458998877555 56667778999998643322222222222222211122222222111    124679999966666


Q ss_pred             eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC-CceEEEEEEecCce--eEEEcC--CCeEEEEEe--CCEEE
Q 020021          113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRVQGRP--AAAYDD--QGLVFAVAF--GGYIR  185 (332)
Q Consensus       113 ~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~-~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~--~~~i~  185 (332)
                      ++..+. -..+|.++.+.++.  +|.. .+..|.+|.+. ..+.+..+.....|  .+.+.+  +..+++.-.  -|.|+
T Consensus        87 ~i~el~-f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ  162 (346)
T KOG2111|consen   87 CIIELS-FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ  162 (346)
T ss_pred             EEEEEE-eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence            666665 67889999998744  4333 46789999886 34444444332222  122222  223333222  48999


Q ss_pred             EEECccCCCC-CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCe-EEEEEccCCeEeEEeeecCCCCCcceEEEECCCC
Q 020021          186 MFDARKYEKG-PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (332)
Q Consensus       186 vwd~~~~~~~-~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg  263 (332)
                      +-|+...... +..   ...|.+++.+++.+-+|+++|+++..|+ |||||..+|+++.+++... ....+.+++||||.
T Consensus       163 i~dL~~~~~~~p~~---I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  163 IVDLASTKPNAPSI---INAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNS  238 (346)
T ss_pred             EEEhhhcCcCCceE---EEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCc
Confidence            9998765442 222   2246788999999999999999999997 8999999999999998653 34677899999999


Q ss_pred             CEEEEEcCCCcEEEEECCC
Q 020021          264 MFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       264 ~~l~sgs~Dg~i~vWd~~~  282 (332)
                      .+||.+|+-|++.|+.+..
T Consensus       239 s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  239 SWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             cEEEEEcCCCeEEEEEeec
Confidence            9999999999999999865

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.63  E-value=4.7e-14  Score=119.50  Aligned_cols=274  Identities=14%  Similarity=0.267  Sum_probs=181.7

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeec
Q 020021           40 MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG  119 (332)
Q Consensus        40 i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~  119 (332)
                      .+|||+|+++|+.+.- .+-|-|.++.+..+.+.- -..|.-+.|..+...++.+..  -++.|.+|++...+.-..+..
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~y--k~~~vqvwsl~Qpew~ckIde   89 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAY--KDPKVQVWSLVQPEWYCKIDE   89 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeee--ccceEEEEEeecceeEEEecc
Confidence            4799999999998876 788889887665443322 224555677777777776542  377899999999998888998


Q ss_pred             ccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEec-CceeEEEcCCCeEEEEEe--C--------------
Q 020021          120 HHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAF--G--------------  181 (332)
Q Consensus       120 h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~--------------  181 (332)
                      -.+.+..++|+|||+ .|.+...|-.|.+|.+.+.++....... ......+++++++.+...  |              
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~  169 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI  169 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence            999999999999996 5567778999999999887764332111 122345566665555443  1              


Q ss_pred             ---------------------CEEEEEECccCCCCCeeEEEecCCC-CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe
Q 020021          182 ---------------------GYIRMFDARKYEKGPFDIFSVGGDI-SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  239 (332)
Q Consensus       182 ---------------------~~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~  239 (332)
                                           +.+.+||.-      ++..-.+.+. ..+..+++||-++++++|+.|+.+++.+-.+-+
T Consensus       170 ll~~f~~dT~DltgieWsPdg~~laVwd~~------Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk  243 (447)
T KOG4497|consen  170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNV------LEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK  243 (447)
T ss_pred             HHHhcCCCcccccCceECCCCcEEEEecch------hhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence                                 223333321      1101111122 256778999999999999999999886543322


Q ss_pred             EeEEe----------------------------------------------------------ee-----cCCCCCcceE
Q 020021          240 LLSTY----------------------------------------------------------NV-----KPVSRNSTLE  256 (332)
Q Consensus       240 ~~~~~----------------------------------------------------------~~-----~~~~~~~~~~  256 (332)
                      ...++                                                          ..     .+.+...+..
T Consensus       244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~  323 (447)
T KOG4497|consen  244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK  323 (447)
T ss_pred             ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence            21111                                                          00     0111112335


Q ss_pred             EEECCCCCEEEEEcCC--CcEEEEECCCCceEEEecCCCCCCceEEeCCCee--EEEeccceEEEecccccc
Q 020021          257 ASFSPEGMFVISGSGD--GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSSELSFWIPDLSK  324 (332)
Q Consensus       257 v~~spdg~~l~sgs~D--g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~t~~~d~~~w~~~~~~  324 (332)
                      ++||+|..|+||-.+.  ..+-+||+++.+. +...-...+|....|+|..-  .+++|++-+.+|.|....
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l-~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~  394 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKL-HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR  394 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhh-hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence            8999999999998432  3799999988654 33333345788999999864  445667778889876543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.63  E-value=1.6e-15  Score=133.34  Aligned_cols=231  Identities=13%  Similarity=0.174  Sum_probs=180.7

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEE
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR  115 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~  115 (332)
                      .-..+.++.+|.+|+-|+.-|-|-.+|-.++.....+..-. .|..+.|-.+..+++.+-    ...+.+||- .|..++
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-tv~Dv~~LHneq~~AVAQ----K~y~yvYD~-~GtElH  204 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-TVRDVTFLHNEQFFAVAQ----KKYVYVYDN-NGTELH  204 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-hhhhhhhhcchHHHHhhh----hceEEEecC-CCcEEe
Confidence            34578899999999999999999999999988877665432 466677776666665543    456888885 457788


Q ss_pred             EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCC
Q 020021          116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG  195 (332)
Q Consensus       116 ~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~  195 (332)
                      +++.| ..|..+.|-|..=.|++++.-|-+++-|+++++.+..+....                                
T Consensus       205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~--------------------------------  251 (545)
T KOG1272|consen  205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA--------------------------------  251 (545)
T ss_pred             ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC--------------------------------
Confidence            88866 568999999988899999999999999998887643332110                                


Q ss_pred             CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcE
Q 020021          196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  275 (332)
Q Consensus       196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i  275 (332)
                                 ..+..++.+|-..++-.|..+|+|.+|...+.+++..+-   .|..++.++++.++|+|+||.+.|..+
T Consensus       252 -----------G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL---cH~g~V~siAv~~~G~YMaTtG~Dr~~  317 (545)
T KOG1272|consen  252 -----------GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL---CHRGPVSSIAVDRGGRYMATTGLDRKV  317 (545)
T ss_pred             -----------CccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH---hcCCCcceEEECCCCcEEeecccccce
Confidence                       123345667777788899999999999998877765544   477889999999999999999999999


Q ss_pred             EEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceEEEecc
Q 020021          276 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  320 (332)
Q Consensus       276 ~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~  320 (332)
                      +|||+.+...+.+... +-+...++||.-|.+.++-+.-+++|--
T Consensus       318 kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  318 KIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKD  361 (545)
T ss_pred             eEeeeccccccceeec-CCCccccccccccceeeecCCeeeeehh
Confidence            9999998877766544 3456789998888777777777999954

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.62  E-value=1.1e-13  Score=129.47  Aligned_cols=260  Identities=12%  Similarity=0.171  Sum_probs=170.8

Q ss_pred             CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce--EE----EeecccccEEEEEe
Q 020021           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--LR----YFKGHHDRVVSLSL  129 (332)
Q Consensus        56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~--~~----~~~~h~~~V~~v~~  129 (332)
                      ..+.||++......+..-..+..|.+++|.|....++++.  ..+++|.+||+..+..  ..    ....|..+|+.+.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG--~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGG--CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEee--ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            4789999987633333333455789999999877766654  3589999999987654  21    23468899999998


Q ss_pred             cCCC--CeEEEeeCCCcEEEEeCCCceEE------EEEE--------ecCceeEEEcC--CCeEEEEEeCCEEEEEECcc
Q 020021          130 CSSK--DCFISGSLDRTVLLWDQRAEKCQ------GLLR--------VQGRPAAAYDD--QGLVFAVAFGGYIRMFDARK  191 (332)
Q Consensus       130 ~~~~--~~l~s~s~Dg~i~iWd~~~~~~~------~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~i~vwd~~~  191 (332)
                      ..+.  .-|+|+|.||.|..|+++.-..-      ....        ..+.....+.+  ...++.++.+|.|.--+-..
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            7543  45999999999999987543220      0000        01112334433  33455555668776633222


Q ss_pred             CCCCC---ee-EEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc-CCeEeEEeeecCCCCCcceEEEECCCC-CE
Q 020021          192 YEKGP---FD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEG-MF  265 (332)
Q Consensus       192 ~~~~~---~~-~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~v~~spdg-~~  265 (332)
                      .....   +. +.....+...++++.++|=+..+...+.|-+++||... ...++..+.   .+...+.+++|||-- -.
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~---~~~~~v~~vaWSptrpav  456 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD---SSPDYVTDVAWSPTRPAV  456 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh---hccceeeeeEEcCcCceE
Confidence            22222   01 11223456789999999988766666669999999976 444443333   233457899999976 46


Q ss_pred             EEEEcCCCcEEEEECCC--CceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          266 VISGSGDGSVYAWSVRS--GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       266 l~sgs~Dg~i~vWd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      +|++..||.|.+||+..  .+.+.+........+.+.|+++++.++.|...  +.++..
T Consensus       457 F~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  457 FATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             EEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            77778899999999954  33455554456667889999999999999876  455543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=1.7e-13  Score=127.81  Aligned_cols=206  Identities=14%  Similarity=0.131  Sum_probs=135.6

Q ss_pred             CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCe
Q 020021           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  135 (332)
Q Consensus        56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~  135 (332)
                      .+|.+||... ...+.+..+...+....|+|+++.+++.+..+.+..+.+||+.+++... +..+........|+|||+.
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            4699999864 4445565666677888999999999887654445679999998876533 3344445557899999987


Q ss_pred             EE-EeeCCC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeE
Q 020021          136 FI-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV  212 (332)
Q Consensus       136 l~-s~s~Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v  212 (332)
                      ++ +.+.++  .|.+||+.++......                                            .+.......
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt--------------------------------------------~~~~~~~~~  297 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLTRLT--------------------------------------------NHFGIDTEP  297 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeEECc--------------------------------------------cCCCCccce
Confidence            65 556665  4777777655321100                                            001112346


Q ss_pred             EEcCCCCEEEEEcC-CC--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC---cEEEEECCCCceE
Q 020021          213 KFSNDGRLMLLTTM-EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEV  286 (332)
Q Consensus       213 ~~s~dg~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg---~i~vWd~~~~~~~  286 (332)
                      +|||||+.++..+. +|  .|+++|+.+++... +..   ........+|||||++|+..+.++   .|++||+.+++..
T Consensus       298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~---~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF---QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             EECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec---CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            89999998887654 44  47777776665432 221   112233579999999998765443   6999999877643


Q ss_pred             EEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          287 ASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       287 ~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                       .+. +.......+|+|||++++..+.
T Consensus       374 -~Lt-~~~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        374 -TLT-PGSLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             -ECC-CCCCCCCceECCCCCEEEEEEe
Confidence             333 3334556799999998776554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=7.5e-13  Score=123.25  Aligned_cols=224  Identities=15%  Similarity=0.157  Sum_probs=146.7

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D---~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      .+.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +...........|+|++..++++...  ++..
T Consensus       188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~--~g~~  264 (427)
T PRK02889        188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSR--DGNS  264 (427)
T ss_pred             ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEcc--CCCc
Confidence            34566788889999999999999887754   359999999887543 32223334567899999988765422  4444


Q ss_pred             EEE--EccCCceEEEeecccccEEEEEecCCCCeEEEeeC-CCcEEEEeCC--CceEEEEEEecCceeEEEcCCCeEEEE
Q 020021          104 RLL--SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQR--AEKCQGLLRVQGRPAAAYDDQGLVFAV  178 (332)
Q Consensus       104 ~v~--d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      .+|  |+.++. ...+..|........|+|||+.++..+. ++...+|.+.  ++...                      
T Consensus       265 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----------------------  321 (427)
T PRK02889        265 QIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----------------------  321 (427)
T ss_pred             eEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE----------------------
Confidence            555  555544 4556556666677899999998876654 4666777542  11110                      


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC---eEEEEEccCCeEeEEeeecCCCCCcce
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~  255 (332)
                            ++              ...+  .......|||||++++..+.++   .|.+||+.+++... +..  .  ....
T Consensus       322 ------~l--------------t~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~--~--~~~~  374 (427)
T PRK02889        322 ------RV--------------TFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD--T--TRDE  374 (427)
T ss_pred             ------EE--------------ecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC--C--CCcc
Confidence                  00              0000  0112357999999998776554   69999998776432 211  1  1224


Q ss_pred             EEEECCCCCEEEEEcCCC---cEEEEECCCCceEEEecCCCCCCceEEeCCC
Q 020021          256 EASFSPEGMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  304 (332)
Q Consensus       256 ~v~~spdg~~l~sgs~Dg---~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~  304 (332)
                      ...|+|||++|+.++.++   .+++-++ +++....+..+.+.+...+|+|-
T Consensus       375 ~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        375 SPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            568999999999887655   3666666 45555556556677788888883

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=2.4e-12  Score=110.70  Aligned_cols=152  Identities=13%  Similarity=0.226  Sum_probs=108.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeec-ccceeEEEEccCC--CEEEEecCCCCCceeEEEEccCC
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHP--TTVIYSSKNGWDESLRLLSLHDN  111 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~--~~~~~~s~~g~d~~v~v~d~~~~  111 (332)
                      .+|.+|.++.  ++|+..=.+. |.|||+.+.+.++++..- ..+--.++++++.  .++++-++.. .+.|.+||..+-
T Consensus        88 t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-~GdV~l~d~~nl  163 (391)
T KOG2110|consen   88 TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-SGDVVLFDTINL  163 (391)
T ss_pred             CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-CceEEEEEcccc
Confidence            5677888875  4555555554 999999999999998654 2222244555544  4666643322 578999999998


Q ss_pred             ceEEEeecccccEEEEEecCCCCeEEEeeCCCc-EEEEeCCCceEEEEEEecCce----eEEEcCCCeEEEEEe-CCEEE
Q 020021          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT-VLLWDQRAEKCQGLLRVQGRP----AAAYDDQGLVFAVAF-GGYIR  185 (332)
Q Consensus       112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~i~  185 (332)
                      +.+..+..|.+.+.+++|+++|.++||+|..|| ||++.+.+++....++....+    ..+|++++.+++++. .++|.
T Consensus       164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH  243 (391)
T KOG2110|consen  164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVH  243 (391)
T ss_pred             eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence            999999999999999999999999999999997 689998888776666543322    234455555554443 35666


Q ss_pred             EEECc
Q 020021          186 MFDAR  190 (332)
Q Consensus       186 vwd~~  190 (332)
                      +|.+.
T Consensus       244 iFKL~  248 (391)
T KOG2110|consen  244 IFKLE  248 (391)
T ss_pred             EEEec
Confidence            66554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.8e-13  Score=123.50  Aligned_cols=267  Identities=19%  Similarity=0.270  Sum_probs=183.0

Q ss_pred             HHhcccceeEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeE----------------------------
Q 020021           20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLK----------------------------   70 (332)
Q Consensus        20 ~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~~~~~~----------------------------   70 (332)
                      .....++.+.|. |...-+.|..+|||.|+ |||-+--.|++||+.+.....                            
T Consensus        38 ~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR  116 (703)
T KOG2321|consen   38 YRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDR  116 (703)
T ss_pred             HHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCc
Confidence            334566666664 66677889999999985 677788899999997644321                            


Q ss_pred             Eeeeccc-------ce----eEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEe
Q 020021           71 TINSKKY-------GV----DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISG  139 (332)
Q Consensus        71 ~~~~~~~-------~v----~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~  139 (332)
                      ++..|..       .|    ..++++.....++++++   ...|.-.+++.|..+.-+..-.+.+++|..++-..+|+.|
T Consensus       117 ~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gs---g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~G  193 (703)
T KOG2321|consen  117 TIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGS---GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACG  193 (703)
T ss_pred             eeeehhhcCeeeeeecCcCCccccccCCCccEEEeec---CcceEEEEccccccccccccccccceeeeecCccceEEec
Confidence            1111110       00    12223333333444432   3467778999999888888888999999999988899999


Q ss_pred             eCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC
Q 020021          140 SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (332)
Q Consensus       140 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  219 (332)
                      +.||.|.+||.+.......+......  .                         ..+     -......|+++.|+.||=
T Consensus       194 t~~g~VEfwDpR~ksrv~~l~~~~~v--~-------------------------s~p-----g~~~~~svTal~F~d~gL  241 (703)
T KOG2321|consen  194 TEDGVVEFWDPRDKSRVGTLDAASSV--N-------------------------SHP-----GGDAAPSVTALKFRDDGL  241 (703)
T ss_pred             ccCceEEEecchhhhhheeeeccccc--C-------------------------CCc-----cccccCcceEEEecCCce
Confidence            99999999999876655444321110  0                         000     001123688999999999


Q ss_pred             EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC--CCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCc
Q 020021          220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE--GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP  297 (332)
Q Consensus       220 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd--g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~  297 (332)
                      .+++|+.+|.+.|+|++..+++.....  ...-++..+.|-+.  +..++|. ....++|||-.+|+....+-.- ..++
T Consensus       242 ~~aVGts~G~v~iyDLRa~~pl~~kdh--~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt-~~lN  317 (703)
T KOG2321|consen  242 HVAVGTSTGSVLIYDLRASKPLLVKDH--GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT-SDLN  317 (703)
T ss_pred             eEEeeccCCcEEEEEcccCCceeeccc--CCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc-CCcC
Confidence            999999999999999998877654331  22346667788665  4566665 3468999999999987766443 3589


Q ss_pred             eEEeCCCeeEEEeccce---EEEecccccccc
Q 020021          298 VIKWTPGSLMFVTGSSE---LSFWIPDLSKLG  326 (332)
Q Consensus       298 ~l~~sp~~~~l~t~~~d---~~~w~~~~~~~~  326 (332)
                      .+++-|++.++.+|-..   ..++.|++..-+
T Consensus       318 D~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaP  349 (703)
T KOG2321|consen  318 DFCFVPGSGMFFTANESSKMHTYYIPSLGPAP  349 (703)
T ss_pred             ceeeecCCceEEEecCCCcceeEEccccCCCc
Confidence            99999998888777554   666777775433

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.60  E-value=3.5e-14  Score=127.09  Aligned_cols=189  Identities=17%  Similarity=0.232  Sum_probs=143.7

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      ++.++.+...+|.+.|.+-.|+|||.-|+|+|.||.|+||.- +|-...++.....+|.+++|.|+...++++..    +
T Consensus        92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g----~  166 (737)
T KOG1524|consen   92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG----G  166 (737)
T ss_pred             ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC----C
Confidence            567788889999999999999999999999999999999984 45555555566678999999999999998863    3


Q ss_pred             eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEEEEE
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA  179 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  179 (332)
                      .+.+-.++-+.-+-..+.|.+-|.+++|++..+.++||+.|-..++||-.. ..+..-..+.  ...+++.|+ ..++++
T Consensus       167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd-~~~~v~  244 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPE-KDYLLW  244 (737)
T ss_pred             eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccceeeeeeccc-cceeee
Confidence            466666665555666789999999999999999999999999999999643 3222222222  234555565 556666


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i  232 (332)
                      +-++.|+=.               .....+..+++|+||+.+++|+..|.+.+
T Consensus       245 S~nt~R~~~---------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  245 SYNTARFSS---------------PRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeeeecC---------------CCccceEEEEEcCCCceeeccccCceEEE
Confidence            555555211               12246778999999999999999998655

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.1e-12  Score=122.56  Aligned_cols=226  Identities=11%  Similarity=0.055  Sum_probs=147.9

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~---D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      ...+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+...+....|+|+++.+++.....-..
T Consensus       192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  270 (435)
T PRK05137        192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT  270 (435)
T ss_pred             CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence            344567788899999999999999888764   468999999888653 3444444556778999999887654322245


Q ss_pred             eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC-CC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  178 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      .|.++|+.+++. ..+..+........|+|||+.++..+. +|  .|.+||+..+......                   
T Consensus       271 ~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt-------------------  330 (435)
T PRK05137        271 DIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS-------------------  330 (435)
T ss_pred             eEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee-------------------
Confidence            678889888765 446666666778899999998887663 33  3555555433211100                   


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC---CeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~  255 (332)
                                             .  .........+||||+.++....+   ..|.+||+..+.. ..+..    ...+.
T Consensus       331 -----------------------~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~----~~~~~  380 (435)
T PRK05137        331 -----------------------F--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS----GFLVE  380 (435)
T ss_pred             -----------------------c--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC----CCCCC
Confidence                                   0  00123346799999998876543   3688889765443 22221    11244


Q ss_pred             EEEECCCCCEEEEEcCC------CcEEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021          256 EASFSPEGMFVISGSGD------GSVYAWSVRSGKEVASWMSFDTEPPVIKWTP  303 (332)
Q Consensus       256 ~v~~spdg~~l~sgs~D------g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp  303 (332)
                      ...|+|||++|+..+.+      ..+++.|+..++ ...+. .+..+...+|+|
T Consensus       381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~-~~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN-EREVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc-eEEcc-CCCCccCcccCC
Confidence            57899999998776543      258888886544 34443 244466677877

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=1.7e-13  Score=124.10  Aligned_cols=252  Identities=14%  Similarity=0.208  Sum_probs=175.6

Q ss_pred             eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEE
Q 020021           68 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVL  146 (332)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~  146 (332)
                      |-..+.+|...|.+++..+.|..+++|+.   |+++|+|.+.++.++++++ -.+.|.+++|+|.++ .++.+..+..+.
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsd---DGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~  467 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSD---DGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVL  467 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCC---CCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceE
Confidence            33457889999999999999999998875   8899999999999998776 456899999999765 344444444455


Q ss_pred             EEeCCCceEE--------------------------------------EEEEec-CceeEEEcCCCeEEEEEeC----CE
Q 020021          147 LWDQRAEKCQ--------------------------------------GLLRVQ-GRPAAAYDDQGLVFAVAFG----GY  183 (332)
Q Consensus       147 iWd~~~~~~~--------------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~----~~  183 (332)
                      +-+..-+..+                                      .+++.. ......++..|.++++...    ..
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS  547 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence            5443211000                                      011110 1123345556666665431    45


Q ss_pred             EEEEECccCCC-CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          184 IRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       184 i~vwd~~~~~~-~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      |-|.++..... .+|.     .....+..+.|.|...++++++. ..|+|||+...+++..+.   .....+..++.+|.
T Consensus       548 VliHQLSK~~sQ~PF~-----kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~---tg~kwiS~msihp~  618 (733)
T KOG0650|consen  548 VLIHQLSKRKSQSPFR-----KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL---TGSKWISSMSIHPN  618 (733)
T ss_pred             EEEEecccccccCchh-----hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh---cCCeeeeeeeecCC
Confidence            66776653221 1111     11245788999999998888765 489999998876665543   23456777899999


Q ss_pred             CCEEEEEcCCCcEEEEECCCC-ceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEe----------ccccccccccc
Q 020021          263 GMFVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW----------IPDLSKLGAYV  329 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w----------~~~~~~~~~~~  329 (332)
                      |..|+.|+.|+.+..+|+.-. +..++++.|...+..|+||+.--+|++|+.|  +.++          +|-+-.|..+.
T Consensus       619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~  698 (733)
T KOG0650|consen  619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR  698 (733)
T ss_pred             CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence            999999999999999999643 4577889999999999999999999999987  3333          34455566666


Q ss_pred             ccC
Q 020021          330 GRK  332 (332)
Q Consensus       330 ~~~  332 (332)
                      ||+
T Consensus       699 gH~  701 (733)
T KOG0650|consen  699 GHE  701 (733)
T ss_pred             Cce
Confidence            663

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=8.8e-14  Score=113.31  Aligned_cols=212  Identities=16%  Similarity=0.219  Sum_probs=142.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEE
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR  115 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~  115 (332)
                      .|++-+++|.+++|+.|+.+|+|-+..++....     +.       + -+                      +....+.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s-----~s-------a-~~----------------------~gk~~iv   56 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS-----GS-------A-EP----------------------PGKLKIV   56 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc-----cc-------c-CC----------------------CCCccee
Confidence            355667899999999999999999887653210     00       0 00                      0112234


Q ss_pred             EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCC
Q 020021          116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG  195 (332)
Q Consensus       116 ~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~  195 (332)
                      ..++|..+|..+.|+  .++|++|+. |.|+-|..+....-                        .+.=++|.+...   
T Consensus        57 ~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es------------------------~~~K~lwe~~~P---  106 (325)
T KOG0649|consen   57 PEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEES------------------------LATKRLWEVKIP---  106 (325)
T ss_pred             eccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhh------------------------ccchhhhhhcCc---
Confidence            457899999999998  356777655 99999987543210                        011133433211   


Q ss_pred             CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcE
Q 020021          196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  275 (332)
Q Consensus       196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i  275 (332)
                       ...-  .....+++++-..|....++.++.|+.++-||+.+|+..++++   +|...+.++.--..+..++||++||++
T Consensus       107 -~~~~--~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R~~~~qilsG~EDGtv  180 (325)
T KOG0649|consen  107 -MQVD--AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR---GHTDYVHSVVGRNANGQILSGAEDGTV  180 (325)
T ss_pred             -cccC--cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc---CCcceeeeeeecccCcceeecCCCccE
Confidence             1110  1123468888898877777777799999999999999999888   566777777774556678899999999


Q ss_pred             EEEECCCCceEEEecCC---------C-CCCceEEeCCCeeEEEecc-ceEEEecc
Q 020021          276 YAWSVRSGKEVASWMSF---------D-TEPPVIKWTPGSLMFVTGS-SELSFWIP  320 (332)
Q Consensus       276 ~vWd~~~~~~~~~~~~~---------~-~~v~~l~~sp~~~~l~t~~-~d~~~w~~  320 (332)
                      ||||.++++++..+-..         . ..|-+++  -+...++.|+ ..+.+|..
T Consensus       181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhL  234 (325)
T KOG0649|consen  181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHL  234 (325)
T ss_pred             EEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEec
Confidence            99999999988765322         1 2233444  3444666654 45899964

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=2.1e-12  Score=120.20  Aligned_cols=221  Identities=11%  Similarity=0.092  Sum_probs=139.3

Q ss_pred             CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCe
Q 020021           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  135 (332)
Q Consensus        56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~  135 (332)
                      ..|.+||.+..+. +.+..+...+...+|+|+++.+++.+..+-+..+.+||+.+++... +......+....|+|||+.
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence            3788889875544 3344455567889999999999876543335679999998876432 2222333456899999998


Q ss_pred             EEEe-eCCC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeE
Q 020021          136 FISG-SLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV  212 (332)
Q Consensus       136 l~s~-s~Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v  212 (332)
                      |+.. +.+|  .|.+||+.++......                                            .....+...
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt--------------------------------------------~~~~~~~~~  292 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVT--------------------------------------------DGRSNNTEP  292 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEcc--------------------------------------------CCCCCcCce
Confidence            8754 4455  4777777654321110                                            001123457


Q ss_pred             EEcCCCCEEEEEcCC-C--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECCCCceE
Q 020021          213 KFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKEV  286 (332)
Q Consensus       213 ~~s~dg~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~~~~~~  286 (332)
                      .|||||+.++..+.+ +  .|+.+|+.+++.. .+..   .........|||||++|+..+.+   ..|++||+.+++. 
T Consensus       293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-  367 (429)
T PRK03629        293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-  367 (429)
T ss_pred             EECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-
Confidence            899999988777654 3  4566677666543 2221   11223457899999999887544   3688999987763 


Q ss_pred             EEecCCCCCCceEEeCCCeeEEEeccce-----EEEecccccccccc
Q 020021          287 ASWMSFDTEPPVIKWTPGSLMFVTGSSE-----LSFWIPDLSKLGAY  328 (332)
Q Consensus       287 ~~~~~~~~~v~~l~~sp~~~~l~t~~~d-----~~~w~~~~~~~~~~  328 (332)
                      ..+... ......+|+|||++++.++.+     +.+++.+...+..+
T Consensus       368 ~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l  413 (429)
T PRK03629        368 QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL  413 (429)
T ss_pred             EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEEC
Confidence            333321 223467899999998887654     44455554444433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.57  E-value=2e-14  Score=130.90  Aligned_cols=199  Identities=18%  Similarity=0.311  Sum_probs=140.3

Q ss_pred             CcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-------eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           35 GRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        35 ~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      ..|+.+.|+| |...||.++.|+.|+||.+..+       +.-..+..|...|..+.|+|-...++..+  .+|.+|++|
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a--syd~Ti~lW  705 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA--SYDSTIELW  705 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh--hccceeeee
Confidence            4588889987 5678999999999999998643       22345678888899999999776655543  358999999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC----c-eeEEEc-CCCeEEEEEe
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----R-PAAAYD-DQGLVFAVAF  180 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~----~-~~~~~~-~~~~~~~~~~  180 (332)
                      |+.+++....|.||++.|.+++|+|+|++++|.+.||+|++++.+++..- ....++    + ....+. ++..++.+++
T Consensus       706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p-v~Eg~gpvgtRgARi~wacdgr~viv~Gf  784 (1012)
T KOG1445|consen  706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP-VYEGKGPVGTRGARILWACDGRIVIVVGF  784 (1012)
T ss_pred             ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc-cccCCCCccCcceeEEEEecCcEEEEecc
Confidence            99999988899999999999999999999999999999999998765321 111111    1 112233 3344555666


Q ss_pred             C----CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccC
Q 020021          181 G----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFR  237 (332)
Q Consensus       181 ~----~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~  237 (332)
                      |    ..|.+||.......++....+.... ....=.+.+|. .++++|-.|..|.+|.+.-
T Consensus       785 dk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  785 DKSSERQVQMYDAQTLDLRPLYTQVLDVAP-SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             cccchhhhhhhhhhhccCCcceeeeecccC-ccccccccCCCceEEEecCCCceEEEEEecC
Confidence            5    4788888776554444333322111 11112345554 4567788899999998643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=3.1e-12  Score=119.59  Aligned_cols=205  Identities=12%  Similarity=0.095  Sum_probs=136.3

Q ss_pred             CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCe
Q 020021           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  135 (332)
Q Consensus        56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~  135 (332)
                      ..|.+||... ...+.+..+...+...+|+|+++.+++.+..+-+..|.+||+.+++. ..+..+.+.+....|+|||+.
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCE
Confidence            4788888754 44455666666788899999999998876433357899999988765 345566677788999999997


Q ss_pred             EE-EeeCCCc--EEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeE
Q 020021          136 FI-SGSLDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV  212 (332)
Q Consensus       136 l~-s~s~Dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v  212 (332)
                      |+ +.+.++.  |.+||+.++......                                            .+.......
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt--------------------------------------------~~~~~~~~~  295 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRLT--------------------------------------------DSPAIDTSP  295 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEcc--------------------------------------------CCCCccCce
Confidence            65 6666665  555566554321100                                            001122346


Q ss_pred             EEcCCCCEEEEEcC-CC--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECCCCceE
Q 020021          213 KFSNDGRLMLLTTM-EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKEV  286 (332)
Q Consensus       213 ~~s~dg~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~~~~~~  286 (332)
                      .|||||+.++..+. +|  .|+++|+..++... +..   .........|||||++|+..+.+   ..|.+||+..+. .
T Consensus       296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~  370 (435)
T PRK05137        296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISF---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-E  370 (435)
T ss_pred             eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eec---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-e
Confidence            89999998887654 33  68888987665432 221   12233456899999999887654   368888985543 3


Q ss_pred             EEecCCCCCCceEEeCCCeeEEEecc
Q 020021          287 ASWMSFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       287 ~~~~~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      ..+. ....+..++|+|||++++..+
T Consensus       371 ~~lt-~~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        371 RILT-SGFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             Eecc-CCCCCCCCeECCCCCEEEEEE
Confidence            3332 233467789999998876643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.56  E-value=4e-12  Score=115.36  Aligned_cols=279  Identities=13%  Similarity=0.146  Sum_probs=166.5

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~  102 (332)
                      +.+..+.+.........+.|+|||+++..++.|+.|.++|+.+++.+.++..... ...++++++++.++.+..  .++.
T Consensus        25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~--~~~~  101 (369)
T PF02239_consen   25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANY--EPGT  101 (369)
T ss_dssp             T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEE--ETTE
T ss_pred             CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEec--CCCc
Confidence            3566677776555555688999999999999999999999999999999876553 466899999999887753  4789


Q ss_pred             eEEEEccCCceEEEeecc-------cccEEEEEecCCCCeEEEeeCC-CcEEEEeCCCceEEE--EEEecC-ceeEEEcC
Q 020021          103 LRLLSLHDNKYLRYFKGH-------HDRVVSLSLCSSKDCFISGSLD-RTVLLWDQRAEKCQG--LLRVQG-RPAAAYDD  171 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~~h-------~~~V~~v~~~~~~~~l~s~s~D-g~i~iWd~~~~~~~~--~~~~~~-~~~~~~~~  171 (332)
                      +.++|.++.+.++.+...       ..++.++..++....++..-.| +.|-+-|....+...  .+.... .....+++
T Consensus       102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp  181 (369)
T PF02239_consen  102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP  181 (369)
T ss_dssp             EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred             eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc
Confidence            999999999988876532       3467888888888867666665 566666766544332  222221 23467778


Q ss_pred             CCeEEEEEe--CCEEEEEECccCCCCCeeEEEecCC--CCCcee---------EEEcCCCCEEEEEcCCCeEEEEEccCC
Q 020021          172 QGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGD--ISDANV---------VKFSNDGRLMLLTTMEGHIHVLDSFRG  238 (332)
Q Consensus       172 ~~~~~~~~~--~~~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~---------v~~s~dg~~l~~~~~dg~i~i~d~~~~  238 (332)
                      +++++.++.  .+.|.++|.+....  ......+..  ......         -..+..+...++.-....+.+||....
T Consensus       182 dgry~~va~~~sn~i~viD~~~~k~--v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w  259 (369)
T PF02239_consen  182 DGRYFLVAANGSNKIAVIDTKTGKL--VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW  259 (369)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTTEE--EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred             ccceeeecccccceeEEEeeccceE--EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC
Confidence            887666653  47899999765321  111111100  001000         111223333323333345667888888


Q ss_pred             eEeEEeeecCCCCCcceEEEECCCCCEEEEE----cCCCcEEEEECCCCceEEEecCCC-CCCceEEeCCCeeEEEe
Q 020021          239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISG----SGDGSVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVT  310 (332)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg----s~Dg~i~vWd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~t  310 (332)
                      +.+.++....   .. .-+.-+||++++...    ...++|.|+|.++.+.+.++.... ..+.++.|++||+.+-.
T Consensus       260 kvv~~I~~~G---~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~v  332 (369)
T PF02239_consen  260 KVVKTIPTQG---GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWV  332 (369)
T ss_dssp             SEEEEEE-SS---SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEE
T ss_pred             eEEEEEECCC---Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEE
Confidence            8888877432   22 456779999999998    445899999999987777764332 24789999999976533

...

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.56  E-value=7.9e-13  Score=111.68  Aligned_cols=240  Identities=14%  Similarity=0.169  Sum_probs=175.8

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC---eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      .+|.---.+|+|-+|++|+..+|.+-....|.||.....   +..++++.|...|+.++|.|..+.|+.++.   |..-.
T Consensus         4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~---drnay   80 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH---DRNAY   80 (361)
T ss_pred             EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC---CCCcc
Confidence            445556689999999999999999999999999987644   467899999999999999999999999865   88899


Q ss_pred             EEEc-cCCc--eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021          105 LLSL-HDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  181 (332)
Q Consensus       105 v~d~-~~~~--~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (332)
                      ||.. ..++  +.-.+..|+..++++.|+|..+.||.||.-+.|.+|=++.+.--                         
T Consensus        81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-------------------------  135 (361)
T KOG1523|consen   81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-------------------------  135 (361)
T ss_pred             ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-------------------------
Confidence            9988 4444  34456779999999999999999999999999999876543211                         


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC------------------CeEeEE
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR------------------GTLLST  243 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~------------------~~~~~~  243 (332)
                           |-.+..++         ...+.|.++.+.|.+-++++|+.|+..++|...-                  |+++.+
T Consensus       136 -----WVsKhikk---------PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E  201 (361)
T KOG1523|consen  136 -----WVSKHIKK---------PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE  201 (361)
T ss_pred             -----ehhhhhCC---------ccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence                 00000000         1124577888888888888888888888876421                  122222


Q ss_pred             eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc-eEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      +.   ...+.+..+.|+|+|..|+=.+.|+++.+=|-.... .+.+...-.-+..++.|-.+. .++.++.
T Consensus       202 ~~---~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~  268 (361)
T KOG1523|consen  202 AS---SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGY  268 (361)
T ss_pred             hc---cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCC
Confidence            21   234677889999999999999999999999986654 344433333456667775443 3334433

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=1.5e-12  Score=112.66  Aligned_cols=289  Identities=14%  Similarity=0.135  Sum_probs=184.9

Q ss_pred             CCCCccccccceeE--ecHHHHhcccceeEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCeeeEEe-----
Q 020021            2 VGSQSEREDKVSLE--LSEEILQSMEVGMSFRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTAATCLKTI-----   72 (332)
Q Consensus         2 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg--~~l~tgs~D~tv~iwd~~~~~~~~~~-----   72 (332)
                      ||--++..+.+-++  .+-++-.+.........-...|+++.|..++  ..+...+.|..+.+.+.....+...+     
T Consensus        21 Vg~~tG~lkgi~~~~~t~~~~~~nls~~~s~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~  100 (412)
T KOG3881|consen   21 VGTHTGQLKGIYLKRNTVISEDENLSALNSGVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKT  100 (412)
T ss_pred             EeccccccccceEeeccccccchhhhhhhcccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccc
Confidence            34444444444332  2222233344444444455678888886544  56777778888888888766654433     


Q ss_pred             -eecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc----eEEEeecccccEEEEEecC-CCCeEEEeeCC--Cc
Q 020021           73 -NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCS-SKDCFISGSLD--RT  144 (332)
Q Consensus        73 -~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~----~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~D--g~  144 (332)
                       ......|..  .......++++..   ++.+.+|..+.+-    .+..+..+ ..+..+.-++ +...+++||..  ..
T Consensus       101 ~~l~~~~I~g--l~~~dg~Litc~~---sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~  174 (412)
T KOG3881|consen  101 VSLGTKSIKG--LKLADGTLITCVS---SGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE  174 (412)
T ss_pred             cccccccccc--hhhcCCEEEEEec---CCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence             122222322  2233345555544   5789999987332    23333333 3344555555 44577779998  89


Q ss_pred             EEEEeCCCceEEEEEEecCc---------e----eEEEcC---CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCC
Q 020021          145 VLLWDQRAEKCQGLLRVQGR---------P----AAAYDD---QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD  208 (332)
Q Consensus       145 i~iWd~~~~~~~~~~~~~~~---------~----~~~~~~---~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~  208 (332)
                      +++||+...+.+  +.....         +    ...|-+   ...++++..-+++|+||.+..++ |...+...  ..+
T Consensus       175 lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-PV~~fd~~--E~~  249 (412)
T KOG3881|consen  175 LKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-PVAQFDFL--ENP  249 (412)
T ss_pred             eeeeecccceee--eeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-ceeEeccc--cCc
Confidence            999998776433  322111         1    122323   33555566679999999996544 34333332  357


Q ss_pred             ceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE-eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 020021          209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA  287 (332)
Q Consensus       209 v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~  287 (332)
                      ++++..-|+|..+.++..-|.+..||.++++++.. +.   ...+.+..+-.+|.++++|++|.|+.+||+|+.+.+.++
T Consensus       250 is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k---g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  250 ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK---GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             ceeeeecCCCcEEEEecccchhheecccCceeeccccC---CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence            88899999999999999999999999999988765 33   345677889999999999999999999999999977665


Q ss_pred             EecCCCCCCceEEeCCCe
Q 020021          288 SWMSFDTEPPVIKWTPGS  305 (332)
Q Consensus       288 ~~~~~~~~v~~l~~sp~~  305 (332)
                      .. ...+.+++|-+.++-
T Consensus       327 kv-YvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  327 KV-YVKSRLTFILLRDDV  343 (412)
T ss_pred             hh-hhhccccEEEecCCc
Confidence            43 234556777776653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.55  E-value=1.3e-13  Score=123.46  Aligned_cols=165  Identities=20%  Similarity=0.336  Sum_probs=113.7

Q ss_pred             cccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeE
Q 020021          121 HDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI  199 (332)
Q Consensus       121 ~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~  199 (332)
                      +..|+++.|-| +...|+.+-++|.+.++|..-..      ....+.....+++..++..      .|.-.... .+...
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~t~p~~~~~k~~~~f~i~------t~ksk~~r-NPv~~  285 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GATAPSYQALKDGDQFAIL------TSKSKKTR-NPVAR  285 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cCCCCcccccCCCCeeEEe------eeeccccC-Cccce
Confidence            36899999988 44577777889999999862110      0111112222222222222      11111000 12222


Q ss_pred             EEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEE
Q 020021          200 FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS  279 (332)
Q Consensus       200 ~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd  279 (332)
                      +..  -...++..+|||||+++|+-+.||.++|||..+.+++..++-..   ....+|+|||||+||++|++|--|.||.
T Consensus       286 w~~--~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwS  360 (636)
T KOG2394|consen  286 WHI--GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWS  360 (636)
T ss_pred             eEe--ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEE
Confidence            221  12368889999999999999999999999998877665443221   3456899999999999999999999999


Q ss_pred             CCCCceEEEecCCCCCCceEEeCC
Q 020021          280 VRSGKEVASWMSFDTEPPVIKWTP  303 (332)
Q Consensus       280 ~~~~~~~~~~~~~~~~v~~l~~sp  303 (332)
                      +..++.+.--.+|..+|+.|+|.|
T Consensus       361 f~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  361 FEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccceEEEeccccccceeeEeecc
Confidence            999999988899999999999983

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.54  E-value=1.8e-13  Score=112.75  Aligned_cols=251  Identities=14%  Similarity=0.182  Sum_probs=148.6

Q ss_pred             hcccceeEec-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee--EEeeecccceeEEEEccCCCE---EEEec
Q 020021           22 QSMEVGMSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTT---VIYSS   95 (332)
Q Consensus        22 ~~~~~~~~l~-~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~---~~~~s   95 (332)
                      .+.+..-.++ .|...|+.+.--|+ ..|.|-+.|..+.+|++..+.-+  +.+....-..-..++.+.++.   ++..-
T Consensus        43 qt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp  121 (323)
T KOG0322|consen   43 QTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYP  121 (323)
T ss_pred             ecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecC
Confidence            3344444566 57788999988886 68889999999999999764322  222211111111222222221   11111


Q ss_pred             CCCCCceeEEEEccCCceEEEe----ecccccEEEEEecC-CCC--eEEEeeCCCcEEEEeCCCceEEEEEEecCc----
Q 020021           96 KNGWDESLRLLSLHDNKYLRYF----KGHHDRVVSLSLCS-SKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGR----  164 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~----~~h~~~V~~v~~~~-~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~----  164 (332)
                      ..|.|. +.+-|......+...    .+..+.+++..+.. .++  .++.|-.+|.+.+||++++...  ++.+..    
T Consensus       122 ~rgsde-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~--~~~~~~~kv~  198 (323)
T KOG0322|consen  122 SRGSDE-THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI--IQLPQSSKVE  198 (323)
T ss_pred             Ccccch-hhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee--eccccccccc
Confidence            122222 222232222222222    23456677766432 333  5677788999999999887332  222211    


Q ss_pred             --------ee--EEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEE-EecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021          165 --------PA--AAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (332)
Q Consensus       165 --------~~--~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~-~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i  232 (332)
                              +.  ..+.+ ...=+.++.+..+..|.+.... +.+.+- ...-....++.+.+=||++++++++=|++|++
T Consensus       199 ~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~-gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRV  277 (323)
T KOG0322|consen  199 SPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST-GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRV  277 (323)
T ss_pred             cchhhccCcceeeeechhhcCCcCCCccccceeeeecccc-CcccccceEEecCCCccceEEccCCcEEeecccCCcEEE
Confidence                    11  11111 0011122234567777764321 111110 00011246778899999999999999999999


Q ss_pred             EEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          233 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       233 ~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      |..++...+..+.   .|...+.+++|+||...+|+||.|+.|.+|++
T Consensus       278 yswrtl~pLAVLk---yHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  278 YSWRTLNPLAVLK---YHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEeccCCchhhhh---hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999888776   45678899999999999999999999999986

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.54  E-value=1.2e-12  Score=109.29  Aligned_cols=232  Identities=12%  Similarity=0.109  Sum_probs=151.4

Q ss_pred             ccCCCcEEEEEECCCC-----CEEEEEeCCCcEEEEEcCC--Cee--eEEee-----ecccceeEEEEccCCCEEEEecC
Q 020021           31 RDYNGRISSMDFHKSS-----SYLVTASDDESIRLYDVTA--ATC--LKTIN-----SKKYGVDLVCFTSHPTTVIYSSK   96 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg-----~~l~tgs~D~tv~iwd~~~--~~~--~~~~~-----~~~~~v~~~~~~~~~~~~~~~s~   96 (332)
                      -.|.-+++.+-|.|+.     .+|||.+  -.+|+|.+..  .+.  ...+.     .+..+.++..|..-...++..+ 
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS-  169 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS-  169 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee-
Confidence            4688999999999986     3566655  4699999873  211  11121     2233566666665444444333 


Q ss_pred             CCCCceeEEEEccCCce---EEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEEe--cC--ceeEE
Q 020021           97 NGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRV--QG--RPAAA  168 (332)
Q Consensus        97 ~g~d~~v~v~d~~~~~~---~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~--~~~~~  168 (332)
                       +.|-++.+||++++..   ..-|-.|..+|..++|...+ +.|||+|.||.+|++|++.-.- .++..  +.  .+-..
T Consensus       170 -SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH-STIIYE~p~~~~pLlR  247 (364)
T KOG0290|consen  170 -SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH-STIIYEDPSPSTPLLR  247 (364)
T ss_pred             -cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc-ceEEecCCCCCCccee
Confidence             3489999999998743   33467899999999999855 4899999999999999986432 22211  11  11111


Q ss_pred             E--cC-CCeEE-EEEeC-CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeE--
Q 020021          169 Y--DD-QGLVF-AVAFG-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTL--  240 (332)
Q Consensus       169 ~--~~-~~~~~-~~~~~-~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~--  240 (332)
                      .  .+ +..++ +.+.| ..|.+.|+|...   ..+..+.+|.+.|+.+++.|.. ..+++++.|-.+-+||+...-.  
T Consensus       248 LswnkqDpnymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~  324 (364)
T KOG0290|consen  248 LSWNKQDPNYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN  324 (364)
T ss_pred             eccCcCCchHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence            1  11 22233 23333 689999998743   2345677899999999999965 6788999999999999865322  


Q ss_pred             eEEeeecCCCCCcceEEEECC-CCCEEEEEc
Q 020021          241 LSTYNVKPVSRNSTLEASFSP-EGMFVISGS  270 (332)
Q Consensus       241 ~~~~~~~~~~~~~~~~v~~sp-dg~~l~sgs  270 (332)
                      +..-.........+..+.|+| ....++.+.
T Consensus       325 ~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  325 GEDPILAYTAGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             CCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence            111011112345677888985 566777664

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=3.3e-12  Score=118.92  Aligned_cols=206  Identities=12%  Similarity=0.126  Sum_probs=131.5

Q ss_pred             CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCe
Q 020021           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  135 (332)
Q Consensus        56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~  135 (332)
                      ..|.+||.. +...+.+..+...+...+|+|+++.+++.+...-...+.+||+.+++... +......+....|+|||+.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            456777764 44444555556677888999999999887643334579999998886543 3334455668899999998


Q ss_pred             EE-EeeCCCcEEEEeCC--CceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeE
Q 020021          136 FI-SGSLDRTVLLWDQR--AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV  212 (332)
Q Consensus       136 l~-s~s~Dg~i~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v  212 (332)
                      |+ +.+.|+...+|.+.  .+... .                                           +..+.......
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~~~-~-------------------------------------------lt~~~~~~~~~  289 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSGLR-R-------------------------------------------LTQSSGIDTEP  289 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCCcE-E-------------------------------------------CCCCCCCCcCe
Confidence            76 66788887777542  11100 0                                           00011122346


Q ss_pred             EEcCCCCEEEEEcC-CCeEEEE--EccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC---cEEEEECCCCceE
Q 020021          213 KFSNDGRLMLLTTM-EGHIHVL--DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEV  286 (332)
Q Consensus       213 ~~s~dg~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg---~i~vWd~~~~~~~  286 (332)
                      .|||||+.++..+. +|...+|  |...+... .+...   .......+|||||++|+..+.++   .|++||+.+++. 
T Consensus       290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~---g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-  364 (427)
T PRK02889        290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT---GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-  364 (427)
T ss_pred             EEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC---CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-
Confidence            79999998876554 4555555  44444432 22111   12223568999999999877655   699999988764 


Q ss_pred             EEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          287 ASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       287 ~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      ..+.. .......+|+||+++++..+.
T Consensus       365 ~~lt~-~~~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        365 TALTD-TTRDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             EEccC-CCCccCceECCCCCEEEEEEe
Confidence            33332 233467899999998877654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.53  E-value=4.6e-13  Score=120.04  Aligned_cols=256  Identities=13%  Similarity=0.143  Sum_probs=155.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccce-eEEEEc-------cCCCEEEEecCCCCCcee
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGV-DLVCFT-------SHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v-~~~~~~-------~~~~~~~~~s~~g~d~~v  103 (332)
                      .|...|-|+.|+.....+.+++++..++-||+.+.+. +.+...+.-+ +.....       .....++.+++   |+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~---DGkf   87 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSN---DGRF   87 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCCccccccccccCCCCCcceEEEEcC---CceE
Confidence            3555566888887776776666666666666654322 1111111000 000000       01123444443   5566


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE--ecCceeEEEcCCCeEEEEEeC
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAFG  181 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  181 (332)
                      .+.+- +++.-+....|.+.|.+-.|+|||.-|+|++.||.|++|. +++-...++.  ....-++.+.|+..-+.-..+
T Consensus        88 ~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g  165 (737)
T KOG1524|consen   88 VILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG  165 (737)
T ss_pred             EEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence            65542 3444556778999999999999999999999999999997 4443322221  112234556665433222333


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp  261 (332)
                      +.+.+=.+..    ......-..|..-+.++.+++...++++|+.|=.-++||.. |..+.+-   ..|..++++++|.|
T Consensus       166 ~h~~IKpL~~----n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S---~~~ey~ITSva~np  237 (737)
T KOG1524|consen  166 GHISIKPLAA----NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTS---AAEEYAITSVAFNP  237 (737)
T ss_pred             CeEEEeeccc----ccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccC---Chhccceeeeeecc
Confidence            4444333221    11122233455668889999999999999999999999976 4444322   24667899999999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021          262 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       262 dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      | ..++.+|. .++|         ..  ....+.|..++|||||.+++.|.+.
T Consensus       238 d-~~~~v~S~-nt~R---------~~--~p~~GSifnlsWS~DGTQ~a~gt~~  277 (737)
T KOG1524|consen  238 E-KDYLLWSY-NTAR---------FS--SPRVGSIFNLSWSADGTQATCGTST  277 (737)
T ss_pred             c-cceeeeee-eeee---------ec--CCCccceEEEEEcCCCceeeccccC
Confidence            9 55555543 3343         11  1233568889999999999988775

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=1.5e-12  Score=124.93  Aligned_cols=242  Identities=15%  Similarity=0.248  Sum_probs=158.2

Q ss_pred             eeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeeccc---ccEEEEEecC--CCCeEEEeeCCCcEEEEeCCCc
Q 020021           79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH---DRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAE  153 (332)
Q Consensus        79 v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~---~~V~~v~~~~--~~~~l~s~s~Dg~i~iWd~~~~  153 (332)
                      ...+.|++....++++..   ...|++||.+.++.+..|..+.   ..|+.+.+-.  |...+++|+.||.||||+--..
T Consensus      1067 pk~~~~hpf~p~i~~ad~---r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADD---RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CceeeecCCCceeEEcCC---cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            345667777777776532   4679999999988877776543   4688887654  4558999999999999973222


Q ss_pred             -----eEEEEEE-ec------CceeE--EEc-CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEc-CC
Q 020021          154 -----KCQGLLR-VQ------GRPAA--AYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS-ND  217 (332)
Q Consensus       154 -----~~~~~~~-~~------~~~~~--~~~-~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s-~d  217 (332)
                           +.+.-.. +.      .....  .+. ..|.++++|.-..||+||......  ..-... +....++++.-+ +.
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--~~diP~-~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--VADIPY-GSSTLVTALSADLVH 1220 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee--Eeeccc-CCCccceeecccccC
Confidence                 2221111 00      01112  222 245555555568999999875321  111111 111233443332 34


Q ss_pred             CCEEEEEcCCCeEEEEEccCCeE---eEEeeecCCCCCc--ceEEEECCCCC-EEEEEcCCCcEEEEECCCCceE--EEe
Q 020021          218 GRLMLLTTMEGHIHVLDSFRGTL---LSTYNVKPVSRNS--TLEASFSPEGM-FVISGSGDGSVYAWSVRSGKEV--ASW  289 (332)
Q Consensus       218 g~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~--~~~v~~spdg~-~l~sgs~Dg~i~vWd~~~~~~~--~~~  289 (332)
                      |.++++|..||.|++||.+....   +..++   .|...  |..+.+-+.|. .|++|+.||.|++||++.....  .+.
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R---~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYR---EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeec---ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee
Confidence            79999999999999999876543   23333   23333  77888888664 5999999999999999764222  222


Q ss_pred             cCC---CCCCceEEeCCCeeEEEeccc-eEEEeccccccccccc
Q 020021          290 MSF---DTEPPVIKWTPGSLMFVTGSS-ELSFWIPDLSKLGAYV  329 (332)
Q Consensus       290 ~~~---~~~v~~l~~sp~~~~l~t~~~-d~~~w~~~~~~~~~~~  329 (332)
                      ..|   .+..+++..|+....+++|+. .+++|+.+..+|+.++
T Consensus      1298 v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred             eeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc
Confidence            232   234899999999999999984 5999999988887764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.52  E-value=2.5e-12  Score=106.41  Aligned_cols=134  Identities=19%  Similarity=0.396  Sum_probs=94.3

Q ss_pred             eEEEEccC-CceEEEeec-ccccEEEEEecCCCCeEE--EeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021          103 LRLLSLHD-NKYLRYFKG-HHDRVVSLSLCSSKDCFI--SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  178 (332)
Q Consensus       103 v~v~d~~~-~~~~~~~~~-h~~~V~~v~~~~~~~~l~--s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      ..+|.+.. +.....+.- ..++|..++|+|+++.|+  +|..++.|.+||++.. .+..+                   
T Consensus        39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~-~i~~~-------------------   98 (194)
T PF08662_consen   39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK-KIFSF-------------------   98 (194)
T ss_pred             EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCccc-EeEee-------------------
Confidence            44554422 233444432 345799999999999864  4456789999998521 11110                   


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC---CCeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  255 (332)
                                                .....+.+.|||+|++++.++.   .|.+.+||..+.+.+...+     ...+.
T Consensus        99 --------------------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----~~~~t  147 (194)
T PF08662_consen   99 --------------------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-----HSDAT  147 (194)
T ss_pred             --------------------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-----cCcEE
Confidence                                      0124567899999999998864   4679999999888876654     23467


Q ss_pred             EEEECCCCCEEEEEcC------CCcEEEEECCCCceEEE
Q 020021          256 EASFSPEGMFVISGSG------DGSVYAWSVRSGKEVAS  288 (332)
Q Consensus       256 ~v~~spdg~~l~sgs~------Dg~i~vWd~~~~~~~~~  288 (332)
                      .++|||||+++++++.      |..++||+. .|+.+..
T Consensus       148 ~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~  185 (194)
T PF08662_consen  148 DVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYK  185 (194)
T ss_pred             EEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEe
Confidence            8999999999999975      788999998 4776654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.52  E-value=9.4e-13  Score=109.81  Aligned_cols=217  Identities=15%  Similarity=0.191  Sum_probs=148.8

Q ss_pred             CCceeEEEEccCCce---EEEeecccccEEEEEecC-CCCeEEEeeCC-------CcEEEEeCCCceEEEE---E----E
Q 020021           99 WDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCS-SKDCFISGSLD-------RTVLLWDQRAEKCQGL---L----R  160 (332)
Q Consensus        99 ~d~~v~v~d~~~~~~---~~~~~~h~~~V~~v~~~~-~~~~l~s~s~D-------g~i~iWd~~~~~~~~~---~----~  160 (332)
                      .|++|.+.++.....   -+.|..|.++|+.++-+| +.+.|+|+-.|       -.+-||.+..+.....   +    .
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            467777777655332   346778899999999999 55677777553       2367998754322110   1    1


Q ss_pred             e-----cCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEe--cCCCCCceeEEEcC--CCCEEEEEcCCCeEE
Q 020021          161 V-----QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV--GGDISDANVVKFSN--DGRLMLLTTMEGHIH  231 (332)
Q Consensus       161 ~-----~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~--~~~~~~v~~v~~s~--dg~~l~~~~~dg~i~  231 (332)
                      +     ....+..+.|++..+++-.+..|.+|++.....-.......  ....-...+-++||  ||..+++ ..|++++
T Consensus       118 Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~  196 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQ  196 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEE
Confidence            1     12356778888877777779999999987654311111110  01112344556777  6776554 5788999


Q ss_pred             EEEccCCeEeEEeeecCCCCCcceEEEECCCC-CEEEEEcCCCcEEEEECCCCc-eEEEecCCCCCCceEEeCCC-eeEE
Q 020021          232 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPG-SLMF  308 (332)
Q Consensus       232 i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~~-~~~~~~~~~~~v~~l~~sp~-~~~l  308 (332)
                      .||+++.+....++  ..|...+..+.|.|+- .+|+||++||.|+|||.++.+ .+.++..|...|+++.|+|- .+++
T Consensus       197 ~~D~RT~~~~~sI~--dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi  274 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIE--DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI  274 (370)
T ss_pred             EEEccchhhhcchh--hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence            99999766544443  2455678889999975 578899999999999997654 57888999999999999995 5677


Q ss_pred             Eeccce--EEEe
Q 020021          309 VTGSSE--LSFW  318 (332)
Q Consensus       309 ~t~~~d--~~~w  318 (332)
                      .++++|  +.+|
T Consensus       275 Ls~~SDs~V~Ls  286 (370)
T KOG1007|consen  275 LSGGSDSAVNLS  286 (370)
T ss_pred             EecCCCceeEEE
Confidence            888888  6666

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.52  E-value=2.2e-11  Score=102.99  Aligned_cols=183  Identities=13%  Similarity=0.223  Sum_probs=132.2

Q ss_pred             ccccceeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC-CCeeeEEeeecccceeEEEEcc
Q 020021            8 REDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTS   86 (332)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~-~~~~~~~~~~~~~~v~~~~~~~   86 (332)
                      +-+.-.|.+||+.+..--....   ...+|.+|.+.++  .|+ .-....|.+|... +.+.++.+.....+--.++..+
T Consensus        71 ky~pNkviIWDD~k~~~i~el~---f~~~I~~V~l~r~--riV-vvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~  144 (346)
T KOG2111|consen   71 KYPPNKVIIWDDLKERCIIELS---FNSEIKAVKLRRD--RIV-VVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCP  144 (346)
T ss_pred             CCCCceEEEEecccCcEEEEEE---eccceeeEEEcCC--eEE-EEecCeEEEEEcCCChhheeeeecccCCCceEeecC
Confidence            3445567888877644332222   4578999999864  454 3456789999987 5566677665443333556666


Q ss_pred             CCCEEEEecCCCCCceeEEEEccCCce--EEEeecccccEEEEEecCCCCeEEEeeCCCc-EEEEeCCCceEEEEEEecC
Q 020021           87 HPTTVIYSSKNGWDESLRLLSLHDNKY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRT-VLLWDQRAEKCQGLLRVQG  163 (332)
Q Consensus        87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~--~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~~~~~  163 (332)
                      .....+.+..+-.-++|++-|+...+.  ...+..|...|.+++.+.+|..+||+|..|| |||||..++..+..++.. 
T Consensus       145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-  223 (346)
T KOG2111|consen  145 TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-  223 (346)
T ss_pred             CCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-
Confidence            555544444433457899999877554  4788899999999999999999999999997 799999888766554321 


Q ss_pred             ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC
Q 020021          164 RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (332)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~  237 (332)
                                                              .+.+.+.+++|||++++++++++.|+++||.++.
T Consensus       224 ----------------------------------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  224 ----------------------------------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             ----------------------------------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence                                                    1234677889999999999999999999988764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.52  E-value=3.4e-12  Score=124.25  Aligned_cols=229  Identities=13%  Similarity=0.140  Sum_probs=142.7

Q ss_pred             ccceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCC-------CeeeEEeeecccceeEEEEccCCCEEEEec
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      ..++..|..|...|..++.+++. .+++|||.||+||+||...       ..+..++......+..+.+-+.+..++.++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            55777899999999999987655 9999999999999999852       233445554556788888888999998886


Q ss_pred             CCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC-CceEEEEEEecCceeEEEcCCC-
Q 020021           96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRVQGRPAAAYDDQG-  173 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~-  173 (332)
                      .   ||.|++.++...+..                   ++.++...     +=|.. .+.   ...+.....   .... 
T Consensus      1118 ~---DG~v~~~~id~~~~~-------------------~~~~~~~r-----i~n~~~~g~---vv~m~a~~~---~~~S~ 1164 (1431)
T KOG1240|consen 1118 K---DGSVRVLRIDHYNVS-------------------KRVATQVR-----IPNLKKDGV---VVSMHAFTA---IVQSH 1164 (1431)
T ss_pred             C---CCeEEEEEccccccc-------------------cceeeeee-----cccccCCCc---eEEeecccc---cccce
Confidence            5   788999887552110                   00111100     00000 000   000110000   0111 


Q ss_pred             eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021          174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (332)
Q Consensus       174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (332)
                      .++.+..-+.|..||+|.......  .......+-+++++.+|.+..++.|+..|.+.+||++-+.++..+...  +..+
T Consensus      1165 ~lvy~T~~~~iv~~D~r~~~~~w~--lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P--~~~~ 1240 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWR--LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP--ARAP 1240 (1431)
T ss_pred             eEEEEEeccceEEecchhhhhHHh--hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc--ccCC
Confidence            223333345666666664322111  111122356899999999999999999999999999988888776543  2245


Q ss_pred             ceEEEECC---CCCEEEEEc--CCCcEEEEECCCCceEEEe
Q 020021          254 TLEASFSP---EGMFVISGS--GDGSVYAWSVRSGKEVASW  289 (332)
Q Consensus       254 ~~~v~~sp---dg~~l~sgs--~Dg~i~vWd~~~~~~~~~~  289 (332)
                      +..+...|   .....++++  ..+.|.+|++.+|.+...+
T Consensus      1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             cceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence            55555443   445555554  4779999999998765444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.51  E-value=1.6e-11  Score=114.14  Aligned_cols=223  Identities=15%  Similarity=0.126  Sum_probs=141.7

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D---~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      .+.+..+...+.+.+|+|||++|+.++.+   ..|.+||+.+++... +..+...+...+|+|+++.+++.....-+..+
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i  260 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI  260 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence            35566677788999999999999887754   489999999876543 22233344567899999988765433224568


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC-CC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEe
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF  180 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (332)
                      .+||+.+++.. .+..|........|+|+++.|+..+. ++  .|.++|+.+++....                      
T Consensus       261 ~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l----------------------  317 (417)
T TIGR02800       261 YVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL----------------------  317 (417)
T ss_pred             EEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe----------------------
Confidence            89999887543 34445555556789999998876654 33  344555443321100                      


Q ss_pred             CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC---eEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~v  257 (332)
                                          ..  .........+||||++++.+..++   .|.++|+.++.... +..   . ......
T Consensus       318 --------------------~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~---~-~~~~~p  370 (417)
T TIGR02800       318 --------------------TF--RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD---T-GLDESP  370 (417)
T ss_pred             --------------------ec--CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC---C-CCCCCc
Confidence                                00  001234568999999999887775   89999987754422 211   1 112345


Q ss_pred             EECCCCCEEEEEcCCC---cEEEEECCCCceEEEecCCCCCCceEEe
Q 020021          258 SFSPEGMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKW  301 (332)
Q Consensus       258 ~~spdg~~l~sgs~Dg---~i~vWd~~~~~~~~~~~~~~~~v~~l~~  301 (332)
                      +|+|||++|+..+.++   .+++.+. +++....+....+.+..++|
T Consensus       371 ~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       371 SFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             eECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence            8999999998887765   4556554 45555555444444444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.48  E-value=9.1e-10  Score=98.22  Aligned_cols=259  Identities=14%  Similarity=0.146  Sum_probs=159.8

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeeeEEeeeccc-------ceeEEEEcc
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASD----------DESIRLYDVTAATCLKTINSKKY-------GVDLVCFTS   86 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~----------D~tv~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~   86 (332)
                      .+...++..-..+-. + +||||+.|..+..          +..|.+||+.+++.+..+.....       ....+++++
T Consensus        37 ~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~  114 (352)
T TIGR02658        37 GRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP  114 (352)
T ss_pred             CEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC
Confidence            344444443333332 4 8999988766655          78999999999999988864322       123678999


Q ss_pred             CCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCC-ceEE-EEEEe--c
Q 020021           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQ-GLLRV--Q  162 (332)
Q Consensus        87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~-~~~~-~~~~~--~  162 (332)
                      +++.++..... -++.+-+.|+.+++.+..+.--. ...-...++  ..+..-+.||....-.+.. ++.. .....  .
T Consensus       115 dgk~l~V~n~~-p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e--~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~  190 (352)
T TIGR02658       115 DNKTLLFYQFS-PSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN--DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHP  190 (352)
T ss_pred             CCCEEEEecCC-CCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC--CccEEEeecCceEEEEecCCCceEEeeeeeecC
Confidence            99988876532 26889999999998877655311 111111111  1122234455444332211 1110 01010  1


Q ss_pred             ------CceeEEEcCCCeEEEEEeCCEEEEEECccCCCC---CeeEEEecC-----CCCCceeEEEcCCCCEEEEEc---
Q 020021          163 ------GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG---PFDIFSVGG-----DISDANVVKFSNDGRLMLLTT---  225 (332)
Q Consensus       163 ------~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~---~~~~~~~~~-----~~~~v~~v~~s~dg~~l~~~~---  225 (332)
                            ..+ .....++..+.+++.|.|.+.|+......   +...+..+.     .+....-++++|||+.+.+..   
T Consensus       191 ~~~~v~~rP-~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~  269 (352)
T TIGR02658       191 EDEYLINHP-AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR  269 (352)
T ss_pred             CccccccCC-ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence                  111 11222667777787899999996433221   122221111     223445599999998776632   


Q ss_pred             -------CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEEEc-CCCcEEEEECCCCceEEEecCCC
Q 020021          226 -------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVYAWSVRSGKEVASWMSFD  293 (332)
Q Consensus       226 -------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sgs-~Dg~i~vWd~~~~~~~~~~~~~~  293 (332)
                             ..++|.++|..+++.+..+..    ...+..++||||++ +|++.. .++.|.+.|..+++.++++....
T Consensus       270 ~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg  342 (352)
T TIGR02658       270 AKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLG  342 (352)
T ss_pred             ccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCC
Confidence                   225899999999999887763    24667899999999 877665 57889999999999998874443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.48  E-value=1e-11  Score=116.36  Aligned_cols=242  Identities=14%  Similarity=0.143  Sum_probs=157.2

Q ss_pred             CCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCee--eEE----eeecccceeEEEEccCCCE--EEEecCCCCCceeE
Q 020021           34 NGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATC--LKT----INSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLR  104 (332)
Q Consensus        34 ~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~--~~~----~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~v~  104 (332)
                      ..+|.++.|+|.. ++||.|.++|.|-+||+..+..  ...    ...|..++..+.|..+...  +++++.   |+.|.
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss---DG~i~  318 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS---DGSIC  318 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec---CCcEe
Confidence            4679999999865 7789999999999999976543  221    2346667888888765554  887775   88999


Q ss_pred             EEEccCCce-E-----EEee------cccccEEEEEecC-CCCeEEEeeCCCcEEE---EeCCCceE-----EEEEEecC
Q 020021          105 LLSLHDNKY-L-----RYFK------GHHDRVVSLSLCS-SKDCFISGSLDRTVLL---WDQRAEKC-----QGLLRVQG  163 (332)
Q Consensus       105 v~d~~~~~~-~-----~~~~------~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~i---Wd~~~~~~-----~~~~~~~~  163 (332)
                      .|++..-.. .     ....      .-...++++.|.+ +...|+-|+.+|.|..   ++.+....     ......+.
T Consensus       319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~  398 (555)
T KOG1587|consen  319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI  398 (555)
T ss_pred             eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence            998654221 1     1111      1234688999998 6678999999998876   22222210     10111111


Q ss_pred             --ceeEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCe
Q 020021          164 --RPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT  239 (332)
Q Consensus       164 --~~~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~  239 (332)
                        .......| ...++.++.|-++++|...... .++  +....+...+..+++||.. .+++++..+|.+.+||+....
T Consensus       399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~-~Pl--~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA-SPL--LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             cceEeeecCCCccceeeeeccceeEeccccCCC-Ccc--hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence              11222233 2356666669999999876322 122  2222233348889999987 567778889999999986543


Q ss_pred             EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       240 ~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      ..-..... ........+.|+++|+.|+.|...|++.+|++..
T Consensus       476 ~~Pv~s~~-~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  476 EEPVLSQK-VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cCCccccc-ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            22111111 1234445678999999999999999999999964

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=5.1e-11  Score=111.32  Aligned_cols=225  Identities=12%  Similarity=0.144  Sum_probs=143.1

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D---~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      +.+..+...+...+|||||+.|+..+.+   ..|.+||+.+++... +......+....|+|+++.+++.....-+..+.
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence            4566677789999999999999877655   368889998886543 222222344578999999887654322245788


Q ss_pred             EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC-CCc--EEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  181 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (332)
                      ++|+.+++.. .+..+........|+||++.++..+. ++.  |.++|+.+++.....                      
T Consensus       271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt----------------------  327 (430)
T PRK00178        271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT----------------------  327 (430)
T ss_pred             EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee----------------------
Confidence            8899887643 45556666677889999997765553 333  444455443321100                      


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC-C--eEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~  258 (332)
                                          ..+  .......+||||+.++....+ +  .|.++|+.+++.. .+..  .  .......
T Consensus       328 --------------------~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~--~--~~~~~p~  380 (430)
T PRK00178        328 --------------------FVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD--T--SLDESPS  380 (430)
T ss_pred             --------------------cCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC--C--CCCCCce
Confidence                                000  011235799999988876543 3  5888998877643 2221  1  1122458


Q ss_pred             ECCCCCEEEEEcCC---CcEEEEECCCCceEEEecCCCCCCceEEeCCC
Q 020021          259 FSPEGMFVISGSGD---GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  304 (332)
Q Consensus       259 ~spdg~~l~sgs~D---g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~  304 (332)
                      |+|||++++-.+.+   ..++++++. +.....+..+.+.+...+|+|-
T Consensus       381 ~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        381 VAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            99999999887654   357788874 4444445555566777788873

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=4.2e-11  Score=112.07  Aligned_cols=224  Identities=16%  Similarity=0.124  Sum_probs=138.7

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCC-C--cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDD-E--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D-~--tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      +.+..+...+.+..|||||++|+-.+.+ +  .|.+||+.+++... +...........|+|+++.+++.....-...|.
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence            3444556678889999999998876654 2  58888998876432 222222234578999999887754322134588


Q ss_pred             EEEccCCceEEEeecccccEEEEEecCCCCeEEEee-CCCcEEE--EeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLL--WDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  181 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s-~Dg~i~i--Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (332)
                      ++|+++++. ..+..+........|+||++.++..+ .++...+  +|+.+++....                       
T Consensus       290 ~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-----------------------  345 (448)
T PRK04792        290 VVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-----------------------  345 (448)
T ss_pred             EEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-----------------------
Confidence            889887764 34555555667889999999776554 3444333  34433321100                       


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC-C--eEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~  258 (332)
                                         ...+.  .....++||||++++..+.+ +  .|.++|+.+++... +..  .  .......
T Consensus       346 -------------------t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~--~--~~d~~ps  399 (448)
T PRK04792        346 -------------------TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS--T--RLDESPS  399 (448)
T ss_pred             -------------------ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC--C--CCCCCce
Confidence                               00000  11235799999988776543 3  56678887776432 211  1  1112347


Q ss_pred             ECCCCCEEEEEcCCC---cEEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021          259 FSPEGMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKWTP  303 (332)
Q Consensus       259 ~spdg~~l~sgs~Dg---~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp  303 (332)
                      |+|||++|+..+.++   .+++++. +++....+..+.+.+...+|+|
T Consensus       400 ~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        400 VAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence            999999887765543   3778887 5666666666666677888887

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.46  E-value=1.8e-13  Score=128.20  Aligned_cols=247  Identities=16%  Similarity=0.243  Sum_probs=180.0

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      ...+...+++||++.|+.++.+.++.+++++|.|..||+|-+.++..+..+.+|...|+.++|+|..    +   .+.|+
T Consensus       220 et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----s---ss~dg  292 (1113)
T KOG0644|consen  220 ETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----S---SSDDG  292 (1113)
T ss_pred             cchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----c---CCCCC
Confidence            3456678899999999999999999999999999999999999999999999999999999999976    1   24489


Q ss_pred             eeEEEEccCCceEEE---ee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE--EEEecCceeEEEcCCCeE
Q 020021          102 SLRLLSLHDNKYLRY---FK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGRPAAAYDDQGLV  175 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~---~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~--~~~~~~~~~~~~~~~~~~  175 (332)
                      ++++||..-...+..   ++ .-.+.+-.+.|...+..++|++.|++-+.|.+....+..  ++-...    ..+.+..+
T Consensus       293 t~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~----ssd~~~~~  368 (1113)
T KOG0644|consen  293 TCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTR----SSDLSSIV  368 (1113)
T ss_pred             ceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEec----cccccccc
Confidence            999999751111111   01 123556778888899999999999999999865332211  110000    00112334


Q ss_pred             EEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021          176 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  254 (332)
Q Consensus       176 ~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  254 (332)
                      ++.-.+-.+.+|++-.+...    ..+.++...+..+.++|=. +...+++-||...|||+-.|..+..+..   .....
T Consensus       369 ~~ar~~~~~~vwnl~~g~l~----H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~---gh~kl  441 (1113)
T KOG0644|consen  369 VTARNDHRLCVWNLYTGQLL----HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI---GHGKL  441 (1113)
T ss_pred             eeeeeeeEeeeeecccchhh----hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec---cccee
Confidence            44445677888987654221    1233555677888888855 4556789999999999999988877662   24556


Q ss_pred             eEEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 020021          255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEV  286 (332)
Q Consensus       255 ~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~  286 (332)
                      ...+||+||..++....-|.++|.....++..
T Consensus       442 ~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  442 VDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             eccccCCCCceEecCCCCCceEEeccCCCccc
Confidence            67799999999998888899999987655543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=1.7e-11  Score=106.27  Aligned_cols=245  Identities=15%  Similarity=0.191  Sum_probs=168.1

Q ss_pred             EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC------CceEEEeec-ccccEEEEEecCCCCeEEEeeCC
Q 020021           70 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD------NKYLRYFKG-HHDRVVSLSLCSSKDCFISGSLD  142 (332)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~------~~~~~~~~~-h~~~V~~v~~~~~~~~l~s~s~D  142 (332)
                      +.+..|..-|..+.|+.++..++++   |-|..+++|+++.      .+++..... |...|.+++|...++.|.||+.+
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SG---GDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASG---GDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeec---CCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            3455677778889999998877765   4488999999853      345555544 44899999999999999999999


Q ss_pred             CcEEEEeCCCceEEEEEEecCceeEEE----cCCC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC
Q 020021          143 RTVLLWDQRAEKCQGLLRVQGRPAAAY----DDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  217 (332)
Q Consensus       143 g~i~iWd~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d  217 (332)
                      ++|..-|+++.+.+-++.....-..++    +|-. .++.++.++.|.+||.|...+ +...+..+.-......+.|.|.
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~-~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN-PISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC-CCceeeecCCCccceeeeecCC
Confidence            999999999887665554333222222    3433 445555679999999997653 3334444444456778899996


Q ss_pred             C-CEEEEEcCCCeEEEEEccCCeEe-EEeee-c--CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC
Q 020021          218 G-RLMLLTTMEGHIHVLDSFRGTLL-STYNV-K--PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF  292 (332)
Q Consensus       218 g-~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~--~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~  292 (332)
                      - .+|++.+..+-+.+||.+..... ..+.. .  +.....-..+.|+|.|..+++--.-..=-++|+...++..-...|
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~  285 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH  285 (609)
T ss_pred             CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence            6 67788888999999998764321 11111 1  111122356889999999998866667778898775553333333


Q ss_pred             CC-------CCceEEeCCCeeEEEeccce--EEEec
Q 020021          293 DT-------EPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       293 ~~-------~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      +.       .+.+++|..|.. +++|+.+  +.+|.
T Consensus       286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wk  320 (609)
T KOG4227|consen  286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWK  320 (609)
T ss_pred             CCCcceeeeeeeeeeeeccee-eeccCcccceEEEe
Confidence            32       456688876655 8888888  66663

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.44  E-value=2.6e-09  Score=95.35  Aligned_cols=263  Identities=11%  Similarity=0.053  Sum_probs=161.3

Q ss_pred             CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC-------CCCceeEEEEccCCceEEEeeccc-------
Q 020021           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDNKYLRYFKGHH-------  121 (332)
Q Consensus        56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~v~v~d~~~~~~~~~~~~h~-------  121 (332)
                      ++|.+.|..+++.+.++.....+-. + ++++++.++.++..       --+..|.+||.++.+.+..+.--.       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            8999999999999998876544433 4 99999998887640       026789999999999887776311       


Q ss_pred             ccEEEEEecCCCCeEEEee--CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeE
Q 020021          122 DRVVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI  199 (332)
Q Consensus       122 ~~V~~v~~~~~~~~l~s~s--~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~  199 (332)
                      ..-..++++|||+++....  .+..+-+.|+.+++.+..+..+.-...........+..+.|+......+..........
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence            1234678999999887654  37899999999999888776654222222222222223334333322221111100000


Q ss_pred             EEe-cCCCCC--ceeEEEcC-CCCEEEEEcCCCeEEEEEccCC-----eEeEEeeecCC----CCCcceEEEECCCCCEE
Q 020021          200 FSV-GGDISD--ANVVKFSN-DGRLMLLTTMEGHIHVLDSFRG-----TLLSTYNVKPV----SRNSTLEASFSPEGMFV  266 (332)
Q Consensus       200 ~~~-~~~~~~--v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~----~~~~~~~v~~spdg~~l  266 (332)
                      ..+ .+....  .+- .|++ ||+.+..+.. |.|++.|+...     +....+.....    .....--++++||++.+
T Consensus       185 ~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l  262 (352)
T TIGR02658       185 TEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI  262 (352)
T ss_pred             eeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence            000 000000  011 4566 7877666655 99999995432     22222211100    01111128999999988


Q ss_pred             EEEc----------CCCcEEEEECCCCceEEEecCCCCCCceEEeCCCee-EEEecc---ceEEEeccccc
Q 020021          267 ISGS----------GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS---SELSFWIPDLS  323 (332)
Q Consensus       267 ~sgs----------~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~t~~---~d~~~w~~~~~  323 (332)
                      +...          ..+.|.++|..+++.+..+.. ..++..|+++||++ +|.+..   +++.+.+....
T Consensus       263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            8743          224799999999998887653 45788999999998 665433   45888886443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=2e-11  Score=104.86  Aligned_cols=224  Identities=17%  Similarity=0.325  Sum_probs=148.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeec-ccceeEEEEccCCCE-EEEecCCCCCceeEEEEccCC-
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDN-  111 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~s~~g~d~~v~v~d~~~~-  111 (332)
                      -.+..++|++--.-+|.+..|-+|||||-+. ++...++.. +..|.+++|.|.+.. ++.++.    .-|.+|..... 
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr----~gIciW~~s~tl  173 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR----AGICIWSDSRTL  173 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec----ceeEEEEcCccc
Confidence            4467888988555679999999999999876 554455443 446899999997654 555554    34888875321 


Q ss_pred             ---ce----------EEEeecccccEEEEEecCCCCeEEEeeC-CCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEE
Q 020021          112 ---KY----------LRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  177 (332)
Q Consensus       112 ---~~----------~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (332)
                         ..          +....|| .+|+++.|.+||..++++|. |..|++||..++.+......                
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~----------------  236 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK----------------  236 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc----------------
Confidence               11          1122355 78999999999999999986 56899999988765433210                


Q ss_pred             EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v  257 (332)
                                             .    ...+.-+.+||||.++.+++-|+.-++|.....--.....   ...+.+...
T Consensus       237 -----------------------g----lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~---lgsgrvqta  286 (445)
T KOG2139|consen  237 -----------------------G----LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI---LGSGRVQTA  286 (445)
T ss_pred             -----------------------C----CCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee---ccCCceeee
Confidence                                   0    1235568899999999999999999999643221111122   223467778


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCC-ce-----------E---EEe------c---CCCCCCceEEeCCCeeEEEec
Q 020021          258 SFSPEGMFVISGSGDGSVYAWSVRSG-KE-----------V---ASW------M---SFDTEPPVIKWTPGSLMFVTG  311 (332)
Q Consensus       258 ~~spdg~~l~sgs~Dg~i~vWd~~~~-~~-----------~---~~~------~---~~~~~v~~l~~sp~~~~l~t~  311 (332)
                      +|+|+|++|+-+.. |.=+++.+.-. +.           +   ..+      .   --.+++.+++|.|.|.+|+.-
T Consensus       287 cWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~  363 (445)
T KOG2139|consen  287 CWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI  363 (445)
T ss_pred             eecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence            99999998776643 44455554321 10           0   011      0   113456789999998877764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.44  E-value=1.4e-10  Score=107.86  Aligned_cols=206  Identities=14%  Similarity=0.161  Sum_probs=133.6

Q ss_pred             CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCe
Q 020021           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  135 (332)
Q Consensus        56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~  135 (332)
                      ..|.++|....+ .+.+..+...+....|+|+++.+++....+-...+.+||+.+++.. .+..+...+.++.|+||++.
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCE
Confidence            357788875433 3445455555777889999999988765433468999999887643 33445566777899999987


Q ss_pred             EE-EeeCCC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeE
Q 020021          136 FI-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV  212 (332)
Q Consensus       136 l~-s~s~Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v  212 (332)
                      |+ +.+.++  .|.+||+.++......                                            .+.......
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~l~--------------------------------------------~~~~~~~~~  283 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTRLT--------------------------------------------NGPGIDTEP  283 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEECC--------------------------------------------CCCCCCCCE
Confidence            65 445544  4777776554321110                                            000112235


Q ss_pred             EEcCCCCEEEEEcCC-C--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC---cEEEEECCCCceE
Q 020021          213 KFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEV  286 (332)
Q Consensus       213 ~~s~dg~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg---~i~vWd~~~~~~~  286 (332)
                      .|+|||+.++..+.. +  .|+++|+.+++... +..   ........+|+|||++++.++.++   .|.+||+.++.. 
T Consensus       284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~---~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-  358 (417)
T TIGR02800       284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF---RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-  358 (417)
T ss_pred             EECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec---CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-
Confidence            789999988766543 3  68888887765432 221   223345678999999999988876   899999987543 


Q ss_pred             EEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          287 ASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       287 ~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      ..+... ......+|+||+++|+..+.
T Consensus       359 ~~l~~~-~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       359 RVLTDT-GLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             EEccCC-CCCCCceECCCCCEEEEEEe
Confidence            333222 23455689999988877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.42  E-value=3.8e-10  Score=102.56  Aligned_cols=255  Identities=17%  Similarity=0.135  Sum_probs=154.3

Q ss_pred             EEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEE
Q 020021           49 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLS  128 (332)
Q Consensus        49 l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~  128 (332)
                      +++-..+++|.+.|..+.+.+..+......-..+.+++++++++.++.   |+.+.++|+.+++.+..++...+ -.+++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~~G~~-~~~i~   84 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIKVGGN-PRGIA   84 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE-SSE-EEEEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEecCCC-cceEE
Confidence            356778899999999999999999865433344779999998888754   78999999999999888876544 47799


Q ss_pred             ecCCCCeEEEee-CCCcEEEEeCCCceEEEEEEecC--------ceeEE-EcCCCe-EEEEEe-CCEEEEEECccCCCCC
Q 020021          129 LCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQG--------RPAAA-YDDQGL-VFAVAF-GGYIRMFDARKYEKGP  196 (332)
Q Consensus       129 ~~~~~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~~~--------~~~~~-~~~~~~-~~~~~~-~~~i~vwd~~~~~~~~  196 (332)
                      +++||++++.+. .++.+.++|.++.+.+..+....        +.... ..+... ++..-. .+.|-+.|........
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence            999999888665 68999999999988877765432        12222 233333 332333 4778777866542211


Q ss_pred             eeEEEecCCCCCceeEEEcCCCCEEEE-EcCCCeEEEEEccCCeEeEEeeecCC-CCCcceE-------EEE--CCCCCE
Q 020021          197 FDIFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTLLSTYNVKPV-SRNSTLE-------ASF--SPEGMF  265 (332)
Q Consensus       197 ~~~~~~~~~~~~v~~v~~s~dg~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~-------v~~--spdg~~  265 (332)
                      ......+   .......|+|+|+++++ ...++.|-++|..++++......... +..+...       .-|  +..+.+
T Consensus       165 ~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~  241 (369)
T PF02239_consen  165 VTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF  241 (369)
T ss_dssp             EEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred             eeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence            1222221   13456789999998765 46678999999999887765432111 1111111       111  223344


Q ss_pred             EEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEec
Q 020021          266 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG  311 (332)
Q Consensus       266 l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~  311 (332)
                      ..+.-....+.+||..+.+.+..+.....+ .-++-||+++++...
T Consensus       242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd  286 (369)
T PF02239_consen  242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVD  286 (369)
T ss_dssp             EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE
T ss_pred             ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEee
Confidence            433323346778999999999988776655 567779999988776

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.40  E-value=1.1e-08  Score=92.69  Aligned_cols=270  Identities=13%  Similarity=0.185  Sum_probs=163.6

Q ss_pred             EEEEeCC----CcEEEEEc--CCCeee--EEeeecccceeEEEEccCCCEEEEecCCC-CCceeEEEEccCC--ce--EE
Q 020021           49 LVTASDD----ESIRLYDV--TAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNG-WDESLRLLSLHDN--KY--LR  115 (332)
Q Consensus        49 l~tgs~D----~tv~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g-~d~~v~v~d~~~~--~~--~~  115 (332)
                      ++.|++.    +.|.+|++  ++++..  ..+. ......-+++++++..+++....+ .++.|..|.+...  +.  +.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            3455655    68888887  444432  2221 223355688999998888776532 4678999988764  22  22


Q ss_pred             EeecccccEEEEEecCCCCeEEEee-CCCcEEEEeCCC-ceEEEE---EEe------------cCceeEEEcCCCeEEEE
Q 020021          116 YFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRA-EKCQGL---LRV------------QGRPAAAYDDQGLVFAV  178 (332)
Q Consensus       116 ~~~~h~~~V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~~-~~~~~~---~~~------------~~~~~~~~~~~~~~~~~  178 (332)
                      .....-..-..++++|++++|+.+. .+|++.++++.. +.....   +..            +....+.+++++..+.+
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            2221223345688999999888886 589999999876 333322   111            01125677888776655


Q ss_pred             Ee--CCEEEEEECccCCCCCee---EEEecCCCCCceeEEEcCCCCEE-EEEcCCCeEEEEEcc--CCeEe--EEeeec-
Q 020021          179 AF--GGYIRMFDARKYEKGPFD---IFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSF--RGTLL--STYNVK-  247 (332)
Q Consensus       179 ~~--~~~i~vwd~~~~~~~~~~---~~~~~~~~~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~--~~~~~--~~~~~~-  247 (332)
                      ..  .+.|.+|++..... .+.   .... ..-..-+-++|+|||+++ ++...+++|.++++.  .+...  ...... 
T Consensus       161 ~dlG~D~v~~~~~~~~~~-~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~  238 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTG-KLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP  238 (345)
T ss_dssp             EETTTTEEEEEEE-TTS--TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred             EecCCCEEEEEEEeCCCc-eEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence            53  46899999865331 121   1121 122355789999999866 556778899999987  55432  222211 


Q ss_pred             --CCCCCcceEEEECCCCCEEEEEc-CCCcEEEEECC--CCce--EEEecCCCCCCceEEeCCCeeEEEeccc---eEEE
Q 020021          248 --PVSRNSTLEASFSPEGMFVISGS-GDGSVYAWSVR--SGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSF  317 (332)
Q Consensus       248 --~~~~~~~~~v~~spdg~~l~sgs-~Dg~i~vWd~~--~~~~--~~~~~~~~~~v~~l~~sp~~~~l~t~~~---d~~~  317 (332)
                        .........++++|||++|+... .+.+|.++++.  +++.  +..+......+..++++|+|++|+.+..   .+.+
T Consensus       239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v  318 (345)
T PF10282_consen  239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV  318 (345)
T ss_dssp             TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence              11122456799999999988774 46689999993  2332  3333333445789999999998876543   4888


Q ss_pred             eccc
Q 020021          318 WIPD  321 (332)
Q Consensus       318 w~~~  321 (332)
                      +.++
T Consensus       319 f~~d  322 (345)
T PF10282_consen  319 FDID  322 (345)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7664

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.40  E-value=1.6e-11  Score=101.56  Aligned_cols=115  Identities=11%  Similarity=0.268  Sum_probs=92.2

Q ss_pred             CCCcEEEEEECCCCCEEEE--EeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021           33 YNGRISSMDFHKSSSYLVT--ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~t--gs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~  110 (332)
                      ..++|.+++|+|+|+.+|.  |..++++.+||+. ++.+..+.  ...+..+.|+|+|+.+++++.++..+.+.+||+.+
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~  134 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK  134 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            3467999999999998654  4567899999996 66666664  34567799999999999987666678899999998


Q ss_pred             CceEEEeecccccEEEEEecCCCCeEEEeeC------CCcEEEEeCCC
Q 020021          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSL------DRTVLLWDQRA  152 (332)
Q Consensus       111 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~------Dg~i~iWd~~~  152 (332)
                      .+.+.... | ..++.++|+|+|++|+++..      |..++||++..
T Consensus       135 ~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  135 KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            88776654 3 34789999999999999874      78899999853

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.40  E-value=2.5e-11  Score=102.74  Aligned_cols=199  Identities=17%  Similarity=0.186  Sum_probs=144.4

Q ss_pred             ccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc---eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeC-C
Q 020021           76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ-R  151 (332)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~---~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~-~  151 (332)
                      ..+|++-+|.++.+.++.+..   ...+-+|......   ..+++..|...|++++|+|..++++|++.|+.-.+|.. .
T Consensus        10 ~~pitchAwn~drt~iAv~~~---~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPN---NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             cCceeeeeecCCCceEEeccC---CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            456888899999999988764   4578888876654   57889999999999999999999999999999999987 3


Q ss_pred             CceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEE
Q 020021          152 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH  231 (332)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~  231 (332)
                      .++...++.+                                      ..   ....+.+|.+||.+..+++++.-..|.
T Consensus        87 ~~~WkptlvL--------------------------------------lR---iNrAAt~V~WsP~enkFAVgSgar~is  125 (361)
T KOG1523|consen   87 GGTWKPTLVL--------------------------------------LR---INRAATCVKWSPKENKFAVGSGARLIS  125 (361)
T ss_pred             CCeeccceeE--------------------------------------EE---eccceeeEeecCcCceEEeccCccEEE
Confidence            3333222211                                      00   012357789999999999999999999


Q ss_pred             EEEccCCeEe--EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC-----CC-------------CceEEEecC
Q 020021          232 VLDSFRGTLL--STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV-----RS-------------GKEVASWMS  291 (332)
Q Consensus       232 i~d~~~~~~~--~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~-----~~-------------~~~~~~~~~  291 (332)
                      ++-...-.--  .....++ ....+.+++|.|++-.||+||.|+.+||+..     +.             |..+..+..
T Consensus       126 Vcy~E~ENdWWVsKhikkP-irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~  204 (361)
T KOG1523|consen  126 VCYYEQENDWWVSKHIKKP-IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS  204 (361)
T ss_pred             EEEEecccceehhhhhCCc-cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc
Confidence            9876432110  0001112 3467788999999999999999999999964     11             111122224


Q ss_pred             CCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          292 FDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       292 ~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      ..+.+..+.|+|+|..|+-.+-|  +.+=+
T Consensus       205 ~ggwvh~v~fs~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  205 SGGWVHGVLFSPSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             CCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence            45678889999999999887776  55444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=4.9e-12  Score=113.84  Aligned_cols=207  Identities=15%  Similarity=0.217  Sum_probs=136.8

Q ss_pred             EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce---eEEEc---CCCeEEEEEeCCEEEEEE
Q 020021          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---AAAYD---DQGLVFAVAFGGYIRMFD  188 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~i~vwd  188 (332)
                      ..|.||++.|++++|+.+|.+|+|||.|-.+.|||.-..+.+..+......   ++.|-   .+..+++++.|..|+++|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            468899999999999999999999999999999998777766666543321   22222   345677788899999999


Q ss_pred             CccCCCCCe------eEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEee--------ecCCCCCc
Q 020021          189 ARKYEKGPF------DIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYN--------VKPVSRNS  253 (332)
Q Consensus       189 ~~~~~~~~~------~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~~~  253 (332)
                      +...+.+..      .......|...|-.++..|++ ..+-+++.||+|+-+|++..+.-..-.        +.+ ....
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~-~lie  202 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP-QLIE  202 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch-hhhe
Confidence            875432211      122233455567778889999 778889999999999997643211100        000 0111


Q ss_pred             ceEEEECCC-CCEEEEEcCCCcEEEEECCC--------Cc----------eEEEe-cCCC---C-----C---CceEEeC
Q 020021          254 TLEASFSPE-GMFVISGSGDGSVYAWSVRS--------GK----------EVASW-MSFD---T-----E---PPVIKWT  302 (332)
Q Consensus       254 ~~~v~~spd-g~~l~sgs~Dg~i~vWd~~~--------~~----------~~~~~-~~~~---~-----~---v~~l~~s  302 (332)
                      .-++..+|. -.+||.|+.|--.+++|...        ++          ++..+ ..|-   .     .   .+-+.|+
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn  282 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN  282 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence            225678885 47888999999999999421        11          11111 1111   1     1   2448899


Q ss_pred             CCee-EEEe-ccceEEEecccc
Q 020021          303 PGSL-MFVT-GSSELSFWIPDL  322 (332)
Q Consensus       303 p~~~-~l~t-~~~d~~~w~~~~  322 (332)
                      |+|. +|++ +++.|.+++...
T Consensus       283 pNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  283 PNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             CCCcEEEEeeCCeEEEEEeecC
Confidence            9974 5555 555588887644

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=7.5e-10  Score=103.49  Aligned_cols=205  Identities=12%  Similarity=0.102  Sum_probs=128.7

Q ss_pred             cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeE
Q 020021           57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF  136 (332)
Q Consensus        57 tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l  136 (332)
                      .|.++|.+.++ .+.+..+...+....|+|+++.+++.+...-...+.+||+.+++... +....+.+....|+|||+.|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            47777877544 34454555567788999999999887644324578999998876533 33333445578999999977


Q ss_pred             E-EeeCCC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEE
Q 020021          137 I-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK  213 (332)
Q Consensus       137 ~-s~s~Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~  213 (332)
                      + +.+.++  .|.+||+.++......                                            .+........
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt--------------------------------------------~~~~~~~~~~  293 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVT--------------------------------------------NHPAIDTEPF  293 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcc--------------------------------------------cCCCCcCCeE
Confidence            6 555555  4666676554321100                                            0001123457


Q ss_pred             EcCCCCEEEEEcC-CC--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-C--cEEEEECCCCceEE
Q 020021          214 FSNDGRLMLLTTM-EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-G--SVYAWSVRSGKEVA  287 (332)
Q Consensus       214 ~s~dg~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-g--~i~vWd~~~~~~~~  287 (332)
                      |||||+.++..+. +|  .|+++|+.+++... +...   ........|||||++|+..+.+ +  .|.+||+.+++. .
T Consensus       294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~---~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~  368 (430)
T PRK00178        294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV---GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-R  368 (430)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC---CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-E
Confidence            9999988776654 33  68888887776432 2211   1122346899999999877653 3  588999987754 3


Q ss_pred             EecCCCCCCceEEeCCCeeEEEeccc
Q 020021          288 SWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       288 ~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      .+.. ........|+|||++++..+.
T Consensus       369 ~lt~-~~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        369 ILTD-TSLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             EccC-CCCCCCceECCCCCEEEEEEe
Confidence            3322 222335689999998876553

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.35  E-value=3.2e-12  Score=114.69  Aligned_cols=99  Identities=21%  Similarity=0.371  Sum_probs=86.1

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      +.=-++.|...+|+|||.+||+.|.|+.+||+|..+.+.+...+..=.+..++||+|++++|+++   |.|.-|.||.+.
T Consensus       286 w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG---GEDDLVtVwSf~  362 (636)
T KOG2394|consen  286 WHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG---GEDDLVTVWSFE  362 (636)
T ss_pred             eEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec---CCcceEEEEEec
Confidence            33345689999999999999999999999999999887766555444567899999999999987   458899999999


Q ss_pred             CCceEEEeecccccEEEEEecC
Q 020021          110 DNKYLRYFKGHHDRVVSLSLCS  131 (332)
Q Consensus       110 ~~~~~~~~~~h~~~V~~v~~~~  131 (332)
                      .++.+..-+||+..|..|+|.|
T Consensus       363 erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  363 ERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cceEEEeccccccceeeEeecc
Confidence            9999999999999999999983

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.34  E-value=1.6e-10  Score=98.88  Aligned_cols=245  Identities=20%  Similarity=0.323  Sum_probs=155.9

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-----eeEEeeeccc------------ceeEEEEccCCCE--EEEe
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----CLKTINSKKY------------GVDLVCFTSHPTT--VIYS   94 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~-----~~~~~~~~~~------------~v~~~~~~~~~~~--~~~~   94 (332)
                      ..-|++|.|+..|.+||||..+|.|-++.-+...     ....++.|..            .|..+.|.+++..  ++.+
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3568999999999999999999999999654322     1222333322            2445666665552  2322


Q ss_pred             cCCCCCceeEEEEccCCce-----------------------------------EEEe-ecccccEEEEEecCCCCeEEE
Q 020021           95 SKNGWDESLRLLSLHDNKY-----------------------------------LRYF-KGHHDRVVSLSLCSSKDCFIS  138 (332)
Q Consensus        95 s~~g~d~~v~v~d~~~~~~-----------------------------------~~~~-~~h~~~V~~v~~~~~~~~l~s  138 (332)
                      .   -|.++++|-+.....                                   .+.+ ..|+-.|+++.++.|...++|
T Consensus       105 t---NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  105 T---NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             c---CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            2   288999998753211                                   1112 368888999999999999988


Q ss_pred             eeCCCcEEEEeCCC-ceEEEEE--Eec-------CceeEEEcCC--CeEEEEEeCCEEEEEECccCCCCC--eeEEEec-
Q 020021          139 GSLDRTVLLWDQRA-EKCQGLL--RVQ-------GRPAAAYDDQ--GLVFAVAFGGYIRMFDARKYEKGP--FDIFSVG-  203 (332)
Q Consensus       139 ~s~Dg~i~iWd~~~-~~~~~~~--~~~-------~~~~~~~~~~--~~~~~~~~~~~i~vwd~~~~~~~~--~~~~~~~-  203 (332)
                      + .|=.|.+|+++- .++....  +..       ....+.++|.  ..+..+++.|+||+-|+|......  ...+... 
T Consensus       182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            7 567899998753 2222111  111       0123455553  344556678999999998532110  0011110 


Q ss_pred             ---------CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEc-cCCeEeEEeeecCC---------CCCcc---eEEEECC
Q 020021          204 ---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDS-FRGTLLSTYNVKPV---------SRNST---LEASFSP  261 (332)
Q Consensus       204 ---------~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~---------~~~~~---~~v~~sp  261 (332)
                               .-.+.+..+.||+.|+++++..- -+|++||+ ...+++.++..+..         ...++   ..++||-
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg  339 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG  339 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence                     11246788999999999998754 48999998 33444444432211         11222   3589999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCC
Q 020021          262 EGMFVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       262 dg~~l~sgs~Dg~i~vWd~~~~  283 (332)
                      ++.+++|||....++++++..|
T Consensus       340 ~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  340 NDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CcceEecccccceEEEecCCCC
Confidence            9999999999999999996544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.34  E-value=3.7e-12  Score=112.48  Aligned_cols=192  Identities=17%  Similarity=0.219  Sum_probs=140.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      ..|..+.|-|-.-+|++++.-|.++.-|+.+|+.+..+......+...+-.|....+-.+-   ..++|.+|.....+++
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh---snGtVSlWSP~skePL  286 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH---SNGTVSLWSPNSKEPL  286 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC---CCceEEecCCCCcchH
Confidence            4677889999988999999999999999999999888877766777777777766555553   3789999999999999


Q ss_pred             EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE-CccCC
Q 020021          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD-ARKYE  193 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd-~~~~~  193 (332)
                      ..+..|.++|.++++.++|.++||.|.|..++|||++.-.....+..+.......-.+..+++++.+..+.+|. .....
T Consensus       287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s  366 (545)
T KOG1272|consen  287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGS  366 (545)
T ss_pred             HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCC
Confidence            99999999999999999999999999999999999987665545444322222222334566788888999994 32211


Q ss_pred             C---CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021          194 K---GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (332)
Q Consensus       194 ~---~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i  232 (332)
                      .   .++......   ..|..+.|-|=..+|..|-..|--.+
T Consensus       367 ~~~~~pYm~H~~~---~~V~~l~FcP~EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  367 GHGETPYMNHRCG---GPVEDLRFCPYEDVLGIGHAGGITSI  405 (545)
T ss_pred             CCCCcchhhhccC---cccccceeccHHHeeeccccCCceeE
Confidence            1   111111111   25677778777666666655554333

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=2.7e-11  Score=116.39  Aligned_cols=200  Identities=16%  Similarity=0.252  Sum_probs=147.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc----ceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      -.+.|+.-.+..+...++.+..+..+-|||...+..+..+.....    ....+-+++..-++++++.   -+.+.+|+.
T Consensus        86 ~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv---~~~iivW~~  162 (967)
T KOG0974|consen   86 FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV---FGEIIVWKP  162 (967)
T ss_pred             ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc---cccEEEEec
Confidence            345566666777788999999999999999987766655543321    1222334455555666554   568999998


Q ss_pred             cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE
Q 020021          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD  188 (332)
Q Consensus       109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd  188 (332)
                      ...+....+.||.+.|..+.++-||++++|.|.|+++|+|++.+.+...                   .++++...|+| 
T Consensus       163 ~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------~~~fgHsaRvw-  222 (967)
T KOG0974|consen  163 HEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------------CTGFGHSARVW-  222 (967)
T ss_pred             cccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------------------cccccccceeE-
Confidence            7544334689999999999999999999999999999999998765321                   12233334444 


Q ss_pred             CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (332)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s  268 (332)
                                            .++|.|.  .+++.+.|-+.++|+.. ++.+..+..  +....+++++..++...++|
T Consensus       223 ----------------------~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~--h~g~~iw~~~~~~~~~~~vT  275 (967)
T KOG0974|consen  223 ----------------------ACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDE--HSGKGIWKIAVPIGVIIKVT  275 (967)
T ss_pred             ----------------------EEEeccc--eeEEeccceEEEEEecc-cceehhhhh--hhhcceeEEEEcCCceEEEe
Confidence                                  4677777  88999999999999754 555555543  23457788999999999999


Q ss_pred             EcCCCcEEEEECCC
Q 020021          269 GSGDGSVYAWSVRS  282 (332)
Q Consensus       269 gs~Dg~i~vWd~~~  282 (332)
                      ++.|+.+++|++..
T Consensus       276 ~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  276 GGNDSTLKLWDLNG  289 (967)
T ss_pred             eccCcchhhhhhhc
Confidence            99999999999865

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.33  E-value=1.7e-08  Score=91.53  Aligned_cols=275  Identities=15%  Similarity=0.179  Sum_probs=161.5

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeC----CCcEEEEEcCCC--ee--eEEeeecccceeEEEEccCCCEEEE
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASD----DESIRLYDVTAA--TC--LKTINSKKYGVDLVCFTSHPTTVIY   93 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~----D~tv~iwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~~   93 (332)
                      +.++....+. -....+-++++|++++|.++..    ++.|..|++...  +.  +...........-+++.++++.++.
T Consensus        25 g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~v  103 (345)
T PF10282_consen   25 GTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYV  103 (345)
T ss_dssp             TEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEE
T ss_pred             CCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEE
Confidence            3444444432 2233556789999999988776    579999988753  33  3333323333456889999999888


Q ss_pred             ecCCCCCceeEEEEccC-CceEEE---ee----------cccccEEEEEecCCCCeEEEeeC-CCcEEEEeCCCce--EE
Q 020021           94 SSKNGWDESLRLLSLHD-NKYLRY---FK----------GHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEK--CQ  156 (332)
Q Consensus        94 ~s~~g~d~~v~v~d~~~-~~~~~~---~~----------~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~--~~  156 (332)
                      +.-  .++++.++++.. +.....   +.          .-.....++.++|++++++.... ...|.++++....  ..
T Consensus       104 any--~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~  181 (345)
T PF10282_consen  104 ANY--GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT  181 (345)
T ss_dssp             EET--TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred             EEc--cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence            753  378999999977 333221   11          11234678999999998777643 2368888886554  32


Q ss_pred             E--EEEecC---ceeEEEcCCCeEEEEEe--CCEEEEEECccCCCCCeeE---EEec---CC-CCCceeEEEcCCCCEEE
Q 020021          157 G--LLRVQG---RPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDI---FSVG---GD-ISDANVVKFSNDGRLML  222 (332)
Q Consensus       157 ~--~~~~~~---~~~~~~~~~~~~~~~~~--~~~i~vwd~~~~~~~~~~~---~~~~---~~-~~~v~~v~~s~dg~~l~  222 (332)
                      .  .+..+.   ---..+++++.++.+..  ++.|.++++.... +.+..   ....   .. ......+++||||+++.
T Consensus       182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly  260 (345)
T PF10282_consen  182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY  260 (345)
T ss_dssp             EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred             EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccccccCCceeEEEecCCCEEE
Confidence            2  222221   12357778776665554  6899999877221 22221   1111   01 11456789999999766


Q ss_pred             EE-cCCCeEEEEEcc--CCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc-CCCcEEEEEC--CCCceEEEec-CCCCC
Q 020021          223 LT-TMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVYAWSV--RSGKEVASWM-SFDTE  295 (332)
Q Consensus       223 ~~-~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs-~Dg~i~vWd~--~~~~~~~~~~-~~~~~  295 (332)
                      ++ ...+.|.+|++.  ++++...-.. +........++++|+|++|+.+. .++.|.+|++  .+|.....-. ..-..
T Consensus       261 vsnr~~~sI~vf~~d~~~g~l~~~~~~-~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~  339 (345)
T PF10282_consen  261 VSNRGSNSISVFDLDPATGTLTLVQTV-PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPS  339 (345)
T ss_dssp             EEECTTTEEEEEEECTTTTTEEEEEEE-EESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred             EEeccCCEEEEEEEecCCCceEEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCC
Confidence            54 567899999983  3443222111 12233456799999999999886 5668999977  4555432221 11234


Q ss_pred             CceEEe
Q 020021          296 PPVIKW  301 (332)
Q Consensus       296 v~~l~~  301 (332)
                      +.||.|
T Consensus       340 p~ci~f  345 (345)
T PF10282_consen  340 PVCIVF  345 (345)
T ss_dssp             EEEEEE
T ss_pred             CEEEeC
Confidence            566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=2.5e-09  Score=96.89  Aligned_cols=281  Identities=14%  Similarity=0.233  Sum_probs=168.9

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEE-------ecCCCCCceeEEEEc
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY-------SSKNGWDESLRLLSL  108 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~s~~g~d~~v~v~d~  108 (332)
                      +....++|++|.++| -+.+..++|++..++..+.+....  .+..+-|+|-+.++..       .....-...+++|++
T Consensus        36 ~~~v~~~S~~G~lfA-~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v  112 (566)
T KOG2315|consen   36 PCNVFAYSNNGRLFA-YSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV  112 (566)
T ss_pred             cceeEEEcCCCcEEE-EEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence            355667888876665 677788999999887543333222  4567788887766522       111122456889999


Q ss_pred             cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-EEEEEEecCceeEEEcCCC--eEEEEE---eC-
Q 020021          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQG--LVFAVA---FG-  181 (332)
Q Consensus       109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~---~~-  181 (332)
                      +++.....++.....-+...|+.|....+=- ..+.+.+++...-+ ....++..+.....+++.+  ..+++-   .+ 
T Consensus       113 et~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG  191 (566)
T KOG2315|consen  113 ETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG  191 (566)
T ss_pred             ccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence            9855444444333333678888876532211 22567888865422 2223333333333333321  111110   01 


Q ss_pred             --CEEEEEECccCC---------------------------------------C-----CCeeEEEecC--------CCC
Q 020021          182 --GYIRMFDARKYE---------------------------------------K-----GPFDIFSVGG--------DIS  207 (332)
Q Consensus       182 --~~i~vwd~~~~~---------------------------------------~-----~~~~~~~~~~--------~~~  207 (332)
                        +.+|+|......                                       .     ..+..+...+        ..+
T Consensus       192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G  271 (566)
T KOG2315|consen  192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG  271 (566)
T ss_pred             CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence              244444322000                                       0     0000111111        136


Q ss_pred             CceeEEEcCCCCEEEE--EcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC---CCcEEEEECCC
Q 020021          208 DANVVKFSNDGRLMLL--TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DGSVYAWSVRS  282 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~---Dg~i~vWd~~~  282 (332)
                      +|.+++++|+|+.+++  |-+=-.+.|+|++ +.++..+-     .++-.++-|+|.|++|+-+|-   -|.|-|||+.+
T Consensus       272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-----CCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence            8999999999987665  4566789999976 56655442     344456889999999999876   46999999999


Q ss_pred             CceEEEecCCCCCCceEEeCCCeeEEEeccc--------eEEEecccccccccc
Q 020021          283 GKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--------ELSFWIPDLSKLGAY  328 (332)
Q Consensus       283 ~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~--------d~~~w~~~~~~~~~~  328 (332)
                      .+++..+...+  -+...|+|||.+|.|+.-        .++||......|.+.
T Consensus       346 ~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~  397 (566)
T KOG2315|consen  346 RKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK  397 (566)
T ss_pred             hhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence            88888776544  356889999999988642        289998887776553

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=8.7e-11  Score=101.05  Aligned_cols=187  Identities=13%  Similarity=0.255  Sum_probs=129.9

Q ss_pred             cEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec---CceeEEEcC-CCeEEEEEeCCEEEEEECccC------
Q 020021          123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAAYDD-QGLVFAVAFGGYIRMFDARKY------  192 (332)
Q Consensus       123 ~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~i~vwd~~~~------  192 (332)
                      .+..++|+++-..|+.+..|-+|+++|-+. .+...++..   ...+.++.| ....++++-.+.|-+|.....      
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~  178 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN  178 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence            467788998777899999999999999765 333333322   233455655 345777777788999964321      


Q ss_pred             ----CCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC-CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEE
Q 020021          193 ----EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (332)
Q Consensus       193 ----~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~  267 (332)
                          ...+..+....+| ..|+++.+.+||..+++++. +..|.|||..++..+....   -..+.+.-+.|||||.+|+
T Consensus       179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~---~glgg~slLkwSPdgd~lf  254 (445)
T KOG2139|consen  179 IRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP---KGLGGFSLLKWSPDGDVLF  254 (445)
T ss_pred             cccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc---cCCCceeeEEEcCCCCEEE
Confidence                1223334455555 57899999999999998874 5789999999887653321   1234455689999999999


Q ss_pred             EEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEE-Eeccce
Q 020021          268 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF-VTGSSE  314 (332)
Q Consensus       268 sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~t~~~d  314 (332)
                      ++.-|+..++|+.....--..+..-++.|..-+|+|+|+.| .+.+..
T Consensus       255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs  302 (445)
T KOG2139|consen  255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS  302 (445)
T ss_pred             EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC
Confidence            99999999999654332223333345588889999999754 344443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=2e-09  Score=100.80  Aligned_cols=205  Identities=10%  Similarity=0.092  Sum_probs=123.2

Q ss_pred             cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeE
Q 020021           57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF  136 (332)
Q Consensus        57 tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l  136 (332)
                      .+.++|.+..+. +.+......+....|+|+++.+++.+...-...+.++|+.+++... +...........|+|||+.|
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            666778765443 3444455567778999999999887643223468889998876432 22222333467899999977


Q ss_pred             EE-eeCCCc--EEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEE
Q 020021          137 IS-GSLDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK  213 (332)
Q Consensus       137 ~s-~s~Dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~  213 (332)
                      +. .+.++.  |.+||+.+++.....                                            .+.......+
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt--------------------------------------------~~~~~~~~p~  312 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRIT--------------------------------------------RHRAIDTEPS  312 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECc--------------------------------------------cCCCCccceE
Confidence            64 566665  555555443321000                                            0011224468


Q ss_pred             EcCCCCEEEEEcC-C--CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-C--cEEEEECCCCceEE
Q 020021          214 FSNDGRLMLLTTM-E--GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-G--SVYAWSVRSGKEVA  287 (332)
Q Consensus       214 ~s~dg~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-g--~i~vWd~~~~~~~~  287 (332)
                      |||||+.++..+. +  ..|+++|+.+++... +...   .......+|+|||++|+..+.+ +  .|.++|+.+++. .
T Consensus       313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~---g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~  387 (448)
T PRK04792        313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE---GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-Q  387 (448)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC---CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-E
Confidence            9999998876553 3  357777887776432 2111   1122346899999999877553 3  456678877654 3


Q ss_pred             EecCCCCCCceEEeCCCeeEEEeccc
Q 020021          288 SWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       288 ~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      .+... ......+|+|||++++..+.
T Consensus       388 ~lt~~-~~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        388 VLTST-RLDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             EccCC-CCCCCceECCCCCEEEEEEe
Confidence            33322 12234589999988766543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=2.8e-09  Score=99.10  Aligned_cols=229  Identities=14%  Similarity=0.120  Sum_probs=133.8

Q ss_pred             eccCCCcEEEEEECCCCCEE---EEEeCCC--cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC-C-CCce
Q 020021           30 FRDYNGRISSMDFHKSSSYL---VTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-G-WDES  102 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l---~tgs~D~--tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-g-~d~~  102 (332)
                      |......+.+-.|||||+.+   .+...++  .|.+.++.+++..+. ...........|+|+++.+++.+.. | .+-.
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence            44445566677999999752   2444444  456668877754332 2222233456899999998887632 2 2323


Q ss_pred             eEEEEccCC---ceEEEeecccccEEEEEecCCCCeEEEee-CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021          103 LRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  178 (332)
Q Consensus       103 v~v~d~~~~---~~~~~~~~h~~~V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      +..|++..+   +......++........|+|||+.|+..+ .+|..++|.+.....                       
T Consensus       259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~-----------------------  315 (428)
T PRK01029        259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE-----------------------  315 (428)
T ss_pred             EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc-----------------------
Confidence            444676642   33333333334456789999999877665 466666664321000                       


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC---CeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~  255 (332)
                        ++..+.               +......+....+||||+.++....+   ..|++||+.+++......    ....+.
T Consensus       316 --g~~~~~---------------lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~----~~~~~~  374 (428)
T PRK01029        316 --GQSPRL---------------LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT----SPENKE  374 (428)
T ss_pred             --ccceEE---------------eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC----CCCCcc
Confidence              000000               00001123456899999988876543   479999998886543221    112344


Q ss_pred             EEEECCCCCEEEEEcC---CCcEEEEECCCCceEEEecCCCCCCceEEeCCC
Q 020021          256 EASFSPEGMFVISGSG---DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  304 (332)
Q Consensus       256 ~v~~spdg~~l~sgs~---Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~  304 (332)
                      ...|+|||++|+..+.   ...|++||+..++. ..+....+.+...+|+|-
T Consensus       375 ~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        375 SPSWAIDSLHLVYSAGNSNESELYLISLITKKT-RKIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             ceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCcccCceecCC
Confidence            5789999998875433   34799999977654 334344455667888874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.29  E-value=3.2e-10  Score=110.80  Aligned_cols=215  Identities=18%  Similarity=0.227  Sum_probs=139.5

Q ss_pred             CceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCc-------eEEEEEEecC--ceeEEEcCCCeEEE-EE
Q 020021          111 NKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAE-------KCQGLLRVQG--RPAAAYDDQGLVFA-VA  179 (332)
Q Consensus       111 ~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~-~~  179 (332)
                      |..+..+..|...|..++.++ ++.+|+|||.||+||+||.+.-       ++.-++...+  .........+..++ ++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            455677888999999888876 4589999999999999997532       1122222111  11223334444444 45


Q ss_pred             eCCEEEEEECccCCCCCeeEEEec----CCCCCc-eeEEEc-CCCC-EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVG----GDISDA-NVVKFS-NDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  252 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~----~~~~~v-~~v~~s-~dg~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  252 (332)
                      .||.|++.++...+..........    .....+ ..-+|. .+++ .++.++..+.|..||.++....-+..... ..+
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-~hG 1196 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-RHG 1196 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-ccc
Confidence            689999999876432222111110    001111 222222 2344 78888999999999998766554444332 346


Q ss_pred             cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCC---eeEEEeccc----eEEEecccccc
Q 020021          253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPG---SLMFVTGSS----ELSFWIPDLSK  324 (332)
Q Consensus       253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~---~~~l~t~~~----d~~~w~~~~~~  324 (332)
                      .+++++.+|-++++++|+.-|.+-+||++-+..+.++ .++..++..|..+|-   ....++++.    ++.+|....+ 
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g- 1275 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG- 1275 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC-
Confidence            7889999999999999999999999999988888775 344477888887663   244555443    4999987663 


Q ss_pred             ccc
Q 020021          325 LGA  327 (332)
Q Consensus       325 ~~~  327 (332)
                      +++
T Consensus      1276 ~~~ 1278 (1431)
T KOG1240|consen 1276 LRQ 1278 (1431)
T ss_pred             cce
Confidence            443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.28  E-value=4.5e-10  Score=95.67  Aligned_cols=279  Identities=12%  Similarity=0.130  Sum_probs=162.9

Q ss_pred             eEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC-------
Q 020021           28 MSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-------   99 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~-------   99 (332)
                      -....-++.+.+++||||| .+|.+...|-.|.+|.+.+.++.. ++.....+..++|++++++.+..+....       
T Consensus        85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~  163 (447)
T KOG4497|consen   85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS  163 (447)
T ss_pred             EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence            3345566889999999999 566788899999999998876643 2233445678899999998776643211       


Q ss_pred             --------------------------CceeEEEEccCCceEEEeeccc-ccEEEEEecCCCCeEEEeeCCCcEEEEeCCC
Q 020021          100 --------------------------DESLRLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQRA  152 (332)
Q Consensus       100 --------------------------d~~v~v~d~~~~~~~~~~~~h~-~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~  152 (332)
                                                ++.+-|||---.-  +.+.-|. -.+..+.|+|.+.+++-|+.|+.+|+-+--+
T Consensus       164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley--kv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY--KVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT  241 (447)
T ss_pred             hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh--eeeeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence                                      2345556521111  1111122 3577788888888999999999888865433


Q ss_pred             ceEEEEEE-ecC--cee--EEE----cCCCeEE-EEEe---CCEEEEEECccC--CC----CCeeEEE----ecCCCCCc
Q 020021          153 EKCQGLLR-VQG--RPA--AAY----DDQGLVF-AVAF---GGYIRMFDARKY--EK----GPFDIFS----VGGDISDA  209 (332)
Q Consensus       153 ~~~~~~~~-~~~--~~~--~~~----~~~~~~~-~~~~---~~~i~vwd~~~~--~~----~~~~~~~----~~~~~~~v  209 (332)
                      =+....+- ...  .+.  ..+    ..-.... ..++   +-.-.+|.....  +.    ..++...    .......+
T Consensus       242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~  321 (447)
T KOG4497|consen  242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA  321 (447)
T ss_pred             eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence            33322220 000  000  000    0000000 0000   001111111100  00    0000000    00112356


Q ss_pred             eeEEEcCCCCEEEEEcCC--CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 020021          210 NVVKFSNDGRLMLLTTME--GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA  287 (332)
Q Consensus       210 ~~v~~s~dg~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~  287 (332)
                      .-++||+|.+++++..+.  +.+.+||++.-++-..+    ....++....|.|....|+.+.....++.|...-...+.
T Consensus       322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL----iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~  397 (447)
T KOG4497|consen  322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG  397 (447)
T ss_pred             ceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh----hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe
Confidence            778999999999987665  57999998765543333    234567778899998888877767789999876544443


Q ss_pred             EecCCCCCCceEEeCCCeeEEEeccce
Q 020021          288 SWMSFDTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       288 ~~~~~~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      .. .-.=.|..+.|.-+|..++-.+.|
T Consensus       398 vP-~~GF~i~~l~W~~~g~~i~l~~kD  423 (447)
T KOG4497|consen  398 VP-KKGFNIQKLQWLQPGEFIVLCGKD  423 (447)
T ss_pred             cC-CCCceeeeEEecCCCcEEEEEcCC
Confidence            32 222357889999999888888887

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1.1e-09  Score=99.42  Aligned_cols=236  Identities=17%  Similarity=0.235  Sum_probs=157.7

Q ss_pred             ceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccc-cEEE-EEecCCCCeEEEeeCCCcEEEEeCCCceE
Q 020021           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD-RVVS-LSLCSSKDCFISGSLDRTVLLWDQRAEKC  155 (332)
Q Consensus        78 ~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~-~V~~-v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~  155 (332)
                      ..+.+.++|+|.++++..  -+...|++||+.+-.  -.+..|.+ .+.. .-++.|-..++--..|++|.+-..- +. 
T Consensus        53 ast~ik~s~DGqY~lAtG--~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~-  126 (703)
T KOG2321|consen   53 ASTRIKVSPDGQYLLATG--TYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GR-  126 (703)
T ss_pred             ccceeEecCCCcEEEEec--ccCCceEEEEcccce--eeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ce-
Confidence            346788999999987664  367899999997643  23445543 3443 3445565666666778888875422 21 


Q ss_pred             EEEEEec--CceeEEEc-CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021          156 QGLLRVQ--GRPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (332)
Q Consensus       156 ~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i  232 (332)
                      .-.++.+  +. ...++ +..-++.++.+..|.-+++...   .+. .......+.+++|..++-..++++|+.+|.|..
T Consensus       127 hy~~RIP~~GR-Dm~y~~~scDly~~gsg~evYRlNLEqG---rfL-~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf  201 (703)
T KOG2321|consen  127 HYRTRIPKFGR-DMKYHKPSCDLYLVGSGSEVYRLNLEQG---RFL-NPFETDSGELNVVSINEEHGLLACGTEDGVVEF  201 (703)
T ss_pred             eeeeecCcCCc-cccccCCCccEEEeecCcceEEEEcccc---ccc-cccccccccceeeeecCccceEEecccCceEEE
Confidence            1111221  11 12333 3344666777778888887643   221 122223467899999999999999999999999


Q ss_pred             EEccCCeEeEEeeecCC---C-----CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCC--CCceEEeC
Q 020021          233 LDSFRGTLLSTYNVKPV---S-----RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT--EPPVIKWT  302 (332)
Q Consensus       233 ~d~~~~~~~~~~~~~~~---~-----~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~--~v~~l~~s  302 (332)
                      ||.+......++.....   +     ...++++.|+-||-.++.|..+|.+.|+|+.+.+++.. ..|..  +|..+.|.
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~  280 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQ  280 (703)
T ss_pred             ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeeccc
Confidence            99988766665543221   1     23478899999999999999999999999998776543 44543  56778887


Q ss_pred             CC--eeEEEeccce-EEEeccccccc
Q 020021          303 PG--SLMFVTGSSE-LSFWIPDLSKL  325 (332)
Q Consensus       303 p~--~~~l~t~~~d-~~~w~~~~~~~  325 (332)
                      +.  ...++|...- ++||+....+.
T Consensus       281 ~~~~q~~v~S~Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  281 DTDQQNKVVSMDKRILKIWDECTGKP  306 (703)
T ss_pred             ccCCCceEEecchHHhhhcccccCCc
Confidence            75  4556665544 99998866554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=9.8e-09  Score=95.52  Aligned_cols=223  Identities=13%  Similarity=0.099  Sum_probs=122.7

Q ss_pred             CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCE--EEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCC
Q 020021           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK  133 (332)
Q Consensus        56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~  133 (332)
                      +.|.+.|.+.++.. .+.........=.|+|+++.  +++.+...-...|.+.++.+++... +....+......|+|||
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence            35666676654433 34333333445589999986  3333332224578888998776433 33334445567999999


Q ss_pred             CeEEEeeC-CC----cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCC
Q 020021          134 DCFISGSL-DR----TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD  208 (332)
Q Consensus       134 ~~l~s~s~-Dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~  208 (332)
                      +.|+..+. +|    .+..|++..+..                         ....++.+               +....
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~-------------------------g~~~~lt~---------------~~~~~  282 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAI-------------------------GKPRRLLN---------------EAFGT  282 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCC-------------------------CcceEeec---------------CCCCC
Confidence            98876543 23    122233322100                         00000000               01112


Q ss_pred             ceeEEEcCCCCEEEEEc-CCCe--EEEEEccC-CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECC
Q 020021          209 ANVVKFSNDGRLMLLTT-MEGH--IHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVR  281 (332)
Q Consensus       209 v~~v~~s~dg~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~  281 (332)
                      ....+|||||+.|+..+ .+|.  |+++++.. +.....+.   .....+....|||||++|+..+.+   ..|++||+.
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~  359 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA  359 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            23568999999877655 4564  44444432 22222222   112334567899999999876543   369999998


Q ss_pred             CCceEEEecCCCCCCceEEeCCCeeEEEecc-----ceEEEecccccc
Q 020021          282 SGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-----SELSFWIPDLSK  324 (332)
Q Consensus       282 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~-----~d~~~w~~~~~~  324 (332)
                      +++. ..+......+....|+|||++++...     .++.+++.+..+
T Consensus       360 ~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        360 TGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             CCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            8765 33443334567799999998776432     235555554433

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.23  E-value=2e-09  Score=98.13  Aligned_cols=189  Identities=17%  Similarity=0.271  Sum_probs=138.2

Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc---cceeEEEEc-------------------cCCC-EEEEecCCCC
Q 020021           43 HKSSSYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFT-------------------SHPT-TVIYSSKNGW   99 (332)
Q Consensus        43 s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~---~~v~~~~~~-------------------~~~~-~~~~~s~~g~   99 (332)
                      +|...|+|....||.+||||+..++..+.+....   .......|.                   ..++ .++.+..   
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~---   78 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP---   78 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC---
Confidence            4556899999999999999999888766554221   111111111                   1112 2333432   


Q ss_pred             CceeEEEEccCCceEEEee--cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEE
Q 020021          100 DESLRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  177 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~--~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (332)
                      .+.|.+|++..++....+.  +|-+.|+++.++.+-..|.|++.|+.+.+|+....+.                      
T Consensus        79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~----------------------  136 (541)
T KOG4547|consen   79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI----------------------  136 (541)
T ss_pred             CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee----------------------
Confidence            4679999999988776665  6999999999998889999999999999999865532                      


Q ss_pred             EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v  257 (332)
                            +++|...               +..+.+++++|||..+++++  +.|.+||+.+.+.+..|.   +|..++..+
T Consensus       137 ------~~~~~~~---------------~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft---gh~s~v~t~  190 (541)
T KOG4547|consen  137 ------IRIWKEQ---------------KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT---GHGSPVRTL  190 (541)
T ss_pred             ------eeeeccC---------------CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec---CCCcceEEE
Confidence                  3444432               23467789999999888765  589999999999998887   677888888


Q ss_pred             EECCC-----CCEEEEE-cCCCcEEEEECCC
Q 020021          258 SFSPE-----GMFVISG-SGDGSVYAWSVRS  282 (332)
Q Consensus       258 ~~spd-----g~~l~sg-s~Dg~i~vWd~~~  282 (332)
                      +|..+     |.|+++. ..+.-|.+|-+..
T Consensus       191 ~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  191 SFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEEeccccccceeeeccccccceeEEEEEc
Confidence            88776     6666555 6677889997754

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.23  E-value=3.6e-10  Score=108.83  Aligned_cols=189  Identities=16%  Similarity=0.201  Sum_probs=141.1

Q ss_pred             cEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce------eEEEcCCCeEEEEE-eCCEEEEEECccCCCC
Q 020021          123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP------AAAYDDQGLVFAVA-FGGYIRMFDARKYEKG  195 (332)
Q Consensus       123 ~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~  195 (332)
                      .|....+.-..+.++.+..+..+-+||...+.....+....+.      ....+....+++++ .-+.|.+|+....+ .
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-~  167 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-K  167 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-C
Confidence            3444555667788999999999999998766655444333221      12223444555444 46899999976322 2


Q ss_pred             CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcE
Q 020021          196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  275 (332)
Q Consensus       196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i  275 (332)
                      +.   .+.||...+.++.+|.||+++++.++|..+++|++.+++.+.  -....|...++.+.|.|+  +++|+++|-++
T Consensus       168 p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~i~t~gedctc  240 (967)
T KOG0974|consen  168 PI---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--RIITVGEDCTC  240 (967)
T ss_pred             cc---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--eeEEeccceEE
Confidence            22   355788889999999999999999999999999999887664  122357888999999998  99999999999


Q ss_pred             EEEECCCCceEEEecCCC-CCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          276 YAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       276 ~vWd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      ++|+. +++.+..+..|. ..++.++..++..+.+|++.|  +++|+.
T Consensus       241 rvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  241 RVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             EEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence            99976 456666676665 568999999999999999988  666654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.22  E-value=4.5e-08  Score=100.18  Aligned_cols=253  Identities=12%  Similarity=0.191  Sum_probs=157.2

Q ss_pred             EEEECCC-CCEEEEEeCCCcEEEEEcCCCeeeEEeee-cc-------------cceeEEEEccCCCEEEEecCCCCCcee
Q 020021           39 SMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINS-KK-------------YGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        39 ~i~~s~d-g~~l~tgs~D~tv~iwd~~~~~~~~~~~~-~~-------------~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      .++++++ +.++++-+..+.|++||... ..+..+.. ..             .....+++.+++..++++..  ..+.|
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt--~n~~I  648 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT--ENHAL  648 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC--CCceE
Confidence            6788875 56778888889999999864 44433332 11             12456788887776666532  35679


Q ss_pred             EEEEccCCceEEEeecc-----------------cccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce
Q 020021          104 RLLSLHDNKYLRYFKGH-----------------HDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP  165 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h-----------------~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~  165 (332)
                      +++|..++. +.++.+-                 ...-..++++| ++..+++.+.++.|++||..++... .+..    
T Consensus       649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G----  722 (1057)
T PLN02919        649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG----  722 (1057)
T ss_pred             EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec----
Confidence            999987754 3333210                 11235789998 5667788888899999998665431 1110    


Q ss_pred             eEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccCCeEeEEe
Q 020021          166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTY  244 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~~~~~~  244 (332)
                                     ++.....+      +...   ..........++++|+|. ++++.+.++.|++||+.++......
T Consensus       723 ---------------~G~~~~~~------g~~~---~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        723 ---------------DGYERNLN------GSSG---TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             ---------------CCccccCC------CCcc---ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence                           11000000      0000   000112346789999997 6667778899999998876532110


Q ss_pred             eecC------------------CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC--------------
Q 020021          245 NVKP------------------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF--------------  292 (332)
Q Consensus       245 ~~~~------------------~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~--------------  292 (332)
                      ...+                  ........++++|+|+.+++-+.++.|++||..++... ++...              
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~  857 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQ  857 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccc
Confidence            0000                  00112347899999999999999999999999876543 22211              


Q ss_pred             CCCCceEEeCCCeeEEEeccce--EEEeccccccc
Q 020021          293 DTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKL  325 (332)
Q Consensus       293 ~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~~  325 (332)
                      -..+..|+++|+|+++++.+.+  +++|+.+..++
T Consensus       858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            1246779999999988887655  77887765443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=1.8e-09  Score=93.84  Aligned_cols=237  Identities=12%  Similarity=0.168  Sum_probs=154.4

Q ss_pred             ceeEEEEccCCCE-EEEecCCCCCceeEEEEccCCceEE------EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeC
Q 020021           78 GVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNKYLR------YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ  150 (332)
Q Consensus        78 ~v~~~~~~~~~~~-~~~~s~~g~d~~v~v~d~~~~~~~~------~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~  150 (332)
                      .+..++|..+++. ++.+.+.  +..+...+++......      ....-+++|.++...  ...|++|-.+|.+.+|..
T Consensus        57 ris~l~~~~d~~tevl~~r~~--~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   57 RISSLLFGVDGETEVLNARSA--DDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhheeecCCceeEeecccc--CcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence            4555666655543 3333211  3344444544433222      233455666666543  357899999999999998


Q ss_pred             CCce-----EEEEEEecCceeEEEcC-CCeEEE-EEeC--CEEEEEECccCCCCCeeEEEecCC------CCCceeEEEc
Q 020021          151 RAEK-----CQGLLRVQGRPAAAYDD-QGLVFA-VAFG--GYIRMFDARKYEKGPFDIFSVGGD------ISDANVVKFS  215 (332)
Q Consensus       151 ~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~-~~~~--~~i~vwd~~~~~~~~~~~~~~~~~------~~~v~~v~~s  215 (332)
                      +.+.     .......++.....-.+ ...+++ ++..  +.+++||+.... ..+....+..+      +.-++.+.|-
T Consensus       133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             cCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCCccccceeeeeeccceec
Confidence            7332     22222222222222222 223444 5555  689999987541 11110000000      1234667888


Q ss_pred             CC--CCEEEEEcCCCeEEEEEccCCeE-eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEE-ecC
Q 020021          216 ND--GRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS-WMS  291 (332)
Q Consensus       216 ~d--g~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~-~~~  291 (332)
                      ++  ...+++++.-+.+++||.+.+.. +..+.   ...+++.++...|+|+++++|..-|.+..||++.++.+.. +.+
T Consensus       212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd---~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg  288 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD---FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG  288 (412)
T ss_pred             CCCCCceEEEEecceeEEEecCcccCcceeEec---cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence            87  78999999999999999876543 33333   3457788899999999999999999999999999888766 788


Q ss_pred             CCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          292 FDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       292 ~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                      ..+.+..|--+|+...+++++-|  +++++.+.
T Consensus       289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            89999999999999999999998  77777766

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.21  E-value=1.6e-09  Score=98.76  Aligned_cols=184  Identities=10%  Similarity=0.158  Sum_probs=134.1

Q ss_pred             CCCCeEEEeeCCCcEEEEeCCCceEEEEEEec----Cce---eEEE------------------cCCCeEEE-EEeCCEE
Q 020021          131 SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRP---AAAY------------------DDQGLVFA-VAFGGYI  184 (332)
Q Consensus       131 ~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~----~~~---~~~~------------------~~~~~~~~-~~~~~~i  184 (332)
                      |...+||....||.+||||...++....+...    +..   .+..                  ..+...+. +...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            44578999999999999999888765555321    100   0000                  11223333 3346888


Q ss_pred             EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC
Q 020021          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (332)
Q Consensus       185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~  264 (332)
                      -+|++...+.  .-.+.-+.|...++++..+.+-..|-+++.|+++-.|+...+..+..+..   ....+..++.+|||.
T Consensus        83 ~~ys~~~g~i--t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   83 LLYSVAGGEI--TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISPDGK  157 (541)
T ss_pred             EEEEecCCeE--EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcCCCC
Confidence            8888754321  11234456778899988898999999999999999999988888777653   345566789999999


Q ss_pred             EEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCC-----eeEEEec-cc--eEEEeccc
Q 020021          265 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-----SLMFVTG-SS--ELSFWIPD  321 (332)
Q Consensus       265 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~-----~~~l~t~-~~--d~~~w~~~  321 (332)
                      .+++||  +.|++||+++++.+.+|.+|.++|.+++|-.+     |.++.++ ..  ...+|..+
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            999997  67999999999999999999999999999776     5555543 33  37777554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=5.4e-10  Score=99.56  Aligned_cols=207  Identities=9%  Similarity=0.116  Sum_probs=139.7

Q ss_pred             EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-e-----eEEEcCCCeEEEEEeCCEEEEE
Q 020021          114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-P-----AAAYDDQGLVFAVAFGGYIRMF  187 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~i~vw  187 (332)
                      ...|..|.+.|..|.|...|..++|+|.|..|.+||+..++....+..... +     ..-+..+..++.++.||.+++-
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            456889999999999999999999999999999999877665443322111 0     1112234456777789999887


Q ss_pred             ECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC---cceEEEECCCC
Q 020021          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN---STLEASFSPEG  263 (332)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~v~~spdg  263 (332)
                      .+..... ......++.|...+..++.-|+. ..+.+++.|+.+.-+|++.+..-..+.......+   ....++..|-+
T Consensus       215 ~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  215 EILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeccccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            6543211 11133455666788888888876 4578899999999999987765444432222223   33467888866


Q ss_pred             C-EEEEEcCCCcEEEEECCCCce------EEEec------CCCCCCceEEeCCCe-eEEEeccc-eEEEeccc
Q 020021          264 M-FVISGSGDGSVYAWSVRSGKE------VASWM------SFDTEPPVIKWTPGS-LMFVTGSS-ELSFWIPD  321 (332)
Q Consensus       264 ~-~l~sgs~Dg~i~vWd~~~~~~------~~~~~------~~~~~v~~l~~sp~~-~~l~t~~~-d~~~w~~~  321 (332)
                      . ++|+|+.|-.++++|...-..      +..+.      ...-.|++++|+.++ .+|++-.. ++.++..+
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS  366 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence            5 889999999999999864221      22221      234568999999654 56666443 47777543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.12  E-value=1.1e-06  Score=76.23  Aligned_cols=267  Identities=13%  Similarity=0.178  Sum_probs=167.8

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCC--CeeeEE--eeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTA--ATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D---~tv~iwd~~~--~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ..+.+.++=|.|+|++++|.++..+   +.|-.|.++.  |+....  ......+-.-+++.++++.++.+.-.  -+.|
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~--~g~v  113 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH--SGSV  113 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc--CceE
Confidence            4456678889999999988877655   7888887764  443221  11112223568899999988887642  4789


Q ss_pred             EEEEccC-CceEE--Eeeccccc----------EEEEEecCCCCeEEEee--CCCcEEEEeCCCceEEEEEEec-----C
Q 020021          104 RLLSLHD-NKYLR--YFKGHHDR----------VVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQ-----G  163 (332)
Q Consensus       104 ~v~d~~~-~~~~~--~~~~h~~~----------V~~v~~~~~~~~l~s~s--~Dg~i~iWd~~~~~~~~~~~~~-----~  163 (332)
                      .++-++. |....  .+..|.+.          +-...+.|++++|++..  .| .|.++++..++....-...     +
T Consensus       114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~G  192 (346)
T COG2706         114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAG  192 (346)
T ss_pred             EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCCCC
Confidence            9998865 33211  12234444          77888999999998885  44 4688888876654322211     1


Q ss_pred             ceeEEEcCCCeEEEEEe--CCEEEEEECccCCCCCeeEEEe----c---CCCCCceeEEEcCCCCEEEEEcC-CCeEEEE
Q 020021          164 RPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSV----G---GDISDANVVKFSNDGRLMLLTTM-EGHIHVL  233 (332)
Q Consensus       164 ~~~~~~~~~~~~~~~~~--~~~i~vwd~~~~~~~~~~~~~~----~---~~~~~v~~v~~s~dg~~l~~~~~-dg~i~i~  233 (332)
                      .--.+|++++.++.+..  +++|.+|..... .+.+...+.    .   .......++.++|||++|.++.. ...|.+|
T Consensus       193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f  271 (346)
T COG2706         193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF  271 (346)
T ss_pred             cceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            11357888888776664  699999987653 222221110    0   01234577899999999877642 2366666


Q ss_pred             Ecc--CCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC-cEEEEECC--CCceEEEec-CCCCCCceEEeC
Q 020021          234 DSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVR--SGKEVASWM-SFDTEPPVIKWT  302 (332)
Q Consensus       234 d~~--~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg-~i~vWd~~--~~~~~~~~~-~~~~~v~~l~~s  302 (332)
                      .+.  +++ +......+.+........|+|+|++|+.+..|+ +|.++.+.  +|+.-.... .....+.||.|.
T Consensus       272 ~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         272 SVDPDGGK-LELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             EEcCCCCE-EEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            553  343 333333344445566788999999999998776 78888774  444322222 233456777775

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.11  E-value=8.9e-10  Score=111.28  Aligned_cols=200  Identities=17%  Similarity=0.300  Sum_probs=150.2

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee-cccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      .+.|-..|.++.=+|...+.+||+.|+.+++|.-..+..+..+.. .+..|+.+.|+..|+.+-.+.  | |+.+.+|..
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d--~-dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVD--G-DGDLSLWQA 2280 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeec--c-CCceeeccc
Confidence            444556677777788889999999999999999887777766643 336788889999988776654  2 888999988


Q ss_pred             cCCceEEEeecccccEEEEEecCCCCeEEEee---CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEE
Q 020021          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR  185 (332)
Q Consensus       109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s---~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  185 (332)
                      . .++....+.|........|-.  ..+++++   .++.+.+||..-......+                          
T Consensus      2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-------------------------- 2331 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-------------------------- 2331 (2439)
T ss_pred             C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee--------------------------
Confidence            6 456667788988888888875  5567765   3678888884221110000                          


Q ss_pred             EEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (332)
Q Consensus       186 vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~  265 (332)
                                     . ..|...++.+++.|..+++++|+.+|.|.+||++..++++++..            +. ...+
T Consensus      2332 ---------------~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------------~~-~~~~ 2382 (2439)
T KOG1064|consen 2332 ---------------H-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------LD-TREY 2382 (2439)
T ss_pred             ---------------e-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------------hh-hhhe
Confidence                           0 12445678899999999999999999999999998887765531            33 5678


Q ss_pred             EEEEcCCCcEEEEECCCCceEEEec
Q 020021          266 VISGSGDGSVYAWSVRSGKEVASWM  290 (332)
Q Consensus       266 l~sgs~Dg~i~vWd~~~~~~~~~~~  290 (332)
                      +.+|+..|.|+||++..-..++++.
T Consensus      2383 f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             eeccCcccceEEEEccccchhhcCc
Confidence            9999999999999998876666653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.11  E-value=3.4e-09  Score=90.85  Aligned_cols=249  Identities=12%  Similarity=0.215  Sum_probs=159.4

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEc-CCCeeeEEeee-cccceeEEEEccCCCEEEEecCCCCC
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV-TAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      ...+...++||.+.|+....-|-.+-+.+.+.|.++|||-- +.++--..+.. -+.+++...+.+....++.+-.   +
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---n   89 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---N   89 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe---c
Confidence            34556678899999999888888889999999999999943 22221111111 1234555556555555555543   2


Q ss_pred             ceeEEE----EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEe-CCCceEEEEEEecCceeEEEcCCCeE
Q 020021          101 ESLRLL----SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD-QRAEKCQGLLRVQGRPAAAYDDQGLV  175 (332)
Q Consensus       101 ~~v~v~----d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd-~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (332)
                      +++.-+    |.+....++....|..+|..+-|+-....+++.+.|+.+. |. .+.++.+.-......+.    +....
T Consensus        90 gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t----~~~~d  164 (404)
T KOG1409|consen   90 GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPAS----ALQFD  164 (404)
T ss_pred             ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCC----CCcee
Confidence            233333    3344456677788999999999999899999999998854 54 34443333222211110    11111


Q ss_pred             EEEE----eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC
Q 020021          176 FAVA----FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  251 (332)
Q Consensus       176 ~~~~----~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  251 (332)
                      +..+    ..+.|.+-.+.....+  .+....++...+.+.++.|....+.++..|..+.+||+-..+-+ .++.. .|.
T Consensus       165 ~~~~fvGd~~gqvt~lr~~~~~~~--~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~-gh~  240 (404)
T KOG1409|consen  165 ALYAFVGDHSGQITMLKLEQNGCQ--LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQ-GHN  240 (404)
T ss_pred             eEEEEecccccceEEEEEeecCCc--eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeec-cch
Confidence            1122    2345544433222112  23455577788999999999999999999999999998543322 22221 355


Q ss_pred             CcceEEEECCCCCEEEEEcCCCcEEEEECCCC
Q 020021          252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       252 ~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~  283 (332)
                      ..+..+..-+--+.+.++++||-|-+||+...
T Consensus       241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            66666666677789999999999999999653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.10  E-value=4.1e-10  Score=101.85  Aligned_cols=210  Identities=18%  Similarity=0.325  Sum_probs=145.3

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC-------CCeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT-------AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      ..|.||+..|..|+--.+.+.+++++.|+||++|.+.       +..|..++..|..+|..+.|-.+-+.++++     |
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-----D  803 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-----D  803 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-----c
Confidence            4588999999998876677889999999999999875       345888999999999999998888777754     6


Q ss_pred             ceeEEEEccCCceEEEee-----cccccEEEEEecCCCCeEEEe-eCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCe
Q 020021          101 ESLRLLSLHDNKYLRYFK-----GHHDRVVSLSLCSSKDCFISG-SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL  174 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~~~-----~h~~~V~~v~~~~~~~~l~s~-s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  174 (332)
                      +-+.+||.-.+..+..+.     +.-..|.++. +-+...++.+ +...|+++.|.+.......++.             
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV-------------  869 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKV-------------  869 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEe-------------
Confidence            779999975555433111     1122333332 1133344444 6788899988776543322221             


Q ss_pred             EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021          175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  254 (332)
Q Consensus       175 ~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  254 (332)
                                  -+             ..+...-+++++..+.|..++++-.+|+|.+.|.++|+++..++-  .... .
T Consensus       870 ------------cn-------------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp--mecd-l  921 (1034)
T KOG4190|consen  870 ------------CN-------------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP--MECD-L  921 (1034)
T ss_pred             ------------cc-------------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc--ccch-h
Confidence                        10             011223467889999999999999999999999999998865541  1100 0


Q ss_pred             eEEEECCCCCEEEEEcCCCcEEE-EECCCCce
Q 020021          255 LEASFSPEGMFVISGSGDGSVYA-WSVRSGKE  285 (332)
Q Consensus       255 ~~v~~spdg~~l~sgs~Dg~i~v-Wd~~~~~~  285 (332)
                      .. .-.|..+.|+....|.++-| |....+..
T Consensus       922 lq-laapsdq~L~~saldHslaVnWhaldgim  952 (1034)
T KOG4190|consen  922 LQ-LAAPSDQALAQSALDHSLAVNWHALDGIM  952 (1034)
T ss_pred             hh-hcCchhHHHHhhcccceeEeeehhcCCee
Confidence            01 12477888888888999999 97766544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.10  E-value=3.2e-07  Score=84.28  Aligned_cols=230  Identities=15%  Similarity=0.137  Sum_probs=136.1

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~  125 (332)
                      +..++.++.|+.+..+|..+|+.+...............  .+..++....   ++.+..+|.++|+.+..+......+.
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~~~~~~  179 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTN---DGRLTALDAATGERLWTYSRVTPALT  179 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECC---CCeEEEEEcCCCceeeEEccCCCcee
Confidence            456666777788888887777776544322111000011  2334554432   67899999999988776654332211


Q ss_pred             -----EEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc------------eeEEEcCCCeEEEEEeCCEEEEEE
Q 020021          126 -----SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR------------PAAAYDDQGLVFAVAFGGYIRMFD  188 (332)
Q Consensus       126 -----~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~i~vwd  188 (332)
                           ...+  .+..++.+..++.+..+|.++++..-.......            .....-.++.++..+.++.+..+|
T Consensus       180 ~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d  257 (377)
T TIGR03300       180 LRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD  257 (377)
T ss_pred             ecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence                 1111  234677888889999999988876543321100            000011245677777789999999


Q ss_pred             CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (332)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s  268 (332)
                      ..+.+.    .+....  ....  ....++..+..++.+|.++.+|..+|+.+-.....  .........  ..+.+|+.
T Consensus       258 ~~tG~~----~W~~~~--~~~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~--~~~~~ssp~--i~g~~l~~  325 (377)
T TIGR03300       258 LRSGRV----LWKRDA--SSYQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDEL--KYRQLTAPA--VVGGYLVV  325 (377)
T ss_pred             CCCCcE----EEeecc--CCcc--CceEeCCEEEEECCCCeEEEEECCCCcEEEccccc--cCCccccCE--EECCEEEE
Confidence            865421    122111  1111  12234566777789999999999999876443211  111111111  14678899


Q ss_pred             EcCCCcEEEEECCCCceEEEecCCCC
Q 020021          269 GSGDGSVYAWSVRSGKEVASWMSFDT  294 (332)
Q Consensus       269 gs~Dg~i~vWd~~~~~~~~~~~~~~~  294 (332)
                      ++.||.++++|..+++.+..+..+..
T Consensus       326 ~~~~G~l~~~d~~tG~~~~~~~~~~~  351 (377)
T TIGR03300       326 GDFEGYLHWLSREDGSFVARLKTDGS  351 (377)
T ss_pred             EeCCCEEEEEECCCCCEEEEEEcCCC
Confidence            99999999999999999887765553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=2.2e-07  Score=86.05  Aligned_cols=194  Identities=7%  Similarity=0.003  Sum_probs=116.8

Q ss_pred             cEEEEEECCCCCE-EEEEeCC---CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021           36 RISSMDFHKSSSY-LVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (332)
Q Consensus        36 ~I~~i~~s~dg~~-l~tgs~D---~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~  111 (332)
                      .+..-.|+|||+. ++-.+.+   ..|.++|+.+++...... .........|+|+++.++......-+..+.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778899999984 6654544   457888988886644332 3333445679999998877654333667888898887


Q ss_pred             ceEEEeecccccEEEEEecCCCCeEEEeeC-CC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE
Q 020021          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD  188 (332)
Q Consensus       112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd  188 (332)
                      +.. .+..+........|+|||+.++-.+. .+  .|.+.|+.++...                            ++  
T Consensus       268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~----------------------------rl--  316 (419)
T PRK04043        268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE----------------------------QV--  316 (419)
T ss_pred             cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE----------------------------eC--
Confidence            643 34434433345579999987765553 22  2333333322210                            00  


Q ss_pred             CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC---------CeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (332)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~  259 (332)
                                  ...+.    ....+||||+.++.....         ..|.+.|+.++... .+..  .  .......|
T Consensus       317 ------------t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~--~--~~~~~p~~  375 (419)
T PRK04043        317 ------------VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA--N--GVNQFPRF  375 (419)
T ss_pred             ------------ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC--C--CCcCCeEE
Confidence                        00011    113789999988776543         37888898877643 2221  1  12224689


Q ss_pred             CCCCCEEEEEcCCC---cEEEEECCC
Q 020021          260 SPEGMFVISGSGDG---SVYAWSVRS  282 (332)
Q Consensus       260 spdg~~l~sgs~Dg---~i~vWd~~~  282 (332)
                      +|||++|+-.+.++   .+.+.++..
T Consensus       376 SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        376 SSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCCCCEEEEEEccCCcEEEEEEecCC
Confidence            99999887765433   466667643

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=5.1e-10  Score=101.26  Aligned_cols=200  Identities=13%  Similarity=0.222  Sum_probs=134.6

Q ss_pred             EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC-------CceEEEeecccccEEEEEecCCCCeEEEeeCC
Q 020021           70 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD  142 (332)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~-------~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~D  142 (332)
                      ..+.+|+..|..+..-.+.+.++++++   |.+|++|.++.       ..+..+++.|+.+|..+.|-.+.+.++|+  |
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASk---DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D  803 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASK---DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D  803 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccC---CceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence            456667666666555555566676665   89999999853       34788999999999999999998888765  9


Q ss_pred             CcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEE
Q 020021          143 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML  222 (332)
Q Consensus       143 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  222 (332)
                      |-|.+||.--++.....                          .|+-+....            ..+ .+--+-|..++.
T Consensus       804 ~giHlWDPFigr~Laq~--------------------------~dapk~~a~------------~~i-kcl~nv~~~ili  844 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQM--------------------------EDAPKEGAG------------GNI-KCLENVDRHILI  844 (1034)
T ss_pred             CcceeecccccchhHhh--------------------------hcCcccCCC------------cee-EecccCcchhee
Confidence            99999996433322100                          000000000            000 011111333333


Q ss_pred             -EEcCCCeEEEEEccCCeEeEEeeec--CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceE
Q 020021          223 -LTTMEGHIHVLDSFRGTLLSTYNVK--PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVI  299 (332)
Q Consensus       223 -~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l  299 (332)
                       .++.+.+|+++|.+.++...+++..  +.++..+.+++..|.|+.+|.|=..|+|-+.|.++|+.+.++.........+
T Consensus       845 AgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllql  924 (1034)
T KOG4190|consen  845 AGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQL  924 (1034)
T ss_pred             eeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhh
Confidence             3478889999999999888777654  4455566788999999999999999999999999999888776655555445


Q ss_pred             EeCCCeeEEEeccce
Q 020021          300 KWTPGSLMFVTGSSE  314 (332)
Q Consensus       300 ~~sp~~~~l~t~~~d  314 (332)
                      + .|..+.|+....|
T Consensus       925 a-apsdq~L~~sald  938 (1034)
T KOG4190|consen  925 A-APSDQALAQSALD  938 (1034)
T ss_pred             c-CchhHHHHhhccc
Confidence            4 4555555444333

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.03  E-value=8e-10  Score=66.15  Aligned_cols=38  Identities=26%  Similarity=0.535  Sum_probs=36.2

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD   62 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd   62 (332)
                      ++.++|.+|+++|++|+|+|++++|+|++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46789999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.03  E-value=4e-06  Score=72.91  Aligned_cols=270  Identities=13%  Similarity=0.192  Sum_probs=166.9

Q ss_pred             CCcEEEEEcCCC--eee-EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC--CceEE----EeecccccEE
Q 020021           55 DESIRLYDVTAA--TCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--NKYLR----YFKGHHDRVV  125 (332)
Q Consensus        55 D~tv~iwd~~~~--~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~--~~~~~----~~~~h~~~V~  125 (332)
                      +.-|.+|++.+.  +.- ..+..+...++-++++++.+.++.+...|-++.|-.|.+..  |....    .+.|+  +-.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--CCe
Confidence            577999988732  221 11223344567789999998888877666567777777664  43211    11222  227


Q ss_pred             EEEecCCCCeEEEeeC-CCcEEEEeCCC-ceEEEEE---Eec-----------CceeEEEcCCCeEEEEEe--CCEEEEE
Q 020021          126 SLSLCSSKDCFISGSL-DRTVLLWDQRA-EKCQGLL---RVQ-----------GRPAAAYDDQGLVFAVAF--GGYIRMF  187 (332)
Q Consensus       126 ~v~~~~~~~~l~s~s~-Dg~i~iWd~~~-~~~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~--~~~i~vw  187 (332)
                      .+++++++++|+++.. -|.|.+.-++. +......   ...           ..-.+.+.|++.++.+..  ...|.+|
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            7899999999988875 46888887754 3332221   111           112456667776555443  3689999


Q ss_pred             ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEE-EEEcCCCeEEEEEccC--CeE--eEEeee---cCCCCCcceEEEE
Q 020021          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFR--GTL--LSTYNV---KPVSRNSTLEASF  259 (332)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~~--~~~--~~~~~~---~~~~~~~~~~v~~  259 (332)
                      ++......+.....+ ..-..-+-++|+|+|++. +++-.+++|-+|....  ++.  ++++..   .....+...++..
T Consensus       173 ~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi  251 (346)
T COG2706         173 DLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI  251 (346)
T ss_pred             EcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence            987443333222222 122355779999999986 4566789999999866  322  222211   1223445567889


Q ss_pred             CCCCCEEEEEcC-CCcEEEEECCCC-ceE---EEecCCCCCCceEEeCCCeeEEEeccce---EEEe--ccccccccc
Q 020021          260 SPEGMFVISGSG-DGSVYAWSVRSG-KEV---ASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFW--IPDLSKLGA  327 (332)
Q Consensus       260 spdg~~l~sgs~-Dg~i~vWd~~~~-~~~---~~~~~~~~~v~~l~~sp~~~~l~t~~~d---~~~w--~~~~~~~~~  327 (332)
                      +|||+||.+... ...|-++.+... ..+   .....+...+....|+|++++|+.+..+   +.++  ++...+|.+
T Consensus       252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence            999999998732 227888887542 222   2334555557889999999999988764   5555  455555544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.01  E-value=3.3e-09  Score=99.03  Aligned_cols=279  Identities=20%  Similarity=0.306  Sum_probs=174.0

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeeeEEeeec--ccceeEEEEccCCCE---EEEecCCCCCceeEEEE
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSK--KYGVDLVCFTSHPTT---VIYSSKNGWDESLRLLS  107 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~---~~~~s~~g~d~~v~v~d  107 (332)
                      .+++.+++++|.|+-+|.++.-| +.+-|+.. ++...-+ .|  .-.|..+-|++++..   ++..+    ...-.+|+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts----~qkaiiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTS----NQKAIIWN   97 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecC----cchhhhhh
Confidence            46788899999999998888776 44557753 2221111 12  122455667776653   33322    34456788


Q ss_pred             ccC---CceEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEE---ecCceeEEEcC-CCeEEEEE
Q 020021          108 LHD---NKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYDD-QGLVFAVA  179 (332)
Q Consensus       108 ~~~---~~~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~  179 (332)
                      +.-   ...-..+.||...|+.+-|+|+ ...+++++-|-.+..||+++...-.-..   ....+.+.+.. ++.+++.+
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass  177 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS  177 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence            643   2234567899999999999995 5689999999999999998765321111   11233344443 55677777


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~  258 (332)
                      .++.|++||.|....   ....+.++.+.++.+.|..- -..+.+++.|++|+.||..+.........  ....+++.-.
T Consensus       178 hg~~i~vwd~r~gs~---pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r  252 (1081)
T KOG0309|consen  178 HGNDIFVWDLRKGST---PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV--TTNFPIWRGR  252 (1081)
T ss_pred             cCCceEEEeccCCCc---ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec--cccCcceecc
Confidence            788999999987543   23344456677777777643 35678899999999999876543222221  1223445555


Q ss_pred             ECCCC--CEEEEEcC---------CCcEEEEECCCC-ceEEEecCCCCCCceEEeCCC----------eeEEEeccce--
Q 020021          259 FSPEG--MFVISGSG---------DGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPG----------SLMFVTGSSE--  314 (332)
Q Consensus       259 ~spdg--~~l~sgs~---------Dg~i~vWd~~~~-~~~~~~~~~~~~v~~l~~sp~----------~~~l~t~~~d--  314 (332)
                      |-|=|  .++.---.         +..-..|++.++ +.++++.+|+..|...-|...          .-+|+|=|.|  
T Consensus       253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~  332 (1081)
T KOG0309|consen  253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT  332 (1081)
T ss_pred             ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence            55533  22221111         222334554433 458999999998877777442          2489998887  


Q ss_pred             EEEeccccc
Q 020021          315 LSFWIPDLS  323 (332)
Q Consensus       315 ~~~w~~~~~  323 (332)
                      +++|-.+.+
T Consensus       333 lrlWpI~~~  341 (1081)
T KOG0309|consen  333 LRLWPIDSQ  341 (1081)
T ss_pred             eEeeeccHH
Confidence            788865443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.00  E-value=1.6e-08  Score=86.88  Aligned_cols=266  Identities=15%  Similarity=0.234  Sum_probs=163.0

Q ss_pred             CcEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCe-----------------------------------eeEEe-eecc
Q 020021           35 GRISSMDFHKSS--SYLVTASDDESIRLYDVTAAT-----------------------------------CLKTI-NSKK   76 (332)
Q Consensus        35 ~~I~~i~~s~dg--~~l~tgs~D~tv~iwd~~~~~-----------------------------------~~~~~-~~~~   76 (332)
                      ..|+.|.|.+++  ..++....|++|++|.+....                                   |.+.+ .+|.
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            568889998776  457788999999999874211                                   11112 2456


Q ss_pred             cceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc-e--EEEeec-----ccccEEEEEecC-CCCeEEEeeCCCcEEE
Q 020021           77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-Y--LRYFKG-----HHDRVVSLSLCS-SKDCFISGSLDRTVLL  147 (332)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~-~--~~~~~~-----h~~~V~~v~~~~-~~~~l~s~s~Dg~i~i  147 (332)
                      +.+.++++..+...++++-    |-.|.+|+++--. .  +..++.     -+.-|++..|+| .-+.|+..|..|+|++
T Consensus       165 yhiNSIS~NsD~Et~lSAD----dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSAD----DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             eEeeeeeecCccceEeecc----ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            6677888888888877653    6789999876422 1  223333     345688999999 4678999999999999


Q ss_pred             EeCCCce-EEE---EEEec--------------CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCC----
Q 020021          148 WDQRAEK-CQG---LLRVQ--------------GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD----  205 (332)
Q Consensus       148 Wd~~~~~-~~~---~~~~~--------------~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~----  205 (332)
                      -|++... |..   .+..+              ......+++.|.++..-.--+|++||+.... .+...+.+...    
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~-~pv~t~~vh~~lr~k  319 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA-KPVETYPVHEYLRSK  319 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC-CcceEEeehHhHHHH
Confidence            9998432 111   11111              1123566788888877666899999985433 33433333211    


Q ss_pred             ---------CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC-cceEEEECCCCCEEEEEcCCCcE
Q 020021          206 ---------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN-STLEASFSPEGMFVISGSGDGSV  275 (332)
Q Consensus       206 ---------~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~v~~spdg~~l~sgs~Dg~i  275 (332)
                               ..+-..|++|.++.++++|+-..-.++++...|.... +.......+ ....+   +.-+.+.+++.....
T Consensus       320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d-~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~  395 (433)
T KOG1354|consen  320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED-FTLEASRKNMKPRKV---LKLRLVSSSGKRKRD  395 (433)
T ss_pred             HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCccee-ecccccccCCccccc---ccceeeecCCCcccc
Confidence                     1233568999999999999999999999977665432 221111111 11111   122444455544432


Q ss_pred             EEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc-ceEEE
Q 020021          276 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-SELSF  317 (332)
Q Consensus       276 ~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~-~d~~~  317 (332)
                      .+|       +-. ..+...+.+.+|+|..+.++.+. ..+.+
T Consensus       396 ~~~-------vd~-ldf~kkilh~aWhp~en~ia~aatnnlyi  430 (433)
T KOG1354|consen  396 EIS-------VDA-LDFRKKILHTAWHPKENSIAVAATNNLYI  430 (433)
T ss_pred             ccc-------cch-hhhhhHHHhhccCCccceeeeeecCceEE
Confidence            222       111 12334566788999887666543 33444

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.00  E-value=1.2e-08  Score=87.58  Aligned_cols=217  Identities=16%  Similarity=0.260  Sum_probs=143.5

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEc-CCCe-------------------------
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV-TAAT-------------------------   67 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~-~~~~-------------------------   67 (332)
                      +.+.|++- ++...+....|++.|+.+-|+....++++.+.|+.+ .|-. +.+.                         
T Consensus        95 fs~sedfn-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd  172 (404)
T KOG1409|consen   95 FALSEDFN-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDALYAFVGD  172 (404)
T ss_pred             EEhhhhhh-hcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence            55666554 556677888999999999999888999999999875 3422 2211                         


Q ss_pred             ----------------eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc-eEEEeecccccEEEEEec
Q 020021           68 ----------------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-YLRYFKGHHDRVVSLSLC  130 (332)
Q Consensus        68 ----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~-~~~~~~~h~~~V~~v~~~  130 (332)
                                      .+.++.+|...+.+++|.+....+++++.   |..+.+||+..++ ....+.+|.+.|..+...
T Consensus       173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~---d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS---DHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc---cCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence                            12245566667778888888888887765   7899999997655 356789999999999988


Q ss_pred             CCCCeEEEeeCCCcEEEEeCCCceEEEE--E---------Ee------------------c-----C--ceeEEEcCCCe
Q 020021          131 SSKDCFISGSLDRTVLLWDQRAEKCQGL--L---------RV------------------Q-----G--RPAAAYDDQGL  174 (332)
Q Consensus       131 ~~~~~l~s~s~Dg~i~iWd~~~~~~~~~--~---------~~------------------~-----~--~~~~~~~~~~~  174 (332)
                      +.-++++|++.||.|.+||++.......  +         +.                  +     +  .+....+....
T Consensus       250 ~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~  329 (404)
T KOG1409|consen  250 QHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSS  329 (404)
T ss_pred             hhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccc
Confidence            8889999999999999999864332100  0         00                  0     0  00011112222


Q ss_pred             EEEEEeCCEEEEEECcc-----CCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC
Q 020021          175 VFAVAFGGYIRMFDARK-----YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (332)
Q Consensus       175 ~~~~~~~~~i~vwd~~~-----~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~  237 (332)
                      +...++.-.+|+-|.-.     ..+.++.++... + ..+..+.+-.+-..+++++.|+.|+|||++.
T Consensus       330 ~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~-tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  330 YPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-K-TGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             cccccceeEEEEecccchhhhcCCCCcccccccc-c-cceeEEEhhhhccceeecCCceEEEEEechh
Confidence            33334444555554321     111223222211 1 3567777777778899999999999999753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.99  E-value=1.1e-06  Score=80.82  Aligned_cols=227  Identities=17%  Similarity=0.096  Sum_probs=136.5

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~  125 (332)
                      +..+..++.++.|.-+|..+|+.+-............  ..++..++.++.   ++.+..+|.++|+.+...... +.+.
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p--~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~-~~~~  138 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGV--GADGGLVFVGTE---KGEVIALDAEDGKELWRAKLS-SEVL  138 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccce--EEcCCEEEEEcC---CCEEEEEECCCCcEeeeeccC-ceee
Confidence            6788889999999999999999876554332111111  123556666543   678999999999877654422 2222


Q ss_pred             EEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-------eEEEcCCCeEEEEEeCCEEEEEECccCCCCCee
Q 020021          126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-------AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD  198 (332)
Q Consensus       126 ~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~  198 (332)
                      +.... .++.++.++.|+.+..||.++++.+-........       .... .++.++.+..++.+..+|.++.+..  -
T Consensus       139 ~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~--W  214 (377)
T TIGR03300       139 SPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPL--W  214 (377)
T ss_pred             cCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEe--e
Confidence            21111 3456777788999999999988876554432211       1111 1345555556788888887654311  0


Q ss_pred             EEEecCCCC--C---ceeEEEcC--CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC
Q 020021          199 IFSVGGDIS--D---ANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  271 (332)
Q Consensus       199 ~~~~~~~~~--~---v~~v~~s~--dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~  271 (332)
                      .........  .   ...+.-+|  .+..+..++.+|.++.+|..+|+.+-.....    . .  .....++..++.++.
T Consensus       215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~----~-~--~~p~~~~~~vyv~~~  287 (377)
T TIGR03300       215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS----S-Y--QGPAVDDNRLYVTDA  287 (377)
T ss_pred             eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC----C-c--cCceEeCCEEEEECC
Confidence            001100000  0   00000011  2456677778999999999999876443311    1 1  112236778888889


Q ss_pred             CCcEEEEECCCCceEEEe
Q 020021          272 DGSVYAWSVRSGKEVASW  289 (332)
Q Consensus       272 Dg~i~vWd~~~~~~~~~~  289 (332)
                      ||.++.+|..+++.+...
T Consensus       288 ~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       288 DGVVVALDRRSGSELWKN  305 (377)
T ss_pred             CCeEEEEECCCCcEEEcc
Confidence            999999999999877654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.99  E-value=5.6e-07  Score=92.29  Aligned_cols=223  Identities=13%  Similarity=0.203  Sum_probs=136.2

Q ss_pred             EEEEEECCCCCEEEE-EeCCCcEEEEEcCCCeeeEEeeec-----------------ccceeEEEEccCCCEEEEecCCC
Q 020021           37 ISSMDFHKSSSYLVT-ASDDESIRLYDVTAATCLKTINSK-----------------KYGVDLVCFTSHPTTVIYSSKNG   98 (332)
Q Consensus        37 I~~i~~s~dg~~l~t-gs~D~tv~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~~s~~g   98 (332)
                      ...|+++++++.|.. -...+.|+.+|..++.. .++.+.                 -.....+++++.+..++.+..  
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--  702 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--  702 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--
Confidence            468899998876544 44557899999877543 333210                 012346888886666655532  


Q ss_pred             CCceeEEEEccCCceEEEeec---------c------cccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEec
Q 020021           99 WDESLRLLSLHDNKYLRYFKG---------H------HDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ  162 (332)
Q Consensus        99 ~d~~v~v~d~~~~~~~~~~~~---------h------~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  162 (332)
                      .++.|++||..++... .+.+         +      .....+++++|+++ .+++-+.++.|++||+.++..... . .
T Consensus       703 ~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~-~-g  779 (1057)
T PLN02919        703 GQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL-A-G  779 (1057)
T ss_pred             CCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE-E-e
Confidence            2678999998776532 2211         1      12346799999988 556667789999999876542111 0 0


Q ss_pred             CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeE
Q 020021          163 GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS  242 (332)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~  242 (332)
                      +.+.  + +. ..        .++.+..    +....    ........++++++|.++++...+++|++||..++....
T Consensus       780 g~~~--~-~~-~l--------~~fG~~d----G~g~~----~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t  839 (1057)
T PLN02919        780 GDPT--F-SD-NL--------FKFGDHD----GVGSE----VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT  839 (1057)
T ss_pred             cccc--c-Cc-cc--------ccccCCC----Cchhh----hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence            0000  0 00 00        0001000    00000    001123578999999999999999999999998776543


Q ss_pred             Eeeec----------CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          243 TYNVK----------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       243 ~~~~~----------~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                      .....          ...-+....++++++|+.+++-+.+++|++||+.+++.
T Consensus       840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            22110          00112455789999999999889999999999988764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.99  E-value=4.4e-10  Score=106.62  Aligned_cols=131  Identities=18%  Similarity=0.214  Sum_probs=99.6

Q ss_pred             HHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021           20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (332)
Q Consensus        20 ~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   99 (332)
                      ++..++.-++|+.|+...+|++|+-+.++|+.|+.-|.|++|++.+|.....+..|+.+++.+.-+.++..++++++.+ 
T Consensus      1087 IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S- 1165 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS- 1165 (1516)
T ss_pred             hHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc-
Confidence            4577889999999999999999999999999999999999999999999999999999999988888888877765422 


Q ss_pred             CceeEEEEccC-CceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEE
Q 020021          100 DESLRLLSLHD-NKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQ  156 (332)
Q Consensus       100 d~~v~v~d~~~-~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~  156 (332)
                      ..-..+|++.+ +...+++.+    -.++.|+.... +++.... ....+||+.++...
T Consensus      1166 ~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~-d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEA-DDALLYDVQTCSPL 1219 (1516)
T ss_pred             CchHHHhccccccCccccccc----cceeehhhhHHHHHhcccc-cceEEEecccCcHH
Confidence            33577999865 444555543    24566765422 2232233 45678888876543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=7.8e-07  Score=82.46  Aligned_cols=182  Identities=11%  Similarity=0.073  Sum_probs=110.9

Q ss_pred             ceeEEEEccCCCE-EEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEE-EeeCCC--cEEEEeCCCc
Q 020021           78 GVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDR--TVLLWDQRAE  153 (332)
Q Consensus        78 ~v~~~~~~~~~~~-~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~-s~s~Dg--~i~iWd~~~~  153 (332)
                      ....-.|+|+++. +++.+..+-+..|.++|+.+++...... ..+......|+|||+.++ +.+.++  .|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            4566789999986 6655544335689999998887544433 445556678999998665 444443  3444444333


Q ss_pred             eEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC-C--eE
Q 020021          154 KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HI  230 (332)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-g--~i  230 (332)
                      ......                                            ........-.|||||+.++..+.. +  .|
T Consensus       268 ~~~~LT--------------------------------------------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~I  303 (419)
T PRK04043        268 TLTQIT--------------------------------------------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNI  303 (419)
T ss_pred             cEEEcc--------------------------------------------cCCCccCccEECCCCCEEEEEECCCCCceE
Confidence            211100                                            000001223699999877766543 3  68


Q ss_pred             EEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC---------CcEEEEECCCCceEEEecCCCCCCceEEe
Q 020021          231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---------GSVYAWSVRSGKEVASWMSFDTEPPVIKW  301 (332)
Q Consensus       231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D---------g~i~vWd~~~~~~~~~~~~~~~~v~~l~~  301 (332)
                      ++.|+.+++...... . .  ..  ...|||||++|+-.+..         ..|++.|+.++.. ..+... ......+|
T Consensus       304 y~~dl~~g~~~rlt~-~-g--~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~  375 (419)
T PRK04043        304 FMKKLNSGSVEQVVF-H-G--KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRF  375 (419)
T ss_pred             EEEECCCCCeEeCcc-C-C--Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEE
Confidence            888988776533221 1 1  11  24899999998877654         2688888877653 444433 23345889


Q ss_pred             CCCeeEEEecc
Q 020021          302 TPGSLMFVTGS  312 (332)
Q Consensus       302 sp~~~~l~t~~  312 (332)
                      +|||++++-.+
T Consensus       376 SPDG~~I~f~~  386 (419)
T PRK04043        376 SSDGGSIMFIK  386 (419)
T ss_pred             CCCCCEEEEEE
Confidence            99998765543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.97  E-value=9.3e-06  Score=69.94  Aligned_cols=219  Identities=15%  Similarity=0.151  Sum_probs=138.8

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEc-cCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021           39 SMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT-SHPTTVIYSSKNGWDESLRLLSLHDNKYLRY  116 (332)
Q Consensus        39 ~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~  116 (332)
                      ++.|.+ ++.++++--..+.|..||..+++... +....  ...+++. ++ ..++.+..    ..+.++|.++++....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~----~~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADS----GGIAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEET----TCEEEEETTTTEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEc----CceEEEecCCCcEEEE
Confidence            567887 77778887788999999998876532 22222  4455666 45 45555542    3466779988865433


Q ss_pred             eec-----ccccEEEEEecCCCCeEEEeeCC--------CcEEEEeCCCceEEEEEE-ecCceeEEEcCCCeEEEEE--e
Q 020021          117 FKG-----HHDRVVSLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVA--F  180 (332)
Q Consensus       117 ~~~-----h~~~V~~v~~~~~~~~l~s~s~D--------g~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~  180 (332)
                      +..     .....+.+++.++|+..++-...        |.+..++.. ++...... ....+..++++++..+.++  .
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc
Confidence            332     45678899999999987776644        457777766 44433332 2334567788877654444  3


Q ss_pred             CCEEEEEECccCCC--C-CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021          181 GGYIRMFDARKYEK--G-PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (332)
Q Consensus       181 ~~~i~vwd~~~~~~--~-~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v  257 (332)
                      .+.|..+++.....  . +...............+++..+|.+.++....+.|.++|.. |+++..+...   ...++++
T Consensus       155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~  230 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNC  230 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEE
T ss_pred             cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEE
Confidence            57888888753221  0 11112222222235679999999999998899999999987 9988887753   2367789


Q ss_pred             EE-CCCCCEEEEEc
Q 020021          258 SF-SPEGMFVISGS  270 (332)
Q Consensus       258 ~~-spdg~~l~sgs  270 (332)
                      +| .|+.+.|+..+
T Consensus       231 ~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  231 AFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEESTTSSEEEEEE
T ss_pred             EEECCCCCEEEEEe
Confidence            99 57766665443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.95  E-value=1.8e-08  Score=88.13  Aligned_cols=155  Identities=17%  Similarity=0.241  Sum_probs=97.5

Q ss_pred             EEecCCCCeEEEeeCCCcEEEEeCCCce----EEEEEEecCceeE--EEcCCCeEEEEEeCC---EEEEEECccCCCCCe
Q 020021          127 LSLCSSKDCFISGSLDRTVLLWDQRAEK----CQGLLRVQGRPAA--AYDDQGLVFAVAFGG---YIRMFDARKYEKGPF  197 (332)
Q Consensus       127 v~~~~~~~~l~s~s~Dg~i~iWd~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~i~vwd~~~~~~~~~  197 (332)
                      +..+++++.||.+-.++...+.++..+.    +......+..+.+  ....+..++.+-..|   .+.+|.....     
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-----  142 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-----  142 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-----
Confidence            3455666667666666665555554332    2222222222211  111222222222223   3444443321     


Q ss_pred             eEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEE
Q 020021          198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYA  277 (332)
Q Consensus       198 ~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~v  277 (332)
                      ......||.+.+..|++|||++.++++..|++|++-.......+..|-.  +|...|..++.- +++.|+|||-|+++++
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~-~~~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLT-DNYLLLSGSGDKTLRL  219 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeec-cCceeeecCCCCcEEE
Confidence            1123347778899999999999999999999999988766666655543  466677777764 5677999999999999


Q ss_pred             EECCCCceEEEe
Q 020021          278 WSVRSGKEVASW  289 (332)
Q Consensus       278 Wd~~~~~~~~~~  289 (332)
                      ||+.+|+.+.++
T Consensus       220 Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  220 WDITSGKLLDTC  231 (390)
T ss_pred             EecccCCccccc
Confidence            999999987765

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.93  E-value=1.9e-08  Score=87.90  Aligned_cols=165  Identities=16%  Similarity=0.188  Sum_probs=105.2

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCe----eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (332)
Q Consensus        37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~  112 (332)
                      +..+..++++.++|.+-.++...++++....    ++....... .-..+.|.........+-..|-...+.+|....+ 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSG-  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence            4456677888888888888876677665332    222222111 1233444444444444444454566777776653 


Q ss_pred             eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccC
Q 020021          113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  192 (332)
Q Consensus       113 ~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~  192 (332)
                      +..-+-||-..++.|+++||+++++|+.+|..||+=.......+..+                                 
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf---------------------------------  189 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF---------------------------------  189 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh---------------------------------
Confidence            34456789999999999999999999999999998554221111111                                 


Q ss_pred             CCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021          193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       193 ~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                              . .||..-|..++.-+ ++.|++++.|+++++||..+|+.++++.+
T Consensus       190 --------c-lGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  190 --------C-LGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             --------c-cccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcccccch
Confidence                    1 13333444455543 45589999999999999999988877643

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.93  E-value=3.2e-09  Score=63.44  Aligned_cols=38  Identities=34%  Similarity=0.660  Sum_probs=36.3

Q ss_pred             ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEe
Q 020021          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD  149 (332)
Q Consensus       112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd  149 (332)
                      +++.++++|.+.|++++|+|++.+|+|++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56789999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=5.6e-07  Score=82.02  Aligned_cols=248  Identities=19%  Similarity=0.356  Sum_probs=151.0

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCE--EEE--ecCCCCCceeEEEEccCCce
Q 020021           38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIY--SSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        38 ~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~--~s~~g~d~~v~v~d~~~~~~  113 (332)
                      ++++|++|..+.| =-.-+.+.+|+....+.+. -.-|..++....++|.+..  ++.  -.+.|.-..+|+|-..-...
T Consensus       129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~  206 (566)
T KOG2315|consen  129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ  206 (566)
T ss_pred             cccccccchhhhh-hhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence            4788998875532 2223569999987633221 1223456777788887542  211  12346667899998752211


Q ss_pred             -----EEEeecccccEEEEEecCCCC---eEEEeeCCC---------cEEEEeCCCceEEEEEE-ecCceeEEEcCCCeE
Q 020021          114 -----LRYFKGHHDRVVSLSLCSSKD---CFISGSLDR---------TVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLV  175 (332)
Q Consensus       114 -----~~~~~~h~~~V~~v~~~~~~~---~l~s~s~Dg---------~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~  175 (332)
                           .++|-  ...=..+.|++-|.   .|++..-|+         ++.+.++....+.-.+. ..-.....+.+++.-
T Consensus       207 ~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E  284 (566)
T KOG2315|consen  207 HQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE  284 (566)
T ss_pred             cchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence                 11111  11123455665554   233433444         56666666444432221 122335677788866


Q ss_pred             EEEEeC---CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC---CCeEEEEEccCCeEeEEeeecCC
Q 020021          176 FAVAFG---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       176 ~~~~~~---~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~  249 (332)
                      |++.++   ..+.++|++-.-     .+..  ...+-+.+-|||.|++++.++.   .|.|-+||+.+.+++..+..   
T Consensus       285 F~VvyGfMPAkvtifnlr~~~-----v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a---  354 (566)
T KOG2315|consen  285 FAVVYGFMPAKVTIFNLRGKP-----VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA---  354 (566)
T ss_pred             EEEEEecccceEEEEcCCCCE-----eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---
Confidence            666654   789999987421     1221  1235578889999999988765   48999999998877776652   


Q ss_pred             CCCcceEEEECCCCCEEEEEcC------CCcEEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021          250 SRNSTLEASFSPEGMFVISGSG------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP  303 (332)
Q Consensus       250 ~~~~~~~v~~spdg~~l~sgs~------Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp  303 (332)
                        ...+-+.|+|||+|++|+..      |..++||++ +|..+..-+ +..+...+.|-|
T Consensus       355 --~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~-f~sEL~qv~W~P  410 (566)
T KOG2315|consen  355 --ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKM-FKSELLQVEWRP  410 (566)
T ss_pred             --CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhh-hhHhHhheeeee
Confidence              22334799999999999966      788999999 577665422 233577788876

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=1.2e-06  Score=79.85  Aligned_cols=261  Identities=13%  Similarity=0.201  Sum_probs=150.0

Q ss_pred             cEEEEEECCCCCEEEEEeCC-----------CcEEEEEcCCCeeeEEeeec--ccce-eEEEEccCCCEEEEecCCCCCc
Q 020021           36 RISSMDFHKSSSYLVTASDD-----------ESIRLYDVTAATCLKTINSK--KYGV-DLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D-----------~tv~iwd~~~~~~~~~~~~~--~~~v-~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      .|.-+.|||..+||+|=|.-           ..++|||+.+|...+.+...  ...+ ....|+.+.++++-...    +
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~----~  326 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG----N  326 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc----c
Confidence            36788999999999996632           57999999999998887652  2222 34678888888776542    5


Q ss_pred             eeEEEEccCCceEEEeec---ccccEEEEEecCCCCeEEEeeCC-----CcEEEEeCCCceEEEEEEecCcee--EEEcC
Q 020021          102 SLRLLSLHDNKYLRYFKG---HHDRVVSLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLLRVQGRPA--AAYDD  171 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~---h~~~V~~v~~~~~~~~l~s~s~D-----g~i~iWd~~~~~~~~~~~~~~~~~--~~~~~  171 (332)
                      .|.+++...-   .-+.+   .-..|....|+|.+..||.-...     ..+-+-.+-+.+.+.+..+..+..  .-+..
T Consensus       327 sisIyEtpsf---~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk  403 (698)
T KOG2314|consen  327 SISIYETPSF---MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK  403 (698)
T ss_pred             eEEEEecCce---eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc
Confidence            6888876552   22222   23456777899986555533211     011122222222222211111111  12234


Q ss_pred             CCeEEEEEeCC-----------EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC---CCeEEEEEccC
Q 020021          172 QGLVFAVAFGG-----------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFR  237 (332)
Q Consensus       172 ~~~~~~~~~~~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~---dg~i~i~d~~~  237 (332)
                      +|.+++.-.+.           .+.|+-++..+. +.....+   ...+...++-|.|..+++-+.   ..++..|...+
T Consensus       404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~vel---ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVEL---KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             CCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeeec---chheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            55555544321           233343433221 1111211   134566778899977665432   34677776652


Q ss_pred             -C---eEeEEeeecCCCCCcceEEEECCCCCEEEEE---cCCCcEEEEECCCCceE-EEecCCCCCCceEEeCCCeeEEE
Q 020021          238 -G---TLLSTYNVKPVSRNSTLEASFSPEGMFVISG---SGDGSVYAWSVRSGKEV-ASWMSFDTEPPVIKWTPGSLMFV  309 (332)
Q Consensus       238 -~---~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg---s~Dg~i~vWd~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~  309 (332)
                       +   .++..+.     ...++.+-|||.|++++.+   |..|.+..+|....... .....|. ..+.+-|.|.|++++
T Consensus       480 ~~~~~~lVk~~d-----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvv  553 (698)
T KOG2314|consen  480 NIKKPSLVKELD-----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVV  553 (698)
T ss_pred             CCCchhhhhhhc-----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEE
Confidence             1   1222221     2345578999999999887   55789999998742222 1223344 357799999999999


Q ss_pred             eccc
Q 020021          310 TGSS  313 (332)
Q Consensus       310 t~~~  313 (332)
                      |+++
T Consensus       554 T~ss  557 (698)
T KOG2314|consen  554 TSSS  557 (698)
T ss_pred             Eeee
Confidence            9875

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2.8e-08  Score=88.11  Aligned_cols=236  Identities=16%  Similarity=0.180  Sum_probs=153.7

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCE--EEEecCCCCC
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWD  100 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~-D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d  100 (332)
                      .+.++.|+.|.+.|.+++.+-|+-++.|.+. |+.+|++|+++-..+.-+....-+-...++...+..  .++.+. .-+
T Consensus        43 vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~-~~s  121 (558)
T KOG0882|consen   43 VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSL-FKS  121 (558)
T ss_pred             eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeec-ccC
Confidence            5678889999999999999999999999888 999999999865544322221111112223333322  222221 225


Q ss_pred             ceeEEEEccCCc-eEE-EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021          101 ESLRLLSLHDNK-YLR-YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  178 (332)
Q Consensus       101 ~~v~v~d~~~~~-~~~-~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      +.+.++|-.... +.. .-+-|..+|..+.+.+.++.++|....|.|..|.....     ++-+.. ...          
T Consensus       122 g~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~-----~qfPr~-~l~----------  185 (558)
T KOG0882|consen  122 GKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP-----FQFPRT-NLN----------  185 (558)
T ss_pred             CCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCc-----ccCccc-ccc----------
Confidence            678888854433 222 23459999999999999999999999999999986531     110000 000          


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee------------
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV------------  246 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------  246 (332)
                              |.++.    ...++..........++.|||+|..+..-+.|..|++++..+|.+.+.+.-            
T Consensus       186 --------~~~K~----eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~  253 (558)
T KOG0882|consen  186 --------FELKH----ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSP  253 (558)
T ss_pred             --------ccccc----cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccc
Confidence                    00000    000111111223456789999999999999999999999998876655410            


Q ss_pred             ------------------cCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe
Q 020021          247 ------------------KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW  289 (332)
Q Consensus       247 ------------------~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~  289 (332)
                                        .-.....-+.+.|...|+||+-|+.=| |+|.++.+++.+..+
T Consensus       254 y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  254 YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence                              000111223578999999999998877 999999998776554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.88  E-value=1.2e-06  Score=73.11  Aligned_cols=232  Identities=15%  Similarity=0.115  Sum_probs=138.8

Q ss_pred             CEEEEEeCCCcEEEEEcCCCeee-EEeeecccceeEEEEccCCC-EEEEecCCCCCceeEEEEccCCceEEEeecccccE
Q 020021           47 SYLVTASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV  124 (332)
Q Consensus        47 ~~l~tgs~D~tv~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V  124 (332)
                      .+||.||.-|...+|...+.+.. +....+...|..+.-..+.. .+..++.   |.++++.++..+.....+....-.+
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sn---dht~k~~~~~~~s~~~~~h~~~~~~  161 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASN---DHTGKTMVVSGDSNKFAVHNQNLTQ  161 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccC---CcceeEEEEecCcccceeeccccce
Confidence            58999999999999999876543 22333333333221111111 2333332   7788888887654433322222237


Q ss_pred             EEEEecCCCCeEEEeeCCCcEEEEeCCCceE--EEEEEec---CceeEEEcCCCeEEEEEe-CCEEEEEECccCCCCCee
Q 020021          125 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKC--QGLLRVQ---GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFD  198 (332)
Q Consensus       125 ~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~i~vwd~~~~~~~~~~  198 (332)
                      .++++++|++++++.+.-..|-.+.+.....  ......+   +--...++.....+++++ ||++.+||+|.....-..
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~  241 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE  241 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence            8899999999999999999999998754332  2211111   112345555566666665 899999999976543222


Q ss_pred             EEE-ecCCCCCceeEEEcCCCC--EEEEEcCCCeEEEEEccCCeEeEEeeecC-----CCCCcceEEEECCCCCEEEEEc
Q 020021          199 IFS-VGGDISDANVVKFSNDGR--LMLLTTMEGHIHVLDSFRGTLLSTYNVKP-----VSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       199 ~~~-~~~~~~~v~~v~~s~dg~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~v~~spdg~~l~sgs  270 (332)
                      .-+ -..|...++.|.||+.|.  +|...---+.+++.|++++...+.+...+     .....+....|+.++.-+...+
T Consensus       242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN  321 (344)
T ss_pred             hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence            111 123456789999999774  56666666789999999876544332211     1112244456666666555555


Q ss_pred             CCCcEEEEECCC
Q 020021          271 GDGSVYAWSVRS  282 (332)
Q Consensus       271 ~Dg~i~vWd~~~  282 (332)
                      ++. +.-|++.+
T Consensus       322 e~~-~ae~ni~s  332 (344)
T KOG4532|consen  322 ELQ-GAEYNILS  332 (344)
T ss_pred             chh-hheeeccc
Confidence            443 44555544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=3e-07  Score=86.07  Aligned_cols=271  Identities=13%  Similarity=0.143  Sum_probs=167.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---------------eeEEeeecccceeEEEEccCCCEEEEecCC
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---------------CLKTINSKKYGVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~   97 (332)
                      .+....+++|+.+..++|.||.||-+++-.+.+..               .-+++.+|+..|..+.|....+++-++.. 
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt-   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT-   91 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC-
Confidence            34567899999999999999999999999775421               23567899999999999988877766543 


Q ss_pred             CCCceeEEEEccCCceEEEe--ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE-EEEecCceeEEEcCCCe
Q 020021           98 GWDESLRLLSLHDNKYLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDDQGL  174 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~--~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~  174 (332)
                        ++-|-||-+-.+.-...+  ...++-|.+++|..||..+..+-.||.|.+=.+..++.-. .++.....-+..+++..
T Consensus        92 --~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~  169 (1189)
T KOG2041|consen   92 --SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLE  169 (1189)
T ss_pred             --CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHH
Confidence              678999988766532222  2345678899999999888777777776654443332211 11111112233344333


Q ss_pred             -EEEEEeCCEEEEEECccCCCCCe----eEEEecCC---CCCceeEE--------EcCCCCEEEEEcCCCeEEEEEccCC
Q 020021          175 -VFAVAFGGYIRMFDARKYEKGPF----DIFSVGGD---ISDANVVK--------FSNDGRLMLLTTMEGHIHVLDSFRG  238 (332)
Q Consensus       175 -~~~~~~~~~i~vwd~~~~~~~~~----~~~~~~~~---~~~v~~v~--------~s~dg~~l~~~~~dg~i~i~d~~~~  238 (332)
                       .+..-..|.+.++|....-..++    .....++.   ...+-.+.        .-||-..++++-.+|.++|..-...
T Consensus       170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND  249 (1189)
T KOG2041|consen  170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND  249 (1189)
T ss_pred             HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence             22233457888887532100000    00000000   00111121        2358889999999999888654332


Q ss_pred             eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC---------cEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEE
Q 020021          239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV  309 (332)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg---------~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  309 (332)
                      .....+..    .-.+....|+|+|..||.++.|.         .|..+ -.-|+.+.+++.....|+.++|-..|..++
T Consensus       250 ~~Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy-sp~G~i~gtlkvpg~~It~lsWEg~gLriA  324 (1189)
T KOG2041|consen  250 PEPVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY-SPYGHIVGTLKVPGSCITGLSWEGTGLRIA  324 (1189)
T ss_pred             CCCeEEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEe-ccchhheEEEecCCceeeeeEEcCCceEEE
Confidence            21111111    12344678999999999998754         23333 235677788887788899999987775554


Q ss_pred             ec
Q 020021          310 TG  311 (332)
Q Consensus       310 t~  311 (332)
                      .+
T Consensus       325 ~A  326 (1189)
T KOG2041|consen  325 IA  326 (1189)
T ss_pred             EE
Confidence            43

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.81  E-value=8.3e-06  Score=73.81  Aligned_cols=267  Identities=12%  Similarity=0.167  Sum_probs=163.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCc---------------EEEEEcCCCeeeEEeeecccc--ee-EEEEccCCCEEEEecCC
Q 020021           36 RISSMDFHKSSSYLVTASDDES---------------IRLYDVTAATCLKTINSKKYG--VD-LVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~t---------------v~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~s~~   97 (332)
                      .|.-+.|||.+.||.|=+.-..               +.+||..++..+..+.....+  .. .+.|+.+....+-..  
T Consensus        73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv--  150 (561)
T COG5354          73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV--  150 (561)
T ss_pred             CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc--
Confidence            4667889999999998765444               999999999998887665443  33 566776666544332  


Q ss_pred             CCCceeEEEEccCCce----EEEeecccccEEEEEecCCCC--eEE-----EeeCCCcEEEEeCCCceEEEEEEecCc--
Q 020021           98 GWDESLRLLSLHDNKY----LRYFKGHHDRVVSLSLCSSKD--CFI-----SGSLDRTVLLWDQRAEKCQGLLRVQGR--  164 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~----~~~~~~h~~~V~~v~~~~~~~--~l~-----s~s~Dg~i~iWd~~~~~~~~~~~~~~~--  164 (332)
                        .+.+.++++ ++..    .+.++  ...|....|+|-++  .|+     ..+.++.+++|.+..++.+.+..+-..  
T Consensus       151 --~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~  225 (561)
T COG5354         151 --GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG  225 (561)
T ss_pred             --cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecc
Confidence              246888887 3221    12222  24566777887533  344     245678899998876655443322111  


Q ss_pred             eeEEEcCCCeEEEEEe------------CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE--cCCCeE
Q 020021          165 PAAAYDDQGLVFAVAF------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT--TMEGHI  230 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~------------~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~--~~dg~i  230 (332)
                      ...-+...+.++++-.            ...+.+++++....   .. .. ....+|...+++|+++.+++.  -..-.+
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~V-~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~  300 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI---PV-EK-DLKDPVHDFTWEPLSSRFAVISGYMPASV  300 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc---ce-ec-cccccceeeeecccCCceeEEecccccce
Confidence            1122233332222110            13566776653221   11 10 224578899999999877654  477789


Q ss_pred             EEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECCCCceEE-EecCCCCCCceEEeCCCee
Q 020021          231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSL  306 (332)
Q Consensus       231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~~~~~~~-~~~~~~~~v~~l~~sp~~~  306 (332)
                      .++|++.. +.  +....+   .-..+.|||.+++++.++-|   |.|-+||......+. .+.+.+  ..-..|+||+.
T Consensus       301 s~~~lr~N-l~--~~~Pe~---~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~q  372 (561)
T COG5354         301 SVFDLRGN-LR--FYFPEQ---KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQ  372 (561)
T ss_pred             eecccccc-eE--EecCCc---ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCce
Confidence            99998754 32  222222   23356899999999998765   589999987655544 443332  24466999998


Q ss_pred             EEEecc--c----e--EEEecccc
Q 020021          307 MFVTGS--S----E--LSFWIPDL  322 (332)
Q Consensus       307 ~l~t~~--~----d--~~~w~~~~  322 (332)
                      ++-++.  .    |  +++|+...
T Consensus       373 F~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         373 FYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             EEEecCCCcccccCcceEEEEecC
Confidence            776643  2    2  78886544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.79  E-value=2.9e-06  Score=71.78  Aligned_cols=240  Identities=16%  Similarity=0.185  Sum_probs=130.3

Q ss_pred             cEEEEEEC---CCCC-EEEEEeCCCcEEEEEcCCCeeeEEeee---cccc---eeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           36 RISSMDFH---KSSS-YLVTASDDESIRLYDVTAATCLKTINS---KKYG---VDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        36 ~I~~i~~s---~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~---~~~~---v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      .++.+.|.   .+|. .++-+-.+|.|.+|...-.+....+.+   ..-.   ...+.|++.++.++.+-+   ++.+..
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s---~G~~~~  147 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDS---RGSISG  147 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcC---CCcEEE
Confidence            34445553   2344 456677778888887654333333322   1111   224567788888777654   345554


Q ss_pred             EEccCCce--EEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCC-ceEEEE---EEecCceeEEEc-CCC-eEE
Q 020021          106 LSLHDNKY--LRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRA-EKCQGL---LRVQGRPAAAYD-DQG-LVF  176 (332)
Q Consensus       106 ~d~~~~~~--~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~-~~~~~~---~~~~~~~~~~~~-~~~-~~~  176 (332)
                      -+......  .+.++.|.-+++.+.|+. +.+.+.|||.|+.+..||++. ++++..   .+..++.....+ +.+ .++
T Consensus       148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~  227 (339)
T KOG0280|consen  148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA  227 (339)
T ss_pred             EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence            44433333  337889999999999986 567999999999999999983 333221   122233222222 223 566


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC--CEEEEEcCCCeEEEEEccCCeEe--EEeeecCCCCC
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVSRN  252 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~  252 (332)
                      ++++|..|++||.|+..++-+... +   ...|=.+..+|.-  ++++++--+| .+|.+...+...  ..+.....|..
T Consensus       228 TGsYDe~i~~~DtRnm~kPl~~~~-v---~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdS  302 (339)
T KOG0280|consen  228 TGSYDECIRVLDTRNMGKPLFKAK-V---GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDS  302 (339)
T ss_pred             EeccccceeeeehhcccCccccCc-c---ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccc
Confidence            677899999999997654332211 1   1345556666542  3333333333 345554433211  11222223333


Q ss_pred             cceEEEECCCCCEEEEEc-CCCcEE-EEECCCC
Q 020021          253 STLEASFSPEGMFVISGS-GDGSVY-AWSVRSG  283 (332)
Q Consensus       253 ~~~~v~~spdg~~l~sgs-~Dg~i~-vWd~~~~  283 (332)
                      -+..-.|.....+|||++ .|+.|+ +|-..++
T Consensus       303 l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  303 LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             eeeccccccccceeeeeeccccceeeeeeeccC
Confidence            222233333345678864 466655 6654443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.76  E-value=1.7e-05  Score=67.18  Aligned_cols=169  Identities=13%  Similarity=0.179  Sum_probs=105.9

Q ss_pred             EEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC---------ceeEEEcC-------CCeEEEEEeCCEEEEE
Q 020021          124 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---------RPAAAYDD-------QGLVFAVAFGGYIRMF  187 (332)
Q Consensus       124 V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~---------~~~~~~~~-------~~~~~~~~~~~~i~vw  187 (332)
                      =+.++|+||+..||.+...|+|+++|+....+. .+....         .....+-+       ...++...+.|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            457899999999999999999999998654332 221110         11112211       1256666677888777


Q ss_pred             ECccCCCCC---eeEEEecCC-CCCceeEEEcCCCCEEEEEcCCCe-----------EEEEEccCCeEeEE---------
Q 020021          188 DARKYEKGP---FDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGH-----------IHVLDSFRGTLLST---------  243 (332)
Q Consensus       188 d~~~~~~~~---~~~~~~~~~-~~~v~~v~~s~dg~~l~~~~~dg~-----------i~i~d~~~~~~~~~---------  243 (332)
                      -+.......   ...++...+ +..++++.++|..++|++++....           +..|.+-++.+-..         
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~  204 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI  204 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence            653221111   123333333 347899999999999888764321           34454432211100         


Q ss_pred             --------------e---eecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC
Q 020021          244 --------------Y---NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD  293 (332)
Q Consensus       244 --------------~---~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~  293 (332)
                                    +   .........+..+..||||+.||+...+|.|.+|++.+.+....+..+.
T Consensus       205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence                          0   0011234567789999999999999999999999999988877765443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.73  E-value=1.8e-07  Score=79.58  Aligned_cols=264  Identities=14%  Similarity=0.244  Sum_probs=142.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-ee----EEeeeccc------------ceeEEEEcc-CCCEEEEec
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CL----KTINSKKY------------GVDLVCFTS-HPTTVIYSS   95 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~-~~----~~~~~~~~------------~v~~~~~~~-~~~~~~~~s   95 (332)
                      ...|+++.|...|.||+||..-|.|-+|.-+... |-    ..+++|..            .|..+.|.. .+..-+..+
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3569999999999999999999999999765322 21    12334432            233344443 333222222


Q ss_pred             CCCCCceeEEEEccCCceEEEee----------cccccEEEEE------ecCCCCeEEEeeCCCcEEEEeCCCceEEEEE
Q 020021           96 KNGWDESLRLLSLHDNKYLRYFK----------GHHDRVVSLS------LCSSKDCFISGSLDRTVLLWDQRAEKCQGLL  159 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~~----------~h~~~V~~v~------~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  159 (332)
                        +-|.++++|.+..... +...          ...+++++..      .+. ...++.+-   -.|++.  .   ....
T Consensus       106 --tNdktiKlWKiyeknl-k~va~nnls~~~~~~~~g~~~s~~~l~lprls~-hd~iiaa~---p~rvya--N---aH~y  173 (460)
T COG5170         106 --TNDKTIKLWKIYEKNL-KVVAENNLSDSFHSPMGGPLTSTKELLLPRLSE-HDEIIAAK---PCRVYA--N---AHPY  173 (460)
T ss_pred             --cCCceeeeeeeecccc-hhhhccccccccccccCCCcCCHHHhhcccccc-cceEEEec---cceecc--c---ccee
Confidence              1288999998855321 1100          0011111110      011 11111111   112221  0   0000


Q ss_pred             EecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCC-----CCceeEEEcCCC-CEEEEEcCCCeEEEE
Q 020021          160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI-----SDANVVKFSNDG-RLMLLTTMEGHIHVL  233 (332)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~-----~~v~~v~~s~dg-~~l~~~~~dg~i~i~  233 (332)
                         ......+..+...+..+.+-.|.+|++.... +.+.+....++.     .-+++..|+|.- ..+.-++..|.|++-
T Consensus       174 ---hiNSiS~NsD~et~lSaDdLrINLWnl~i~D-~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         174 ---HINSISFNSDKETLLSADDLRINLWNLEIID-GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             ---EeeeeeecCchheeeeccceeeeeccccccC-CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence               1112233334445555566678888765432 334444333321     235677888865 456667888999999


Q ss_pred             EccCCeEeEE----e--eecC-------CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCC-ceEEEecCC-------
Q 020021          234 DSFRGTLLST----Y--NVKP-------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG-KEVASWMSF-------  292 (332)
Q Consensus       234 d~~~~~~~~~----~--~~~~-------~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~-~~~~~~~~~-------  292 (332)
                      |++...+-..    +  ...+       .-...+..+.|+|+|+|+++-+. -+++|||+... +++.++.-|       
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l  328 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDEL  328 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHH
Confidence            9874332110    1  0000       11234557889999999998864 58999999764 456665433       


Q ss_pred             -----CCCC---ceEEeCCCeeEEEeccce
Q 020021          293 -----DTEP---PVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       293 -----~~~v---~~l~~sp~~~~l~t~~~d  314 (332)
                           +..|   ..+.||.|.+.+.+|+..
T Consensus       329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy~  358 (460)
T COG5170         329 NDVYENDAIFDKFEISFSGDDKHVLSGSYS  358 (460)
T ss_pred             HhhhhccceeeeEEEEecCCcccccccccc
Confidence                 2222   337889888888888865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.69  E-value=6.1e-06  Score=74.12  Aligned_cols=168  Identities=13%  Similarity=0.170  Sum_probs=114.8

Q ss_pred             CCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC-cEEEEeCCCceEEEEEEecCce
Q 020021           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLLRVQGRP  165 (332)
Q Consensus        87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg-~i~iWd~~~~~~~~~~~~~~~~  165 (332)
                      +|..++..|.    +...+.+...+-.+  -.+|...|.-..+..+++-++-|..|| .+-++|..+++....       
T Consensus       331 ~Gd~ia~VSR----GkaFi~~~~~~~~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-------  397 (668)
T COG4946         331 NGDYIALVSR----GKAFIMRPWDGYSI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-------  397 (668)
T ss_pred             CCcEEEEEec----CcEEEECCCCCeeE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-------
Confidence            3444544442    34455444333322  236777788888888888888888888 778888766542211       


Q ss_pred             eEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021          166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (332)
                                                           ......+.++..+|||++++++.....+.++|+.+|.....-.
T Consensus       398 -------------------------------------e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk  440 (668)
T COG4946         398 -------------------------------------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK  440 (668)
T ss_pred             -------------------------------------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc
Confidence                                                 1123457788999999999999999999999999987643211


Q ss_pred             ecCCCCCcceEEEECCCCCEEEEEcCCC----cEEEEECCCCceEEEecCCCCCCceEEeCCCeeEE
Q 020021          246 VKPVSRNSTLEASFSPEGMFVISGSGDG----SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF  308 (332)
Q Consensus       246 ~~~~~~~~~~~v~~spdg~~l~sgs~Dg----~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  308 (332)
                         ....-++..+|+|+++++|-+=.+|    .|+++|+.+++... .+...+.=.+-+|.||++.|
T Consensus       441 ---S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         441 ---SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             ---cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCCCcEE
Confidence               1235677889999999999998887    79999998877543 22222223456788998755

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.68  E-value=0.00021  Score=64.54  Aligned_cols=113  Identities=14%  Similarity=0.129  Sum_probs=87.9

Q ss_pred             CCCceeEEEcCCCCEEEEEcCCC-eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 020021          206 ISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       206 ~~~v~~v~~s~dg~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~  284 (332)
                      ...|....+.-++.-++.|..|| .+-|+|..+++.... +   ..-+.+.++..+|||++++.+..-..+-+.|+.+++
T Consensus       359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-E---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-e---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            34577777888888889999999 899999988875432 2   234567789999999999999888899999999987


Q ss_pred             eEEEecCCCCCCceEEeCCCeeEEEeccce------EEEecccc
Q 020021          285 EVASWMSFDTEPPVIKWTPGSLMFVTGSSE------LSFWIPDL  322 (332)
Q Consensus       285 ~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d------~~~w~~~~  322 (332)
                      ....=+.-.+-|+.+.|||+++.++-+-.+      +++.+.+.
T Consensus       435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            543334445678999999999999988654      66665554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.67  E-value=1.9e-07  Score=95.10  Aligned_cols=186  Identities=20%  Similarity=0.328  Sum_probs=127.6

Q ss_pred             eecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce---eEEEcCCCeEEE-EEeCCEEEEEECccC
Q 020021          117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFA-VAFGGYIRMFDARKY  192 (332)
Q Consensus       117 ~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~i~vwd~~~~  192 (332)
                      ++.|-..|.++.-+|..-+-+||+.||.+++|....+..+-.++..+..   ...+...|.-+. +..||.+.+|.+.. 
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence            4556678888888898888999999999999998887777666654432   234445555444 44689999998751 


Q ss_pred             CCCCeeEEEecCCCCCceeEEEcCCCCEEEEE---cCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE
Q 020021          193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (332)
Q Consensus       193 ~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg  269 (332)
                        .++  ..-..|....+.+.|-.  +.++++   +.++.+.+||........-  .+..|...++.+++-|..+.|+||
T Consensus      2283 --k~~--~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~--v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2283 --KPY--TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL--VHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred             --cce--eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce--eeeecCCCceEEEEcCcceEEEec
Confidence              222  22222323334444433  445544   3567899999654322111  113466677889999999999999


Q ss_pred             cCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccc
Q 020021          270 SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       270 s~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~  321 (332)
                      |.+|.|++||+...+.++++..         +. ...+|++|+.+  +++|..+
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcc
Confidence            9999999999988887777654         34 55688888876  7777654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.67  E-value=2.9e-05  Score=66.24  Aligned_cols=220  Identities=19%  Similarity=0.191  Sum_probs=128.1

Q ss_pred             CCCcEEEEEcCCCeeeEEeeecccceeEEE-EccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCC
Q 020021           54 DDESIRLYDVTAATCLKTINSKKYGVDLVC-FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS  132 (332)
Q Consensus        54 ~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~  132 (332)
                      .+++|..||..+|+.+-........-..++ ..+.+..++.+..   ++.+..+|..+|+.+..... ...+.... ...
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~   75 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASG---DGNLYALDAKTGKVLWRFDL-PGPISGAP-VVD   75 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEET---TSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcC---CCEEEEEECCCCCEEEEeec-ccccccee-eec
Confidence            378999999999999877754221111121 2334556666532   78899999999998766653 11111111 223


Q ss_pred             CCeEEEeeCCCcEEEEeCCCceEEEEE-EecC-----ceeEEEc-CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCC
Q 020021          133 KDCFISGSLDRTVLLWDQRAEKCQGLL-RVQG-----RPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD  205 (332)
Q Consensus       133 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~~~-----~~~~~~~-~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~  205 (332)
                      +..++.++.|+.+..+|.++++..-.. ....     ....... .+..++....++.|..+|.++.+.  .-.......
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~--~w~~~~~~~  153 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL--LWKYPVGEP  153 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE--EEEEESSTT
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE--EEEeecCCC
Confidence            456666668889999999999887663 3221     1111111 134455555588999999875431  111122111


Q ss_pred             CC--------CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEE
Q 020021          206 IS--------DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYA  277 (332)
Q Consensus       206 ~~--------~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~v  277 (332)
                      ..        ....-....++ .+..++.++.+..+|..+++.+-  ... ..  ... ....+++..|+.++.|+.|.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w--~~~-~~--~~~-~~~~~~~~~l~~~~~~~~l~~  226 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW--SKP-IS--GIY-SLPSVDGGTLYVTSSDGRLYA  226 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE--EEC-SS---EC-ECEECCCTEEEEEETTTEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE--Eec-CC--Ccc-CCceeeCCEEEEEeCCCEEEE
Confidence            10        11122223345 66667777754444999998652  221 11  111 124578888888889999999


Q ss_pred             EECCCCceEE
Q 020021          278 WSVRSGKEVA  287 (332)
Q Consensus       278 Wd~~~~~~~~  287 (332)
                      ||+.+++.+.
T Consensus       227 ~d~~tG~~~W  236 (238)
T PF13360_consen  227 LDLKTGKVVW  236 (238)
T ss_dssp             EETTTTEEEE
T ss_pred             EECCCCCEEe
Confidence            9999998764

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.67  E-value=2.4e-05  Score=66.73  Aligned_cols=216  Identities=19%  Similarity=0.150  Sum_probs=124.9

Q ss_pred             CceeEEEEccCCceEEEeec---ccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-eEEEcCCCeE
Q 020021          100 DESLRLLSLHDNKYLRYFKG---HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLV  175 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~---h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~  175 (332)
                      +++|..+|..+|+.+....-   ....+..  ..++++.++.++.++.+..||..+++..-.+..+... ......++.+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT--AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET--EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce--EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence            56788999989888776642   2222211  2235677888899999999999999887777654321 1123345566


Q ss_pred             EEEEeCCEEEEEECccCCCCCeeE-EEecCCCCC-ceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021          176 FAVAFGGYIRMFDARKYEKGPFDI-FSVGGDISD-ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (332)
Q Consensus       176 ~~~~~~~~i~vwd~~~~~~~~~~~-~~~~~~~~~-v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (332)
                      +....++.+..+|.++.+.  .-. ......... ........++..++++..++.|+.+|+.+|+.+-.+.........
T Consensus        80 ~v~~~~~~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~  157 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKV--LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS  157 (238)
T ss_dssp             EEEETTSEEEEEETTTSCE--EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred             ccccceeeeEecccCCcce--eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence            6666778999999765432  111 111111111 112233334778888888999999999999998766542211111


Q ss_pred             -------ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc--ceEEEeccccc
Q 020021          254 -------TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPDLS  323 (332)
Q Consensus       254 -------~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~--~d~~~w~~~~~  323 (332)
                             ...-....++ .++.++.++.+..+|+.+++.+.... .. .+..+ ..+++..+..++  ..+..|++...
T Consensus       158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~-~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS-GIYSL-PSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS--ECEC-EECCCTEEEEEETTTEEEEEETTTT
T ss_pred             ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC-CccCC-ceeeCCEEEEEeCCCEEEEEECCCC
Confidence                   1112222345 66677777864444999998664333 22 22221 234444444433  44777776553

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.67  E-value=5.5e-05  Score=76.61  Aligned_cols=246  Identities=13%  Similarity=0.157  Sum_probs=141.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEeC----C--CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           33 YNGRISSMDFHKSSSYLVTASD----D--ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~----D--~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      +...-..|+|=.||.++|..+.    .  +.+|||+-+ |+...+-+.-..=-..++|.|.|..+++.....-...|..|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            4444557899999999988875    2  689999876 55333322222223468999999888776542223344445


Q ss_pred             EccCCceEEE--e--ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEE--EEEEecC---ceeEEEcCC-C---
Q 020021          107 SLHDNKYLRY--F--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ--GLLRVQG---RPAAAYDDQ-G---  173 (332)
Q Consensus       107 d~~~~~~~~~--~--~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~--~~~~~~~---~~~~~~~~~-~---  173 (332)
                      .- +|-....  +  ......|..+.|++|+..||-.-.|. |++|-...-+.-  ..+..+.   .....+++. .   
T Consensus       287 Er-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L  364 (928)
T PF04762_consen  287 ER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRL  364 (928)
T ss_pred             ec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEE
Confidence            43 3322222  2  24556899999999999999877665 999976544321  1122111   111333331 1   


Q ss_pred             -----------------------------eEEEEEeCCEEEEEECccCC-CCCeeEEEecCCCCCceeEEEcCCCCEEEE
Q 020021          174 -----------------------------LVFAVAFGGYIRMFDARKYE-KGPFDIFSVGGDISDANVVKFSNDGRLMLL  223 (332)
Q Consensus       174 -----------------------------~~~~~~~~~~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~  223 (332)
                                                   ..+++..+..+.+-.++... ++|+-.+.+.- ...++.++|++++..+++
T Consensus       365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~-~~~v~~vaf~~~~~~~av  443 (928)
T PF04762_consen  365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL-PSPVNDVAFSPSNSRFAV  443 (928)
T ss_pred             EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC-CCCcEEEEEeCCCCeEEE
Confidence                                         12222222333443333221 12222222222 357899999999998999


Q ss_pred             EcCCCeEEEEEccCCeEe--------EEeee-------cCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECCC
Q 020021          224 TTMEGHIHVLDSFRGTLL--------STYNV-------KPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRS  282 (332)
Q Consensus       224 ~~~dg~i~i~d~~~~~~~--------~~~~~-------~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~~  282 (332)
                      -..||.+.+|........        ..+..       ..........++|..++..++..+.+   ..+.++++..
T Consensus       444 l~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  520 (928)
T PF04762_consen  444 LTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD  520 (928)
T ss_pred             EECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence            999999999985432211        11111       01122344567787777777666554   5788888743

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.66  E-value=2.9e-06  Score=70.94  Aligned_cols=175  Identities=9%  Similarity=-0.035  Sum_probs=113.0

Q ss_pred             EEEecCC-----CCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee-----EEEcCCCeEEEEEeCCEEEEEECccCCCC
Q 020021          126 SLSLCSS-----KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-----AAYDDQGLVFAVAFGGYIRMFDARKYEKG  195 (332)
Q Consensus       126 ~v~~~~~-----~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~vwd~~~~~~~  195 (332)
                      ++.|.|.     -.+|+.||.-|...+|.+.++.....+.-.....     ...+....++-++.|.+++++++......
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~  151 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK  151 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence            4555543     3488999999999999988665432222111110     11122334555667888888887643332


Q ss_pred             CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC-CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCc
Q 020021          196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS  274 (332)
Q Consensus       196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~  274 (332)
                      ....+    ..-..+.+++|+|++.+++-+....|-.|.+.. ++.+......+. ...-....||.....+|.+..||+
T Consensus       152 ~~~h~----~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-~D~gF~~S~s~~~~~FAv~~Qdg~  226 (344)
T KOG4532|consen  152 FAVHN----QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-SDHGFYNSFSENDLQFAVVFQDGT  226 (344)
T ss_pred             ceeec----cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-CCCceeeeeccCcceEEEEecCCc
Confidence            22111    112368899999999999999999998888754 333322222221 223346789999999999999999


Q ss_pred             EEEEECCCCceEE-----EecCCCCCCceEEeCCCe
Q 020021          275 VYAWSVRSGKEVA-----SWMSFDTEPPVIKWTPGS  305 (332)
Q Consensus       275 i~vWd~~~~~~~~-----~~~~~~~~v~~l~~sp~~  305 (332)
                      +.|||++.-..+.     +-..|++.+..+.|+|.|
T Consensus       227 ~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  227 CAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             EEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence            9999998743321     224688899999999854

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.66  E-value=2.9e-06  Score=76.70  Aligned_cols=240  Identities=14%  Similarity=0.190  Sum_probs=152.2

Q ss_pred             EEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEE
Q 020021           59 RLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS  138 (332)
Q Consensus        59 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s  138 (332)
                      ..|+..+...-..+.....++..++++|.|..+++.-.    ..|.+|+-.+...+..+.  ...|..++|+|.+++|+|
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~----~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~t   88 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA----AGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVT   88 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhc----cceEEccccchhheeeee--cCCceecccCcccceeee
Confidence            34444443333334446667888999999998887643    348899877765443333  457899999999999999


Q ss_pred             eeCCCc---------------EEEEeCCCceEEEEEEecCce-----eEEEcCCCeEEEEEeCCEEEEEEC-ccCCCCCe
Q 020021          139 GSLDRT---------------VLLWDQRAEKCQGLLRVQGRP-----AAAYDDQGLVFAVAFGGYIRMFDA-RKYEKGPF  197 (332)
Q Consensus       139 ~s~Dg~---------------i~iWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~vwd~-~~~~~~~~  197 (332)
                      -+....               +.+||+.++..+..+.....+     ...++.+..+.+--....+.++++ .+....++
T Consensus        89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~  168 (561)
T COG5354          89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPF  168 (561)
T ss_pred             eccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCch
Confidence            886544               899999999887766543322     344444454444335667888884 33333333


Q ss_pred             eEEEecCCCCCceeEEEcCCC--CEEEE-----EcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021          198 DIFSVGGDISDANVVKFSNDG--RLMLL-----TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       198 ~~~~~~~~~~~v~~v~~s~dg--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs  270 (332)
                      ....    ...+....+||.|  ..++.     .+...++++|.+..+..+.+......   .-..+-|.+.|.+|+.--
T Consensus       169 ~~lr----~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~---~~~qLkW~~~g~~ll~l~  241 (561)
T COG5354         169 KNLR----PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV---SGVQLKWQVLGKYLLVLV  241 (561)
T ss_pred             hhcc----ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee---cccEEEEecCCceEEEEE
Confidence            3222    2346677788864  33332     23456899999887776655443211   112466777777765431


Q ss_pred             C-----------CCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc
Q 020021          271 G-----------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       271 ~-----------Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      .           +.+++|.+++... +.....-.++|...+|.|.++.|++.+
T Consensus       242 ~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         242 MTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             EEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEe
Confidence            1           3468888886433 333235567899999999998877755

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.64  E-value=0.00022  Score=61.33  Aligned_cols=216  Identities=13%  Similarity=0.155  Sum_probs=127.9

Q ss_pred             EEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEec-CCCCeEEEeeCCCcEEEEeCCCceEEEEEE
Q 020021           82 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEKCQGLLR  160 (332)
Q Consensus        82 ~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~-~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~  160 (332)
                      .+|.+....+++...  ..+.|..|+..+++... +...  ...++.+. ++++. +.+..++. .++|+.+++......
T Consensus         5 p~~d~~~g~l~~~D~--~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g~l-~v~~~~~~-~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDI--PGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDGRL-YVADSGGI-AVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEETTTTEEEEEET--TTTEEEEEETTTTEEEE-EESS--SEEEEEEECTTSEE-EEEETTCE-EEEETTTTEEEEEEE
T ss_pred             eEEECCCCEEEEEEc--CCCEEEEEECCCCeEEE-EecC--CCceEEEEccCCEE-EEEEcCce-EEEecCCCcEEEEee
Confidence            456664445555432  25678888888876432 2211  16677777 56544 44445444 555998887655554


Q ss_pred             ec--C-----ceeEEEcCCCeEEEEEeC---------CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEE-EE
Q 020021          161 VQ--G-----RPAAAYDDQGLVFAVAFG---------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LL  223 (332)
Q Consensus       161 ~~--~-----~~~~~~~~~~~~~~~~~~---------~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l-~~  223 (332)
                      ..  .     .+..++++++.++.+...         +.+..++.. .   ......  ......+.++|+||++.+ ++
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~---~~~~~~--~~~~~pNGi~~s~dg~~lyv~  151 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G---KVTVVA--DGLGFPNGIAFSPDGKTLYVA  151 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S---EEEEEE--EEESSEEEEEEETTSSEEEEE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C---eEEEEe--cCcccccceEECCcchheeec
Confidence            41  1     124566777766655442         345555544 1   111111  112345889999999865 56


Q ss_pred             EcCCCeEEEEEccCCeE-e---EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceE
Q 020021          224 TTMEGHIHVLDSFRGTL-L---STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVI  299 (332)
Q Consensus       224 ~~~dg~i~i~d~~~~~~-~---~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l  299 (332)
                      -+..+.|..+|+..... +   ..+..........-.+++.++|+.+++.-..+.|.++|.. |+.+..+..-...++++
T Consensus       152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~  230 (246)
T PF08450_consen  152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC  230 (246)
T ss_dssp             ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred             ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence            78889999999863221 2   1121111111234568999999999888788999999986 88877665444578999


Q ss_pred             Ee-CCC-eeEEEec
Q 020021          300 KW-TPG-SLMFVTG  311 (332)
Q Consensus       300 ~~-sp~-~~~l~t~  311 (332)
                      +| .|+ ..+++|.
T Consensus       231 ~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  231 AFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEESTTSSEEEEEE
T ss_pred             EEECCCCCEEEEEe
Confidence            99 466 4566654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.64  E-value=3.1e-07  Score=86.19  Aligned_cols=124  Identities=21%  Similarity=0.293  Sum_probs=93.9

Q ss_pred             ceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCe-eeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           26 VGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ....+.||...|+.+.|.|+. ..++|++.|..+..||..+.. .+..+..-..+..-|.|+.-...+++.+.   .+.+
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh---g~~i  182 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH---GNDI  182 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc---CCce
Confidence            345589999999999999886 578999999999999987543 23333333334455666655555554442   4679


Q ss_pred             EEEEccC-CceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCC
Q 020021          104 RLLSLHD-NKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRA  152 (332)
Q Consensus       104 ~v~d~~~-~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~  152 (332)
                      ++||..- +.++.++++|...|..++|.. -...+.+.+.||++++||...
T Consensus       183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            9999754 568899999999999999986 345789999999999999754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.62  E-value=1.5e-05  Score=69.26  Aligned_cols=201  Identities=20%  Similarity=0.250  Sum_probs=126.6

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCC-----CcEEEEEcC-CCeeeEEeeecccceeEEEEccCCCEEEEecCCCC-
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDD-----ESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-   99 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D-----~tv~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~-   99 (332)
                      .+.|-||.      .||+||++|.|.=.|     |.|-|||+. +...+.++..+.-+.+.+.+.++++.++.+. +|. 
T Consensus        49 gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN-GGI~  121 (305)
T PF07433_consen   49 GRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN-GGIE  121 (305)
T ss_pred             CCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc-CCCc
Confidence            34455554      699999999886554     799999998 7777888888877777888999998888874 232 


Q ss_pred             ---------------CceeEEEEccCCceEEE--e--ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE
Q 020021          100 ---------------DESLRLLSLHDNKYLRY--F--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR  160 (332)
Q Consensus       100 ---------------d~~v~v~d~~~~~~~~~--~--~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~  160 (332)
                                     +.++-+.|..+|+.+..  +  .-|+..|..+++.++|..++..-+.|.-.  +   .       
T Consensus       122 Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~--~---~-------  189 (305)
T PF07433_consen  122 THPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG--D---A-------  189 (305)
T ss_pred             cCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC--c---c-------
Confidence                           34566667777776554  4  34778899999888876555544433210  0   0       


Q ss_pred             ecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC-CCeEEEEEccCCe
Q 020021          161 VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGT  239 (332)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~-dg~i~i~d~~~~~  239 (332)
                                 ...+..-..++.++..+........        -...+-+|+++++|..+++++- -+.+.+||..+++
T Consensus       190 -----------~PLva~~~~g~~~~~~~~p~~~~~~--------l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  190 -----------PPLVALHRRGGALRLLPAPEEQWRR--------LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             -----------CCeEEEEcCCCcceeccCChHHHHh--------hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence                       0011111112223333322111000        1134678999999988876664 5689999999999


Q ss_pred             EeEEeeecCCCCCcceEEEECCCCCEEEEEcC
Q 020021          240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  271 (332)
Q Consensus       240 ~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~  271 (332)
                      ++.....     .-+..++-.+++ |++|.+.
T Consensus       251 ~~~~~~l-----~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  251 LLGSVPL-----PDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             Eeecccc-----CceeeeeecCCc-eEEeCCC
Confidence            8865542     223345555666 6666654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=3.2e-07  Score=79.05  Aligned_cols=153  Identities=20%  Similarity=0.150  Sum_probs=100.8

Q ss_pred             EEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEc
Q 020021          137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS  215 (332)
Q Consensus       137 ~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s  215 (332)
                      ++.+.+-.+-+-|.+++.......-..+-+..|.. +..++.+...|.|-.+|+|..+.+.......-.|.+.++++..-
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L  307 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL  307 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence            55666677777777776533222111111112222 45677778899999999997654432222222355667766665


Q ss_pred             C-CCCEEEEEcCCCeEEEEEccCCeE---eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec
Q 020021          216 N-DGRLMLLTTMEGHIHVLDSFRGTL---LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM  290 (332)
Q Consensus       216 ~-dg~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~  290 (332)
                      . ++.++++++.+|+|++||.+--+.   +..++.+.... ...-+-..+....+++++.|...|||.+..+..+.++.
T Consensus       308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~-a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS-AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             ccccceEeeccCcCceeEeeehhhhcccceeeeecccccc-cccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            5 788999999999999999976555   66676432111 11223456788899999999999999999998877654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.57  E-value=0.00014  Score=73.78  Aligned_cols=283  Identities=15%  Similarity=0.231  Sum_probs=167.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEE----EcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLY----DVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      ..+.|-++.|-++...++.+..+|.|.+.    |..+. .+.....-..+|.+.+|+|+...++....   ++++.+.+-
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~---~~~l~~mt~  149 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTG---EGNLLLMTR  149 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeC---CCEEEEEec
Confidence            45779999999999999999999999999    44432 22333445668999999999998877653   333333211


Q ss_pred             ---------------cCCceE--------EEeec------------------------ccccEEEEEecCCCCeEEEeeC
Q 020021          109 ---------------HDNKYL--------RYFKG------------------------HHDRVVSLSLCSSKDCFISGSL  141 (332)
Q Consensus       109 ---------------~~~~~~--------~~~~~------------------------h~~~V~~v~~~~~~~~l~s~s~  141 (332)
                                     ...+.+        .-|+|                        +.+.-..++|-.||.+||..+.
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~  229 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV  229 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence                           100110        00111                        2234456889999999987774


Q ss_pred             ---C---CcEEEEeCCCceEEEEEEe-cC-ceeEEEcCCCeEEEEEeC----CEEEEEECccCCCCCeeEEEecCCCCCc
Q 020021          142 ---D---RTVLLWDQRAEKCQGLLRV-QG-RPAAAYDDQGLVFAVAFG----GYIRMFDARKYEKGPFDIFSVGGDISDA  209 (332)
Q Consensus       142 ---D---g~i~iWd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~----~~i~vwd~~~~~~~~~~~~~~~~~~~~v  209 (332)
                         +   +.+|+|+- .+....+-.. .+ .....+.|.|.++++.-.    ..|.+|.-.-.+.+.|... .......+
T Consensus       230 ~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~-~~~~~~~v  307 (928)
T PF04762_consen  230 EPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR-FDPEEEKV  307 (928)
T ss_pred             EcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC-CCCCCcee
Confidence               2   57999984 4543332221 11 234567788888877742    3555554322222222221 11233568


Q ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEEccCCeE--eEEeeecCCCCCcceEEEECCC-CCEEEEEcCCCcEEEEEC----CC
Q 020021          210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSV----RS  282 (332)
Q Consensus       210 ~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd~----~~  282 (332)
                      ..+.+++|+.+|+....|. |++|-....+-  .+++..  ........+.|+|. -..|.....+|.+..+++    ..
T Consensus       308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~--~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~  384 (928)
T PF04762_consen  308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF--SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR  384 (928)
T ss_pred             eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc--cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe
Confidence            8999999999999977554 99998776653  233332  22223334788884 344555555565654433    11


Q ss_pred             C----------------ceE--EEe-------------cCCCCCCceEEeCCCeeEEEe--ccceEEEecccccc
Q 020021          283 G----------------KEV--ASW-------------MSFDTEPPVIKWTPGSLMFVT--GSSELSFWIPDLSK  324 (332)
Q Consensus       283 ~----------------~~~--~~~-------------~~~~~~v~~l~~sp~~~~l~t--~~~d~~~w~~~~~~  324 (332)
                      +                ..+  ..+             ...+..|.+++|+++...++.  ....+.+|.++...
T Consensus       385 s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~  459 (928)
T PF04762_consen  385 SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN  459 (928)
T ss_pred             cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence            1                110  001             134677899999998854433  44448888876543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.56  E-value=2.4e-06  Score=82.16  Aligned_cols=181  Identities=15%  Similarity=0.237  Sum_probs=127.5

Q ss_pred             CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEE
Q 020021           47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS  126 (332)
Q Consensus        47 ~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~  126 (332)
                      ..++-|+.-..+.-+|+.+.+..+...-...++..+  ..+++.++++..   .++|.+-|.++.+.++++..|++.|..
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t---~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDT---RGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecc---cceEEeecCCcCceeeeeeccccceee
Confidence            445556666667777888777666555444444443  345566666654   578999999999999999999999987


Q ss_pred             EEecCCCCeEEEeeC---------CCcEEEEeCCCceEEEEEEecCcee-EEEcC--CCeEEEEEeCCEEEEEECccCCC
Q 020021          127 LSLCSSKDCFISGSL---------DRTVLLWDQRAEKCQGLLRVQGRPA-AAYDD--QGLVFAVAFGGYIRMFDARKYEK  194 (332)
Q Consensus       127 v~~~~~~~~l~s~s~---------Dg~i~iWd~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~vwd~~~~~~  194 (332)
                      ++.  .|+.|+|+|.         |.=|++||++.-+.+.-++.+.-+. ..+.|  ...++.++..|...+-|.....+
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence            655  5899999985         5568999999877665555543332 23333  33455555678888888554444


Q ss_pred             CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEE
Q 020021          195 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (332)
Q Consensus       195 ~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d  234 (332)
                      ++..++......+.+....+|+.|..++.+..+|+|.+|.
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            4444444434445688899999999999999999999997

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.7e-06  Score=77.07  Aligned_cols=238  Identities=15%  Similarity=0.156  Sum_probs=159.9

Q ss_pred             CCEEEEecCCCCCceeEEEEccC---CceEEEeecccccEEEEEecCCCCeEEEeeC-CCcEEEEeCCCceEEEEEEec-
Q 020021           88 PTTVIYSSKNGWDESLRLLSLHD---NKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQ-  162 (332)
Q Consensus        88 ~~~~~~~s~~g~d~~v~v~d~~~---~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~-  162 (332)
                      .+.++.++   .|+.++.|--..   -+.++.+..|...|.+++.+.++..+.|.+. |+.+|++|+..-.....+++. 
T Consensus        20 a~fiiqAS---lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~   96 (558)
T KOG0882|consen   20 AKFIIQAS---LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD   96 (558)
T ss_pred             hheEEeee---cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc
Confidence            34555554   488899996433   3456677889999999999999999999888 999999998765544444443 


Q ss_pred             --CceeEEEcCCC--eEEEEE--eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc
Q 020021          163 --GRPAAAYDDQG--LVFAVA--FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (332)
Q Consensus       163 --~~~~~~~~~~~--~~~~~~--~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~  236 (332)
                        +...+...++.  ..++++  .++.+.++|-+..... . .+...-|.++|..+.+++-+..+++....|.|.-|...
T Consensus        97 lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-~-~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e  174 (558)
T KOG0882|consen   97 LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-D-GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE  174 (558)
T ss_pred             CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc-c-ceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence              33344444432  233333  3588999986643211 1 12233466789999999999999999999999999876


Q ss_pred             C------CeEeEEee------ecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec--------------
Q 020021          237 R------GTLLSTYN------VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--------------  290 (332)
Q Consensus       237 ~------~~~~~~~~------~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--------------  290 (332)
                      .      .++.-.+.      ..+-......++.|+|+|..+++-+.|..|++++..+++.+..+-              
T Consensus       175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y  254 (558)
T KOG0882|consen  175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPY  254 (558)
T ss_pred             CcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccc
Confidence            2      11110110      011123344578999999999999999999999999987543320              


Q ss_pred             ------------------CCCC-CCceEEeCCCeeEEEeccc-eEEEecccccccccccc
Q 020021          291 ------------------SFDT-EPPVIKWTPGSLMFVTGSS-ELSFWIPDLSKLGAYVG  330 (332)
Q Consensus       291 ------------------~~~~-~v~~l~~sp~~~~l~t~~~-d~~~w~~~~~~~~~~~~  330 (332)
                                        .|.. .-+.+.|...+++|.-++. .+++...+..++--+.|
T Consensus       255 ~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  255 GLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILG  314 (558)
T ss_pred             ccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEec
Confidence                              1221 1244778888888888775 37777666655544444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.52  E-value=3.6e-05  Score=65.17  Aligned_cols=190  Identities=13%  Similarity=0.186  Sum_probs=103.3

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc-------cceeEEEEccCCC------EEEEecCCCCCceeE
Q 020021           38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-------YGVDLVCFTSHPT------TVIYSSKNGWDESLR  104 (332)
Q Consensus        38 ~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~------~~~~~s~~g~d~~v~  104 (332)
                      .-++||||+.+||-+..-|+|+++|+.. ..+..+....       .+|..+.|.+...      .++...   +++.++
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~---Y~G~L~  122 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN---YRGQLR  122 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe---ccceee
Confidence            4689999999999999999999999975 4444443321       2344455544321      122221   245566


Q ss_pred             EEEccC-----CceEEEe--e-cccccEEEEEecCCCCeEEEeeCC-Cc----------EEEEeCCCceEEEEEEecCce
Q 020021          105 LLSLHD-----NKYLRYF--K-GHHDRVVSLSLCSSKDCFISGSLD-RT----------VLLWDQRAEKCQGLLRVQGRP  165 (332)
Q Consensus       105 v~d~~~-----~~~~~~~--~-~h~~~V~~v~~~~~~~~l~s~s~D-g~----------i~iWd~~~~~~~~~~~~~~~~  165 (332)
                      -+-+..     .+...++  . .+...|.++.++|..+.|+-||.. ..          +..|.+-++.+       ...
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-------yyk  195 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-------YYK  195 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC-------cEE
Confidence            555422     1122222  2 346789999999988876655542 22          12222111110       000


Q ss_pred             eEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEe-cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe
Q 020021          166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (332)
                      .+...++.........+..++..+        ..+.. ......+..+..||||+.+++...+|.|.+|++.+-.++..+
T Consensus       196 ~v~~~~~~~~~~~~~~~~~~~~~~--------~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  196 QVTSSEDDITASSKRRGLLRIPSF--------KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             EccccCccccccccccceeeccce--------eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            000000000000001111222111        11211 112346788999999999999999999999999877766655


Q ss_pred             ee
Q 020021          245 NV  246 (332)
Q Consensus       245 ~~  246 (332)
                      ..
T Consensus       268 ~~  269 (282)
T PF15492_consen  268 KQ  269 (282)
T ss_pred             ch
Confidence            43

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.46  E-value=0.00028  Score=65.21  Aligned_cols=229  Identities=13%  Similarity=0.081  Sum_probs=130.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~  125 (332)
                      +..+..++.++.+..+|.++|+.+-...........-..  .+..++....   ++.+..+|.++|+.+..+........
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~~~~~~  194 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTS---NGMLQALNESDGAVKWTVNLDVPSLT  194 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECC---CCEEEEEEccCCCEeeeecCCCCccc
Confidence            446667788999999999999987655433211111011  1334555443   67899999999998776653211110


Q ss_pred             E-EEecC--CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc------------eeEEEcCCCeEEEEEeCCEEEEEECc
Q 020021          126 S-LSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR------------PAAAYDDQGLVFAVAFGGYIRMFDAR  190 (332)
Q Consensus       126 ~-v~~~~--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~i~vwd~~  190 (332)
                      . ..-+|  .+..++.++.++.+...|.++++..-.......            .....-.++.++.++.++.+..+|..
T Consensus       195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence            0 00111  134566677888888888887765443322110            00000124566667778899988886


Q ss_pred             cCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021          191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs  270 (332)
                      +.+.    .+...  .......  ..++..+..++.+|.++.+|..+|+.+=.....  ..........  .+.+|+.++
T Consensus       275 tG~~----~W~~~--~~~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~sp~v--~~g~l~v~~  342 (394)
T PRK11138        275 SGQI----VWKRE--YGSVNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LHRLLTAPVL--YNGYLVVGD  342 (394)
T ss_pred             CCCE----EEeec--CCCccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEccccc--CCCcccCCEE--ECCEEEEEe
Confidence            5431    12111  0111111  124556667778999999999988764222110  0011111111  356777889


Q ss_pred             CCCcEEEEECCCCceEEEecC
Q 020021          271 GDGSVYAWSVRSGKEVASWMS  291 (332)
Q Consensus       271 ~Dg~i~vWd~~~~~~~~~~~~  291 (332)
                      .||.+++.|..+|+.+.....
T Consensus       343 ~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        343 SEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             CCCEEEEEECCCCCEEEEEEc
Confidence            999999999999998776543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=6.9e-05  Score=68.72  Aligned_cols=221  Identities=14%  Similarity=0.199  Sum_probs=141.9

Q ss_pred             eeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCC-----------CcEEE
Q 020021           79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-----------RTVLL  147 (332)
Q Consensus        79 v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~D-----------g~i~i  147 (332)
                      -+-+.|+|.|+++++--.    .-|.+|--++-..++.+. | -.|.-++|||..++|+|-|.-           ..+.|
T Consensus       213 etyv~wSP~GTYL~t~Hk----~GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHK----QGIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeeEEecCCceEEEEEec----cceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence            456889999999887643    337888655543333332 3 357889999999999998742           47899


Q ss_pred             EeCCCceEEEEEEec--C---ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEE
Q 020021          148 WDQRAEKCQGLLRVQ--G---RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML  222 (332)
Q Consensus       148 Wd~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  222 (332)
                      ||++++.....+...  .   -+...++.++.+++.-..+.|.+++..++..  ++.  -....+.+....+||.+.+||
T Consensus       287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~l--ld~--Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFML--LDK--KSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             EEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceee--ecc--cccCCccccCcccCCCcceEE
Confidence            999999887777552  1   2456777888998888888999998754321  110  112335677888999998887


Q ss_pred             EEcCC-----CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE----------cCCCcEEEEECCCCceEE
Q 020021          223 LTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG----------SGDGSVYAWSVRSGKEVA  287 (332)
Q Consensus       223 ~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg----------s~Dg~i~vWd~~~~~~~~  287 (332)
                      -=+..     -++.+..+.+++.+++.++..   -.-..+-|-.+|.||+--          +.=..+-|+.+.......
T Consensus       363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfn---VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv  439 (698)
T KOG2314|consen  363 YWTPETNNIPARVTLMEVPSKREIRTKNLFN---VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV  439 (698)
T ss_pred             EEcccccCCcceEEEEecCccceeeecccee---eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence            54432     256677777766665544322   112234566677776532          222245566665544332


Q ss_pred             EecCCCCCCceEEeCCCeeEEEecc
Q 020021          288 SWMSFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       288 ~~~~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      .-......+...+|-|.|..+++-+
T Consensus       440 e~velke~vi~FaWEP~gdkF~vi~  464 (698)
T KOG2314|consen  440 EVVELKESVIAFAWEPHGDKFAVIS  464 (698)
T ss_pred             eeeecchheeeeeeccCCCeEEEEE
Confidence            2233456678899999987776643

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.35  E-value=5.1e-05  Score=71.58  Aligned_cols=244  Identities=13%  Similarity=0.223  Sum_probs=149.6

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee--ecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      +..-++|.||++.|.-+.|+.+...|-|...+|-|.+|-+-.|.=.....  .....|.+.+|..+|..+...-.   |+
T Consensus        61 LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe---DG  137 (1189)
T KOG2041|consen   61 LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE---DG  137 (1189)
T ss_pred             cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc---cC
Confidence            44557899999999999999988999999999999999987654332221  12344777899999988765543   55


Q ss_pred             eeEEEEccCCce-EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-------EEEEEEe-----cCc----
Q 020021          102 SLRLLSLHDNKY-LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-------CQGLLRV-----QGR----  164 (332)
Q Consensus       102 ~v~v~d~~~~~~-~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-------~~~~~~~-----~~~----  164 (332)
                      .|.|=.+..+.. -+.++|..  ...+.|++|.+.+.-+=..|.+.++|...+-       |.-....     +.+    
T Consensus       138 avIVGsvdGNRIwgKeLkg~~--l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i  215 (1189)
T KOG2041|consen  138 AVIVGSVDGNRIWGKELKGQL--LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEI  215 (1189)
T ss_pred             CEEEEeeccceecchhcchhe--ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccce
Confidence            566555543221 12233322  2468899999988888888999999965331       1111100     000    


Q ss_pred             -----eeEEEcCCCeEEEEEe-CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC---------e
Q 020021          165 -----PAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---------H  229 (332)
Q Consensus       165 -----~~~~~~~~~~~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg---------~  229 (332)
                           +.....|+.-.+++++ .|.+.+.--.+... |. ++.. +  -.+..+.++++|..+++++.+.         .
T Consensus       216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-Pv-v~dt-g--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~  290 (1189)
T KOG2041|consen  216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-PV-VVDT-G--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNK  290 (1189)
T ss_pred             eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-Ce-EEec-c--cEeecceecCCCcEEEEccCcccccCccccce
Confidence                 0111123444556665 46666653322211 11 1111 1  2456678999999999988653         4


Q ss_pred             EEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       230 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      |+.+.. -|+.+.++.   .+..+++.++|-..|-.+|-+ .|+.|++=+++.
T Consensus       291 v~Fysp-~G~i~gtlk---vpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP  338 (1189)
T KOG2041|consen  291 VHFYSP-YGHIVGTLK---VPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP  338 (1189)
T ss_pred             EEEecc-chhheEEEe---cCCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence            555543 366666665   345677778887666666655 467676665543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.33  E-value=1.4e-05  Score=67.70  Aligned_cols=113  Identities=20%  Similarity=0.263  Sum_probs=87.9

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCee--eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc-CCceE
Q 020021           38 SSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYL  114 (332)
Q Consensus        38 ~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~-~~~~~  114 (332)
                      .++.|++.+..++++-.+|.+.+-+......  .++++.|+.....+.|+.....+++..  |-|+.+.-||+. .++++
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytG--gDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTG--GDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEec--CCCceEEEEEecCCccee
Confidence            4678888899999999999988444433333  347889999999899988777666653  458999999997 34454


Q ss_pred             EE-eecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCC
Q 020021          115 RY-FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRA  152 (332)
Q Consensus       115 ~~-~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~  152 (332)
                      .. -+-|+..|.++.-+| .+..++||+.|-.|++||.+.
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence            44 567899999998776 577999999999999999873

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.31  E-value=0.00093  Score=61.78  Aligned_cols=228  Identities=14%  Similarity=0.082  Sum_probs=130.0

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc-ce-e-----EEE--EccCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKY-GV-D-----LVC--FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY  116 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~-~v-~-----~~~--~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~  116 (332)
                      +..+..++.++.+.-+|..+|+.+-....... .. .     .+.  ..-.+..++.+..   ++.+..+|.++|+.+..
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---CCEEEEEECCCCCCccc
Confidence            56888888899999999999998755433210 00 0     000  0112345555542   67899999999988776


Q ss_pred             eecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-------eeEEEcCCCeEEEEEeCCEEEEEEC
Q 020021          117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------PAAAYDDQGLVFAVAFGGYIRMFDA  189 (332)
Q Consensus       117 ~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~vwd~  189 (332)
                      ..-.. .+.+--.- .+..++.+..++.+...|.++++..-.......       ..... ..+.++....++.+..+|.
T Consensus       146 ~~~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~  222 (394)
T PRK11138        146 TKVAG-EALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLM  222 (394)
T ss_pred             ccCCC-ceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEc
Confidence            55332 22221111 245666677889999999999887655543211       01111 1345565666788887776


Q ss_pred             ccCCCCCeeEEEecCCCC-----CceeEEEcC--CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          190 RKYEKGPFDIFSVGGDIS-----DANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~-----~v~~v~~s~--dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      .+.+..-  .........     ....+..+|  .+..+..++.+|.++.+|..+|+.+=.....  .   .....  .+
T Consensus       223 ~~G~~~W--~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~---~~~~~--~~  293 (394)
T PRK11138        223 EQGQLIW--QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--S---VNDFA--VD  293 (394)
T ss_pred             cCChhhh--eeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--C---ccCcE--EE
Confidence            5432110  000000000     000011122  2344556667899999999999865332211  1   11111  25


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEE
Q 020021          263 GMFVISGSGDGSVYAWSVRSGKEVAS  288 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~~~~~~~~~  288 (332)
                      +..++.++.||.++.+|..+++.+..
T Consensus       294 ~~~vy~~~~~g~l~ald~~tG~~~W~  319 (394)
T PRK11138        294 GGRIYLVDQNDRVYALDTRGGVELWS  319 (394)
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEc
Confidence            66777788999999999999987654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.28  E-value=7.9e-06  Score=69.75  Aligned_cols=214  Identities=19%  Similarity=0.319  Sum_probs=130.3

Q ss_pred             CcEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCee-------------------------------------e-----E
Q 020021           35 GRISSMDFHKSS--SYLVTASDDESIRLYDVTAATC-------------------------------------L-----K   70 (332)
Q Consensus        35 ~~I~~i~~s~dg--~~l~tgs~D~tv~iwd~~~~~~-------------------------------------~-----~   70 (332)
                      ..|..|.|-.++  +.++-...|++|++|.+...+.                                     +     +
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            457788886544  4577788999999998643210                                     0     0


Q ss_pred             Ee-eecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC--c-eEEEeecc-----cccEEEEEecCC-CCeEEEee
Q 020021           71 TI-NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--K-YLRYFKGH-----HDRVVSLSLCSS-KDCFISGS  140 (332)
Q Consensus        71 ~~-~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~--~-~~~~~~~h-----~~~V~~v~~~~~-~~~l~s~s  140 (332)
                      .+ ..|...+.+++|..+...++++-    |-.|.+|+++-.  . .+..++.|     +.-|++..|+|. ...|...+
T Consensus       166 vyaNaH~yhiNSiS~NsD~et~lSaD----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs  241 (460)
T COG5170         166 VYANAHPYHINSISFNSDKETLLSAD----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS  241 (460)
T ss_pred             eccccceeEeeeeeecCchheeeecc----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence            11 24455566777887777776553    667889987542  2 13334444     345888899984 56788888


Q ss_pred             CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE
Q 020021          141 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL  220 (332)
Q Consensus       141 ~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  220 (332)
                      ..|+|++-|++....-             +.+..++....|+              ....-..+-...+..+.||+.|++
T Consensus       242 SkG~Ikl~DlRq~alc-------------dn~~klfe~~~D~--------------v~~~ff~eivsSISD~kFs~ngry  294 (460)
T COG5170         242 SKGEIKLNDLRQSALC-------------DNSKKLFELTIDG--------------VDVDFFEEIVSSISDFKFSDNGRY  294 (460)
T ss_pred             CCCcEEehhhhhhhhc-------------cCchhhhhhccCc--------------ccchhHHHHhhhhcceEEcCCCcE
Confidence            8999999998754210             0000011000000              000000112245778899999999


Q ss_pred             EEEEcCCCeEEEEEccCCe-EeEEeeecCC---------CCCcc---eEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          221 MLLTTMEGHIHVLDSFRGT-LLSTYNVKPV---------SRNST---LEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       221 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~---------~~~~~---~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      +++.+.. +++|||....+ ++.+...+..         ....+   ..+.||-|...+++||.....-++-.
T Consensus       295 IlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         295 ILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             EEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence            9887554 89999986532 3333321100         11222   35889999999999999888888864

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.28  E-value=9.1e-06  Score=67.71  Aligned_cols=128  Identities=16%  Similarity=0.164  Sum_probs=67.6

Q ss_pred             ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCee-eEEeeecccceeEEEEccCCCEEEEecCCCC--Cce
Q 020021           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DES  102 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~--d~~  102 (332)
                      ..++|.-|+++=.+=+.+--++.++++..|+.+-+.+.+.-.. .+.+..-...-...+.-.+++.+.+..-+-+  -.+
T Consensus        81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~  160 (319)
T KOG4714|consen   81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN  160 (319)
T ss_pred             ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence            3344555665554444555578899999999999998864211 1112111111111222233333332211000  123


Q ss_pred             eEEEEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCc
Q 020021          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAE  153 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~  153 (332)
                      .+.|++...+.+..-..-.+.|.+++-+| +...++.|+.||.+-+||++..
T Consensus       161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~  212 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV  212 (319)
T ss_pred             eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc
Confidence            45555543322211122233488888888 4557778888999999998754

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.27  E-value=0.00012  Score=69.66  Aligned_cols=240  Identities=14%  Similarity=0.174  Sum_probs=153.9

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC----------EEEEecCCCCCceeEEE
Q 020021           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT----------TVIYSSKNGWDESLRLL  106 (332)
Q Consensus        37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~s~~g~d~~v~v~  106 (332)
                      -.++.|+|.| ++|=|+.. .|-+-|..+.+.++.++-|+..|..+.|.|-+-          .++.++ +...+.|.+|
T Consensus        18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs-aD~~GrIil~   94 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS-ADISGRIILV   94 (1062)
T ss_pred             ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEe-ccccCcEEEE
Confidence            6688999977 77767654 467779999999999999999999999876332          223333 2346889999


Q ss_pred             EccCCceEEEeecccccEEEEEecC---CC-CeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcC--CCeEEEE
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCS---SK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDD--QGLVFAV  178 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~---~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~  178 (332)
                      |...+..+..+..|.++|..++|-+   +. ..|+.-..-.++.+|+..++...-.......+  +..++|  ...+...
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence            9999988899999999999999874   33 35555566779999998888755433332222  122222  2233334


Q ss_pred             EeCCEEEEEECccCC--CCCeeEEEecCC--------------------CCC------ceeEEEcCCCCEEEEEcCCCeE
Q 020021          179 AFGGYIRMFDARKYE--KGPFDIFSVGGD--------------------ISD------ANVVKFSNDGRLMLLTTMEGHI  230 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~--~~~~~~~~~~~~--------------------~~~------v~~v~~s~dg~~l~~~~~dg~i  230 (332)
                      +..|.+-+-+..-..  ..+.+.+....+                    ...      .-..+|+|.-+-++.......+
T Consensus       175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prel  254 (1062)
T KOG1912|consen  175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPREL  254 (1062)
T ss_pred             ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccce
Confidence            445554444322111  001111100000                    000      1124678888888888888899


Q ss_pred             EEEEccCCeEeEEeeecCCCCCcceEEEECCCC--CEEEEEcCCCcEEEEECCC
Q 020021          231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG--MFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg--~~l~sgs~Dg~i~vWd~~~  282 (332)
                      .++|+.-.+.+....   ..++.+--+.+-||+  ..|++.-.||.+.+|-.+.
T Consensus       255 lv~dle~~~~l~vvp---ier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  255 LVFDLEYECCLAVVP---IERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEEcchhhceeEEEE---eccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            999987766665544   333433345555654  6899999999999996543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.26  E-value=6.8e-06  Score=68.44  Aligned_cols=94  Identities=12%  Similarity=0.200  Sum_probs=68.9

Q ss_pred             cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce-EEEeecccccEEEEEecC-CCC
Q 020021           57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFKGHHDRVVSLSLCS-SKD  134 (332)
Q Consensus        57 tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~-~~~~~~h~~~V~~v~~~~-~~~  134 (332)
                      ..++|++...+.+-.-......|+.+|-+|....++.+..  -|+.+-+||+.+... ...++.|+++|+.+.|+| ++.
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~  237 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE  237 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence            3456665433222111112234888999998888777643  388999999987654 456789999999999999 678


Q ss_pred             eEEEeeCCCcEEEEeCCC
Q 020021          135 CFISGSLDRTVLLWDQRA  152 (332)
Q Consensus       135 ~l~s~s~Dg~i~iWd~~~  152 (332)
                      .|.+++.||.+-.||.++
T Consensus       238 ~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  238 HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             heeEecCCCcEEEEcCCC
Confidence            999999999999999764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.22  E-value=0.0033  Score=55.58  Aligned_cols=247  Identities=14%  Similarity=0.156  Sum_probs=143.0

Q ss_pred             EEEECCCCCEEEEEeC----------CCcEEEEEcCCCeeeEEeeec---ccc----eeEEEEccCCCEEEEecCCCCCc
Q 020021           39 SMDFHKSSSYLVTASD----------DESIRLYDVTAATCLKTINSK---KYG----VDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        39 ~i~~s~dg~~l~tgs~----------D~tv~iwd~~~~~~~~~~~~~---~~~----v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      .+.+|||++.+.+++.          .--|.+||..+......+.-.   ...    .....++.+++.++..... --.
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T-Pa~  118 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT-PAT  118 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES-SSE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC-CCC
Confidence            3567899998877552          235889999998887755322   111    2346778888877664321 245


Q ss_pred             eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC-CceEEEEEEe---c-Cce---eEEE-cCC
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRV---Q-GRP---AAAY-DDQ  172 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~-~~~~~~~~~~---~-~~~---~~~~-~~~  172 (332)
                      +|-|-|++.++.+..+.-- + +..+ +-..++.|.+-|.||++.-..+. .++.......   . ..+   ...+ ...
T Consensus       119 SVtVVDl~~~kvv~ei~~P-G-C~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~  195 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDTP-G-CWLI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG  195 (342)
T ss_dssp             EEEEEETTTTEEEEEEEGT-S-EEEE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred             eEEEEECCCCceeeeecCC-C-EEEE-EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence            7889999888877655421 1 1111 11123578899999998888776 4444311110   0 000   1122 234


Q ss_pred             CeEEEEEeCCEEEEEECccCCCCCeeEEEecC--------CCCCceeEEEcCCC-CEEEEE--cCCC-------eEEEEE
Q 020021          173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDG-RLMLLT--TMEG-------HIHVLD  234 (332)
Q Consensus       173 ~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~--------~~~~v~~v~~s~dg-~~l~~~--~~dg-------~i~i~d  234 (332)
                      +.++..++.|.|+-.|+..........+++..        .+..-..+++++.. ++++..  +.++       .|.++|
T Consensus       196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D  275 (342)
T PF06433_consen  196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD  275 (342)
T ss_dssp             TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred             CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence            45666788888888777543321112222110        01234567887644 444432  2222       499999


Q ss_pred             ccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEEE-cCCCcEEEEECCCCceEEEecCCC
Q 020021          235 SFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG-SGDGSVYAWSVRSGKEVASWMSFD  293 (332)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sg-s~Dg~i~vWd~~~~~~~~~~~~~~  293 (332)
                      +.+++.+.++.+.    ..+.++..|.|.+ +|++. ..++.+.|||..+++.++++....
T Consensus       276 ~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  276 LKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG  332 (342)
T ss_dssp             TTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred             CCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence            9999999888753    3455788888876 55444 457999999999999998876544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.19  E-value=0.0014  Score=62.88  Aligned_cols=125  Identities=14%  Similarity=0.190  Sum_probs=91.0

Q ss_pred             cccceeEeccCCCcEEEEEECCCC------------CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCC--
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSS------------SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP--   88 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg------------~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--   88 (332)
                      ++++++++.-|+..|+.|.|.|..            -+||++.-.|.|.+||+..+..+..+..+..++..+||.+..  
T Consensus        44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~  123 (1062)
T KOG1912|consen   44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD  123 (1062)
T ss_pred             hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence            466777888899999999998642            256777778999999999988888888888888888887633  


Q ss_pred             -CEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEe
Q 020021           89 -TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWD  149 (332)
Q Consensus        89 -~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd  149 (332)
                       +.++.+-. | .+++.+|+..+|+.+....--.....++.+.| |.+.|.--+..|-+.+-+
T Consensus       124 Srd~LlaIh-~-ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~  184 (1062)
T KOG1912|consen  124 SRDVLLAIH-G-SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCK  184 (1062)
T ss_pred             chheeEEec-C-CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEe
Confidence             23333322 2 46899999999988777665555566677777 666665555556655554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.15  E-value=1.8e-05  Score=68.49  Aligned_cols=149  Identities=15%  Similarity=0.174  Sum_probs=98.9

Q ss_pred             EEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC-----ceEEEeecccccE
Q 020021           50 VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-----KYLRYFKGHHDRV  124 (332)
Q Consensus        50 ~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~-----~~~~~~~~h~~~V  124 (332)
                      ++.|.+-.+-+-|+++|.... +. ....|...-|...++.++.+..   ++.|.+.|+..+     .+...+ -|...|
T Consensus       228 fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcR---ngeI~~iDLR~rnqG~~~~a~rl-yh~Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCR---NGEIFVIDLRCRNQGNGWCAQRL-YHDSSV  301 (425)
T ss_pred             ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEeccc---CCcEEEEEeeecccCCCcceEEE-EcCcch
Confidence            778888888998998875432 22 2233555566666666776665   567999998654     233333 388899


Q ss_pred             EEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEE---EEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEE
Q 020021          125 VSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQG---LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF  200 (332)
Q Consensus       125 ~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~  200 (332)
                      +++..-. ++..|++.+++|+|++||.+.-+|..   ....+...                                   
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~-----------------------------------  346 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL-----------------------------------  346 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccc-----------------------------------
Confidence            9988766 67889999999999999998776622   11111000                                   


Q ss_pred             EecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021          201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       201 ~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (332)
                            ..-.-+.+.+....+++++.|-..+||.++.|+++.++.
T Consensus       347 ------~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  347 ------SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             ------ccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence                  001112344555667778888888899988888887654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.0004  Score=67.02  Aligned_cols=196  Identities=15%  Similarity=0.170  Sum_probs=121.1

Q ss_pred             EecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCC--CeEEEEEeCC-----EEEEEECccCCC-C-C
Q 020021          128 SLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQ--GLVFAVAFGG-----YIRMFDARKYEK-G-P  196 (332)
Q Consensus       128 ~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~-----~i~vwd~~~~~~-~-~  196 (332)
                      ++++.+..+|-|+.||.|.+.+-+ -+...-++.....  ...+..+  ..+++++.|+     .+++||+...+. . |
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            456788899999999999887632 2222233221111  1122222  3566666552     689999876522 1 2


Q ss_pred             eeE-----EEec--CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC-eEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021          197 FDI-----FSVG--GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (332)
Q Consensus       197 ~~~-----~~~~--~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~v~~spdg~~l~s  268 (332)
                      ..+     +...  ....++.++++|.+-..+|+|-.+|.|..+.-+-- ..-...........+++.++|-.|+.-++=
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            222     1211  12457889999999999999999999998763210 000011111234568889999888876222


Q ss_pred             EcCCCcEEEEECCCCce-EEEecCCCCCCceEEeCCCeeEE-EeccceEEEecccccc
Q 020021          269 GSGDGSVYAWSVRSGKE-VASWMSFDTEPPVIKWTPGSLMF-VTGSSELSFWIPDLSK  324 (332)
Q Consensus       269 gs~Dg~i~vWd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l-~t~~~d~~~w~~~~~~  324 (332)
                      +..-..|.++.+....+ ...+..|....+|-+|++....| +++++-+.+++.+..+
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRG  246 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcc
Confidence            23345699999974442 34466777888999999977645 4455559999876543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.12  E-value=0.00015  Score=67.22  Aligned_cols=73  Identities=27%  Similarity=0.457  Sum_probs=58.0

Q ss_pred             CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc--eEEEeccccccc
Q 020021          251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLSKL  325 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~--d~~~w~~~~~~~  325 (332)
                      ...+.+++++|+...++.|..||+|.+||...+  +..+....-.++.++|||+|..++.|+.  ++++||..+..+
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCCC--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            356778999999999999999999999998664  3334444456789999999999988876  488888765543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.10  E-value=0.0047  Score=56.20  Aligned_cols=95  Identities=13%  Similarity=0.156  Sum_probs=62.0

Q ss_pred             CCCCCEEEEE---------eCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           43 HKSSSYLVTA---------SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        43 s~dg~~l~tg---------s~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      |||+++++..         +..+.+-|||+++++....... ...+....|+|++..+++..    ++.+.+.++.+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~----~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR----DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE----TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe----cCceEEEECCCCCe
Confidence            5788777653         2346789999998766543333 44577789999999998885    57899998877754


Q ss_pred             EEE-eecc----------------cccEEEEEecCCCCeEEEeeCC
Q 020021          114 LRY-FKGH----------------HDRVVSLSLCSSKDCFISGSLD  142 (332)
Q Consensus       114 ~~~-~~~h----------------~~~V~~v~~~~~~~~l~s~s~D  142 (332)
                      .+. ..|-                .+.-.++-||||+++|+..-.|
T Consensus        76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            432 2220                1112457799999999888654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.10  E-value=0.0036  Score=59.71  Aligned_cols=172  Identities=11%  Similarity=0.097  Sum_probs=98.6

Q ss_pred             CceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC----cEEEEeCCCceEEEEEEecCceeEEEcCCCeE
Q 020021          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR----TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  175 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (332)
                      .+.+.+.|.++.+....+.-- ..-..++++++|+++.+.+.+.    ++..-+.........+....  ...+.+++..
T Consensus       214 ~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--iea~vkdGK~  290 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--IEEAVKAGKF  290 (635)
T ss_pred             eEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--HHHhhhCCCE
Confidence            456667777766554443321 1334567888888887776422    23332222211111111111  0111233443


Q ss_pred             EEEEeCCEEEEEECccCC---CCCeeEEEecCCCCCceeEEEcCCCCEEEEE-cCCCeEEEEEccCCeE-----------
Q 020021          176 FAVAFGGYIRMFDARKYE---KGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTL-----------  240 (332)
Q Consensus       176 ~~~~~~~~i~vwd~~~~~---~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~-~~dg~i~i~d~~~~~~-----------  240 (332)
                      ... .++.|.+.|.++..   ......+.++   .....+.+||||++++++ ..+.++.++|..+.+.           
T Consensus       291 ~~V-~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~  366 (635)
T PRK02888        291 KTI-GGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA  366 (635)
T ss_pred             EEE-CCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence            333 36789999987610   1112222222   234678999999987765 5689999999977442           


Q ss_pred             -eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          241 -LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       241 -~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                       ..+...    .....-.+|.++|+-+.|--.|..|-.||+.+
T Consensus       367 vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        367 VVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEeecc----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence             222221    11223478999999888889999999999976

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.08  E-value=0.0086  Score=57.02  Aligned_cols=234  Identities=15%  Similarity=0.186  Sum_probs=131.2

Q ss_pred             CEEEEEeCCCcEEEEEcCCCeeeEEeeecccc-----ee-EEEEccCCCEEEEecCC------CCCceeEEEEccCCceE
Q 020021           47 SYLVTASDDESIRLYDVTAATCLKTINSKKYG-----VD-LVCFTSHPTTVIYSSKN------GWDESLRLLSLHDNKYL  114 (332)
Q Consensus        47 ~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~~~~~s~~------g~d~~v~v~d~~~~~~~  114 (332)
                      ..++.++.|+.|.-+|.++|+.+-.+......     +. ...+.  +..++.++..      +.++.+..+|.++|+.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            57777889999999999999988665433210     11 01111  2334444321      23578888999999987


Q ss_pred             EEeecccc--------------------cEE-EEEecCCCCeEEEeeCCC------------------cEEEEeCCCceE
Q 020021          115 RYFKGHHD--------------------RVV-SLSLCSSKDCFISGSLDR------------------TVLLWDQRAEKC  155 (332)
Q Consensus       115 ~~~~~h~~--------------------~V~-~v~~~~~~~~l~s~s~Dg------------------~i~iWd~~~~~~  155 (332)
                      ..+.....                    .|. ...+.+.+.+++.++.|+                  .+...|.++++.
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            76653211                    011 123333456677676554                  788889998887


Q ss_pred             EEEEEecCce--------e-EEEc---CCC----eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC
Q 020021          156 QGLLRVQGRP--------A-AAYD---DQG----LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (332)
Q Consensus       156 ~~~~~~~~~~--------~-~~~~---~~~----~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  219 (332)
                      .-.++.....        . ....   -++    .++.+..+|.+...|.++.+.  +-.....     ...++.+| +.
T Consensus       269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~--~W~~~~~-----~~~~~~~~-~~  340 (488)
T cd00216         269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL--ISARPEV-----EQPMAYDP-GL  340 (488)
T ss_pred             EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE--eeEeEee-----ccccccCC-ce
Confidence            7665432110        0 1110   112    244455678898888876532  1111110     01123333 33


Q ss_pred             EEEE-----------------EcCCCeEEEEEccCCeEeEEeeecCCC-C----CcceEEEECCCCCEEEEEcCCCcEEE
Q 020021          220 LMLL-----------------TTMEGHIHVLDSFRGTLLSTYNVKPVS-R----NSTLEASFSPEGMFVISGSGDGSVYA  277 (332)
Q Consensus       220 ~l~~-----------------~~~dg~i~i~d~~~~~~~~~~~~~~~~-~----~~~~~v~~spdg~~l~sgs~Dg~i~v  277 (332)
                      +++.                 ...+|.+..+|+.+|+.+=+....... .    .+...-.....+..|+.++.||.++.
T Consensus       341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a  420 (488)
T cd00216         341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA  420 (488)
T ss_pred             EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence            3332                 124678889999888866333321000 0    01100011126678899999999999


Q ss_pred             EECCCCceEEEec
Q 020021          278 WSVRSGKEVASWM  290 (332)
Q Consensus       278 Wd~~~~~~~~~~~  290 (332)
                      +|..+|+.+....
T Consensus       421 ld~~tG~~lW~~~  433 (488)
T cd00216         421 FDATTGKELWKFR  433 (488)
T ss_pred             EECCCCceeeEEE
Confidence            9999999887754

The alignment model contains an 8-bladed beta-propeller.

>smart00320 WD40 WD40 repeats

Probab=98.02  E-value=1.5e-05  Score=45.96  Aligned_cols=38  Identities=34%  Similarity=0.639  Sum_probs=34.6

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD   62 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd   62 (332)
                      +..+.+.+|...|.++.|++++.++++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45677889999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.00036  Score=61.76  Aligned_cols=83  Identities=13%  Similarity=0.187  Sum_probs=70.3

Q ss_pred             eeEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           27 GMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      ...+.+|...|..++|||..+ ++..++.+.+|+|.|+++..+...+..+ ..+.++||..+....+++..  .++.|.+
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl--~nG~Vlv  262 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGL--QNGMVLV  262 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEec--cCceEEE
Confidence            336788999999999999887 7888999999999999999999888887 57899999998887777643  3678999


Q ss_pred             EEccCCc
Q 020021          106 LSLHDNK  112 (332)
Q Consensus       106 ~d~~~~~  112 (332)
                      +|+...+
T Consensus       263 yD~R~~~  269 (463)
T KOG1645|consen  263 YDMRQPE  269 (463)
T ss_pred             EEccCCC
Confidence            9997644

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.01  E-value=0.0056  Score=58.49  Aligned_cols=179  Identities=15%  Similarity=0.143  Sum_probs=104.6

Q ss_pred             ecCCCCeEE-EeeCCCcEEEEeCCCceEEEEEEecCce-eEEEcCCCeEEEEE-e----CCEEEEEECccCCCCCeeEEE
Q 020021          129 LCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVA-F----GGYIRMFDARKYEKGPFDIFS  201 (332)
Q Consensus       129 ~~~~~~~l~-s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~----~~~i~vwd~~~~~~~~~~~~~  201 (332)
                      +.+||+.+. +.-..+.+.+.|.++.+....+.....+ ...+++++..+.+. +    +.++...+....  .....+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~--d~~vvfn  277 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER--DWVVVFN  277 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccC--ceEEEEc
Confidence            455676543 3334566777787776666666555443 34555555544433 2    133444433211  1111111


Q ss_pred             ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC-----CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC-CCcE
Q 020021          202 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-----GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DGSV  275 (332)
Q Consensus       202 ~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~-Dg~i  275 (332)
                      ..      ...++.++|++...  .+++|.++|..+     .+.+..+..    ......+++||||++++.++. +.++
T Consensus       278 i~------~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV----GKsPHGV~vSPDGkylyVanklS~tV  345 (635)
T PRK02888        278 IA------RIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV----PKNPHGVNTSPDGKYFIANGKLSPTV  345 (635)
T ss_pred             hH------HHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC----CCCccceEECCCCCEEEEeCCCCCcE
Confidence            10      01134567877665  367899999987     344443321    234457899999998887754 8899


Q ss_pred             EEEECCCCce------------EEEecCCCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          276 YAWSVRSGKE------------VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       276 ~vWd~~~~~~------------~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                      .|.|+.+.+.            +... .......+.+|.++|+...|-.-|  +--|+.+.
T Consensus       346 SVIDv~k~k~~~~~~~~~~~~vvaev-evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        346 TVIDVRKLDDLFDGKIKPRDAVVAEP-ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEEChhhhhhhhccCCccceEEEee-ccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            9999987552            2222 224456789999999877775444  66677654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.98  E-value=0.0032  Score=63.27  Aligned_cols=228  Identities=14%  Similarity=0.178  Sum_probs=127.5

Q ss_pred             ceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE
Q 020021           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  157 (332)
Q Consensus        78 ~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~  157 (332)
                      .|..+.|..++..+..+..   .+.|.+.|.++.. +.....-.+.|.+++|+||...++-...++++.+-+-. =.++.
T Consensus        70 ~i~s~~fl~d~~~i~v~~~---~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~  144 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITA---LGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIA  144 (1265)
T ss_pred             ceEEEEEecccceEEEEec---CCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence            5666777777777666654   4567777776643 33334456789999999999999988888887764321 00111


Q ss_pred             EEEecCceeEEEcCCCeEEEEEeCC---EEEEEECccCCCCCeeEEEecC---CCCCceeEEEcCCCCEEEEE-----cC
Q 020021          158 LLRVQGRPAAAYDDQGLVFAVAFGG---YIRMFDARKYEKGPFDIFSVGG---DISDANVVKFSNDGRLMLLT-----TM  226 (332)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~---~i~vwd~~~~~~~~~~~~~~~~---~~~~v~~v~~s~dg~~l~~~-----~~  226 (332)
                      ...+    .+...+.+..+.++.+.   ..+.=--|.....+...-...+   ....-..|++--||.++++.     ..
T Consensus       145 E~~L----~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  145 EKPL----DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG  220 (1265)
T ss_pred             cccc----ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence            1111    00111223344444432   1111000000000000000000   11233568899999999883     23


Q ss_pred             CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE---cCCCcEEEEECCCCceEEE----ecCCCCCCceE
Q 020021          227 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG---SGDGSVYAWSVRSGKEVAS----WMSFDTEPPVI  299 (332)
Q Consensus       227 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg---s~Dg~i~vWd~~~~~~~~~----~~~~~~~v~~l  299 (332)
                      .+.|++||.. |.+-..-+.   ..+.-..++|-|.|..+|+-   +.|..|.++.- +|..-..    +.....++..|
T Consensus       221 ~RkirV~drE-g~Lns~se~---~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L  295 (1265)
T KOG1920|consen  221 TRKIRVYDRE-GALNSTSEP---VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEEL  295 (1265)
T ss_pred             ceeEEEeccc-chhhcccCc---ccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchhee
Confidence            3799999976 544322111   11122368999999999987   44667999975 4443222    23334458999


Q ss_pred             EeCCCeeEEEecc----ce-EEEec
Q 020021          300 KWTPGSLMFVTGS----SE-LSFWI  319 (332)
Q Consensus       300 ~~sp~~~~l~t~~----~d-~~~w~  319 (332)
                      +|+.++..|+..-    .+ +++|.
T Consensus       296 ~Wns~sdiLAv~~~~~e~~~v~lwt  320 (1265)
T KOG1920|consen  296 AWNSNSDILAVVTSNLENSLVQLWT  320 (1265)
T ss_pred             eecCCCCceeeeecccccceEEEEE
Confidence            9999998887722    23 78874

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.97  E-value=0.015  Score=53.98  Aligned_cols=190  Identities=16%  Similarity=0.173  Sum_probs=99.6

Q ss_pred             eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec------CceeE-----EEc
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ------GRPAA-----AYD  170 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~------~~~~~-----~~~  170 (332)
                      .|++|+.. |+.+..+.--.+.|.++.|.. ...|+....||+++++|+....   .+.+.      ....+     .+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECC-CCeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccC
Confidence            47777763 344444433338999999987 4567778899999999986443   12111      11111     111


Q ss_pred             CCCeEEEEEeCCEEEEEE-CccCCC-CCe-eEEE----ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE
Q 020021          171 DQGLVFAVAFGGYIRMFD-ARKYEK-GPF-DIFS----VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST  243 (332)
Q Consensus       171 ~~~~~~~~~~~~~i~vwd-~~~~~~-~~~-~~~~----~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~  243 (332)
                      ..|.++ ...++.+.+.. ...... ..+ ....    ............++.+....+....++.+++.+....+.   
T Consensus       137 ~~Givv-Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---  212 (410)
T PF04841_consen  137 KNGIVV-LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---  212 (410)
T ss_pred             CCCEEE-ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence            233333 23333333322 111000 000 0000    000111111134555666666666666777555332211   


Q ss_pred             eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC-CCCCceEEeCCC
Q 020021          244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPG  304 (332)
Q Consensus       244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~-~~~v~~l~~sp~  304 (332)
                      .    ...+++..++.||+|+++|.-..+|.+.|.+..-.+.+..+... ...+..+.|--+
T Consensus       213 i----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  213 I----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             c----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence            1    12356788999999999999999999999986555555444332 234556666444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.96  E-value=7e-06  Score=78.92  Aligned_cols=187  Identities=19%  Similarity=0.279  Sum_probs=125.3

Q ss_pred             EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcC--CC-eEEEEE-eCC-EEEEEE
Q 020021          114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD--QG-LVFAVA-FGG-YIRMFD  188 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~-~~~-~i~vwd  188 (332)
                      .++++.|+..-++++|+.+.++|+-|+..|.|++++..++........++.+.....|  ++ ..++.+ +.. -..+|+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            4567889999999999999999999999999999999988776665555444333322  33 344433 333 467888


Q ss_pred             CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecC-CCCCcceEEEECCCCCEEE
Q 020021          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVI  267 (332)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~v~~spdg~~l~  267 (332)
                      +...- ++.+.+      ..-.++.||..-..-+.|+......+||..++..+.++-... .....-..+.|||+...++
T Consensus      1174 ~~s~~-~~~Hsf------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1174 ASSTG-GPRHSF------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             ccccc-Cccccc------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            76421 111111      234567888765555667666788999999998877642211 1112223568999999988


Q ss_pred             EEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          268 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       268 sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                         .||  -+||++..+.++.|-.++-. -.=.|+|.|..++.-+.
T Consensus      1247 ---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE 1286 (1516)
T ss_pred             ---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech
Confidence               566  37999888777766444311 11238999999988765

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.00081  Score=64.51  Aligned_cols=175  Identities=11%  Similarity=0.152  Sum_probs=106.6

Q ss_pred             CCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee
Q 020021           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  166 (332)
Q Consensus        87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~  166 (332)
                      ++..++.+..   ++.+.+.+.....  .+...|...      .-+|.+++|||.||+|.|-.+-+.+.           
T Consensus        48 ~~~~~~~GtH---~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-----------  105 (846)
T KOG2066|consen   48 HDKFFALGTH---RGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-----------  105 (846)
T ss_pred             hcceeeeccc---cceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-----------
Confidence            4456666654   5567777754422  333334332      34688999999999988865433221           


Q ss_pred             EEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-----CCEEEEEcCCCeEEEEEccCCeEe
Q 020021          167 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-----GRLMLLTTMEGHIHVLDSFRGTLL  241 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-----g~~l~~~~~dg~i~i~d~~~~~~~  241 (332)
                                       +..+|..                -++.+++++||     .+.+++|+..| +.++.-.=-...
T Consensus       106 -----------------~~~~df~----------------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk  151 (846)
T KOG2066|consen  106 -----------------ITQYDFK----------------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK  151 (846)
T ss_pred             -----------------ceeEecC----------------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence                             1112211                23567788887     36688888888 666542110001


Q ss_pred             EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCC------CCceEEeCCCeeEEEeccceE
Q 020021          242 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT------EPPVIKWTPGSLMFVTGSSEL  315 (332)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~------~v~~l~~sp~~~~l~t~~~d~  315 (332)
                      ..... ....+++.++.|  -|.++|=++.+| |+|+|+.+++.+..+.....      ...++.|.++.++++-=+..+
T Consensus       152 ~~v~l-~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v  227 (846)
T KOG2066|consen  152 DSVVL-SEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSV  227 (846)
T ss_pred             cceee-ecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeE
Confidence            11111 123467778888  788999998888 99999999888776543222      236688988877666555557


Q ss_pred             EEeccc
Q 020021          316 SFWIPD  321 (332)
Q Consensus       316 ~~w~~~  321 (332)
                      ++....
T Consensus       228 ~i~~I~  233 (846)
T KOG2066|consen  228 KICSIK  233 (846)
T ss_pred             EEEEEe
Confidence            776554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.00035  Score=67.33  Aligned_cols=111  Identities=12%  Similarity=0.218  Sum_probs=80.1

Q ss_pred             CcEEEEEECCCCCEEEEEeC----CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC-CceeEEEEcc
Q 020021           35 GRISSMDFHKSSSYLVTASD----DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-DESLRLLSLH  109 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~----D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~-d~~v~v~d~~  109 (332)
                      +.-+-++|+|..+++|.++-    -|+|.|| +++|+...... .+..+.++||+|..-  +.+.  || -+.+-+|.-+
T Consensus        16 avsti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~--vLa~--gwe~g~~~v~~~~   89 (1416)
T KOG3617|consen   16 AVSTISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEF--VLAQ--GWEMGVSDVQKTN   89 (1416)
T ss_pred             ccccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHH--HHhh--ccccceeEEEecC
Confidence            33344678999999988774    4788888 46676432221 122345688987643  3322  33 3568889887


Q ss_pred             CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC
Q 020021          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR  151 (332)
Q Consensus       110 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~  151 (332)
                      +.+.......|+.+|..++|+++|..++|+..=|.+.+|...
T Consensus        90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            776666667899999999999999999999999999999764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.92  E-value=0.012  Score=53.02  Aligned_cols=261  Identities=13%  Similarity=0.121  Sum_probs=110.0

Q ss_pred             EECCCCCEE-EEEeCCCc--EEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEe
Q 020021           41 DFHKSSSYL-VTASDDES--IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (332)
Q Consensus        41 ~~s~dg~~l-~tgs~D~t--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~  117 (332)
                      +|.+||+.| +.+..|+.  +.+-|+.+++..+...+........++++..+.+++-..   ...++..|+.+.+....+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~---~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN---GRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET---TTEEEEEETTT--EEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC---CCeEEEEECCcCcEEEEE
Confidence            467888665 44555654  555578888876655443222334566777777766432   347888899888766555


Q ss_pred             ecccccEEEEEe--cCCCCeEEEeeC---C-------------------CcEEEEeCCCceEEEEEEecCce-eEEEcC-
Q 020021          118 KGHHDRVVSLSL--CSSKDCFISGSL---D-------------------RTVLLWDQRAEKCQGLLRVQGRP-AAAYDD-  171 (332)
Q Consensus       118 ~~h~~~V~~v~~--~~~~~~l~s~s~---D-------------------g~i~iWd~~~~~~~~~~~~~~~~-~~~~~~-  171 (332)
                      .-....+-...|  +.++..++-.-.   |                   ..|.--|+++++....+....-. =..++| 
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            555555443333  344554432211   1                   11222244444433333222100 112222 


Q ss_pred             -CCeEEEEEeC---C-EEEEEECccCCCCCeeEEEecCCCC--CceeEEEcCCCCEEEEE-----cCCCeEEEEEccCCe
Q 020021          172 -QGLVFAVAFG---G-YIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLT-----TMEGHIHVLDSFRGT  239 (332)
Q Consensus       172 -~~~~~~~~~~---~-~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~v~~s~dg~~l~~~-----~~dg~i~i~d~~~~~  239 (332)
                       +..+..|-.+   . .-|+|-++......   ..+..+..  .+.---|+|||..+.--     +.+..|.-+|+.+++
T Consensus       199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~---~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNV---KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             EEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             CCCEEEEeccCCcceeceEEEEEEcCCCcc---eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence             2333334432   2 23677655322111   11111111  11112478999866432     223467778888876


Q ss_pred             EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC----------------cEEEEECCCCceEEEecCCC----------
Q 020021          240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG----------------SVYAWSVRSGKEVASWMSFD----------  293 (332)
Q Consensus       240 ~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg----------------~i~vWd~~~~~~~~~~~~~~----------  293 (332)
                      .......     ..+.-.-.++||++++-=+.|.                -|+++++..++... +..|.          
T Consensus       276 ~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~  349 (386)
T PF14583_consen  276 RRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDR  349 (386)
T ss_dssp             EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTBS
T ss_pred             ceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCC
Confidence            5332221     1233345678998876544442                56778887766432 21121          


Q ss_pred             C-CCceEEeCCCeeEEEeccc
Q 020021          294 T-EPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       294 ~-~v~~l~~sp~~~~l~t~~~  313 (332)
                      . .-+..+|+||+++++-.|.
T Consensus       350 q~~hPhp~FSPDgk~VlF~Sd  370 (386)
T PF14583_consen  350 QVTHPHPSFSPDGKWVLFRSD  370 (386)
T ss_dssp             STT----EE-TTSSEEEEEE-
T ss_pred             ccCCCCCccCCCCCEEEEECC
Confidence            1 1356899999998876654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.91  E-value=0.013  Score=51.23  Aligned_cols=246  Identities=11%  Similarity=0.116  Sum_probs=128.0

Q ss_pred             EEEECCC-CCEEEEEeCCC-cEEEEEcCCCeeeEEeeecccce--eEEEEccCCCEEEEecCC--CCCceeEEEEcc-CC
Q 020021           39 SMDFHKS-SSYLVTASDDE-SIRLYDVTAATCLKTINSKKYGV--DLVCFTSHPTTVIYSSKN--GWDESLRLLSLH-DN  111 (332)
Q Consensus        39 ~i~~s~d-g~~l~tgs~D~-tv~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~s~~--g~d~~v~v~d~~-~~  111 (332)
                      .++.+|. +..++-+-.-| ...+||..+++.++.+......-  --.+|+++++.+++.-.+  .-.+.|-|||.. +-
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            4566774 45556666665 46788999999887765433221  125899999988876432  114679999998 44


Q ss_pred             ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec-CceeEEEcCCCeEEEEEeCCE-EEEEEC
Q 020021          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAFGGY-IRMFDA  189 (332)
Q Consensus       112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-i~vwd~  189 (332)
                      +.+..+..|--.--.+.+.||++.|+-+-.  =|.- +..+++.  .+.+. ..+...       +.=..+|. +.-|.+
T Consensus        89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANG--GI~T-hpd~GR~--kLNl~tM~psL~-------~ld~~sG~ll~q~~L  156 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMPDGETLVVANG--GIET-HPDSGRA--KLNLDTMQPSLV-------YLDARSGALLEQVEL  156 (305)
T ss_pred             EEEeEecCCCcChhhEEEcCCCCEEEEEcC--CCcc-CcccCce--ecChhhcCCceE-------EEecCCCceeeeeec
Confidence            445555554333345678899976665521  1110 0111110  00000 001111       11011111 111111


Q ss_pred             ccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCe-------EEEEEccCCeEeEEeeec----CCCCCcceEEE
Q 020021          190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-------IHVLDSFRGTLLSTYNVK----PVSRNSTLEAS  258 (332)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~----~~~~~~~~~v~  258 (332)
                      .           ...+...++-++++++|..+...=..|.       +.+++.  ++.+..+...    ....+.+-+|+
T Consensus       157 p-----------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa  223 (305)
T PF07433_consen  157 P-----------PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIA  223 (305)
T ss_pred             C-----------ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEE
Confidence            0           0112234556677777766554433222       223322  2212222110    11235677899


Q ss_pred             ECCCCCEEEEEcC-CCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc
Q 020021          259 FSPEGMFVISGSG-DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       259 ~spdg~~l~sgs~-Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      +++++.+++..|- -+.+.+||..+++.+....-..  +-.|+-.+++ +++|.+
T Consensus       224 ~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  224 ADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--ACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             EeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--eeeeeecCCc-eEEeCC
Confidence            9999988866655 5689999999999887643222  2345555555 444443

>smart00320 WD40 WD40 repeats

Probab=97.90  E-value=3.9e-05  Score=44.06  Aligned_cols=38  Identities=34%  Similarity=0.573  Sum_probs=34.1

Q ss_pred             ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEe
Q 020021          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD  149 (332)
Q Consensus       112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd  149 (332)
                      +++..+..|...|.++.|++.+..+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.90  E-value=0.00033  Score=65.11  Aligned_cols=72  Identities=19%  Similarity=0.292  Sum_probs=59.0

Q ss_pred             CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       206 ~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      .+.+.+++++|+.+.++.|..||.|.+||...+..... .    ..-....++|+|+|.+++.|+.-|.+.+||+.-
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K----AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e----ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            46789999999999999999999999999876643322 1    112334689999999999999999999999964

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.018  Score=52.90  Aligned_cols=219  Identities=15%  Similarity=0.154  Sum_probs=140.6

Q ss_pred             EEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021           38 SSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY  116 (332)
Q Consensus        38 ~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~  116 (332)
                      ..+.+++.++ ..++...+..|.+.|..+.++.+...-.. ....+++.++++.++.+..+..++++.+.|-.+++.+.+
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            4667888887 56667777999999988888887765544 456788999998888776432478899999988887776


Q ss_pred             eecccccEEEEEecCCCCeEE-EeeCCCcEEEEeCCCceEEE-E----E-EecCceeEEEcCCCeEEEEEeC----CEEE
Q 020021          117 FKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQG-L----L-RVQGRPAAAYDDQGLVFAVAFG----GYIR  185 (332)
Q Consensus       117 ~~~h~~~V~~v~~~~~~~~l~-s~s~Dg~i~iWd~~~~~~~~-~----~-~~~~~~~~~~~~~~~~~~~~~~----~~i~  185 (332)
                      ...-..+ ..+++.|++..+. +-..++++.+.|.+...... .    . .........+++++..+.+..+    +.+.
T Consensus       156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~  234 (381)
T COG3391         156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL  234 (381)
T ss_pred             EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence            5443345 8899999998554 44578999999977665442 1    1 1112234455666654444432    4677


Q ss_pred             EEECccCCCCCeeE-EEecCCCCCceeEEEcCCCCEEEEE-cCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          186 MFDARKYEKGPFDI-FSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       186 vwd~~~~~~~~~~~-~~~~~~~~~v~~v~~s~dg~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      ..|......  +.. ... +.. ....+.++|+|+.+-+. ...+.+.+.|..+..+................+++.+.
T Consensus       235 ~id~~~~~v--~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         235 KIDTATGNV--TATDLPV-GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             EEeCCCceE--EEecccc-ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            777654321  100 011 111 23568899999988777 44589999998887776554332222233444555443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.0023  Score=61.59  Aligned_cols=153  Identities=10%  Similarity=0.167  Sum_probs=101.8

Q ss_pred             eccCCCcEEEEEECCC-------------CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccC-----CCEE
Q 020021           30 FRDYNGRISSMDFHKS-------------SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-----PTTV   91 (332)
Q Consensus        30 l~~h~~~I~~i~~s~d-------------g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~   91 (332)
                      |.-|.|.|.-..+.-.             |.+++|||.||+|.|-.+.+.+...++..+. ++.+++++|+     .+.+
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~r-piksial~Pd~~~~~sk~f  132 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKR-PIKSIALHPDFSRQQSKQF  132 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecCC-cceeEEeccchhhhhhhhe
Confidence            6778888877666544             9999999999999999998877776665543 5778899887     3345


Q ss_pred             EEecCCCCCceeEEEEcc--CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-----
Q 020021           92 IYSSKNGWDESLRLLSLH--DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-----  164 (332)
Q Consensus        92 ~~~s~~g~d~~v~v~d~~--~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-----  164 (332)
                      +++..   -+ +.++.-.  ..+-...+..-.++|.++.|.  |+++|=++.+|. +++|..+++.+..+..+..     
T Consensus       133 v~GG~---ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv-~vyd~~~~~~l~~i~~p~~~~R~e  205 (846)
T KOG2066|consen  133 VSGGM---AG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGV-KVYDTPTRQRLTNIPPPSQSVRPE  205 (846)
T ss_pred             eecCc---ce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCc-EEEeccccceeeccCCCCCCCCcc
Confidence            65532   33 4444311  111111355567889999996  567777776665 9999988876665543321     


Q ss_pred             ---eeEEEcCCCeEEEEEeCCEEEEEECcc
Q 020021          165 ---PAAAYDDQGLVFAVAFGGYIRMFDARK  191 (332)
Q Consensus       165 ---~~~~~~~~~~~~~~~~~~~i~vwd~~~  191 (332)
                         +-..+. +...+..|...+|++..++.
T Consensus       206 ~fpphl~W~-~~~~LVIGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  206 LFPPHLHWQ-DEDRLVIGWGDSVKICSIKK  234 (846)
T ss_pred             cCCCceEec-CCCeEEEecCCeEEEEEEec
Confidence               112222 33445578888999998873

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.84  E-value=0.0019  Score=59.88  Aligned_cols=182  Identities=16%  Similarity=0.195  Sum_probs=102.1

Q ss_pred             ceeEEEEccCCCEEEEecCCCCC-ceeEEEEccCCceEEEe--ecccccEEEEEecCCCCeEE-EeeCCCcEEEE--eCC
Q 020021           78 GVDLVCFTSHPTTVIYSSKNGWD-ESLRLLSLHDNKYLRYF--KGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLW--DQR  151 (332)
Q Consensus        78 ~v~~~~~~~~~~~~~~~s~~g~d-~~v~v~d~~~~~~~~~~--~~h~~~V~~v~~~~~~~~l~-s~s~Dg~i~iW--d~~  151 (332)
                      .+..-.|++++..+++.+...-. ..+.++|+++++....+  .++.   ..-+|+|||+.|+ +...||...+|  |+.
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            34445678888877666443323 46888999887754433  3333   3457999998654 66778876666  333


Q ss_pred             CceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC-C--
Q 020021          152 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--  228 (332)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-g--  228 (332)
                      .+........                                         .+.   -..=.+||||+.++..+.. |  
T Consensus       271 ~~~~~~Lt~~-----------------------------------------~gi---~~~Ps~spdG~~ivf~Sdr~G~p  306 (425)
T COG0823         271 GKNLPRLTNG-----------------------------------------FGI---NTSPSWSPDGSKIVFTSDRGGRP  306 (425)
T ss_pred             CCcceecccC-----------------------------------------Ccc---ccCccCCCCCCEEEEEeCCCCCc
Confidence            3321000000                                         000   0012589999988876554 3  


Q ss_pred             eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-Cc--EEEEECCCCceEEEecCCCCCCceEEeCCCe
Q 020021          229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-GS--VYAWSVRSGKEVASWMSFDTEPPVIKWTPGS  305 (332)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-g~--i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~  305 (332)
                      .|.+.|+..+.. ..+.....  +.. .-.+||||++++-.+.. |.  |.+.|+.++..+. ....+.....-+|.|++
T Consensus       307 ~I~~~~~~g~~~-~riT~~~~--~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng  381 (425)
T COG0823         307 QIYLYDLEGSQV-TRLTFSGG--GNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNG  381 (425)
T ss_pred             ceEEECCCCCce-eEeeccCC--CCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCC
Confidence            477777665544 22222111  111 34689999999988753 44  6666666655322 22333333445677777


Q ss_pred             eEEEec
Q 020021          306 LMFVTG  311 (332)
Q Consensus       306 ~~l~t~  311 (332)
                      ++++..
T Consensus       382 ~~i~~~  387 (425)
T COG0823         382 RMIMFS  387 (425)
T ss_pred             ceEEEe
Confidence            766543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.0025  Score=56.62  Aligned_cols=83  Identities=10%  Similarity=0.178  Sum_probs=64.1

Q ss_pred             eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEE
Q 020021           69 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLL  147 (332)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~i  147 (332)
                      .+-+..+...|..++|+|....++..+  ..++.|++.|+++......+..| +.+++++|..+.. ++..|-..|.|.+
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~a--sl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLA--SLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeee--ccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            333445555678899999988654433  24789999999999888888878 8999999998766 5556668999999


Q ss_pred             EeCCCce
Q 020021          148 WDQRAEK  154 (332)
Q Consensus       148 Wd~~~~~  154 (332)
                      +|++...
T Consensus       263 yD~R~~~  269 (463)
T KOG1645|consen  263 YDMRQPE  269 (463)
T ss_pred             EEccCCC
Confidence            9998654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.005  Score=57.42  Aligned_cols=182  Identities=14%  Similarity=0.147  Sum_probs=93.7

Q ss_pred             EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE-CccCC
Q 020021          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD-ARKYE  193 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd-~~~~~  193 (332)
                      +.+....-....+.++|+++.++- +.||.-.++.....+..  ....+. ..++...+.++..-..+.|.++. .....
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k--~~G~g~-~~vw~~~n~yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK--AFGSGL-SFVWSSRNRYAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE--EEEE-S-EEEE-TSSEEEEE-TTS-EEEEETTEE-T
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc--ccCcee-EEEEecCccEEEEECCCeEEEEEcCcccc
Confidence            344445556788999999987766 66777777763322221  122222 34555556655555578888863 32211


Q ss_pred             CCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC
Q 020021          194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  273 (332)
Q Consensus       194 ~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg  273 (332)
                         ...+...   ..+..+ | + |.++...+.+ .|.+||..+++.+.++..     ..+..|.||++|.++|-.+.| 
T Consensus       102 ---~k~i~~~---~~~~~I-f-~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-  165 (443)
T PF04053_consen  102 ---VKSIKLP---FSVEKI-F-G-GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-  165 (443)
T ss_dssp             ---T-----S---S-EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--
T ss_pred             ---ceEEcCC---cccceE-E-c-CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-
Confidence               1111111   012222 2 2 8877777555 899999999999887763     236789999999999999755 


Q ss_pred             cEEEEECCCC-----------ceEEEecCCCCCCceEEeCCCeeEEEeccceEEE
Q 020021          274 SVYAWSVRSG-----------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF  317 (332)
Q Consensus       274 ~i~vWd~~~~-----------~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~  317 (332)
                      +++|.+....           .......-....|.+..|..|- ++-|...-+++
T Consensus       166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~-fiYtT~~~lkY  219 (443)
T PF04053_consen  166 SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDC-FIYTTSNHLKY  219 (443)
T ss_dssp             SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTE-EEEE-TTEEEE
T ss_pred             eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCE-EEEEcCCeEEE
Confidence            6888886443           0233332225578888888773 33333224544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.67  E-value=0.029  Score=51.69  Aligned_cols=269  Identities=14%  Similarity=0.110  Sum_probs=131.0

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC----
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----  111 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~----  111 (332)
                      .|+.++|.++..-|+.|-..|.|-||....++.-.  ...........+.+-     .    ..+..-.+-|+...    
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~-----~----~~~~~~~l~di~~r~~~~   71 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF-----S----LNNSPGKLTDISDRAPPS   71 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S-----------GGGSS-SEEE-GGG--TT
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc-----c----ccCCCcceEEehhhCCcc
Confidence            58999999999899999999999999765332111  000000000000000     0    00111222333221    


Q ss_pred             -----ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC---------c-e-----eEEEcC
Q 020021          112 -----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---------R-P-----AAAYDD  171 (332)
Q Consensus       112 -----~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~---------~-~-----~~~~~~  171 (332)
                           .+...++..+++|++++.+.= .+++.|..+|.+.+-|+|....+..-....         . .     ...+..
T Consensus        72 ~~~gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~  150 (395)
T PF08596_consen   72 LKEGFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG  150 (395)
T ss_dssp             -SEEEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred             cccccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence                 133445556889999998743 489999999999999999887655433222         0 0     112233


Q ss_pred             CC---eEEEEE-eCCEEEEEECccCCCCCeeEEE--ec-CCCCCceeE-EEcCC-C-------------------CEEEE
Q 020021          172 QG---LVFAVA-FGGYIRMFDARKYEKGPFDIFS--VG-GDISDANVV-KFSND-G-------------------RLMLL  223 (332)
Q Consensus       172 ~~---~~~~~~-~~~~i~vwd~~~~~~~~~~~~~--~~-~~~~~v~~v-~~s~d-g-------------------~~l~~  223 (332)
                      ++   ..+.++ ..|.+.+|.+.-...+.+....  .. .+...+..+ .|+.+ |                   .-++.
T Consensus       151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV  230 (395)
T PF08596_consen  151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV  230 (395)
T ss_dssp             SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred             CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence            33   333344 4589988887522222232111  10 122233322 23222 1                   12455


Q ss_pred             EcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE-----CCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC----C
Q 020021          224 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF-----SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD----T  294 (332)
Q Consensus       224 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~-----spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~----~  294 (332)
                      ...+..|+++...+.+..+....   ....+..+.+     ...+..|++-..+|.|+++.+..-+.+....-..    .
T Consensus       231 vvSe~~irv~~~~~~k~~~K~~~---~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~  307 (395)
T PF08596_consen  231 VVSESDIRVFKPPKSKGAHKSFD---DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR  307 (395)
T ss_dssp             EE-SSEEEEE-TT---EEEEE-S---S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred             EEcccceEEEeCCCCcccceeec---cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence            55677899999887766543321   1112223344     2367788888999999999999988877654322    2


Q ss_pred             CCceEEeCCCeeEEEec-cceEEEec
Q 020021          295 EPPVIKWTPGSLMFVTG-SSELSFWI  319 (332)
Q Consensus       295 ~v~~l~~sp~~~~l~t~-~~d~~~w~  319 (332)
                      .....+++++|..+.-. -.+..++.
T Consensus       308 ~~~~ssis~~Gdi~~~~gpsE~~l~s  333 (395)
T PF08596_consen  308 RLSSSSISRNGDIFYWTGPSEIQLFS  333 (395)
T ss_dssp             HHTT-EE-TTS-EEEE-SSSEEEEEE
T ss_pred             cccccEECCCCCEEEEeCcccEEEEE
Confidence            23557788888776554 44655554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.0087  Score=58.19  Aligned_cols=194  Identities=17%  Similarity=0.248  Sum_probs=111.4

Q ss_pred             EEEEccCCCEEEEecCCCCCceeEEEEccCCce-EEEeeccccc-EEEEEecCCCCeEEEeeCCCc-----EEEEeCCC-
Q 020021           81 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFKGHHDR-VVSLSLCSSKDCFISGSLDRT-----VLLWDQRA-  152 (332)
Q Consensus        81 ~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~-~~~~~~h~~~-V~~v~~~~~~~~l~s~s~Dg~-----i~iWd~~~-  152 (332)
                      .-|+.+.+..++.++.   ++  +||-++++-. ++.++.+... |..+....+...|++.+.|+.     +++||++. 
T Consensus        28 isc~~s~~~~vvigt~---~G--~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   28 ISCCSSSTGSVVIGTA---DG--RVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             eeEEcCCCceEEEeec---cc--cEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            3467777778888764   34  4444544433 3677777777 444444444568999988765     89999753 


Q ss_pred             -----ceEEEEEEe-----c--C--ceeEEEcCCCeEEEEEe-CCEEEEEE--CccCCCCCeeEEEecCCCCCceeEEEc
Q 020021          153 -----EKCQGLLRV-----Q--G--RPAAAYDDQGLVFAVAF-GGYIRMFD--ARKYEKGPFDIFSVGGDISDANVVKFS  215 (332)
Q Consensus       153 -----~~~~~~~~~-----~--~--~~~~~~~~~~~~~~~~~-~~~i~vwd--~~~~~~~~~~~~~~~~~~~~v~~v~~s  215 (332)
                           +.|....+.     +  .  .+....+.+-..+++|+ +|.|..+.  +...+ +....+...+ ..+|+.+++-
T Consensus       103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr-gsr~~~~~~~-~~pITgL~~~  180 (933)
T KOG2114|consen  103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR-GSRQDYSHRG-KEPITGLALR  180 (933)
T ss_pred             CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc-ccceeeeccC-CCCceeeEEe
Confidence                 334322221     1  1  12344455556667776 68888773  32211 1112222222 2579999999


Q ss_pred             CCCCEEEEEcCCCeEEEEEccCCeE-eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          216 NDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       216 ~dg~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                      .|++.++......+|.+|.+....+ ...+.   .+.....+.+|++....+++|+. ..+++++....+.
T Consensus       181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld---~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLD---NNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGP  247 (933)
T ss_pred             cCCceeEEEEecceeEEEEecCCCcceeeec---cCCccceeeecCCCCccEEEecC-ceEEEEcCCCcce
Confidence            9998744444555788888763221 11122   33445556778776654555543 4588888764433

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.65  E-value=0.0022  Score=62.57  Aligned_cols=173  Identities=18%  Similarity=0.305  Sum_probs=115.2

Q ss_pred             CCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCC-eEE
Q 020021           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG-LVF  176 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~  176 (332)
                      |.-..+..+|+.+.+..+...--...|+-+.  .+++.+..|..-|+|.+-|.++-+.+.++..+......++-.| .++
T Consensus       154 g~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLi  231 (1118)
T KOG1275|consen  154 GLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLI  231 (1118)
T ss_pred             chhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEE
Confidence            3345566778877766555543343455443  4578999999999999999999888888877665555565444 566


Q ss_pred             EEEe---------CCEEEEEECccCCC-CCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccC-CeE-eEE
Q 020021          177 AVAF---------GGYIRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFR-GTL-LST  243 (332)
Q Consensus       177 ~~~~---------~~~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~-~~~-~~~  243 (332)
                      ++|.         |..|+|||+|.++. .++.+     + ..-.-+.|.|.- +.+++.+..|..++.|..+ +.. ...
T Consensus       232 tCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-----~-~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~  305 (1118)
T KOG1275|consen  232 TCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-----P-YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGV  305 (1118)
T ss_pred             EeecccccccccccchhhhhhhhhhhccCCccc-----c-cCchhhhhcccccceEEEEecccceeeccccccCCCccce
Confidence            6664         35789999997642 11111     0 112345677654 4577888889999988322 111 223


Q ss_pred             eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEE
Q 020021          244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS  279 (332)
Q Consensus       244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd  279 (332)
                      +...+. ...+...++|++++.+|-|..+|.|.+|.
T Consensus       306 ~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  306 KMVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eEEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence            333222 23367789999999999999999999997

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.64  E-value=0.032  Score=47.82  Aligned_cols=214  Identities=12%  Similarity=0.190  Sum_probs=105.4

Q ss_pred             eeEeccCCCcEEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeeeEEeeeccc-ceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           27 GMSFRDYNGRISSMDFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKKY-GVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~-l~tgs~D~tv~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      .+.+.+-...+++|+|+|+.+. ++.....+.|...+. +|+.++.+..... -...+++..++..++..   ..++.+.
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~---Er~~~L~   89 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSE---ERDQRLY   89 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEE---TTTTEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEE---cCCCcEE
Confidence            4567787888999999998665 555666677777776 5788887765432 25567776666444433   2256777


Q ss_pred             EEEccCCc---eE---EEe-----ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCC
Q 020021          105 LLSLHDNK---YL---RYF-----KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG  173 (332)
Q Consensus       105 v~d~~~~~---~~---~~~-----~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  173 (332)
                      +.++....   ..   ..+     ..++..+-+++|.+.++.|+.+-...-.+++.++.-.                   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-------------------  150 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-------------------  150 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-------------------
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-------------------
Confidence            77763321   11   111     1244557888888877777666544444444332100                   


Q ss_pred             eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC-
Q 020021          174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-  251 (332)
Q Consensus       174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-  251 (332)
                            ....+.+.+......       ......+..++++.|. |++++.+..+..+..+| .+|+.+..+.+..... 
T Consensus       151 ------~~~~~~~~~~~~~~~-------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~g  216 (248)
T PF06977_consen  151 ------GGFDLFVSDDQDLDD-------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHG  216 (248)
T ss_dssp             -------SS--EEEE-HHHH--------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG
T ss_pred             ------Cccceeecccccccc-------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccC
Confidence                  000111111100000       0011134567888774 67888888899999999 6788777666543211 


Q ss_pred             -----CcceEEEECCCCCEEEEEcCCCcEEEE
Q 020021          252 -----NSTLEASFSPEGMFVISGSGDGSVYAW  278 (332)
Q Consensus       252 -----~~~~~v~~spdg~~l~sgs~Dg~i~vW  278 (332)
                           .-.-.++|.++|+..++. +-...+++
T Consensus       217 l~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  217 LSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             -SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             cccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence                 112358999988766654 44455544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.62  E-value=0.095  Score=53.22  Aligned_cols=199  Identities=12%  Similarity=0.204  Sum_probs=119.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc----cC
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL----HD  110 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~----~~  110 (332)
                      +.|.++.|..+++.++-+..+|.|.+=|.++... .....-..+|...+|+|+...++....   .+++.+-.-    -.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~---~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITG---RQTLLFMTKDFEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeC---CcEEEEEeccccchh
Confidence            6899999999999998999999999988876432 222334567899999999988776643   233332211    00


Q ss_pred             -----------CceE--------EEeec---------------------ccccEEEEEecCCCCeEEEee----CC-CcE
Q 020021          111 -----------NKYL--------RYFKG---------------------HHDRVVSLSLCSSKDCFISGS----LD-RTV  145 (332)
Q Consensus       111 -----------~~~~--------~~~~~---------------------h~~~V~~v~~~~~~~~l~s~s----~D-g~i  145 (332)
                                 ++.+        ..|+|                     -.+.=+.++|-.||.+||...    .+ ++|
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI  224 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence                       0000        01111                     111123588889999888732    34 899


Q ss_pred             EEEeCCCceEEEEEE--ecCceeEEEcCCCeEEEEEe----CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC
Q 020021          146 LLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (332)
Q Consensus       146 ~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  219 (332)
                      ++||-+ +....+-.  ........+-|.|..+++..    ++.|.+|.-.-...+.+.+.- .-+...+..++++.++.
T Consensus       225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELAWNSNSD  302 (1265)
T ss_pred             EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheeeecCCCC
Confidence            999965 33222111  11123456667776666542    467888864322223222111 01112378899999999


Q ss_pred             EEEE---EcCCCeEEEEEccCCe
Q 020021          220 LMLL---TTMEGHIHVLDSFRGT  239 (332)
Q Consensus       220 ~l~~---~~~dg~i~i~d~~~~~  239 (332)
                      .+++   ......|++|-....+
T Consensus       303 iLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  303 ILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ceeeeecccccceEEEEEecCeE
Confidence            9988   4455569999875543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.51  E-value=0.043  Score=51.30  Aligned_cols=227  Identities=12%  Similarity=0.130  Sum_probs=111.4

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE-
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL-  106 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~-  106 (332)
                      +.+....-....++++|+|+.++. ..|+.-.||..........  +   .....+|.+.+. ++....   .++|+++ 
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--G---~g~~~vw~~~n~-yAv~~~---~~~I~I~k   95 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--G---SGLSFVWSSRNR-YAVLES---SSTIKIYK   95 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--E---E-SEEEE-TSSE-EEEE-T---TS-EEEEE
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc--C---ceeEEEEecCcc-EEEEEC---CCeEEEEE
Confidence            345555566889999999988876 7788888888544333221  1   123467777554 333322   4578885 


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEE
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRM  186 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  186 (332)
                      +.+... .+.++-. ..+..+-  + |..|...+.+ .|.+||+.+++.+..+..+....+.+++++.+++...+..+.+
T Consensus        96 n~~~~~-~k~i~~~-~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~i  169 (443)
T PF04053_consen   96 NFKNEV-VKSIKLP-FSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYI  169 (443)
T ss_dssp             TTEE-T-T-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred             cCcccc-ceEEcCC-cccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEE
Confidence            443322 1122211 1222222  2 7766666554 8999999999888777655445677888888888888888888


Q ss_pred             EECccC------CCC---CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021          187 FDARKY------EKG---PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (332)
Q Consensus       187 wd~~~~------~~~---~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v  257 (332)
                      ++....      ..+   .+.....  -...|.+.+|-.|  .++-.+.. +++-  +..|+.-....    -..+..-+
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~----ld~~~yll  238 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAH----LDKPLYLL  238 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-----SS--EEE
T ss_pred             EEecchhcccccccCchhceEEEEE--ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEE----cCCceEEE
Confidence            764321      000   2222221  0245667777655  44444444 6665  44454321111    12344445


Q ss_pred             EECCCCCEEEEEcCCCcEEEEECC
Q 020021          258 SFSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       258 ~~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                      .+.|..+.+.....|+.+..+.+.
T Consensus       239 gy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  239 GYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEETTTTEEEEE-TT--EEEEE--
T ss_pred             EEEccCCEEEEEECCCCEEEEEEC
Confidence            666766677777777777777664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.46  E-value=0.043  Score=48.71  Aligned_cols=119  Identities=15%  Similarity=0.183  Sum_probs=72.3

Q ss_pred             CCceeEEEcCCCCEEEEEcC-----------CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc-CCCc
Q 020021          207 SDANVVKFSNDGRLMLLTTM-----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGS  274 (332)
Q Consensus       207 ~~v~~v~~s~dg~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs-~Dg~  274 (332)
                      ...+.+...|+|++.+....           -|.++.+|. .+..+....   .+-...+.++||||++.|+.+. ..+.
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~---~~~~~~NGla~SpDg~tly~aDT~~~~  186 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD---DDLTIPNGLAFSPDGKTLYVADTPANR  186 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec---CcEEecCceEECCCCCEEEEEeCCCCe
Confidence            35577889999998776544           134666664 344433222   1112334689999998777774 4578


Q ss_pred             EEEEECCC--Cce-----EEEecCCCCCCceEEeCCCeeEEEeccc---eEEEeccccccccccc
Q 020021          275 VYAWSVRS--GKE-----VASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSFWIPDLSKLGAYV  329 (332)
Q Consensus       275 i~vWd~~~--~~~-----~~~~~~~~~~v~~l~~sp~~~~l~t~~~---d~~~w~~~~~~~~~~~  329 (332)
                      |+-+++..  +..     ...+....+..-.++...+|.+.+.+..   .+.+|+|+...+++++
T Consensus       187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~  251 (307)
T COG3386         187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIK  251 (307)
T ss_pred             EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEE
Confidence            88887752  111     1112223445555777777777744322   6999999977777664

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.44  E-value=0.0063  Score=56.50  Aligned_cols=97  Identities=21%  Similarity=0.301  Sum_probs=60.2

Q ss_pred             eEEEcCCCCEEEEEc-CCC--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC-CC--cEEEEECCCCc
Q 020021          211 VVKFSNDGRLMLLTT-MEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DG--SVYAWSVRSGK  284 (332)
Q Consensus       211 ~v~~s~dg~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~-Dg--~i~vWd~~~~~  284 (332)
                      .-+|||||+.++... .||  .|+++|+..++... +...   ......=.|+|||++++=.|. .|  .|.+.+.....
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~---~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~  317 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNG---FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ  317 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccC---CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence            347999998877654 444  58888887766433 2211   111123479999998887754 34  55666665443


Q ss_pred             eEEEecCCCCCCceEEeCCCeeEEEecc
Q 020021          285 EVASWMSFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       285 ~~~~~~~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                       +..++.....-..-.|||||++++..+
T Consensus       318 -~~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         318 -VTRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             -eeEeeccCCCCcCccCCCCCCEEEEEe
Confidence             333333333334677999999887766

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.41  E-value=0.063  Score=45.47  Aligned_cols=112  Identities=13%  Similarity=0.081  Sum_probs=74.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~  125 (332)
                      ..+++.||..+.++--|..+|+.+-...-. ..+.+-+.. -+++++.+..   .+-+.+.+.++|.....+..-. .|.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy---~g~lYfl~~~tGs~~w~f~~~~-~vk   96 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY---SGGLYFLCVKTGSQIWNFVILE-TVK   96 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc---cCcEEEEEecchhheeeeeehh-hhc
Confidence            467888999999999999988876432211 112221111 3556777765   4568888999987666555322 222


Q ss_pred             -EEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC
Q 020021          126 -SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG  163 (332)
Q Consensus       126 -~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~  163 (332)
                       .....+++..+.-++.|++...-|.++..|+-..+..+
T Consensus        97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG  135 (354)
T KOG4649|consen   97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG  135 (354)
T ss_pred             cceEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence             22344678899999999999999999988876555444

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.29  E-value=0.079  Score=52.62  Aligned_cols=220  Identities=18%  Similarity=0.240  Sum_probs=122.8

Q ss_pred             CCEEEEecCCCCCceeEEEEccCCceEEEeeccccc-EEEEEecCC-------CCeEEEeeCCCcEEEEeCCCce--EEE
Q 020021           88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-VVSLSLCSS-------KDCFISGSLDRTVLLWDQRAEK--CQG  157 (332)
Q Consensus        88 ~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~-V~~v~~~~~-------~~~l~s~s~Dg~i~iWd~~~~~--~~~  157 (332)
                      .+.++..... -.+.+.-.|++.|+.+..+.-|... |..+  .|+       +.....|=.+..+..||+|-..  ++.
T Consensus       492 d~~mil~~~~-~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~  568 (794)
T PF08553_consen  492 DRNMILLDPN-NPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD  568 (794)
T ss_pred             ccceEeecCC-CCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence            3344444321 2467888899999999999887754 5544  443       3345667778889999988542  221


Q ss_pred             --EEEec---CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021          158 --LLRVQ---GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (332)
Q Consensus       158 --~~~~~---~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i  232 (332)
                        .....   ...+.+...+|.++.++.+|.||+||-. ..+.+..+.   +--.+|..|..+.||+.+++.+.. .+.+
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp---~lG~pI~~iDvt~DGkwilaTc~t-yLlL  643 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP---GLGDPIIGIDVTADGKWILATCKT-YLLL  643 (794)
T ss_pred             ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC---CCCCCeeEEEecCCCcEEEEeecc-eEEE
Confidence              00111   1234555677888888889999999932 222221111   222578999999999987766544 5556


Q ss_pred             EEcc--CC----e-------------EeEEeeecCCCC--------C--cceEEEECC----CCCEEEEEcCCCcEEEEE
Q 020021          233 LDSF--RG----T-------------LLSTYNVKPVSR--------N--STLEASFSP----EGMFVISGSGDGSVYAWS  279 (332)
Q Consensus       233 ~d~~--~~----~-------------~~~~~~~~~~~~--------~--~~~~v~~sp----dg~~l~sgs~Dg~i~vWd  279 (332)
                      ++..  .|    +             ....+.+.+.|.        .  ..+..-|+-    ..+.|+|. ....+-+||
T Consensus       644 i~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~Ivts-tG~f~v~Wn  722 (794)
T PF08553_consen  644 IDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTS-TGPFVVTWN  722 (794)
T ss_pred             EEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEe-ccCEEEEEE
Confidence            6642  11    0             111122222111        1  111223431    34455544 567899999


Q ss_pred             CCC---Cc-eEEEecCCCCCCce--EEeCCCeeEEEeccceEE
Q 020021          280 VRS---GK-EVASWMSFDTEPPV--IKWTPGSLMFVTGSSELS  316 (332)
Q Consensus       280 ~~~---~~-~~~~~~~~~~~v~~--l~~sp~~~~l~t~~~d~~  316 (332)
                      +..   +. ....++.....|.+  ..|..|...+++--.||.
T Consensus       723 f~kV~~g~~~~Y~ikry~~~V~~dnF~fg~d~~vival~~dV~  765 (794)
T PF08553_consen  723 FKKVKRGKKDPYQIKRYDENVVADNFKFGSDKNVIVALPNDVN  765 (794)
T ss_pred             HHHHhCCCCCceEEEEcCCceEEccceeCCCCcEEEEccchhh
Confidence            954   22 22334444445543  446666666666555543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.26  E-value=0.16  Score=47.15  Aligned_cols=246  Identities=15%  Similarity=0.124  Sum_probs=123.2

Q ss_pred             cEEEEEECCCCCEEEEE-eCC----CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC--------Cce
Q 020021           36 RISSMDFHKSSSYLVTA-SDD----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--------DES  102 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tg-s~D----~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~--------d~~  102 (332)
                      .+...++||||+++|-+ +..    .++++.|+.+++.+...-... ....++|.++++.+++...+..        ...
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999987633 333    469999999997765321111 1223899999998888764331        445


Q ss_pred             eEEEEccCCce--EEEeeccccc--EEEEEecCCCCeEEEe-eCC---CcEEEEeCCCc-----eEEEEEE-ecCceeEE
Q 020021          103 LRLLSLHDNKY--LRYFKGHHDR--VVSLSLCSSKDCFISG-SLD---RTVLLWDQRAE-----KCQGLLR-VQGRPAAA  168 (332)
Q Consensus       103 v~v~d~~~~~~--~~~~~~h~~~--V~~v~~~~~~~~l~s~-s~D---g~i~iWd~~~~-----~~~~~~~-~~~~~~~~  168 (332)
                      |..|.+.+...  ...+.+....  ...+..++|+++++.. ...   ..+.+-|...+     ....... .......+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            78888876543  3455554433  5678889999976543 332   23666676653     2221211 11221222


Q ss_pred             EcCCCeEEEEEeC----CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE-cCCC--eEEEEEccCCeEe
Q 020021          169 YDDQGLVFAVAFG----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEG--HIHVLDSFRGTLL  241 (332)
Q Consensus       169 ~~~~~~~~~~~~~----~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~-~~dg--~i~i~d~~~~~~~  241 (332)
                      ...++.++..+.+    +.|...++...........-. .+...+....++..+.+++.. ..++  .|+++|+..+...
T Consensus       284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~  362 (414)
T PF02897_consen  284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES  362 (414)
T ss_dssp             EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred             EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEE
Confidence            2234444433332    455556665443211111111 122223333444445444444 4443  6888998734444


Q ss_pred             EEeeecCCCCCcceEEEECCCCC-EEEEEcC---CCcEEEEECCCCce
Q 020021          242 STYNVKPVSRNSTLEASFSPEGM-FVISGSG---DGSVYAWSVRSGKE  285 (332)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~spdg~-~l~sgs~---Dg~i~vWd~~~~~~  285 (332)
                      .......  ...+..+...+++. +.++.+.   =++++.+|+.+++.
T Consensus       363 ~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  363 REIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             eeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            4433221  22233333334443 2222222   23788888877764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.26  E-value=0.0009  Score=63.38  Aligned_cols=104  Identities=13%  Similarity=0.249  Sum_probs=77.9

Q ss_pred             ceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE--
Q 020021          209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV--  286 (332)
Q Consensus       209 v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~--  286 (332)
                      +.--+++..+++++.|+.-|.+++|....++...... . .....+.....|++.+++|.|+..|.|.|+.+.++...  
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-~-~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-E-GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccc-c-CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            3344677889999999999999999977665442221 1 12344455688999999999999999999988764321  


Q ss_pred             ---EEe-cCCCCCCceEEeCCCeeEEEeccce
Q 020021          287 ---ASW-MSFDTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       287 ---~~~-~~~~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                         ..+ +.|+..|++++|++|++.|-+|...
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~  145 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQ  145 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCC
Confidence               111 3578899999999999999998765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.08  E-value=0.14  Score=45.79  Aligned_cols=133  Identities=16%  Similarity=0.131  Sum_probs=78.4

Q ss_pred             CcEEEEeCCCc-----eEEE--EEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEc
Q 020021          143 RTVLLWDQRAE-----KCQG--LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS  215 (332)
Q Consensus       143 g~i~iWd~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s  215 (332)
                      |.|.++++...     +...  ....++.......-++. +.++.++.|.+|++...+  .+....  ........+...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~--~l~~~~--~~~~~~~i~sl~  136 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGR-LVVAVGNKLYVYDLDNSK--TLLKKA--FYDSPFYITSLS  136 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTE-EEEEETTEEEEEEEETTS--SEEEEE--EE-BSSSEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCE-EEEeecCEEEEEEccCcc--cchhhh--eecceEEEEEEe
Confidence            88999998774     2221  11223322222223555 667788999999987654  122111  111223444555


Q ss_pred             CCCCEEEEEcCCCeEEEEEccC-CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021          216 NDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       216 ~dg~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                      .-+.+++++..-..+.++.... +..+..+... .....+.++.|-+|++.++.+..+|.+.++...
T Consensus       137 ~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  137 VFKNYILVGDAMKSVSLLRYDEENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EETTEEEEEESSSSEEEEEEETTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccccEEEEEEcccCEEEEEEEccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            5577899999888888774432 3333333222 224556777887677799999999999999886

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.05  E-value=0.31  Score=46.46  Aligned_cols=229  Identities=19%  Similarity=0.257  Sum_probs=123.2

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc------c-ee-EEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEe
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKY------G-VD-LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~------~-v~-~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~  117 (332)
                      +..+..++.|+.|.-.|..+|+.+-.+.....      . +. .++.. ++..++.++.   ++.+..+|.++|+.+..+
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~---~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF---DGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC---CCeEEEEECCCCCEeeee
Confidence            45677788899999999999988765543221      0 00 01111 2245555543   678999999999987766


Q ss_pred             eccccc-----EEE-EEecCCCCeEEEee---------CCCcEEEEeCCCceEEEEEEecCc------------------
Q 020021          118 KGHHDR-----VVS-LSLCSSKDCFISGS---------LDRTVLLWDQRAEKCQGLLRVQGR------------------  164 (332)
Q Consensus       118 ~~h~~~-----V~~-v~~~~~~~~l~s~s---------~Dg~i~iWd~~~~~~~~~~~~~~~------------------  164 (332)
                      ......     +.+ ..+.  +..++.++         .++.+...|..+++..-.+.....                  
T Consensus       137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  214 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG  214 (488)
T ss_pred             cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence            533221     111 1111  23444443         467888889988887665543210                  


Q ss_pred             -----eeEEEcC-CCeEEEEEeCC------------------EEEEEECccCCCCCeeEEEecCCC-------CCceeEE
Q 020021          165 -----PAAAYDD-QGLVFAVAFGG------------------YIRMFDARKYEKGPFDIFSVGGDI-------SDANVVK  213 (332)
Q Consensus       165 -----~~~~~~~-~~~~~~~~~~~------------------~i~vwd~~~~~~~~~~~~~~~~~~-------~~v~~v~  213 (332)
                           ....+++ .+.++....++                  .+..+|..+.+.  .-.+....+.       .......
T Consensus       215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~--~W~~~~~~~~~~~~~~~s~p~~~~  292 (488)
T cd00216         215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV--KWFYQTTPHDLWDYDGPNQPSLAD  292 (488)
T ss_pred             CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE--EEEeeCCCCCCcccccCCCCeEEe
Confidence                 0112232 34455544333                  566666654321  1111111110       0000000


Q ss_pred             E-cCCCC---EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE-----------------EcCC
Q 020021          214 F-SNDGR---LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS-----------------GSGD  272 (332)
Q Consensus       214 ~-s~dg~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s-----------------gs~D  272 (332)
                      . .-+|.   .++.++.+|.++.+|..+|+.+=......      ..++.+| +..++.                 ...+
T Consensus       293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~  365 (488)
T cd00216         293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGK  365 (488)
T ss_pred             ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec------cccccCC-ceEEEccccccccCcccccCCCCCCCc
Confidence            1 12343   57788899999999999999875543210      1123344 222221                 1246


Q ss_pred             CcEEEEECCCCceEEEe
Q 020021          273 GSVYAWSVRSGKEVASW  289 (332)
Q Consensus       273 g~i~vWd~~~~~~~~~~  289 (332)
                      |.+.-.|+.+++.+-..
T Consensus       366 G~l~AlD~~tG~~~W~~  382 (488)
T cd00216         366 GGLAALDPKTGKVVWEK  382 (488)
T ss_pred             eEEEEEeCCCCcEeeEe
Confidence            78888899888876654

The alignment model contains an 8-bladed beta-propeller.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.99  E-value=0.19  Score=43.12  Aligned_cols=202  Identities=14%  Similarity=0.161  Sum_probs=118.5

Q ss_pred             hcccceeEecc-CCCcEEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeeeEEeeecc-cceeEEEEccCCCEEEEecCC
Q 020021           22 QSMEVGMSFRD-YNGRISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        22 ~~~~~~~~l~~-h~~~I~~i~~s~dg~~l~tgs~D~--tv~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~   97 (332)
                      .+.+.++++.- .+.-..++.|..+|.++-|.|.-|  +|+.+|+.+++.++...-.. .--..++...+  .++--.  
T Consensus        31 ~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLT--  106 (264)
T PF05096_consen   31 YSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLT--  106 (264)
T ss_dssp             EEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEE--
T ss_pred             eeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEE--
Confidence            35666777763 334466899988888888888877  89999999998876554322 22233444433  332222  


Q ss_pred             CCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEE
Q 020021           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  177 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (332)
                      -.++...+||.++-+.+..+. ....=++++  .+++.|+.......+.++|.++-+....+..                
T Consensus       107 Wk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V----------------  167 (264)
T PF05096_consen  107 WKEGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV----------------  167 (264)
T ss_dssp             SSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-----------------
T ss_pred             ecCCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEE----------------
Confidence            126788999999888777765 345667776  4666777666667888888766544333321                


Q ss_pred             EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC-------C
Q 020021          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-------S  250 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~  250 (332)
                               .+-.    .+         ...++.+.+- +|.+.|---....|...|..+|++...+.....       .
T Consensus       168 ---------~~~g----~p---------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~  224 (264)
T PF05096_consen  168 ---------TDNG----RP---------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDK  224 (264)
T ss_dssp             ---------EETT----EE------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTT
T ss_pred             ---------EECC----EE---------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccc
Confidence                     1100    00         0123334443 677777777788899999999998877643211       0


Q ss_pred             -----CCcceEEEECCCC-CEEEEE
Q 020021          251 -----RNSTLEASFSPEG-MFVISG  269 (332)
Q Consensus       251 -----~~~~~~v~~spdg-~~l~sg  269 (332)
                           ....+.+|+.|.. ++++||
T Consensus       225 ~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  225 SRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             cccccCCeeEeEeEeCCCCEEEEEe
Confidence                 2344679998765 455555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.95  E-value=0.065  Score=39.43  Aligned_cols=100  Identities=17%  Similarity=0.261  Sum_probs=59.0

Q ss_pred             EEEEEEC---CCC-CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021           37 ISSMDFH---KSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (332)
Q Consensus        37 I~~i~~s---~dg-~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~  112 (332)
                      |+++++.   -|| +.|+.||.|..||+|+-+  +.+..+.... .|..++-... ..++++-.   +++|-+|+-..  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~-~v~~L~~~~~-~~F~Y~l~---NGTVGvY~~~~--   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD-KVTSLCSLGG-GRFAYALA---NGTVGVYDRSQ--   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc-ceEEEEEcCC-CEEEEEec---CCEEEEEeCcc--
Confidence            5666653   343 679999999999999854  5555554433 4555554444 45666654   56777776522  


Q ss_pred             eEEEeecccccEEEEEecC---CC-CeEEEeeCCCcEE
Q 020021          113 YLRYFKGHHDRVVSLSLCS---SK-DCFISGSLDRTVL  146 (332)
Q Consensus       113 ~~~~~~~h~~~V~~v~~~~---~~-~~l~s~s~Dg~i~  146 (332)
                      .+...+. +..++++++..   || ..|++|=.+|.|-
T Consensus        73 RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2233332 23356665543   22 2688887777654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.90  E-value=0.3  Score=43.79  Aligned_cols=176  Identities=11%  Similarity=0.101  Sum_probs=94.1

Q ss_pred             cEEEEEcCCCeeeEEeeecccc-eeE---EEEccC----CCEEEEecCC--C----CC-ceeEEEEccCC----ceEEEe
Q 020021           57 SIRLYDVTAATCLKTINSKKYG-VDL---VCFTSH----PTTVIYSSKN--G----WD-ESLRLLSLHDN----KYLRYF  117 (332)
Q Consensus        57 tv~iwd~~~~~~~~~~~~~~~~-v~~---~~~~~~----~~~~~~~s~~--g----~d-~~v~v~d~~~~----~~~~~~  117 (332)
                      .|++.|..+.+.+.++...... +.+   +.+..+    ...++.|..-  +    .. +.+.++++...    ..++.+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5788888888877666543322 222   333332    3455555321  1    12 77999998874    223222


Q ss_pred             --ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-EEEEEEec--CceeEEEcCCCeEEEEEeCCEEEEEECccC
Q 020021          118 --KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQ--GRPAAAYDDQGLVFAVAFGGYIRMFDARKY  192 (332)
Q Consensus       118 --~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~  192 (332)
                        ....++|++++-. .++ |+.+. .+.|.+|++...+ ....-...  .........+..++.+....-+.++..+. 
T Consensus        83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~-  158 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE-  158 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET-
T ss_pred             EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc-
Confidence              3456789988755 344 44333 3789999987776 44332222  11111112233444444445555553322 


Q ss_pred             CCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc
Q 020021          193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (332)
Q Consensus       193 ~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~  236 (332)
                      ....+....-......+.++.|-+|++.++++..+|.+.++...
T Consensus       159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            11123333322233456778888676799999999999998865

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.85  E-value=0.28  Score=42.75  Aligned_cols=227  Identities=11%  Similarity=0.144  Sum_probs=117.1

Q ss_pred             CCCCEEEEEeCCCcEEEEEcC-CCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEE------
Q 020021           44 KSSSYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY------  116 (332)
Q Consensus        44 ~dg~~l~tgs~D~tv~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~------  116 (332)
                      ..++.|+.|..|| +.+++.. .....+....  ..|..+...+.-+.++.-+    |+.+.++++..-.....      
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvLs----d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVLS----DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEEc----CCccEEEEchhhccccccccccc
Confidence            4578888898888 9999983 2222222222  2377777777777666654    57899999865433221      


Q ss_pred             --------eecccccEEEEE--ecCCCCeEEEeeCCCcEEEEeCCCc-----eEEEEEEecCcee-EEEcCCCeEEEEEe
Q 020021          117 --------FKGHHDRVVSLS--LCSSKDCFISGSLDRTVLLWDQRAE-----KCQGLLRVQGRPA-AAYDDQGLVFAVAF  180 (332)
Q Consensus       117 --------~~~h~~~V~~v~--~~~~~~~l~s~s~Dg~i~iWd~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~  180 (332)
                              -......+...+  -...+...+.....++|.+|.+...     +....+.++..+. ..+.  +..+.++.
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence                    011222333333  1123334444445568888887553     2334455554332 2222  34445555


Q ss_pred             CCEEEEEECccCCCCCeeEEEecC----------CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC
Q 020021          181 GGYIRMFDARKYEKGPFDIFSVGG----------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~~~~~~----------~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (332)
                      .+...+.|+.+.....+  .....          ...++..+..+ ++.++++..  ..-...| ..|+..+....  .-
T Consensus       156 ~~~f~~idl~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~~--~~g~fv~-~~G~~~r~~~i--~W  227 (275)
T PF00780_consen  156 SKGFYLIDLNTGSPSEL--LDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCYD--NIGVFVN-KNGEPSRKSTI--QW  227 (275)
T ss_pred             CCceEEEecCCCCceEE--eCccCCcchhhhcccCCCceEEEEeC-CceEEEEec--ceEEEEc-CCCCcCcccEE--Ec
Confidence            66677777764332211  11111          01123333333 456555432  2222333 34543331111  01


Q ss_pred             CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec
Q 020021          251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM  290 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~  290 (332)
                      ......+++  ...||+..+.+ .|.||++.+++.+..+.
T Consensus       228 ~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  228 SSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIP  264 (275)
T ss_pred             CCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence            123334555  33588877764 49999999999887764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.83  E-value=0.0079  Score=57.21  Aligned_cols=116  Identities=16%  Similarity=0.158  Sum_probs=77.9

Q ss_pred             ceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee---ecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc-
Q 020021          209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN---VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-  284 (332)
Q Consensus       209 v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~-  284 (332)
                      +..+.+|++..++|+|+..|.|.++-+..+.......   ....|...|++++|++|+..+++|..-|.|.+-.+.... 
T Consensus        79 ~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~  158 (726)
T KOG3621|consen   79 TCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQA  158 (726)
T ss_pred             EEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhh
Confidence            4456788999999999999999999876633221111   112246788999999999999999999999998887621 


Q ss_pred             ---eEEEecCCCCCCceEEeCCCeeEEEeccceEEEeccccccc
Q 020021          285 ---EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL  325 (332)
Q Consensus       285 ---~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~~  325 (332)
                         ....++...++|-.|.. -++.+|++...-..++..+.++.
T Consensus       159 ~~~~~q~il~~ds~IVQlD~-~q~~LLVStl~r~~Lc~tE~eti  201 (726)
T KOG3621|consen  159 FLSKSQEILSEDSEIVQLDY-LQSYLLVSTLTRCILCQTEAETI  201 (726)
T ss_pred             hccccceeeccCcceEEeec-ccceehHhhhhhhheeecchhHH
Confidence               12334455566655553 34566666655555555444433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.01  Score=55.78  Aligned_cols=92  Identities=18%  Similarity=0.321  Sum_probs=69.8

Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcce-EEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 020021          208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISGSGDGSVYAWSVRSGKEV  286 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~  286 (332)
                      .+..+.++|.-.++|.++.+|.+-+..+. .+.+-++   +.+...++ +++|.|||+.||.|=.||+|++-|+.++..+
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti---p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI---PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEec---cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            45668899999999999999988877654 3433333   23444444 8999999999999999999999999999887


Q ss_pred             EEe-cCCCCCCceEEeCC
Q 020021          287 ASW-MSFDTEPPVIKWTP  303 (332)
Q Consensus       287 ~~~-~~~~~~v~~l~~sp  303 (332)
                      ... ......|.++-|+|
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            763 23345677777764

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.73  E-value=0.32  Score=41.76  Aligned_cols=198  Identities=12%  Similarity=0.148  Sum_probs=101.2

Q ss_pred             EeecccccEEEEEecCCCCeEEEe-eCCCcEEEEeCCCceEEEEEEecC---ceeEEEcCCCeEEEEEe-CCEEEEEECc
Q 020021          116 YFKGHHDRVVSLSLCSSKDCFISG-SLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAF-GGYIRMFDAR  190 (332)
Q Consensus       116 ~~~~h~~~V~~v~~~~~~~~l~s~-s~Dg~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~i~vwd~~  190 (332)
                      .+.+-.+.+.++.|.|+.+.|++. ...+.|...+. .++.+..+...+   .....+-.++.++.... ++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            455666779999999987755555 55667766675 466666665543   23445555555554442 6788888773


Q ss_pred             cCC----CCCeeEEEecC---CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC---CeEeEEeee-----cCCCCCcce
Q 020021          191 KYE----KGPFDIFSVGG---DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTLLSTYNV-----KPVSRNSTL  255 (332)
Q Consensus       191 ~~~----~~~~~~~~~~~---~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~---~~~~~~~~~-----~~~~~~~~~  255 (332)
                      ...    ......+.+..   .......++++|.+..++++-......++....   +..+.....     .........
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321    11122233222   123578899999877776776666656655442   211111110     111223345


Q ss_pred             EEEECCC-CCEEEEEcCCCcEEEEECCCCceEEEecCCC---------CCCceEEeCCCeeEEEeccceE
Q 020021          256 EASFSPE-GMFVISGSGDGSVYAWSVRSGKEVASWMSFD---------TEPPVIKWTPGSLMFVTGSSEL  315 (332)
Q Consensus       256 ~v~~spd-g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~---------~~v~~l~~sp~~~~l~t~~~d~  315 (332)
                      .+++.|. |.+++-......|-+.| .+|+.+..+.-..         ...-.|+|.|+|++.++.-..+
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNl  243 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNL  243 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCce
Confidence            7888886 45666667778899999 5677655442111         2345699999999888876553

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.67  E-value=0.42  Score=42.44  Aligned_cols=105  Identities=17%  Similarity=0.203  Sum_probs=65.1

Q ss_pred             CceeEEEcCCCCEEEEE-cCCCeEEEEEccC--CeEeEE--eeecCCCCCcceEEEECCCCCEEEEEcCCC-cEEEEECC
Q 020021          208 DANVVKFSNDGRLMLLT-TMEGHIHVLDSFR--GTLLST--YNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVR  281 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~-~~dg~i~i~d~~~--~~~~~~--~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg-~i~vWd~~  281 (332)
                      -.+.++||||++.+..+ +..+.|+.++...  +..-..  +..........-..+...+|++.+++-.+| .|.+|+..
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            34789999999655554 5668899988752  211110  111111122222456677888887665555 89999987


Q ss_pred             CCceEEEecCCCCCCceEEeC-CCe-eEEEeccc
Q 020021          282 SGKEVASWMSFDTEPPVIKWT-PGS-LMFVTGSS  313 (332)
Q Consensus       282 ~~~~~~~~~~~~~~v~~l~~s-p~~-~~l~t~~~  313 (332)
                       ++.+......-..+++++|- |+. .+++|+..
T Consensus       244 -G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         244 -GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             -CcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence             88887765554678889984 443 45566543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.66  E-value=0.081  Score=52.53  Aligned_cols=97  Identities=14%  Similarity=0.167  Sum_probs=62.4

Q ss_pred             EEEEcCCCeEEEEEccCCe--EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE-EEecCCCCCCc
Q 020021          221 MLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV-ASWMSFDTEPP  297 (332)
Q Consensus       221 l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~-~~~~~~~~~v~  297 (332)
                      ...|-.+..+..||++...  ++..-.......+...+++-+.+| +||.||.+|.||++|- .++.- ..+.+...+|.
T Consensus       545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPII  622 (794)
T ss_pred             eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCee
Confidence            4566677788999987632  221111011122333445555555 7888999999999995 34433 33567788999


Q ss_pred             eEEeCCCeeEEEeccce-EEEec
Q 020021          298 VIKWTPGSLMFVTGSSE-LSFWI  319 (332)
Q Consensus       298 ~l~~sp~~~~l~t~~~d-~~~w~  319 (332)
                      .|.-+.||+++++.+.. +.+.+
T Consensus       623 ~iDvt~DGkwilaTc~tyLlLi~  645 (794)
T PF08553_consen  623 GIDVTADGKWILATCKTYLLLID  645 (794)
T ss_pred             EEEecCCCcEEEEeecceEEEEE
Confidence            99999999988776665 44443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.0087  Score=59.61  Aligned_cols=106  Identities=18%  Similarity=0.284  Sum_probs=74.6

Q ss_pred             EEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC
Q 020021          213 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF  292 (332)
Q Consensus       213 ~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~  292 (332)
                      +...-+..++.++..|++-.+|....  +..+........++.+++|+.||+.++.|=.+|-|.+||+..++.++.+.-|
T Consensus        94 s~a~~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   94 SSAIVVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeeeeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            33334566888999999999887642  1111111123467889999999999999999999999999999988888777


Q ss_pred             CCCCceEE---eCCCeeEEEeccceEEEecc
Q 020021          293 DTEPPVIK---WTPGSLMFVTGSSELSFWIP  320 (332)
Q Consensus       293 ~~~v~~l~---~sp~~~~l~t~~~d~~~w~~  320 (332)
                      .++.+.+-   +..++..+.++.....+|..
T Consensus       172 ~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~l  202 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNSKLLTSDTGGSFWKL  202 (1206)
T ss_pred             CCccceEEEEEEeCCCcEEEEccCCCceEEE
Confidence            77665543   33344456666555557754

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.53  Score=43.34  Aligned_cols=245  Identities=14%  Similarity=0.170  Sum_probs=139.6

Q ss_pred             EEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC-eE
Q 020021           58 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CF  136 (332)
Q Consensus        58 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l  136 (332)
                      +.+++..+......+..+. ....+...+.+..+......  ...+...+............-...-.++++++.++ ..
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~--~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vy   89 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSG--SNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVY   89 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeec--CceeeecccccceeeeeccCCCccccceeeCCCCCeEE
Confidence            6666666555554444333 34456777788776665432  22444444332111111111112234677778776 55


Q ss_pred             EEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEE-e---CCEEEEEECccCCCCCeeEEEecCCCCCcee
Q 020021          137 ISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVA-F---GGYIRMFDARKYEKGPFDIFSVGGDISDANV  211 (332)
Q Consensus       137 ~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~---~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~  211 (332)
                      ++...+..|.+-|..+.+.......... ....+++++..+.++ .   ++.+.+.|......  ......+.  .+ ..
T Consensus        90 v~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~--~~~~~vG~--~P-~~  164 (381)
T COG3391          90 VTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV--TATIPVGN--TP-TG  164 (381)
T ss_pred             EecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--EEEEecCC--Cc-ce
Confidence            6666678999999887777665544322 245556555333322 2   46777777654321  11122211  12 67


Q ss_pred             EEEcCCCCEE-EEEcCCCeEEEEEccCCeEeEEeee--cCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECCCCce
Q 020021          212 VKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNV--KPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKE  285 (332)
Q Consensus       212 v~~s~dg~~l-~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~~~~~  285 (332)
                      ++++|+|..+ ++...++.|.++|........ ...  ..........++++|||.++...-..   +.+.+.|..++..
T Consensus       165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v  243 (381)
T COG3391         165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV  243 (381)
T ss_pred             EEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence            8999999854 455688999999976655442 110  00111233468999999976666433   5899999988776


Q ss_pred             EEEecCCCC-CCceEEeCCCeeEEEec
Q 020021          286 VASWMSFDT-EPPVIKWTPGSLMFVTG  311 (332)
Q Consensus       286 ~~~~~~~~~-~v~~l~~sp~~~~l~t~  311 (332)
                      ...-..... ....+..+|+|+.+-..
T Consensus       244 ~~~~~~~~~~~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         244 TATDLPVGSGAPRGVAVDPAGKAAYVA  270 (381)
T ss_pred             EEeccccccCCCCceeECCCCCEEEEE
Confidence            554222222 45678889998766544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.63  E-value=0.36  Score=41.07  Aligned_cols=70  Identities=9%  Similarity=-0.032  Sum_probs=50.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEee
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK  118 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~  118 (332)
                      |++++-|.+.+.+.+-++++|++...+.....--......+++..+..++.   |++....|..+..++...+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgsh---d~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSH---DGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecC---CCcEEEecccccceEEecc
Confidence            677889999999999999999887766544321122345566666776654   8889999998887776654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.57  E-value=0.00076  Score=63.23  Aligned_cols=191  Identities=15%  Similarity=0.232  Sum_probs=109.0

Q ss_pred             cEEEEEecCCCC--eEEEeeCCCcEEEEeCCCceEEE-EE-EecCcee--EEEcC-CCeEEEEEe-----CCEEEEEECc
Q 020021          123 RVVSLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQG-LL-RVQGRPA--AAYDD-QGLVFAVAF-----GGYIRMFDAR  190 (332)
Q Consensus       123 ~V~~v~~~~~~~--~l~s~s~Dg~i~iWd~~~~~~~~-~~-~~~~~~~--~~~~~-~~~~~~~~~-----~~~i~vwd~~  190 (332)
                      .+.+++...+.+  .++.|..+|.|-+-..+...-.. .+ .....++  .++.+ +...++++.     +..+.+||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            456666555443  56778888998887765443221 11 1111111  12222 334555554     3579999987


Q ss_pred             cCCCCCeeEEEecC-CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe-EeEEeeecCCCCCcceEEEECC-CCCEEE
Q 020021          191 KYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSP-EGMFVI  267 (332)
Q Consensus       191 ~~~~~~~~~~~~~~-~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~sp-dg~~l~  267 (332)
                      .....|+......+ .....+++++-.+.+++++|...+.++++|++... ....+     .+..+..+..+| .+.|++
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-----nTk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-----NTKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-----hhhhcccceecCCCCCcee
Confidence            65433433322222 23456678888888999999999999999987322 11111     122333466777 677887


Q ss_pred             EEcCCCcEEEEEC-CCCc-eEEEec----CCCCCCceEEeCCCee-EEEeccce---EEEec
Q 020021          268 SGSGDGSVYAWSV-RSGK-EVASWM----SFDTEPPVIKWTPGSL-MFVTGSSE---LSFWI  319 (332)
Q Consensus       268 sgs~Dg~i~vWd~-~~~~-~~~~~~----~~~~~v~~l~~sp~~~-~l~t~~~d---~~~w~  319 (332)
                      +-+ ||.|-+||. .+-+ .+..+.    .-...+..++|.|... ++++-..|   +++.+
T Consensus       213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd  273 (783)
T KOG1008|consen  213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD  273 (783)
T ss_pred             ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence            765 999999993 3322 111111    1223478899999653 44444433   44444

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.57  E-value=0.00071  Score=63.42  Aligned_cols=200  Identities=15%  Similarity=0.154  Sum_probs=117.5

Q ss_pred             cEEEEEEC--CCCCEEEEEeCCCcEEEEEcCCCee--eEEeeecccceeEEEEccCCCEEEEecCC--CCCceeEEEEcc
Q 020021           36 RISSMDFH--KSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKN--GWDESLRLLSLH  109 (332)
Q Consensus        36 ~I~~i~~s--~dg~~l~tgs~D~tv~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~--g~d~~v~v~d~~  109 (332)
                      .+.|++..  .+..+++.|..+|.|-+=.+....-  -.....+....+.++|.+-...+++++.+  -.|..+.+||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            35566554  3345788899999988876643211  12233444556777887764444433221  125679999998


Q ss_pred             CC--ceEE--Eeec-ccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceE-EEEEEecCceeEEEcC-CCeEEEEEeCC
Q 020021          110 DN--KYLR--YFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGRPAAAYDD-QGLVFAVAFGG  182 (332)
Q Consensus       110 ~~--~~~~--~~~~-h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~  182 (332)
                      ++  .+..  .|.+ -.....+++|-.+.+.|.+|..-+.+++.|++.... ...+....+.....+| .+.+++...++
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg  217 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDG  217 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccC
Confidence            76  2211  1222 334455788888889999999999999999874321 1122222223344455 56777777899


Q ss_pred             EEEEEE-CccCCCCCeeEEEecC--CCCCceeEEEcCCC--CEEEEEcCCCeEEEEEcc
Q 020021          183 YIRMFD-ARKYEKGPFDIFSVGG--DISDANVVKFSNDG--RLMLLTTMEGHIHVLDSF  236 (332)
Q Consensus       183 ~i~vwd-~~~~~~~~~~~~~~~~--~~~~v~~v~~s~dg--~~l~~~~~dg~i~i~d~~  236 (332)
                      .|.+|| .++.+. ++.......  ....+..+++.|..  ...+..-..++|+.+|+.
T Consensus       218 ~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  218 DIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            999999 443322 111111000  01136678888854  333444566899999974

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.48  E-value=0.012  Score=36.20  Aligned_cols=30  Identities=17%  Similarity=0.436  Sum_probs=27.9

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDV   63 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~   63 (332)
                      ...|.+++|+|..++||.|..||.|.+|.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            356999999999999999999999999998

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.46  E-value=0.021  Score=51.98  Aligned_cols=94  Identities=20%  Similarity=0.370  Sum_probs=61.2

Q ss_pred             cCCCCEEEEEc---------CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          215 SNDGRLMLLTT---------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       215 s~dg~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                      |||+++++...         ..+.+.++|+.+++.......    ........|||||+++|-.. ++.|++++..+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~----~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP----PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E----ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC----ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            67777776633         235789999998765543221    24455789999999999884 78999999877643


Q ss_pred             EEEecCCC------------------CCCceEEeCCCeeEEEeccce
Q 020021          286 VASWMSFD------------------TEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       286 ~~~~~~~~------------------~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      . .++...                  ..-..+-||||+++|+...-|
T Consensus        76 ~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   76 T-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             E-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             E-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            3 222111                  123568899999999887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.42  E-value=0.8  Score=42.59  Aligned_cols=191  Identities=15%  Similarity=0.194  Sum_probs=99.8

Q ss_pred             EEECCCCCEEEEEeCC-----------CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           40 MDFHKSSSYLVTASDD-----------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        40 i~~s~dg~~l~tgs~D-----------~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      ++.+|.|..+|..-.+           ..|+||+.. |+.+.++......+..+.|+.+...++...    |+.++++|+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~----dG~v~vy~~  108 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQS----DGTVRVYDL  108 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEc----CCEEEEEeC
Confidence            3446666666655444           158999865 667777766556788889988665555543    789999998


Q ss_pred             cCCceEEEe-------ecccccEEEEEecCCCCeEEEeeCCCcEEEEe-CCCceEEEEE-EecCc---------e--eEE
Q 020021          109 HDNKYLRYF-------KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD-QRAEKCQGLL-RVQGR---------P--AAA  168 (332)
Q Consensus       109 ~~~~~~~~~-------~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd-~~~~~~~~~~-~~~~~---------~--~~~  168 (332)
                      .... ...+       .-....+....+..+|-.+.|.  ++.+.+-+ .........+ ..+..         .  ...
T Consensus       109 ~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~  185 (410)
T PF04841_consen  109 FGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL  185 (410)
T ss_pred             CCce-eechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence            6332 1111       1111222222333344334443  23333221 2111000000 00000         0  001


Q ss_pred             EcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021          169 YDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       169 ~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                      +.. ....+....++.+.+.+....+.       +. ...++..+++||+|+++|.-..+|.+.+....-.+.+.++..
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~-------i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ-------ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc-------cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence            111 12233334445555444322100       10 124688899999999999999999999988766666555543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.42  E-value=0.8  Score=42.56  Aligned_cols=220  Identities=14%  Similarity=0.119  Sum_probs=105.6

Q ss_pred             eEEEEccCCCEEEEec-CCCCC-ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC-----------cEE
Q 020021           80 DLVCFTSHPTTVIYSS-KNGWD-ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-----------TVL  146 (332)
Q Consensus        80 ~~~~~~~~~~~~~~~s-~~g~d-~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg-----------~i~  146 (332)
                      ...+++|+++.++++. .+|.| ..+++.|+++++.+...-.... -..+.|.++++.|+....|.           .|.
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            3578899999988763 33432 4699999999976543211111 12389999988877666544           277


Q ss_pred             EEeCCCceEE--EEEEecC----ceeEEEcCCCeEEEEE-e---C-CEEEEEECccC--CCCCeeEEEecCCCCCceeEE
Q 020021          147 LWDQRAEKCQ--GLLRVQG----RPAAAYDDQGLVFAVA-F---G-GYIRMFDARKY--EKGPFDIFSVGGDISDANVVK  213 (332)
Q Consensus       147 iWd~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~-~---~-~~i~vwd~~~~--~~~~~~~~~~~~~~~~v~~v~  213 (332)
                      +|.+.+....  ..+....    ...+..+.++.++.+. .   + ..+.+.|+...  .......+..  ....+....
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~--~~~~~~~~v  283 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP--REDGVEYYV  283 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE--SSSS-EEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC--CCCceEEEE
Confidence            7777654322  2333322    1233445555544433 2   2 45777777653  1112222221  122232222


Q ss_pred             EcCCCCEEEEEcC---CCeEEEEEccCCeE---eEEeeecCCCCCcceEEEECCCC-CEEEEEcCCC--cEEEEECCCCc
Q 020021          214 FSNDGRLMLLTTM---EGHIHVLDSFRGTL---LSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDG--SVYAWSVRSGK  284 (332)
Q Consensus       214 ~s~dg~~l~~~~~---dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~v~~spdg-~~l~sgs~Dg--~i~vWd~~~~~  284 (332)
                      ....+.+++....   ++.|...++.....   ...+-   .+...+.-..+...+ ..++.--.++  .|+++++..+.
T Consensus       284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~  360 (414)
T PF02897_consen  284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK  360 (414)
T ss_dssp             EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred             EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence            2334455544432   35676677766542   11111   112212222333444 4444445555  78899998233


Q ss_pred             eEEEe-cCCCCCCceEEeCCCe
Q 020021          285 EVASW-MSFDTEPPVIKWTPGS  305 (332)
Q Consensus       285 ~~~~~-~~~~~~v~~l~~sp~~  305 (332)
                      ..... ..-.+.+..+...+++
T Consensus       361 ~~~~~~~p~~g~v~~~~~~~~~  382 (414)
T PF02897_consen  361 ESREIPLPEAGSVSGVSGDFDS  382 (414)
T ss_dssp             EEEEEESSSSSEEEEEES-TT-
T ss_pred             EEeeecCCcceEEeccCCCCCC
Confidence            33332 2222334455545544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.39  E-value=0.27  Score=47.63  Aligned_cols=114  Identities=11%  Similarity=0.151  Sum_probs=80.3

Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE--CCCCCEEEEEcCCCcEEEEECC----
Q 020021          208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF--SPEGMFVISGSGDGSVYAWSVR----  281 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~--spdg~~l~sgs~Dg~i~vWd~~----  281 (332)
                      ...-+..|.-++..++.....++.|||...+.+..+-..  .....|..+.|  .|||+.+++.|-...|.++.-.    
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            344556666777777777777999999998876544332  23456667765  5899999999999999998431    


Q ss_pred             -CC----ceEEE--ecCCC-CCCceEEeCCCeeEEEeccceEEEeccccc
Q 020021          282 -SG----KEVAS--WMSFD-TEPPVIKWTPGSLMFVTGSSELSFWIPDLS  323 (332)
Q Consensus       282 -~~----~~~~~--~~~~~-~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~  323 (332)
                       +.    ..+..  +..|+ .+|.+..|.++|.+++..+....+.+....
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~~  158 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWLD  158 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCcC
Confidence             11    12222  23343 468999999999999999998888775443

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.27  Score=45.85  Aligned_cols=130  Identities=18%  Similarity=0.253  Sum_probs=82.9

Q ss_pred             CceeEEEEccCCceEEEeecccccEEEEEecCCCC--eEE-----EeeCCCcEEEEeCCCceEE--EEEEecC------c
Q 020021          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD--CFI-----SGSLDRTVLLWDQRAEKCQ--GLLRVQG------R  164 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~--~l~-----s~s~Dg~i~iWd~~~~~~~--~~~~~~~------~  164 (332)
                      ...+.-.|++.|+.+...+-|.+ |+-+.+.|+.+  .+.     -|=.|..|.-||++-+...  ...+.+.      .
T Consensus       355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF  433 (644)
T KOG2395|consen  355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF  433 (644)
T ss_pred             cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence            35577789999999998888877 78888888765  332     3445788899998754331  1111111      1


Q ss_pred             eeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEc
Q 020021          165 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS  235 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~  235 (332)
                      .+..-..+|.++.++.+|.||+||-. ....+..+.   +--.+|.-|..+.||+.+++.+. ..+.+.|.
T Consensus       434 sc~aTT~sG~IvvgS~~GdIRLYdri-~~~AKTAlP---gLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  434 SCFATTESGYIVVGSLKGDIRLYDRI-GRRAKTALP---GLGDAIKHVDVTADGKWILATCK-TYLLLIDT  499 (644)
T ss_pred             ceeeecCCceEEEeecCCcEEeehhh-hhhhhhccc---ccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence            23344467788888889999999952 222221111   22246778899999998776554 45555554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.28  E-value=0.0073  Score=58.69  Aligned_cols=106  Identities=12%  Similarity=0.223  Sum_probs=79.9

Q ss_pred             EEEcCCCCEEEEEc----CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 020021          212 VKFSNDGRLMLLTT----MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA  287 (332)
Q Consensus       212 v~~s~dg~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~  287 (332)
                      ..++|...++++++    ..|.|.||- .+|++...... |.   .+.+++|+|..-.||.|-+-|.+.+|...+.+.-.
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ce---ehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            45667777666654    346788874 67776543332 22   23468999999999999999999999988776655


Q ss_pred             EecCCCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          288 SWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       288 ~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                      ....|+.++..+.|||+|..++|+..-  +.+|..+.
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            567899999999999999999998753  88887763

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.14  E-value=0.017  Score=47.90  Aligned_cols=103  Identities=17%  Similarity=0.222  Sum_probs=65.6

Q ss_pred             CCEEEEEeCCCcEEEEEcCCC-eeeEEeeecccceeEEEEccCCCE--EEEecCCCCCceeEEEEccCCceEEEeeccc-
Q 020021           46 SSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-  121 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~-  121 (332)
                      +.-++.|+.|+.|.+|....- .....+.....  ...+..|.++.  +.+.  ..+|+.||.|+++-++.+....+|+ 
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e--~i~~~Ip~~~~~~~~c~--~~~dg~ir~~n~~p~k~~g~~g~h~~  145 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE--SIDLGIPNGRDSSLGCV--GAQDGRIRACNIKPNKVLGYVGQHNF  145 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccc--cceeccccccccceeEE--eccCCceeeeccccCceeeeeccccC
Confidence            456788999999999987621 11111111111  12233444443  3333  3568999999999988887777787 


Q ss_pred             ccEEEEEecCCCCeEEEe--eCCCcEEEEeCCC
Q 020021          122 DRVVSLSLCSSKDCFISG--SLDRTVLLWDQRA  152 (332)
Q Consensus       122 ~~V~~v~~~~~~~~l~s~--s~Dg~i~iWd~~~  152 (332)
                      .++........++.++.+  |.|..++.|++..
T Consensus       146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            566666666666777777  7777777777653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.03  E-value=0.021  Score=35.11  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=29.9

Q ss_pred             CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 020021          251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV  286 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~  286 (332)
                      ...+..++|+|....||.|+.||.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            345678899999999999999999999998 66554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.99  E-value=0.42  Score=35.24  Aligned_cols=64  Identities=14%  Similarity=0.185  Sum_probs=39.8

Q ss_pred             EEEEEecC-CC---CeEEEeeCCCcEEEEeCCCceEEEEEEecCcee-EEEcCCCeEEEEEeCCEEEEEEC
Q 020021          124 VVSLSLCS-SK---DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQGLVFAVAFGGYIRMFDA  189 (332)
Q Consensus       124 V~~v~~~~-~~---~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~vwd~  189 (332)
                      |++++++. ++   +.|+.||.|..||+|+-  ...+..+....... ......+.+..+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            56666654 32   58999999999999963  34444554444333 23334455555556788877764

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.98  E-value=1.7  Score=42.36  Aligned_cols=178  Identities=16%  Similarity=0.200  Sum_probs=89.3

Q ss_pred             ccEEEEEecCCCCeEEEee------CCCcEEEE--eCCCceEEEEEEecCceeEEEcCCCe-EEEEEeC-----------
Q 020021          122 DRVVSLSLCSSKDCFISGS------LDRTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQGL-VFAVAFG-----------  181 (332)
Q Consensus       122 ~~V~~v~~~~~~~~l~s~s------~Dg~i~iW--d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------  181 (332)
                      ..+...+++|+|+.++..-      .|..-.+|  +.... ............-.+++++. +.++...           
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            4678889999999876665      34444445  43222 22222222222345556533 3333221           


Q ss_pred             -CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE---EEccCCeE-e-EEeeecCCCCCcce
Q 020021          182 -GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV---LDSFRGTL-L-STYNVKPVSRNSTL  255 (332)
Q Consensus       182 -~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i---~d~~~~~~-~-~~~~~~~~~~~~~~  255 (332)
                       +.+.+.++......   .    .....+..+.+||||..++... +|+|++   -....|+. + ............+.
T Consensus       429 ~gql~~~~vd~ge~~---~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~  500 (591)
T PRK13616        429 TGQLARTPVDASAVA---S----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV  500 (591)
T ss_pred             CceEEEEeccCchhh---h----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence             22222233211100   0    0123588999999999887765 578877   44444541 1 11112122223346


Q ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCC-CceEEEecC--CCCCCceEEeCCCeeEEEe
Q 020021          256 EASFSPEGMFVISGSGDGSVYAWSVRS-GKEVASWMS--FDTEPPVIKWTPGSLMFVT  310 (332)
Q Consensus       256 ~v~~spdg~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~--~~~~v~~l~~sp~~~~l~t  310 (332)
                      .++|.+++..+ .+..++.-.+|.+.- |.....+..  ...++..|+=+|+ .++++
T Consensus       501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~  556 (591)
T PRK13616        501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVT  556 (591)
T ss_pred             cceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEE
Confidence            78999999855 555555555665532 222222122  2455667776764 34444

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.88  E-value=0.035  Score=55.51  Aligned_cols=72  Identities=21%  Similarity=0.382  Sum_probs=59.8

Q ss_pred             CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      .+|.+++|+.||+.++.|-.+|.|.+||+..+..++.+..+..+...+.-+.+..++..++++..-|.  +|.+
T Consensus       131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            57899999999999999999999999999998888877655555556666778888888999988886  5654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.78  E-value=0.061  Score=50.83  Aligned_cols=75  Identities=16%  Similarity=0.250  Sum_probs=63.1

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeeccccee-EEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD-LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      .|.-+.|+|.-.++|++-.+|.+.+..++ ...+.++..+.-.+. ++||.|+|+.++.+-.   |++|++.|++.+..+
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k---dG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK---DGTIRLHDVEKGGRL   97 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec---CCeEEEEEccCCCce
Confidence            36678899999999999999999999888 667777775655555 8999999999998876   789999999887544

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.65  E-value=0.13  Score=49.94  Aligned_cols=95  Identities=12%  Similarity=0.010  Sum_probs=56.2

Q ss_pred             CceeEEEcCCCCEEEEEc------CCC--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-------
Q 020021          208 DANVVKFSNDGRLMLLTT------MEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-------  272 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-------  272 (332)
                      .+...++||||+.++...      .|+  .+.+++.. +.. ..+..    ......-.|+|||+.|++.+..       
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~----g~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE----GHSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec----CCCCCCceECCCCCceEEEecCcceEEEe
Confidence            567789999999887655      233  56666642 222 22211    1123455899999988887532       


Q ss_pred             -----CcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEec
Q 020021          273 -----GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG  311 (332)
Q Consensus       273 -----g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~  311 (332)
                           +.+++.++..++...   .....|..+.|||||..++..
T Consensus       425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i  465 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMI  465 (591)
T ss_pred             ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEE
Confidence                 223322333322211   335679999999999866553

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.59  E-value=1.6  Score=39.01  Aligned_cols=266  Identities=12%  Similarity=0.083  Sum_probs=144.5

Q ss_pred             CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC---C----CCceeEEEEccCCceEEEee---cccc---
Q 020021           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---G----WDESLRLLSLHDNKYLRYFK---GHHD---  122 (332)
Q Consensus        56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~---g----~d~~v~v~d~~~~~~~~~~~---~h~~---  122 (332)
                      +++.++|.++++.+-.+...-.+  .+.++|+++.++.+..-   +    ....|.+||.++-.....+.   .|..   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~--~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLG--NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSE--EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecccCC--ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            37899999999988777654322  35678999888765320   1    13458899998876554332   1111   


Q ss_pred             -cEEEEEecCCCCeEEE--eeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeE
Q 020021          123 -RVVSLSLCSSKDCFIS--GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI  199 (332)
Q Consensus       123 -~V~~v~~~~~~~~l~s--~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~  199 (332)
                       ......++.|++++.-  .+---+|.+-|+..++...++..++-.......+..+.+.+.||.+....+...-+.....
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence             1123456677775443  3445567777888887777776665433333334456667777776666554221111000


Q ss_pred             EEec-CCCC-CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeE--eEEeeecCCC---CCc----ceEEEECCCCCEEEE
Q 020021          200 FSVG-GDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKPVS---RNS----TLEASFSPEGMFVIS  268 (332)
Q Consensus       200 ~~~~-~~~~-~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~---~~~----~~~v~~spdg~~l~s  268 (332)
                      -..- .... -...-+++..+..++.-+-+|.|+-.|+.....  ...+......   .++    ---+++++..+.|+.
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence            0000 0001 112223455555667788999999988765432  2222211000   010    012678765544443


Q ss_pred             E---cCCC-------cEEEEECCCCceEEEecCCCCCCceEEeCCCee-EEEe--c-cceEEEecccccc
Q 020021          269 G---SGDG-------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVT--G-SSELSFWIPDLSK  324 (332)
Q Consensus       269 g---s~Dg-------~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~t--~-~~d~~~w~~~~~~  324 (332)
                      -   +.+|       .|-++|+.+++.+..+.. ..++.+|+.+.|.+ +|.+  . ..++.++++...+
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            2   2222       677889999999887653 23577899988875 4432  2 3468889875543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PHA02713 hypothetical protein; Provisional

Probab=95.52  E-value=2.6  Score=40.95  Aligned_cols=70  Identities=4%  Similarity=-0.032  Sum_probs=41.6

Q ss_pred             cCCCCEEEEEcCCC------eEEEEEccC-CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC--cEEEEECCCCce
Q 020021          215 SNDGRLMLLTTMEG------HIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--SVYAWSVRSGKE  285 (332)
Q Consensus       215 s~dg~~l~~~~~dg------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg--~i~vWd~~~~~~  285 (332)
                      .-+|++++.|+.++      .+..||..+ .+-...-.. +........+++  +|+..+.|+.||  ++..+|..+.+.
T Consensus       461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence            44678888887542      467788876 332211111 111122222333  889999999998  788888877665


Q ss_pred             EE
Q 020021          286 VA  287 (332)
Q Consensus       286 ~~  287 (332)
                      ..
T Consensus       538 ~~  539 (557)
T PHA02713        538 NH  539 (557)
T ss_pred             cc
Confidence            43

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.48  E-value=0.46  Score=44.38  Aligned_cols=104  Identities=14%  Similarity=0.170  Sum_probs=64.1

Q ss_pred             ceeEEEcCCCCE-------EEEEcCCCeEEEEEccCCeE--eEEeeecCCCC-CcceEEEECCCCCEEEEEcCCCcEEEE
Q 020021          209 ANVVKFSNDGRL-------MLLTTMEGHIHVLDSFRGTL--LSTYNVKPVSR-NSTLEASFSPEGMFVISGSGDGSVYAW  278 (332)
Q Consensus       209 v~~v~~s~dg~~-------l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~-~~~~~v~~spdg~~l~sgs~Dg~i~vW  278 (332)
                      ++-+.+.||++.       -+.|-.+..|.-||++-...  +..-..+...+ +...+.+=. ...+++.||.+|-||++
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLY  456 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLY  456 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEee
Confidence            555666666532       24566777888899863221  11111110111 111222333 34588899999999999


Q ss_pred             ECCCCce-EEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021          279 SVRSGKE-VASWMSFDTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       279 d~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      |- .+.. -..+++...+|..|.-+.||+.++..+..
T Consensus       457 dr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  457 DR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             hh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence            97 4444 34567888999999999999977666554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.41  E-value=1.6  Score=37.68  Aligned_cols=182  Identities=16%  Similarity=0.154  Sum_probs=112.4

Q ss_pred             cEEEEEecCCCCeEEEeeCCC--cEEEEeCCCceEEEEEEecCce---eEEEcCCCeEEEEEe-CCEEEEEECccCCCCC
Q 020021          123 RVVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVAF-GGYIRMFDARKYEKGP  196 (332)
Q Consensus       123 ~V~~v~~~~~~~~l~s~s~Dg--~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~i~vwd~~~~~~~~  196 (332)
                      ..-++.|..++..+-|.|.-|  .|+.+|+.+++......++...   .... -+..++.... ++..-+||...++.  
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~-~~d~l~qLTWk~~~~f~yd~~tl~~--  122 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI-LGDKLYQLTWKEGTGFVYDPNTLKK--  122 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE-ETTEEEEEESSSSEEEEEETTTTEE--
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE-ECCEEEEEEecCCeEEEEccccceE--
Confidence            455788877888888888776  7999999999877666665432   1111 1345555664 57888888875432  


Q ss_pred             eeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC--CCCcceEEEECCCCCEEEEEcCCCc
Q 020021          197 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDGS  274 (332)
Q Consensus       197 ~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~v~~spdg~~l~sgs~Dg~  274 (332)
                      ...+...+  .. =.++  .||+.+..+.....++.+|..+-+....+.....  .....+.+.| -+|...|-.-..-.
T Consensus       123 ~~~~~y~~--EG-WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-i~G~IyANVW~td~  196 (264)
T PF05096_consen  123 IGTFPYPG--EG-WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-INGKIYANVWQTDR  196 (264)
T ss_dssp             EEEEE-SS--S---EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-ETTEEEEEETTSSE
T ss_pred             EEEEecCC--cc-eEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE-EcCEEEEEeCCCCe
Confidence            22233222  11 2233  6777788888888999999988777666654311  1223445666 38888888877778


Q ss_pred             EEEEECCCCceEEEec------------CC---CCCCceEEeCCC-eeEEEeccc
Q 020021          275 VYAWSVRSGKEVASWM------------SF---DTEPPVIKWTPG-SLMFVTGSS  313 (332)
Q Consensus       275 i~vWd~~~~~~~~~~~------------~~---~~~v~~l~~sp~-~~~l~t~~~  313 (332)
                      |...|..+|+.+..+.            ..   ..-.+.+||.|. +++++||-.
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            9999999998766441            01   123477999875 577888753

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.33  E-value=1.9  Score=39.78  Aligned_cols=229  Identities=12%  Similarity=0.134  Sum_probs=101.0

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc--------cceeEEEEcc-----CC-
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK--------YGVDLVCFTS-----HP-   88 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~-----~~-   88 (332)
                      ++...--+...+++|++++.|. =.++|.|..||++.|-|......+..-.-..        ..++.+.|.-     ++ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            3555555677799999999974 4599999999999999998777776532111        1244454441     11 


Q ss_pred             --CEEEEecCCCCCceeEEEEcc--C-CceEEEee----cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE-E
Q 020021           89 --TTVIYSSKNGWDESLRLLSLH--D-NKYLRYFK----GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-L  158 (332)
Q Consensus        89 --~~~~~~s~~g~d~~v~v~d~~--~-~~~~~~~~----~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~-~  158 (332)
                        ..++.+..   .+.+.+|.+-  . +.....+.    .|.++|..+.                  ..|..++.... .
T Consensus       154 SSi~L~vGTn---~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~------------------~i~~~~G~~a~At  212 (395)
T PF08596_consen  154 SSICLLVGTN---SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII------------------PINADTGESALAT  212 (395)
T ss_dssp             EEEEEEEEET---TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE------------------EEETTT--B-B-B
T ss_pred             cceEEEEEeC---CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE------------------EEECCCCCcccCc
Confidence              12333332   2345555432  1 11111110    1112222221                  11222221100 0


Q ss_pred             E-EecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEE-----cCCCCEEEEEcCCCeEEE
Q 020021          159 L-RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF-----SNDGRLMLLTTMEGHIHV  232 (332)
Q Consensus       159 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~-----s~dg~~l~~~~~dg~i~i  232 (332)
                      . .+..... . ..-..++.+.....+|++...+.+.   ..... ........+++     ...+..|++-..+|.|++
T Consensus       213 ~~~~~~l~~-g-~~i~g~vVvvSe~~irv~~~~~~k~---~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i  286 (395)
T PF08596_consen  213 ISAMQGLSK-G-ISIPGYVVVVSESDIRVFKPPKSKG---AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI  286 (395)
T ss_dssp             HHHHHGGGG-T-----EEEEEE-SSEEEEE-TT---E---EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred             hhHhhcccc-C-CCcCcEEEEEcccceEEEeCCCCcc---cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence            0 0000000 0 0011244455677888887654321   11111 11111223334     235677788899999999


Q ss_pred             EEccCCeEeEEeeecC-CCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          233 LDSFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       233 ~d~~~~~~~~~~~~~~-~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      +-+-.-+.+....... ...+......|+++|..++-.|... +.++.+
T Consensus       287 ~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE-~~l~sv  334 (395)
T PF08596_consen  287 YSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSE-IQLFSV  334 (395)
T ss_dssp             EETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSE-EEEEEE
T ss_pred             EECCCchHhhcccCCCccccccccccEECCCCCEEEEeCccc-EEEEEE
Confidence            9998877776665421 1222344578899999887765433 444433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.95  E-value=4.8  Score=40.76  Aligned_cols=285  Identities=10%  Similarity=0.140  Sum_probs=141.9

Q ss_pred             cCCCcEEEEEECCCC---C---EEEEEeCCCcEEEEEcCCCeeeEE---eeec--ccceeEEEEccCCCEEEEecCCCCC
Q 020021           32 DYNGRISSMDFHKSS---S---YLVTASDDESIRLYDVTAATCLKT---INSK--KYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg---~---~l~tgs~D~tv~iwd~~~~~~~~~---~~~~--~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      ..+.+|.|+.++|-|   +   +++.|.++..+.+--....-++..   +...  +..+-..++-.+..+++.+..   |
T Consensus       528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalg---d  604 (1096)
T KOG1897|consen  528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALG---D  604 (1096)
T ss_pred             eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcC---C
Confidence            345779999999753   3   789999998877765543333222   2221  112333445444556666553   5


Q ss_pred             ceeEEE--EccCCceE--EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-eEEEcCC--C
Q 020021          101 ESLRLL--SLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQ--G  173 (332)
Q Consensus       101 ~~v~v~--d~~~~~~~--~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~--~  173 (332)
                      +.+.-+  |..++..-  +.-.--+.++.=-.|+..++.-+-+..|+-..++..+..-+...+.+.... .+.+..+  +
T Consensus       605 G~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~  684 (1096)
T KOG1897|consen  605 GALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYP  684 (1096)
T ss_pred             ceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCC
Confidence            666654  45554421  111112334444456555555555556666666654333222222222111 1112111  1


Q ss_pred             eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC-----------CC---eEEEEEccCCe
Q 020021          174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-----------EG---HIHVLDSFRGT  239 (332)
Q Consensus       174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~-----------dg---~i~i~d~~~~~  239 (332)
                      --++.+..+.+++..+...+.-......+.   ...+.+++.+....+.+.+.           +.   .++++|-.+-+
T Consensus       685 d~l~~~~~~~l~i~tid~iqkl~irtvpl~---~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~  761 (1096)
T KOG1897|consen  685 DSLASANGGALTIGTIDEIQKLHIRTVPLG---ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE  761 (1096)
T ss_pred             ceEEEecCCceEEEEecchhhcceeeecCC---CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence            233444566677765543221111122222   23445566553333333222           11   36666666555


Q ss_pred             EeEEeeecC-CCCCcceEEEECCC-CCEEEEEcC----------CCcEEEEECCCCceEEEec--CCCCCCceEEeCCCe
Q 020021          240 LLSTYNVKP-VSRNSTLEASFSPE-GMFVISGSG----------DGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGS  305 (332)
Q Consensus       240 ~~~~~~~~~-~~~~~~~~v~~spd-g~~l~sgs~----------Dg~i~vWd~~~~~~~~~~~--~~~~~v~~l~~sp~~  305 (332)
                      .++..+... ...-.+.++.|.-| +.+++.|..          .|.|.|+.+..++.+....  ...+.+.++. --+|
T Consensus       762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~fng  840 (1096)
T KOG1897|consen  762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-EFNG  840 (1096)
T ss_pred             EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-hhCC
Confidence            544332211 01123334558777 777777753          4677777776644333321  1233344443 2378


Q ss_pred             eEEEeccceEEEeccccc
Q 020021          306 LMFVTGSSELSFWIPDLS  323 (332)
Q Consensus       306 ~~l~t~~~d~~~w~~~~~  323 (332)
                      +++|.-...++++.|-..
T Consensus       841 kllA~In~~vrLye~t~~  858 (1096)
T KOG1897|consen  841 KLLAGINQSVRLYEWTTE  858 (1096)
T ss_pred             eEEEecCcEEEEEEcccc
Confidence            899988888999999776

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.93  E-value=0.12  Score=43.02  Aligned_cols=100  Identities=14%  Similarity=0.160  Sum_probs=59.0

Q ss_pred             CCEEEEEcCCCeEEEEEccC-CeEeEEeeecCCCCCcc-eEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC-C
Q 020021          218 GRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNST-LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD-T  294 (332)
Q Consensus       218 g~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~-~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~-~  294 (332)
                      +..+++|+.+|.|++|.... |.....+.   .....+ .-+.-..++.+..++..||.||.|++...+.+.....|+ .
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~---s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~  146 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC---SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE  146 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhh---cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence            46689999999999998641 11111111   111111 112233456688899999999999999888777666666 3


Q ss_pred             CCceEEeCCCeeEEEec--cce--EEEecc
Q 020021          295 EPPVIKWTPGSLMFVTG--SSE--LSFWIP  320 (332)
Q Consensus       295 ~v~~l~~sp~~~~l~t~--~~d--~~~w~~  320 (332)
                      +...+.-+..++.++.+  |.+  +++|+.
T Consensus       147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  147 SGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             CcceeEEecCCceEEeeccccchhhhhcch
Confidence            33333334444444444  444  555644

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.52  E-value=2  Score=37.32  Aligned_cols=55  Identities=16%  Similarity=0.283  Sum_probs=41.4

Q ss_pred             EECCCCCEEEEEeCC-----CcEEEEEcCCC-eeeEEeeecccceeEEEEccCCCEEEEec
Q 020021           41 DFHKSSSYLVTASDD-----ESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        41 ~~s~dg~~l~tgs~D-----~tv~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      .|||||.+|...=.|     |-|-|||...+ ..+..+..|.-+.+.+.+.+++..++.+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            489999998665444     67899998743 33456777777778899999999888764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.29  E-value=4.1  Score=37.13  Aligned_cols=81  Identities=17%  Similarity=0.192  Sum_probs=42.6

Q ss_pred             EEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe
Q 020021           82 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV  161 (332)
Q Consensus        82 ~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~  161 (332)
                      =||.++|+.++.++...-..++.+.|+++++..+.-.+-.....+..++++.+.++-......++--|+++.+....+..
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            47888998887766433345677778988876554443222233456678888877776667788888888765544444


Q ss_pred             c
Q 020021          162 Q  162 (332)
Q Consensus       162 ~  162 (332)
                      +
T Consensus       121 p  121 (386)
T PF14583_consen  121 P  121 (386)
T ss_dssp             -
T ss_pred             C
Confidence            3

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.23  E-value=0.17  Score=30.26  Aligned_cols=30  Identities=23%  Similarity=0.470  Sum_probs=25.4

Q ss_pred             CceeEEEcCCC---CEEEEEcCCCeEEEEEccC
Q 020021          208 DANVVKFSNDG---RLMLLTTMEGHIHVLDSFR  237 (332)
Q Consensus       208 ~v~~v~~s~dg---~~l~~~~~dg~i~i~d~~~  237 (332)
                      .++++.|||+.   .+++.+-..|.|+++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            36789999855   4899999999999999985

It contains a characteristic DLL sequence motif.

>PHA02713 hypothetical protein; Provisional

Probab=93.80  E-value=3.7  Score=39.94  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=16.7

Q ss_pred             CCCEEEEEcCCC--eEEEEEccCCe
Q 020021          217 DGRLMLLTTMEG--HIHVLDSFRGT  239 (332)
Q Consensus       217 dg~~l~~~~~dg--~i~i~d~~~~~  239 (332)
                      +|+++++|+.++  .+-.||..+.+
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeeecceeehhhcCccccc
Confidence            789999998887  56666665543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.80  E-value=1.8  Score=37.61  Aligned_cols=117  Identities=16%  Similarity=0.233  Sum_probs=80.2

Q ss_pred             cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       203 ~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      .|....+++++|+|+.+.+.+-.+...-.++=...|.++.++.....+..  -.+.+.-+|+|+++=-.++.++++.+..
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~Dp--E~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDP--ETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCCh--hHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            34455689999999999988888887766665567898887765443322  2478888999999888899999998876


Q ss_pred             CceEEEe---------cCC-CCCCceEEeCCCeeEEEeccc-e-EEEeccc
Q 020021          283 GKEVASW---------MSF-DTEPPVIKWTPGSLMFVTGSS-E-LSFWIPD  321 (332)
Q Consensus       283 ~~~~~~~---------~~~-~~~v~~l~~sp~~~~l~t~~~-d-~~~w~~~  321 (332)
                      ...+..+         ..+ +...-.++|.|....|..+-+ + +.++.+.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            5332211         112 455667999997765554433 3 5555443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.66  E-value=4.6  Score=35.48  Aligned_cols=86  Identities=19%  Similarity=0.275  Sum_probs=57.2

Q ss_pred             CCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC------CCCEEEEEcCCCcEEEEECCCCceEEEe
Q 020021          216 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP------EGMFVISGSGDGSVYAWSVRSGKEVASW  289 (332)
Q Consensus       216 ~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp------dg~~l~sgs~Dg~i~vWd~~~~~~~~~~  289 (332)
                      ++++.=+.+..-|.|-+||.. |++++++... ..-+..+.++..|      .|..|+--=-||+|..+|..+++.+..+
T Consensus       210 ~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L  287 (336)
T TIGR03118       210 ADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL  287 (336)
T ss_pred             CcccccccCCCcceEEEEcCC-CcEEEEeccC-CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence            333333445556789999964 7888777432 2335556676654      5677766556999999999999988777


Q ss_pred             cCCCC------CCceEEeCC
Q 020021          290 MSFDT------EPPVIKWTP  303 (332)
Q Consensus       290 ~~~~~------~v~~l~~sp  303 (332)
                      ..-.+      ..+.|+|..
T Consensus       288 ~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       288 LDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             cCCCCCeEEecCeEEeeeCC
Confidence            54332      246788865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.63  E-value=5.6  Score=36.36  Aligned_cols=101  Identities=14%  Similarity=0.159  Sum_probs=54.4

Q ss_pred             ceeEEEcCCCCEEEEEcCCCeEEEE-EccC-------CeEeE-EeeecCC-CCCcceEEEECCCCCEEEEEcCC------
Q 020021          209 ANVVKFSNDGRLMLLTTMEGHIHVL-DSFR-------GTLLS-TYNVKPV-SRNSTLEASFSPEGMFVISGSGD------  272 (332)
Q Consensus       209 v~~v~~s~dg~~l~~~~~dg~i~i~-d~~~-------~~~~~-~~~~~~~-~~~~~~~v~~spdg~~l~sgs~D------  272 (332)
                      ...+++.++| ++++ ... .|..+ |...       .+.+. .+..... +......++|.|||.+.++-+..      
T Consensus        74 p~Gi~~~~~G-lyV~-~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~  150 (367)
T TIGR02604        74 VTGLAVAVGG-VYVA-TPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT  150 (367)
T ss_pred             ccceeEecCC-EEEe-CCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence            4678888888 5554 333 45444 4321       11111 1211100 12234568999999987766621      


Q ss_pred             -------------CcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          273 -------------GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       273 -------------g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                                   |.|.-++...++ +..+..--.....++|+|+|.++++-..
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEccC
Confidence                         345555554433 2322222234578999999998887543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.60  E-value=3.5  Score=34.77  Aligned_cols=48  Identities=17%  Similarity=0.328  Sum_probs=39.6

Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       212 v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      +++..+|.+.++.-..++|..+|..+|+.+.++..   +...+++++|--.
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFgGk  264 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFGGK  264 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEecCC
Confidence            45567899999999999999999999999999885   3567778888543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.60  E-value=7.3  Score=37.58  Aligned_cols=78  Identities=14%  Similarity=0.204  Sum_probs=47.0

Q ss_pred             CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCc--eEEeCCCe
Q 020021          228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP--VIKWTPGS  305 (332)
Q Consensus       228 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~--~l~~sp~~  305 (332)
                      |.+.-+|+.+|+..=......   ..... ...-.+..++.++.||.++++|..+|+.+....... .+.  =+.|.-+|
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~---p~~~~-~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~-~~~a~P~ty~~~G  515 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDF---PLWGG-VLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS-GIVGPPVTYEQDG  515 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCC---CCCCc-ceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC-CceecCEEEEeCC
Confidence            468888888887654332110   00111 112255677788889999999999999987764322 221  14455577


Q ss_pred             eEEEe
Q 020021          306 LMFVT  310 (332)
Q Consensus       306 ~~l~t  310 (332)
                      ++.+.
T Consensus       516 ~qYv~  520 (527)
T TIGR03075       516 KQYVA  520 (527)
T ss_pred             EEEEE
Confidence            65443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.53  E-value=7.9  Score=37.75  Aligned_cols=227  Identities=12%  Similarity=0.133  Sum_probs=108.1

Q ss_pred             CCCEEEEEeCC------CcEEEEEcCCCeeeEE--eeecccceeEEEEccCCCEEEEecCCCCC------ceeEEEEccC
Q 020021           45 SSSYLVTASDD------ESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWD------ESLRLLSLHD  110 (332)
Q Consensus        45 dg~~l~tgs~D------~tv~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d------~~v~v~d~~~  110 (332)
                      .+.+++.||.+      .++..||..+++-...  +..... ...++...+  .+++.  +|.|      .++..||...
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~~--~lYv~--GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLNG--KLYVV--GGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEECC--EEEEE--ccccCCCcccceEEEecCCC
Confidence            35677778887      4788888877633222  221111 122333322  33322  2444      4566777766


Q ss_pred             CceEEE--eecccccEEEEEecCCCCeEEEeeCCC-----cEEEEeCCCceEEEEEEecC-c-eeEEEcCCCe-EEEEEe
Q 020021          111 NKYLRY--FKGHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLLRVQG-R-PAAAYDDQGL-VFAVAF  180 (332)
Q Consensus       111 ~~~~~~--~~~h~~~V~~v~~~~~~~~l~s~s~Dg-----~i~iWd~~~~~~~~~~~~~~-~-~~~~~~~~~~-~~~~~~  180 (332)
                      ++-...  +....... +++. -+|...|.||.||     ++-.||..+++....-.+.. . ...+..-++. ++.+|.
T Consensus       359 ~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             CceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc
Confidence            552211  11111111 1111 2577888999986     47788887776543322211 1 1122223444 444443


Q ss_pred             C------CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCe-----EEEEEccCCeEeEEeeecCC
Q 020021          181 G------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-----IHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       181 ~------~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~  249 (332)
                      +      ..+..||..+..=.  ..-...  ......-.-.-++.+++.|+.++.     |..+|..+.+-...-... .
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~--~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~-~  511 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWT--LIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT-S  511 (571)
T ss_pred             CCCccccceEEEEcCCCCcee--ecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc-c
Confidence            3      34666765432100  000000  000011123346788888887763     667887765543221110 1


Q ss_pred             CCCcceEEEECCCCCEEEEEcCCC-----cEEEEECCCCce
Q 020021          250 SRNSTLEASFSPEGMFVISGSGDG-----SVYAWSVRSGKE  285 (332)
Q Consensus       250 ~~~~~~~v~~spdg~~l~sgs~Dg-----~i~vWd~~~~~~  285 (332)
                      ....+..++  -+++..+.|+.||     +|..||..+.+.
T Consensus       512 ~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  512 PRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             ccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence            111111122  3778888888887     666777665543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.49  E-value=3.8  Score=33.95  Aligned_cols=169  Identities=15%  Similarity=0.165  Sum_probs=83.9

Q ss_pred             CceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEee-CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  178 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      ...|++||+.+++.+..-.-....+.+=-...-++.+.--. .||....+|.++-++...+..++.-=....++..++.+
T Consensus        67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~Lims  146 (262)
T COG3823          67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNLIMS  146 (262)
T ss_pred             cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeeecCCcceEee
Confidence            45799999999887654322112222111111223332222 36667777777766666655444311111222233333


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCC-CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC--------
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--------  249 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------  249 (332)
                      ....+++.=|-..+...........+. ....+.+.+= ||.+++---.+..|...|..+|++...+...+.        
T Consensus       147 dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~  225 (262)
T COG3823         147 DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDK  225 (262)
T ss_pred             CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccc
Confidence            333455554443332111111111111 1223333332 677777666777788888888888776654321        


Q ss_pred             -CCCcceEEEECCCC-CEEEEE
Q 020021          250 -SRNSTLEASFSPEG-MFVISG  269 (332)
Q Consensus       250 -~~~~~~~v~~spdg-~~l~sg  269 (332)
                       +.+....+|+.|++ ++++||
T Consensus       226 ~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         226 SNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cccccccceeecCcCCeEEEec
Confidence             12244568888876 666666

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.49  E-value=5.2  Score=39.02  Aligned_cols=213  Identities=14%  Similarity=0.207  Sum_probs=103.0

Q ss_pred             ceeEEEEccCCceEEEee-cccccEEEEEecCCCCeEEEeeCC------CcEEEEeCCCceEEEEEEecCc--eeEEEcC
Q 020021          101 ESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQGR--PAAAYDD  171 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~D------g~i~iWd~~~~~~~~~~~~~~~--~~~~~~~  171 (332)
                      ..+..+|..++....... .+...-.++++. .+...+.||.|      .++-.+|.+.++....-.+...  ......-
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l  379 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL  379 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence            467788887764332211 111122233333 45788899999      3567788877764432222211  1112222


Q ss_pred             CCeEEE-EEeCC-----EEEEEECccCCCCCeeEEEecCCCC-CceeEEEcCCCCEEEEEcCCC------eEEEEEccCC
Q 020021          172 QGLVFA-VAFGG-----YIRMFDARKYEKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEG------HIHVLDSFRG  238 (332)
Q Consensus       172 ~~~~~~-~~~~~-----~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~v~~s~dg~~l~~~~~dg------~i~i~d~~~~  238 (332)
                      .+.+++ +|.+|     .+-.||.+..+   ...  ++.... .-..-...-+|+++++|+.++      .+..||..++
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~---W~~--va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNK---WTP--VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN  454 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCc---ccc--cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence            444444 44554     46666654321   000  000000 111122345788889988554      4677887765


Q ss_pred             eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC-----cEEEEECCCCceEEE-ecCCCCCCceEEeCCCeeEEEecc
Q 020021          239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-----SVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg-----~i~vWd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      +-...-... ..+.. ..++ .-++..++.||.|+     +|..+|..+.+.... .+........++ .-+++..+.|+
T Consensus       455 ~W~~~~~M~-~~R~~-~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG  530 (571)
T KOG4441|consen  455 TWTLIAPMN-TRRSG-FGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGG  530 (571)
T ss_pred             ceeecCCcc-ccccc-ceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEec
Confidence            432211100 01111 1122 24788888888877     377788877654322 122222111222 23456666666


Q ss_pred             ce-------EEEeccccc
Q 020021          313 SE-------LSFWIPDLS  323 (332)
Q Consensus       313 ~d-------~~~w~~~~~  323 (332)
                      .|       +..|+|...
T Consensus       531 ~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  531 FDGNNNLNTVECYDPETD  548 (571)
T ss_pred             ccCccccceeEEcCCCCC
Confidence            54       555665543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.46  E-value=2.2  Score=39.36  Aligned_cols=99  Identities=10%  Similarity=0.152  Sum_probs=65.7

Q ss_pred             CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecC-CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCC-c
Q 020021          207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG-K  284 (332)
Q Consensus       207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~-~  284 (332)
                      +++.++.||+|.+.+++--.+..|..++..-.+....+...+ .....+....|+.. +.+|-.+..| +-++.+... +
T Consensus        67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekr  144 (657)
T KOG2377|consen   67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKR  144 (657)
T ss_pred             CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhh
Confidence            478999999999999999999999999863322222221111 11223455667554 6777776555 667766443 3


Q ss_pred             eEEEecCCCCCCceEEeCCCeeE
Q 020021          285 EVASWMSFDTEPPVIKWTPGSLM  307 (332)
Q Consensus       285 ~~~~~~~~~~~v~~l~~sp~~~~  307 (332)
                      .+.....|+..|+.-.|.|+.+.
T Consensus       145 slRlVks~~~nvnWy~yc~et~v  167 (657)
T KOG2377|consen  145 SLRLVKSHNLNVNWYMYCPETAV  167 (657)
T ss_pred             hhhhhhhcccCccEEEEccccce
Confidence            35555678888999999998753

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.27  E-value=10  Score=38.29  Aligned_cols=229  Identities=11%  Similarity=0.119  Sum_probs=113.4

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccc--------eeEEEEcc----------------CCCEEEEecCCCCCc
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYG--------VDLVCFTS----------------HPTTVIYSSKNGWDE  101 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~~~~~s~~g~d~  101 (332)
                      +..|..++.++.|.-.|..+|+.+-.+......        ...+++..                .+..++.++.   |+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~---Dg  270 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS---DA  270 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC---CC
Confidence            567777888899999999999988666432210        11122221                2235555543   77


Q ss_pred             eeEEEEccCCceEEEeecccccEE-------------EEEecC--CCCeEEEeeC----------CCcEEEEeCCCceEE
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVV-------------SLSLCS--SKDCFISGSL----------DRTVLLWDQRAEKCQ  156 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~-------------~v~~~~--~~~~l~s~s~----------Dg~i~iWd~~~~~~~  156 (332)
                      .+.-.|.++|+.+..+.. .+.|.             ...-.|  .+..++.|+.          +|.|+-+|.++++..
T Consensus       271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            888889999988766532 22110             011111  1345666643          688999999999877


Q ss_pred             EEEEecCceeEEEcCCCeEEEEEeCC--EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEE
Q 020021          157 GLLRVQGRPAAAYDDQGLVFAVAFGG--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (332)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d  234 (332)
                      -.+.............+.....+..+  ..-.+|.+..    +..+.. +....    .+-...+........+.|...|
T Consensus       350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g----lvy~pt-Gn~~p----d~~g~~r~~~~n~y~~slvALD  420 (764)
T TIGR03074       350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG----LVYLPM-GNQTP----DQWGGDRTPADEKYSSSLVALD  420 (764)
T ss_pred             eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC----eEEEeC-CCccc----cccCCccccCcccccceEEEEe
Confidence            65543110000000112222211111  1111221110    011111 11000    0000001001112245677778


Q ss_pred             ccCCeEeEEeeecCC-------CCCcceEEEECC-CCC---EEEEEcCCCcEEEEECCCCceEEE
Q 020021          235 SFRGTLLSTYNVKPV-------SRNSTLEASFSP-EGM---FVISGSGDGSVYAWSVRSGKEVAS  288 (332)
Q Consensus       235 ~~~~~~~~~~~~~~~-------~~~~~~~v~~sp-dg~---~l~sgs~Dg~i~vWd~~~~~~~~~  288 (332)
                      ..+|+..=.+...++       ...+ .-+.+.. +|+   .++.++.+|.+++.|-.+|+.+..
T Consensus       421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p-~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       421 ATTGKERWVFQTVHHDLWDMDVPAQP-SLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             CCCCceEEEecccCCccccccccCCc-eEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            888876533321110       0111 1123333 664   899999999999999999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.20  E-value=2.2  Score=37.85  Aligned_cols=105  Identities=17%  Similarity=0.215  Sum_probs=57.5

Q ss_pred             CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 020021          207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV  286 (332)
Q Consensus       207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~  286 (332)
                      ..+..+..++||++++++..-.-..-||.-... -..+..  .....+-.+.|+||+...+.+ ..|.|+.=+...  ..
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r--~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~  218 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNR--NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DG  218 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EE
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEcc--CccceehhceecCCCCEEEEe-CCcEEEEccCCC--Cc
Confidence            456777889999988888666566677753211 112221  134667789999999887766 788888887222  12


Q ss_pred             EEecC-------CCCCCceEEeCCCeeEEEeccceEEE
Q 020021          287 ASWMS-------FDTEPPVIKWTPGSLMFVTGSSELSF  317 (332)
Q Consensus       287 ~~~~~-------~~~~v~~l~~sp~~~~l~t~~~d~~~  317 (332)
                      .++..       -.-.+..++|.+++...+.|++...+
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~  256 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL  256 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence            22211       11125778999998888887765333

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.09  E-value=11  Score=38.25  Aligned_cols=99  Identities=15%  Similarity=0.148  Sum_probs=56.4

Q ss_pred             CceeEEEcCC-CCEEEEEcC----------CCeEEEEEccCCeEeEEeeecCCCCCcceEE-EECCCCCEEEEEcCCCcE
Q 020021          208 DANVVKFSND-GRLMLLTTM----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA-SFSPEGMFVISGSGDGSV  275 (332)
Q Consensus       208 ~v~~v~~s~d-g~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v-~~spdg~~l~sgs~Dg~i  275 (332)
                      .+.++.|..| ++++++|+.          .|+|.+|....+..+....-. .-.+.+.++ .|  +|++||+-+  -.|
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~f--ngkllA~In--~~v  850 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVEF--NGKLLAGIN--QSV  850 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhhh--CCeEEEecC--cEE
Confidence            3455668777 788888863          478888887663332221111 111223222 33  788887664  569


Q ss_pred             EEEECCCCceEEEecCCCCCCceEEeCCCeeEEEec
Q 020021          276 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG  311 (332)
Q Consensus       276 ~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~  311 (332)
                      +++++.+++.+..--.+..++..+...-.+..++.|
T Consensus       851 rLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~Vg  886 (1096)
T KOG1897|consen  851 RLYEWTTERELRIECNISNPIIALDLQVKGDEIAVG  886 (1096)
T ss_pred             EEEEccccceehhhhcccCCeEEEEEEecCcEEEEe
Confidence            999998886655443444445555444444444444

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.95  E-value=9.3  Score=36.90  Aligned_cols=110  Identities=15%  Similarity=0.135  Sum_probs=63.6

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecc-cceeE-EEE-------ccCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDL-VCF-------TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY  116 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~-~~v~~-~~~-------~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~  116 (332)
                      +..|..++.++.|.-.|..+|+.+-.+.... ..+.. .+.       .-.+..++.+.   .|+.+...|.++|+.+..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t---~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT---LDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc---CCCEEEEEECCCCCEEee
Confidence            4577778888899999999999886654321 11110 000       11223455554   367888999999998765


Q ss_pred             eec--ccc--cEEEEEecCCCCeEEEee------CCCcEEEEeCCCceEEEEE
Q 020021          117 FKG--HHD--RVVSLSLCSSKDCFISGS------LDRTVLLWDQRAEKCQGLL  159 (332)
Q Consensus       117 ~~~--h~~--~V~~v~~~~~~~~l~s~s------~Dg~i~iWd~~~~~~~~~~  159 (332)
                      ...  +..  .+++--.-.++ .++.++      .+|.|...|.++++.+-.+
T Consensus       146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            542  111  12221111134 444433      3688999999888765443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.82  E-value=1.5  Score=39.52  Aligned_cols=103  Identities=19%  Similarity=0.350  Sum_probs=55.3

Q ss_pred             ceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeE---Ee-eecCCCCCcceEEEECCC----CCEEEEEcCC--------
Q 020021          209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS---TY-NVKPVSRNSTLEASFSPE----GMFVISGSGD--------  272 (332)
Q Consensus       209 v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~---~~-~~~~~~~~~~~~v~~spd----g~~l~sgs~D--------  272 (332)
                      ...++|.|||+++++- ..|.|++++ ..+....   .. ........-...++|+|+    +...++.+..        
T Consensus         4 P~~~a~~pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            3578999999987764 599999999 4455412   22 111222334567899994    4444444422        


Q ss_pred             CcEEEEECCCC-------ceE-EEecC---CCCCCceEEeCCCeeEEEeccc
Q 020021          273 GSVYAWSVRSG-------KEV-ASWMS---FDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       273 g~i~vWd~~~~-------~~~-~~~~~---~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      ..|.-|.+..+       +.+ ..+..   ....-..|.|.|||.+.++.+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            24555555433       111 11222   1122356999999988777553

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.81  E-value=5.8  Score=39.67  Aligned_cols=77  Identities=14%  Similarity=0.218  Sum_probs=50.9

Q ss_pred             CCceeEEEcCCCCEEEEEcCCCeEEEEEccC----------CeE---eEEeee-----cCCCCCcceEEEECCC---CCE
Q 020021          207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----------GTL---LSTYNV-----KPVSRNSTLEASFSPE---GMF  265 (332)
Q Consensus       207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~----------~~~---~~~~~~-----~~~~~~~~~~v~~spd---g~~  265 (332)
                      ..|..+.+||+|++++..+..|-..+ .+..          |..   -+++..     .......+..+.|+|.   +.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            36788999999999999888765433 3211          111   011111     1122345667899986   588


Q ss_pred             EEEEcCCCcEEEEECCCCc
Q 020021          266 VISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       266 l~sgs~Dg~i~vWd~~~~~  284 (332)
                      |+.=..|+++|+||+....
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            9888999999999997644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.79  E-value=0.46  Score=40.02  Aligned_cols=65  Identities=23%  Similarity=0.381  Sum_probs=46.0

Q ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceEEEe------c--------CCCCCCceEEeCCCeeEEEeccc-eEEEecccc
Q 020021          258 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASW------M--------SFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDL  322 (332)
Q Consensus       258 ~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~------~--------~~~~~v~~l~~sp~~~~l~t~~~-d~~~w~~~~  322 (332)
                      .+..++.+|++-+.+|.+++||+.+++.+...      .        .....|..+..+.+|.-+++-+. +...|+.++
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            35568899999999999999999998765432      1        23345677778888887776543 455565544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA03098 kelch-like protein; Provisional

Probab=92.60  E-value=8.2  Score=37.25  Aligned_cols=53  Identities=4%  Similarity=0.034  Sum_probs=27.4

Q ss_pred             EEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-----CcEEEEECCCCce
Q 020021          230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGKE  285 (332)
Q Consensus       230 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-----g~i~vWd~~~~~~  285 (332)
                      +.+||..+++-...-. .+........+.  .+++.++.|+.+     ..+.++|..+.+.
T Consensus       458 v~~yd~~~~~W~~~~~-~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        458 VESYNPVTNKWTELSS-LNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             EEEecCCCCceeeCCC-CCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            7788877654322111 011111111222  377777777764     4678888776543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.52  E-value=0.81  Score=26.80  Aligned_cols=41  Identities=17%  Similarity=0.205  Sum_probs=28.7

Q ss_pred             CCCCEEEEEc-CCCcEEEEECCCCceEEEecCCCCCCceEEeC
Q 020021          261 PEGMFVISGS-GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT  302 (332)
Q Consensus       261 pdg~~l~sgs-~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~s  302 (332)
                      ||+++|+.+. .+++|.++|..+++.+..+.. ......++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence            5777666654 578999999998888777654 3445555553

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.47  E-value=1.9  Score=39.94  Aligned_cols=55  Identities=11%  Similarity=0.117  Sum_probs=45.0

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY   77 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~   77 (332)
                      .+...-.|......+.+|..+|.+++.|....=|.|.++|+.++..++.+++..+
T Consensus       296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            3455556788888899999999998888877779999999999988887776544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.10  E-value=0.84  Score=27.31  Aligned_cols=31  Identities=16%  Similarity=0.328  Sum_probs=26.1

Q ss_pred             CcEEEEEECCCC---CEEEEEeCCCcEEEEEcCC
Q 020021           35 GRISSMDFHKSS---SYLVTASDDESIRLYDVTA   65 (332)
Q Consensus        35 ~~I~~i~~s~dg---~~l~tgs~D~tv~iwd~~~   65 (332)
                      |+|.++.|||++   .+|+-+-.-+.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            578999999865   4888888889999999974

It contains a characteristic DLL sequence motif.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.03  E-value=7.5  Score=33.66  Aligned_cols=224  Identities=12%  Similarity=0.174  Sum_probs=115.3

Q ss_pred             ccCCCEEEEecCCCCCceeEEEEcc-CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEE----
Q 020021           85 TSHPTTVIYSSKNGWDESLRLLSLH-DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----  159 (332)
Q Consensus        85 ~~~~~~~~~~s~~g~d~~v~v~d~~-~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~----  159 (332)
                      ...++.++.|..   ++ +.++++. .....+..  +...|..+...++-+.|+.-+ |+.+.++++..-......    
T Consensus         4 ~~~~~~L~vGt~---~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    4 DSWGDRLLVGTE---DG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             ccCCCEEEEEEC---CC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence            345667777764   33 7888883 33333322  333499999988777666554 499999997543322200    


Q ss_pred             ---------Eec-CceeEEE-----cCCCeEEEEEeCCEEEEEECccCCCC---CeeEEEecCCCCCceeEEEcCCCCEE
Q 020021          160 ---------RVQ-GRPAAAY-----DDQGLVFAVAFGGYIRMFDARKYEKG---PFDIFSVGGDISDANVVKFSNDGRLM  221 (332)
Q Consensus       160 ---------~~~-~~~~~~~-----~~~~~~~~~~~~~~i~vwd~~~~~~~---~~~~~~~~~~~~~v~~v~~s~dg~~l  221 (332)
                               ..+ .+.+..+     ......+.++....|.+|........   .+.-+.+   +..+..++|.  +..+
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l---p~~~~~i~~~--~~~i  151 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL---PDPPSSIAFL--GNKI  151 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc---CCCcEEEEEe--CCEE
Confidence                     111 1111112     23446677777889999887653211   1122222   2456778887  5566


Q ss_pred             EEEcCCCeEEEEEccCCeEeEEeeecCC---------CCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE-EecC
Q 020021          222 LLTTMEGHIHVLDSFRGTLLSTYNVKPV---------SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA-SWMS  291 (332)
Q Consensus       222 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~-~~~~  291 (332)
                      +.+..+ ...+.|+.++.....+.....         ...+. .+---+++.+|++..  . +-++=-..|+... ....
T Consensus       152 ~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~Ll~~~--~-~g~fv~~~G~~~r~~~i~  226 (275)
T PF00780_consen  152 CVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL-GIFQLSDNEFLLCYD--N-IGVFVNKNGEPSRKSTIQ  226 (275)
T ss_pred             EEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCce-EEEEeCCceEEEEec--c-eEEEEcCCCCcCcccEEE
Confidence            666544 467788887665443321110         01122 222224567777542  2 3333223454433 1111


Q ss_pred             CCCCCceEEeCCCeeEEEeccceEEEecccccccc
Q 020021          292 FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG  326 (332)
Q Consensus       292 ~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~~~  326 (332)
                      -+..+..+++... -.++....-+.+|+...++|-
T Consensus       227 W~~~p~~~~~~~p-yli~~~~~~iEV~~~~~~~lv  260 (275)
T PF00780_consen  227 WSSAPQSVAYSSP-YLIAFSSNSIEVRSLETGELV  260 (275)
T ss_pred             cCCchhEEEEECC-EEEEECCCEEEEEECcCCcEE
Confidence            2334455665333 233333444888887655543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.99  E-value=5.2  Score=36.59  Aligned_cols=100  Identities=12%  Similarity=0.239  Sum_probs=55.6

Q ss_pred             CCceeEEEcCCCCEEEEEc-----------CCC-eEEEEEccC--CeEe--EEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021          207 SDANVVKFSNDGRLMLLTT-----------MEG-HIHVLDSFR--GTLL--STYNVKPVSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       207 ~~v~~v~~s~dg~~l~~~~-----------~dg-~i~i~d~~~--~~~~--~~~~~~~~~~~~~~~v~~spdg~~l~sgs  270 (332)
                      .....+++.++|+++++-.           ..+ .|.+++-..  |+..  ..+.   ........+++.++| .++ ++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa---~~l~~p~Gi~~~~~G-lyV-~~   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA---EELSMVTGLAVAVGG-VYV-AT   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee---cCCCCccceeEecCC-EEE-eC
Confidence            3456789999999888753           223 788887543  3322  1221   112234568888999 444 34


Q ss_pred             CCCcEEEE-ECCCC-----c--eE-EEecC----CCCCCceEEeCCCeeEEEecc
Q 020021          271 GDGSVYAW-SVRSG-----K--EV-ASWMS----FDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       271 ~Dg~i~vW-d~~~~-----~--~~-~~~~~----~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      ... |..+ |....     +  .+ ..+..    +......++|.|||.+.++.+
T Consensus        89 ~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        89 PPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             CCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            443 4433 44210     1  12 12222    123367899999998777644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.89  E-value=4.4  Score=38.11  Aligned_cols=70  Identities=14%  Similarity=0.153  Sum_probs=50.6

Q ss_pred             CCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc-eEEEeccccccccccccc
Q 020021          261 PEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDLSKLGAYVGR  331 (332)
Q Consensus       261 pdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~-d~~~w~~~~~~~~~~~~~  331 (332)
                      ....|+|.||.-|-|+++|--..+.-..+.+...+|..+.-+.+|.++.+.+. .+.+-+... +-|++.||
T Consensus       571 TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i-k~g~~aGr  641 (776)
T COG5167         571 TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI-KYGQPAGR  641 (776)
T ss_pred             ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc-ccCCcccc
Confidence            35679999999999999997543333446677788999999999987655554 466666555 55666665

>PRK10115 protease 2; Provisional

Probab=91.73  E-value=16  Score=36.67  Aligned_cols=113  Identities=15%  Similarity=0.157  Sum_probs=68.9

Q ss_pred             CcEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCeeeEE-eeecccceeEEEEccCCCEEEEecCC---CCCceeEE
Q 020021           35 GRISSMDFHKSSSYLVTASDD-----ESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKN---GWDESLRL  105 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D-----~tv~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~---g~d~~v~v  105 (332)
                      -.+..+.+||||++|+-+-+.     .+|++-|+.+++.+.. +..-.   ..++|.++++.++++...   .....+..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            447788899999987654322     3688889988764322 22211   348999999888877542   12356778


Q ss_pred             EEccCC--ceEEEeecccccEE-EEEecCCCCeEEEee---CCCcEEEEeC
Q 020021          106 LSLHDN--KYLRYFKGHHDRVV-SLSLCSSKDCFISGS---LDRTVLLWDQ  150 (332)
Q Consensus       106 ~d~~~~--~~~~~~~~h~~~V~-~v~~~~~~~~l~s~s---~Dg~i~iWd~  150 (332)
                      +++.++  +-...+.+...... .+..+.++++++..+   .++.+.+++.
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            888887  33444554333333 333444777554333   3457888884

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.25  E-value=1.2  Score=37.43  Aligned_cols=71  Identities=21%  Similarity=0.351  Sum_probs=51.3

Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe-eecC----------CCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKP----------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       212 v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~----------~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      +.+...+.++++-+.+|.+++||+.+++.+... ...+          .....+..+.++.+|.-+++-+ +|..+.|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            446678899999999999999999988765432 1111          2334566778888888888775 578899987


Q ss_pred             CCC
Q 020021          281 RSG  283 (332)
Q Consensus       281 ~~~  283 (332)
                      .=+
T Consensus        95 ~L~   97 (219)
T PF07569_consen   95 DLG   97 (219)
T ss_pred             ccc
Confidence            543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.10  E-value=2.5  Score=39.17  Aligned_cols=83  Identities=23%  Similarity=0.370  Sum_probs=54.2

Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC----------------CCE-EEEEc
Q 020021          208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE----------------GMF-VISGS  270 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd----------------g~~-l~sgs  270 (332)
                      .+..++.+|++++.++...-|+|.++|+.++..++-++...-. .+-+--...+.                ..+ ++-+-
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            4677899999999999888899999999988777655421100 00000001111                112 33345


Q ss_pred             CCCcEEEEECCCCceEEEecC
Q 020021          271 GDGSVYAWSVRSGKEVASWMS  291 (332)
Q Consensus       271 ~Dg~i~vWd~~~~~~~~~~~~  291 (332)
                      .-|.|.||.+.+|..+..+..
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEe
Confidence            578999999999998877643

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.36  E-value=1  Score=38.99  Aligned_cols=59  Identities=19%  Similarity=0.425  Sum_probs=46.2

Q ss_pred             EECCCCCEEEEEcCC-----CcEEEEECCCC-ceEEEecCCCCCCceEEeCCCeeEEEeccceEE
Q 020021          258 SFSPEGMFVISGSGD-----GSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS  316 (332)
Q Consensus       258 ~~spdg~~l~sgs~D-----g~i~vWd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~  316 (332)
                      .|||||++|+..-.|     |.|-|||...+ ..+..+..|.=....+.|.+||+.++.+...+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIe  184 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIE  184 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCcee
Confidence            699999999876433     58999999753 346778888877888999999999888765433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.01  E-value=2.2  Score=39.41  Aligned_cols=99  Identities=18%  Similarity=0.327  Sum_probs=67.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeE----EeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK----TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      ..|+|.+|.||+|.+.||.--.|++|-+.+....+...    +-+.....+...+|+.+ ..++..+..|    +.+|-+
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G----~e~y~v  139 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG----IEFYQV  139 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC----eEEEEE
Confidence            45799999999999999999999999999884333221    11223334677788766 4555554334    455554


Q ss_pred             cCCc-eEEEeecccccEEEEEecCCCCeE
Q 020021          109 HDNK-YLRYFKGHHDRVVSLSLCSSKDCF  136 (332)
Q Consensus       109 ~~~~-~~~~~~~h~~~V~~v~~~~~~~~l  136 (332)
                      ...+ .++..+.|...|+.-.|+++.+.+
T Consensus       140 ~pekrslRlVks~~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  140 LPEKRSLRLVKSHNLNVNWYMYCPETAVI  168 (657)
T ss_pred             chhhhhhhhhhhcccCccEEEEccccceE
Confidence            3322 345567788899999999987743

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.46  E-value=1.9  Score=41.81  Aligned_cols=74  Identities=18%  Similarity=0.290  Sum_probs=42.8

Q ss_pred             CCCCEEEEEcCCCeEEEEEccC----CeEeEEeeec-------------------CCCCCcceEEEECC----CCCEEEE
Q 020021          216 NDGRLMLLTTMEGHIHVLDSFR----GTLLSTYNVK-------------------PVSRNSTLEASFSP----EGMFVIS  268 (332)
Q Consensus       216 ~dg~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~-------------------~~~~~~~~~v~~sp----dg~~l~s  268 (332)
                      ++...++.+..||.+..++...    +.........                   .........++.++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3556677777788777776553    2111111100                   00112334566666    7889999


Q ss_pred             EcCCCcEEEEECCCCceEEEe
Q 020021          269 GSGDGSVYAWSVRSGKEVASW  289 (332)
Q Consensus       269 gs~Dg~i~vWd~~~~~~~~~~  289 (332)
                      .+.|+.+|+||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PHA02790 Kelch-like protein; Provisional

Probab=89.31  E-value=20  Score=34.09  Aligned_cols=63  Identities=11%  Similarity=0.049  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-----CcEEEEECCCCc
Q 020021          216 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGK  284 (332)
Q Consensus       216 ~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-----g~i~vWd~~~~~  284 (332)
                      -+|++++.|+   .+.+||..+++-...-.. +........+.  .+|+..+.||.+     .++.++|..+.+
T Consensus       406 ~~~~IYv~GG---~~e~ydp~~~~W~~~~~m-~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        406 FGRRLFLVGR---NAEFYCESSNTWTLIDDP-IYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ECCEEEEECC---ceEEecCCCCcEeEcCCC-CCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            4566666663   456677665433211111 11111111222  377777888754     246666665543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.15  E-value=0.12  Score=51.14  Aligned_cols=118  Identities=16%  Similarity=0.246  Sum_probs=66.3

Q ss_pred             eccCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEEcC--CCeeeEEeeec-----ccceeEEEEccCCCEEEEecCCCCCc
Q 020021           30 FRDYNGRISSMDFH-KSSSYLVTASDDESIRLYDVT--AATCLKTINSK-----KYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        30 l~~h~~~I~~i~~s-~dg~~l~tgs~D~tv~iwd~~--~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      ++|..|.|-.|.|- -+-..++  -.=|.+.+||++  .|+....+.-+     ...+..+.|.|.-..-++.+-+--++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            57788888888884 2222222  233788999986  45443333211     12233444443222111111112256


Q ss_pred             eeEEEEccCCceEEEeecccccEEEEE-----------ecCCCCeEEEeeCCCcEEEEeC
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLS-----------LCSSKDCFISGSLDRTVLLWDQ  150 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~-----------~~~~~~~l~s~s~Dg~i~iWd~  150 (332)
                      ++++..+.+... ..+++|...++.++           .+|||+.|++++.||.+++|-+
T Consensus       206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            677766654332 44556666554433           5789999999999999999964

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.72  E-value=16  Score=32.04  Aligned_cols=43  Identities=12%  Similarity=0.189  Sum_probs=35.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS   74 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~   74 (332)
                      |-...|+++.|+|+.+.|++...-..-.+|=...|+.+.++.-
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL  125 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL  125 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc
Confidence            4445599999999999999999888888887778998887753

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.63  E-value=22  Score=33.55  Aligned_cols=56  Identities=14%  Similarity=0.249  Sum_probs=35.3

Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec---C-CCCCcceEEEECCCC
Q 020021          208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK---P-VSRNSTLEASFSPEG  263 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~-~~~~~~~~v~~spdg  263 (332)
                      ....++|.|||+++++--..|+|++++...+.........   . ....-...++|+|+-
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            4567899999998777665799999986554321111110   0 113445679999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.55  E-value=1.1  Score=43.38  Aligned_cols=38  Identities=26%  Similarity=0.564  Sum_probs=29.2

Q ss_pred             CcEEEEEECC----CCCEEEEEeCCCcEEEEEcCCCeeeEEe
Q 020021           35 GRISSMDFHK----SSSYLVTASDDESIRLYDVTAATCLKTI   72 (332)
Q Consensus        35 ~~I~~i~~s~----dg~~l~tgs~D~tv~iwd~~~~~~~~~~   72 (332)
                      +.+.++.+++    +..+|++.+.|+++|+||+.++.++++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            4455666666    6789999999999999999999997665

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.25  E-value=22  Score=35.59  Aligned_cols=197  Identities=14%  Similarity=0.219  Sum_probs=95.0

Q ss_pred             cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCc----e---------EEEEE-----------EecCceeEEEc----
Q 020021          119 GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE----K---------CQGLL-----------RVQGRPAAAYD----  170 (332)
Q Consensus       119 ~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~----~---------~~~~~-----------~~~~~~~~~~~----  170 (332)
                      .-.+.|...+|+.|.+.+.-...+.+|.+.+-.-.    .         ....+           +..+.-+..-+    
T Consensus       110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp  189 (1243)
T COG5290         110 KVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMP  189 (1243)
T ss_pred             cccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCc
Confidence            34567888999999986666666778887763211    0         00000           00000000001    


Q ss_pred             ---CCCeEEEEEeCCEEEEE--ECccC--------CCCCeeEEEecCC--------CCCceeEEEcCCCCEEEEEcCCCe
Q 020021          171 ---DQGLVFAVAFGGYIRMF--DARKY--------EKGPFDIFSVGGD--------ISDANVVKFSNDGRLMLLTTMEGH  229 (332)
Q Consensus       171 ---~~~~~~~~~~~~~i~vw--d~~~~--------~~~~~~~~~~~~~--------~~~v~~v~~s~dg~~l~~~~~dg~  229 (332)
                         +-|.++++.....+-.|  |..-.        .+..+..++-.|+        ...-..+.+-|.|+.+++-..||.
T Consensus       190 ~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~  269 (1243)
T COG5290         190 YMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGC  269 (1243)
T ss_pred             ccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCC
Confidence               22445555556677777  43211        1112333332222        122344788899999999876653


Q ss_pred             -----EEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCC
Q 020021          230 -----IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG  304 (332)
Q Consensus       230 -----i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~  304 (332)
                           |..+.. .|-.-..+...-........++|......+| .+....+.+|-..+-...-.....-..+.-++|+|.
T Consensus       270 ~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe  347 (1243)
T COG5290         270 STSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPE  347 (1243)
T ss_pred             CCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccceEEEEEEeecCCCcceeeeccc
Confidence                 444442 1211011110000111222345544444443 345678999976654332221112234667889995


Q ss_pred             --eeEEEeccceEEE
Q 020021          305 --SLMFVTGSSELSF  317 (332)
Q Consensus       305 --~~~l~t~~~d~~~  317 (332)
                        ..++.+++.-+..
T Consensus       348 ~~nTl~f~d~~~I~~  362 (1243)
T COG5290         348 EKNTLLFRDGERILR  362 (1243)
T ss_pred             cCcEEEEecCCeEEE
Confidence              4566666654333

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.50  E-value=21  Score=32.05  Aligned_cols=102  Identities=19%  Similarity=0.270  Sum_probs=63.9

Q ss_pred             CceeEEEcCCCCEEEEEcCC------CeEEEEEccCCeEeEEeeecCC------------CCCcceEEEECCCCCEEEEE
Q 020021          208 DANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPV------------SRNSTLEASFSPEGMFVISG  269 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~------------~~~~~~~v~~spdg~~l~sg  269 (332)
                      +..++++.++|.++++.-.+      -.|+.+|.. |+.+..+.....            .+...-.++++|||+.|+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            45567888899988888777      789999876 776655532211            12233368999999977766


Q ss_pred             cC-----CC--c-------EEEEEC--CC-CceEEEe----cC-----CCCCCceEEeCCCeeEEEe
Q 020021          270 SG-----DG--S-------VYAWSV--RS-GKEVASW----MS-----FDTEPPVIKWTPGSLMFVT  310 (332)
Q Consensus       270 s~-----Dg--~-------i~vWd~--~~-~~~~~~~----~~-----~~~~v~~l~~sp~~~~l~t  310 (332)
                      .+     |+  .       ++|+..  .+ ++....+    ..     ....++.+.+-|++++|+-
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            44     22  1       555544  33 2222222    11     2346788889999887765

>PHA03098 kelch-like protein; Provisional

Probab=87.40  E-value=29  Score=33.50  Aligned_cols=175  Identities=8%  Similarity=0.105  Sum_probs=79.1

Q ss_pred             CCCCeEEEeeCCC------cEEEEeCCCceEEEEEEec---CceeEEEcCCCeEEEEEeC-----CEEEEEECccCCCCC
Q 020021          131 SSKDCFISGSLDR------TVLLWDQRAEKCQGLLRVQ---GRPAAAYDDQGLVFAVAFG-----GYIRMFDARKYEKGP  196 (332)
Q Consensus       131 ~~~~~l~s~s~Dg------~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~i~vwd~~~~~~~~  196 (332)
                      .++..++.||.++      .+..+|..+++....-.++   .....+...+..++.+|.+     ..+..||.....   
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~---  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK---  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc---
Confidence            3456777777643      4667887776653322111   1112222233334444433     345667654321   


Q ss_pred             eeEEEecCCCCCceeEEEcCCCCEEEEEcCC------CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021          197 FDIFSVGGDISDANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       197 ~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs  270 (332)
                      ...... .........+..-++++++.|+.+      ..+..||..+.+-...-. .+.....  ..+...+++.++.||
T Consensus       370 W~~~~~-lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~--~~~~~~~~~iyv~GG  445 (534)
T PHA03098        370 WREEPP-LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP-LPISHYG--GCAIYHDGKIYVIGG  445 (534)
T ss_pred             eeeCCC-cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC-CCccccC--ceEEEECCEEEEECC
Confidence            100000 000111112233467888888732      357888887654321111 0111111  122334677777776


Q ss_pred             CCC--------cEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEeccc
Q 020021          271 GDG--------SVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       271 ~Dg--------~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      .+.        .+.++|..+.+..... ...+..-..++ ..++++++.|+.
T Consensus       446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~  496 (534)
T PHA03098        446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGD  496 (534)
T ss_pred             ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCC
Confidence            432        3888998876543221 11111111122 226677777753

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.07  E-value=15  Score=36.41  Aligned_cols=104  Identities=10%  Similarity=0.116  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCCCeEEEEEccC-------C----eE------eEE-eeecCCCCCcceEEEEC--CCCCEEEEEcCCCcE
Q 020021          216 NDGRLMLLTTMEGHIHVLDSFR-------G----TL------LST-YNVKPVSRNSTLEASFS--PEGMFVISGSGDGSV  275 (332)
Q Consensus       216 ~dg~~l~~~~~dg~i~i~d~~~-------~----~~------~~~-~~~~~~~~~~~~~v~~s--pdg~~l~sgs~Dg~i  275 (332)
                      -+..+|+.+.+||.|.+|...+       .    ..      +.. +..  .....++.+++.  ...++||.++.-..|
T Consensus       112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~~~rlIAVSsNs~~V  189 (717)
T PF08728_consen  112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYKKSRLIAVSSNSQEV  189 (717)
T ss_pred             CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecCcceEEEEecCCceE
Confidence            3557889999999999996521       0    00      000 111  112466788888  788999988888889


Q ss_pred             EEEECCC--CceEEE-ecCCCCCCceEEeCCCe------eEEEeccceEEEeccc
Q 020021          276 YAWSVRS--GKEVAS-WMSFDTEPPVIKWTPGS------LMFVTGSSELSFWIPD  321 (332)
Q Consensus       276 ~vWd~~~--~~~~~~-~~~~~~~v~~l~~sp~~------~~l~t~~~d~~~w~~~  321 (332)
                      .||-...  .+.... -..+...|++|+|-++.      ..+++++-...+|.++
T Consensus       190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            9887654  222111 11355679999997653      2566555444444433

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.89  E-value=24  Score=36.86  Aligned_cols=31  Identities=16%  Similarity=0.370  Sum_probs=26.5

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTA   65 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~   65 (332)
                      .....++|+|...++|-+..++.+++|-...
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccc
Confidence            4566789999999999999999999997643

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.70  E-value=35  Score=33.86  Aligned_cols=93  Identities=20%  Similarity=0.329  Sum_probs=54.9

Q ss_pred             CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC-----
Q 020021          207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-----  281 (332)
Q Consensus       207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~-----  281 (332)
                      +.+.-+.+||.+++++.-+..|.|.+.+.+..+.+.+++... + .+       |+  .++=+|.|..+..|+..     
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~-~-~~-------p~--qm~WcgndaVvl~~e~~l~lvg  285 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD-H-DP-------PK--QMAWCGNDAVVLSWEVNLMLVG  285 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC-C-Cc-------hH--hceeecCCceEEEEeeeEEEEc
Confidence            456778999999999999999999999887766665554221 1 11       22  22234455666666541     


Q ss_pred             -CCceEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          282 -SGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       282 -~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                       .|..+.-+..++.   -+.-=+||-.+.|.++
T Consensus       286 p~gd~V~f~yd~t~---~l~~E~DGVRI~t~t~  315 (829)
T KOG2280|consen  286 PPGDSVQFYYDETA---ILSAEVDGVRIITSTS  315 (829)
T ss_pred             CCCCccccccCCCc---eeeeccCeeEEeccch
Confidence             2222332222322   2555567766666543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.68  E-value=38  Score=33.66  Aligned_cols=51  Identities=20%  Similarity=0.393  Sum_probs=36.1

Q ss_pred             CcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec--CCCCCCceEEeCC
Q 020021          252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTP  303 (332)
Q Consensus       252 ~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~~~~~v~~l~~sp  303 (332)
                      ..+..+..||+.++||--..+|.|.+-++...+..-.+.  .|. ....++|--
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcg  269 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCG  269 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeec
Confidence            456678999999999999999999999887666544432  332 233556543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=85.55  E-value=23  Score=30.53  Aligned_cols=103  Identities=22%  Similarity=0.285  Sum_probs=62.6

Q ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEE-ccCCeEeE-EeeecCCCCCcceEEEECCCCCEEEEEc---CCCcEEEEECC---
Q 020021          210 NVVKFSNDGRLMLLTTMEGHIHVLD-SFRGTLLS-TYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVYAWSVR---  281 (332)
Q Consensus       210 ~~v~~s~dg~~l~~~~~dg~i~i~d-~~~~~~~~-~~~~~~~~~~~~~~v~~spdg~~l~sgs---~Dg~i~vWd~~---  281 (332)
                      ..-.|+++|...+....+...+++. ...+.... ..... .....|.++.+||||..+|-..   .++.|+|=-+.   
T Consensus        69 ~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~  147 (253)
T PF10647_consen   69 TRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG  147 (253)
T ss_pred             ccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence            3447888988888777666666663 33333221 11111 1112788999999999888776   35677776553   


Q ss_pred             CC--ceE----EEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          282 SG--KEV----ASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       282 ~~--~~~----~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      .+  ..+    .........+..++|.+++.+++.+..
T Consensus       148 ~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~  185 (253)
T PF10647_consen  148 DGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS  185 (253)
T ss_pred             CCCcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence            23  111    111233457889999999988877654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.46  E-value=26  Score=31.13  Aligned_cols=106  Identities=21%  Similarity=0.264  Sum_probs=55.4

Q ss_pred             CCceeEEEcCCCCEEEEEcCCCeEEEEE-ccCCeEeEEeeecC-CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 020021          207 SDANVVKFSNDGRLMLLTTMEGHIHVLD-SFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~-~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~  284 (332)
                      ..+..+.|+|++.+.+.+ ..|.|+.-| ...++.-..-.... .....+..++|.+++...|+|+. |++.+ ....|+
T Consensus       187 ~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGk  263 (302)
T PF14870_consen  187 RRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGK  263 (302)
T ss_dssp             S-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTS
T ss_pred             ceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCc
Confidence            357788999998877755 788888877 22222211111110 12223578899999888887764 55544 344444


Q ss_pred             e-EEE--ecCCCCCCceEEeCCCeeEEEeccceE
Q 020021          285 E-VAS--WMSFDTEPPVIKWTPGSLMFVTGSSEL  315 (332)
Q Consensus       285 ~-~~~--~~~~~~~v~~l~~sp~~~~l~t~~~d~  315 (332)
                      . .+.  ....++....|.|.++.+-|+-|...+
T Consensus       264 tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~  297 (302)
T PF14870_consen  264 TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV  297 (302)
T ss_dssp             S-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred             cceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence            3 222  123445678899977777787776553

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=84.91  E-value=33  Score=31.83  Aligned_cols=105  Identities=18%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEe--EEeeecCC--CCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL--STYNVKPV--SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~--~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      ..+..+.+.++|.+++++ ..|.+..-+ ..+..-  .++.....  ....+..+.|.+++..+++| ..|.+.... ..
T Consensus       281 ~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~  356 (398)
T PLN00033        281 RRIQNMGWRADGGLWLLT-RGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DG  356 (398)
T ss_pred             cceeeeeEcCCCCEEEEe-CCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CC
Confidence            456788899999988766 555554332 333211  01211111  12346678898888777655 678777764 33


Q ss_pred             Cce---EEEecCCCCCCceEEeCCCeeEEEeccceE
Q 020021          283 GKE---VASWMSFDTEPPVIKWTPGSLMFVTGSSEL  315 (332)
Q Consensus       283 ~~~---~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~  315 (332)
                      ++.   +............+.|.++++.+++|...+
T Consensus       357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~  392 (398)
T PLN00033        357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGV  392 (398)
T ss_pred             CcceeEccccCCCCcceeEEEEcCCCceEEEeCCcE
Confidence            433   111123345677899988888888886653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=84.40  E-value=26  Score=30.19  Aligned_cols=149  Identities=17%  Similarity=0.238  Sum_probs=77.7

Q ss_pred             cEEEEEecCCCCeEEEee--CC-CcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEe-CCEEEEEE-CccCCCCCe
Q 020021          123 RVVSLSLCSSKDCFISGS--LD-RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFD-ARKYEKGPF  197 (332)
Q Consensus       123 ~V~~v~~~~~~~~l~s~s--~D-g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~vwd-~~~~~~~~~  197 (332)
                      .+...+++++++.++...  .+ ..+.++...... ...........-.+++.+.+.+... +...+++. .......+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-RPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-eeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            577889999999877666  33 344444432221 1111111222234455566666554 34445442 221111111


Q ss_pred             eEEEecCCCCCceeEEEcCCCCEEEEEc---CCCeEEEEEcc---CC---eEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021          198 DIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSF---RG---TLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (332)
Q Consensus       198 ~~~~~~~~~~~v~~v~~s~dg~~l~~~~---~dg~i~i~d~~---~~---~~~~~~~~~~~~~~~~~~v~~spdg~~l~s  268 (332)
                      .. ........|..+.+||||..++.-.   .++.|.+--+.   .+   .+.............+..++|.+++.+++.
T Consensus       104 ~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  104 EV-DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             Ee-cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence            11 1111111688999999998776654   35677775432   22   111122222222356778999999998888


Q ss_pred             EcCCC
Q 020021          269 GSGDG  273 (332)
Q Consensus       269 gs~Dg  273 (332)
                      +...+
T Consensus       183 ~~~~~  187 (253)
T PF10647_consen  183 GRSAG  187 (253)
T ss_pred             eCCCC
Confidence            85544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=84.36  E-value=45  Score=32.96  Aligned_cols=157  Identities=12%  Similarity=0.149  Sum_probs=85.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeE--Eeeec-ccceeEEEEcc------CCCEEEEecC-CCCCcee
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK--TINSK-KYGVDLVCFTS------HPTTVIYSSK-NGWDESL  103 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~--~~~~~-~~~v~~~~~~~------~~~~~~~~s~-~g~d~~v  103 (332)
                      .+.|-+|.|.++++.++..-..|.|.+||...+..-.  .+... ...+.--+|.+      ....++..+. .+..-..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            4567799999999999999999999999993222111  11111 11010001211      1223333332 2333567


Q ss_pred             EEEEcc-CCceEEEee---cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-c------eeEEEcCC
Q 020021          104 RLLSLH-DNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-R------PAAAYDDQ  172 (332)
Q Consensus       104 ~v~d~~-~~~~~~~~~---~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~------~~~~~~~~  172 (332)
                      |++.+. ....+..+.   -+........|+.....|.-- .+++|.+|++..-+....+..+. .      ......+.
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s  287 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS  287 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Confidence            888871 122233332   222333445566533322222 67899999987666666665541 1      11222344


Q ss_pred             CeEEEEEeCCEEEEEECcc
Q 020021          173 GLVFAVAFGGYIRMFDARK  191 (332)
Q Consensus       173 ~~~~~~~~~~~i~vwd~~~  191 (332)
                      ...+..+.+++|.+.|+..
T Consensus       288 ~nRvLLs~~nkIyLld~~~  306 (670)
T PF10395_consen  288 PNRVLLSVNNKIYLLDLKF  306 (670)
T ss_pred             CCeEEEEcCCEEEEEeehh
Confidence            5555677788999999753

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=84.30  E-value=0.86  Score=45.39  Aligned_cols=105  Identities=21%  Similarity=0.362  Sum_probs=61.8

Q ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE-----------EEECCCCCEEEEEcCCCcEEEE
Q 020021          210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE-----------ASFSPEGMFVISGSGDGSVYAW  278 (332)
Q Consensus       210 ~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----------v~~spdg~~l~sgs~Dg~i~vW  278 (332)
                      ..+-|-+...++..+-.++.|++....+... ..++   .|...++.           -..||||..+|.+..||.++.|
T Consensus       187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r---sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR---SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             eecccccccceeeeccCCCceeEeeechHHH-HHHH---hcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence            3344555556667777778888766543221 1122   13232222           2479999999999999998888


Q ss_pred             ECC-----CCceEEEecCCCCCCceEEe--CCC---------eeEEEeccc---eEEEec
Q 020021          279 SVR-----SGKEVASWMSFDTEPPVIKW--TPG---------SLMFVTGSS---ELSFWI  319 (332)
Q Consensus       279 d~~-----~~~~~~~~~~~~~~v~~l~~--sp~---------~~~l~t~~~---d~~~w~  319 (332)
                      .+-     .-++++.+..|++.. .++|  +..         -+++++++.   +.++|.
T Consensus       263 Qiyi~g~~~~rclhewkphd~~p-~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~  321 (1283)
T KOG1916|consen  263 QIYITGKIVHRCLHEWKPHDKHP-RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA  321 (1283)
T ss_pred             eeeeeccccHhhhhccCCCCCCC-ceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence            762     234466677777432 2333  222         245666654   377774

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=83.87  E-value=12  Score=36.59  Aligned_cols=109  Identities=10%  Similarity=0.126  Sum_probs=64.0

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEc--cCCCEEEEecCCCCCceeEEEEcc---
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFT--SHPTTVIYSSKNGWDESLRLLSLH---  109 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~~~~s~~g~d~~v~v~d~~---  109 (332)
                      ..+-+.-|.-++..+.-+.-.++.|||...+.....-. .....|..+.|.  |++..+++.   |..+.|.++--.   
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaV---Gf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAV---GFPHHVLLYTQLRYD  107 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEE---EcCcEEEEEEccchh
Confidence            34444555544444444445689999998877443322 234456666665  455555544   446777776432   


Q ss_pred             --CCc----eEE--Eeeccc-ccEEEEEecCCCCeEEEeeCCCcEEEEe
Q 020021          110 --DNK----YLR--YFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWD  149 (332)
Q Consensus       110 --~~~----~~~--~~~~h~-~~V~~v~~~~~~~~l~s~s~Dg~i~iWd  149 (332)
                        +..    .++  .+..|+ .+|....|.++|..++.+|.  .+.+.|
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d  154 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD  154 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence              111    122  234566 68999999999987776654  455655

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=83.24  E-value=27  Score=29.64  Aligned_cols=103  Identities=13%  Similarity=0.202  Sum_probs=65.2

Q ss_pred             eeEEEcCCCCE-EEEEcCCCeEEEEE--ccCCeEeEE---eeecC-C--CCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          210 NVVKFSNDGRL-MLLTTMEGHIHVLD--SFRGTLLST---YNVKP-V--SRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       210 ~~v~~s~dg~~-l~~~~~dg~i~i~d--~~~~~~~~~---~~~~~-~--~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      +.++++.|.+. ...-+.+-.|..||  ..+|.+...   +.+.. .  .....-..+...+|...++.-..++|.-.|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            56778877754 45567788888888  555543321   11111 0  0011112344557777777777889999999


Q ss_pred             CCCceEEEecCCCCCCceEEeCCC--eeEEEecc
Q 020021          281 RSGKEVASWMSFDTEPPVIKWTPG--SLMFVTGS  312 (332)
Q Consensus       281 ~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~t~~  312 (332)
                      .+|+.+.++.--...+++.+|---  ..+.+|+.
T Consensus       241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence            999999888766788999999543  23444443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=81.78  E-value=51  Score=31.90  Aligned_cols=70  Identities=7%  Similarity=0.094  Sum_probs=42.0

Q ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE-cCCCcEEEEECC
Q 020021          210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVYAWSVR  281 (332)
Q Consensus       210 ~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg-s~Dg~i~vWd~~  281 (332)
                      ..|.++|...++++=+....-.+.+.......-....  ...+.+.+.+|.+||+.|+.+ +.-=.-+|||-.
T Consensus       116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CcccccCCCceEEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            4577888888877766555444444432221111111  123567788999999877766 433367899854

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=81.50  E-value=63  Score=32.57  Aligned_cols=93  Identities=9%  Similarity=0.111  Sum_probs=53.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC--CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~  110 (332)
                      -...|..|.++|+|.+||-.|..+ |.|-.+-.  |.. ..+......+                      .+|.+.+..
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~-~~~~~g~~~i----------------------~Crt~~v~~  138 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKN-GEFEDGKKEI----------------------NCRTVPVDE  138 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCcc-ccccCCCcce----------------------eEEEEEech
Confidence            345688999999999998888755 33433321  000 0011111111                      122222211


Q ss_pred             CceEEEeecccccEEEEEecCC---CCeEEEeeCCCcEEEEeCCC
Q 020021          111 NKYLRYFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRA  152 (332)
Q Consensus       111 ~~~~~~~~~h~~~V~~v~~~~~---~~~l~s~s~Dg~i~iWd~~~  152 (332)
                      .  +. ...+...|..+.|+|.   +.+|+-=..|+++|+||+..
T Consensus       139 ~--~~-~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  139 R--FF-TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             h--hc-cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            1  11 1234567889999986   46888888999999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=80.38  E-value=22  Score=30.39  Aligned_cols=111  Identities=16%  Similarity=0.211  Sum_probs=61.7

Q ss_pred             EEcCCCCEEEEEcCC---CeEEEEEccC---CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC-cEEEEECCC--C
Q 020021          213 KFSNDGRLMLLTTME---GHIHVLDSFR---GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVRS--G  283 (332)
Q Consensus       213 ~~s~dg~~l~~~~~d---g~i~i~d~~~---~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg-~i~vWd~~~--~  283 (332)
                      ++-+||+++.+|+..   ..+++++...   .....+....-....+-..+.--|||+.|+.|+.+. +...|.-..  .
T Consensus        73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~  152 (243)
T PF07250_consen   73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP  152 (243)
T ss_pred             CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence            467899999887642   3588888644   111111100001122223345558999999998875 344444321  1


Q ss_pred             ceEEE-ecCC------CCCCceEEeCCCeeEEEeccceEEEeccccc
Q 020021          284 KEVAS-WMSF------DTEPPVIKWTPGSLMFVTGSSELSFWIPDLS  323 (332)
Q Consensus       284 ~~~~~-~~~~------~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~  323 (332)
                      ..... +...      ...-.-+-..|||++|+.+..+-.++++...
T Consensus       153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n  199 (243)
T PF07250_consen  153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTN  199 (243)
T ss_pred             CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCC
Confidence            11111 1110      0111345568999999999988888888654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	332
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-19
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-19
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-19
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-19
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-19
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-19
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-19
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-19
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-19
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-19
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-19
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-04
2h9l_A	329	Wdr5delta23 Length = 329		2e-19
2h9l_A	329	Wdr5delta23 Length = 329		5e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-19
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-19
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-19
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		8e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		7e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-07
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-07
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-07
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-07
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		5e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		6e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		6e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-04

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 132/274 (48%), Gaps = 12/274 (4%)
Query: 17  SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
           SE +  +  +  +   +   +SS+ F  +  +L ++S D+ I+++        KTI+  K
Sbjct: 9   SEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 77  YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
            G+  V ++S    ++ +S    D++L++  +   K L+  KGH + V   +     +  
Sbjct: 69  LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
           +SGS D +V +WD +  KC   L     P +A     D  L+ + ++ G  R++D     
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 182
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
            G      +  D    + VKFS +G+ +L  T++  + + D  +G  L TY     +   
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 241
Query: 254 TLEASFSPE-GMFVISGSGDGSVYAWSVRSGKEV 286
            + A+FS   G +++SGS D  VY W++++ KE+
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEI 274

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 107 KGHSN---------YVFCC----------------------------------NFNPQSN 123
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 181 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 237

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 132/274 (48%), Gaps = 12/274 (4%)
Query: 17  SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
           SE +  +  +  +   +   +SS+ F  +  +L ++S D+ I+++        KTI+  K
Sbjct: 9   SEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 77  YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
            G+  V ++S    ++ +S    D++L++  +   K L+  KGH + V   +     +  
Sbjct: 69  LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
           +SGS D +V +WD +  KC   L     P +A     D  L+ + ++ G  R++D     
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 182
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
            G      +  D    + VKFS +G+ +L  T++  + + D  +G  L TY     +   
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 241
Query: 254 TLEASFSPE-GMFVISGSGDGSVYAWSVRSGKEV 286
            + A+FS   G +++SGS D  VY W++++ KE+
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEI 274

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 107 KGHSN---------YVFCC----------------------------------NFNPQSN 123
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 181 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 237

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 131/274 (47%), Gaps = 12/274 (4%)
Query: 17  SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
           SE +  +  +  +   +   +SS+ F  +  +L  +S D+ I+++        KTI+  K
Sbjct: 9   SEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHK 68
Query: 77  YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
            G+  V ++S    ++ +S    D++L++  +   K L+  KGH + V   +     +  
Sbjct: 69  LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
           +SGS D +V +WD +  KC   L     P +A     D  L+ + ++ G  R++D     
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 182
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
            G      +  D    + VKFS +G+ +L  T++  + + D  +G  L TY     +   
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 241
Query: 254 TLEASFSPE-GMFVISGSGDGSVYAWSVRSGKEV 286
            + A+FS   G +++SGS D  VY W++++ KE+
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEI 274

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 107 KGHSN---------YVFCC----------------------------------NFNPQSN 123
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 181 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 237

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 92  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 264
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 265 NLVYIWNLQT-KEI 277

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 50  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 110 KGHSN---------YVFCC----------------------------------NFNPQSN 126
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 184 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 240

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 131/274 (47%), Gaps = 12/274 (4%)
Query: 17  SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
           S  +  +  +  +   +   +SS+ F  +  +L ++S D+ I+++        KTI+  K
Sbjct: 5   STPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 64
Query: 77  YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
            G+  V ++S    ++ +S    D++L++  +   K L+  KGH + V   +     +  
Sbjct: 65  LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
           +SGS D +V +WD +  KC   L     P +A     D  L+ + ++ G  R++D     
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 178
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
            G      +  D    + VKFS +G+ +L  T++  + + D  +G  L TY     +   
Sbjct: 179 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 237
Query: 254 TLEASFSPE-GMFVISGSGDGSVYAWSVRSGKEV 286
            + A+FS   G +++SGS D  VY W++++ KE+
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEI 270

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 43  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 102
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 103 KGHSN---------YVFCC----------------------------------NFNPQSN 119
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 177 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 233

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 31  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 91  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 147
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 204
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 263
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 264 NLVYIWNLQT-KEI 276

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 49  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 109 KGHSN---------YVFCC----------------------------------NFNPQSN 125
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 183 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 239

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 92  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 264
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 265 NLVYIWNLQT-KEI 277

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 50  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 110 KGHSN---------YVFCC----------------------------------NFNPQSN 126
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 184 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 240

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 92  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 264
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 265 NLVYIWNLQT-KEI 277

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 50  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 110 KGHSN---------YVFCC----------------------------------NFNPQSN 126
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 184 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 240

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 22  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 82  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 138
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 195
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 254
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 255 NLVYIWNLQT-KEI 267

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 40  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 99
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 100 KGHSN---------YVFCC----------------------------------NFNPQSN 116
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 174 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 230

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 86  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 199
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 258
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 259 NLVYIWNLQT-KEI 271

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 44  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 104 KGHSN---------YVFCC----------------------------------NFNPQSN 120
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 178 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 234

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 27  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 87  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 143
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 200
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 259
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 260 NLVYIWNLQT-KEI 272

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 45  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 104
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 105 KGHSN---------YVFCC----------------------------------NFNPQSN 121
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 179 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 235

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 50  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 110 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 166
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 223
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 282
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 283 NLVYIWNLQT-KEI 295

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 68  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 128 KGHSN---------YVFCC----------------------------------NFNPQSN 144
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 202 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 258

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 43  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 102
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 103 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 159
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 216
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 217 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 275
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 276 NLVYIWNLQT-KEI 288

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 61  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 120
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 121 KGHSN---------YVFCC----------------------------------NFNPQSN 137
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 195 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 251

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 86  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 199
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 258
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 259 NLVYIWNLQT-KEI 271

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 44  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 104 KGHSN---------YVFCC----------------------------------NFNPQSN 120
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 178 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 234

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 48  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 108 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 164
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 221
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 280
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 281 NLVYIWNLQT-KEI 293

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 66  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
           +              VF                                     F+    
Sbjct: 126 KGHSN---------YVFCC----------------------------------NFNPQSN 142
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
           L++  + +  + + D   G  L T    P   +      F+ +G  ++S S DG    W 
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
             SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y G K
Sbjct: 200 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 256

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 124/254 (48%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +   C 
Sbjct: 89  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 261
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 262 NMVYIWNLQT-KEI 274

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 62/243 (25%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 RVQGRP--AAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
           +          ++ Q  L+ + +F   +R++D +                          
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------------------------ 142
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 276
               M L T+  H                  PVS        F+ +G  ++S S DG   
Sbjct: 143 ----MCLKTLPAH----------------SDPVS-----AVHFNRDGSLIVSSSYDGLCR 177
Query: 277 AWSVRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYV 329
            W   SG+ + + +  D  PPV  +K++P    ++  T  ++L  W  D SK   L  Y 
Sbjct: 178 IWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNDLKLW--DYSKGKCLKTYT 234
Query: 330 GRK 332
           G K
Sbjct: 235 GHK 237

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 124/254 (48%), Gaps = 12/254 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +   C 
Sbjct: 89  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SGS D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 261
Query: 273 GSVYAWSVRSGKEV 286
             VY W++++ KE+
Sbjct: 262 NMVYIWNLQT-KEI 274

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 62/243 (25%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 RVQGRP--AAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
           +          ++ Q  L+ + +F   +R++D +                          
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------------------------ 142
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 276
               M L T+  H                  PVS        F+ +G  ++S S DG   
Sbjct: 143 ----MCLKTLPAH----------------SDPVS-----AVHFNRDGSLIVSSSYDGLCR 177
Query: 277 AWSVRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYV 329
            W   SG+ + + +  D  PPV  +K++P    ++  T  + L  W  D SK   L  Y 
Sbjct: 178 IWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 234
Query: 330 GRK 332
           G K
Sbjct: 235 GHK 237

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 47/244 (19%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS-S 95
           +S+  F  S   ++TAS D +  L+DV +   L++ +   +G D++C    P+    +  
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG--HGADVLCLDLAPSETGNTFV 214
Query: 96  KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
             G D+   +  +   + ++ F+ H   V S+    S D F SGS D T  L+D RA+  
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-- 272
Query: 156 QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS 215
                   R  A Y  + ++F                                A+ V FS
Sbjct: 273 --------REVAIYSKESIIFG-------------------------------ASSVDFS 293
Query: 216 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 275
             GRL+     +  I+V D  +G+ +S       +R STL    SP+G    SGS D ++
Sbjct: 294 LSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGHENRVSTLR--VSPDGTAFCSGSWDHTL 350
Query: 276 YAWS 279
             W+
Sbjct: 351 RVWA 354

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 14/220 (6%)
Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAY 169
           K  R  KGH ++V+ +  C  K   +S S D  V++WD      +  + +      A AY
Sbjct: 55  KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 170 DDQGLVFAVAFGG-------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML 222
              G   A+A GG       Y   FD  K E       SV    +  +   F+N    +L
Sbjct: 115 APSGC--AIACGGLDNKCSVYPLTFD--KNENMAAKKKSVAMHTNYLSACSFTNSDMQIL 170
Query: 223 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 282
             + +G   + D   G LL +++         L+ + S  G   +SG  D     W +RS
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADV-LCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Query: 283 GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 322
           G+ V ++ + +++   +++ P    F +GS + +  + DL
Sbjct: 230 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 29  SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +   +   +G + S+ N +  S DG L+     +G I + +      + T +    ++
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 237
Query: 252 NSTLEASFSPEGMFVISGSGDG 273
           +     +FSP   ++ + +  G
Sbjct: 238 DEVFSLAFSPNRYWLAAATATG 259

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 29  SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +   +   +G + S+ N +  S DG L+     +G I + +      + T +    ++
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 237
Query: 252 NSTLEASFSPEGMFVISGSGDG 273
           +     +FSP   ++ + +  G
Sbjct: 238 DEVFSLAFSPNRYWLAAATATG 259

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 29  SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +   +   +G + S+ N +  S DG L+     +G I + +      + T +    ++
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 237
Query: 252 NSTLEASFSPEGMFVISGSGDG 273
           +     +FSP   ++ + +  G
Sbjct: 238 DEVFSLAFSPNRYWLAAATATG 259

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 29  SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +   +   +G + S+ N +  S DG L+     +G I + +      + T +    ++
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 237
Query: 252 NSTLEASFSPEGMFVISGSGDG 273
           +     +FSP   ++ + +  G
Sbjct: 238 DEVFSLAFSPNRYWLAAATATG 259

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 29  SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 58
Query: 88  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 59  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 118
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 119 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 176
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +   +   +G + S+ N +  S DG L+     +G I + +      + T +    ++
Sbjct: 177 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 231
Query: 252 NSTLEASFSPEGMFVISGSGDG 273
           +     +FSP   ++ + +  G
Sbjct: 232 DEVFSLAFSPNRYWLAAATATG 253

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 29/247 (11%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           ++ + FH   S +V+AS+D +I+++D       +T+      V  + F  H   ++ S  
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCS 169
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D +++L      + +R   GH   V S+S+  + D  +S S D+T+ +W+ +   C 
Sbjct: 170 A--DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 157 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
                                     ++RM   R  + G   I S   D +    V  + 
Sbjct: 228 KTF------------------TGHREWVRM--VRPNQDGTL-IASCSNDQTVRVWVVATK 266
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 276
           + +  L      H HV++       S+Y+    +  S  + S  P G F++SGS D ++ 
Sbjct: 267 ECKAEL----REHRHVVECISWAPESSYSSISEATGSETKKSGKP-GPFLLSGSRDKTIK 321
Query: 277 AWSVRSG 283
            W V +G
Sbjct: 322 MWDVSTG 328

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 58/266 (21%)
Query: 29  SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
              V          Y+    WD++LRL  +   +  + F GH   V S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD 198
           GS D+T+ +W  + +    LL         ++D        +   +R+    K +     
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL--------GHND--------WVSQVRVVPNEKADDDSVT 168
Query: 199 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258
           I S G D      VK  N  +  +     GH                    S  +TL A 
Sbjct: 169 IISAGND----KXVKAWNLNQFQIEADFIGH-------------------NSNINTLTA- 204
Query: 259 FSPEGMFVISGSGDGSVYAWSVRSGK 284
            SP+G  + S   DG +  W++ + K
Sbjct: 205 -SPDGTLIASAGKDGEIXLWNLAAKK 229

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 111/271 (40%), Gaps = 51/271 (18%)
Query: 33  YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
           ++  ++ + F      + +ASDD++++L++      L+T+      V  V F+    T+ 
Sbjct: 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIA 319
Query: 93  YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152
            +S    D++++L +  + ++L+   GH   V  ++         S S D+TV LW++  
Sbjct: 320 SASD---DKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375
Query: 153 EKCQGLL----RVQG---RP-----AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 200
           +  Q L      V+G    P     A+A DD+ +      G  ++             ++
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VW 430
Query: 201 SVGGDISDANVVKFSNDGRL-------MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
            V     D  +   S+D  +        LL T+ GH     S RG               
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVRG--------------- 472
Query: 254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGK 284
               +FSP+G  + S S D +V  W+ R+G+
Sbjct: 473 ---VAFSPDGQTIASASDDKTVKLWN-RNGQ 499

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 112/253 (44%), Gaps = 24/253 (9%)
Query: 47  SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106
           + +++ S D ++++++     C+ T+      V   C   H   V+  S+   D +LR+ 
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSR---DATLRVW 224
Query: 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDC--FISGSLDRTVLLWDQRAEKCQGLLRVQGR 164
            +   + L    GH    V+   C   D    +SG+ D  V +WD   E C  L  +QG 
Sbjct: 225 DIETGQCLHVLMGH----VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC--LHTLQGH 278
Query: 165 PAAAYDDQ--GL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM 221
               Y  Q  G+ V + +    IR++D    E G   I ++ G  S  + ++  ++  ++
Sbjct: 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDV---ETGNC-IHTLTGHQSLTSGMELKDN--IL 332
Query: 222 LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 281
           +    +  + + D   G  L T       +++     F+    FVI+ S DG+V  W ++
Sbjct: 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLK 390
Query: 282 SGKEVASWMSFDT 294
           +G+ + + ++ ++
Sbjct: 391 TGEFIRNLVTLES 403

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 47/190 (24%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D  +R+  + + K +   +GH   + SL    S D  +SGS DRTV +WD R  +C   L
Sbjct: 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
            ++        D     AV+ G                                   DG+
Sbjct: 204 SIE--------DGVTTVAVSPG-----------------------------------DGK 220
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS----RNSTLEASFSPEGMFVISGSGDGSV 275
            +   +++  + V DS  G L+   + +  S    ++S     F+ +G  V+SGS D SV
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 276 YAWSVRSGKE 285
             W++++   
Sbjct: 281 KLWNLQNANN 290

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 91/255 (35%), Gaps = 61/255 (23%)
Query: 45  SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP---TTVIYSS------ 95
           ++  +V+AS D+SI L+ +T        + K YGV     T H      V+ SS      
Sbjct: 394 NADIIVSASRDKSIILWKLTK-------DDKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL 446
Query: 96  KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
              WD  LRL  L      R F GH   V+S++        +S S DRT+ LW+   E C
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-C 505
Query: 156 QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD--IFSVGGDISDANVVK 213
           +  +   G                  G+       ++        I S   D      VK
Sbjct: 506 KYTISEGGE-----------------GHRDWVSCVRFSPNTLQPTIVSASWD----KTVK 544
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 273
             N     L +T+ GH   + +                      + SP+G    SG  DG
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTV---------------------AVSPDGSLCASGGKDG 583
Query: 274 SVYAWSVRSGKEVAS 288
            V  W +  GK++ S
Sbjct: 584 VVLLWDLAEGKKLYS 598

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 104/284 (36%), Gaps = 60/284 (21%)
Query: 13  SLELSEEILQSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKT 71
           +L     + + M +  + + +NG ++ +         +++AS D++I ++ +T       
Sbjct: 17  NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR------ 70
Query: 72  INSKKYGVDLVCFTSHP---TTVIYSS------KNGWDESLRLLSLHDNKYLRYFKGHHD 122
            +   YG+       H    + V+ SS         WD +LRL  L      R F GH  
Sbjct: 71  -DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK 129
Query: 123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG 182
            V+S++  S     +SGS D+T+ LW+     C+    VQ    + +     V  V F  
Sbjct: 130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCK--YTVQDESHSEW-----VSCVRFS- 180
Query: 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 242
                        P  I S G D     +VK  N     L T   GH   L++       
Sbjct: 181 --------PNSSNPI-IVSCGWD----KLVKVWNLANCKLKTNHIGHTGYLNT------- 220
Query: 243 TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 286
                          + SP+G    SG  DG    W +  GK +
Sbjct: 221 --------------VTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 102/277 (36%), Gaps = 60/277 (21%)
Query: 20  ILQSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYG 78
           + + M +  + + +NG ++ +         +++AS D++I ++ +T        +   YG
Sbjct: 1   MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR-------DETNYG 53
Query: 79  VDLVCFTSHP---TTVIYSS------KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL 129
           +       H    + V+ SS         WD +LRL  L      R F GH   V+S++ 
Sbjct: 54  IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 113
Query: 130 CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA 189
            S     +SGS D+T+ LW+     C+    VQ    + +     V  V F         
Sbjct: 114 SSDNRQIVSGSRDKTIKLWNTLGV-CK--YTVQDESHSEW-----VSCVRFS-------- 157
Query: 190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 249
                 P  I S G D     +VK  N     L T   GH   L++              
Sbjct: 158 -PNSSNPI-IVSCGWD----KLVKVWNLANCKLKTNHIGHTGYLNT-------------- 197
Query: 250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 286
                   + SP+G    SG  DG    W +  GK +
Sbjct: 198 -------VTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 61/165 (36%), Gaps = 47/165 (28%)
Query: 119 GHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA 177
           GH   V+SLS+ S + + FISGS D TV LWD         LR+  R    Y        
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWD---------LRITSRAVRTYH------- 246
Query: 178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237
                                     G   D N VKF  DG+     + +G   + D   
Sbjct: 247 --------------------------GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 238 GTLLSTYNVKPVSRNSTL----EASFSPEGMFVISGSGDGSVYAW 278
           G  L  YN +P   ++ L      +FS  G  + +G  +G  Y W
Sbjct: 281 GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
           +++  +F + + R+  +DFH +  +++T      + L++      +++I   +  V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
           F +    +I  S    D  +R+ + +  + +  F+ H D + S+++  +K   +SGS D 
Sbjct: 63  FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWD 149
           TV LW+
Sbjct: 120 TVKLWN 125

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 113/270 (41%), Gaps = 30/270 (11%)
Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
           +++  +F + + R+  +DFH +  +++T      + L++      +++I   +  V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
           F +    +I  S    D  +R+ + +  + +  F+ H D + S+++  +K   +SGS D 
Sbjct: 63  FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD---- 198
           TV LW+   E    L +  +G        +  V  VAF       D   +  G  D    
Sbjct: 120 TVKLWNW--ENNWALEQTFEGH-------EHFVMCVAFNPK----DPSTFASGCLDRTVK 166
Query: 199 IFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE- 256
           ++S+G    +  +      G   +    +    +++ +     +  ++ +  S  +TLE 
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 257 -------ASFSPEGMFVISGSGDGSVYAWS 279
                  A F P    +ISGS DG++  W+
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 113/270 (41%), Gaps = 30/270 (11%)
Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
           +++  +F + + R+  +DFH +  +++T      + L++      +++I   +  V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
           F +    +I  S    D  +R+ + +  + +  F+ H D + S+++  +K   +SGS D 
Sbjct: 63  FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD---- 198
           TV LW+   E    L +  +G        +  V  VAF       D   +  G  D    
Sbjct: 120 TVKLWNW--ENNWALEQTFEGH-------EHFVMCVAFNPK----DPSTFASGCLDRTVK 166
Query: 199 IFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE- 256
           ++S+G    +  +      G   +    +    +++ +     +  ++ +  S  +TLE 
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 257 -------ASFSPEGMFVISGSGDGSVYAWS 279
                  A F P    +ISGS DG++  W+
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 33  YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
           +   ++ +DF     Y+V+AS D +I++++ +    ++T+N  K G+   C       V+
Sbjct: 255 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVV 310
Query: 93  YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
             S    D ++RL  +     LR  +GH + V  +   + +   +SG+ D  + +WD
Sbjct: 311 SGSS---DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWD 362

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
           +++  +F + + R+  +DFH +  +++T      + +++      +++I   +  V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
           F +    +I  S    D  +R+ + +  + +  F+ H D + S+++  +K   +SGS D 
Sbjct: 63  FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWD 149
           TV LW+
Sbjct: 120 TVKLWN 125

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 19/216 (8%)
Query: 111 NKYLRYFK---GHHDRVVSLSLCSSK----DCFISGSLDRTVLLWDQRAEKCQGLLRVQG 163
           N+Y   FK    H D + S++  ++K    +  ++GSLD  V +W  R E+      ++G
Sbjct: 19  NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG 78
Query: 164 RPAAAYD-DQGLVFAVA----FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG 218
                   D      +A       +IR++D    ++    I S+     DA  + FS D 
Sbjct: 79  HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ----IKSIDAGPVDAWTLAFSPDS 134
Query: 219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAW 278
           + +   T  G +++     G    + + +       L  ++SP+G ++ SG+ DG +  +
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTR---GKFILSIAYSPDGKYLASGAIDGIINIF 191
Query: 279 SVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314
            + +GK + +          + ++P S + VT S +
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD 227

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 29/190 (15%)
Query: 30  FRDYNGRISSMDF--HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           F  +N  +  +D   +K+  Y+VT S D ++ ++ +   + +   + +++   LV  T  
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-HGEEHDYPLVFHTPE 257
Query: 88  PTTVIYSSKNGWDESLRLLSLHDN-------------------KYLRYFKGHHDRVVSLS 128
                     G   S+R +S H N                   K L    GH DR+ S  
Sbjct: 258 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317
Query: 129 LCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA----YDDQGLVFAVAFGGYI 184
               +   IS S+D T+ +WD   E  + +  +QG  A        D+ LV A A  G I
Sbjct: 318 YDHERKRCISASMDTTIRIWD--LENGELMYTLQGHTALVGLLRLSDKFLVSAAA-DGSI 374
Query: 185 RMFDARKYEK 194
           R +DA  Y +
Sbjct: 375 RGWDANDYSR 384

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVD 80
            E   +   +   + S+ +  S + L T S D+S+ +++V       C+  +NS    V 
Sbjct: 95  FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 81  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFIS 138
            V +  HP+  + +S + +D++++L    ++ ++     +GH   V SL+   S     S
Sbjct: 155 HVVW--HPSQELLASAS-YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211
Query: 139 GSLDRTVLLWDQ 150
            S DRTV +W Q
Sbjct: 212 CSDDRTVRIWRQ 223

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.98
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.77
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.7
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.65
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.65
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.65
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.64
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.64
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.62
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.59
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.51
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.5
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.5
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.45
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.43
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.42
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.42
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.41
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.41
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.4
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.36
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.3
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.29
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.25
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.25
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.22
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.2
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.17
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.15
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.14
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.12
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.11
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.11
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.1
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.09
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.09
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.08
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.08
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.03
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.02
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.02
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.0
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.0
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.99
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.99
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.97
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.93
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.91
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.9
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.84
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.84
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.81
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.8
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.74
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.73
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.69
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.68
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.66
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.65
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.65
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.62
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.62
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.57
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.55
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.54
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.53
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.49
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.49
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.42
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.42
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.42
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.25
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.22
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.19
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.18
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.15
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.13
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.11
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.99
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.98
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.94
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.89
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.89
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.8
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.77
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.76
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.69
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.66
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.62
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.59
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.44
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.38
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.37
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.35
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.32
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.3
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.21
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.12
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.96
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.91
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.91
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.89
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.87
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.8
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.76
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.74
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.66
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.58
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.54
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.48
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.46
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.35
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.29
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.11
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.08
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.05
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.75
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.66
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.64
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.63
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.46
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.21
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.21
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.09
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.08
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.01
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.52
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.38
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.35
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.27
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.87
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.8
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.72
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.61
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.63
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.33
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.91
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	89.76
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.57
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.12
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	87.96
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	86.24
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	85.34
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	84.95
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	83.99
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.53
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	82.8
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	81.17
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	81.08

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.7e-46  Score=331.59  Aligned_cols=289  Identities=18%  Similarity=0.255  Sum_probs=247.7

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++..++|++|.+.|.+++|+|++++|++|+.|++|+|||+.+++++..+..|..++..++|+++++.+++++.   |++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---d~~i   79 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD---DFRI   79 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET---TSEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC---CCEE
Confidence            5677899999999999999999999999999999999999999999999999999999999999999998865   8899


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-EEEEEEecC--ceeEEEcC-CC-eEEEE
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQG--RPAAAYDD-QG-LVFAV  178 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~~--~~~~~~~~-~~-~~~~~  178 (332)
                      ++||+.+++.+..+.+|.+.|.+++|+|++++|+||+.|++|++||++++. +...+..+.  .....+++ ++ .++++
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            999999999999999999999999999999999999999999999998763 333443332  34566776 44 46666


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC--CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~--dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  256 (332)
                      +.|+.|++||++.... ..  ....++...+..+.++|  ++.++++++.|++|++||+.+++++..+.   .|...+..
T Consensus       160 s~D~~v~iwd~~~~~~-~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~h~~~v~~  233 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTP-NF--TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSF  233 (304)
T ss_dssp             ETTSEEEEEETTCSSC-SE--EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEE
T ss_pred             eCCCeEEEEECCCCCc-cc--eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC---CCCCCEEE
Confidence            7799999999976432 11  12234445678888876  78899999999999999999999888876   46678889


Q ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCee--EEEeccce-EEEeccc
Q 020021          257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSSE-LSFWIPD  321 (332)
Q Consensus       257 v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~t~~~d-~~~w~~~  321 (332)
                      ++|+|++++|++|+.||+|++||+.+++.+..+..|...+.+++|+|++.  ++++|+.+ ..+|...
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~  301 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG  301 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEec
Confidence            99999999999999999999999999999999999999999999999874  57888776 6677654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.7e-47  Score=348.93  Aligned_cols=284  Identities=18%  Similarity=0.297  Sum_probs=251.9

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      ...|.+|.++|++++|+|++++|+||+.|++|+|||+.++++..++.+|...|..++|++++..+++++.   |++|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~---D~~i~iw  177 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA---DMTIKLW  177 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET---TSCCCEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeC---CCeEEEE
Confidence            5678999999999999999999999999999999999999999999999999999999999998888764   8899999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeE-EEEEeCCE
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLV-FAVAFGGY  183 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~  183 (332)
                      |+.+++++..+.+|...|.+++|+|++++|+||+.|++|++||++++.+...+..+.  .....+++++.+ ++++.|+.
T Consensus       178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence            999999999999999999999999999999999999999999999999887776543  234566676654 45556899


Q ss_pred             EEEEECccCCCCCeeEEEecCCCCCceeEEEcCC--------------------CCEEEEEcCCCeEEEEEccCCeEeEE
Q 020021          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSND--------------------GRLMLLTTMEGHIHVLDSFRGTLLST  243 (332)
Q Consensus       184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--------------------g~~l~~~~~dg~i~i~d~~~~~~~~~  243 (332)
                      |++||++...    ....+.+|...+.+++|+|+                    |.++++++.|+.|++||+.++..+..
T Consensus       258 v~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~  333 (410)
T 1vyh_C          258 VRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT  333 (410)
T ss_dssp             EEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCc----eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            9999997542    12344567778999999997                    67899999999999999999998887


Q ss_pred             eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      +.   .|...+.+++|+|+|++|++|+.||+|++||+.+++++..+..|...|++++|+|++.+|++|+.|  +++|+.
T Consensus       334 ~~---~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          334 LV---GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EE---CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EE---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            76   466788999999999999999999999999999999999999999999999999999999999988  777753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.4e-45  Score=330.53  Aligned_cols=287  Identities=18%  Similarity=0.235  Sum_probs=248.2

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++..++|++|.++|.+++|+|++++|+||+.|++|+|||+.+++++..+..|...|..++|+|++..+++++.   |+.+
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~v  121 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL---DNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET---TCEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeC---CCeE
Confidence            4567889999999999999999999999999999999999999999999999999999999999999988764   8899


Q ss_pred             EEEEccCC----ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeE-E
Q 020021          104 RLLSLHDN----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLV-F  176 (332)
Q Consensus       104 ~v~d~~~~----~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~-~  176 (332)
                      ++||+.++    .....+.+|.+.|.++.|++++ .+++++.|++|++||++++++...+..+.  .....+++++.+ +
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence            99999875    3566788999999999999876 48999999999999999998877765433  345667777654 4


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  256 (332)
                      +++.|+.|++||++...    ......+|...+.+++|+|+|+++++++.||+|++||+.+++.+..+... .+...+.+
T Consensus       201 sg~~d~~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~~~~v~~  275 (340)
T 1got_B          201 SGACDASAKLWDVREGM----CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD-NIICGITS  275 (340)
T ss_dssp             EEETTSCEEEEETTTCS----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-TCCSCEEE
T ss_pred             EEeCCCcEEEEECCCCe----eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC-CcccceEE
Confidence            55568999999997642    23345567788999999999999999999999999999998877665422 23346788


Q ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       257 v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      ++|+|+|++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++.+|++|+.|  +++|+
T Consensus       276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999999999999999999999999999999999999999988  77774

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.2e-46  Score=338.96  Aligned_cols=293  Identities=19%  Similarity=0.322  Sum_probs=245.2

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ....++|.+|.++|++++|+|++++|+||+.|++|+|||+.+++++..+..|...|..++|+|++..+++++   .|+.+
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~---~d~~v  132 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGG---LDSAC  132 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECC---SSSCC
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEee---CCCcE
Confidence            445678999999999999999999999999999999999999999999999999999999999999988775   48999


Q ss_pred             EEEEccCCc-------eEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEe-----c--CceeEE
Q 020021          104 RLLSLHDNK-------YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV-----Q--GRPAAA  168 (332)
Q Consensus       104 ~v~d~~~~~-------~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-----~--~~~~~~  168 (332)
                      ++||+.+..       ....+.+|.+.|.++.|+|+ +..|+||+.|++|++||++++++...+..     +  ......
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence            999986532       34568899999999999996 45799999999999999999888766522     1  122334


Q ss_pred             EcC-CC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021          169 YDD-QG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       169 ~~~-~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                      +.+ ++ .+++++.|+.|++||++.....   .....+|...|.+++|+|+|+++++++.||+|++||+.+++.+..+..
T Consensus       213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~---~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~  289 (380)
T 3iz6_a          213 INSLNANMFISGSCDTTVRLWDLRITSRA---VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR  289 (380)
T ss_dssp             ECSSSCCEEEEEETTSCEEEEETTTTCCC---CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred             eecCCCCEEEEEECCCeEEEEECCCCCcc---eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence            433 34 5666677999999999753221   233456778899999999999999999999999999999998877654


Q ss_pred             cCC----CCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe----cCCCCCCceEEeCCCeeEEEeccce--EE
Q 020021          247 KPV----SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW----MSFDTEPPVIKWTPGSLMFVTGSSE--LS  316 (332)
Q Consensus       247 ~~~----~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~----~~~~~~v~~l~~sp~~~~l~t~~~d--~~  316 (332)
                      ...    +...+..++|+|+|++|++|+.||.|++||+.+++.+..+    ..|...|++++|+|++++|++|+.|  ++
T Consensus       290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~  369 (380)
T 3iz6_a          290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK  369 (380)
T ss_dssp             CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence            321    1234778999999999999999999999999998887776    6799999999999999999999988  88


Q ss_pred             Eecccc
Q 020021          317 FWIPDL  322 (332)
Q Consensus       317 ~w~~~~  322 (332)
                      +|+...
T Consensus       370 iW~~~~  375 (380)
T 3iz6_a          370 IWAFSG  375 (380)
T ss_dssp             EEECCS
T ss_pred             EEecCC
Confidence            887654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.8e-45  Score=326.83  Aligned_cols=287  Identities=19%  Similarity=0.259  Sum_probs=247.8

Q ss_pred             ccceeEeccCCCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCee--eEEeeecccceeEEEEccCCCEEEEecCC
Q 020021           24 MEVGMSFRDYNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~d----g~~l~tgs~D~tv~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~   97 (332)
                      ..+.+.+.+|+++|.+++|+|+    +.+|+||+.|++|+|||+.+++.  ...+.+|...|..+++++++..+++++. 
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~-  100 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL-  100 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-
Confidence            3445677899999999999975    57999999999999999987754  4567889999999999999998888764 


Q ss_pred             CCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeE
Q 020021           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLV  175 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~  175 (332)
                        |++|++||+.+++.+..+..|...+.+++|+|++++|++++.|++|++||+++++....+....  .....+++++.+
T Consensus       101 --D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A          101 --DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             --TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred             --CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence              8899999999999999999999999999999999999999999999999999888776665443  345677787765


Q ss_pred             EEE-EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021          176 FAV-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  254 (332)
Q Consensus       176 ~~~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  254 (332)
                      +++ +.|+.|++||++..+    ....+.++...+.+++|+|+++++++++.|+.|++||+.+++.+..+.   .|...+
T Consensus       179 lasg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v  251 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGK----LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS---GHASWV  251 (321)
T ss_dssp             EEEEETTSCEEEEETTTTE----EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC---CCSSCE
T ss_pred             EEEEcCCCeEEEEECCCCc----EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc---CCCCce
Confidence            554 468999999997532    234456677889999999999999999999999999999988877665   466789


Q ss_pred             eEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       255 ~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      .+++|+|++++|++|+.|++|++||+.+++++..+..|...|.+++|+|++++|++++.|  +++|+.
T Consensus       252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999887  888874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.9e-45  Score=329.93  Aligned_cols=288  Identities=16%  Similarity=0.236  Sum_probs=247.0

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++..++|++|.++|++++|+|++++|+||+.|++|+|||..+++..+.+..+...|..++|+|++..+++++   .|+.+
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~---~d~~i  130 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGG---LDNKC  130 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEES---TTSEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEee---CCCCE
Confidence            456788999999999999999999999999999999999999999999988888899999999999998875   48999


Q ss_pred             EEEEccCC------ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcC--C-
Q 020021          104 RLLSLHDN------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDD--Q-  172 (332)
Q Consensus       104 ~v~d~~~~------~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~--~-  172 (332)
                      ++|++...      .....+.+|.+.|.++.|+|++..|+|++.|++|++||++++++...+..+...  ...+.+  + 
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g  210 (354)
T 2pbi_B          131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG  210 (354)
T ss_dssp             EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred             EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC
Confidence            99998643      245677899999999999999999999999999999999999988777655432  334443  3 


Q ss_pred             CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC
Q 020021          173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  252 (332)
Q Consensus       173 ~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  252 (332)
                      ..+++++.|+.|++||++..+    ......+|...+++++|+|++.++++++.|++|++||++.++.+..+... .+..
T Consensus       211 ~~l~sgs~Dg~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~-~~~~  285 (354)
T 2pbi_B          211 NTFVSGGCDKKAMVWDMRSGQ----CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE-SIIF  285 (354)
T ss_dssp             CEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-TCCS
T ss_pred             CEEEEEeCCCeEEEEECCCCc----EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-Cccc
Confidence            356667779999999998643    23344567788999999999999999999999999999988776655422 2234


Q ss_pred             cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      .+..++|+|+|++|++|+.|++|++||+.+++.+..+..|...|++++|+||+++|++++.|  +++|+
T Consensus       286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            56789999999999999999999999999999999999999999999999999999999988  77774

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-43  Score=314.41  Aligned_cols=296  Identities=21%  Similarity=0.431  Sum_probs=248.9

Q ss_pred             HHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021           20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (332)
Q Consensus        20 ~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   99 (332)
                      +.....+..+|.+|.++|++++|+|++++|++|+.|++|++||+.+++....+..|...|..++|+|+++.+++++.   
T Consensus         9 ~~~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---   85 (312)
T 4ery_A            9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---   85 (312)
T ss_dssp             CCCCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---
T ss_pred             CCCCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC---
Confidence            34556778889999999999999999999999999999999999999999999999999999999999999988864   


Q ss_pred             CceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCe-EE
Q 020021          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGL-VF  176 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~  176 (332)
                      |+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+..+.  .....+++++. ++
T Consensus        86 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
T 4ery_A           86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV  165 (312)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence            8899999999999999999999999999999999999999999999999999988877665443  23456677665 45


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  256 (332)
                      +++.|+.|++||++..+.  .. .....+...+..++|+|+++++++++.|+.|++||+.+++.+..+..+......+..
T Consensus       166 ~~~~d~~i~~wd~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  242 (312)
T 4ery_A          166 SSSYDGLCRIWDTASGQC--LK-TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA  242 (312)
T ss_dssp             EEETTSCEEEEETTTCCE--EE-EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCE
T ss_pred             EEeCCCcEEEEECCCCce--ee-EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEE
Confidence            555689999999976431  11 112234456888999999999999999999999999999988777643222222233


Q ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc--ce--EEEeccc
Q 020021          257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SE--LSFWIPD  321 (332)
Q Consensus       257 v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~--~d--~~~w~~~  321 (332)
                      ....+++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++.++++++  .|  +++|..+
T Consensus       243 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            33447899999999999999999999999999999999999999999999999885  34  8888754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.4e-43  Score=316.36  Aligned_cols=286  Identities=16%  Similarity=0.301  Sum_probs=236.8

Q ss_pred             ccceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCC-----CeeeEEeeecccceeEEEEccCCCEEEEecCC
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTA-----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~   97 (332)
                      +.+..+|.+|+++|.+++|+|++ ++|+||+.|++|++||+..     +.++..+.+|...|..++|++++..+++++. 
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~-   85 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW-   85 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC-
Confidence            45667899999999999999965 8999999999999999863     3456788899999999999999999998864 


Q ss_pred             CCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCC---
Q 020021           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQ---  172 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~---  172 (332)
                        |++|++||+.+++.+..+.+|...|.+++|+|++++|+|++.|++|++||++.. +...+..+.  .....+.+.   
T Consensus        86 --D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           86 --DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             --TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECCC---
T ss_pred             --CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEEEEccCCCC
Confidence              899999999999999999999999999999999999999999999999999754 333333222  223334332   


Q ss_pred             ---C-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecC
Q 020021          173 ---G-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP  248 (332)
Q Consensus       173 ---~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  248 (332)
                         + .+++++.|+.|++||++..+    ......+|...+.+++|+|+|+++++++.||.|++||+.+++.+..+..  
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--  236 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQ----IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--  236 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTE----EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC--
T ss_pred             CCCccEEEEEeCCCEEEEEECCcch----hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC--
Confidence               2 46667779999999997542    2334557778999999999999999999999999999999998877752  


Q ss_pred             CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec--------CCCCCCceEEeCCCeeEEEeccce--EEEe
Q 020021          249 VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--------SFDTEPPVIKWTPGSLMFVTGSSE--LSFW  318 (332)
Q Consensus       249 ~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--------~~~~~v~~l~~sp~~~~l~t~~~d--~~~w  318 (332)
                        ...+..++|+|++.+|++++.+ .+++|++..+..+..+.        .|...+.+++|+|||++|++|+.|  +++|
T Consensus       237 --~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW  313 (319)
T 3frx_A          237 --QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW  313 (319)
T ss_dssp             --CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             --CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence              3578899999999999988755 59999998877666553        245567899999999999999988  8888


Q ss_pred             cccc
Q 020021          319 IPDL  322 (332)
Q Consensus       319 ~~~~  322 (332)
                      +...
T Consensus       314 d~~t  317 (319)
T 3frx_A          314 QVMT  317 (319)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            7643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.6e-43  Score=315.27  Aligned_cols=299  Identities=11%  Similarity=0.224  Sum_probs=235.4

Q ss_pred             hcccceeEeccCCC-cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeE--E-eeecccceeEEEEccCCCEEEEecCC
Q 020021           22 QSMEVGMSFRDYNG-RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK--T-INSKKYGVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        22 ~~~~~~~~l~~h~~-~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~--~-~~~~~~~v~~~~~~~~~~~~~~~s~~   97 (332)
                      .++++.++|.+|.+ .|.+++|+|+|++||||+.|++|+|||+.+++...  . ..+|...|..++|+|++..+++++. 
T Consensus         3 ~~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~-   81 (345)
T 3fm0_A            3 DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF-   81 (345)
T ss_dssp             -CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET-
T ss_pred             ccEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC-
Confidence            45678889999998 99999999999999999999999999998876442  2 2568888999999999999998864 


Q ss_pred             CCCceeEEEEccCCc--eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceE---EEEEEec--CceeEEEc
Q 020021           98 GWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC---QGLLRVQ--GRPAAAYD  170 (332)
Q Consensus        98 g~d~~v~v~d~~~~~--~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~---~~~~~~~--~~~~~~~~  170 (332)
                        |+++++||+..+.  ++..+.+|.+.|.+++|+|++++|+|++.|++|++||++.+..   ...+..+  ......++
T Consensus        82 --D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (345)
T 3fm0_A           82 --DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH  159 (345)
T ss_dssp             --TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred             --CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence              8899999998764  5778999999999999999999999999999999999976543   3333222  23456677


Q ss_pred             CCCe-EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe----------
Q 020021          171 DQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT----------  239 (332)
Q Consensus       171 ~~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~----------  239 (332)
                      +++. +++++.|+.|++||.+...  ......+.+|...|.+++|+|+|++|++++.|++|++||...+.          
T Consensus       160 p~~~~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~  237 (345)
T 3fm0_A          160 PSQELLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS  237 (345)
T ss_dssp             SSSSCEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred             CCCCEEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence            7665 5555668999999986532  12234566788899999999999999999999999999964321          


Q ss_pred             -----EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce---------EEEecCCCCCCceEEeCCCe
Q 020021          240 -----LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE---------VASWMSFDTEPPVIKWTPGS  305 (332)
Q Consensus       240 -----~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~---------~~~~~~~~~~v~~l~~sp~~  305 (332)
                           .+..+  ...|...+..++|+|++.+|++++.|++|++|+...+..         ......|...|++|+|+|++
T Consensus       238 ~~~~~~~~~~--~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~  315 (345)
T 3fm0_A          238 DPSWKCICTL--SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE  315 (345)
T ss_dssp             -CEEEEEEEE--CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred             CCccceeEEe--cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence                 11222  223667889999999999999999999999999865431         12235799999999999998


Q ss_pred             -eEEEeccce--EEEecccc-ccccc
Q 020021          306 -LMFVTGSSE--LSFWIPDL-SKLGA  327 (332)
Q Consensus       306 -~~l~t~~~d--~~~w~~~~-~~~~~  327 (332)
                       .+|++++.|  +++|+... +++.+
T Consensus       316 ~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          316 PGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             TTEEEEEETTSCEEEEEECC------
T ss_pred             ceEEEEcCCCCcEEEEEecCCCCccc
Confidence             599999887  88998643 34444

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4e-43  Score=339.96  Aligned_cols=302  Identities=16%  Similarity=0.253  Sum_probs=242.6

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-------ecccceeEEEEcc
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-------SKKYGVDLVCFTS   86 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~   86 (332)
                      +++|+  ....+..++|.+|.+.|.+++|+|+|++|+||+.|++|+|||+.+++++..+.       +|...|..++|+|
T Consensus       172 v~lwd--~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp  249 (611)
T 1nr0_A          172 VAIFE--GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  249 (611)
T ss_dssp             EEEEE--TTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             EEEEE--CCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence            45565  23456778899999999999999999999999999999999999999988884       6888999999999


Q ss_pred             CCCEEEEecCCCCCceeEEEEccCCceEE-------------------------------------------Eeeccccc
Q 020021           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLR-------------------------------------------YFKGHHDR  123 (332)
Q Consensus        87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~-------------------------------------------~~~~h~~~  123 (332)
                      ++..+++++.   |++|++||+.+++.+.                                           .+.+|...
T Consensus       250 dg~~l~s~s~---D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~  326 (611)
T 1nr0_A          250 DGTKIASASA---DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKA  326 (611)
T ss_dssp             TSSEEEEEET---TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred             CCCEEEEEeC---CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCC
Confidence            9999988864   8899999998766543                                           44589999


Q ss_pred             EEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE-e--cCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCC----
Q 020021          124 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-V--QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGP----  196 (332)
Q Consensus       124 V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~----  196 (332)
                      |++++|+|++++|+|++.|++|++||+.++.+...+. .  .......+.+++.+++++.|+.+++|++.......    
T Consensus       327 v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~  406 (611)
T 1nr0_A          327 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV  406 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccccee
Confidence            9999999999999999999999999999887655431 1  12234566677888888899999999975422100    


Q ss_pred             -------eeEEEe-------------------------cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe
Q 020021          197 -------FDIFSV-------------------------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (332)
Q Consensus       197 -------~~~~~~-------------------------~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (332)
                             ......                         ..+...+.+++|||||+++++++.|++|++||+..+......
T Consensus       407 ~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~  486 (611)
T 1nr0_A          407 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK  486 (611)
T ss_dssp             EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred             eeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeee
Confidence                   000000                         012245678999999999999999999999999876543211


Q ss_pred             eecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC-CceEEE--ecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          245 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS-GKEVAS--WMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       245 ~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~-~~~~~~--~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      .  ..|...+.+++|||||++|++++.|++|++||+.+ ++.+..  +..|...|.+++|+||+++|++++.|  +++|+
T Consensus       487 ~--~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~  564 (611)
T 1nr0_A          487 T--IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  564 (611)
T ss_dssp             E--EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             c--cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence            1  24667899999999999999999999999999987 555443  34499999999999999999999988  88898


Q ss_pred             ccc
Q 020021          320 PDL  322 (332)
Q Consensus       320 ~~~  322 (332)
                      .+.
T Consensus       565 ~~~  567 (611)
T 1nr0_A          565 MNK  567 (611)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.1e-43  Score=318.62  Aligned_cols=285  Identities=15%  Similarity=0.169  Sum_probs=219.7

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC-----------CeeeEEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-----------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   99 (332)
                      ..|...|.+++|+|||.+|++++ |+++|+||...           .........+..+|..++|++++ .+++++.   
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~---  101 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASD---  101 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEET---
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEEC---
Confidence            45788899999999999999888 77888887421           01111122345578999999985 5666654   


Q ss_pred             CceeEEEEccCCceEE----EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCC
Q 020021          100 DESLRLLSLHDNKYLR----YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG  173 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~----~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~  173 (332)
                      |++|++||+.+++.+.    .+.+|.+.|++++|+|++++|+||+.|++|++||++++++...+..+.  .....+.+++
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~  181 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK  181 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred             CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence            8899999999887544    345899999999999999999999999999999999999888776543  3345666654


Q ss_pred             --eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC
Q 020021          174 --LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (332)
Q Consensus       174 --~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (332)
                        .+++++.|++|++||++..+.  ...+....+...+.+++|+|+ ++++++++.||.|++||+.+++.+.++.   .|
T Consensus       182 ~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~---~h  256 (344)
T 4gqb_B          182 DSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA---VH  256 (344)
T ss_dssp             TTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE---CC
T ss_pred             CCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc---CC
Confidence              355667799999999986542  222222223345788999985 5788999999999999999999888776   46


Q ss_pred             CCcceEEEECCCC-CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCee-EEEeccce--EEEecccccccc
Q 020021          251 RNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSSE--LSFWIPDLSKLG  326 (332)
Q Consensus       251 ~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~t~~~d--~~~w~~~~~~~~  326 (332)
                      ...+.+++|+|++ ++||+||.|++|+|||+.+++.+ .+..|...|.+|+|+|++. +|++++.|  +++|+.+.+.++
T Consensus       257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP  335 (344)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred             CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence            7889999999998 68999999999999999887754 5689999999999999985 67788877  888987766554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.4e-42  Score=312.79  Aligned_cols=287  Identities=14%  Similarity=0.229  Sum_probs=229.2

Q ss_pred             hcccceeEeccCCCcEEEEEE-----CC-CCCEEEEEeCCCcEEEEEcCCC-------eeeEEeeecccceeEEEEccCC
Q 020021           22 QSMEVGMSFRDYNGRISSMDF-----HK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHP   88 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~-----s~-dg~~l~tgs~D~tv~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~   88 (332)
                      ..++...+|++|+++|++++|     ++ ++++|+||+.|++|+|||+.+.       .+...+.+|...|..++|++++
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence            345667789999999999999     76 8999999999999999999743       4567788999999999999999


Q ss_pred             CEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE--e--cCc
Q 020021           89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--V--QGR  164 (332)
Q Consensus        89 ~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~--~~~  164 (332)
                      ..+++++.   |++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+..........  .  ...
T Consensus        89 ~~l~s~s~---D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v  165 (343)
T 2xzm_R           89 CFAISSSW---DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV  165 (343)
T ss_dssp             TEEEEEET---TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred             CEEEEEcC---CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence            99888764   8999999999999999999999999999999999999999999999999987443222111  0  112


Q ss_pred             eeEEEcCC-----------CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEE
Q 020021          165 PAAAYDDQ-----------GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL  233 (332)
Q Consensus       165 ~~~~~~~~-----------~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~  233 (332)
                      ....+++.           ..+++++.|+.|++||...     .......+|...+.+++|+|+|+++++++.||.|++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw  240 (343)
T 2xzm_R          166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW  240 (343)
T ss_dssp             EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence            34455554           3566677799999999432     1223445677889999999999999999999999999


Q ss_pred             EccC-CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE--Eec-----------CCCCCCceE
Q 020021          234 DSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA--SWM-----------SFDTEPPVI  299 (332)
Q Consensus       234 d~~~-~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~--~~~-----------~~~~~v~~l  299 (332)
                      |+.. ......+.    +...+.+++|+|++++++++ .|+.|++||+.+++...  .+.           .|...+.++
T Consensus       241 d~~~~~~~~~~~~----~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  315 (343)
T 2xzm_R          241 DILNLTYPQREFD----AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL  315 (343)
T ss_dssp             ESSCCSSCSEEEE----CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred             ECCCCcccceeec----CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence            9844 33333332    23458899999999988755 68889999998766533  333           577789999


Q ss_pred             EeCCCeeEEEeccce--EEEeccc
Q 020021          300 KWTPGSLMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       300 ~~sp~~~~l~t~~~d--~~~w~~~  321 (332)
                      +|+|++++|++|+.|  +++|+.+
T Consensus       316 ~~sp~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          316 AWNALGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             EECSSSCCEEEEETTSEEEEEEEE
T ss_pred             EECCCCCeEEEecCCceEEEEEEE
Confidence            999999999999887  7778754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-43  Score=321.10  Aligned_cols=281  Identities=16%  Similarity=0.166  Sum_probs=219.8

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeC------CCcEEEEEcCCCeeeE----EeeecccceeEEEEccCCCEEEEecCCCC
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASD------DESIRLYDVTAATCLK----TINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~------D~tv~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   99 (332)
                      ...|++.|.+|+|||||++|||||.      |+++++|+..++....    ....|...|..++|+|++..+ +++.   
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~---  113 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASD---  113 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEET---
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEEC---
Confidence            3579999999999999999999997      7889999988776533    334677789999999987544 4443   


Q ss_pred             CceeEEEEccCCceEE----EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCC
Q 020021          100 DESLRLLSLHDNKYLR----YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG  173 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~----~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~  173 (332)
                      |++|++||+.+++...    ...+|.+.|++++|+|++++|++++.|++|++||++++++...+..+.  .....+.+++
T Consensus       114 dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~  193 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK  193 (357)
T ss_dssp             TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTC
T ss_pred             CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCC
Confidence            7899999998876542    345899999999999999999999999999999999998887776543  2345565543


Q ss_pred             --eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCC
Q 020021          174 --LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (332)
Q Consensus       174 --~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (332)
                        .+++++.|+.|++||++..+..  .......+...+.+++|+|++ .++++++.|+.|++||+.+++.+..+.   .+
T Consensus       194 ~~~~~s~~~dg~v~~wd~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~---~~  268 (357)
T 4g56_B          194 DTIFLSCGEDGRILLWDTRKPKPA--TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA---VH  268 (357)
T ss_dssp             SSCEEEEETTSCEEECCTTSSSCB--CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC---CC
T ss_pred             CceeeeeccCCceEEEECCCCcee--eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe---cc
Confidence              5667778999999999865421  112223344568899999985 688899999999999999998887765   46


Q ss_pred             CCcceEEEECCCC-CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCC-CeeEEEeccce--EEEecc
Q 020021          251 RNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       251 ~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~t~~~d--~~~w~~  320 (332)
                      ...+.+++|+|++ ++||+|+.||+|+|||+.+++.+.. ..|...|++|+|+| |+++|+|++.|  +++|+.
T Consensus       269 ~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          269 SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL  341 (357)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence            6788999999997 6899999999999999998877655 47999999999999 78999999987  888875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.4e-42  Score=314.65  Aligned_cols=281  Identities=21%  Similarity=0.369  Sum_probs=231.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc------------------ceeEEEEccCCCEEEE
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY------------------GVDLVCFTSHPTTVIY   93 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~~~~   93 (332)
                      +|.+.|.+++|+|||++||+|+ |++++||++.+++.+..+..+..                  .|..++|+|+++.+++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999976 78999999999998887765432                  3789999999999998


Q ss_pred             ecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-ceeEEEcC-
Q 020021           94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDD-  171 (332)
Q Consensus        94 ~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~-  171 (332)
                      ++.   |++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+.... .....+.+ 
T Consensus       141 ~~~---d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  217 (393)
T 1erj_A          141 GAE---DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  217 (393)
T ss_dssp             EET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             EcC---CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence            864   8899999999999999999999999999999999999999999999999999998876665433 33455665 


Q ss_pred             CCe-EEEEEeCCEEEEEECccCCCCCeeEE-----EecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeE-----
Q 020021          172 QGL-VFAVAFGGYIRMFDARKYEKGPFDIF-----SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-----  240 (332)
Q Consensus       172 ~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~-----~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~-----  240 (332)
                      ++. +++++.|+.|++||++....  ...+     ...+|...+.+++|+|+|+++++++.|+.|++||+.....     
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~  295 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK  295 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcE--EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence            554 55555689999999875321  1111     1135667899999999999999999999999999876432     


Q ss_pred             -------eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCC------CeeE
Q 020021          241 -------LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP------GSLM  307 (332)
Q Consensus       241 -------~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp------~~~~  307 (332)
                             ...+.   .|...+.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|      ++.+
T Consensus       296 ~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~  372 (393)
T 1erj_A          296 TPNSGTCEVTYI---GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV  372 (393)
T ss_dssp             -----CEEEEEE---CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEE
T ss_pred             CCCCCcceEEEe---cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCE
Confidence                   22232   4667888999999999999999999999999999999999999999999999876      6899


Q ss_pred             EEeccce--EEEeccc
Q 020021          308 FVTGSSE--LSFWIPD  321 (332)
Q Consensus       308 l~t~~~d--~~~w~~~  321 (332)
                      |++|+.|  +++|+..
T Consensus       373 l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          373 FATGSGDCKARIWKYK  388 (393)
T ss_dssp             EEEEETTSEEEEEEEE
T ss_pred             EEEECCCCcEEECccc
Confidence            9999988  7777754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-41  Score=302.28  Aligned_cols=290  Identities=17%  Similarity=0.319  Sum_probs=221.4

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC--eeeEEe-ee-cccceeEEEEccCCCEEEEecCC
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTI-NS-KKYGVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~s~~   97 (332)
                      .++++.++|++|+++|.+++|+|+  +|+||+.|++|+|||+.++  +++..+ .. |...|..++|+|++..+++++. 
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-   78 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF-   78 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET-
T ss_pred             cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC-
Confidence            567788999999999999999987  9999999999999999875  455555 34 8888999999999998888764 


Q ss_pred             CCCceeEEEEccC-------CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCc----eEEEEEEecC--c
Q 020021           98 GWDESLRLLSLHD-------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE----KCQGLLRVQG--R  164 (332)
Q Consensus        98 g~d~~v~v~d~~~-------~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~----~~~~~~~~~~--~  164 (332)
                        |++|++||+..       .+.+..+.+|.+.|.+++|+|++++|+||+.|++|++||++..    ++...+..+.  .
T Consensus        79 --D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v  156 (330)
T 2hes_X           79 --DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV  156 (330)
T ss_dssp             --TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred             --CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence              88999999853       3467788999999999999999999999999999999999432    3444443332  3


Q ss_pred             eeEEEcCCCe-EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC--CCEEEEEcCCCeEEEEEccCC---
Q 020021          165 PAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRG---  238 (332)
Q Consensus       165 ~~~~~~~~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--g~~l~~~~~dg~i~i~d~~~~---  238 (332)
                      ....+++++. +++++.|++|++||.+....  .....+.+|...+.+++|+|+  +.++++++.|++|++||+..+   
T Consensus       157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~  234 (330)
T 2hes_X          157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDW--ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED  234 (330)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCCe--eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc
Confidence            4567777665 55555689999999864311  123455678889999999999  778999999999999998654   


Q ss_pred             -----eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc--eEEE-ecCCCC-CCceEEeCC--CeeE
Q 020021          239 -----TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK--EVAS-WMSFDT-EPPVIKWTP--GSLM  307 (332)
Q Consensus       239 -----~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~--~~~~-~~~~~~-~v~~l~~sp--~~~~  307 (332)
                           .....+  ...|...+.+++|+|++ +|++++.||+|+|||..+++  .+.. +..|.. .|.+++|+|  ++++
T Consensus       235 ~~~~~~~~~~~--~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~  311 (330)
T 2hes_X          235 DQQEWVCEAIL--PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI  311 (330)
T ss_dssp             SCEEEEEEEEC--CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred             ccceeEEeeec--ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence                 222222  22367789999999765 88999999999999998764  2333 356776 899999999  7899


Q ss_pred             EEeccce--EEEeccc
Q 020021          308 FVTGSSE--LSFWIPD  321 (332)
Q Consensus       308 l~t~~~d--~~~w~~~  321 (332)
                      |++++.|  +++|+.+
T Consensus       312 las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          312 LATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEEEETTSEEEEEEC-
T ss_pred             EEEecCCCcEEEEEec
Confidence            9999988  7777754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.4e-40  Score=295.74  Aligned_cols=290  Identities=18%  Similarity=0.292  Sum_probs=237.2

Q ss_pred             HhcccceeEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCe-----eeEEeeecccceeEEEEccCCCEEEEe
Q 020021           21 LQSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT-----CLKTINSKKYGVDLVCFTSHPTTVIYS   94 (332)
Q Consensus        21 ~~~~~~~~~l~~h~~~I~~i~~s~d-g~~l~tgs~D~tv~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~   94 (332)
                      -..+++..+|+||+++|++|+|+|+ +++|+|||.|++|+|||+.+.+     +.+++.+|...|..++|++++..++++
T Consensus        25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            3456777899999999999999998 5899999999999999987643     456788899999999999999999988


Q ss_pred             cCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe-c--CceeEEEcC
Q 020021           95 SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-Q--GRPAAAYDD  171 (332)
Q Consensus        95 s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-~--~~~~~~~~~  171 (332)
                      +.   |+.+++|+............+...+..+.++++++.|++++.|+.+++||............ +  ......+.+
T Consensus       105 ~~---d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~  181 (340)
T 4aow_A          105 SW---DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP  181 (340)
T ss_dssp             ET---TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred             cc---cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence            64   88999999999998888899999999999999999999999999999999876544322211 1  122334443


Q ss_pred             C--C-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecC
Q 020021          172 Q--G-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP  248 (332)
Q Consensus       172 ~--~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  248 (332)
                      .  . .+++++.|+.|++||++..+    ......++...+.+++|+|+|+++++++.||.|++||+.+++.+..+.   
T Consensus       182 ~~~~~~~~s~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---  254 (340)
T 4aow_A          182 NSSNPIIVSCGWDKLVKVWNLANCK----LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD---  254 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCc----eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec---
Confidence            2  2 45566678999999997542    233455677889999999999999999999999999999999887765   


Q ss_pred             CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe---------cCCCCCCceEEeCCCeeEEEeccce--EEE
Q 020021          249 VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW---------MSFDTEPPVIKWTPGSLMFVTGSSE--LSF  317 (332)
Q Consensus       249 ~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~---------~~~~~~v~~l~~sp~~~~l~t~~~d--~~~  317 (332)
                       +...+..++|+|++.++ +++.|+.|++||+.++..+..+         ..|...|++++|+||+++|++|+.|  +++
T Consensus       255 -~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i  332 (340)
T 4aow_A          255 -GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV  332 (340)
T ss_dssp             -CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             -CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence             23567889999988766 4567999999999887766554         3678889999999999999999988  888


Q ss_pred             ecccc
Q 020021          318 WIPDL  322 (332)
Q Consensus       318 w~~~~  322 (332)
                      |+...
T Consensus       333 W~~~t  337 (340)
T 4aow_A          333 WQVTI  337 (340)
T ss_dssp             EEEEC
T ss_pred             EeCCC
Confidence            88754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.5e-41  Score=324.46  Aligned_cols=298  Identities=15%  Similarity=0.207  Sum_probs=244.6

Q ss_pred             ceeEecHHHHhcccceeEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCE
Q 020021           12 VSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT   90 (332)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~   90 (332)
                      ..+.+++.    .+...+|.+|.+.|.+++|+|++. +|+||+.|++|++||..+++++.++.+|...|..++|+|++..
T Consensus       129 ~~v~~wd~----~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~  204 (611)
T 1nr0_A          129 GHVFLFDT----GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL  204 (611)
T ss_dssp             EEEEETTT----CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             eEEEEeeC----CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCE
Confidence            35666662    334567899999999999999987 5999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCceeEEEEccCCceEEEee-------cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC
Q 020021           91 VIYSSKNGWDESLRLLSLHDNKYLRYFK-------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG  163 (332)
Q Consensus        91 ~~~~s~~g~d~~v~v~d~~~~~~~~~~~-------~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~  163 (332)
                      +++++.   |++|++||+.+++.+..+.       +|.+.|.+++|+|++++|+|++.|++|++||++++++...+....
T Consensus       205 las~s~---D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~  281 (611)
T 1nr0_A          205 FASTGG---DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT  281 (611)
T ss_dssp             EEEEET---TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEEEC---CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCC
Confidence            988864   8899999999999888884       899999999999999999999999999999999998877765431


Q ss_pred             -----ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC
Q 020021          164 -----RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  238 (332)
Q Consensus       164 -----~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~  238 (332)
                           .....+ ....+++++.++.+++||.....    ......+|...+.+++|+|||+++++++.|++|++||+.++
T Consensus       282 ~~~~~~~~~~~-~~~~l~s~s~d~~i~~~~~~~~~----~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          282 RIEDQQLGIIW-TKQALVSISANGFINFVNPELGS----IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             SGGGCEEEEEE-CSSCEEEEETTCCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CccceeEEEEE-cCCEEEEEeCCCcEEEEeCCCCC----cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence                 112233 45667778889999999976432    23345678889999999999999999999999999999876


Q ss_pred             eEeEEeee-c------------------------------------------------------C---------------
Q 020021          239 TLLSTYNV-K------------------------------------------------------P---------------  248 (332)
Q Consensus       239 ~~~~~~~~-~------------------------------------------------------~---------------  248 (332)
                      +....+.. +                                                      +               
T Consensus       357 ~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~  436 (611)
T 1nr0_A          357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI  436 (611)
T ss_dssp             CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEE
T ss_pred             ceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEE
Confidence            54332100 0                                                      0               


Q ss_pred             ---------CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce--EEEecCCCCCCceEEeCCCeeEEEeccce--E
Q 020021          249 ---------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSSE--L  315 (332)
Q Consensus       249 ---------~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~  315 (332)
                               .+...+.+++|+|||++||+|+.|++|++||+.+++.  +.. ..|...|++++|+||+++|++++.|  +
T Consensus       437 ~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v  515 (611)
T 1nr0_A          437 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKV  515 (611)
T ss_dssp             EETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCE
Confidence                     0112346789999999999999999999999977643  233 6789999999999999999999887  8


Q ss_pred             EEecccc
Q 020021          316 SFWIPDL  322 (332)
Q Consensus       316 ~~w~~~~  322 (332)
                      ++|+...
T Consensus       516 ~~w~~~~  522 (611)
T 1nr0_A          516 IPYSVAN  522 (611)
T ss_dssp             EEEEGGG
T ss_pred             EEEEcCC
Confidence            8887653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.4e-40  Score=314.19  Aligned_cols=281  Identities=20%  Similarity=0.339  Sum_probs=238.8

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~  102 (332)
                      ..+..+.+.+|.++|.+++|+|++++|++++.|++|++||... ..+..+..|...+..++|+|++..+++++.   |+.
T Consensus       292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~  367 (577)
T 2ymu_A          292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASD---DKT  367 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEET---TSE
T ss_pred             CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeC---CCE
Confidence            4566778999999999999999999999999999999999864 456778888889999999999999988865   789


Q ss_pred             eEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEEE-EE
Q 020021          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFA-VA  179 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~  179 (332)
                      +++||. +++.+..+.+|...|++++|+|++++|++++.|++|++||.. ++....+..+.  .....+++++.+++ ++
T Consensus       368 v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~  445 (577)
T 2ymu_A          368 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASAS  445 (577)
T ss_dssp             EEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEc
Confidence            999996 567888999999999999999999999999999999999964 44555554332  23466777765554 55


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~  259 (332)
                      .|+.|++||...    . ....+.++...+.+++|+|||+++++++.|+.|++||. +++.+..+.   .|...+.+++|
T Consensus       446 ~d~~v~~w~~~~----~-~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~---~h~~~v~~l~~  516 (577)
T 2ymu_A          446 DDKTVKLWNRNG----Q-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAF  516 (577)
T ss_dssp             TTSEEEEEETTS----C-EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE---CCSSCEEEEEE
T ss_pred             CCCEEEEEECCC----C-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe---CCCCCEEEEEE
Confidence            689999999632    1 22344567788999999999999999999999999995 677777776   46678999999


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          260 SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       260 spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      +|||++||+++.||+|++||. +++.+..+..|...|++++|+||+++|+|++.|  +++|+
T Consensus       517 s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          517 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999999999999999996 678899999999999999999999999999988  77775

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.8e-40  Score=322.19  Aligned_cols=287  Identities=18%  Similarity=0.276  Sum_probs=235.5

Q ss_pred             hcccceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCC-----CeeeEEeeecccceeEEEEccCCCEEEEec
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTA-----ATCLKTINSKKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      ..++....|++|++.|++|+|+|++ ++|+|||.|++|+|||+.+     +.+...+.+|...|..++|++++..+++++
T Consensus       370 ~~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs  449 (694)
T 3dm0_A          370 AGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS  449 (694)
T ss_dssp             CSSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence            3456667899999999999999875 7999999999999999975     345677889999999999999999999886


Q ss_pred             CCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe-----cCceeEEEc
Q 020021           96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-----QGRPAAAYD  170 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-----~~~~~~~~~  170 (332)
                      .   |++|++||+.+++.+..+.+|...|.+++|+|++++|+|+|.|++|++||............     ....+..++
T Consensus       450 ~---Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  526 (694)
T 3dm0_A          450 W---DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS  526 (694)
T ss_dssp             T---TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred             C---CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence            4   88999999999999999999999999999999999999999999999999865543322211     113456666


Q ss_pred             CCC---eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec
Q 020021          171 DQG---LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (332)
Q Consensus       171 ~~~---~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (332)
                      +++   .+++++.|+.|++||++..+    ....+.+|...+.+++|+|+|+++++++.||.|++||+.+++.+..+.  
T Consensus       527 ~~~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--  600 (694)
T 3dm0_A          527 PNTLQPTIVSASWDKTVKVWNLSNCK----LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--  600 (694)
T ss_dssp             SCSSSCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB--
T ss_pred             CCCCcceEEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec--
Confidence            654   46777789999999997542    233456787889999999999999999999999999999998876654  


Q ss_pred             CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCC-------------------CCceEEeCCCeeEE
Q 020021          248 PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT-------------------EPPVIKWTPGSLMF  308 (332)
Q Consensus       248 ~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~-------------------~v~~l~~sp~~~~l  308 (332)
                        +...+..++|+|++.+|++++ |+.|+|||+.+++.+..+..+..                   .+++++|+|++++|
T Consensus       601 --~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l  677 (694)
T 3dm0_A          601 --ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL  677 (694)
T ss_dssp             --CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred             --CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence              235678899999999988775 56699999999888776643211                   24679999999999


Q ss_pred             Eeccce--EEEecc
Q 020021          309 VTGSSE--LSFWIP  320 (332)
Q Consensus       309 ~t~~~d--~~~w~~  320 (332)
                      ++|+.|  +++|+.
T Consensus       678 ~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          678 FSGYTDGVIRVWGI  691 (694)
T ss_dssp             EEEETTSEEEEEEC
T ss_pred             EEEcCCCeEEEEec
Confidence            999988  666654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-39  Score=293.21  Aligned_cols=294  Identities=13%  Similarity=0.170  Sum_probs=249.1

Q ss_pred             HHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCC
Q 020021           19 EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (332)
Q Consensus        19 ~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g   98 (332)
                      +..++......|.+|.++|++++|+|++++|++++.|++|++||+.+++.+..+..|...|..++|++++..+++++.  
T Consensus        17 ~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--   94 (369)
T 3zwl_B           17 YFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA--   94 (369)
T ss_dssp             CSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred             EEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC--
Confidence            344666667789999999999999999999999999999999999999999999999999999999999999988764  


Q ss_pred             CCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCC-----CcEEEEeCCCceEEEEE-----------Eec
Q 020021           99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLL-----------RVQ  162 (332)
Q Consensus        99 ~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~D-----g~i~iWd~~~~~~~~~~-----------~~~  162 (332)
                       |+.|++||+.+++.+..+. |...|.+++|+|++++|++++.+     +.|++||++.......+           ...
T Consensus        95 -dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  172 (369)
T 3zwl_B           95 -DYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH  172 (369)
T ss_dssp             -TTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred             -CCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence             8899999999999988888 88999999999999999999999     99999998654321111           111


Q ss_pred             ----CceeEEEcCCCeEE-EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC
Q 020021          163 ----GRPAAAYDDQGLVF-AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (332)
Q Consensus       163 ----~~~~~~~~~~~~~~-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~  237 (332)
                          ......+++++..+ +++.++.|++||++...   ........+...+..++|+|+++++++++.|+.|++||+.+
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc---EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence                22345566666544 45568999999997521   12333445667899999999999999999999999999999


Q ss_pred             CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC--------------cEEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021          238 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--------------SVYAWSVRSGKEVASWMSFDTEPPVIKWTP  303 (332)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg--------------~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp  303 (332)
                      ++.+..+.    +...+..++|+|+++++++++.++              .+++||+.+++.+..+..|...|.+++|+|
T Consensus       250 ~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  325 (369)
T 3zwl_B          250 LQVLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP  325 (369)
T ss_dssp             CCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred             Cceeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC
Confidence            98887775    346778899999999999999998              899999999999999999999999999999


Q ss_pred             CeeEEEeccce--EEEeccccc
Q 020021          304 GSLMFVTGSSE--LSFWIPDLS  323 (332)
Q Consensus       304 ~~~~l~t~~~d--~~~w~~~~~  323 (332)
                      ++++|++++.|  +++|+++..
T Consensus       326 ~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          326 QGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             TSSEEEEEETTSEEEEEEECHH
T ss_pred             CCCEEEEEcCCCeEEEEECccc
Confidence            99999999877  888877553

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-39  Score=289.34  Aligned_cols=258  Identities=14%  Similarity=0.211  Sum_probs=223.8

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY   93 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (332)
                      +++|+---....+...|.+|...|.+++|+|++.+++|++.|++|++||+.+++++..+..+...+..++|+|++..+++
T Consensus        60 v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  139 (321)
T 3ow8_A           60 VKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT  139 (321)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEE
T ss_pred             EEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEE
Confidence            45555333344556679999999999999999999999999999999999999999999988888999999999999988


Q ss_pred             ecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcC
Q 020021           94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDD  171 (332)
Q Consensus        94 ~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~  171 (332)
                      ++.   |+.+++||+.+++....+..|...|.+++|+|++++|++++.|++|++||++++++...+..+.  .....+++
T Consensus       140 g~~---dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp  216 (321)
T 3ow8_A          140 GTH---VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP  216 (321)
T ss_dssp             ECT---TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT
T ss_pred             EcC---CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC
Confidence            764   8899999999999999999999999999999999999999999999999999998877775443  34567788


Q ss_pred             CCeEEEE-EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC
Q 020021          172 QGLVFAV-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (332)
Q Consensus       172 ~~~~~~~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (332)
                      ++.++++ +.|+.|++||++...    ....+.+|...+.+++|+|+|+++++++.|++|++||+.+++++.++.   .|
T Consensus       217 d~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~h  289 (321)
T 3ow8_A          217 DSQLLVTASDDGYIKIYDVQHAN----LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF---DH  289 (321)
T ss_dssp             TSCEEEEECTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CC
T ss_pred             CCCEEEEEcCCCeEEEEECCCcc----eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc---CC
Confidence            7765554 468999999997542    233456777889999999999999999999999999999999888775   46


Q ss_pred             CCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021          251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                      ...+..++|+|++++|++++.||+|++||..
T Consensus       290 ~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          290 QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            6789999999999999999999999999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.6e-40  Score=302.54  Aligned_cols=255  Identities=18%  Similarity=0.340  Sum_probs=220.3

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY   93 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (332)
                      +++|+  +.+.+..++|++|.+.|.+++|+|++++|++|+.|++|+|||+.+++++.++.+|...|..++|+|++..+++
T Consensus       132 i~vwd--~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s  209 (410)
T 1vyh_C          132 IKVWD--YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS  209 (410)
T ss_dssp             EEEEE--TTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEE
T ss_pred             EEEEE--CCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEE
Confidence            45554  2345667899999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcC
Q 020021           94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDD  171 (332)
Q Consensus        94 ~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~  171 (332)
                      ++.   |++|++||+.++.++..+.+|...|..+.++|++++|++++.|++|++||++++.+...+..+.  ..+..+.+
T Consensus       210 ~s~---D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~  286 (410)
T 1vyh_C          210 ASR---DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP  286 (410)
T ss_dssp             EET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECC
T ss_pred             EeC---CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcC
Confidence            764   8899999999999999999999999999999999999999999999999999988877664432  23344544


Q ss_pred             C---------------------CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeE
Q 020021          172 Q---------------------GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI  230 (332)
Q Consensus       172 ~---------------------~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i  230 (332)
                      .                     ..+++++.|+.|++||++...    ....+.+|...+.+++|+|+|+++++++.||.|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i  362 (410)
T 1vyh_C          287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL  362 (410)
T ss_dssp             SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred             cccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc----eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            2                     246666678999999997542    234455677889999999999999999999999


Q ss_pred             EEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      ++||+.+++.+..+.   .|...+.+++|+|++.+|++||.||+|++|++
T Consensus       363 ~vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          363 RVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEECCTTSCCCEEEE---CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEECCCCceEEEEc---CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999988887776   46678999999999999999999999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.2e-39  Score=287.90  Aligned_cols=250  Identities=14%  Similarity=0.174  Sum_probs=203.5

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC--CeeeEEeeecccceeEEEEccC--CCEEEEecCCCCCce
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDES  102 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g~d~~  102 (332)
                      +..|.+|++.|.+++|+|+|++||||+.|++|+|||+.+  .+++.++.+|...|..++|+++  +..+++++.   |++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~---D~~   78 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---DGK   78 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET---TTE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC---CCE
Confidence            456899999999999999999999999999999999974  4678899999999999999764  677777764   899


Q ss_pred             eEEEEccCCc--eEEEeecccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021          103 LRLLSLHDNK--YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  178 (332)
Q Consensus       103 v~v~d~~~~~--~~~~~~~h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      |++||+++++  .+..+.+|...|.+++|+|+  +.+|++++.|++|++||++++......                   
T Consensus        79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~-------------------  139 (297)
T 2pm7_B           79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI-------------------  139 (297)
T ss_dssp             EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE-------------------
T ss_pred             EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee-------------------
Confidence            9999998874  56778899999999999997  889999999999999998764211000                   


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-------------CCEEEEEcCCCeEEEEEccCCe----Ee
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-------------GRLMLLTTMEGHIHVLDSFRGT----LL  241 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-------------g~~l~~~~~dg~i~i~d~~~~~----~~  241 (332)
                                            ...+|...+.+++|+|+             ++++++++.|++|++||+.+++    ..
T Consensus       140 ----------------------~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~  197 (297)
T 2pm7_B          140 ----------------------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (297)
T ss_dssp             ----------------------EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             ----------------------eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE
Confidence                                  01123345666777775             6799999999999999998765    33


Q ss_pred             EEeeecCCCCCcceEEEECCCC---CEEEEEcCCCcEEEEECCCCc--e-EEEe--cCCCCCCceEEeCCCeeEEEeccc
Q 020021          242 STYNVKPVSRNSTLEASFSPEG---MFVISGSGDGSVYAWSVRSGK--E-VASW--MSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~spdg---~~l~sgs~Dg~i~vWd~~~~~--~-~~~~--~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      ..+.   .|...+.+++|+|++   ++||+|+.|++|+|||+.+..  . ...+  ..|...+.+++|+|++++|++++.
T Consensus       198 ~~l~---~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~  274 (297)
T 2pm7_B          198 STLE---GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (297)
T ss_dssp             EEEC---CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred             EEec---CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence            3443   577889999999995   899999999999999997643  1 2223  467788999999999999999988


Q ss_pred             e--EEEeccccc
Q 020021          314 E--LSFWIPDLS  323 (332)
Q Consensus       314 d--~~~w~~~~~  323 (332)
                      |  +++|+....
T Consensus       275 D~~v~lw~~~~~  286 (297)
T 2pm7_B          275 DNKVTLWKENLE  286 (297)
T ss_dssp             TSCEEEEEECTT
T ss_pred             CCcEEEEEECCC
Confidence            7  888987643

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.8e-40  Score=299.05  Aligned_cols=290  Identities=14%  Similarity=0.179  Sum_probs=240.0

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe------eeEEeeecccceeEEEEccC----C---CE
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT------CLKTINSKKYGVDLVCFTSH----P---TT   90 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~   90 (332)
                      ....+.|.+|.++|++++|+|  ++|++|+.|++|+|||+.+++      ++..+..|...|..++|+++    +   ..
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            345677899999999999998  799999999999999999888      78888899999999999999    8   88


Q ss_pred             EEEecCCCCCceeEEEEccCCce-----EEEeecc-----cccEEEEEec----CCCCe-EEEeeCCCcEEEEeCCC---
Q 020021           91 VIYSSKNGWDESLRLLSLHDNKY-----LRYFKGH-----HDRVVSLSLC----SSKDC-FISGSLDRTVLLWDQRA---  152 (332)
Q Consensus        91 ~~~~s~~g~d~~v~v~d~~~~~~-----~~~~~~h-----~~~V~~v~~~----~~~~~-l~s~s~Dg~i~iWd~~~---  152 (332)
                      +++++.   |+.|++||+.+++.     +..+.+|     ...|.+++|+    |+++. |++++.||.|++||+++   
T Consensus        84 l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           84 VATTSF---SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEEET---TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEEEcC---CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence            887764   78999999999887     8889999     5999999999    99999 99999999999999987   


Q ss_pred             ---ceEEE-----EEEe---------cCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecC---C---CCCc
Q 020021          153 ---EKCQG-----LLRV---------QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG---D---ISDA  209 (332)
Q Consensus       153 ---~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~---~---~~~v  209 (332)
                         +++..     .+..         .......+++++.+++++.++.|++||++..+    .......   +   ...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLR----PLYNFESQHSMINNSNSI  236 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTE----EEEEEECCC---CCCCCE
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCc----eeEEEeccccccccCCcc
Confidence               55443     4432         12345677777744444457999999997632    2223334   5   6789


Q ss_pred             eeEEEcCCCCEEEEEcCC---CeEEEEEccCCeEeEEeeecC----------CCCCcceEEEECCCCCEEEEEcCCCcEE
Q 020021          210 NVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKP----------VSRNSTLEASFSPEGMFVISGSGDGSVY  276 (332)
Q Consensus       210 ~~v~~s~dg~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~----------~~~~~~~~v~~spdg~~l~sgs~Dg~i~  276 (332)
                      .+++|+|+++++++++.|   +.|++||+.+++.+..+....          .+...+.+++|+|++++|++++.||.|+
T Consensus       237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  316 (397)
T 1sq9_A          237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  316 (397)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            999999999999999999   999999999998887775310          0567889999999999999999999999


Q ss_pred             EEECCCCceEEEec------CC---------------CCCCceEEeCCCe----------eEEEeccce--EEEecccc
Q 020021          277 AWSVRSGKEVASWM------SF---------------DTEPPVIKWTPGS----------LMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       277 vWd~~~~~~~~~~~------~~---------------~~~v~~l~~sp~~----------~~l~t~~~d--~~~w~~~~  322 (332)
                      +||+.+++.+..+.      .|               ...|.+++|+|++          ++|++++.|  +++|+.+.
T Consensus       317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            99999999999888      77               8999999999998          799999877  88887654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.4e-38  Score=304.93  Aligned_cols=299  Identities=19%  Similarity=0.334  Sum_probs=250.5

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY   93 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (332)
                      +.+|+   ...+....+.+|...|.+++|+|++++|++++.|+++++||.. ++.+..+.+|...|..++|+|++..+++
T Consensus       245 i~~w~---~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t  320 (577)
T 2ymu_A          245 VKLWN---RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIAS  320 (577)
T ss_dssp             EEEEC---TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEe---CCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEE
Confidence            44554   2456778899999999999999999999999999999999964 6778888899999999999999999988


Q ss_pred             ecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcC
Q 020021           94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDD  171 (332)
Q Consensus        94 ~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~  171 (332)
                      ++.   |+++++||+.. ..+..+.+|...|.+++|+|++++|++++.|++|++||.. +++...+..+.  .....+++
T Consensus       321 ~~~---d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~  395 (577)
T 2ymu_A          321 ASD---DKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP  395 (577)
T ss_dssp             EET---TSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECT
T ss_pred             EeC---CCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECC
Confidence            764   78999999865 5567889999999999999999999999999999999964 45555554332  23566777


Q ss_pred             CCeEE-EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC
Q 020021          172 QGLVF-AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (332)
Q Consensus       172 ~~~~~-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (332)
                      ++..+ +++.|+.|++||...    . ......++...+..++|+||++++++++.|+.|++||. +++.+..+.   .|
T Consensus       396 dg~~l~~~~~d~~v~~~~~~~----~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~---~~  466 (577)
T 2ymu_A          396 DGQTIASASDDKTVKLWNRNG----Q-LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLT---GH  466 (577)
T ss_dssp             TSSCEEEEETTSEEEEECTTC----C-EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEE---CC
T ss_pred             CCCEEEEEeCCCEEEEEeCCC----C-EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEc---CC
Confidence            77544 455689999999532    1 12334467778999999999999999999999999996 456666655   46


Q ss_pred             CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecccccccccc
Q 020021          251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLGAY  328 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~~~~~  328 (332)
                      ...+.+++|+||+++|++++.|++|++||. +++.+..+..|...|++++|+||+++|++++.|  +++|+.+.+.+..+
T Consensus       467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~  545 (577)
T 2ymu_A          467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL  545 (577)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE
Confidence            678899999999999999999999999996 678899999999999999999999999999887  88999877777777


Q ss_pred             ccc
Q 020021          329 VGR  331 (332)
Q Consensus       329 ~~~  331 (332)
                      .||
T Consensus       546 ~~h  548 (577)
T 2ymu_A          546 TGH  548 (577)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            776

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.7e-39  Score=291.12  Aligned_cols=292  Identities=14%  Similarity=0.185  Sum_probs=231.7

Q ss_pred             hcccceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeEEee--ecccceeEEEEcc-CCCEEEEecCC
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTS-HPTTVIYSSKN   97 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~~~~s~~   97 (332)
                      ..+++.+.+.+|.+.|.+++|+|++ ++|++|+.|++|+|||+.+++....+.  +|...|..++|+| ++..+++++. 
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-  139 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI-  139 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET-
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC-
Confidence            4577788999999999999999999 999999999999999999888877765  5888999999999 5667776654 


Q ss_pred             CCCceeEEEEccCCceEEEeecc---cccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCC
Q 020021           98 GWDESLRLLSLHDNKYLRYFKGH---HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQ  172 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~h---~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~  172 (332)
                        |+.|++||+.+ ..+..+..|   ...|.+++|+|++++|++++.|++|++||++ +++...+..+.  .....++++
T Consensus       140 --d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          140 --RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             --TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSS
T ss_pred             --CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCC
Confidence              88999999986 555666544   4889999999999999999999999999995 55555554332  345667776


Q ss_pred             Ce--EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021          173 GL--VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       173 ~~--~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (332)
                      +.  +++++.|+.|++||++............ ++...+.+++|+| +|+++++++.|+.|++||+.+++.+..+..+..
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  294 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH  294 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence            64  5556678999999998754322222222 4667899999999 999999999999999999988876655543211


Q ss_pred             ----C----------CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecC--CCCCCceEEeCCCeeEEEeccc
Q 020021          250 ----S----------RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS--FDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       250 ----~----------~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                          +          ...+..++|+||+++  +|+.||.|++||+.+++.+..+..  |...+..++|+|++++|++++.
T Consensus       295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd  372 (383)
T 3ei3_B          295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMG  372 (383)
T ss_dssp             CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEET
T ss_pred             cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecC
Confidence                1          123334677788877  888999999999999999988876  4567788899999999999863


Q ss_pred             e-EEEeccc
Q 020021          314 E-LSFWIPD  321 (332)
Q Consensus       314 d-~~~w~~~  321 (332)
                      . +++|+++
T Consensus       373 ~~i~iw~~~  381 (383)
T 3ei3_B          373 FNILIWNRE  381 (383)
T ss_dssp             TEEEEEECC
T ss_pred             CcEEEEecC
Confidence            2 8888765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-38  Score=277.16  Aligned_cols=284  Identities=18%  Similarity=0.271  Sum_probs=235.4

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      ...++.++|.+|.+.|.+++| |++++|++|+.|++|++||+.+++....+..|...+..++|++++..+++++.   |+
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg   81 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK---DT   81 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET---TS
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC---CC
Confidence            356778899999999999999 99999999999999999999999999999999999999999999999998865   78


Q ss_pred             eeEEEEccCC---ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEc--CCCe
Q 020021          102 SLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYD--DQGL  174 (332)
Q Consensus       102 ~v~v~d~~~~---~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~--~~~~  174 (332)
                      .+++|++...   +.+..+.+|...|.++.|  +++.|++++.|+.|++||  .+.....+..+..  ....+.  ....
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK  157 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence            9999998654   567788999999999999  578999999999999999  4444544443332  223333  3456


Q ss_pred             EEEEEeCCEEEEEECccCCCCCeeEEEecC-CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021          175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (332)
Q Consensus       175 ~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (332)
                      +++++.++.|++||....      ...... +...+.+++|+|++. +++++.||.|++||+.+++.+..+.   .|...
T Consensus       158 l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~  227 (313)
T 3odt_A          158 FLTASADKTIKLWQNDKV------IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE---GHESF  227 (313)
T ss_dssp             EEEEETTSCEEEEETTEE------EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE---CCSSC
T ss_pred             EEEEECCCCEEEEecCce------EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh---cCCce
Confidence            666677899999994321      122223 566889999999999 8999999999999999999888776   45678


Q ss_pred             ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccccccc
Q 020021          254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKL  325 (332)
Q Consensus       254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~~  325 (332)
                      +..++|+|++ .|++++.||.|++||+.+++.+..+..|...+.+++|+|+++++ +++.|  +++|+....++
T Consensus       228 i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          228 VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEETTSCEEEEESCGGGC
T ss_pred             EEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeCCCcEEEEeCCCCce
Confidence            8999999999 58899999999999999999999999999999999999999855 45555  88998765443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-39  Score=293.69  Aligned_cols=281  Identities=15%  Similarity=0.191  Sum_probs=235.7

Q ss_pred             ccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEEc----CCCe------eeEEeee----------cccceeEEEEccCCC
Q 020021           31 RDYNGRISSMDFHKSSS-YLVTASDDESIRLYDV----TAAT------CLKTINS----------KKYGVDLVCFTSHPT   89 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~   89 (332)
                      ..|.++|.+++|+|+++ +|++|+.|++|++||+    .+++      ....+..          |...|..++|+|++.
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            45669999999999999 9999999999999999    8887      4444444          566899999999999


Q ss_pred             EEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC------
Q 020021           90 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG------  163 (332)
Q Consensus        90 ~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~------  163 (332)
                      .+++++.   |+.|++|| .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+....      
T Consensus       122 ~l~~~~~---dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          122 SIVTGVE---NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             EEEEEET---TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             EEEEEeC---CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence            9988865   78999999 6778889999999999999999999999999999999999999988776664332      


Q ss_pred             -----------ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021          164 -----------RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (332)
Q Consensus       164 -----------~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i  232 (332)
                                 .....+.+++.+++++.++.|++||++....  .  .....+...+..++|+|+++++++++.|+.|++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~--~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  273 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP--T--GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI  273 (425)
T ss_dssp             --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC--S--EEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce--e--eeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence                       2334556677888888899999999986432  2  223356678999999999999999999999999


Q ss_pred             EEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc
Q 020021          233 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       233 ~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      ||+.+++.+..+.   .+...+..++|+|++ ++++++.||.|++||+.+++.+..+..|...+.+++|+|++++|++++
T Consensus       274 ~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  349 (425)
T 1r5m_A          274 WHGGNGNSQNCFY---GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF  349 (425)
T ss_dssp             ECSSSBSCSEEEC---CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCccceEec---CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence            9999888776664   456788899999999 999999999999999999999999999999999999999999999998


Q ss_pred             ce--EEEeccccc
Q 020021          313 SE--LSFWIPDLS  323 (332)
Q Consensus       313 ~d--~~~w~~~~~  323 (332)
                      .|  +.+|+....
T Consensus       350 ~dg~i~i~~~~~~  362 (425)
T 1r5m_A          350 MDGQVNVYDLKKL  362 (425)
T ss_dssp             TTSCEEEEECHHH
T ss_pred             CCCeEEEEECCCC
Confidence            76  888887543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.7e-38  Score=285.12  Aligned_cols=245  Identities=20%  Similarity=0.261  Sum_probs=200.2

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEe----eecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI----NSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      .....|...|.+++|+|++ .|++|+.|++|+|||+.+++++..+    .+|...|..++|+|+++.+++++.   |++|
T Consensus        76 ~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~---d~~i  151 (344)
T 4gqb_B           76 SAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK---DICI  151 (344)
T ss_dssp             SEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCE
T ss_pred             eeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC---CCeE
Confidence            3345677889999999985 7889999999999999998876543    468889999999999999998864   8899


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEecC----ceeEEEcC-CCeEEE
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDD-QGLVFA  177 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~  177 (332)
                      ++||+++++++..+.+|.+.|++++|++++. .|+|++.|++|++||++++++...+....    .....+.+ ++.+++
T Consensus       152 ~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~  231 (344)
T 4gqb_B          152 KVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV  231 (344)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred             EEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence            9999999999999999999999999999875 78999999999999999988776553221    23455665 445554


Q ss_pred             -EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021          178 -VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (332)
Q Consensus       178 -~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  255 (332)
                       ++.|+.|++||++..+.    ...+.+|...|++++|+|+| ++|++++.|++|++||..+++++. +.   .|...|.
T Consensus       232 sg~~dg~v~~wd~~~~~~----~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~---~H~~~V~  303 (344)
T 4gqb_B          232 FGDENGTVSLVDTKSTSC----VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ---AHRDFVR  303 (344)
T ss_dssp             EEETTSEEEEEESCC--C----CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC---CCSSCEE
T ss_pred             EeccCCcEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec---CCCCCEE
Confidence             55689999999986432    23445677889999999998 578999999999999999887654 22   5778899


Q ss_pred             EEEECCCCC-EEEEEcCCCcEEEEECCCCc
Q 020021          256 EASFSPEGM-FVISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       256 ~v~~spdg~-~l~sgs~Dg~i~vWd~~~~~  284 (332)
                      +++|+|+++ +|+|||.||+|++|++.+..
T Consensus       304 ~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          304 DATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            999999986 57799999999999998754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.9e-38  Score=281.39  Aligned_cols=255  Identities=21%  Similarity=0.301  Sum_probs=212.3

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC----eeeEEeeecccceeEEEEccCCC
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHPT   89 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~   89 (332)
                      +.+|+.  ...+....+..|...|.+++|+|++++|++|+.|+++++||+.+.    .....+.+|...+..+.|.+++.
T Consensus        79 v~iWd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  156 (340)
T 1got_B           79 LIIWDS--YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ  156 (340)
T ss_dssp             EEEEET--TTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE
T ss_pred             EEEEEC--CCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc
Confidence            455542  334566788999999999999999999999999999999999865    34567788888899999988765


Q ss_pred             EEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeE
Q 020021           90 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAA  167 (332)
Q Consensus        90 ~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~  167 (332)
                       +++++.   |++|++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|++|++||++++.+...+..+.  ....
T Consensus       157 -l~s~s~---d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v  232 (340)
T 1got_B          157 -IVTSSG---DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI  232 (340)
T ss_dssp             -EEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred             -EEEEEC---CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEE
Confidence             666543   8899999999999999999999999999999999999999999999999999988877775433  3456


Q ss_pred             EEcCCCeEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021          168 AYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       168 ~~~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                      .+++++.+++ ++.|+.|++||++...  ....+........+.+++|+|+|+++++++.|+.|++||..+++.+..+. 
T Consensus       233 ~~~p~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-  309 (340)
T 1got_B          233 CFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-  309 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred             EEcCCCCEEEEEcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-
Confidence            7777775554 5568999999997642  12222222333468999999999999999999999999999988887776 


Q ss_pred             cCCCCCcceEEEECCCCCEEEEEcCCCcEEEEE
Q 020021          247 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS  279 (332)
Q Consensus       247 ~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd  279 (332)
                        .|...+.+++|+|||++|||||.||+|+|||
T Consensus       310 --~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          310 --GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence              5678899999999999999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-38  Score=286.04  Aligned_cols=290  Identities=15%  Similarity=0.206  Sum_probs=232.6

Q ss_pred             HHHHhcccceeEeccCCCcEEEEEECCC---CCEEEEEeCCCcEEEEEcCC-Ceee-EEeeecccceeEEEEccCCCEEE
Q 020021           18 EEILQSMEVGMSFRDYNGRISSMDFHKS---SSYLVTASDDESIRLYDVTA-ATCL-KTINSKKYGVDLVCFTSHPTTVI   92 (332)
Q Consensus        18 ~~~~~~~~~~~~l~~h~~~I~~i~~s~d---g~~l~tgs~D~tv~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~   92 (332)
                      ++-....+..+.+.+|.+.|++++|+|+   |++|++|+.|++|+|||+.+ +..+ ..+..|...|..++|++++..++
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence            3344556677789999999999999999   59999999999999999997 5555 77888999999999999999999


Q ss_pred             EecCCCCCceeEEEEccCCceEEEeecccccEEEEEe--cCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEc
Q 020021           93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL--CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD  170 (332)
Q Consensus        93 ~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~--~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~  170 (332)
                      +++.   |+.|++||+.+++.+. +.+|...|.+++|  ++++++|++++.||+|++||++++++...+..+........
T Consensus       103 s~~~---dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  178 (368)
T 3mmy_A          103 TASC---DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADV  178 (368)
T ss_dssp             EEET---TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEE
T ss_pred             EEcC---CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEe
Confidence            8864   8899999999988665 6679999999999  88999999999999999999999887777765543333222


Q ss_pred             CCCeEEEEEeCCEEEEEECccCCCCCeeEEEe-cCCCCCceeEEEcCCCCE----EEEEcCCCeEEEEEccCC---eEeE
Q 020021          171 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSNDGRL----MLLTTMEGHIHVLDSFRG---TLLS  242 (332)
Q Consensus       171 ~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~v~~s~dg~~----l~~~~~dg~i~i~d~~~~---~~~~  242 (332)
                      ....++.+..++.+++|+++....   ..... .........+++.+++..    +++++.||.|++||+...   ..+.
T Consensus       179 ~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  255 (368)
T 3mmy_A          179 IYPMAVVATAERGLIVYQLENQPS---EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF  255 (368)
T ss_dssp             ETTEEEEEEGGGCEEEEECSSSCE---EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred             cCCeeEEEeCCCcEEEEEeccccc---hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence            345667777789999999975421   11111 112234556666665544    999999999999999876   3344


Q ss_pred             EeeecCC---------CCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          243 TYNVKPV---------SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       243 ~~~~~~~---------~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      .+..+..         +...+.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~  335 (368)
T 3mmy_A          256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS  335 (368)
T ss_dssp             EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred             eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence            4432110         1116889999999999999999999999999999999999999999999999999999999987


Q ss_pred             e
Q 020021          314 E  314 (332)
Q Consensus       314 d  314 (332)
                      |
T Consensus       336 d  336 (368)
T 3mmy_A          336 Y  336 (368)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=286.45  Aligned_cols=287  Identities=15%  Similarity=0.220  Sum_probs=225.3

Q ss_pred             eeEeccCCCcEEEEEECCCCCEE-EEEeC---CCcEEEEEcCCCeeeEEee-ecccceeEEEEccC---CCEEEEecCCC
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYL-VTASD---DESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSH---PTTVIYSSKNG   98 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l-~tgs~---D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~~~~s~~g   98 (332)
                      ...+++|.+.|.+++|+|+++.+ ++|+.   |++|+|||+.+++...... .|...|..++|+++   +..+++++.  
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--   88 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF--   88 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET--
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC--
Confidence            45578999999999999999655 56666   9999999999988765543 67788999999998   577887764  


Q ss_pred             CCceeEEEEccCCc-eEEEeecccccEEEEE------ecCCCCeEEEeeCCCcEEEEeCCCce-EEEEEEecC------c
Q 020021           99 WDESLRLLSLHDNK-YLRYFKGHHDRVVSLS------LCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQG------R  164 (332)
Q Consensus        99 ~d~~v~v~d~~~~~-~~~~~~~h~~~V~~v~------~~~~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~~------~  164 (332)
                       |+.|++||+.+++ .+..+.+|...|.+++      |+|++++|++++.|++|++||++++. +...+....      .
T Consensus        89 -dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           89 -GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             -TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             -CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence             7899999999987 8889999999999995      46889999999999999999998876 444443211      1


Q ss_pred             eeEE----EcCCCeEEEE-EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC---CCCEEEEEcCCCeEEEEEcc
Q 020021          165 PAAA----YDDQGLVFAV-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN---DGRLMLLTTMEGHIHVLDSF  236 (332)
Q Consensus       165 ~~~~----~~~~~~~~~~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~---dg~~l~~~~~dg~i~i~d~~  236 (332)
                      ....    +++++.++++ +.++.|++||++..+.     .....+...+.+++|+|   ++.++++++.||.|++||+.
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  242 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR  242 (357)
T ss_dssp             EEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred             EEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence            1223    4456655554 4579999999986432     12223456899999999   99999999999999999998


Q ss_pred             CCeEeEEee--ecCCCCCcceEEEECCCCC-EEEEEcCCCcEEEEECCCC-------------------ceEEEecCCCC
Q 020021          237 RGTLLSTYN--VKPVSRNSTLEASFSPEGM-FVISGSGDGSVYAWSVRSG-------------------KEVASWMSFDT  294 (332)
Q Consensus       237 ~~~~~~~~~--~~~~~~~~~~~v~~spdg~-~l~sgs~Dg~i~vWd~~~~-------------------~~~~~~~~~~~  294 (332)
                      +++.+..+.  ....+...+..++|+|+++ +|++|+.||.|++||+.++                   +.+..+..|..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  322 (357)
T 3i2n_A          243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ  322 (357)
T ss_dssp             EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS
T ss_pred             CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC
Confidence            766544332  1124667889999999999 8999999999999999754                   35667788999


Q ss_pred             CCceEEeCCCeeEEE-eccce--EEEeccc
Q 020021          295 EPPVIKWTPGSLMFV-TGSSE--LSFWIPD  321 (332)
Q Consensus       295 ~v~~l~~sp~~~~l~-t~~~d--~~~w~~~  321 (332)
                      .|.+++|+|++++|+ +++.|  +++|+..
T Consensus       323 ~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          323 PISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             CeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence            999999999999887 78877  6666653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-39  Score=295.31  Aligned_cols=282  Identities=15%  Similarity=0.237  Sum_probs=231.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC----CeeeEEeeecccceeEEEEccC-CCEEEEecCCCCCceeEEE
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~s~~g~d~~v~v~  106 (332)
                      .|...|.+++|+|++++|++|+.|++|++||+.+    .+++..+..|...|..++|+|+ +..+++++.   |+.|++|
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iw  141 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN---NGEIFIW  141 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS---SSCEEBC
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC---CCeEEEE
Confidence            5899999999999999999999999999999987    4578888899999999999998 777777754   8899999


Q ss_pred             EccCCc------eEE---EeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEec--------CceeEE
Q 020021          107 SLHDNK------YLR---YFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--------GRPAAA  168 (332)
Q Consensus       107 d~~~~~------~~~---~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--------~~~~~~  168 (332)
                      |+.+++      ...   .+.+|...|.+++|+|+ +.+|++++.|+.|++||++++++...+...        ......
T Consensus       142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  221 (416)
T 2pm9_A          142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE  221 (416)
T ss_dssp             BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEE
T ss_pred             ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEE
Confidence            998876      322   34689999999999998 789999999999999999998887776543        134566


Q ss_pred             EcCCC--eEEEEEeCC---EEEEEECccCCCCCeeEEEec-CCCCCceeEEEcC-CCCEEEEEcCCCeEEEEEccCCeEe
Q 020021          169 YDDQG--LVFAVAFGG---YIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLL  241 (332)
Q Consensus       169 ~~~~~--~~~~~~~~~---~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~~~~  241 (332)
                      +++++  .+++++.++   .|++||++..... .  .... ++...+.+++|+| +++++++++.||.|++||+.+++.+
T Consensus       222 ~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-~--~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~  298 (416)
T 2pm9_A          222 WHPKNSTRVATATGSDNDPSILIWDLRNANTP-L--QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL  298 (416)
T ss_dssp             ECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-S--BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE
T ss_pred             ECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-c--EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc
Confidence            77765  455555566   9999999864321 1  1223 5667899999999 9999999999999999999999988


Q ss_pred             EEeeecCCCCCcceEEEECCCC-CEEEEEcCCCcEEEEECCCCceEEEec------------------------------
Q 020021          242 STYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVASWM------------------------------  290 (332)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~~~~~~~~------------------------------  290 (332)
                      ..+.   .|...+..++|+|++ ++|++++.||.|++||+.+.+......                              
T Consensus       299 ~~~~---~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (416)
T 2pm9_A          299 SQFP---ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFH  375 (416)
T ss_dssp             EEEE---CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSC
T ss_pred             eeec---CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccccc
Confidence            8776   456778899999999 899999999999999998765422111                              


Q ss_pred             -----CCCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          291 -----SFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       291 -----~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                           .|..++..++|+|||++|++++.|  +++|++..
T Consensus       376 ~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          376 LQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             CCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             ccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence                 156677899999999999999987  77787654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.4e-39  Score=286.78  Aligned_cols=249  Identities=14%  Similarity=0.181  Sum_probs=194.8

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEcc--CCCEEEEecCCCCCcee
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESL  103 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~~~~~s~~g~d~~v  103 (332)
                      ..+.+|+++|++++|+|+|++||||+.|++|+|||+.++.  ++.++.+|...|..++|++  ++..+++++.   |++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~---D~~v   83 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY---DRKV   83 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET---TSCE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC---CCEE
Confidence            3478999999999999999999999999999999998775  4678899999999999975  3677887764   8999


Q ss_pred             EEEEccCCc--eEEEeecccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEE
Q 020021          104 RLLSLHDNK--YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  179 (332)
Q Consensus       104 ~v~d~~~~~--~~~~~~~h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (332)
                      ++||+.+++  .+..+.+|...|++++|+|+  +.+|++++.|++|++||++.+.......                   
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~-------------------  144 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK-------------------  144 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC-------------------
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee-------------------
Confidence            999998874  56778899999999999997  7899999999999999987642110000                   


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-----------------CCEEEEEcCCCeEEEEEccCC---e
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-----------------GRLMLLTTMEGHIHVLDSFRG---T  239 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-----------------g~~l~~~~~dg~i~i~d~~~~---~  239 (332)
                                           ...+|...+.+++|+|+                 ++++++++.|+.|++||+..+   +
T Consensus       145 ---------------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~  203 (316)
T 3bg1_A          145 ---------------------INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK  203 (316)
T ss_dssp             ---------------------BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE
T ss_pred             ---------------------eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc
Confidence                                 00123334555566665                 578999999999999998754   2


Q ss_pred             EeEEeeecCCCCCcceEEEECCCC----CEEEEEcCCCcEEEEECCCCc----eEEEecCCCCCCceEEeCCCeeEEEec
Q 020021          240 LLSTYNVKPVSRNSTLEASFSPEG----MFVISGSGDGSVYAWSVRSGK----EVASWMSFDTEPPVIKWTPGSLMFVTG  311 (332)
Q Consensus       240 ~~~~~~~~~~~~~~~~~v~~spdg----~~l~sgs~Dg~i~vWd~~~~~----~~~~~~~~~~~v~~l~~sp~~~~l~t~  311 (332)
                      .+..+.   .|...+.+++|+|++    ++||+|+.||+|++|++.+..    ....+..|...|.+++|+|++++|+++
T Consensus       204 ~~~~l~---~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~  280 (316)
T 3bg1_A          204 EEQKLE---AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS  280 (316)
T ss_dssp             EEECCB---CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred             eeeecc---cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence            344443   567889999999987    899999999999999997621    123345688899999999999999999


Q ss_pred             cce--EEEecccc
Q 020021          312 SSE--LSFWIPDL  322 (332)
Q Consensus       312 ~~d--~~~w~~~~  322 (332)
                      +.|  +++|+...
T Consensus       281 ~~D~~v~lw~~~~  293 (316)
T 3bg1_A          281 GGDNKVTLWKESV  293 (316)
T ss_dssp             ESSSCEEEEEECT
T ss_pred             cCCCeEEEEEECC
Confidence            887  88888653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.6e-37  Score=273.69  Aligned_cols=277  Identities=11%  Similarity=0.192  Sum_probs=229.3

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee---EEee--ecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL---KTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      ..+|.++|.+++|+|++++|++++ |++|++||+.+++..   ..+.  .|...+..++|+|++..+++++.   |+.|+
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~  122 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE---ASTLS  122 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES---SSEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC---CCcEE
Confidence            458999999999999999999999 999999999876543   3333  57778999999999998888764   78999


Q ss_pred             EEEccCCc--eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCe-EEEEE
Q 020021          105 LLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGL-VFAVA  179 (332)
Q Consensus       105 v~d~~~~~--~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~  179 (332)
                      +||+.+++  ....+.+|...|.+++|+|++++|++++.|+.|++||+++++....+..+.  .....+++++. +++++
T Consensus       123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  202 (337)
T 1gxr_A          123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe
Confidence            99999877  567788999999999999999999999999999999999988777665432  33556777665 55555


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~  259 (332)
                      .++.|++||++..+.  ....   .+...+..++|+|+++++++++.++.|++||+.+++... +.   .+...+..++|
T Consensus       203 ~dg~i~~~d~~~~~~--~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~v~~~~~  273 (337)
T 1gxr_A          203 LDNTVRSWDLREGRQ--LQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH---LHESCVLSLKF  273 (337)
T ss_dssp             TTSEEEEEETTTTEE--EEEE---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC---CCSSCEEEEEE
T ss_pred             cCCcEEEEECCCCce--Eeee---cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec---CCccceeEEEE
Confidence            689999999976431  1112   234578999999999999999999999999998877543 22   45678899999


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          260 SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       260 spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      +|++++|++++.||.|++||+.+++.+.. ..|...+.+++|+|++++|++++.|  +.+|+.
T Consensus       274 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            99999999999999999999999887744 4577889999999999999999887  777764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.2e-38  Score=293.27  Aligned_cols=299  Identities=14%  Similarity=0.171  Sum_probs=221.7

Q ss_pred             hcccceeEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeee--EEeeecccceeEEEEcc-CCCEEEEecCC
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDLVCFTS-HPTTVIYSSKN   97 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~~~~~s~~   97 (332)
                      ..+++.....+|...|++|+|+| ++++||+|+.||+|+|||+.+++..  ..+.+|...|..++|+| ++..+++++  
T Consensus       107 ~~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s--  184 (435)
T 4e54_B          107 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS--  184 (435)
T ss_dssp             TTTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC--
T ss_pred             cceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe--
Confidence            34566778889999999999999 4679999999999999999877644  44567888999999998 566777765  


Q ss_pred             CCCceeEEEEccCCceEEEeec--ccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcCCC
Q 020021           98 GWDESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQG  173 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~--h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~  173 (332)
                       .|++|++||++++........  +...+.+++|+|++++|++|+.||+|++||++... ...+..+  ......+++.+
T Consensus       185 -~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          185 -MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             -SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEECTTC
T ss_pred             -CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEEecccceEEeeeecCCC
Confidence             489999999987654333333  33457889999999999999999999999987543 3333322  23345666654


Q ss_pred             -eEE-EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC-
Q 020021          174 -LVF-AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS-  250 (332)
Q Consensus       174 -~~~-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-  250 (332)
                       .++ +++.|+.|++||++...... ......+|...|++++|+|||++|++++.||.|++||+.++.....+..+... 
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~  341 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVRGKA-SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH  341 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCCSSS-CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred             ceEEEEecCcceeeEEecccccccc-eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence             344 55678999999998654321 11222356678999999999999999999999999999988766555432111 


Q ss_pred             --CCcceEEEECCCCCEEEEEc------------CCCcEEEEECCCCceEEEec-CCCCCCceE-EeCCCeeEEEeccce
Q 020021          251 --RNSTLEASFSPEGMFVISGS------------GDGSVYAWSVRSGKEVASWM-SFDTEPPVI-KWTPGSLMFVTGSSE  314 (332)
Q Consensus       251 --~~~~~~v~~spdg~~l~sgs------------~Dg~i~vWd~~~~~~~~~~~-~~~~~v~~l-~~sp~~~~l~t~~~d  314 (332)
                        ...+....|+|++.++++++            .+++|++||..+++.+..+. .|...|.++ +|+|++++|++|+++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~  421 (435)
T 4e54_B          342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGY  421 (435)
T ss_dssp             CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSS
T ss_pred             cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCC
Confidence              11233456777777666654            34689999999999887764 677888887 699999999998765


Q ss_pred             -EEEeccccccc
Q 020021          315 -LSFWIPDLSKL  325 (332)
Q Consensus       315 -~~~w~~~~~~~  325 (332)
                       +++|+++..+.
T Consensus       422 ~i~iW~~~~gk~  433 (435)
T 4e54_B          422 HILIWSQQEART  433 (435)
T ss_dssp             EEEECCCC----
T ss_pred             cEEEEECCcCee
Confidence             88898876554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.9e-37  Score=304.06  Aligned_cols=288  Identities=17%  Similarity=0.242  Sum_probs=245.8

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++..++|.+|.+.|.+++|+|++++|++++.|++|+|||+.+++++..+..|...|..++|+|++..+++++.   |+.|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i   79 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD---DFRI   79 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET---TSEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC---CCeE
Confidence            5667889999999999999999999999999999999999999999999999999999999999999998865   7899


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCc-eEEEEEEecC--ceeEEEcC-CC-eEEEE
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQG--RPAAAYDD-QG-LVFAV  178 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~~~--~~~~~~~~-~~-~~~~~  178 (332)
                      ++||+.+++.+..+.+|.+.|++++|+|++++|++++.||+|++||++++ .+...+..+.  .....+++ ++ .++++
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999876 4444544332  34566776 55 45555


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC--CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~--dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  256 (332)
                      +.|+.|++||++....  .. .....+...+..++|+|  ++.++++++.||.|++||..+++.+..+.   .|...+..
T Consensus       160 ~~dg~v~vwd~~~~~~--~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~  233 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTP--NF-TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSF  233 (814)
T ss_dssp             ETTSEEEEEETTCSSC--SE-EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE---CCSSCEEE
T ss_pred             eCCCeEEEEECCCCcc--ee-EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc---CCCCCEEE
Confidence            5689999999875432  11 12223346789999999  99999999999999999999999887776   45678889


Q ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCee--EEEeccce-EEEecc
Q 020021          257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSSE-LSFWIP  320 (332)
Q Consensus       257 v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~t~~~d-~~~w~~  320 (332)
                      ++|+|++++|++++.||+|++||+.+++.+..+..|...+.+++|+|++.  ++++++.+ +.+|..
T Consensus       234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (814)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence            99999999999999999999999999999999999999999999999986  45555543 666654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.5e-37  Score=279.35  Aligned_cols=284  Identities=9%  Similarity=0.056  Sum_probs=215.8

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCC-------cEEEEEcCCCeee----------EEeeecccceeEEEEccCCCEEEEecC
Q 020021           34 NGRISSMDFHKSSSYLVTASDDE-------SIRLYDVTAATCL----------KTINSKKYGVDLVCFTSHPTTVIYSSK   96 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~-------tv~iwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~s~   96 (332)
                      ..||++++|+||+++|++||.|.       .|++|++......          ..+..+...+.++  ++++..++++..
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~--~~~~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAI--DASKGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEE--EEETTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEE--EeCCCEEEEEEC
Confidence            46899999999999999998765       4999999765321          1234455556554  455666666543


Q ss_pred             C--------CCCceeEEEEccCCceEE----E-----eecccccEEEEEecCCCCeEE--EeeCCCcEEEEeCCCceEEE
Q 020021           97 N--------GWDESLRLLSLHDNKYLR----Y-----FKGHHDRVVSLSLCSSKDCFI--SGSLDRTVLLWDQRAEKCQG  157 (332)
Q Consensus        97 ~--------g~d~~v~v~d~~~~~~~~----~-----~~~h~~~V~~v~~~~~~~~l~--s~s~Dg~i~iWd~~~~~~~~  157 (332)
                      .        +.|+++|+|++.......    .     ...+...+..++|+|||++++  |++.|++|++||++++++..
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence            2        347889999987654221    1     123556799999999999876  55689999999999998887


Q ss_pred             EEEecC-ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC----eEEE
Q 020021          158 LLRVQG-RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG----HIHV  232 (332)
Q Consensus       158 ~~~~~~-~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg----~i~i  232 (332)
                      .+.... .....+++++.+++.+.++.+++|+.....  ........++...+.+++|+|||+++++++.++    .++.
T Consensus       172 ~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~  249 (365)
T 4h5i_A          172 EIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGS--CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK  249 (365)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCC--EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred             EeCCCCceEEEEEccCCceEEeccceeEEEEEeccCc--ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence            775433 346788999999888888888888876432  111222334556789999999999999998887    6888


Q ss_pred             EEccCCeEeEE-eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEe
Q 020021          233 LDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVT  310 (332)
Q Consensus       233 ~d~~~~~~~~~-~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t  310 (332)
                      ||...+..... ......+...+.+++|||||++||+|+.|++|+|||+.+++++..+ .+|..+|++|+||||+++|+|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS  329 (365)
T 4h5i_A          250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS  329 (365)
T ss_dssp             EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred             cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence            99876654211 1111245678899999999999999999999999999999998875 689999999999999999999


Q ss_pred             ccce--EEEeccc
Q 020021          311 GSSE--LSFWIPD  321 (332)
Q Consensus       311 ~~~d--~~~w~~~  321 (332)
                      +|.|  +++|+..
T Consensus       330 ~S~D~tvrvw~ip  342 (365)
T 4h5i_A          330 VSAANTIHIIKLP  342 (365)
T ss_dssp             EETTSEEEEEECC
T ss_pred             EeCCCeEEEEEcC
Confidence            9988  8888753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.9e-37  Score=286.33  Aligned_cols=284  Identities=17%  Similarity=0.277  Sum_probs=216.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-----------eeEEeeecc------------cceeEEEEccCC
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----------CLKTINSKK------------YGVDLVCFTSHP   88 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~   88 (332)
                      .|.++|++++|+|+|++||+|+.|++|+|||+.+++           +...+.+|.            ..|..++|++++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            468999999999999999999999999999999877           577888887            779999999998


Q ss_pred             --CEEEEecCCCCCceeEEEEccCCceE---------------------------------------EE-eecccccEEE
Q 020021           89 --TTVIYSSKNGWDESLRLLSLHDNKYL---------------------------------------RY-FKGHHDRVVS  126 (332)
Q Consensus        89 --~~~~~~s~~g~d~~v~v~d~~~~~~~---------------------------------------~~-~~~h~~~V~~  126 (332)
                        ..+++++.   |++|++||+.++...                                       +. +.+|...|.+
T Consensus       106 ~~~~l~s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          106 NAAQFLLSTN---DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             SSSEEEEEEC---SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             CcceEEEeCC---CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence              67777754   889999999764432                                       12 4689999999


Q ss_pred             EEecCCCCeEEEeeCCCcEEEEeCCC-ceEEEEEE-----e----cCceeEEEcCCC--eEEEEEeCCEEEEEECccCCC
Q 020021          127 LSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLLR-----V----QGRPAAAYDDQG--LVFAVAFGGYIRMFDARKYEK  194 (332)
Q Consensus       127 v~~~~~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~~-----~----~~~~~~~~~~~~--~~~~~~~~~~i~vwd~~~~~~  194 (332)
                      ++|+|++++|+++ .|++|++||++. +++...+.     .    .......+++++  .+++++.|+.|++||++....
T Consensus       183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            9999999999998 799999999984 44443321     1    113456777765  455566789999999987543


Q ss_pred             CCeeEEEecCCCC------------CceeEEEcCCCCEEEEEcCCCeEEEEEccC-CeEeEEeeecCCCCC---------
Q 020021          195 GPFDIFSVGGDIS------------DANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRN---------  252 (332)
Q Consensus       195 ~~~~~~~~~~~~~------------~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~---------  252 (332)
                      .........++..            .+.+++|+|+|+++++++. +.|++||+.+ ++.+..+..+.....         
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred             ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence            1111122233333            7899999999999999999 9999999987 777766653321111         


Q ss_pred             c---ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe--------------------------------cCCCCCCc
Q 020021          253 S---TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW--------------------------------MSFDTEPP  297 (332)
Q Consensus       253 ~---~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~--------------------------------~~~~~~v~  297 (332)
                      .   +..++|+|++++|++|+.||.|++||+.+++.+...                                ..+...+.
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  420 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL  420 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred             ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence            1   224899999999999999999999999988765311                                13456788


Q ss_pred             eEEeCCCeeEEEeccce-EEEecc
Q 020021          298 VIKWTPGSLMFVTGSSE-LSFWIP  320 (332)
Q Consensus       298 ~l~~sp~~~~l~t~~~d-~~~w~~  320 (332)
                      +++|+|++.+|++++.+ +.+|.-
T Consensus       421 ~~~~~p~~~~la~~~~~~~~~~~~  444 (447)
T 3dw8_B          421 HTAWHPKENIIAVATTNNLYIFQD  444 (447)
T ss_dssp             EEEECSSSSEEEEECSSCEEEEEC
T ss_pred             EEEECCCCCEEEEEecceeeeecc
Confidence            99999999999998776 777753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.3e-37  Score=277.72  Aligned_cols=284  Identities=13%  Similarity=0.219  Sum_probs=226.2

Q ss_pred             EeccCCCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCeeeEEeeec-----ccceeEEEEccC----CCEEEEec
Q 020021           29 SFRDYNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATCLKTINSK-----KYGVDLVCFTSH----PTTVIYSS   95 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~d----g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~----~~~~~~~s   95 (332)
                      .+.+|+++|++++|+|+    ..++++++.|+.|++||+.+++.+..+..+     ...+..++|+++    +..+++++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999984    456777777779999999988887777654     356899999998    45677665


Q ss_pred             CCCCCceeEEEEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEE---ec--CceeEEE
Q 020021           96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQ--GRPAAAY  169 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~~--~~~~~~~  169 (332)
                      .   |+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||+|++||++++++...+.   .+  ......+
T Consensus        93 ~---dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A           93 S---RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             T---TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred             C---CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence            4   88999999999999999999999999999999 89999999999999999999988777662   22  2345667


Q ss_pred             cCCCe-EEEEEeCCEEEEEECccCCCC------------------------CeeEEEecCCCCCceeEEEcCCCCEEEEE
Q 020021          170 DDQGL-VFAVAFGGYIRMFDARKYEKG------------------------PFDIFSVGGDISDANVVKFSNDGRLMLLT  224 (332)
Q Consensus       170 ~~~~~-~~~~~~~~~i~vwd~~~~~~~------------------------~~~~~~~~~~~~~v~~v~~s~dg~~l~~~  224 (332)
                      ++++. +++++.|+.|++||++..+..                        ........++...+.+++|+  +++++++
T Consensus       170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~  247 (366)
T 3k26_A          170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK  247 (366)
T ss_dssp             CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred             CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence            77665 555556899999998753210                        00011223366789999998  7899999


Q ss_pred             cCCCeEEEEEccCCeE--------------eEEeeecCCCCCcceEEEECCC--CCEEEEEcCCCcEEEEECCCCce---
Q 020021          225 TMEGHIHVLDSFRGTL--------------LSTYNVKPVSRNSTLEASFSPE--GMFVISGSGDGSVYAWSVRSGKE---  285 (332)
Q Consensus       225 ~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~~v~~spd--g~~l~sgs~Dg~i~vWd~~~~~~---  285 (332)
                      +.|+.|++||+.++..              +..+.   .+...+..++|+|+  +++|++|+.||.|++||+.+++.   
T Consensus       248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  324 (366)
T 3k26_A          248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD---YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA  324 (366)
T ss_dssp             CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE---CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred             ecCCEEEEEeCCCccccccccccCCcchheecccc---ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence            9999999999887643              44443   45567888999999  99999999999999999998764   


Q ss_pred             -EEEecCC--CCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          286 -VASWMSF--DTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       286 -~~~~~~~--~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                       +..+..|  ...|.+++|+|++++|++++.|  +++|+.
T Consensus       325 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          325 KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence             3467777  6899999999999999999988  666654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3e-37  Score=284.14  Aligned_cols=283  Identities=13%  Similarity=0.140  Sum_probs=225.9

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      .+..| ..+....|+|++++|++|+.|++|++||+.++++...+..|...|..++|+|++..+++++.   |++|++||+
T Consensus        93 ~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~  168 (420)
T 3vl1_A           93 MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ---DMQLKIWSV  168 (420)
T ss_dssp             TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEET---TSEEEEEET
T ss_pred             EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeC---CCeEEEEeC
Confidence            34455 44555578999999999999999999999999999888899999999999999998888764   889999999


Q ss_pred             cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-------------------------
Q 020021          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-------------------------  163 (332)
Q Consensus       109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-------------------------  163 (332)
                      .+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+....                         
T Consensus       169 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             TTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             CCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence            9999999999999999999999999999999999999999999998877765321                         


Q ss_pred             -ceeEEEcCCCeEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccCCeE
Q 020021          164 -RPAAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTL  240 (332)
Q Consensus       164 -~~~~~~~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~~  240 (332)
                       .....+++++.+++ ++.++.|++||++...   ........+...+.+++|+|+++ ++++++.||.|++||+.+++.
T Consensus       249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE---QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             CCCTTCSSCTTEEEEEEETTSCEEEEETTTCC---EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             cccceEEcCCCCEEEEEcCCCeEEEEECCCCc---eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence             01123346665555 4568999999997643   11222234567899999999999 999999999999999988754


Q ss_pred             -eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc---------eEEEecCCCCCCceEEeCCCee----
Q 020021          241 -LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK---------EVASWMSFDTEPPVIKWTPGSL----  306 (332)
Q Consensus       241 -~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~---------~~~~~~~~~~~v~~l~~sp~~~----  306 (332)
                       +..+..  .+...+..+ ++|++++|++++.||+|++|++.+..         ....+..|...+.+++|+|++.    
T Consensus       326 ~~~~~~~--~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~  402 (420)
T 3vl1_A          326 PVGEFLI--NEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGE  402 (420)
T ss_dssp             CSEEEEE--STTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCE
T ss_pred             chhhhhc--cCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcce
Confidence             555543  244555555 55788999999999999999997732         2234567888999999999988    


Q ss_pred             EEEeccce-EEEeccc
Q 020021          307 MFVTGSSE-LSFWIPD  321 (332)
Q Consensus       307 ~l~t~~~d-~~~w~~~  321 (332)
                      ++++|+.+ +.+|..+
T Consensus       403 l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          403 VLEVGKNNFCALYNLS  418 (420)
T ss_dssp             EEEEETTTEEEEEESC
T ss_pred             EEEEcCCceEEEEecc
Confidence            55666554 8888764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.4e-37  Score=294.33  Aligned_cols=300  Identities=16%  Similarity=0.191  Sum_probs=240.9

Q ss_pred             ceeEecHHHHhcccceeEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeeccc---ceeEEEEccC
Q 020021           12 VSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKY---GVDLVCFTSH   87 (332)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~   87 (332)
                      ..+.+++    ..+....+.+|.+.|.+++|+|+++ ++++++.|++|++||+.+++++..+..|..   .+..++|+|+
T Consensus       142 ~~v~~~d----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  217 (615)
T 1pgu_A          142 GVFISWD----SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD  217 (615)
T ss_dssp             EEEEETT----TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred             cEEEEEE----CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCC
Confidence            5666666    3456778999999999999999998 899999999999999999999999999988   8999999999


Q ss_pred             -CCEEEEecCCCCCceeEEEEccCCceEEEe-e---cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec
Q 020021           88 -PTTVIYSSKNGWDESLRLLSLHDNKYLRYF-K---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ  162 (332)
Q Consensus        88 -~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~-~---~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  162 (332)
                       +..+++++.   |+.|++||+.+++.+..+ .   +|...|.+++|+ ++++|++++.|+.|++||++++++...+..+
T Consensus       218 ~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          218 SGEFVITVGS---DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             TCCEEEEEET---TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CCCEEEEEeC---CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence             888888764   789999999999999998 6   899999999999 9999999999999999999988766555433


Q ss_pred             C------ceeEEEc------------------------------------------------------------------
Q 020021          163 G------RPAAAYD------------------------------------------------------------------  170 (332)
Q Consensus       163 ~------~~~~~~~------------------------------------------------------------------  170 (332)
                      .      .....+.                                                                  
T Consensus       294 ~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~  373 (615)
T 1pgu_A          294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSN  373 (615)
T ss_dssp             TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCS
T ss_pred             CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccC
Confidence            1      0001111                                                                  


Q ss_pred             --------CCCeEEEEEeCCEEEEEECccCC-------------------------------------------------
Q 020021          171 --------DQGLVFAVAFGGYIRMFDARKYE-------------------------------------------------  193 (332)
Q Consensus       171 --------~~~~~~~~~~~~~i~vwd~~~~~-------------------------------------------------  193 (332)
                              +...+++++.++.+++||++...                                                 
T Consensus       374 ~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (615)
T 1pgu_A          374 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS  453 (615)
T ss_dssp             CEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             ceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence                    12233333344444444433210                                                 


Q ss_pred             ------------CCCeeE----------EEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC
Q 020021          194 ------------KGPFDI----------FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  251 (332)
Q Consensus       194 ------------~~~~~~----------~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  251 (332)
                                  .+.+.+          ....++...+.+++|+|+|+++++++.||.|++||+.+++.+..+..  .|.
T Consensus       454 ~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~  531 (615)
T 1pgu_A          454 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA--FRT  531 (615)
T ss_dssp             ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC--CCS
T ss_pred             EcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec--CCC
Confidence                        011111          22234556789999999999999999999999999999998776542  267


Q ss_pred             CcceEEEECC----------CCCEEEEEcCCCcEEEEECCCC-ceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEe
Q 020021          252 NSTLEASFSP----------EGMFVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW  318 (332)
Q Consensus       252 ~~~~~v~~sp----------dg~~l~sgs~Dg~i~vWd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w  318 (332)
                      ..+.+++|+|          ++++||+|+.||+|++||+.++ +.+..+..|...|++++|+|+++ |++++.|  +++|
T Consensus       532 ~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw  610 (615)
T 1pgu_A          532 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW  610 (615)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred             CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEE
Confidence            8899999999          9999999999999999999987 77888999999999999999999 9999887  8888


Q ss_pred             cccc
Q 020021          319 IPDL  322 (332)
Q Consensus       319 ~~~~  322 (332)
                      +.+.
T Consensus       611 ~~~~  614 (615)
T 1pgu_A          611 NVVL  614 (615)
T ss_dssp             EEC-
T ss_pred             eeec
Confidence            7654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.5e-37  Score=272.02  Aligned_cols=249  Identities=17%  Similarity=0.279  Sum_probs=205.7

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      ...+.|++|...|.+++|+|++++|+||+.|++|+|||+.++++++.+.+|...|..++|++++..+++++.   |++|+
T Consensus        56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---D~~i~  132 (319)
T 3frx_A           56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR---DKTIK  132 (319)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET---TSCEE
T ss_pred             ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC---CCeEE
Confidence            346789999999999999999999999999999999999999999999999999999999999999988864   88999


Q ss_pred             EEEccCCceEEEeecccccEEEEEecCC------CCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEE
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSS------KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVF  176 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~------~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~  176 (332)
                      +||+. ++++..+.+|...|.++.|+|.      +..+++++.|++|++||+++.++...+..+.  .....+++++.++
T Consensus       133 vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l  211 (319)
T 3frx_A          133 VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI  211 (319)
T ss_dssp             EEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEE
T ss_pred             EEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEE
Confidence            99996 4678889999999999999985      4489999999999999999887766654432  3456777877655


Q ss_pred             E-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec-----CCC
Q 020021          177 A-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-----PVS  250 (332)
Q Consensus       177 ~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~  250 (332)
                      + ++.|+.|++||++..+    ....+.. ...+.+++|+|++.++++++.+ .+++|++..+..+..+...     ..+
T Consensus       212 ~s~~~dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~  285 (319)
T 3frx_A          212 ASAGKDGEIMLWNLAAKK----AMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAA  285 (319)
T ss_dssp             EEEETTCEEEEEETTTTE----EEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGG
T ss_pred             EEEeCCCeEEEEECCCCc----EEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCc
Confidence            4 5568999999997642    1222222 3578999999999998887755 5999999887766655422     112


Q ss_pred             CCcceEEEECCCCCEEEEEcCCCcEEEEECCCC
Q 020021          251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~  283 (332)
                      ...+.+++|+|||++|++|+.||+|+|||+.++
T Consensus       286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            456778999999999999999999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.2e-37  Score=278.08  Aligned_cols=286  Identities=14%  Similarity=0.154  Sum_probs=231.1

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      .+..|.++|.+++|+|++++|++++.|++|++||+.+++  ++..+..|...|..++|++++..+++++.   |+.|++|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~i~vw   79 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT---DRNAYVW   79 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET---TSCEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC---CCeEEEE
Confidence            356799999999999999999999999999999999987  88899999999999999999999988764   7899999


Q ss_pred             EccCCceEE--EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceE---EEEEEe---cCceeEEEcCCCeEEE-
Q 020021          107 SLHDNKYLR--YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC---QGLLRV---QGRPAAAYDDQGLVFA-  177 (332)
Q Consensus       107 d~~~~~~~~--~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~-  177 (332)
                      |+.+++...  .+.+|...|.+++|+|++++|++++.|+.|++||++.+..   ...+..   .......+++++.+++ 
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence            999887544  3477999999999999999999999999999999887652   222211   1234566777765554 


Q ss_pred             EEeCCEEEEEECccCC--------------CCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE
Q 020021          178 VAFGGYIRMFDARKYE--------------KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST  243 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~--------------~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~  243 (332)
                      ++.++.|++||++...              ..........++...+.+++|+|+++++++++.|+.|++||+.+++.+..
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  239 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT  239 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence            5568999999975211              01112334446667899999999999999999999999999999998887


Q ss_pred             eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC--Cce--------------------------------E---
Q 020021          244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS--GKE--------------------------------V---  286 (332)
Q Consensus       244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~--~~~--------------------------------~---  286 (332)
                      +.   .+...+..++|+|++++|++| .|+.|++|++.+  ++.                                .   
T Consensus       240 ~~---~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (372)
T 1k8k_C          240 LA---SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA  315 (372)
T ss_dssp             EE---CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred             Ec---cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCc
Confidence            76   455678899999999999988 899999999977  421                                0   


Q ss_pred             ---EEe-cCCCCCCceEEeC-CCe---eEEEeccce--EEEeccc
Q 020021          287 ---ASW-MSFDTEPPVIKWT-PGS---LMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       287 ---~~~-~~~~~~v~~l~~s-p~~---~~l~t~~~d--~~~w~~~  321 (332)
                         ..+ ..|...|++++|+ +++   .+|+|++.|  +++|+..
T Consensus       316 ~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          316 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             ---CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             cccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence               222 4899999999966 676   899999988  7777653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.7e-36  Score=311.48  Aligned_cols=295  Identities=14%  Similarity=0.231  Sum_probs=240.5

Q ss_pred             ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      ....+.+|.+.|++++|+|+|++|++|+.|++|+|||+.+++++.++.+|...|..++|+|++..+++++.   |++|++
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~v~v  683 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA---DKKVKI  683 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEE
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC---CCeEEE
Confidence            34568899999999999999999999999999999999999999999999999999999999999988864   889999


Q ss_pred             EEccCCceEEEeecccccEEEEEecC--CCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCe-EEEEEe
Q 020021          106 LSLHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGL-VFAVAF  180 (332)
Q Consensus       106 ~d~~~~~~~~~~~~h~~~V~~v~~~~--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~  180 (332)
                      ||+.+++.+..+.+|...|.+++|+|  ++..+++++.|++|++||++++++...+..+.  .....+++++. +++++.
T Consensus       684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  763 (1249)
T 3sfz_A          684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA  763 (1249)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred             EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence            99999999999999999999999999  45589999999999999999998877765433  34566777665 555667


Q ss_pred             CCEEEEEECccCCCC---------------------------------------------------CeeEEEecCCCCCc
Q 020021          181 GGYIRMFDARKYEKG---------------------------------------------------PFDIFSVGGDISDA  209 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~---------------------------------------------------~~~~~~~~~~~~~v  209 (332)
                      |+.|++||++.....                                                   ........++...+
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI  843 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence            899999998653110                                                   00000112556788


Q ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC---------
Q 020021          210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV---------  280 (332)
Q Consensus       210 ~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~---------  280 (332)
                      .+++|+|+++++++++.+|.|++||..++..+..+.   .|...+..++|+|+|++|++++.||+|++||+         
T Consensus       844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~  920 (1249)
T 3sfz_A          844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR---GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI  920 (1249)
T ss_dssp             CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC---CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee
Confidence            999999999999999999999999999988877665   45567777788888887777777777777764         


Q ss_pred             ----------------------------------------------------------------------CCCceEEEec
Q 020021          281 ----------------------------------------------------------------------RSGKEVASWM  290 (332)
Q Consensus       281 ----------------------------------------------------------------------~~~~~~~~~~  290 (332)
                                                                                            .+++.+..+.
T Consensus       921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A          921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp             SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred             cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence                                                                                  3334445556


Q ss_pred             CCCCCCceEEeCCCeeEEEeccce--EEEecccccccc
Q 020021          291 SFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLG  326 (332)
Q Consensus       291 ~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~~~  326 (332)
                      .|...|.+++|+|+++++++++.|  +++|+.....+.
T Consensus      1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A         1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp             CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence            788899999999999999998877  888887654443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-36  Score=268.97  Aligned_cols=250  Identities=14%  Similarity=0.129  Sum_probs=211.8

Q ss_pred             eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEE
Q 020021           67 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL  146 (332)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~  146 (332)
                      +..+++.+|...|..++|+|+++.+++++.   |++|++||+++++.+..+.+|..+|.++.|+|++++|++|+.|++|+
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~---dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLY---SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEET---TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcC---CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence            456778899999999999999999998864   88999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCceEEEEEEecC--ceeEEEcCCCe-EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC-CCCEEE
Q 020021          147 LWDQRAEKCQGLLRVQG--RPAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLML  222 (332)
Q Consensus       147 iWd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~  222 (332)
                      +||++++++...+..+.  .....+++++. +++++.|++|++||++...   .......+|...+.+++|+| ++.+++
T Consensus        81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---EEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---chhhhhcccCCcEEEEEECCCCCCEEE
Confidence            99999998877776543  34567777665 5556678999999987532   22234557778899999999 679999


Q ss_pred             EEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC--CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEE
Q 020021          223 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP--EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK  300 (332)
Q Consensus       223 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp--dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~  300 (332)
                      +++.|++|++||+.++.....+.  ..+...+..++|+|  ++++|++|+.|++|++||+.+++++..+..|...|.+++
T Consensus       158 sgs~D~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~  235 (304)
T 2ynn_A          158 SGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV  235 (304)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEE--CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEeCCCeEEEEECCCCCccceec--cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence            99999999999998776554443  23445677788876  788999999999999999999999999999999999999


Q ss_pred             eCCCeeEEEeccce--EEEecccccc
Q 020021          301 WTPGSLMFVTGSSE--LSFWIPDLSK  324 (332)
Q Consensus       301 ~sp~~~~l~t~~~d--~~~w~~~~~~  324 (332)
                      |+|++.+|++++.|  +++|+....+
T Consensus       236 ~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          236 FHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            99999999999987  8899875533

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.5e-37  Score=278.11  Aligned_cols=280  Identities=13%  Similarity=0.132  Sum_probs=228.9

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---eeEEeeecccceeEEEEccCCC-EEEEecCCCCCce
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDES  102 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~  102 (332)
                      .....+|.+.|++++|+|++++|++++.|++|+|||+.+++   ....+..|...|..++|++++. .+++++.   |+.
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~   80 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV---QGE   80 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET---TSC
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcC---CCe
Confidence            33456899999999999999999999999999999998776   3455567888999999999999 8888764   789


Q ss_pred             eEEEEc-cCCceEEEeec--ccccEEEEEecCCCCeEEEeeCCCcEEEEeCCC---------ceEEEEEEecC-ceeEEE
Q 020021          103 LRLLSL-HDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA---------EKCQGLLRVQG-RPAAAY  169 (332)
Q Consensus       103 v~v~d~-~~~~~~~~~~~--h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~---------~~~~~~~~~~~-~~~~~~  169 (332)
                      |++||+ .+++. ..+.+  |...|.+++|+| ++.|++++.|+.|++||+++         +++...+.... .....+
T Consensus        81 i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  158 (342)
T 1yfq_A           81 ILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             EEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             EEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence            999999 87754 77888  999999999999 99999999999999999876         55443333222 234455


Q ss_pred             cCCCeEEEEEeCCEEEEEECcc-CCCCCeeEEEecCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEEccCC------eEe
Q 020021          170 DDQGLVFAVAFGGYIRMFDARK-YEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRG------TLL  241 (332)
Q Consensus       170 ~~~~~~~~~~~~~~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~------~~~  241 (332)
                      .++. +++++.++.|++||++. .... .. .....+...+.+++|+| +++++++++.||.|++||....      +..
T Consensus       159 ~~~~-l~~~~~d~~i~i~d~~~~~~~~-~~-~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  235 (342)
T 1yfq_A          159 NSSR-LIVGMNNSQVQWFRLPLCEDDN-GT-IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             CSSE-EEEEESTTEEEEEESSCCTTCC-CE-EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             cCCc-EEEEeCCCeEEEEECCcccccc-ce-eeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence            5555 77777889999999986 4321 21 22234556789999999 9999999999999999999876      555


Q ss_pred             EEeeecCC------CCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC-CCCCceEEeCCCeeEEEeccce
Q 020021          242 STYNVKPV------SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       242 ~~~~~~~~------~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      ..+..+..      +...+.+++|+|++++|++|+.||.|++||+.+++.+..+..| ...|.+++  |++++|++++.|
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D  313 (342)
T 1yfq_A          236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD  313 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred             eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence            55553221      2347889999999999999999999999999999999999988 99999999  999999999988


Q ss_pred             EE
Q 020021          315 LS  316 (332)
Q Consensus       315 ~~  316 (332)
                      ..
T Consensus       314 g~  315 (342)
T 1yfq_A          314 DT  315 (342)
T ss_dssp             TH
T ss_pred             Cc
Confidence            54

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-37  Score=285.40  Aligned_cols=289  Identities=14%  Similarity=0.194  Sum_probs=226.3

Q ss_pred             cccceeEe-ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCC---Cee---eEEeeecccceeEEEEccCCCEEEEe
Q 020021           23 SMEVGMSF-RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA---ATC---LKTINSKKYGVDLVCFTSHPTTVIYS   94 (332)
Q Consensus        23 ~~~~~~~l-~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~---~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~   94 (332)
                      ..++...| .+|+++|++++|+| ++++|+||+.|++|+|||+.+   +.+   ...+ .|...|..++|++++..++++
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred             cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEE
Confidence            35667788 89999999999999 999999999999999999976   432   2333 478889999999999999888


Q ss_pred             cCCCCCceeEEEEcc---CCceEEEeecc------------cccEEEEE--ecCCCCeEEEeeCCCcEEEEeCCCceEEE
Q 020021           95 SKNGWDESLRLLSLH---DNKYLRYFKGH------------HDRVVSLS--LCSSKDCFISGSLDRTVLLWDQRAEKCQG  157 (332)
Q Consensus        95 s~~g~d~~v~v~d~~---~~~~~~~~~~h------------~~~V~~v~--~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~  157 (332)
                      +.   |++|++||+.   .++.+..+.+|            ...+.++.  +++++.+|++++.|++|++||++++++..
T Consensus       130 s~---dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  206 (437)
T 3gre_A          130 SK---DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ  206 (437)
T ss_dssp             ET---TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred             eC---CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence            65   8899999994   66666555544            34455554  44678999999999999999999999888


Q ss_pred             EEEec----CceeEEEcCCCeEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeE----EEcCCCCEEEEEcCCC
Q 020021          158 LLRVQ----GRPAAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV----KFSNDGRLMLLTTMEG  228 (332)
Q Consensus       158 ~~~~~----~~~~~~~~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v----~~s~dg~~l~~~~~dg  228 (332)
                      .+..+    ......+++++.+++ ++.|+.|++||++...  ....+.. .+...+.++    .|+|++.++++++.||
T Consensus       207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~~dg  283 (437)
T 3gre_A          207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV--LIRSWSF-GDHAPITHVEVCQFYGKNSVIVVGGSSKT  283 (437)
T ss_dssp             EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE--EEEEEBC-TTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred             EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc--EEEEEec-CCCCceEEEEeccccCCCccEEEEEcCCC
Confidence            77652    234567777776554 5568999999998632  1112221 344578888    4556788999999999


Q ss_pred             eEEEEEccCCeEeEEeeecC-----------------------CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          229 HIHVLDSFRGTLLSTYNVKP-----------------------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~-----------------------~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                      .|++||+.+++.+..+..+.                       .+...+.+++|+ ++++|++|+.||.|++||+.+++.
T Consensus       284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred             cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence            99999999999887775321                       144567889999 889999999999999999999887


Q ss_pred             EEEecC-------------------------------------CCCCCceEEeCCC--eeEEEeccce--EEEec
Q 020021          286 VASWMS-------------------------------------FDTEPPVIKWTPG--SLMFVTGSSE--LSFWI  319 (332)
Q Consensus       286 ~~~~~~-------------------------------------~~~~v~~l~~sp~--~~~l~t~~~d--~~~w~  319 (332)
                      +..+..                                     |...|++++|+++  +.+|++|+.|  +++|.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            766654                                     7889999999998  8899999988  77773

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-36  Score=275.06  Aligned_cols=256  Identities=21%  Similarity=0.315  Sum_probs=212.3

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC------eeeEEeeecccceeEEEEccC
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA------TCLKTINSKKYGVDLVCFTSH   87 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~   87 (332)
                      +.+|+-  ...+....+..|...|.+++|+|+|.+|++|+.|+++++|++...      .....+..|...+..++|+++
T Consensus        88 v~vWd~--~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  165 (354)
T 2pbi_B           88 VIVWDS--FTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS  165 (354)
T ss_dssp             EEEEET--TTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSS
T ss_pred             EEEEEC--CCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCC
Confidence            556652  234556678889999999999999999999999999999998643      345667788889999999999


Q ss_pred             CCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecC--CCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--
Q 020021           88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--  163 (332)
Q Consensus        88 ~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--  163 (332)
                      +..+++++.   |++|++||+++++.+..+.+|...|.+++|+|  ++++|++|+.||+|++||++++++...+..+.  
T Consensus       166 ~~~l~t~s~---D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~  242 (354)
T 2pbi_B          166 DMQILTASG---DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD  242 (354)
T ss_dssp             SSEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             CCEEEEEeC---CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC
Confidence            999988864   88999999999999999999999999999987  46899999999999999999998887775433  


Q ss_pred             ceeEEEcCCCe-EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeE
Q 020021          164 RPAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS  242 (332)
Q Consensus       164 ~~~~~~~~~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~  242 (332)
                      .....+++++. +++++.|++|++||++...  ....+........+.+++|+|+|+++++++.|+.|++||+.+++.+.
T Consensus       243 v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~  320 (354)
T 2pbi_B          243 VNSVRYYPSGDAFASGSDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS  320 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence            34567777665 4555568999999998642  12222222223467889999999999999999999999999998877


Q ss_pred             EeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEE
Q 020021          243 TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS  279 (332)
Q Consensus       243 ~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd  279 (332)
                      .+.   .|...+.+++|+|||++|++|+.||+|+||+
T Consensus       321 ~l~---~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          321 ILF---GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEC---CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEE---CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            665   5678899999999999999999999999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.7e-36  Score=280.87  Aligned_cols=283  Identities=18%  Similarity=0.329  Sum_probs=231.2

Q ss_pred             ceeEeccCCCcE-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           26 VGMSFRDYNGRI-SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        26 ~~~~l~~h~~~I-~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      ....|.+|.+.| .++.|  ++++|++|+.|++|++||+.+++++..+.+|...|..++|++++ .+++++.   |++|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~---dg~i~  186 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGST---DRTVR  186 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEET---TSCEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeC---CCCEE
Confidence            456899999885 66666  46899999999999999999999999999999999999999887 6666654   88999


Q ss_pred             EEEccCCceEEEeecccccEEEEEec--CCCCeEEEeeCCCcEEEEeCCCceEEE-----------------------EE
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLC--SSKDCFISGSLDRTVLLWDQRAEKCQG-----------------------LL  159 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~--~~~~~l~s~s~Dg~i~iWd~~~~~~~~-----------------------~~  159 (332)
                      +||+.+++.+..+.+|.+.|.+++|+  +++++|++++.|++|++||++++....                       .+
T Consensus       187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            99999999999999999999999998  577899999999999999998765321                       12


Q ss_pred             EecCceeEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC
Q 020021          160 RVQGRPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  238 (332)
Q Consensus       160 ~~~~~~~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~  238 (332)
                      ..+......+.+ ...+++++.|+.|++||++..+    ......++...+.+++|+|+++++++++.||.|++||+.++
T Consensus       267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            112222223333 3456666679999999997532    23445567788999999999999999999999999999999


Q ss_pred             eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce-EEE
Q 020021          239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSF  317 (332)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d-~~~  317 (332)
                      +.+..+.   .|...+..++|+  +++|++|+.||+|++||+.+++..... .+...+..++|+|+++++++++.. +++
T Consensus       343 ~~~~~~~---~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~dg~i~i  416 (464)
T 3v7d_B          343 ELMYTLQ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGSENQFNI  416 (464)
T ss_dssp             EEEEEEC---CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEETTEEEE
T ss_pred             cEEEEEe---CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEecCCeEEE
Confidence            9888776   466778888886  589999999999999999987765554 356678889999999999998743 999


Q ss_pred             ecccccc
Q 020021          318 WIPDLSK  324 (332)
Q Consensus       318 w~~~~~~  324 (332)
                      |+....+
T Consensus       417 wd~~~g~  423 (464)
T 3v7d_B          417 YNLRSGK  423 (464)
T ss_dssp             EETTTCC
T ss_pred             EECCCCc
Confidence            9875544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.5e-37  Score=279.19  Aligned_cols=252  Identities=16%  Similarity=0.229  Sum_probs=196.8

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEE----eeecccceeEEEEccCCCEEEEecCCCC
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT----INSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~s~~g~   99 (332)
                      .++.....+|.+.|.+++|+|++. +++++.|++|+|||+.+++++..    ..+|...|..++|+|++..+++++.   
T Consensus        84 ~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~---  159 (357)
T 4g56_B           84 ESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK---  159 (357)
T ss_dssp             GGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET---
T ss_pred             eeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC---
Confidence            344556778999999999999975 55788999999999998876532    3467788999999999999998864   


Q ss_pred             CceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEecC----ceeEEEcCC-C
Q 020021          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQ-G  173 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~----~~~~~~~~~-~  173 (332)
                      |++|++||+.+++.+..+.+|...|++++|+++++ .+++++.|++|++||++++++...+....    .....++++ +
T Consensus       160 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  239 (357)
T 4g56_B          160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD  239 (357)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence            88999999999999999999999999999999875 79999999999999999887665443321    234566664 4


Q ss_pred             eEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC
Q 020021          174 LVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  251 (332)
Q Consensus       174 ~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  251 (332)
                      .+++ ++.|+.|++||++..+.    .....++...+.+++|+|++ ++|++++.|++|++||+.+++++..+    .|.
T Consensus       240 ~~la~g~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----~H~  311 (357)
T 4g56_B          240 DTFACGDETGNVSLVNIKNPDS----AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----SHR  311 (357)
T ss_dssp             TEEEEEESSSCEEEEESSCGGG----CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC----CCS
T ss_pred             ceEEEeecccceeEEECCCCcE----eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC----CCC
Confidence            4554 45689999999986432    23345677789999999998 57899999999999999999877654    467


Q ss_pred             CcceEEEECC-CCCEEEEEcCCCcEEEEECCCCceEE
Q 020021          252 NSTLEASFSP-EGMFVISGSGDGSVYAWSVRSGKEVA  287 (332)
Q Consensus       252 ~~~~~v~~sp-dg~~l~sgs~Dg~i~vWd~~~~~~~~  287 (332)
                      ..|.+++|+| |+++|+|||.||+|++|++.+.....
T Consensus       312 ~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~  348 (357)
T 4g56_B          312 DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE  348 (357)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred             CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence            8899999999 89999999999999999997654433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-36  Score=277.67  Aligned_cols=277  Identities=13%  Similarity=0.174  Sum_probs=232.8

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~  111 (332)
                      +|.+.|.+++|+|++++|++++.|++|++|| .+++.+..+..|...|..++|++++..+++++.   |+.+++||+.++
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~  181 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV---ENVTILWNVISG  181 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET---TCCEEEEETTTT
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec---CCeEEEEECCCC
Confidence            3789999999999999999999999999999 678888899999999999999999999888764   789999999999


Q ss_pred             ceEEEeeccccc---------------EEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCe
Q 020021          112 KYLRYFKGHHDR---------------VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGL  174 (332)
Q Consensus       112 ~~~~~~~~h~~~---------------V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~  174 (332)
                      +.+..+..|...               +.++.|++++ .+++++.|+.|++||+++++....+..+.  .....+++++.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  260 (425)
T 1r5m_A          182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK  260 (425)
T ss_dssp             EEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred             cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence            999999888887               9999999875 68999999999999999887766554332  23456667665


Q ss_pred             -EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021          175 -VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (332)
Q Consensus       175 -~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (332)
                       +++++.++.|++||++..+.  .  ....++...+..++|+|++ ++++++.|+.|++||+.+++.+..+.   .+...
T Consensus       261 ~l~~~~~d~~i~i~d~~~~~~--~--~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~  332 (425)
T 1r5m_A          261 LLLSASDDGTLRIWHGGNGNS--Q--NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI---VDGVP  332 (425)
T ss_dssp             EEEEEETTSCEEEECSSSBSC--S--EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE---CTTCC
T ss_pred             EEEEEcCCCEEEEEECCCCcc--c--eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc---cCCcc
Confidence             44555689999999876432  1  2234566789999999999 99999999999999999999887776   35678


Q ss_pred             ceEEEECCCCCEEEEEcCCCcEEEEECCCCc--------------------eEEEecCCCC--CCceEEeCCCeeEEEec
Q 020021          254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGK--------------------EVASWMSFDT--EPPVIKWTPGSLMFVTG  311 (332)
Q Consensus       254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~--------------------~~~~~~~~~~--~v~~l~~sp~~~~l~t~  311 (332)
                      +..++|+|++++|++++.||.|++||+.+++                    .+..+..|..  .|.+++|+|++++|+++
T Consensus       333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  412 (425)
T 1r5m_A          333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA  412 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence            8899999999999999999999999999888                    7888888876  89999999999999998


Q ss_pred             cce--EEEeccc
Q 020021          312 SSE--LSFWIPD  321 (332)
Q Consensus       312 ~~d--~~~w~~~  321 (332)
                      +.|  +.+|+.+
T Consensus       413 ~~dg~i~iw~~~  424 (425)
T 1r5m_A          413 YSLQEGSVVAIP  424 (425)
T ss_dssp             ESSSCCEEEECC
T ss_pred             ecCceEEEEeec
Confidence            887  7888754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-36  Score=269.40  Aligned_cols=254  Identities=15%  Similarity=0.200  Sum_probs=190.0

Q ss_pred             cceeEe-cc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC-------CCeeeEEeeecccceeEEEEccCCCEEEEec
Q 020021           25 EVGMSF-RD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVT-------AATCLKTINSKKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        25 ~~~~~l-~~-h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      +....+ .+ |.++|.+++|+|++++|++|+.|++|+|||+.       ..+++..+.+|...|..++|+|++..+++++
T Consensus        47 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s  126 (330)
T 2hes_X           47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS  126 (330)
T ss_dssp             EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE
T ss_pred             EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence            445556 45 99999999999999999999999999999984       3456778889999999999999999998886


Q ss_pred             CCCCCceeEEEEccC----CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCc--eEEEEEEecC--ceeE
Q 020021           96 KNGWDESLRLLSLHD----NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQG--RPAA  167 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~----~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~~~~--~~~~  167 (332)
                      .   |++|++||+..    .+++..+.+|...|.+++|+|++++|+|++.|++|++||..++  ++...+..+.  ....
T Consensus       127 ~---D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~  203 (330)
T 2hes_X          127 R---DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS  203 (330)
T ss_dssp             T---TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred             C---CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEE
Confidence            4   88999999943    2467789999999999999999999999999999999998765  4444443332  2345


Q ss_pred             EEcCC--C-eEEEEEeCCEEEEEECccCCCCC----eeEEEecC-CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe
Q 020021          168 AYDDQ--G-LVFAVAFGGYIRMFDARKYEKGP----FDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  239 (332)
Q Consensus       168 ~~~~~--~-~~~~~~~~~~i~vwd~~~~~~~~----~~~~~~~~-~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~  239 (332)
                      .++++  + .+++++.|++|++||++......    .....+.+ |...+.+++|++++ ++++++.||.|++||..+++
T Consensus       204 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          204 DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred             EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence            66665  4 35566679999999986532111    11122222 66789999999766 78999999999999998774


Q ss_pred             EeEEeeecCCCCC-cceEEEECC--CCCEEEEEcCCCcEEEEECCC
Q 020021          240 LLSTYNVKPVSRN-STLEASFSP--EGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       240 ~~~~~~~~~~~~~-~~~~v~~sp--dg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      ..........|.. .+..++|+|  ++++||||+.||+|++||+.+
T Consensus       283 ~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          283 WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             eEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            2211111123444 788999999  799999999999999999865

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8.7e-36  Score=275.54  Aligned_cols=274  Identities=16%  Similarity=0.227  Sum_probs=221.9

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee--ecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      .++.|+||++ ++||.| .|++|+|||+.++++++.+.  .|...|.+++|++++..+++++.   |++|++||+++++.
T Consensus       107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~---Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQKR  181 (420)
T ss_dssp             TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEE
T ss_pred             cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC---CCeEEEEEcCCCcE
Confidence            4567999975 577665 59999999999999988776  45567999999999999998865   88999999999999


Q ss_pred             EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceE-EEEEEecC--ceeEEEcCCCe-EEEEEeCCEEEEEEC
Q 020021          114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQG--RPAAAYDDQGL-VFAVAFGGYIRMFDA  189 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~-~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~i~vwd~  189 (332)
                      +..+.+|...|.++.++  +..|++|+.|+++++||...... ...+..+.  .....+.+.+. +++++.|+.+++||.
T Consensus       182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~  259 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  259 (420)
T ss_dssp             EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence            99999999999988775  68999999999999999876443 33333322  23445566665 445556899999999


Q ss_pred             ccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEE--EcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEE
Q 020021          190 RKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLL--TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  266 (332)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l  266 (332)
                      ...+...........+...+.+++|+|++. ++++  ++.|++|++||+.+++.+..+..    ...+..+.|+|+++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~~~~~l  335 (420)
T 4gga_A          260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA----HSQVCSILWSPHYKEL  335 (420)
T ss_dssp             SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC----SSCEEEEEEETTTTEE
T ss_pred             ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc----ccceeeeeecCCCCeE
Confidence            865543333334445667899999999765 4444  45799999999999998877752    3467788999999999


Q ss_pred             EEEc--CCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          267 ISGS--GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       267 ~sgs--~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      ++++  .|+.|+|||+.+++++..+.+|...|++|+|+||+++|+||+.|  +++|+.
T Consensus       336 v~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             EEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            8865  79999999999999999999999999999999999999999988  888875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.5e-36  Score=270.58  Aligned_cols=262  Identities=10%  Similarity=0.173  Sum_probs=214.0

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC----eeeEEeeecccceeEEEEcc--CCCEEEEecCCCCCc
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDE  101 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~~~~~s~~g~d~  101 (332)
                      ..+.+|.+.|++++|+|++++|++|+.|++|++||+.++    +.+..+..|...|..++|++  ++..+++++.   |+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~---dg   81 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY---DK   81 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET---TS
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC---CC
Confidence            457899999999999999999999999999999999876    46677888999999999999  5788887764   88


Q ss_pred             eeEEEEccCC---------ceEEEeecccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEc
Q 020021          102 SLRLLSLHDN---------KYLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD  170 (332)
Q Consensus       102 ~v~v~d~~~~---------~~~~~~~~h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~  170 (332)
                      .|++||+..+         +.+..+.+|...|.+++|+|+  +++|++++.||.|++||++++++...+.....      
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------  155 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE------  155 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE------
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc------
Confidence            9999999887         557888999999999999999  99999999999999999987764332221100      


Q ss_pred             CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC---CCEEEEEcCCCeEEEEEccCCeEeEEeeec
Q 020021          171 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---GRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (332)
Q Consensus       171 ~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d---g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (332)
                                   +....           .....+...+.+++|+|+   +.++++++.++.+.+|+...++...... .
T Consensus       156 -------------~~~~~-----------~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~  210 (351)
T 3f3f_A          156 -------------MKVLS-----------IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK-L  210 (351)
T ss_dssp             -------------EESCS-----------CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE-C
T ss_pred             -------------ccccc-----------cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee-c
Confidence                         00000           001134457889999997   9999999999999888877776532222 2


Q ss_pred             CCCCCcceEEEECCCC----CEEEEEcCCCcEEEEECCCC----------------------------------------
Q 020021          248 PVSRNSTLEASFSPEG----MFVISGSGDGSVYAWSVRSG----------------------------------------  283 (332)
Q Consensus       248 ~~~~~~~~~v~~spdg----~~l~sgs~Dg~i~vWd~~~~----------------------------------------  283 (332)
                      ..|...+.+++|+|++    ++|++|+.||.|++||+.++                                        
T Consensus       211 ~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
T 3f3f_A          211 PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL  290 (351)
T ss_dssp             CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------
T ss_pred             CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeee
Confidence            2467889999999998    89999999999999999764                                        


Q ss_pred             ------ceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccccc
Q 020021          284 ------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS  323 (332)
Q Consensus       284 ------~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~  323 (332)
                            +.+..+..|...|++++|+|++++|++++.|  +++|+....
T Consensus       291 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence                  5566778899999999999999999999987  888887653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=267.40  Aligned_cols=255  Identities=15%  Similarity=0.212  Sum_probs=200.3

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC--eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEE
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d  107 (332)
                      +.+|.+.|.+++|+|++++|++|+.|++++|||+.++  +++.++.+|...|..++|+|++..+++++.   |++|++||
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~---D~~v~iwd  133 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR---DKSVWVWE  133 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC---CCeEEEEE
Confidence            3789999999999999999999999999999999876  467888999999999999999999998864   88999999


Q ss_pred             ccCCc---eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEE--EEEEec--CceeEEEcCCCeEE-EEE
Q 020021          108 LHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ--GLLRVQ--GRPAAAYDDQGLVF-AVA  179 (332)
Q Consensus       108 ~~~~~---~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~--~~~~~~--~~~~~~~~~~~~~~-~~~  179 (332)
                      +..+.   ++..+.+|...|.+++|+|++++|++++.|++|++||.+.+...  ..+..+  ......+++++.++ +++
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s  213 (345)
T 3fm0_A          134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS  213 (345)
T ss_dssp             ECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence            97753   46678899999999999999999999999999999998877543  233222  23456778877654 455


Q ss_pred             eCCEEEEEECccCCCCC-----------eeEEEecC-CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeE----eE-
Q 020021          180 FGGYIRMFDARKYEKGP-----------FDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL----LS-  242 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~-----------~~~~~~~~-~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~----~~-  242 (332)
                      .|++|++||........           .......+ +...+..++|+|++..+++++.|+.|++|+...+..    .. 
T Consensus       214 ~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  293 (345)
T 3fm0_A          214 DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS  293 (345)
T ss_dssp             TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE
T ss_pred             CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE
Confidence            68999999974322110           01112222 566889999999999999999999999999865421    11 


Q ss_pred             -EeeecCCCCCcceEEEECCCC-CEEEEEcCCCcEEEEECCCCceEE
Q 020021          243 -TYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVA  287 (332)
Q Consensus       243 -~~~~~~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~~~~~  287 (332)
                       .......|...+.+++|+|++ .+|||||.||+|++|++.+++.+.
T Consensus       294 ~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          294 LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence             112233577889999999998 599999999999999998877654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.7e-38  Score=285.09  Aligned_cols=247  Identities=13%  Similarity=0.098  Sum_probs=192.1

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC--eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      ...+..|.++|++++|+|++++|++|+.|++|+|||+.++  +++..+..|...|..++|+|++..+++++.   |++|+
T Consensus         4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---d~~v~   80 (377)
T 3dwl_C            4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ---DRNAY   80 (377)
T ss_dssp             EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET---TSSEE
T ss_pred             ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC---CCeEE
Confidence            3456678889999999999999999999999999999988  788889999999999999999999988864   88999


Q ss_pred             EEEccCCc---eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceE---EEEEEe-c--CceeEEEcCCCe-
Q 020021          105 LLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC---QGLLRV-Q--GRPAAAYDDQGL-  174 (332)
Q Consensus       105 v~d~~~~~---~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~---~~~~~~-~--~~~~~~~~~~~~-  174 (332)
                      +||+.+++   ....+.+|...|.+++|+|++++|++++.|++|++||+++++.   ...+.. +  ......+++++. 
T Consensus        81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  160 (377)
T 3dwl_C           81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL  160 (377)
T ss_dssp             EC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred             EEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence            99999877   6778889999999999999999999999999999999988763   334432 1  234567777765 


Q ss_pred             EEEEEeCCEEEEEECccCCCC------------Ce--eEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeE
Q 020021          175 VFAVAFGGYIRMFDARKYEKG------------PF--DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  240 (332)
Q Consensus       175 ~~~~~~~~~i~vwd~~~~~~~------------~~--~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~  240 (332)
                      +++++.|+.|++||++.....            +.  ..... ++...+.+++|+|+|+++++++.||.|++||+.+++.
T Consensus       161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            445556899999998532100            01  11222 6677899999999999999999999999999998876


Q ss_pred             ----eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021          241 ----LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       241 ----~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                          +..+.   .|...+.+++|+||+++|++|+.|+.+ +|+..
T Consensus       240 ~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          240 PPRALITVK---LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CEEECCCEE---CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             cceeeEeec---CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence                44444   456788999999999999999877665 67664

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.3e-36  Score=279.89  Aligned_cols=277  Identities=17%  Similarity=0.213  Sum_probs=220.8

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY  116 (332)
Q Consensus        37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~  116 (332)
                      +++++|+|++++|++++.|+++++||+.+++....+..+ ..+...++++++..+++++.   |+.|++||+.+++....
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~  134 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTT---EGDIKVLDSNFNLQREI  134 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEET---TSCEEEECTTSCEEEEE
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEEC---CCCEEEEeCCCcceeee
Confidence            447899999999999999999999999988777666655 33455578889988888864   78999999999999888


Q ss_pred             eecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCe-EEEEEeCCEEEEEECccCC
Q 020021          117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGL-VFAVAFGGYIRMFDARKYE  193 (332)
Q Consensus       117 ~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~i~vwd~~~~~  193 (332)
                      +.+|...|++++|+|++++|++++.|++|++||++++++...+..+.  .....+++++. +++++.|+.|++||++..+
T Consensus       135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            89999999999999999999999999999999999888777665433  34566777665 5556678999999987542


Q ss_pred             CCCeeEEEec-C---------------------CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC
Q 020021          194 KGPFDIFSVG-G---------------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  251 (332)
Q Consensus       194 ~~~~~~~~~~-~---------------------~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  251 (332)
                      .  ...+... .                     +...+..++|+|+|+++++++.||.|++||+.+++.+..+.  ..+.
T Consensus       215 ~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~  290 (420)
T 3vl1_A          215 T--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP--SKFT  290 (420)
T ss_dssp             E--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC--CTTS
T ss_pred             e--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc--cccC
Confidence            1  1111100 0                     12456667789999999999999999999999988766553  2456


Q ss_pred             CcceEEEECCCCC-EEEEEcCCCcEEEEECCCCce-EEEecC-CCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          252 NSTLEASFSPEGM-FVISGSGDGSVYAWSVRSGKE-VASWMS-FDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       252 ~~~~~v~~spdg~-~l~sgs~Dg~i~vWd~~~~~~-~~~~~~-~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                      ..+.+++|+|+++ +|++|+.||.|++||+.+++. +..+.. |...+.++.| |++++|++++.|  +++|+...
T Consensus       291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred             CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence            7889999999999 999999999999999998754 566665 6667777755 577889998877  78887543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.6e-35  Score=258.51  Aligned_cols=273  Identities=16%  Similarity=0.221  Sum_probs=217.4

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee--cccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS--KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      .++|+||+++ +||+| .|++|+|||+.++++++.+..  |...|..++|+++++.+++++.   |++|++||+++++.+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~---Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC---CCcEEEeecCCceeE
Confidence            5789999876 66655 599999999999999988764  5567999999999999998865   889999999999999


Q ss_pred             EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEE-EEEEecC--ceeEEEcCCCe-EEEEEeCCEEEEEECc
Q 020021          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLLRVQG--RPAAAYDDQGL-VFAVAFGGYIRMFDAR  190 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~-~~~~~~~--~~~~~~~~~~~-~~~~~~~~~i~vwd~~  190 (332)
                      ..+.+|...+.++.+  ++..+++++.|+.+++|+....... ..+..+.  .....+.+.+. +++++.|+.|++||++
T Consensus       103 ~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  180 (318)
T 4ggc_A          103 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  180 (318)
T ss_dssp             EEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence            999999999887655  5689999999999999998765433 2333222  23445556554 5556678999999998


Q ss_pred             cCCCCCeeEEEecCCCCCceeEEEcCCCCEE---EEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEE
Q 020021          191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLM---LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (332)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~  267 (332)
                      ..+...........+...+..++++|++..+   ++++.++.|++||...........    +...+..+.|+|++++++
T Consensus       181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~  256 (318)
T 4ggc_A          181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELI  256 (318)
T ss_dssp             CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEETTTTEEE
T ss_pred             CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecccccceE
Confidence            6543322233334455678889999987533   456788999999998877665443    345677889999999888


Q ss_pred             EEc--CCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          268 SGS--GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       268 sgs--~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      +++  .|+.|+|||+.+++.+..+.+|.+.|++|+|+||+++|+|++.|  +++|+.
T Consensus       257 ~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            764  89999999999999999999999999999999999999999988  777765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.3e-35  Score=269.45  Aligned_cols=241  Identities=17%  Similarity=0.262  Sum_probs=200.2

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      ..|.+++|+|+|++|++|+.|++|+|||+.+++++..+.+|...|..++|+|++..+++++.   |++|++||+.++++.
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~---d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG---DRTVRIWDLRTGQCS  200 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC---CCcEEEEECCCCeeE
Confidence            35999999999999999999999999999999999999999999999999999999988764   889999999999887


Q ss_pred             EEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEe-------c--CceeEEEcCCCe-EEEEEeCCE
Q 020021          115 RYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRV-------Q--GRPAAAYDDQGL-VFAVAFGGY  183 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-------~--~~~~~~~~~~~~-~~~~~~~~~  183 (332)
                      ..+. |...+.+++|+| ++++|++++.|++|++||++++.+...+..       +  ......+++++. +++++.|+.
T Consensus       201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~  279 (393)
T 1erj_A          201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS  279 (393)
T ss_dssp             EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            7776 567899999999 899999999999999999998877655521       1  233567777775 445556899


Q ss_pred             EEEEECccCCCC--------CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021          184 IRMFDARKYEKG--------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (332)
Q Consensus       184 i~vwd~~~~~~~--------~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  255 (332)
                      |++||++.....        ........+|...+.+++++|+++++++++.|+.|++||..+++.+..+.   .|...+.
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~---~h~~~v~  356 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ---GHRNSVI  356 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEE
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC---CCCCCEE
Confidence            999998754211        11123445677789999999999999999999999999999999887776   4677888


Q ss_pred             EEEECC------CCCEEEEEcCCCcEEEEECCC
Q 020021          256 EASFSP------EGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       256 ~v~~sp------dg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      +++|+|      ++++|+||+.||+|+||++.+
T Consensus       357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            999876      789999999999999999854

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.2e-35  Score=271.54  Aligned_cols=282  Identities=19%  Similarity=0.301  Sum_probs=233.7

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~  102 (332)
                      +.+..+.+.+|.+.|.++.|+  ++++++|+.|++|++||+.+++++..+..|...|..+++.  +..+++++.   |++
T Consensus       148 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~---dg~  220 (445)
T 2ovr_B          148 TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR---DAT  220 (445)
T ss_dssp             TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET---TSE
T ss_pred             CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC---CCE
Confidence            456778899999999999998  6799999999999999999999999999999889888885  556777764   889


Q ss_pred             eEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeEEEEEe
Q 020021          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVAF  180 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  180 (332)
                      |++||+.+++.+..+.+|...|.++.+  +++.+++++.||+|++||++++++...+..+...  ...+ .+..+++++.
T Consensus       221 i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~  297 (445)
T 2ovr_B          221 LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSL  297 (445)
T ss_dssp             EEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEET
T ss_pred             EEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEEeC
Confidence            999999999999999999999999998  7889999999999999999998887776544322  2333 4455666777


Q ss_pred             CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s  260 (332)
                      |+.|++||++..+    ......++...+.++.  +++.++++++.||.|++||+.+++.+..+.....+...+.+++|+
T Consensus       298 d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  371 (445)
T 2ovr_B          298 DTSIRVWDVETGN----CIHTLTGHQSLTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN  371 (445)
T ss_dssp             TSCEEEEETTTCC----EEEEECCCCSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC
T ss_pred             CCeEEEEECCCCC----EEEEEcCCcccEEEEE--EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC
Confidence            9999999997643    2233445555555554  467899999999999999999999888887554567788888884


Q ss_pred             CCCCEEEEEcCCCcEEEEECCCCceEEEe-----cCCCCCCceEEeCCCeeEEEeccce------EEEecccc
Q 020021          261 PEGMFVISGSGDGSVYAWSVRSGKEVASW-----MSFDTEPPVIKWTPGSLMFVTGSSE------LSFWIPDL  322 (332)
Q Consensus       261 pdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~l~t~~~d------~~~w~~~~  322 (332)
                        +++|++|+.||.|++||+.+++.+..+     ..|.+.|++++|+|++..+++++.|      +.+|+.+.
T Consensus       372 --~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          372 --KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             --SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             --CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence              689999999999999999999988877     4678889999999999999998875      44566544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-36  Score=270.38  Aligned_cols=255  Identities=13%  Similarity=0.110  Sum_probs=205.3

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC--CCeeeEEeeecccceeEEEEccC--CCEEEEecCCCCC
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWD  100 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g~d  100 (332)
                      ++.+.|.+|.++|.+++|+|++++|++|+.|++|+|||+.  +++++..+..|...|..++|+++  +..+++++.   |
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d   78 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---D   78 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---T
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc---C
Confidence            3457799999999999999999999999999999999998  56777888899999999999877  788888764   7


Q ss_pred             ceeEEEEccCCc--eEEEeecccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEEEEE--ec--CceeEEEcC-
Q 020021          101 ESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLR--VQ--GRPAAAYDD-  171 (332)
Q Consensus       101 ~~v~v~d~~~~~--~~~~~~~h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~--~~~~~~~~~-  171 (332)
                      +.|++||+.+++  .+..+.+|...|.+++|+|+  +++|++++.|++|++||++.+.......  .+  ......+.+ 
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence            899999999987  77888899999999999999  9999999999999999998774332222  22  223456666 


Q ss_pred             ------------CC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC---CCEEEEEcCCCeEEEEEc
Q 020021          172 ------------QG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---GRLMLLTTMEGHIHVLDS  235 (332)
Q Consensus       172 ------------~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d---g~~l~~~~~dg~i~i~d~  235 (332)
                                  ++ .+++++.|+.|++||++.............+|...+.+++|+|+   ++++++++.||.|++||+
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence                        34 45556678999999998654322233455667788999999999   899999999999999999


Q ss_pred             cCCeEe--EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          236 FRGTLL--STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       236 ~~~~~~--~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      .++...  ........+...+.+++|+|++++|++++.||.|++|++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            886421  11111223567788999999999999999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-37  Score=280.31  Aligned_cols=279  Identities=15%  Similarity=0.229  Sum_probs=225.3

Q ss_pred             CCcEEEEEECCCCC-EEEEE----------eCCCcEEEEEcCCCe---eeEEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021           34 NGRISSMDFHKSSS-YLVTA----------SDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (332)
Q Consensus        34 ~~~I~~i~~s~dg~-~l~tg----------s~D~tv~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   99 (332)
                      ...|.+++|+|++. +|++|          +.|++|+|||+.+++   .+..+ .|...|..++|++++..+++++.   
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~---   87 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALD---   87 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEES---
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEcc---
Confidence            34688999999986 99999          899999999999876   33333 46778999999999999988764   


Q ss_pred             CceeEEEEccC----CceEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCce------EEEEE---Ee--cC
Q 020021          100 DESLRLLSLHD----NKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEK------CQGLL---RV--QG  163 (332)
Q Consensus       100 d~~v~v~d~~~----~~~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~------~~~~~---~~--~~  163 (332)
                      |+.|++||+..    .+.+..+.+|...|++++|+|+ +++|++++.|++|++||++++.      ....+   ..  ..
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred             CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence            78999999987    4578899999999999999998 8999999999999999998775      22111   11  12


Q ss_pred             ceeEEEcCC-Ce-EEEEEeCCEEEEEECccCCCCCeeEEEecCC------CCCceeEEEcCCC-CEEEEEcCCC---eEE
Q 020021          164 RPAAAYDDQ-GL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGD------ISDANVVKFSNDG-RLMLLTTMEG---HIH  231 (332)
Q Consensus       164 ~~~~~~~~~-~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~------~~~v~~v~~s~dg-~~l~~~~~dg---~i~  231 (332)
                      .....++++ +. +++++.++.|++||++..+.    ......+      ...+.+++|+|++ .++++++.|+   .|+
T Consensus       168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~  243 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKE----VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSIL  243 (416)
T ss_dssp             CCEEEECSSCTTEEEEESSSSCEEEEETTTTEE----EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCC
T ss_pred             eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc----ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEE
Confidence            335667765 44 44555689999999976421    2222222      5678999999998 6899999998   999


Q ss_pred             EEEccCC-eEeEEeeecCCCCCcceEEEECC-CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCe-eEE
Q 020021          232 VLDSFRG-TLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMF  308 (332)
Q Consensus       232 i~d~~~~-~~~~~~~~~~~~~~~~~~v~~sp-dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l  308 (332)
                      +||+.++ ..+..+.  ..|...+..++|+| ++++|++++.||+|++||+.+++.+..+..|...+.+++|+|++ .+|
T Consensus       244 ~~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l  321 (416)
T 2pm9_A          244 IWDLRNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLF  321 (416)
T ss_dssp             EEETTSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEE
T ss_pred             EEeCCCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEE
Confidence            9999886 3443332  13567889999999 99999999999999999999999999999999999999999999 899


Q ss_pred             Eeccce--EEEecccc
Q 020021          309 VTGSSE--LSFWIPDL  322 (332)
Q Consensus       309 ~t~~~d--~~~w~~~~  322 (332)
                      ++++.|  +++|+...
T Consensus       322 ~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          322 ACASFDNKIEVQTLQN  337 (416)
T ss_dssp             EECCSSSEEEEEESCC
T ss_pred             EEEecCCcEEEEEccC
Confidence            999887  78887644

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.7e-36  Score=273.90  Aligned_cols=266  Identities=19%  Similarity=0.289  Sum_probs=210.3

Q ss_pred             eeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-------eeEEeeecccceeEEEEc
Q 020021           13 SLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-------CLKTINSKKYGVDLVCFT   85 (332)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~-------~~~~~~~~~~~v~~~~~~   85 (332)
                      .+++|+.  ...+....+++|...|.+++|+|+|++|++|+.|++++|||+.+..       ....+.+|...+..+.|.
T Consensus        89 ~v~iWd~--~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~  166 (380)
T 3iz6_a           89 RLIVWNA--LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYV  166 (380)
T ss_dssp             EEEEEET--TTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCC
T ss_pred             eEEEEEC--CCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEe
Confidence            4666663  2345667899999999999999999999999999999999987532       345677888888889999


Q ss_pred             cCCC-EEEEecCCCCCceeEEEEccCCceEEEe-----ecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCC-ceEEE
Q 020021           86 SHPT-TVIYSSKNGWDESLRLLSLHDNKYLRYF-----KGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRA-EKCQG  157 (332)
Q Consensus        86 ~~~~-~~~~~s~~g~d~~v~v~d~~~~~~~~~~-----~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~-~~~~~  157 (332)
                      |+.. .+++++   .|++|++||+.+++.+..+     .+|...|.+++|++ ++++|+||+.|++|++||++. +.+..
T Consensus       167 ~~~~~~l~s~s---~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~  243 (380)
T 3iz6_a          167 PDQETRLITGS---GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR  243 (380)
T ss_dssp             SSSSSCEEEEC---TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE
T ss_pred             cCCCCEEEEEC---CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence            8755 466664   3899999999999988877     68999999999987 889999999999999999974 45555


Q ss_pred             EEEec--CceeEEEcCCCeEE-EEEeCCEEEEEECccCCCCCeeEEEec-----CCCCCceeEEEcCCCCEEEEEcCCCe
Q 020021          158 LLRVQ--GRPAAAYDDQGLVF-AVAFGGYIRMFDARKYEKGPFDIFSVG-----GDISDANVVKFSNDGRLMLLTTMEGH  229 (332)
Q Consensus       158 ~~~~~--~~~~~~~~~~~~~~-~~~~~~~i~vwd~~~~~~~~~~~~~~~-----~~~~~v~~v~~s~dg~~l~~~~~dg~  229 (332)
                      .+..+  ......+++++..+ +++.|++|++||++...  ....+...     .+...+.+++|+|+|+++++++.||.
T Consensus       244 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  321 (380)
T 3iz6_a          244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD  321 (380)
T ss_dssp             EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred             EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc--EEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence            55433  23466778877555 45568999999998642  11222111     11224789999999999999999999


Q ss_pred             EEEEEccCCeEeEEeee-cCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          230 IHVLDSFRGTLLSTYNV-KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       230 i~i~d~~~~~~~~~~~~-~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                      |++||..+++.+..+.. ...|...+.+++|+|||++|+|||.||+|+||++...+.
T Consensus       322 i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             EEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             EEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence            99999998887766532 235778899999999999999999999999999976543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.5e-35  Score=263.63  Aligned_cols=249  Identities=13%  Similarity=0.195  Sum_probs=197.8

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      ...+.|.+|...|.+++|+|++.+++||+.|++|++||+.+++++..+.+|...|..++|+|++..+++++.   |++|+
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~---d~~i~  143 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA---EREIK  143 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET---TSCEE
T ss_pred             cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC---CCEEE
Confidence            456789999999999999999999999999999999999999999999999999999999999999988764   88999


Q ss_pred             EEEccCCceEEEee---cccccEEEEEecCCC----------CeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEE
Q 020021          105 LLSLHDNKYLRYFK---GHHDRVVSLSLCSSK----------DCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAY  169 (332)
Q Consensus       105 v~d~~~~~~~~~~~---~h~~~V~~v~~~~~~----------~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~  169 (332)
                      +||+.. .....+.   +|...|.+++|+|++          .+|++++.|++|++||.+ ......+..+.  .....+
T Consensus       144 ~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~  221 (343)
T 2xzm_R          144 LWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSI  221 (343)
T ss_dssp             EEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEE
T ss_pred             EEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEE
Confidence            999974 3333333   799999999999987          689999999999999954 44444444332  345677


Q ss_pred             cCCCeEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeE--Eeee
Q 020021          170 DDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS--TYNV  246 (332)
Q Consensus       170 ~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~--~~~~  246 (332)
                      ++++.+++ ++.|+.|++||++..... ...+.   +...+.+++|+|++++++++ .|+.|++||+.+++...  .+..
T Consensus       222 s~~g~~l~sgs~dg~v~iwd~~~~~~~-~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~  296 (343)
T 2xzm_R          222 SPNGKYIATGGKDKKLLIWDILNLTYP-QREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEA  296 (343)
T ss_dssp             CTTSSEEEEEETTCEEEEEESSCCSSC-SEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCC
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCccc-ceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeec
Confidence            88776554 556899999999643322 22222   12358999999999987654 67889999998766443  2221


Q ss_pred             c--------CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCC
Q 020021          247 K--------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       247 ~--------~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~  283 (332)
                      .        ..+...+.+++|+|+|++|++|+.||+|++|++.++
T Consensus       297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            1        135567889999999999999999999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.2e-35  Score=269.56  Aligned_cols=297  Identities=15%  Similarity=0.196  Sum_probs=230.2

Q ss_pred             ccceeEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEee-------------ecccceeEEEEcc-CC
Q 020021           24 MEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTIN-------------SKKYGVDLVCFTS-HP   88 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~   88 (332)
                      .+....+++|.+.|++++|+| ++++|++|+.|++|++||+.+++....+.             .|...|..++|++ ++
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  112 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT  112 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence            455677899999999999999 99999999999999999999887665543             4778899999999 56


Q ss_pred             CEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCC---CCeEEEeeCCCcEEEEeCCCceEEEEEEecC--
Q 020021           89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--  163 (332)
Q Consensus        89 ~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~---~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--  163 (332)
                      ..+++++.   |+.|++||+.+++.+..+. |...+.++.+++.   +.++++++.|+.|++||++++++...+..+.  
T Consensus       113 ~~l~s~~~---d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~  188 (408)
T 4a11_B          113 GMFTSSSF---DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE  188 (408)
T ss_dssp             TCEEEEET---TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC
T ss_pred             cEEEEEeC---CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc
Confidence            67777654   8899999999998887776 7888999999984   4499999999999999999887776665432  


Q ss_pred             ceeEEEcCCCe--EEEEEeCCEEEEEECccCCCCCeeE------------EEecCCCCCceeEEEcCCCCEEEEEcCCCe
Q 020021          164 RPAAAYDDQGL--VFAVAFGGYIRMFDARKYEKGPFDI------------FSVGGDISDANVVKFSNDGRLMLLTTMEGH  229 (332)
Q Consensus       164 ~~~~~~~~~~~--~~~~~~~~~i~vwd~~~~~~~~~~~------------~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~  229 (332)
                      .....+++++.  +++++.|+.|++||++.........            .....+...+..++|+|+|+++++++.||.
T Consensus       189 v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  268 (408)
T 4a11_B          189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR  268 (408)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence            34566777664  5566678999999998653211100            001245567899999999999999999999


Q ss_pred             EEEEEccCCeEeEEeeecC--CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeE
Q 020021          230 IHVLDSFRGTLLSTYNVKP--VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLM  307 (332)
Q Consensus       230 i~i~d~~~~~~~~~~~~~~--~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  307 (332)
                      |++||+.+++....+....  ..............+..++.++.|+.|++||+.+++.+..+..|...|.+++|+|++++
T Consensus       269 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  348 (408)
T 4a11_B          269 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQE  348 (408)
T ss_dssp             EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTE
T ss_pred             EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCE
Confidence            9999999887654332111  11111111222344556667788999999999999999999999999999999999999


Q ss_pred             EEeccce--EEEecccccc
Q 020021          308 FVTGSSE--LSFWIPDLSK  324 (332)
Q Consensus       308 l~t~~~d--~~~w~~~~~~  324 (332)
                      |++++.|  +++|++...+
T Consensus       349 l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          349 LYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             EEEEETTSCEEEEEECC--
T ss_pred             EEEECCCCeEEEEeCCCCC
Confidence            9999887  8888875543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-34  Score=256.72  Aligned_cols=256  Identities=18%  Similarity=0.326  Sum_probs=211.0

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY   93 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (332)
                      +.+|+-  ...+..+.+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+..|...|..++|+|++..+++
T Consensus        47 i~iw~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  124 (312)
T 4ery_A           47 IKIWGA--YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS  124 (312)
T ss_dssp             EEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             EEEEeC--CCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            444542  234566789999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC---ceeEEEc
Q 020021           94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYD  170 (332)
Q Consensus        94 ~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~---~~~~~~~  170 (332)
                      ++.   |+.|++||+.+++.+..+..|..+|.+++|+|++++|++++.|+.|++||++++++...+....   .....++
T Consensus       125 ~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  201 (312)
T 4ery_A          125 GSF---DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS  201 (312)
T ss_dssp             EET---TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC
T ss_pred             EeC---CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEEC
Confidence            864   8899999999999999999999999999999999999999999999999999888766553322   2345677


Q ss_pred             CCCeEE-EEEeCCEEEEEECccCCCCCeeEEEecCCCCC--ceeEEE-cCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021          171 DQGLVF-AVAFGGYIRMFDARKYEKGPFDIFSVGGDISD--ANVVKF-SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       171 ~~~~~~-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~--v~~v~~-s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                      +++.++ +++.|+.|++||++..+    ......++...  .....+ .+++.++++++.||.|++||+.+++.+..+. 
T Consensus       202 ~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-  276 (312)
T 4ery_A          202 PNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-  276 (312)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTTE----EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCc----EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-
Confidence            776544 45568999999997542    12223333322  122334 4678999999999999999999999887776 


Q ss_pred             cCCCCCcceEEEECCCCCEEEEEc--CCCcEEEEECC
Q 020021          247 KPVSRNSTLEASFSPEGMFVISGS--GDGSVYAWSVR  281 (332)
Q Consensus       247 ~~~~~~~~~~v~~spdg~~l~sgs--~Dg~i~vWd~~  281 (332)
                        .|...+..++|+|+++++++++  .|++|++|+..
T Consensus       277 --~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          277 --GHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             --CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             --ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence              4667899999999999999997  69999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.7e-35  Score=267.91  Aligned_cols=278  Identities=18%  Similarity=0.246  Sum_probs=224.7

Q ss_pred             eccCCCcE--EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee-cccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           30 FRDYNGRI--SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        30 l~~h~~~I--~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      ..+|...+  .+++|+  +..+++++.|++|++||+.++++...+.. |...|..++|++++..+++++.   |+.|++|
T Consensus        87 ~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~---dg~i~iw  161 (401)
T 4aez_A           87 APGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG---NGLVDIY  161 (401)
T ss_dssp             CTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET---TSCEEEE
T ss_pred             CCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC---CCeEEEE
Confidence            34676654  445555  46688999999999999999998887776 6778999999999999988865   7899999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC-CceEEEEEEecC--ceeEEEcCCCeEEE-EEeCC
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRVQG--RPAAAYDDQGLVFA-VAFGG  182 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~  182 (332)
                      |+.+++.+..+.+|...|.+++|  +++.|++++.||.|++||++ .+.....+..+.  .....+++++.+++ ++.|+
T Consensus       162 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~  239 (401)
T 4aez_A          162 DVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN  239 (401)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence            99999999999999999999999  45899999999999999998 444444554332  34566777765554 55689


Q ss_pred             EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEc--CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (332)
Q Consensus       183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~  259 (332)
                      .|++||++...    .......+...+.+++|+|++. ++++++  .|+.|++||+.+++.+..+.    +...+..++|
T Consensus       240 ~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~  311 (401)
T 4aez_A          240 VVQIWDARSSI----PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIW  311 (401)
T ss_dssp             CEEEEETTCSS----EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEE
T ss_pred             eEEEccCCCCC----ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEE
Confidence            99999998632    2334456677899999999875 555554  79999999999999887775    3456889999


Q ss_pred             CCCCCEEEE--EcCCCcEEEEECCCCceEE--EecCCCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          260 SPEGMFVIS--GSGDGSVYAWSVRSGKEVA--SWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       260 spdg~~l~s--gs~Dg~i~vWd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                      +|+++++++  |+.||.|++||+.+++...  .+..|...|.+++|+|++++|++++.|  +++|+...
T Consensus       312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             CSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             CCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            999999999  5589999999998865543  467899999999999999999999877  88887754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.4e-34  Score=278.38  Aligned_cols=305  Identities=14%  Similarity=0.172  Sum_probs=224.6

Q ss_pred             cceeEeccCCCc-EEEEEECC--CCCEEEEEeCCCcEEEEEcCCC--------eeeEEeeecccceeEEEEccCCCEEEE
Q 020021           25 EVGMSFRDYNGR-ISSMDFHK--SSSYLVTASDDESIRLYDVTAA--------TCLKTINSKKYGVDLVCFTSHPTTVIY   93 (332)
Q Consensus        25 ~~~~~l~~h~~~-I~~i~~s~--dg~~l~tgs~D~tv~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (332)
                      +....|.+|.+. |.+++|+|  ++++|++|+.|++|+|||+.++        +++..+..|...+..++|+|++..+++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            677889999999 99999999  9999999999999999999754        566667767777777777777665544


Q ss_pred             ecCC------------------------------------------CCCceeEEEEccCCceEEEeecccc---cEEEEE
Q 020021           94 SSKN------------------------------------------GWDESLRLLSLHDNKYLRYFKGHHD---RVVSLS  128 (332)
Q Consensus        94 ~s~~------------------------------------------g~d~~v~v~d~~~~~~~~~~~~h~~---~V~~v~  128 (332)
                      ++.+                                          +.|+.+++||+.+++.+..+.+|..   .|.+++
T Consensus       134 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~  213 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  213 (615)
T ss_dssp             EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             eccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE
Confidence            3321                                          2378999999999999999999999   999999


Q ss_pred             ecCC-CCeEEEeeCCCcEEEEeCCCceEEEEE-E---ecC--ceeEEEcCCCeEEEEEeCCEEEEEECccCCC------C
Q 020021          129 LCSS-KDCFISGSLDRTVLLWDQRAEKCQGLL-R---VQG--RPAAAYDDQGLVFAVAFGGYIRMFDARKYEK------G  195 (332)
Q Consensus       129 ~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~---~~~--~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~------~  195 (332)
                      |+|+ +++|++++.|+.|++||++++++...+ .   .+.  .....+.....+++++.|+.|++||++..+.      .
T Consensus       214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            9999 999999999999999999998887766 2   222  2345556333455566689999999864320      0


Q ss_pred             --------------------------Ce---------eEEEecCCCC---------------------------------
Q 020021          196 --------------------------PF---------DIFSVGGDIS---------------------------------  207 (332)
Q Consensus       196 --------------------------~~---------~~~~~~~~~~---------------------------------  207 (332)
                                                .+         ....+.++..                                 
T Consensus       294 ~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~  373 (615)
T 1pgu_A          294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSN  373 (615)
T ss_dssp             TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCS
T ss_pred             CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccC
Confidence                                      00         0011111222                                 


Q ss_pred             CceeEEE----------------------------------cCC------------------------------------
Q 020021          208 DANVVKF----------------------------------SND------------------------------------  217 (332)
Q Consensus       208 ~v~~v~~----------------------------------s~d------------------------------------  217 (332)
                      .+.+++|                                  +|+                                    
T Consensus       374 ~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (615)
T 1pgu_A          374 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS  453 (615)
T ss_dssp             CEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             ceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence            2222222                                  111                                    


Q ss_pred             --CCEEEEEcC-CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecC-CC
Q 020021          218 --GRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS-FD  293 (332)
Q Consensus       218 --g~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-~~  293 (332)
                        ++++++++. |+.|++||+.+++...  .....+...+.+++|+||+++|++++.||.|++||+.+++.+..+.. |.
T Consensus       454 ~~~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~  531 (615)
T 1pgu_A          454 LSQNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT  531 (615)
T ss_dssp             ECSSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCS
T ss_pred             EcCCEEEEeecCCCeEEEEECCCccccc--cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCC
Confidence              334444444 5555666555443321  11234667888999999999999999999999999999999988887 99


Q ss_pred             CCCceEEeCC----------CeeEEEeccce--EEEecccc--ccccccccc
Q 020021          294 TEPPVIKWTP----------GSLMFVTGSSE--LSFWIPDL--SKLGAYVGR  331 (332)
Q Consensus       294 ~~v~~l~~sp----------~~~~l~t~~~d--~~~w~~~~--~~~~~~~~~  331 (332)
                      ..|++++|+|          ++++|++++.|  +++|+.+.  +.+..+.+|
T Consensus       532 ~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h  583 (615)
T 1pgu_A          532 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH  583 (615)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS
T ss_pred             CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC
Confidence            9999999999          99999999877  88898765  355556555

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=288.50  Aligned_cols=284  Identities=13%  Similarity=0.103  Sum_probs=207.0

Q ss_pred             eEeccCCCcEEEEEECCC------CCEEEEEeCCCcEEEEEcCCCee-----------eEEeeecccceeEEEEccCCCE
Q 020021           28 MSFRDYNGRISSMDFHKS------SSYLVTASDDESIRLYDVTAATC-----------LKTINSKKYGVDLVCFTSHPTT   90 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~d------g~~l~tgs~D~tv~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~   90 (332)
                      .++.+|.+.|.+++|+|+      +.+||+++.|++|+|||+.++++           ..++..|...|.+++|+++ ..
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TT  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-Ce
Confidence            557889999999999997      57999999999999999987643           2356778888999999975 46


Q ss_pred             EEEecCCCCCceeEEEEccCC-ceEEEeecccccEEEE--EecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEEecC---
Q 020021           91 VIYSSKNGWDESLRLLSLHDN-KYLRYFKGHHDRVVSL--SLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQG---  163 (332)
Q Consensus        91 ~~~~s~~g~d~~v~v~d~~~~-~~~~~~~~h~~~V~~v--~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~---  163 (332)
                      +++++.   |++|++||+.++ .+...+.+|.+.|+++  .|++++ .+|+|+|.|++|++||++++++...+..+.   
T Consensus       280 lasgs~---DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~  356 (524)
T 2j04_B          280 VVCGFK---NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS  356 (524)
T ss_dssp             EEEEET---TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCC
T ss_pred             EEEEeC---CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccC
Confidence            777654   899999999876 4456789999999999  577887 899999999999999998877655443322   


Q ss_pred             -ceeEEEcCCCeE-EEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEe
Q 020021          164 -RPAAAYDDQGLV-FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  241 (332)
Q Consensus       164 -~~~~~~~~~~~~-~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~  241 (332)
                       ...+.++|++.. ++++.|++|++||++....    ...+.+|...|.+++|||+|+++++++.||+|++||+..+ .+
T Consensus       357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~----~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~  431 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA----VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LL  431 (524)
T ss_dssp             SCCCEEEETTTTEEEEECSSSEEEEEETTCTTC----CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TT
T ss_pred             cccceEeCCCcCeEEEeCCCCcEEEEECccccc----ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hc
Confidence             235677886654 4455678999999986432    1233467789999999999999999999999999998653 22


Q ss_pred             EEeeec--CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC-CCceEEEecCCCCCCceEEeCCCe---eEEEeccce-
Q 020021          242 STYNVK--PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-SGKEVASWMSFDTEPPVIKWTPGS---LMFVTGSSE-  314 (332)
Q Consensus       242 ~~~~~~--~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~~~~~v~~l~~sp~~---~~l~t~~~d-  314 (332)
                      ..+...  ......+..++|+|+++.+. ...  .+++|+.. ++..+..+..|..+|.+|+|+|++   ..+++|+.+ 
T Consensus       432 ~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g  508 (524)
T 2j04_B          432 HGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG  508 (524)
T ss_dssp             TCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTS
T ss_pred             cccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCc
Confidence            211100  01112456889999999653 322  34455443 466778889999999999999995   488888876 


Q ss_pred             -EEEeccccc
Q 020021          315 -LSFWIPDLS  323 (332)
Q Consensus       315 -~~~w~~~~~  323 (332)
                       +++|.+++.
T Consensus       509 ~vrlw~l~~~  518 (524)
T 2j04_B          509 LLTLEYLSLE  518 (524)
T ss_dssp             EEEEEECSCC
T ss_pred             eEEEEEcccc
Confidence             888887653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-35  Score=294.91  Aligned_cols=296  Identities=15%  Similarity=0.158  Sum_probs=214.7

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee-----------EEeeecccceeEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-----------KTINSKKYGVDLV   82 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~-----------~~~~~~~~~v~~~   82 (332)
                      +++|+-  ...+...++. |.+.|++++|+|++++|++|+.|++|++||+.++++.           ..+.+|...|..+
T Consensus        81 v~lWd~--~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl  157 (902)
T 2oaj_A           81 VYVLSL--YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI  157 (902)
T ss_dssp             EEEEET--TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred             EEEEEC--CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE
Confidence            455542  2234455665 7789999999999999999999999999999988764           2234577789999


Q ss_pred             EEccCC-CEEEEecCCCCCceeEEEEccCCceEEEeecc------------------cccEEEEEecCCCCeEEEeeCCC
Q 020021           83 CFTSHP-TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH------------------HDRVVSLSLCSSKDCFISGSLDR  143 (332)
Q Consensus        83 ~~~~~~-~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h------------------~~~V~~v~~~~~~~~l~s~s~Dg  143 (332)
                      +|+|++ ..+++++   .|++| +||+.+++.++.+.+|                  ...|++++|+|++++|+|++.||
T Consensus       158 ~~sp~~~~~l~~g~---~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg  233 (902)
T 2oaj_A          158 QWNPRDIGTVLISY---EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN  233 (902)
T ss_dssp             EEETTEEEEEEEEC---SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC
T ss_pred             EEccCCCCEEEEEe---CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC
Confidence            999975 4555554   37899 9999999988888766                  57899999999999999999999


Q ss_pred             cEEEEeCCCceEEEEEEe-----c-------------C--ceeEEE----------------------------------
Q 020021          144 TVLLWDQRAEKCQGLLRV-----Q-------------G--RPAAAY----------------------------------  169 (332)
Q Consensus       144 ~i~iWd~~~~~~~~~~~~-----~-------------~--~~~~~~----------------------------------  169 (332)
                      +|++||+++++++.....     +             .  .....+                                  
T Consensus       234 ~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~  313 (902)
T 2oaj_A          234 SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYT  313 (902)
T ss_dssp             CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEEC
T ss_pred             eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCC
Confidence            999999876554321000     0             0  000000                                  


Q ss_pred             --------------------------------------------------------------------------------
Q 020021          170 --------------------------------------------------------------------------------  169 (332)
Q Consensus       170 --------------------------------------------------------------------------------  169 (332)
                                                                                                      
T Consensus       314 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~  393 (902)
T 2oaj_A          314 PRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLF  393 (902)
T ss_dssp             CCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGS
T ss_pred             CCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------cCCC-eEEEEEeCCEEEEEECccCCCCCee
Q 020021          170 --------------------------------------------------DDQG-LVFAVAFGGYIRMFDARKYEKGPFD  198 (332)
Q Consensus       170 --------------------------------------------------~~~~-~~~~~~~~~~i~vwd~~~~~~~~~~  198 (332)
                                                                        ++++ .+++++.|++||+||+.........
T Consensus       394 ~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~  473 (902)
T 2oaj_A          394 PQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNA  473 (902)
T ss_dssp             CGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTB
T ss_pred             CCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCc
Confidence                                                              0001 1222223455555554432111000


Q ss_pred             EEE--ec-----CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe--------------------------------
Q 020021          199 IFS--VG-----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--------------------------------  239 (332)
Q Consensus       199 ~~~--~~-----~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~--------------------------------  239 (332)
                      .+.  +.     +|...|.+++|||||++||+++.||+|++||+.+++                                
T Consensus       474 ~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (902)
T 2oaj_A          474 SFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDV  553 (902)
T ss_dssp             CEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEEC
T ss_pred             eEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccc
Confidence            111  11     455679999999999999999999999999997663                                


Q ss_pred             -------------EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE--E---ec-CCCCCCceEE
Q 020021          240 -------------LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA--S---WM-SFDTEPPVIK  300 (332)
Q Consensus       240 -------------~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~--~---~~-~~~~~v~~l~  300 (332)
                                   ++..+.   .|...|.+++||||| +||+|+.|++|+|||+.++..+.  .   +. .|...|++|+
T Consensus       554 ~~~~~~~~~~g~~~~~~l~---~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~  629 (902)
T 2oaj_A          554 RDRAPTGVRQGFMPSTAVH---ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIE  629 (902)
T ss_dssp             GGGCCTTCSEEEEEEEEEC---CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEE
T ss_pred             cccCCCCCCCccceeEEEE---cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEE
Confidence                         122232   477899999999999 99999999999999998776653  2   33 7888999999


Q ss_pred             eC-----CC---eeEEEeccce--EEEecc
Q 020021          301 WT-----PG---SLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       301 ~s-----p~---~~~l~t~~~d--~~~w~~  320 (332)
                      |+     ||   +++|++|+.|  +++|+.
T Consensus       630 Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          630 FVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             EEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            99     88   4899999987  888886

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-35  Score=308.36  Aligned_cols=282  Identities=16%  Similarity=0.217  Sum_probs=238.6

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEE---
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS---  107 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d---  107 (332)
                      .+|.+.|.+++|+|+++++++++.|++|++||+.++.++..+.+|...|..++|+|++..+++++.   |+.+++||   
T Consensus       837 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~---dg~v~vw~~~~  913 (1249)
T 3sfz_A          837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD---DQTIRVWETKK  913 (1249)
T ss_dssp             CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEEHHH
T ss_pred             CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeC---CCeEEEEEccc
Confidence            489999999999999999999999999999999999999999999989999999999888877754   44555555   


Q ss_pred             ----------------------------------------------------------------------------ccCC
Q 020021          108 ----------------------------------------------------------------------------LHDN  111 (332)
Q Consensus       108 ----------------------------------------------------------------------------~~~~  111 (332)
                                                                                                  +.++
T Consensus       914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~  993 (1249)
T 3sfz_A          914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN  993 (1249)
T ss_dssp             HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred             cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence                                                                                        4455


Q ss_pred             ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec-CceeEEEcCCCeEEEEEeCCEEEEEECc
Q 020021          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAFGGYIRMFDAR  190 (332)
Q Consensus       112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~vwd~~  190 (332)
                      +....+.+|...|++++|+|++++|++++.||+|++||+.++.+....... ......+.+++.+++++.++.|++||+.
T Consensus       994 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A          994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp             SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETT
T ss_pred             ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECC
Confidence            556677889999999999999999999999999999999988765433222 2335567788889999999999999997


Q ss_pred             cCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021          191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs  270 (332)
                      ..+.  .  ....++...+.+++|+|||+++++++.||+|++||+.+++.+..+.   .|...+.+++|+|||++|++|+
T Consensus      1074 ~~~~--~--~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~---~h~~~v~~~~~s~dg~~lat~~ 1146 (1249)
T 3sfz_A         1074 TGRI--E--RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK---GHNGCVRCSAFSLDGILLATGD 1146 (1249)
T ss_dssp             TTCC--C--EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC---CCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCce--e--EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec---cCCCcEEEEEECCCCCEEEEEe
Confidence            6532  1  2234566789999999999999999999999999999888776655   4667889999999999999999


Q ss_pred             CCCcEEEEECCCCceEEEe---------cCCCCCCceEEeCCCeeEEEeccceEEEecccc
Q 020021          271 GDGSVYAWSVRSGKEVASW---------MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL  322 (332)
Q Consensus       271 ~Dg~i~vWd~~~~~~~~~~---------~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~  322 (332)
                      .||+|++||+.+++.+..+         ..|...|++++|+||+++++++++.+++|+...
T Consensus      1147 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~ 1207 (1249)
T 3sfz_A         1147 DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVAT 1207 (1249)
T ss_dssp             TTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSS
T ss_pred             CCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCC
Confidence            9999999999998877655         578889999999999999999988899999754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.2e-34  Score=264.78  Aligned_cols=276  Identities=18%  Similarity=0.365  Sum_probs=227.3

Q ss_pred             ccceeEeccCCCcE-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021           24 MEVGMSFRDYNGRI-SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (332)
Q Consensus        24 ~~~~~~l~~h~~~I-~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~  102 (332)
                      .+..+.|.+|.+.| .++  +++|++|++|+.|++|++||+.+++++..+.+|...|..++++  +..+++++.   |++
T Consensus       108 ~~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~---dg~  180 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGST---DRT  180 (445)
T ss_dssp             CCCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEET---TSC
T ss_pred             cceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeC---CCe
Confidence            45678899999875 554  4568999999999999999999999999999999999998887  557777654   889


Q ss_pred             eEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeEEEEEe
Q 020021          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVAF  180 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  180 (332)
                      |++||+.+++.+..+.+|...|.++.|+  ++.+++++.||+|++||++++++...+..+...  ...+ .+..+++++.
T Consensus       181 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~  257 (445)
T 2ovr_B          181 LKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAY  257 (445)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEET
T ss_pred             EEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-CCCEEEEEcC
Confidence            9999999999999999999999999995  578999999999999999998887777654332  2333 4556777778


Q ss_pred             CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s  260 (332)
                      |+.|++||++..+    ......++...+.++.+  ++.++++++.||.|++||+.+++.+..+.   .+...+..+.  
T Consensus       258 dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~--  326 (445)
T 2ovr_B          258 DFMVKVWDPETET----CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT---GHQSLTSGME--  326 (445)
T ss_dssp             TSCEEEEEGGGTE----EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC---CCCSCEEEEE--
T ss_pred             CCEEEEEECCCCc----EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc---CCcccEEEEE--
Confidence            9999999987642    23344566677888888  89999999999999999999999887765   3445555554  


Q ss_pred             CCCCEEEEEcCCCcEEEEECCCCceEEEecC---CCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          261 PEGMFVISGSGDGSVYAWSVRSGKEVASWMS---FDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       261 pdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                      ++++++++|+.||.|++||+.+++.+..+..   |...|.+++|++  .++++++.|  +++|+...
T Consensus       327 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~  391 (445)
T 2ovr_B          327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKT  391 (445)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETTT
T ss_pred             EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC--CEEEEEeCCCeEEEEECCC
Confidence            4778999999999999999999999888875   788899999964  688888776  88888754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.3e-35  Score=269.06  Aligned_cols=254  Identities=12%  Similarity=0.159  Sum_probs=210.6

Q ss_pred             cceeEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-------eeeEEeeecccceeEEEEccCCC-EEEEec
Q 020021           25 EVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPT-TVIYSS   95 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s   95 (332)
                      +....+.+|.+.|.+++|+| ++++|++|+.|++|+|||+.++       +++..+.+|...|..++|+|++. .+++++
T Consensus        72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~  151 (402)
T 2aq5_A           72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG  151 (402)
T ss_dssp             TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred             CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence            34556889999999999999 8999999999999999999987       66788899999999999999984 666665


Q ss_pred             CCCCCceeEEEEccCCceEEEe--ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCC
Q 020021           96 KNGWDESLRLLSLHDNKYLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG  173 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~--~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  173 (332)
                      .   |+.|++||+.+++.+..+  .+|...|.+++|+|++++|++++.|++|++||++++++...+..            
T Consensus       152 ~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------  216 (402)
T 2aq5_A          152 C---DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR------------  216 (402)
T ss_dssp             T---TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC------------
T ss_pred             C---CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc------------
Confidence            3   889999999999999999  89999999999999999999999999999999988765433210            


Q ss_pred             eEEEEEeCCEEEEEECccCCCCCeeEEEecCCC-CCceeEEEcCCCCEEEEE---cCCCeEEEEEccCCeE-eEEeeecC
Q 020021          174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI-SDANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTL-LSTYNVKP  248 (332)
Q Consensus       174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~v~~s~dg~~l~~~---~~dg~i~i~d~~~~~~-~~~~~~~~  248 (332)
                                                    ++. ..+..++|+|+|++++++   +.|+.|++||+.+++. +.....  
T Consensus       217 ------------------------------~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~--  264 (402)
T 2aq5_A          217 ------------------------------PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL--  264 (402)
T ss_dssp             ------------------------------SSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC--
T ss_pred             ------------------------------CCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec--
Confidence                                          111 236788999999999999   8999999999987654 222221  


Q ss_pred             CCCCcceEEEECCCCCEEE-EEcCCCcEEEEECCCCce-EEEecC--CCCCCceEEeCCCeeEEEeccceEEEecccccc
Q 020021          249 VSRNSTLEASFSPEGMFVI-SGSGDGSVYAWSVRSGKE-VASWMS--FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK  324 (332)
Q Consensus       249 ~~~~~~~~v~~spdg~~l~-sgs~Dg~i~vWd~~~~~~-~~~~~~--~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~  324 (332)
                      .+...+..++|+|++++|+ +|+.||.|++||+.+++. +..+..  |...+.+++|+|++.++++++..+++|++....
T Consensus       265 ~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERK  344 (402)
T ss_dssp             CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEETTE
T ss_pred             cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCCCc
Confidence            2445678899999999996 566899999999998874 444433  458899999999999999888889999886544


Q ss_pred             c
Q 020021          325 L  325 (332)
Q Consensus       325 ~  325 (332)
                      +
T Consensus       345 ~  345 (402)
T 2aq5_A          345 C  345 (402)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2e-34  Score=267.54  Aligned_cols=269  Identities=14%  Similarity=0.293  Sum_probs=219.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~  110 (332)
                      .+|...|.+++|  ++++|++|+.|++|++||+.+++++..+.+|...|..+++  ++..+++++.   |++|++||+.+
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~---dg~i~vwd~~~  202 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS---DSTVRVWDVNT  202 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEET---TSCEEEEESSS
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcC---CCeEEEEECCC
Confidence            467788999877  6899999999999999999999999999999988988877  6778887764   88999999999


Q ss_pred             CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE---EEEecCce--eEEEcCCCeEEEEEeCCEEE
Q 020021          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG---LLRVQGRP--AAAYDDQGLVFAVAFGGYIR  185 (332)
Q Consensus       111 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~i~  185 (332)
                      ++.+..+.+|...|.+++|++  +.+++++.||+|++||++++....   .+..+...  ...+ .+..+++++.|+.|+
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~  279 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIK  279 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEE
T ss_pred             CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEE
Confidence            999999999999999999974  699999999999999998776542   22222222  2233 445666677799999


Q ss_pred             EEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (332)
Q Consensus       186 vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~  265 (332)
                      +||++..+    ......++...+.++.+  ++.++++++.||.|++||+.+++.+..+.   .|...+.+++|  ++++
T Consensus       280 vwd~~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~--~~~~  348 (435)
T 1p22_A          280 VWNTSTCE----FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNKR  348 (435)
T ss_dssp             EEETTTCC----EEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEC--CSSE
T ss_pred             EEECCcCc----EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe---CCcCcEEEEEe--cCCE
Confidence            99997643    12334456667777777  57899999999999999999999888776   45677877877  8999


Q ss_pred             EEEEcCCCcEEEEECCCCc---------eEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          266 VISGSGDGSVYAWSVRSGK---------EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       266 l~sgs~Dg~i~vWd~~~~~---------~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                      |++|+.||.|++||+.+++         .+..+..|...|.+++|  ++.++++++.|  +++|+...
T Consensus       349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred             EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence            9999999999999997765         78888999999999999  67789999877  88887644

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.3e-34  Score=264.61  Aligned_cols=289  Identities=18%  Similarity=0.342  Sum_probs=231.2

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEcc--CCCEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS--HPTTV   91 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~   91 (332)
                      +.+|+  +.+.+....+.+|.+.|.+++|+|++ +|++|+.|++|++||+.+++++..+..|...|..++|.+  ++..+
T Consensus       144 i~vwd--~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l  220 (464)
T 3v7d_B          144 IRVYD--SINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI  220 (464)
T ss_dssp             EEEEE--TTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEE
T ss_pred             EEEEE--CCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEE
Confidence            44444  24456778899999999999999988 999999999999999999999999999999999999985  55567


Q ss_pred             EEecCCCCCceeEEEEccCCc-----------------------eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEE
Q 020021           92 IYSSKNGWDESLRLLSLHDNK-----------------------YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW  148 (332)
Q Consensus        92 ~~~s~~g~d~~v~v~d~~~~~-----------------------~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iW  148 (332)
                      ++++.   |+++++||+.++.                       .+..+.+|...|.++  +++++++++++.|++|++|
T Consensus       221 ~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vw  295 (464)
T 3v7d_B          221 VTGSR---DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVW  295 (464)
T ss_dssp             EEEET---TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEE
T ss_pred             EEEcC---CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEE
Confidence            76654   8899999998765                       256788999999987  5678999999999999999


Q ss_pred             eCCCceEEEEEEecC--ceeEEEcCCC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc
Q 020021          149 DQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT  225 (332)
Q Consensus       149 d~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~  225 (332)
                      |++++++...+..+.  .....+++++ .+++++.|+.|++||++..+    ......+|...+.+++++  +.++++++
T Consensus       296 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~--~~~l~s~s  369 (464)
T 3v7d_B          296 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLS--DKFLVSAA  369 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEC--SSEEEEEE
T ss_pred             ECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCcEEEEEEc--CCEEEEEe
Confidence            999998877765433  3345666765 45556678999999997632    234556677788888887  58999999


Q ss_pred             CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEE-ecCCCCCCceEEeCCC
Q 020021          226 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPG  304 (332)
Q Consensus       226 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~-~~~~~~~v~~l~~sp~  304 (332)
                      .||.|++||+.++.......    +...+..++|+|+++++++|+ ||.|++||+.+++.+.. +..|...|.+++|+ +
T Consensus       370 ~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~  443 (464)
T 3v7d_B          370 ADGSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-G  443 (464)
T ss_dssp             TTSEEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-T
T ss_pred             CCCcEEEEECCCCceeeeec----CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-C
Confidence            99999999999887655443    344556789999999999998 89999999999998876 67788899999997 3


Q ss_pred             eeEEEeccce--EEEecccc
Q 020021          305 SLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       305 ~~~l~t~~~d--~~~w~~~~  322 (332)
                      ..++++++.+  ..+|.++.
T Consensus       444 ~~l~~~~~~~g~~~i~~ldf  463 (464)
T 3v7d_B          444 KTLVAAVEKDGQSFLEILDF  463 (464)
T ss_dssp             TEEEEEEEETTEEEEEEEEC
T ss_pred             CEEEEEEEeCCeEEEEEeec
Confidence            3455555444  55565553

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.8e-34  Score=254.77  Aligned_cols=279  Identities=14%  Similarity=0.159  Sum_probs=224.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~  112 (332)
                      |.++|.+++|+|||++++++..++.+.+|+............|...|..++|++++..+++++    |+.+++||+.+++
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----dg~i~iw~~~~~~   83 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG----KGCVKVWDISHPG   83 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC----BSEEEEEETTSTT
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC----CCeEEEEECCCCC
Confidence            567899999999999999988888887776655444444557888999999999999888764    7899999998765


Q ss_pred             e---EEEee--cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceE--EEEEEecC--ceeEEEcCCCe-EEEEEeCC
Q 020021          113 Y---LRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC--QGLLRVQG--RPAAAYDDQGL-VFAVAFGG  182 (332)
Q Consensus       113 ~---~~~~~--~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~--~~~~~~~~--~~~~~~~~~~~-~~~~~~~~  182 (332)
                      .   +..+.  +|...|.+++|+|++++|++++.|+.|++||+++++.  ...+..+.  .....+.+++. +++++.++
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  163 (337)
T 1gxr_A           84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG  163 (337)
T ss_dssp             CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC
Confidence            3   33333  7999999999999999999999999999999988763  33333222  23456677665 44555689


Q ss_pred             EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      .|++||++..+    .......+...+..++|+|+++++++++.||.|++||+.+++.+..+.    +...+..++|+|+
T Consensus       164 ~v~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~  235 (337)
T 1gxr_A          164 NIAVWDLHNQT----LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPT  235 (337)
T ss_dssp             CEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTT
T ss_pred             cEEEEeCCCCc----eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECCC
Confidence            99999997532    233445566789999999999999999999999999999998877664    3466888999999


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecccccc
Q 020021          263 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSK  324 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~  324 (332)
                      +++|++++.|+.|++||+.+++. ..+..|...+.+++|+|++++|++++.|  +++|+....+
T Consensus       236 ~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          236 GEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence            99999999999999999988764 4677889999999999999999999877  8888765543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8e-34  Score=256.87  Aligned_cols=284  Identities=12%  Similarity=0.165  Sum_probs=206.0

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      ..++.+|.+.|.+++|+|||++|++|+.|+ ++|||+.+++.+.....+  .+..+++.+++..+++.+  +.|++|++|
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~d~~v~iW   86 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVT--GVKEVVHIW   86 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEEC--SSTTEEEEE
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEE--CCccEEEEE
Confidence            345689999999999999999999988775 799999988776554332  477788888888776543  237899999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCc-eEEEEEEecCceeEEEcCCCeEEEE--EeCCE
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFAV--AFGGY  183 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  183 (332)
                      |+.+++.+..+. |...|.++.++++.  ++.+ .|+.|++||+.++ +....+.. ......+.+ ..++..  ..+|.
T Consensus        87 d~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~-~~la~~sg~~~g~  160 (355)
T 3vu4_A           87 DDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSN-GLLVYSNEFNLGQ  160 (355)
T ss_dssp             ETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEET-TEEEEEESSCTTC
T ss_pred             ECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEc-cEEEEeCCCcCcE
Confidence            999999988887 67799999998754  3333 4889999999887 55444433 112233334 333333  35799


Q ss_pred             EEEEECccCCC------CC-----ee-EEEecCCCCCceeEEEcCCCCEEEEEcCCCe-EEEEEccCCeEeEEeeecCCC
Q 020021          184 IRMFDARKYEK------GP-----FD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVS  250 (332)
Q Consensus       184 i~vwd~~~~~~------~~-----~~-~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~  250 (332)
                      |++||++....      ..     .. ...+.+|...+.+++|+|||+++++++.|++ |++||+.+++.+..+... .|
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g-~h  239 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG-LD  239 (355)
T ss_dssp             EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT-TC
T ss_pred             EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-CC
Confidence            99999986420      00     00 2345678889999999999999999999998 999999999998877521 25


Q ss_pred             CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE--EEec---------------------CCCCCCceEEeCCCeeE
Q 020021          251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV--ASWM---------------------SFDTEPPVIKWTPGSLM  307 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~--~~~~---------------------~~~~~v~~l~~sp~~~~  307 (332)
                      ...+.+++|+|||++|++++.|++|++||+.++...  ..+.                     ........++|+||++.
T Consensus       240 ~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~  319 (355)
T 3vu4_A          240 RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL  319 (355)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE
T ss_pred             CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCE
Confidence            678999999999999999999999999999765321  1110                     11122477999999999


Q ss_pred             EEeccce--EEEecccc
Q 020021          308 FVTGSSE--LSFWIPDL  322 (332)
Q Consensus       308 l~t~~~d--~~~w~~~~  322 (332)
                      +++++.|  +.+|+...
T Consensus       320 l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          320 VVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             EEEETTTTEEEEEEEEE
T ss_pred             EEEEeCCCeEEEEEEEc
Confidence            9998877  66666433

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.2e-33  Score=258.35  Aligned_cols=271  Identities=15%  Similarity=0.190  Sum_probs=203.1

Q ss_pred             eeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEE
Q 020021           13 SLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI   92 (332)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (332)
                      ++.||+.--+.......+.+|...|++|+|+|+|++||+|+.|++|+|||+.+++++..+.+|...+..+++  ++..++
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~  203 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILS  203 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEE
Confidence            356665433333333345688999999999999999999999999999999999999999999877776555  566777


Q ss_pred             EecCCCCCceeEEEEccC-CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEE----EEEEec--Cce
Q 020021           93 YSSKNGWDESLRLLSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ----GLLRVQ--GRP  165 (332)
Q Consensus        93 ~~s~~g~d~~v~v~d~~~-~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~----~~~~~~--~~~  165 (332)
                      +++.   |+.+++||... ...+..+.+|...+..+.++|+++++++++.|+.+++||..+++..    ......  ...
T Consensus       204 sgs~---d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~  280 (420)
T 4gga_A          204 SGSR---SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK  280 (420)
T ss_dssp             EEET---TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEE
T ss_pred             EEeC---CCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCcee
Confidence            7654   88999999876 4467789999999999999999999999999999999998765432    111111  123


Q ss_pred             eEEEcC-CCeEEEEE---eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc--CCCeEEEEEccCCe
Q 020021          166 AAAYDD-QGLVFAVA---FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRGT  239 (332)
Q Consensus       166 ~~~~~~-~~~~~~~~---~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~--~dg~i~i~d~~~~~  239 (332)
                      ...+.+ ...+++++   .|++|++||++....    ..... ....+..+.++|+++.+++++  .|+.|++||+.+++
T Consensus       281 ~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~----~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~  355 (420)
T 4gga_A          281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA  355 (420)
T ss_dssp             EEEECTTCTTEEEEEECTTTCEEEEEETTTTEE----EEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred             eeeeCCCcccEEEEEeecCCCEEEEEeCCcccc----ceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence            345555 33444433   379999999976431    11221 224678899999999888764  78999999999999


Q ss_pred             EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCC
Q 020021          240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP  296 (332)
Q Consensus       240 ~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v  296 (332)
                      ++.++.   .|...|.+++|+|||++|+|||.||+|+|||+.+.........+...+
T Consensus       356 ~v~~l~---gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~  409 (420)
T 4gga_A          356 KVAELK---GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASA  409 (420)
T ss_dssp             EEEEEC---CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------
T ss_pred             EEEEEc---CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCc
Confidence            988876   567899999999999999999999999999997765554444444333

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.5e-34  Score=258.87  Aligned_cols=245  Identities=18%  Similarity=0.273  Sum_probs=198.9

Q ss_pred             CCCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEcc-CCCEEEEecCCCCCceeEEEE
Q 020021           33 YNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLS  107 (332)
Q Consensus        33 h~~~I~~i~~s~d----g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~v~v~d  107 (332)
                      |...|.+++|+|+    +++|++|+.|++|++||+.+++++..+..|...|..++|+| ++..+++++.   |+.|++||
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~---dg~i~iwd  144 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK---DHALRLWN  144 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET---TSCEEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC---CCeEEEEE
Confidence            6688999999999    67999999999999999999999999999999999999999 8888888764   78999999


Q ss_pred             ccCCceEEEe---ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE------------------------
Q 020021          108 LHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR------------------------  160 (332)
Q Consensus       108 ~~~~~~~~~~---~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~------------------------  160 (332)
                      +.+++.+..+   .+|...|.+++|+|++++|++++.||.|++||+++++....+.                        
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (366)
T 3k26_A          145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF  224 (366)
T ss_dssp             TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred             eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence            9999988888   7899999999999999999999999999999998765432111                        


Q ss_pred             ------ecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCC----------CeeEEEecCCCCCceeEEEcCC--CCEEE
Q 020021          161 ------VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG----------PFDIFSVGGDISDANVVKFSND--GRLML  222 (332)
Q Consensus       161 ------~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~----------~~~~~~~~~~~~~v~~v~~s~d--g~~l~  222 (332)
                            ........+. +..+++++.++.|++||++.....          ........++...+..++|+|+  |++++
T Consensus       225 ~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~  303 (366)
T 3k26_A          225 STRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA  303 (366)
T ss_dssp             EECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred             ccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence                  0112234444 456666677999999998764320          0123344456678899999999  99999


Q ss_pred             EEcCCCeEEEEEccCCeEe----EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          223 LTTMEGHIHVLDSFRGTLL----STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       223 ~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      +++.||.|++||+.+++..    ..+..+ .+...+..++|+|++++|++++.||.|++||+.+
T Consensus       304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHH-KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EECTTSCEEEEECCSSSGGGCEEEEECCT-TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEecCCcEEEEECCCCCCccccceEEccc-ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            9999999999999887543    233321 1257889999999999999999999999999853

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-35  Score=279.59  Aligned_cols=290  Identities=13%  Similarity=0.125  Sum_probs=200.3

Q ss_pred             eEeccCCCcEEEEEECCCC---------CEEEE-------------------EeCCCcEEEEEcCCCeee----EEeeec
Q 020021           28 MSFRDYNGRISSMDFHKSS---------SYLVT-------------------ASDDESIRLYDVTAATCL----KTINSK   75 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg---------~~l~t-------------------gs~D~tv~iwd~~~~~~~----~~~~~~   75 (332)
                      .++. +.+.|.+|+|+|++         ++||+                   ++.|++|+|||+.++++.    .++..|
T Consensus       128 ~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~  206 (524)
T 2j04_B          128 FIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS  206 (524)
T ss_dssp             EEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEEC
T ss_pred             EEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEec
Confidence            3444 67889999999876         45555                   568899999999877653    345666


Q ss_pred             ccceeEEEEccC------CCEEEEecCCCCCceeEEEEccCCce-----------EEEeecccccEEEEEecCCCCeEEE
Q 020021           76 KYGVDLVCFTSH------PTTVIYSSKNGWDESLRLLSLHDNKY-----------LRYFKGHHDRVVSLSLCSSKDCFIS  138 (332)
Q Consensus        76 ~~~v~~~~~~~~------~~~~~~~s~~g~d~~v~v~d~~~~~~-----------~~~~~~h~~~V~~v~~~~~~~~l~s  138 (332)
                      ...|..++|+|+      +..+++++.   |++|++||+..+..           ...+.+|...|++++|+++ ..|++
T Consensus       207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~---DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~las  282 (524)
T 2j04_B          207 FGEVWDLKWHEGCHAPHLVGCLSFVSQ---EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVC  282 (524)
T ss_dssp             CCSEEEEEECSSCCCSSSSCEEEEEET---TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEE
T ss_pred             CCcEEEEEECCCCCCCCCCceEEEEec---CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEE
Confidence            678999999997      346666653   89999999976532           3478899999999999986 48999


Q ss_pred             eeCCCcEEEEeCCCce-EEEEEEecCc--eeE--EEcCCC--eEEEEEeCCEEEEEECccCCCCCeeEEEecCCC--CCc
Q 020021          139 GSLDRTVLLWDQRAEK-CQGLLRVQGR--PAA--AYDDQG--LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI--SDA  209 (332)
Q Consensus       139 ~s~Dg~i~iWd~~~~~-~~~~~~~~~~--~~~--~~~~~~--~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~--~~v  209 (332)
                      |+.||+|++||++++. +...+..+..  ..+  .+.+++  .+++++.|++|++||++..+..  ..+.  ++.  ..+
T Consensus       283 gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~--~~~~--~~~~~~~v  358 (524)
T 2j04_B          283 GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT--KTTV--SRFRGSNL  358 (524)
T ss_dssp             EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH--CEEE--EECSCCSC
T ss_pred             EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc--cccc--cccccCcc
Confidence            9999999999998653 3333443332  223  345554  4566677999999999864321  1111  122  247


Q ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe
Q 020021          210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW  289 (332)
Q Consensus       210 ~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~  289 (332)
                      .+++|+|+++.+++++.|++|++||++++..+..+.   .|...|.+++|||+|++|++|+.||+|++||+..+ .+...
T Consensus       359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~---gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~  434 (524)
T 2j04_B          359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV---SRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGI  434 (524)
T ss_dssp             CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE---ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC
T ss_pred             cceEeCCCcCeEEEeCCCCcEEEEECcccccceeee---cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hcccc
Confidence            789999999999999999999999999988766665   46788999999999999999999999999998653 32221


Q ss_pred             cC-----CCCCCceEEeCCCeeEEEeccceEEEeccc--cccccccccc
Q 020021          290 MS-----FDTEPPVIKWTPGSLMFVTGSSELSFWIPD--LSKLGAYVGR  331 (332)
Q Consensus       290 ~~-----~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~--~~~~~~~~~~  331 (332)
                      ..     +...+..++|+|++..+.. ..+..+|.++  ...+..+.||
T Consensus       435 ~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~~~~~~~~~~g~~~~~l~gh  482 (524)
T 2j04_B          435 KNSSATQKSLRLWKWDYSIKDDKYRI-DSSYEVYPLTVNDVSKAKIDAH  482 (524)
T ss_dssp             ------CCCCEEEECBCCSSSCEEEE-CCCCCCCC-------------C
T ss_pred             ccCccceeeeEEEEeccCCCCCeEEc-cCCceecccccCCcceeeecCC
Confidence            11     1113568999999985533 3345556554  3334444443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-34  Score=285.21  Aligned_cols=248  Identities=14%  Similarity=0.182  Sum_probs=203.7

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC--CCeeeEEeeecccceeEEEEccC--CCEEEEecCCCCCce
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDES  102 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g~d~~  102 (332)
                      ...+.+|.++|++++|+|++++|++|+.|++|+|||+.  +++++..+.+|...|..++|+++  +..+++++.   |+.
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~---Dg~   78 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---DGK   78 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET---TSC
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC---CCe
Confidence            45789999999999999999999999999999999998  55777888899999999999988  788888764   889


Q ss_pred             eEEEEccCCc--eEEEeecccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021          103 LRLLSLHDNK--YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  178 (332)
Q Consensus       103 v~v~d~~~~~--~~~~~~~h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      |++||+.+++  .+..+.+|...|++++|+|+  ++.|++++.||+|++||++++.......                  
T Consensus        79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~------------------  140 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------------------  140 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE------------------
T ss_pred             EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE------------------
Confidence            9999999987  67888999999999999999  9999999999999999997653211110                  


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC-------------CCCEEEEEcCCCeEEEEEccCCe----Ee
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-------------DGRLMLLTTMEGHIHVLDSFRGT----LL  241 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~-------------dg~~l~~~~~dg~i~i~d~~~~~----~~  241 (332)
                                             ..++...+.+++|+|             ++.++++++.||.|++||+.++.    ..
T Consensus       141 -----------------------~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~  197 (753)
T 3jro_A          141 -----------------------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (753)
T ss_dssp             -----------------------EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             -----------------------eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence                                   112334567777777             68999999999999999998773    33


Q ss_pred             EEeeecCCCCCcceEEEECCC---CCEEEEEcCCCcEEEEECCCCc-----eEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          242 STYNVKPVSRNSTLEASFSPE---GMFVISGSGDGSVYAWSVRSGK-----EVASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~spd---g~~l~sgs~Dg~i~vWd~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      ..+.   .|...+.+++|+|+   +++|++|+.||+|++||+.+++     .+.....|...+++++|+|+++++++++.
T Consensus       198 ~~~~---~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  274 (753)
T 3jro_A          198 STLE---GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (753)
T ss_dssp             EEEC---CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred             eeec---CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence            3333   56788999999999   9999999999999999998864     23334568889999999999999999988


Q ss_pred             e--EEEeccc
Q 020021          314 E--LSFWIPD  321 (332)
Q Consensus       314 d--~~~w~~~  321 (332)
                      |  +.+|+..
T Consensus       275 Dg~I~vwd~~  284 (753)
T 3jro_A          275 DNKVTLWKEN  284 (753)
T ss_dssp             SSCEECCBCC
T ss_pred             CCEEEEEecC
Confidence            7  7777765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-32  Score=253.21  Aligned_cols=255  Identities=17%  Similarity=0.247  Sum_probs=204.3

Q ss_pred             cceeEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           25 EVGMSFRD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        25 ~~~~~l~~-h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      +....+.. |.+.|.+++|+|++++|++|+.|++|++||+.+++.+..+..|...|..++|  ++..+++++.   |+.|
T Consensus       124 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---dg~i  198 (401)
T 4aez_A          124 SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR---SGAI  198 (401)
T ss_dssp             CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEET---TSEE
T ss_pred             cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcC---CCCE
Confidence            34444544 8999999999999999999999999999999999999999999999999988  4567777754   8899


Q ss_pred             EEEEcc-CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCC-CeEEEEE
Q 020021          104 RLLSLH-DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQ-GLVFAVA  179 (332)
Q Consensus       104 ~v~d~~-~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~  179 (332)
                      ++||+. .+..+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+..+.  .....+++. ..+++++
T Consensus       199 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~  278 (401)
T 4aez_A          199 HHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG  278 (401)
T ss_dssp             EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred             EEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEe
Confidence            999998 566788999999999999999999999999999999999999888776664332  345667764 4566555


Q ss_pred             e---CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE--cCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021          180 F---GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT--TMEGHIHVLDSFRGTLLSTYNVKPVSRNST  254 (332)
Q Consensus       180 ~---~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  254 (332)
                      .   |+.|++||++...  ....+.   +...+..++|+|++++++++  +.||.|++||+.+++........ .|...+
T Consensus       279 ~gs~d~~i~i~d~~~~~--~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-~h~~~v  352 (401)
T 4aez_A          279 GGTMDKQIHFWNAATGA--RVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-AHDTRV  352 (401)
T ss_dssp             CCTTTCEEEEEETTTCC--EEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-CCSSCC
T ss_pred             cCCCCCEEEEEECCCCC--EEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-CCCCCE
Confidence            3   8999999997643  222222   33578999999999999994  48999999999987766554432 466788


Q ss_pred             eEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec
Q 020021          255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM  290 (332)
Q Consensus       255 ~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~  290 (332)
                      ..++|+||+++|++++.||.|++||+.+++.+....
T Consensus       353 ~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          353 LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             CEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence            999999999999999999999999999988776543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.3e-33  Score=272.19  Aligned_cols=247  Identities=18%  Similarity=0.271  Sum_probs=200.4

Q ss_pred             ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      ..+.+.+|...|.+++|+|++++|+||+.|++|+|||+.++.++..+.+|...|..++|++++..+++++.   |++|++
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---D~~i~i  498 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR---DRTIKL  498 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---TSCEEE
T ss_pred             ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC---CCEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999998865   889999


Q ss_pred             EEccCCceEEEe---ecccccEEEEEecCCC--CeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEE-E
Q 020021          106 LSLHDNKYLRYF---KGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVF-A  177 (332)
Q Consensus       106 ~d~~~~~~~~~~---~~h~~~V~~v~~~~~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~  177 (332)
                      ||+.........   .+|...|.+++|+|++  ..|++++.|++|++||+++.++...+..+.  .....+++++.++ +
T Consensus       499 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s  578 (694)
T 3dm0_A          499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS  578 (694)
T ss_dssp             ECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence            998654433322   4799999999999986  589999999999999999988877665443  3456777777655 4


Q ss_pred             EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC--------
Q 020021          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--------  249 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------  249 (332)
                      ++.|+.|++||++..+    ...... ....+.+++|+|++.++++++ ++.|++||+.+++.+..+.....        
T Consensus       579 g~~Dg~i~iwd~~~~~----~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  652 (694)
T 3dm0_A          579 GGKDGVVLLWDLAEGK----KLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADN  652 (694)
T ss_dssp             EETTSBCEEEETTTTE----EEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------
T ss_pred             EeCCCeEEEEECCCCc----eEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccc
Confidence            5568999999997642    122222 235688999999999877765 56699999999988776642110        


Q ss_pred             --------CCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021          250 --------SRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       250 --------~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                              +...+.+++|||||++|++|+.||+|+||++.
T Consensus       653 ~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             --------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence                    11135678999999999999999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.2e-34  Score=257.84  Aligned_cols=248  Identities=10%  Similarity=0.127  Sum_probs=188.0

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEE-----------eCCCcEEEEEcCCCee-eEEee--------ecccceeEEEEccC
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTA-----------SDDESIRLYDVTAATC-LKTIN--------SKKYGVDLVCFTSH   87 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tg-----------s~D~tv~iwd~~~~~~-~~~~~--------~~~~~v~~~~~~~~   87 (332)
                      ..|.+|...|.+++++  ++.+++|           +.|+++|+|++.+.+. +....        .+...+..++|+|+
T Consensus        67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD  144 (365)
T 4h5i_A           67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE  144 (365)
T ss_dssp             EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred             EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence            3578999999988765  4566655           4688899999875432 22111        12234778999999


Q ss_pred             CCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe--cC--
Q 020021           88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QG--  163 (332)
Q Consensus        88 ~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~--  163 (332)
                      ++.+++++. +.|++|++||+++++.+..+. |...|.+++|+|+|+++++++.|+ +++|+..++........  +.  
T Consensus       145 g~~la~as~-~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~  221 (365)
T 4h5i_A          145 GTVAAIASS-KVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWS  221 (365)
T ss_dssp             SSCEEEEES-CSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEE
T ss_pred             CCEEEEEEC-CCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCC
Confidence            999877653 568999999999999888876 778899999999999999998665 55565556555433221  11  


Q ss_pred             ceeEEEcCCCeEEE-EEeCC----EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC
Q 020021          164 RPAAAYDDQGLVFA-VAFGG----YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  238 (332)
Q Consensus       164 ~~~~~~~~~~~~~~-~~~~~----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~  238 (332)
                      ...+.+++++..++ ++.++    .++.|++............+.++...|++++|||||++|++++.|+.|++||+.++
T Consensus       222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            23456777776554 44554    68889887543333334455677788999999999999999999999999999999


Q ss_pred             eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      +++..+.  ..|...|.+++|||||++|||||.|++|||||+..
T Consensus       302 ~~~~~~~--~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          302 SMSKIFK--QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEEET--TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             cEEEEec--CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9887652  25778999999999999999999999999999964

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.4e-32  Score=273.39  Aligned_cols=295  Identities=17%  Similarity=0.242  Sum_probs=236.5

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY   93 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (332)
                      +.+|+-  ...+..+.+.+|.++|.+++|+|++++|++|+.|++|++||+.+++++..+..|...|..++|+|++..+++
T Consensus        37 v~iwd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  114 (814)
T 3mkq_A           37 VEIWNY--ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS  114 (814)
T ss_dssp             EEEEET--TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             EEEEEC--CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEE
Confidence            444542  345667889999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ecCCCCCceeEEEEccCC-ceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEec---CceeEE
Q 020021           94 SSKNGWDESLRLLSLHDN-KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAA  168 (332)
Q Consensus        94 ~s~~g~d~~v~v~d~~~~-~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~---~~~~~~  168 (332)
                      ++.   |++|++||+.++ .....+.+|...|.+++|+| +++.|++++.||+|++||++++.....+...   ......
T Consensus       115 ~~~---dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~  191 (814)
T 3mkq_A          115 GSD---DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD  191 (814)
T ss_dssp             EET---TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEE
T ss_pred             EcC---CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEE
Confidence            764   789999999887 67788999999999999999 8899999999999999999877665555432   234556


Q ss_pred             EcC--CCe-EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021          169 YDD--QGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       169 ~~~--~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (332)
                      +.+  ++. +++++.++.|++||++...    ......++...+..++|+|+|+++++++.||.|++||..+++.+..+.
T Consensus       192 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  267 (814)
T 3mkq_A          192 YYPLPDKPYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN  267 (814)
T ss_dssp             ECCSTTCCEEEEECTTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee
Confidence            665  554 4445568999999987532    233444566789999999999999999999999999999998887765


Q ss_pred             ecCCCCCcceEEEECCCCC--EEEEEcCCCcEEEEECCCCceEEE-----------------------------------
Q 020021          246 VKPVSRNSTLEASFSPEGM--FVISGSGDGSVYAWSVRSGKEVAS-----------------------------------  288 (332)
Q Consensus       246 ~~~~~~~~~~~v~~spdg~--~l~sgs~Dg~i~vWd~~~~~~~~~-----------------------------------  288 (332)
                         .+...+..++|+|+++  +++++ .|+.+.+|++........                                   
T Consensus       268 ---~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (814)
T 3mkq_A          268 ---VGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDE  343 (814)
T ss_dssp             ---CSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSS
T ss_pred             ---cCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCc
Confidence               3456888999999997  45555 467788998765332111                                   


Q ss_pred             --------ecCCCCCCceEEeCCCeeEEEeccce-EEEeccc
Q 020021          289 --------WMSFDTEPPVIKWTPGSLMFVTGSSE-LSFWIPD  321 (332)
Q Consensus       289 --------~~~~~~~v~~l~~sp~~~~l~t~~~d-~~~w~~~  321 (332)
                              +..+...+.+++|+|+++++++++.+ +.+|+..
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~  385 (814)
T 3mkq_A          344 PLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTAL  385 (814)
T ss_dssp             CBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETT
T ss_pred             cceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECc
Confidence                    12344467899999999988887643 7777753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-32  Score=275.20  Aligned_cols=203  Identities=10%  Similarity=0.155  Sum_probs=163.1

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      ..+|.+.|++++|+|++++||+|+.|++|+|||..+.++...+. |...|..++|++ +..+++++.   |++|++||+.
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~---D~~v~lWd~~   87 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINA---KDTVYVLSLY   87 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEET---TCEEEEEETT
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEEC---cCeEEEEECC
Confidence            35899999999999999999999999999999999888766554 567899999999 777777754   8999999999


Q ss_pred             CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe--------------cCceeEEEcCC--C
Q 020021          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--------------QGRPAAAYDDQ--G  173 (332)
Q Consensus       110 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--------------~~~~~~~~~~~--~  173 (332)
                      +++.+..+. |...|++++|+|++++|++|+.||+|++||++++++. .+..              .......+++.  .
T Consensus        88 ~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~  165 (902)
T 2oaj_A           88 SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG  165 (902)
T ss_dssp             TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred             CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCC
Confidence            999888886 7789999999999999999999999999999988764 2211              12335667774  2


Q ss_pred             eEEEEEeCCEEEEEECccCCCCCeeEEEe----------------cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC
Q 020021          174 LVFAVAFGGYIRMFDARKYEKGPFDIFSV----------------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (332)
Q Consensus       174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~----------------~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~  237 (332)
                      .+++++.++.| +||++..+.  ...+..                ..+...+.+++|+|||+++++++.||.|++||+.+
T Consensus       166 ~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          166 TVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             EEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred             EEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence            45555568999 999976421  111111                11235689999999999999999999999999998


Q ss_pred             CeEeE
Q 020021          238 GTLLS  242 (332)
Q Consensus       238 ~~~~~  242 (332)
                      ++.+.
T Consensus       243 g~~~~  247 (902)
T 2oaj_A          243 GHMIM  247 (902)
T ss_dssp             CCEEE
T ss_pred             CcEEE
Confidence            88765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.5e-32  Score=241.44  Aligned_cols=255  Identities=16%  Similarity=0.196  Sum_probs=197.4

Q ss_pred             eEecHHHHhcccceeE--eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEE
Q 020021           14 LELSEEILQSMEVGMS--FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV   91 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~--l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   91 (332)
                      +++|+.-  +.+..+.  +.+|...|++++|+|++++|++|+.|++|+|||+.++++++.+.+|...+.  ++.+.+..+
T Consensus        47 V~iWd~~--tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~--~~~~~~~~l  122 (318)
T 4ggc_A           47 VYLWSAS--SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG--SLSWNSYIL  122 (318)
T ss_dssp             EEEEETT--TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE--EEEEETTEE
T ss_pred             EEEEECC--CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE--EeecCCCEE
Confidence            5666532  3344444  457889999999999999999999999999999999999999999876655  455566677


Q ss_pred             EEecCCCCCceeEEEEccCC-ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEE----Eec--Cc
Q 020021           92 IYSSKNGWDESLRLLSLHDN-KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQ--GR  164 (332)
Q Consensus        92 ~~~s~~g~d~~v~v~d~~~~-~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~----~~~--~~  164 (332)
                      ++++.   ++.+++|+.... ..+..+.+|...+..+.+++++++|++++.|++|++||+++++.....    ...  ..
T Consensus       123 ~s~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v  199 (318)
T 4ggc_A          123 SSGSR---SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV  199 (318)
T ss_dssp             EEEET---TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCE
T ss_pred             EEEec---CCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCce
Confidence            77754   778999998765 457788999999999999999999999999999999999876532111    111  12


Q ss_pred             eeEEEcC-CCeEEEEE---eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc--CCCeEEEEEccCC
Q 020021          165 PAAAYDD-QGLVFAVA---FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRG  238 (332)
Q Consensus       165 ~~~~~~~-~~~~~~~~---~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~--~dg~i~i~d~~~~  238 (332)
                      ....+.+ ...++..+   .++.|++||.+....     .....+...+..+.|+|++..+++++  .|+.|++||+.++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~  274 (318)
T 4ggc_A          200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  274 (318)
T ss_dssp             EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             EEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence            2333333 33333322   358999999875432     11112345688899999999887654  7999999999999


Q ss_pred             eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCC
Q 020021          239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~  283 (332)
                      +++.++.   .|...|.+++|+|||++|||||.||+|+|||+.+.
T Consensus       275 ~~~~~l~---gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          275 AKVAELK---GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CEEEEEC---CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             cEEEEEc---CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            9998876   56788999999999999999999999999999764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.4e-33  Score=254.24  Aligned_cols=253  Identities=13%  Similarity=0.130  Sum_probs=208.1

Q ss_pred             ccceeEeccCCCcEEEEEECCC----C---CEEEEEeCCCcEEEEEcCCCee-----eEEeeec-----ccceeEEEEc-
Q 020021           24 MEVGMSFRDYNGRISSMDFHKS----S---SYLVTASDDESIRLYDVTAATC-----LKTINSK-----KYGVDLVCFT-   85 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~d----g---~~l~tgs~D~tv~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~-   85 (332)
                      .+....+.+|..+|.+++|+|+    +   ++|++++.|++|++||+.++++     +..+..|     ...|..++|+ 
T Consensus        52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (397)
T 1sq9_A           52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA  131 (397)
T ss_dssp             GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred             CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence            4577889999999999999999    9   9999999999999999998887     8888888     5789999999 


Q ss_pred             ---cCCCE-EEEecCCCCCceeEEEEccC------CceEE-----Eee-------cccccEEEEEecCCCCeEEEeeCCC
Q 020021           86 ---SHPTT-VIYSSKNGWDESLRLLSLHD------NKYLR-----YFK-------GHHDRVVSLSLCSSKDCFISGSLDR  143 (332)
Q Consensus        86 ---~~~~~-~~~~s~~g~d~~v~v~d~~~------~~~~~-----~~~-------~h~~~V~~v~~~~~~~~l~s~s~Dg  143 (332)
                         +++.. +++++.   |+.|++||+..      ++.+.     .+.       .|...|.+++|+|++ .|++++.|+
T Consensus       132 ~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg  207 (397)
T 1sq9_A          132 SNDRLLSHRLVATDV---KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG  207 (397)
T ss_dssp             CC----CEEEEEEET---TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS
T ss_pred             ccCCCCceEEEEEeC---CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC
Confidence               99988 887764   78999999988      66665     774       489999999999999 999999999


Q ss_pred             cEEEEeCCCceEEEEEEe---c---C--ceeEEEcCCCeEE-EEEeC---CEEEEEECccCCCCCeeEEEecC-------
Q 020021          144 TVLLWDQRAEKCQGLLRV---Q---G--RPAAAYDDQGLVF-AVAFG---GYIRMFDARKYEKGPFDIFSVGG-------  204 (332)
Q Consensus       144 ~i~iWd~~~~~~~~~~~~---~---~--~~~~~~~~~~~~~-~~~~~---~~i~vwd~~~~~~~~~~~~~~~~-------  204 (332)
                      .|++||++++++...+..   +   .  .....+++++.++ +++.+   +.|++||++..+    ......+       
T Consensus       208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~----~~~~~~~~~~~~~~  283 (397)
T 1sq9_A          208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE----RIGSLSVPTHSSQA  283 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC----EEEEECBC------
T ss_pred             cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc----ccceeccCcccccc
Confidence            999999999888877765   2   2  3355677766544 45567   899999997642    1233334       


Q ss_pred             ------CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecC---CC---------------CCcceEEEEC
Q 020021          205 ------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---VS---------------RNSTLEASFS  260 (332)
Q Consensus       205 ------~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~---------------~~~~~~v~~s  260 (332)
                            +...+.+++|+|+++++++++.||.|++||+.+++.+..+....   .+               ...+..++|+
T Consensus       284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~  363 (397)
T 1sq9_A          284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL  363 (397)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred             cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence                  66789999999999999999999999999999999888776210   22               6788999999


Q ss_pred             CCC----------CEEEEEcCCCcEEEEECCCCc
Q 020021          261 PEG----------MFVISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       261 pdg----------~~l~sgs~Dg~i~vWd~~~~~  284 (332)
                      |++          ++|++|+.||.|++||+.+++
T Consensus       364 ~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          364 KKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            999          799999999999999998764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.8e-34  Score=263.38  Aligned_cols=269  Identities=12%  Similarity=0.067  Sum_probs=181.1

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeE-----EeeecccceeEEEEcc--------CCCEEEEecC
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK-----TINSKKYGVDLVCFTS--------HPTTVIYSSK   96 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~~~~~s~   96 (332)
                      ...|.+.+....+++++.+|++|+.|++|||||+.++++..     .+.+|...|..++|+|        ++..+++++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence            34566666666677778899999999999999999887643     3568999999999987        5666777654


Q ss_pred             CCCCceeEEEEccCCceEEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeE
Q 020021           97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  175 (332)
Q Consensus        97 ~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (332)
                         |++||+||+.++..+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++...........     .....
T Consensus       165 ---D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~-----~~~~~  236 (393)
T 4gq1_A          165 ---DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV-----KNPWL  236 (393)
T ss_dssp             ---TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C-----SCCCS
T ss_pred             ---CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc-----ccceE
Confidence               9999999999998888899999999999999987 48999999999999999887654332111000     00000


Q ss_pred             EEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEc-CCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC-----
Q 020021          176 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS-NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----  249 (332)
Q Consensus       176 ~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----  249 (332)
                      +..         +...    ........++...+..+.|+ |||+.+++++.|+++++||+..++....+..+..     
T Consensus       237 ~s~---------~~~~----~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~  303 (393)
T 4gq1_A          237 LTL---------NTLP----LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK  303 (393)
T ss_dssp             EEE---------ESGG----GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------
T ss_pred             Eec---------cccc----ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE
Confidence            000         0000    00011122455677888886 8999999999999999999987765544321100     


Q ss_pred             ----------CCCcceEEEECC--CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce-EE
Q 020021          250 ----------SRNSTLEASFSP--EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-LS  316 (332)
Q Consensus       250 ----------~~~~~~~v~~sp--dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d-~~  316 (332)
                                .........|+|  ++.++++|+.||+|++||+.+++.+..+..|..+|.+|+|||||++|++++.+ +.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence                      011112234444  56688899999999999999999888888899999999999999999999887 55


Q ss_pred             Eec
Q 020021          317 FWI  319 (332)
Q Consensus       317 ~w~  319 (332)
                      +|.
T Consensus       384 lvr  386 (393)
T 4gq1_A          384 LTR  386 (393)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.1e-33  Score=248.69  Aligned_cols=249  Identities=15%  Similarity=0.187  Sum_probs=198.3

Q ss_pred             ccCCCcEEEEEECCC---CCEEEEEeCCCcEEEEEcCCCe-eeEEeeecccceeEEE------EccCCCEEEEecCCCCC
Q 020021           31 RDYNGRISSMDFHKS---SSYLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVC------FTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        31 ~~h~~~I~~i~~s~d---g~~l~tgs~D~tv~iwd~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~~~~~s~~g~d  100 (332)
                      .+|.++|.+++|+|+   +++|++|+.|++|++||+.+++ ++..+..|...|..++      |++++..+++++.   |
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~---d  138 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR---D  138 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET---T
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC---C
Confidence            379999999999998   6999999999999999999888 8888999998999885      4678888888764   7


Q ss_pred             ceeEEEEccCCc-eEEEeecccc----cEEEEE----ecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec-CceeEEEc
Q 020021          101 ESLRLLSLHDNK-YLRYFKGHHD----RVVSLS----LCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYD  170 (332)
Q Consensus       101 ~~v~v~d~~~~~-~~~~~~~h~~----~V~~v~----~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~  170 (332)
                      +.|++||+.+++ .+..+..|..    .|.++.    |+|++++|++++.|+.|++||++++++....... ......++
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~  218 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFD  218 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEES
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcC
Confidence            899999999876 6777776655    899998    7889999999999999999999998875544332 23456667


Q ss_pred             C---CC-eEEEEEeCCEEEEEECccCCCCC-eeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccCCe-----
Q 020021          171 D---QG-LVFAVAFGGYIRMFDARKYEKGP-FDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGT-----  239 (332)
Q Consensus       171 ~---~~-~~~~~~~~~~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~-----  239 (332)
                      +   ++ .+++++.++.|++||++...... +......++...+..++|+|+++ ++++++.||.|++||+..+.     
T Consensus       219 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  298 (357)
T 3i2n_A          219 RKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK  298 (357)
T ss_dssp             CSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred             CCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc
Confidence            6   44 45556668999999987643221 22223346777899999999998 89999999999999987643     


Q ss_pred             --------------EeEEeeecCCCCCcceEEEECCCCCEEE-EEcCCCcEEEEECCCCce
Q 020021          240 --------------LLSTYNVKPVSRNSTLEASFSPEGMFVI-SGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       240 --------------~~~~~~~~~~~~~~~~~v~~spdg~~l~-sgs~Dg~i~vWd~~~~~~  285 (332)
                                    .+..+.   .|...+.+++|+|++++|+ +++.||.|++||+.+.+.
T Consensus       299 ~~~g~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          299 DSEGIEMGVAGSVSLLQNVT---LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CTTSCCCCCCCEEEEEEEEE---CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             cCCCCccccccccceeeccc---cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence                          333333   4677899999999999998 899999999999987654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.8e-32  Score=246.82  Aligned_cols=243  Identities=20%  Similarity=0.221  Sum_probs=189.1

Q ss_pred             eccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc---cceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           30 FRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        30 l~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      +.+|.+.|.+++|+| ++++|++++.|++|++||+.+ ..+..+..+.   ..+..++|++++..+++++.   |+.|++
T Consensus       114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i  189 (383)
T 3ei3_B          114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS---TGRLLL  189 (383)
T ss_dssp             CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEET---TSEEEE
T ss_pred             cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECC---CCCEEE
Confidence            347999999999999 679999999999999999985 5555555443   67999999999999988864   789999


Q ss_pred             EEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCC----ceEEEEEEec-CceeEEEcC-CCeEE-E
Q 020021          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRA----EKCQGLLRVQ-GRPAAAYDD-QGLVF-A  177 (332)
Q Consensus       106 ~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~----~~~~~~~~~~-~~~~~~~~~-~~~~~-~  177 (332)
                      ||+ +++.+..+.+|...|.+++|+|+++ +|++++.|++|++||+++    +.+...+... ......+++ ++.++ +
T Consensus       190 ~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~  268 (383)
T 3ei3_B          190 LGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT  268 (383)
T ss_dssp             EET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEE
T ss_pred             EEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEE
Confidence            999 5778899999999999999999998 999999999999999987    5555555322 234567777 66544 4


Q ss_pred             EEeCCEEEEEECccCCCCCeeEEEe----cCCC----------CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE
Q 020021          178 VAFGGYIRMFDARKYEKGPFDIFSV----GGDI----------SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST  243 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~~~~~~~~~~----~~~~----------~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~  243 (332)
                      ++.|+.|++||++....... ....    ..+.          ..+..++|+|||++  +++.|+.|++||+.+++.+..
T Consensus       269 ~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~  345 (383)
T 3ei3_B          269 TDQRNEIRVYSSYDWSKPDQ-IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ  345 (383)
T ss_dssp             EESSSEEEEEETTBTTSCSE-EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE
T ss_pred             EcCCCcEEEEECCCCccccc-cccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee
Confidence            55689999999987543211 1110    0111          23344667777766  778999999999999998887


Q ss_pred             eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      +.... +...+..++|+|++++|++|+ ||.|++||+.+
T Consensus       346 l~~~~-~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          346 LRDPN-AAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ECBTT-BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ecCCC-CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            76421 345556679999999999997 99999999865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-31  Score=237.62  Aligned_cols=251  Identities=16%  Similarity=0.223  Sum_probs=202.8

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      ...++|.+|...|.+++|+|++++|++++.|+.|++|+............+...+....+.+.+..+++++.   |+.++
T Consensus        77 ~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---d~~~~  153 (340)
T 4aow_A           77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR---DKTIK  153 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---TSCEE
T ss_pred             eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC---CCeEE
Confidence            356789999999999999999999999999999999999999888888888778888899999999988764   78999


Q ss_pred             EEEccCCce-EEEeecccccEEEEEecCCC--CeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEE-EE
Q 020021          105 LLSLHDNKY-LRYFKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVF-AV  178 (332)
Q Consensus       105 v~d~~~~~~-~~~~~~h~~~V~~v~~~~~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~  178 (332)
                      +||+..... ...+.+|...|..++|++++  ..+++++.|++|++||++++++...+..+.  .....+++++.++ ++
T Consensus       154 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  233 (340)
T 4aow_A          154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG  233 (340)
T ss_dssp             EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEE
Confidence            999876543 44567899999999999864  478999999999999999998877665433  3356677776555 45


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec------CCCCC
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK------PVSRN  252 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~~  252 (332)
                      +.|+.|++||++....    ...... ...+..++|+|++.++ +++.|+.|++||+..+..+..+...      ..+..
T Consensus       234 s~Dg~i~iwd~~~~~~----~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~  307 (340)
T 4aow_A          234 GKDGQAMLWDLNEGKH----LYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP  307 (340)
T ss_dssp             ETTCEEEEEETTTTEE----EEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCC
T ss_pred             eCCCeEEEEEeccCce----eeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCC
Confidence            5689999999976431    222222 2468899999998765 5567999999999988877665421      24567


Q ss_pred             cceEEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 020021          253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~  284 (332)
                      .+.+++|+|||++|++|+.||+|+|||+++|+
T Consensus       308 ~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          308 QCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            88999999999999999999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.2e-32  Score=242.88  Aligned_cols=226  Identities=15%  Similarity=0.173  Sum_probs=176.9

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccC--
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSH--   87 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~d--g~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--   87 (332)
                      +++|+.--...++..+|.+|+++|.+++|+|+  +++|+||+.|++|+|||+.+++  ++..+..|...|..++|+|+  
T Consensus        33 v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~  112 (297)
T 2pm7_B           33 IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY  112 (297)
T ss_dssp             EEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGG
T ss_pred             EEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCC
Confidence            44554222234667899999999999999864  8999999999999999999874  56677788889999999997  


Q ss_pred             CCEEEEecCCCCCceeEEEEccCCc--eEEEeecccccEEEEEecCC-------------CCeEEEeeCCCcEEEEeCCC
Q 020021           88 PTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSS-------------KDCFISGSLDRTVLLWDQRA  152 (332)
Q Consensus        88 ~~~~~~~s~~g~d~~v~v~d~~~~~--~~~~~~~h~~~V~~v~~~~~-------------~~~l~s~s~Dg~i~iWd~~~  152 (332)
                      +..+++++.   |++|++||+.++.  ....+.+|...|.+++|+|+             +++|++|+.|++|++||+++
T Consensus       113 g~~l~s~s~---d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~  189 (297)
T 2pm7_B          113 GPMLLVASS---DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS  189 (297)
T ss_dssp             CSEEEEEET---TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET
T ss_pred             CcEEEEEEC---CCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence            677777754   8899999998753  24678899999999999996             46899999999999999765


Q ss_pred             ceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC---CEEEEEcCCCe
Q 020021          153 EKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG---RLMLLTTMEGH  229 (332)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg---~~l~~~~~dg~  229 (332)
                      +.....                                       ....+.+|...|.+++|+|++   .++++++.|++
T Consensus       190 ~~~~~~---------------------------------------~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~  230 (297)
T 2pm7_B          190 DAQTYV---------------------------------------LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT  230 (297)
T ss_dssp             TTTEEE---------------------------------------EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             CCceEE---------------------------------------EEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence            431100                                       011223566778999999995   89999999999


Q ss_pred             EEEEEccCCeE--e-EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          230 IHVLDSFRGTL--L-STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       230 i~i~d~~~~~~--~-~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      |++||+..+..  . ..+. ...+...+.+++|+|+|++||+++.||+|+||+...
T Consensus       231 v~iWd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          231 CIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EEEEEeCCCCCccceeeee-cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            99999876431  1 1121 123567788999999999999999999999999863

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-33  Score=258.98  Aligned_cols=263  Identities=11%  Similarity=0.080  Sum_probs=203.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~  110 (332)
                      +.-+..|.+|+|+|||.++||+|.|++|+  |...++++   .+|...|..++|+|++          .++.+++|+.+.
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg----------~~~~~~~~~~~~   76 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE----------FENKLDFELAQQ   76 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC----------CCCTTTTSCCCS
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC----------CcceEEEEeCCC
Confidence            56678899999999999999999999999  76666544   6899999999999987          145566665432


Q ss_pred             CceEEEee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-------ceeEEEcCCCeEEEEEe-C
Q 020021          111 NKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-------RPAAAYDDQGLVFAVAF-G  181 (332)
Q Consensus       111 ~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~  181 (332)
                      .   ..+. +|...|.+++|+|+|++||+++.||+|++||.+.  +...+. +.       ....+++|++.+++++. |
T Consensus        77 ~---~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D  150 (588)
T 2j04_A           77 N---GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED  150 (588)
T ss_dssp             S---CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred             c---eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC
Confidence            2   2233 5688999999999999999999999999999543  443333 22       44678889887666665 8


Q ss_pred             CEEEEEECccCCC-CC--eeEEEe----cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEe---EEeeecCCCC
Q 020021          182 GYIRMFDARKYEK-GP--FDIFSV----GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL---STYNVKPVSR  251 (332)
Q Consensus       182 ~~i~vwd~~~~~~-~~--~~~~~~----~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~  251 (332)
                      |+|++||+..... .+  ......    ++|...|.+++|||||  +++++.|+.|++||+..+...   .++.  ..|.
T Consensus       151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~--~~h~  226 (588)
T 2j04_A          151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ--NASR  226 (588)
T ss_dssp             SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE--CCCS
T ss_pred             CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec--cccc
Confidence            9999999876432 01  122232    5677899999999999  788899999999999876632   2332  2456


Q ss_pred             CcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEe--CCCeeEEEeccceE-EEeccc
Q 020021          252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW--TPGSLMFVTGSSEL-SFWIPD  321 (332)
Q Consensus       252 ~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~--sp~~~~l~t~~~d~-~~w~~~  321 (332)
                      ..|.+++|+  |++||+++ |++|++||+.+++......+|.+.+..++|  +||+..+++++.+- ++|..+
T Consensus       227 ~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d  296 (588)
T 2j04_A          227 RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLED  296 (588)
T ss_dssp             SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESS
T ss_pred             CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec
Confidence            788999999  68999997 699999999887764444489999999999  99999999998764 488653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-31  Score=239.61  Aligned_cols=261  Identities=15%  Similarity=0.134  Sum_probs=213.3

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY   93 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (332)
                      +.+|+  +...+....+.+|.+.|.+++|+|++++|++++.|++|++||+.+++++..+. +...+..++|++++..+++
T Consensus        56 i~vwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  132 (369)
T 3zwl_B           56 ASVWY--SLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLA  132 (369)
T ss_dssp             EEEEE--TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred             EEEEe--CCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEE
Confidence            44444  23456778899999999999999999999999999999999999999998887 6778999999999999988


Q ss_pred             ecCC--CCCceeEEEEccCCc-----------eEEEeecccc--cEEEEEecCCCCeEEEeeCCCcEEEEeCCC-ceEEE
Q 020021           94 SSKN--GWDESLRLLSLHDNK-----------YLRYFKGHHD--RVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQG  157 (332)
Q Consensus        94 ~s~~--g~d~~v~v~d~~~~~-----------~~~~~~~h~~--~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~-~~~~~  157 (332)
                      +..+  +.++.+++||+..+.           .+..+..|..  .+.+++|+|+++.|++++.||.|++||+++ .....
T Consensus       133 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  212 (369)
T 3zwl_B          133 ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVD  212 (369)
T ss_dssp             EECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEE
T ss_pred             ecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEE
Confidence            7642  123799999987653           3455666776  999999999999999999999999999988 66666


Q ss_pred             EEEecC--ceeEEEcCCCeEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC------
Q 020021          158 LLRVQG--RPAAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG------  228 (332)
Q Consensus       158 ~~~~~~--~~~~~~~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg------  228 (332)
                      .+..+.  .....+++++.+++ ++.++.|++||++...  ....+.   +...+..++|+|+++++++++.++      
T Consensus       213 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  287 (369)
T 3zwl_B          213 SIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTT  287 (369)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEE---CSSCEEEEEECSSSSEEEEEECCC------
T ss_pred             EEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc--eeeeec---CCCCceeEEecCCCceEEEeecCCCceEEE
Confidence            665432  34567777775544 5568999999997643  122222   345788999999999999999988      


Q ss_pred             --------eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          229 --------HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       229 --------~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                              .+++||..+++.+..+.   .|...+..++|+|++++|++++.||.|++|++.++..
T Consensus       288 ~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          288 TSANEGKFEARFYHKIFEEEIGRVQ---GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             -------CEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             EecCCCcceeEEEecCCCcchhhee---cccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence                    89999999999887776   4667889999999999999999999999999987554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.2e-32  Score=255.45  Aligned_cols=252  Identities=13%  Similarity=0.257  Sum_probs=206.0

Q ss_pred             eEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCC----------CeeeEEeeecccceeEEEEccCCC-EEEEec
Q 020021           28 MSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTA----------ATCLKTINSKKYGVDLVCFTSHPT-TVIYSS   95 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~d-g~~l~tgs~D~tv~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s   95 (332)
                      ..+.+|.+.|++++|+|+ +.+|++++.|++|+|||+.+          ...+..+..|...+..++|++.+. .+++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            446789999999999998 68999999999999999986          567788889999999999999988 677665


Q ss_pred             CCCCCceeEEEEccCCce-------EEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeE
Q 020021           96 KNGWDESLRLLSLHDNKY-------LRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA  167 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~-------~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~  167 (332)
                      .   |+.|++||+..+..       ...+.+|...|.+++|+| ++..|++++.|+.|++||++++...       .   
T Consensus       202 ~---dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-------~---  268 (430)
T 2xyi_A          202 D---DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-------K---  268 (430)
T ss_dssp             T---TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-------S---
T ss_pred             C---CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-------c---
Confidence            3   88999999987322       456779999999999999 6789999999999999999865210       0   


Q ss_pred             EEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccC-CeEeEEee
Q 020021          168 AYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFR-GTLLSTYN  245 (332)
Q Consensus       168 ~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~-~~~~~~~~  245 (332)
                                                  ..  .....+...+++++|+|++. ++++++.||.|++||++. ...+..+.
T Consensus       269 ----------------------------~~--~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~  318 (430)
T 2xyi_A          269 ----------------------------PS--HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE  318 (430)
T ss_dssp             ----------------------------CS--EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred             ----------------------------ce--eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee
Confidence                                        00  00112445688999999997 788999999999999987 45555555


Q ss_pred             ecCCCCCcceEEEECCCCC-EEEEEcCCCcEEEEECCC--------------CceEEEecCCCCCCceEEeCCCee-EEE
Q 020021          246 VKPVSRNSTLEASFSPEGM-FVISGSGDGSVYAWSVRS--------------GKEVASWMSFDTEPPVIKWTPGSL-MFV  309 (332)
Q Consensus       246 ~~~~~~~~~~~v~~spdg~-~l~sgs~Dg~i~vWd~~~--------------~~~~~~~~~~~~~v~~l~~sp~~~-~l~  309 (332)
                         .|...+.+++|+|+++ +|++++.||.|+|||+..              .+.+..+..|...|.+++|+|++. +++
T Consensus       319 ---~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~  395 (430)
T 2xyi_A          319 ---SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC  395 (430)
T ss_dssp             ---CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred             ---cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence               4567899999999995 799999999999999976              255677788999999999999998 888


Q ss_pred             eccce--EEEeccccccc
Q 020021          310 TGSSE--LSFWIPDLSKL  325 (332)
Q Consensus       310 t~~~d--~~~w~~~~~~~  325 (332)
                      +++.|  +++|.++...+
T Consensus       396 s~s~dg~i~iw~~~~~~~  413 (430)
T 2xyi_A          396 SVSEDNIMQVWQMAENVY  413 (430)
T ss_dssp             EEETTSEEEEEEECHHHH
T ss_pred             EEECCCCEEEeEcccccc
Confidence            88876  88898765433

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-33  Score=259.83  Aligned_cols=288  Identities=13%  Similarity=0.228  Sum_probs=210.2

Q ss_pred             eeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEe-eecccceeEEEEcc-CCCE
Q 020021           13 SLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTS-HPTT   90 (332)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~   90 (332)
                      +++.-+..|..++..-.++...      .|+|++..+++++      .|+ .+++++..+ .+|...|..++|++ ++..
T Consensus        12 ~~~~~~~~l~~~~~~p~~~~~~------~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~   78 (437)
T 3gre_A           12 DVESIEKFLSTFKILPPLRDYK------EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPY   78 (437)
T ss_dssp             --CCCGGGTTCC-CCCCGGGCG------GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCE
T ss_pred             ChhHHHHHhccCCCCCChhchh------hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCE
Confidence            3344445555555444443332      3788888888776      387 457888888 78889999999999 8888


Q ss_pred             EEEecCCCCCceeEEEEccC---Cc---eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC---CceEEEEEEe
Q 020021           91 VIYSSKNGWDESLRLLSLHD---NK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR---AEKCQGLLRV  161 (332)
Q Consensus        91 ~~~~s~~g~d~~v~v~d~~~---~~---~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~---~~~~~~~~~~  161 (332)
                      +++++.   |++|++||+.+   +.   ....+ +|...|++++|+|++++|++++.||+|++||+.   .+++......
T Consensus        79 l~s~s~---dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  154 (437)
T 3gre_A           79 LITGSD---QGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC  154 (437)
T ss_dssp             EEEEET---TSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEecC---CceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc
Confidence            888864   88999999876   43   22333 599999999999999999999999999999984   4444333221


Q ss_pred             cCce--------------eEE--EcCCCe-EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE
Q 020021          162 QGRP--------------AAA--YDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT  224 (332)
Q Consensus       162 ~~~~--------------~~~--~~~~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~  224 (332)
                      ....              ...  +.+++. +++++.|+.|++||++..+  ....+....+...+.+++|+|++++++++
T Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  232 (437)
T 3gre_A          155 ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDEECCVLILG  232 (437)
T ss_dssp             EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECTTSCEEEEE
T ss_pred             ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--eeEEEccCCCCCceEEEEECCCCCEEEEE
Confidence            1111              111  234454 5555568999999998643  12222221256789999999999999999


Q ss_pred             cCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE----CCCCCEEEEEcCCCcEEEEECCCCceEEEecCC--------
Q 020021          225 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF----SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF--------  292 (332)
Q Consensus       225 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~----spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~--------  292 (332)
                      +.||.|++||+++++.+..+..  .+...+.+++|    +|++++|++|+.||+|++||+.+++.+..+..|        
T Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  310 (437)
T 3gre_A          233 TTRGIIDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH  310 (437)
T ss_dssp             ETTSCEEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG
T ss_pred             cCCCeEEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce
Confidence            9999999999999988877653  24457888855    467889999999999999999999887776644        


Q ss_pred             ------------------CCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          293 ------------------DTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       293 ------------------~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                                        ...|++++|+ ++++|++++.|  +++|+...
T Consensus       311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          311 FLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             GSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC
T ss_pred             ecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC
Confidence                              4446777888 66889999877  88888644

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-31  Score=236.43  Aligned_cols=255  Identities=18%  Similarity=0.235  Sum_probs=206.5

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC---eeeEEeeecccceeEEEEccCCCE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTT   90 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~   90 (332)
                      +.+|+-  ...+....+..|.+.|.+++|+|++++|++++.|+.+++|++...   +++..+..|...+..++|  ++..
T Consensus        41 v~vw~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~  116 (313)
T 3odt_A           41 VRLWSK--DDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGV  116 (313)
T ss_dssp             EEEEEE--SSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTE
T ss_pred             EEEEEC--CCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCE
Confidence            445543  445667788999999999999999999999999999999998754   567778888888988888  5667


Q ss_pred             EEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEe-c--Ccee
Q 020021           91 VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRV-Q--GRPA  166 (332)
Q Consensus        91 ~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-~--~~~~  166 (332)
                      +++++.   |+.+++||  .++.+..+.+|...|.++.|+| +++.+++++.|+.|++||.  ++....+.. .  ....
T Consensus       117 l~~~~~---d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~  189 (313)
T 3odt_A          117 VISGSW---DKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRH  189 (313)
T ss_dssp             EEEEET---TSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEE
T ss_pred             EEEEeC---CCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEE
Confidence            777764   88999999  6778888999999999999988 8999999999999999994  334444432 1  2345


Q ss_pred             EEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021          167 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                      ..+.+++.+++++.++.|++||++..+    ......++...+.+++|+|++ .+++++.||.|++||+.+++.+..+. 
T Consensus       190 ~~~~~~~~~~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-  263 (313)
T 3odt_A          190 LAVVDDGHFISCSNDGLIKLVDMHTGD----VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-  263 (313)
T ss_dssp             EEEEETTEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-
T ss_pred             EEEcCCCeEEEccCCCeEEEEECCchh----hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-
Confidence            566777777778889999999997643    233344667789999999999 58899999999999999999888776 


Q ss_pred             cCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEE
Q 020021          247 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS  288 (332)
Q Consensus       247 ~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~  288 (332)
                        .+...+..++|+|+++ +++++.||.|++||+.+++.+..
T Consensus       264 --~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          264 --LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             --CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred             --ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence              3556888999999999 55789999999999988776543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-31  Score=249.39  Aligned_cols=279  Identities=11%  Similarity=0.006  Sum_probs=216.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---eeEEeeecc-----------------------------------
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---CLKTINSKK-----------------------------------   76 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~---~~~~~~~~~-----------------------------------   76 (332)
                      .++.+++|+|+|++|+++ .++.|++||+.+++   .+..+..+.                                   
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578999999999976655 57899999999998   666655322                                   


Q ss_pred             -------------------cceeEEEEccCCCEE-EEecCCCCCceeEEEEcc--CCceEEEee--cccccEEEEEecCC
Q 020021           77 -------------------YGVDLVCFTSHPTTV-IYSSKNGWDESLRLLSLH--DNKYLRYFK--GHHDRVVSLSLCSS  132 (332)
Q Consensus        77 -------------------~~v~~~~~~~~~~~~-~~~s~~g~d~~v~v~d~~--~~~~~~~~~--~h~~~V~~v~~~~~  132 (332)
                                         ..|..++|+|++..+ ++++   .|+.|++||+.  +++.+..+.  .|...|.+++|+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACAD---SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEG---GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEEC---CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                               258899999999986 5554   38899999999  888888886  56789999999999


Q ss_pred             CCeEEEeeCCCcEEEEeCCCceEEE----EEEec--CceeEEEcCC---Ce-EEEEEeCCEEEEEECccCCCCCeeEEEe
Q 020021          133 KDCFISGSLDRTVLLWDQRAEKCQG----LLRVQ--GRPAAAYDDQ---GL-VFAVAFGGYIRMFDARKYEKGPFDIFSV  202 (332)
Q Consensus       133 ~~~l~s~s~Dg~i~iWd~~~~~~~~----~~~~~--~~~~~~~~~~---~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~  202 (332)
                      +++|++++.||.+++|++.++....    .+..+  ......++++   +. +++++.|+.|++||++...   ......
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~  237 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF---IVDKWL  237 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT---CEEEEC
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc---eeeeee
Confidence            9999999999999999987765432    33322  2335566676   64 5556668999999987542   111123


Q ss_pred             cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecC----------------------CCCCcceEEEEC
Q 020021          203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP----------------------VSRNSTLEASFS  260 (332)
Q Consensus       203 ~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------------~~~~~~~~v~~s  260 (332)
                      .+|...+.+++|+ +|+++++++.|+.|++||+.+++.+..+....                      .....+..++|+
T Consensus       238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence            4677789999999 99999999999999999999999887765321                      122456789999


Q ss_pred             CCCCEEEEEc-CCCcEEEEEC--CCC---ceEEEecCCCCCCceEEeCCCeeEEEeccce--------EEEecccc
Q 020021          261 PEGMFVISGS-GDGSVYAWSV--RSG---KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--------LSFWIPDL  322 (332)
Q Consensus       261 pdg~~l~sgs-~Dg~i~vWd~--~~~---~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--------~~~w~~~~  322 (332)
                      |++++|++++ .|+.|+||++  .++   +.+..+..| ..+.+++|+|++.+++.++.+        +.+|..+.
T Consensus       317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            9999999998 8999999999  555   556667777 789999999976666555432        68886543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-33  Score=249.19  Aligned_cols=258  Identities=12%  Similarity=0.106  Sum_probs=187.2

Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc---------CC
Q 020021           41 DFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH---------DN  111 (332)
Q Consensus        41 ~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~---------~~  111 (332)
                      ++.+++.+|++|+.|++|++||+.+++++..+.  ...|..+.++|.   +++++   .|+++++|+..         ++
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s---~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRG---PCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEEC---STTEEEEEETTTEEEEEETTTC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEec---CCCeEEEEEccCceEEeecCCc
Confidence            345678999999999999999999999888776  345666667766   66554   38899999655         44


Q ss_pred             ceEEEee-cccccEEEEEecC--CCCeEEEeeCCCcEEEEeCCCceEEEEEEec---CceeEEEcCCCeEEEEE-eCCEE
Q 020021          112 KYLRYFK-GHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAAYDDQGLVFAVA-FGGYI  184 (332)
Q Consensus       112 ~~~~~~~-~h~~~V~~v~~~~--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~i  184 (332)
                      +.+..+. +|.++|.+++|+|  ++++|++++.||+|++||++++++.......   ......+++++.+++++ .|+.|
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i  194 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL  194 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEE
Confidence            4444444 6778999999999  9999999999999999999998875544322   23467788888777764 68999


Q ss_pred             EEEECccCCCCCeeEEEecC-CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc--eEEEECC
Q 020021          185 RMFDARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST--LEASFSP  261 (332)
Q Consensus       185 ~vwd~~~~~~~~~~~~~~~~-~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~v~~sp  261 (332)
                      ++||++..+...   ....+ |...+.+++|+|+|.++++++ ++.|++||+++++.+..+.....+...+  ..++|+|
T Consensus       195 ~iwd~~~~~~~~---~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (343)
T 3lrv_A          195 DVYNLSSPDQAS---SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD  270 (343)
T ss_dssp             EEEESSCTTSCC---EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT
T ss_pred             EEEECCCCCCCc---cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC
Confidence            999998754321   12334 678999999999999999999 5599999999887654433211122222  3599999


Q ss_pred             CCCEEEEEcC-CCcEEEEECCCCceEEEecCCCCCCceEEeCC---CeeEEEeccce
Q 020021          262 EGMFVISGSG-DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP---GSLMFVTGSSE  314 (332)
Q Consensus       262 dg~~l~sgs~-Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp---~~~~l~t~~~d  314 (332)
                      +|++|++++. |+.|+||++.+.......    .++..++|+|   +.+.+++++.|
T Consensus       271 ~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d  323 (343)
T 3lrv_A          271 SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGD  323 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEET
T ss_pred             CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecC
Confidence            9999999988 999999999765443322    2344556666   55555555544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=6.6e-31  Score=242.83  Aligned_cols=284  Identities=13%  Similarity=0.176  Sum_probs=221.3

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEE-----eeecccceeEEEEccCCCEEEEecCCC
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-----INSKKYGVDLVCFTSHPTTVIYSSKNG   98 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~s~~g   98 (332)
                      ++....+..+.. +.+++|+|++.++++++.|++|++||+.+++.+..     +..|...+..++|++++..+++++.  
T Consensus       113 ~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~--  189 (433)
T 3bws_A          113 HRFISRFKTGFQ-PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ--  189 (433)
T ss_dssp             EEEEEEEECSSC-BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG--
T ss_pred             ceEEEEEcCCCC-ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC--
Confidence            355556666554 45899999888889999999999999999988873     3456667889999888877777653  


Q ss_pred             CCceeEEEEccCCceEEEeecccccEEEEEecCCCCeE-EEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEE
Q 020021           99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVF  176 (332)
Q Consensus        99 ~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l-~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~  176 (332)
                       |+.|++||+.+++.+..+..|...+.+++|+|+++.+ ++++.|++|++||+++++....+..... ....+++++..+
T Consensus       190 -d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l  268 (433)
T 3bws_A          190 -ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKEL  268 (433)
T ss_dssp             -GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEE
T ss_pred             -CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEE
Confidence             7899999999999999999999999999999999977 5556899999999998887666544333 345677777544


Q ss_pred             -EEEe--------CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE-EEEEcCCCeEEEEEccCCeEeEEeee
Q 020021          177 -AVAF--------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       177 -~~~~--------~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~-l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                       +++.        ++.|++||++..+.  ....   .+...+..++|+|+|+. +++++.++.|++||+.+++.+..+. 
T Consensus       269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-  342 (433)
T 3bws_A          269 YIAQFSASNQESGGGRLGIYSMDKEKL--IDTI---GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-  342 (433)
T ss_dssp             EEEEEESCTTCSCCEEEEEEETTTTEE--EEEE---EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-
T ss_pred             EEEECCCCccccCCCeEEEEECCCCcE--Eeec---cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-
Confidence             4442        67999999875421  1111   12235678999999974 5667999999999999998877664 


Q ss_pred             cCCCCCcceEEEECCCCCEEEEEcC---------------CCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEec
Q 020021          247 KPVSRNSTLEASFSPEGMFVISGSG---------------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG  311 (332)
Q Consensus       247 ~~~~~~~~~~v~~spdg~~l~sgs~---------------Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~  311 (332)
                         +...+..++|+|||++|++++.               ||.|++||+.+++.+..+..+ ..+..++|+|++++|+++
T Consensus       343 ---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          343 ---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             ---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEE
T ss_pred             ---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEE
Confidence               2355778999999999998876               579999999999888877654 468999999999888766


Q ss_pred             cc-e--EEEeccc
Q 020021          312 SS-E--LSFWIPD  321 (332)
Q Consensus       312 ~~-d--~~~w~~~  321 (332)
                      +. |  +.+|+.+
T Consensus       419 ~~~d~~i~v~~~~  431 (433)
T 3bws_A          419 DFLDHQIRVYRRD  431 (433)
T ss_dssp             ETTTTEEEEEEET
T ss_pred             ECCCCeEEEEEec
Confidence            43 4  7788764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-31  Score=239.17  Aligned_cols=251  Identities=11%  Similarity=0.221  Sum_probs=196.5

Q ss_pred             CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc--CCceEEEeecccccEEEEEecCC--CCeEEEeeC
Q 020021           66 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH--DNKYLRYFKGHHDRVVSLSLCSS--KDCFISGSL  141 (332)
Q Consensus        66 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~--~~~~~~~~~~h~~~V~~v~~~~~--~~~l~s~s~  141 (332)
                      |+++..+.+|...|..++|++++..+++++.   |+.|++||+.  +++.+..+.+|...|++++|+++  +++|++++.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   77 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSS---DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   77 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEET---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEEC---CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence            3566778899999999999999999988864   7899999998  55677889999999999999977  899999999


Q ss_pred             CCcEEEEeCCCceE--EEEEEec--CceeEEEcCC--C-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEE
Q 020021          142 DRTVLLWDQRAEKC--QGLLRVQ--GRPAAAYDDQ--G-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF  214 (332)
Q Consensus       142 Dg~i~iWd~~~~~~--~~~~~~~--~~~~~~~~~~--~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~  214 (332)
                      ||+|++||+++++.  ...+..+  ......+++.  + .+++++.|+.|++||++......  ......+...+.+++|
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~v~~~~~  155 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASW  155 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC--EEEEECCTTCEEEEEE
T ss_pred             CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee--eEEecCCCCceEEEEE
Confidence            99999999988863  3333222  2345566665  5 45556678999999998653322  2334456678999999


Q ss_pred             cC-------------CCCEEEEEcCCCeEEEEEccCCeEeEEe-eecCCCCCcceEEEECCC---CCEEEEEcCCCcEEE
Q 020021          215 SN-------------DGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKPVSRNSTLEASFSPE---GMFVISGSGDGSVYA  277 (332)
Q Consensus       215 s~-------------dg~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~v~~spd---g~~l~sgs~Dg~i~v  277 (332)
                      +|             ++.++++++.||.|++||+.++...... .....|...+.+++|+|+   +++|++++.||.|++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i  235 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII  235 (379)
T ss_dssp             CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence            99             7999999999999999999876432111 111246778999999999   999999999999999


Q ss_pred             EECCCCce-----EEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccc
Q 020021          278 WSVRSGKE-----VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       278 Wd~~~~~~-----~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~  321 (332)
                      ||+.++..     +.....|...+.+++|+|++++|++++.|  +++|+..
T Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          236 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             EeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            99988642     22223478889999999999999998877  8888875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-32  Score=250.25  Aligned_cols=241  Identities=14%  Similarity=0.095  Sum_probs=185.5

Q ss_pred             eecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC--ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeC
Q 020021           73 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ  150 (332)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~--~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~  150 (332)
                      ..+..+|..++|+|+++.+++++   .|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~---~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTT---ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCC---SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             ecCCCcEEEEEECCCCCEEEEec---CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            34556799999999999888764   3889999999988  678889999999999999999999999999999999999


Q ss_pred             CCce---EEEEEEec--CceeEEEcCCCe-EEEEEeCCEEEEEECccCCCCCeeEEEecC-CCCCceeEEEcCCCCEEEE
Q 020021          151 RAEK---CQGLLRVQ--GRPAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLL  223 (332)
Q Consensus       151 ~~~~---~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~v~~v~~s~dg~~l~~  223 (332)
                      +++.   +...+..+  ......+++++. +++++.|+.|++||++....-.. ...+.+ +...+.+++|+|+++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~~  163 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV-SKHLKRPLRSTILSLDWHPNNVLLAA  163 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC-CEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee-eeEeecccCCCeEEEEEcCCCCEEEE
Confidence            8876   22222222  233556667664 55566789999999976432111 122333 6778999999999999999


Q ss_pred             EcCCCeEEEEEccC------------------CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          224 TTMEGHIHVLDSFR------------------GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       224 ~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                      ++.|+.|++||+..                  ++++..+    .|...+.+++|+|++++|++++.||+|++||+.+++.
T Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            99999999999853                  3333333    4667899999999999999999999999999999887


Q ss_pred             ----EEEecCCCCCCceEEeCCCeeEEEeccce-EEEeccc
Q 020021          286 ----VASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSFWIPD  321 (332)
Q Consensus       286 ----~~~~~~~~~~v~~l~~sp~~~~l~t~~~d-~~~w~~~  321 (332)
                          +..+..|...+.+++|+|++++|++++.+ +.+|...
T Consensus       240 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          240 PPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             CEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             cceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence                77788999999999999999999999877 5566554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.9e-31  Score=238.83  Aligned_cols=245  Identities=13%  Similarity=0.103  Sum_probs=201.6

Q ss_pred             eeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc--eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEe
Q 020021           72 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD  149 (332)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~--~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd  149 (332)
                      +..|..+|..++|++++..+++++.   |+.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.||+|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPN---NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECS---SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeC---CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            3457778999999999999888754   8899999999987  8889999999999999999999999999999999999


Q ss_pred             CCCceEEEEEEec----CceeEEEcCCCeEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE
Q 020021          150 QRAEKCQGLLRVQ----GRPAAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT  224 (332)
Q Consensus       150 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~  224 (332)
                      +++++....+...    ......+++++.+++ ++.++.|++||++.............++...+.+++|+|++++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  160 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  160 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence            9888765544322    233566777665554 55689999999876432111122234556789999999999999999


Q ss_pred             cCCCeEEEEEcc------------------CCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 020021          225 TMEGHIHVLDSF------------------RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV  286 (332)
Q Consensus       225 ~~dg~i~i~d~~------------------~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~  286 (332)
                      +.||.|++||+.                  .++.+..+.   .+...+..++|+|++++|++++.||.|++||+.+++.+
T Consensus       161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             cCCCCEEEEEcccccccccccccccccccchhhheEecC---CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence            999999999953                  566666554   45678889999999999999999999999999999999


Q ss_pred             EEecCCCCCCceEEeCCCeeEEEeccce-EEEecccc
Q 020021          287 ASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSFWIPDL  322 (332)
Q Consensus       287 ~~~~~~~~~v~~l~~sp~~~~l~t~~~d-~~~w~~~~  322 (332)
                      ..+..|...+.+++|+|++++++++... +.+|+...
T Consensus       238 ~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          238 ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             EEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             EEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence            9999999999999999999999888443 89998765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.3e-32  Score=253.85  Aligned_cols=264  Identities=16%  Similarity=0.208  Sum_probs=185.9

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeec--ccceeEEEEccCCCE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSK--KYGVDLVCFTSHPTT   90 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~   90 (332)
                      +.||+--.........+.+|.++|++|+|+| ++++|+|||.|++|+|||+.++........+  ...+..++|++++..
T Consensus       144 i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (435)
T 4e54_B          144 IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM  223 (435)
T ss_dssp             EEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTE
T ss_pred             EEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCE
Confidence            5666543344445556789999999999998 6899999999999999999876544333333  234677899999999


Q ss_pred             EEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEE---ec--Cc
Q 020021           91 VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLR---VQ--GR  164 (332)
Q Consensus        91 ~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~---~~--~~  164 (332)
                      +++++.   |+.|++||+.. +.+..+.+|...|++++|+|+++ +|++++.|++|++||+++.+....+.   .+  ..
T Consensus       224 l~~g~~---dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v  299 (435)
T 4e54_B          224 VVTGDN---VGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV  299 (435)
T ss_dssp             EEEECS---SSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCE
T ss_pred             EEEEeC---CCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccc
Confidence            988764   88999999864 56778899999999999999876 78899999999999998765433221   11  22


Q ss_pred             eeEEEcCCCe-EEEEEeCCEEEEEECccCCCCCeeEEEec---CCCCCceeEEEcCCCCEEEEEc------------CCC
Q 020021          165 PAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVG---GDISDANVVKFSNDGRLMLLTT------------MEG  228 (332)
Q Consensus       165 ~~~~~~~~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~---~~~~~v~~v~~s~dg~~l~~~~------------~dg  228 (332)
                      ..+.+++++. +++++.|+.|++||++..... .......   ........+.++|++.+++++.            .++
T Consensus       300 ~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  378 (435)
T 4e54_B          300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCP-LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELR  378 (435)
T ss_dssp             EECCBCTTSSEEEEEESSSCEEEEESSSSSSE-EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCC
T ss_pred             cceeECCCCCeeEEEcCCCEEEEEECCCCccc-eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCC
Confidence            3456677665 555667899999999864321 0000000   0001122344555555555443            345


Q ss_pred             eEEEEEccCCeEeEEeeecCCCCCcceEE-EECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEA-SFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v-~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                      .|++||..+++.+..+..  .+...+.++ +|+|||++|++|+ |++|+|||+++++.
T Consensus       379 ~i~iwd~~~g~~~~~l~~--~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          379 TIDVFDGNSGKMMCQLYD--PESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CEEEECSSSCCEEEEECC--SSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             EEEEEECCCCcEEEEEeC--CCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            799999999998876542  345566666 7999999999986 88999999988764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.1e-31  Score=247.18  Aligned_cols=259  Identities=19%  Similarity=0.307  Sum_probs=196.5

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      ...+..+.+.+|.+.|.+++|  ++++|++|+.|++|++||+.+++++.++..|...|..++|+  +..+++++.   |+
T Consensus       161 ~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---dg  233 (435)
T 1p22_A          161 NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSK---DR  233 (435)
T ss_dssp             SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEET---TS
T ss_pred             CCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeC---CC
Confidence            346677889999999999998  68899999999999999999999999999999889888886  457777754   88


Q ss_pred             eeEEEEccCCceE---EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeEE
Q 020021          102 SLRLLSLHDNKYL---RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVF  176 (332)
Q Consensus       102 ~v~v~d~~~~~~~---~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~  176 (332)
                      .|++||+.+++..   ..+.+|...|.+++|  ++++|++++.||+|++||++++++...+..+...  ...+ .+..++
T Consensus       234 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~  310 (435)
T 1p22_A          234 SIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-RDRLVV  310 (435)
T ss_dssp             CEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-ETTEEE
T ss_pred             cEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe-CCCEEE
Confidence            9999999887754   678899999999999  6789999999999999999999888777654332  2233 345666


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe---------EeEEeeec
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT---------LLSTYNVK  247 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~  247 (332)
                      +++.|+.|++||++...    ......++...+.++++  ++.++++++.||.|++||+.++.         .+..+.  
T Consensus       311 ~g~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--  382 (435)
T 1p22_A          311 SGSSDNTIRLWDIECGA----CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--  382 (435)
T ss_dssp             EEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--
T ss_pred             EEeCCCeEEEEECCCCC----EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc--
Confidence            77779999999998642    23345567778888887  88999999999999999987655         555554  


Q ss_pred             CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeC
Q 020021          248 PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT  302 (332)
Q Consensus       248 ~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~s  302 (332)
                       .|...+.+++|  ++++|++|+.||+|++||+.+......... ..+...+.|.
T Consensus       383 -~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~  433 (435)
T 1p22_A          383 -EHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPP-RSPSRTYTYI  433 (435)
T ss_dssp             -CCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             -CCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCC-CCCccceeee
Confidence             46678888998  889999999999999999987665443322 2234445554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.4e-30  Score=228.19  Aligned_cols=266  Identities=12%  Similarity=0.170  Sum_probs=180.3

Q ss_pred             eeEecHHHH-hcccceeEeccCCCc----EEEEEECCCC--CEEEEEeCCCcEEEEEcCCC---eeeEEeeeccccee--
Q 020021           13 SLELSEEIL-QSMEVGMSFRDYNGR----ISSMDFHKSS--SYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVD--   80 (332)
Q Consensus        13 ~~~~~~~~~-~~~~~~~~l~~h~~~----I~~i~~s~dg--~~l~tgs~D~tv~iwd~~~~---~~~~~~~~~~~~v~--   80 (332)
                      .++.++-+- ..+.++-.|+...+.    +.++-|-..|  ...+......+|++|++.++   ++++++.+|..+|.  
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~   92 (356)
T 2w18_A           13 ELPASDSINPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQI   92 (356)
T ss_dssp             -----------CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEE
T ss_pred             cCccccCcCcceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEE
Confidence            355555554 557788888877655    4456564433  23334444568999999998   88898888876543  


Q ss_pred             -----------------------EEEEccC----CCEEEEec-----------------CCCCCceeEEEEc-cCCceEE
Q 020021           81 -----------------------LVCFTSH----PTTVIYSS-----------------KNGWDESLRLLSL-HDNKYLR  115 (332)
Q Consensus        81 -----------------------~~~~~~~----~~~~~~~s-----------------~~g~d~~v~v~d~-~~~~~~~  115 (332)
                                             .++++|+    +..++.++                 ..|+|+.|++|++ .+++.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~  172 (356)
T 2w18_A           93 VPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE  172 (356)
T ss_dssp             CCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE
T ss_pred             EEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceee
Confidence                                   4555666    44444432                 2456888999998 4577788


Q ss_pred             EeecccccEEEEEecC---CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccC
Q 020021          116 YFKGHHDRVVSLSLCS---SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  192 (332)
Q Consensus       116 ~~~~h~~~V~~v~~~~---~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~  192 (332)
                      .+.+|...++.++|++   ++..|+|+|.|++||+||+++++++.++..+..                            
T Consensus       173 s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~----------------------------  224 (356)
T 2w18_A          173 NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS----------------------------  224 (356)
T ss_dssp             EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----------------------------
T ss_pred             eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc----------------------------
Confidence            8888888888888888   678999999999999999999887766642110                            


Q ss_pred             CCCCeeEEEecCCCCCceeEEEcCCCCEE------------EEEcCCCeEEEEEccCCeEeEEeeec--CCCCCcceEEE
Q 020021          193 EKGPFDIFSVGGDISDANVVKFSNDGRLM------------LLTTMEGHIHVLDSFRGTLLSTYNVK--PVSRNSTLEAS  258 (332)
Q Consensus       193 ~~~~~~~~~~~~~~~~v~~v~~s~dg~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~v~  258 (332)
                                  +...+..++|||||.++            ++++.|++|++||..+++.+..+...  ..|....... 
T Consensus       225 ------------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg-  291 (356)
T 2w18_A          225 ------------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG-  291 (356)
T ss_dssp             --------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE-
T ss_pred             ------------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc-
Confidence                        01234556777777765            66888999999999999887655321  2333333333 


Q ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCc-eEEeCCCeeEEEeccce--EEEecc
Q 020021          259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP-VIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       259 ~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~-~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                       +.++.++|+|+.|++|+|||+.+++++.++.+|...+. .++|||||++|++|+.|  +++|+.
T Consensus       292 -~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          292 -DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             -ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence             33488999999999999999999999999998877655 58999999999999998  777764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.1e-32  Score=240.11  Aligned_cols=222  Identities=14%  Similarity=0.177  Sum_probs=172.7

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccC--
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSH--   87 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~--dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--   87 (332)
                      +++|+---.......+|++|.++|.+++|+|  ++++|+||+.|++|+|||+.+++  ++..+.+|...|..++|+|+  
T Consensus        37 v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~  116 (316)
T 3bg1_A           37 VKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDY  116 (316)
T ss_dssp             EEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTT
T ss_pred             EEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCC
Confidence            4555432222345678999999999999986  48999999999999999998874  56677889889999999998  


Q ss_pred             CCEEEEecCCCCCceeEEEEccCCce---EEEeecccccEEEEEecCC-----------------CCeEEEeeCCCcEEE
Q 020021           88 PTTVIYSSKNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSS-----------------KDCFISGSLDRTVLL  147 (332)
Q Consensus        88 ~~~~~~~s~~g~d~~v~v~d~~~~~~---~~~~~~h~~~V~~v~~~~~-----------------~~~l~s~s~Dg~i~i  147 (332)
                      +..+++++.   |++|++||+..+..   ...+.+|...|.+++|+|+                 +++|++|+.|++|++
T Consensus       117 g~~lasgs~---D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~l  193 (316)
T 3bg1_A          117 GLILACGSS---DGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL  193 (316)
T ss_dssp             CSCEEEECS---SSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCE
T ss_pred             CcEEEEEcC---CCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEE
Confidence            567777654   88999999987632   3456789999999999997                 468899999999999


Q ss_pred             EeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC----CEEEE
Q 020021          148 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLL  223 (332)
Q Consensus       148 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg----~~l~~  223 (332)
                      ||++.+.....                                        ...+.+|...|.+++|+|++    .++++
T Consensus       194 Wd~~~~~~~~~----------------------------------------~~~l~~h~~~V~~v~~sp~~~~~~~~las  233 (316)
T 3bg1_A          194 WKEEEDGQWKE----------------------------------------EQKLEAHSDWVRDVAWAPSIGLPTSTIAS  233 (316)
T ss_dssp             EEECTTSCEEE----------------------------------------EECCBCCSSCEEEEECCCCSSCSCCEEEE
T ss_pred             EEeCCCCccce----------------------------------------eeecccCCCceEEEEecCCCCCCCceEEE
Confidence            98754311000                                        01123455678999999987    88999


Q ss_pred             EcCCCeEEEEEccCC---e-EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021          224 TTMEGHIHVLDSFRG---T-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       224 ~~~dg~i~i~d~~~~---~-~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                      ++.|++|++||+...   . ....+.   .+...+.+++|+|++++||+|+.||+|++|+..
T Consensus       234 ~s~D~~v~iw~~~~~~~~~~~~~~~~---~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          234 CSQDGRVFIWTCDDASSNTWSPKLLH---KFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EETTCEEEEEECSSTTCCCCBCCEEE---ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EcCCCeEEEEEccCccccchhhhhhh---cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999999998762   1 111122   245788999999999999999999999999975

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.7e-31  Score=242.11  Aligned_cols=243  Identities=14%  Similarity=0.230  Sum_probs=195.2

Q ss_pred             cEEEEEECCCCCE-EEEEeCCCcEEEEEcCCCe----eeEEeeecccceeEEEEcc-CCCEEEEecCCCCCceeEEEEcc
Q 020021           36 RISSMDFHKSSSY-LVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        36 ~I~~i~~s~dg~~-l~tgs~D~tv~iwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      ....++++|+... +++++.|+.|+|||+....    .+..+.+|...|..++|+| ++..+++++.   |++|++||+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~---dg~v~vw~~~  112 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE---DCTVMVWEIP  112 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEET---TSEEEEEECC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeC---CCeEEEEEcc
Confidence            3445788887754 4568999999999996542    3445778889999999999 7888888764   8899999998


Q ss_pred             CC-------ceEEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021          110 DN-------KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  181 (332)
Q Consensus       110 ~~-------~~~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (332)
                      ++       +.+..+.+|...|.+++|+|++ +.|++++.|++|++||++++++...+.                     
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------  171 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG---------------------  171 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC---------------------
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe---------------------
Confidence            87       6688899999999999999998 699999999999999998876543321                     


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC-cceEEEEC
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN-STLEASFS  260 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~v~~s  260 (332)
                                          ..++...+.+++|+|+|+++++++.||.|++||+.+++.+..+..  .+.. .+..++|+
T Consensus       172 --------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~  229 (402)
T 2aq5_A          172 --------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR--PHEGTRPVHAVFV  229 (402)
T ss_dssp             --------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC--SSCSSSCCEEEEC
T ss_pred             --------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc--CCCCCcceEEEEc
Confidence                                012345678899999999999999999999999999998877621  2333 47789999


Q ss_pred             CCCCEEEEE---cCCCcEEEEECCCCce-EEEe-cCCCCCCceEEeCCCeeEEE-eccce--EEEecccccc
Q 020021          261 PEGMFVISG---SGDGSVYAWSVRSGKE-VASW-MSFDTEPPVIKWTPGSLMFV-TGSSE--LSFWIPDLSK  324 (332)
Q Consensus       261 pdg~~l~sg---s~Dg~i~vWd~~~~~~-~~~~-~~~~~~v~~l~~sp~~~~l~-t~~~d--~~~w~~~~~~  324 (332)
                      |++++|++|   +.|+.|++||+.+++. +... ..|...+.+++|+|++++|+ +++.|  +++|+....+
T Consensus       230 ~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          230 SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            999999999   8999999999988664 2222 35677899999999998875 55445  9999886554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.6e-30  Score=238.51  Aligned_cols=248  Identities=12%  Similarity=0.232  Sum_probs=191.4

Q ss_pred             ccceeEeccCC------------CcEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCeee--------------------
Q 020021           24 MEVGMSFRDYN------------GRISSMDFHKSS--SYLVTASDDESIRLYDVTAATCL--------------------   69 (332)
Q Consensus        24 ~~~~~~l~~h~------------~~I~~i~~s~dg--~~l~tgs~D~tv~iwd~~~~~~~--------------------   69 (332)
                      .++...|.+|.            +.|.+++|+|++  .+|++++.|++|++||+.++...                    
T Consensus        71 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~  150 (447)
T 3dw8_B           71 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVT  150 (447)
T ss_dssp             EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCC
T ss_pred             eeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCccccc
Confidence            34677899998            889999999998  79999999999999999764432                    


Q ss_pred             -------------------EE-eeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC-CceEE-------Eeeccc
Q 020021           70 -------------------KT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYLR-------YFKGHH  121 (332)
Q Consensus        70 -------------------~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~-~~~~~-------~~~~h~  121 (332)
                                         .. ...|...|..++|++++..++++ .   |+.|++||+.. ++.+.       .+.+|.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  226 (447)
T 3dw8_B          151 TLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D---DLRINLWHLEITDRSFNIVDIKPANMEELT  226 (447)
T ss_dssp             SCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C---SSEEEEEETTEEEEEEEEEECCCSSGGGCC
T ss_pred             ceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C---CCeEEEEECCCCCceeeeeecccccccccC
Confidence                               12 24678889999999999988876 3   88999999984 44444       356899


Q ss_pred             ccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceE----EEEEEec--------------CceeEEEcCCCeEEEEEeCC
Q 020021          122 DRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKC----QGLLRVQ--------------GRPAAAYDDQGLVFAVAFGG  182 (332)
Q Consensus       122 ~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~----~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~  182 (332)
                      ..|++++|+|++ ++|++++.||+|++||+++++.    ...+..+              ......+++++.+++++.++
T Consensus       227 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  306 (447)
T 3dw8_B          227 EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYL  306 (447)
T ss_dssp             CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESS
T ss_pred             cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCC
Confidence            999999999998 9999999999999999988775    4444433              33456778888777777669


Q ss_pred             EEEEEECccCCCCCeeEEEecCCCC---------------CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec
Q 020021          183 YIRMFDARKYEKGPFDIFSVGGDIS---------------DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (332)
Q Consensus       183 ~i~vwd~~~~~~~~~~~~~~~~~~~---------------~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (332)
                      .|++||++.... ....+.  ++..               .+..++|+|+|+++++++.||.|++||+.+++.+. +...
T Consensus       307 ~v~iwd~~~~~~-~~~~~~--~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~  382 (447)
T 3dw8_B          307 SVKVWDLNMENR-PVETYQ--VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEAS  382 (447)
T ss_dssp             EEEEEETTCCSS-CSCCEE--SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECC
T ss_pred             eEEEEeCCCCcc-ccceee--ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeec
Confidence            999999986222 122222  2211               12348999999999999999999999999887653 1111


Q ss_pred             ------------------------------CCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          248 ------------------------------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       248 ------------------------------~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                                                    ......+..++|+|++++||+++.++ +++|.-
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          383 RENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             STTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             ccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence                                          01234567899999999999998776 888874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.98  E-value=6.4e-30  Score=233.33  Aligned_cols=279  Identities=15%  Similarity=0.218  Sum_probs=189.2

Q ss_pred             ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC---EEEEecCCCCCceeEEE
Q 020021           31 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLL  106 (332)
Q Consensus        31 ~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~s~~g~d~~v~v~  106 (332)
                      .+|.+.|.+++|+| ++.+|++++.|++|++||+.+++++..+. +...+..+++.+.+.   .+++++.   |+.+++|
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~  171 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTR---GPKVQLC  171 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEES---SSSEEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcC---CCeEEEE
Confidence            36999999999999 77899999999999999999999888776 455678888888554   6666654   7899999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCce-EEEEEE---------------e--cCceeE
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEK-CQGLLR---------------V--QGRPAA  167 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~-~~~~~~---------------~--~~~~~~  167 (332)
                      |+.+++.+..+.+|...|.+++|+|+++ .|++++.||.|++||++.+. +...+.               .  ......
T Consensus       172 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          172 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             ESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             eCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            9999999999999999999999999998 59999999999999997654 222210               0  112345


Q ss_pred             EEcCCCe-EEEEEeCCEEEEEECccCCCCCeeEEE-ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021          168 AYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFS-VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       168 ~~~~~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~-~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (332)
                      .+++++. +++++.|+.|++||++..+........ ................+..+++++.++.|++||+.+++.+..+.
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  331 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK  331 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence            6777775 555556899999999865421110000 00111122223334445667777889999999999999888775


Q ss_pred             ecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCC-eeEEEeccce--EEEec
Q 020021          246 VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSE--LSFWI  319 (332)
Q Consensus       246 ~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~t~~~d--~~~w~  319 (332)
                         .|...+..++|+|++++|++|+.||.|++||+.+++.+.....+.   ....+.|. ...+.+.+.+  +++|.
T Consensus       332 ---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          332 ---GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             ---CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------
T ss_pred             ---cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCceeecC
Confidence               466789999999999999999999999999999988765543322   22334443 3344444444  77775

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=1.1e-28  Score=224.90  Aligned_cols=264  Identities=12%  Similarity=0.114  Sum_probs=207.3

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI   92 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (332)
                      +.+++-  ...+..+.+.+|.. +.+++|+|++++| ++++.|++|++||+.+++++..+..+. .+..++|+|+++.++
T Consensus        14 v~v~d~--~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~   89 (391)
T 1l0q_A           14 ISVIDV--TSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVY   89 (391)
T ss_dssp             EEEEET--TTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEE
T ss_pred             EEEEEC--CCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEE
Confidence            444442  34466677777765 8999999999976 778899999999999999998887665 789999999999887


Q ss_pred             EecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeE-EEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEc
Q 020021           93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYD  170 (332)
Q Consensus        93 ~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l-~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~  170 (332)
                      ++..  .++.|++||+.+++.+..+..| ..+.+++|+|+++.+ ++++.|+.|++||++++++...+..... ....++
T Consensus        90 ~~~~--~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  166 (391)
T 1l0q_A           90 VTNM--ASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT  166 (391)
T ss_dssp             EEET--TTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEEC
T ss_pred             EEEC--CCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEEC
Confidence            6643  3689999999999988887755 468999999999977 7889999999999999888777665433 345677


Q ss_pred             CCCeEE-EEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc---CCCeEEEEEccCCeEeEEee
Q 020021          171 DQGLVF-AVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       171 ~~~~~~-~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~---~dg~i~i~d~~~~~~~~~~~  245 (332)
                      +++..+ .++ .++.|++||++....  .....   +...+..++|+|+|+++++++   .++.|++||+.+++.+..+.
T Consensus       167 ~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~  241 (391)
T 1l0q_A          167 PDGTKVYVANFDSMSISVIDTVTNSV--IDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP  241 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEE--EEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeE--EEEEe---cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe
Confidence            777544 333 468999999975421  11222   234678899999999988887   68999999999998877765


Q ss_pred             ecCCCCCcceEEEECCCCCEE-EEEcCCCcEEEEECCCCceEEEecCCC
Q 020021          246 VKPVSRNSTLEASFSPEGMFV-ISGSGDGSVYAWSVRSGKEVASWMSFD  293 (332)
Q Consensus       246 ~~~~~~~~~~~v~~spdg~~l-~sgs~Dg~i~vWd~~~~~~~~~~~~~~  293 (332)
                      .   + ..+..++|+|||++| ++++.|+.|++||+.+++.+..+..+.
T Consensus       242 ~---~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~  286 (391)
T 1l0q_A          242 V---G-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK  286 (391)
T ss_dssp             C---C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             c---C-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence            3   2 245679999999988 677899999999999998887775554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-30  Score=243.40  Aligned_cols=264  Identities=8%  Similarity=0.021  Sum_probs=196.2

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++.+++.+|.+.|++++|+|+|       .|+++++|+.+   +...+. .+...|..++|+|++..+++++.   |++|
T Consensus        43 ~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~---~~~~~~~~~~~~V~~vawSPdG~~LAs~s~---dg~V  109 (588)
T 2j04_A           43 KYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQ---QNGLLNSQPVCYPRVCKPSPIDDWMAVLSN---NGNV  109 (588)
T ss_dssp             CCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCC---SSCSSTTSCSCCEEEEEECSSSSCEEEEET---TSCE
T ss_pred             cccceecCCCccEEEEEECCCC-------CcceEEEEeCC---CceEeecCCCCcEEEEEECCCCCEEEEEeC---CCcE
Confidence            4445668999999999999999       56666666543   322232 33667999999999999998875   7899


Q ss_pred             EEEEccCCceEEEeecccc-----cEEEEEecCCCCeEEEeeCCCcEEEEeCCCceE-------EEEEEec------Cce
Q 020021          104 RLLSLHDNKYLRYFKGHHD-----RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-------QGLLRVQ------GRP  165 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~-----~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~-------~~~~~~~------~~~  165 (332)
                      ++||.++  .+..+. |..     .|.+++|+|||++|++|+.||+|++||+++++.       ...++..      ...
T Consensus       110 ~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~  186 (588)
T 2j04_A          110 SVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVT  186 (588)
T ss_dssp             EEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEE
T ss_pred             EEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEE
Confidence            9999644  666677 765     499999999999999999999999999988752       3444321      234


Q ss_pred             eEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEe-cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe
Q 020021          166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (332)
                      ...++|++ +++++.|+.|++||+........ ...+ .++...|.+++|+  |+.+++++ +++|++||...++.....
T Consensus       187 sVawSPdg-Laass~D~tVrlWd~~~~~~~~~-~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~  261 (588)
T 2j04_A          187 HIVWYEDV-LVAALSNNSVFSMTVSASSHQPV-SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK  261 (588)
T ss_dssp             EEEEETTE-EEEEETTCCEEEECCCSSSSCCC-EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCc-EEEEeCCCeEEEEECCCCccccc-eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE
Confidence            56788888 88888899999999875432110 1112 2566789999999  68888887 699999999887763322


Q ss_pred             eecCCCCCcceEEEE--CCCCCEEEEEcCCCcEEEEECCC------Cce-------EEEec---------CCCCCCceEE
Q 020021          245 NVKPVSRNSTLEASF--SPEGMFVISGSGDGSVYAWSVRS------GKE-------VASWM---------SFDTEPPVIK  300 (332)
Q Consensus       245 ~~~~~~~~~~~~v~~--spdg~~l~sgs~Dg~i~vWd~~~------~~~-------~~~~~---------~~~~~v~~l~  300 (332)
                      .   .|...+..++|  +||+..|+++++||+ ++|....      +..       +..+.         .++..|.+++
T Consensus       262 ~---gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va  337 (588)
T 2j04_A          262 T---GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGIS  337 (588)
T ss_dssp             C---SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEE
T ss_pred             c---CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEE
Confidence            1   46788899999  999999999999999 9998742      100       00000         1122367899


Q ss_pred             eCCCeeEEEeccc
Q 020021          301 WTPGSLMFVTGSS  313 (332)
Q Consensus       301 ~sp~~~~l~t~~~  313 (332)
                      |||||+.+|+++.
T Consensus       338 ~SPdG~~lA~~~~  350 (588)
T 2j04_A          338 LSPDGYSIAIVYD  350 (588)
T ss_dssp             ECTTSSEEEEEEE
T ss_pred             ECCCCCEEEEEEe
Confidence            9999999999875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.3e-28  Score=222.75  Aligned_cols=262  Identities=13%  Similarity=0.114  Sum_probs=207.3

Q ss_pred             CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEE
Q 020021           47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS  126 (332)
Q Consensus        47 ~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~  126 (332)
                      .++++++.|++|++||+.+++++..+..+. .+..++|++++..++++.  +.|+.|++||+.+++.+..+..|. .+.+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~--~~d~~i~v~d~~~~~~~~~~~~~~-~v~~   78 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVAN--AHSNDVSIIDTATNNVIATVPAGS-SPQG   78 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEE--GGGTEEEEEETTTTEEEEEEECSS-SEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEEC--CCCCeEEEEECCCCeEEEEEECCC-Cccc
Confidence            468899999999999999999999888765 478999999999875543  237899999999999888887665 8999


Q ss_pred             EEecCCCCeEE-EeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEE-EEE-eCCEEEEEECccCCCCCeeEEEe
Q 020021          127 LSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVF-AVA-FGGYIRMFDARKYEKGPFDIFSV  202 (332)
Q Consensus       127 v~~~~~~~~l~-s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~i~vwd~~~~~~~~~~~~~~  202 (332)
                      ++|+|++++|+ +++.|++|++||+++++....+..... ....+++++..+ .++ .++.|++||++..+  ....+. 
T Consensus        79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~-  155 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--VINTVS-  155 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEE-
T ss_pred             eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEe-
Confidence            99999999774 556789999999999988776665433 355677777544 333 47999999987532  112222 


Q ss_pred             cCCCCCceeEEEcCCCCEE-EEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc---CCCcEEEE
Q 020021          203 GGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVYAW  278 (332)
Q Consensus       203 ~~~~~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs---~Dg~i~vW  278 (332)
                       .+ ..+..++|+|+|+.+ ++++.++.|++||+.+++.+..+.    +...+..++|+|+|++|++++   .|+.|++|
T Consensus       156 -~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          156 -VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             -CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             -cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence             22 346889999999877 677889999999999998876664    234667899999999999998   68999999


Q ss_pred             ECCCCceEEEecCCCCCCceEEeCCCeeEE-Eeccce--EEEecccc
Q 020021          279 SVRSGKEVASWMSFDTEPPVIKWTPGSLMF-VTGSSE--LSFWIPDL  322 (332)
Q Consensus       279 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~t~~~d--~~~w~~~~  322 (332)
                      |+.+++.+..+..+. .+.+++|+|+++.+ ++++.|  +++|+...
T Consensus       230 d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          230 DTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             ETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            999998888777665 47889999999766 665554  88888754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.9e-29  Score=223.29  Aligned_cols=255  Identities=19%  Similarity=0.256  Sum_probs=169.8

Q ss_pred             cceeEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEEcCCC---------eeeEEeeecccceeEEEEccC--CCEE
Q 020021           25 EVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAA---------TCLKTINSKKYGVDLVCFTSH--PTTV   91 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~--dg~~l~tgs~D~tv~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~   91 (332)
                      +....+.+|.++|.+++|+|  ++++|++|+.|++|++||+.++         +++..+..|...+..++|+++  +..+
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            56778899999999999999  6999999999999999999887         567788888899999999999  8888


Q ss_pred             EEecCCCCCceeEEEEccCCceEEEee-------------cccccEEEEEecCC---CCeEEEeeCCCcEEEEeCCCceE
Q 020021           92 IYSSKNGWDESLRLLSLHDNKYLRYFK-------------GHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKC  155 (332)
Q Consensus        92 ~~~s~~g~d~~v~v~d~~~~~~~~~~~-------------~h~~~V~~v~~~~~---~~~l~s~s~Dg~i~iWd~~~~~~  155 (332)
                      ++++.   |+.|++||+.+++.+..+.             +|...+.+++|+|+   ++.+++++.|+.+.+|+...++.
T Consensus       128 ~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~  204 (351)
T 3f3f_A          128 ACLGN---DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL  204 (351)
T ss_dssp             EEEET---TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE
T ss_pred             EEecC---CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce
Confidence            88764   8899999998877544332             68889999999997   89999999999998888777654


Q ss_pred             EEEEEec----CceeEEEcCCC-----eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc-
Q 020021          156 QGLLRVQ----GRPAAAYDDQG-----LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-  225 (332)
Q Consensus       156 ~~~~~~~----~~~~~~~~~~~-----~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~-  225 (332)
                      .......    ......+++++     .+++++.|+.|++||++...    .................+++......+. 
T Consensus       205 ~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (351)
T 3f3f_A          205 HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL----SPLASEESLTNSNMFDNSADVDMDAQGRS  280 (351)
T ss_dssp             EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------
T ss_pred             eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc----CccccCCcccceeccCCCccccccccccc
Confidence            3222221    12234555553     34444456667777665321    1111111111222222333333322222 


Q ss_pred             ---CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe
Q 020021          226 ---MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW  289 (332)
Q Consensus       226 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~  289 (332)
                         ....+.+|+....+.+..+.   .|...+.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          281 DSNTEEKAELQSNLQVELLSEHD---DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ----------CCSEEEEEEEEEC---TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             ccccceeeeecccccccEEEEEe---cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence               22233444433334444443   56778999999999999999999999999999987665544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.5e-28  Score=222.25  Aligned_cols=244  Identities=15%  Similarity=0.159  Sum_probs=173.3

Q ss_pred             EEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeE-EE
Q 020021           60 LYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-IS  138 (332)
Q Consensus        60 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l-~s  138 (332)
                      ||+..+.+.+.++..|...|.+++|++++..+++++    +..+++||++.++.+....  ...+..+++.++++.+ ++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~----~~~~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   76 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILST----LKSFEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFV   76 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEEC----SSEEEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEc----CCEEEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEE
Confidence            566777777778888999999999999999888775    3458999998876554433  2357778888888776 67


Q ss_pred             eeCCCcEEEEeCCCceEEEEEEecCce-eEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC
Q 020021          139 GSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  217 (332)
Q Consensus       139 ~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d  217 (332)
                      ++.|++|++||.+++++...+..+... ...++++  .+.++.++.|++||+..... .+..+..     ....+++++ 
T Consensus        77 ~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~-~~~~~~~-----~~~~~~~s~-  147 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWK-RITDDIR-----FGGVCEFSN-  147 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCC-BSSCCEE-----EEEEEEEET-
T ss_pred             ECCccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCce-eeEEecc-----CCceEEEEc-
Confidence            888999999999999888777654422 2333333  34456799999999986511 1111110     234567777 


Q ss_pred             CCEEEE--EcCCCeEEEEEccCCeE----------------eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCc-EEEE
Q 020021          218 GRLMLL--TTMEGHIHVLDSFRGTL----------------LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS-VYAW  278 (332)
Q Consensus       218 g~~l~~--~~~dg~i~i~d~~~~~~----------------~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~-i~vW  278 (332)
                       .+++.  ++.+|.|++||+.++..                +..+.   .|...+.+++|+|||++||+|+.||+ |+||
T Consensus       148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNRKSDMVATCSQDGTIIRVF  223 (355)
T ss_dssp             -TEEEEEESSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred             -cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence             55655  58899999999987651                33333   57788999999999999999999999 9999


Q ss_pred             ECCCCceEEEec-C-CCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          279 SVRSGKEVASWM-S-FDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       279 d~~~~~~~~~~~-~-~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                      |+.+++.+..+. + |...|.+++|+|++++|++++.|  +++|+...
T Consensus       224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence            999999999987 4 99999999999999999999887  88887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=3.9e-29  Score=220.50  Aligned_cols=199  Identities=10%  Similarity=0.123  Sum_probs=145.8

Q ss_pred             cEEEEEECCC----CCEEEEEeC--------------------CCcEEEEEc-CCCeeeEEeeecccceeEEEEcc---C
Q 020021           36 RISSMDFHKS----SSYLVTASD--------------------DESIRLYDV-TAATCLKTINSKKYGVDLVCFTS---H   87 (332)
Q Consensus        36 ~I~~i~~s~d----g~~l~tgs~--------------------D~tv~iwd~-~~~~~~~~~~~~~~~v~~~~~~~---~   87 (332)
                      .|.+|+|+||    +.++++++.                    |++|++|++ .+++.+..+..|...+..++|++   +
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~  192 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM  192 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred             ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence            5667777778    777877663                    999999999 45888888888888899999998   6


Q ss_pred             CCEEEEecCCCCCceeEEEEccCCceEEEeecccc---cEEEEEecCCCCeE------------EEeeCCCcEEEEeCCC
Q 020021           88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD---RVVSLSLCSSKDCF------------ISGSLDRTVLLWDQRA  152 (332)
Q Consensus        88 ~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~---~V~~v~~~~~~~~l------------~s~s~Dg~i~iWd~~~  152 (332)
                      +..+++++.   |++||+||++++++++++.+|..   .+.+++|+|+++++            +||+.|++|++||..+
T Consensus       193 ~~~LaSgS~---D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t  269 (356)
T 2w18_A          193 QEALLGTTI---MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT  269 (356)
T ss_dssp             TTEEEEEET---TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred             CceEEEecC---CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence            677777754   99999999999999999987654   56777899999887            5566777777777776


Q ss_pred             ceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021          153 EKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (332)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i  232 (332)
                      +++...+..                          .+            ..++...  .+..+.++.++++++.|++|+|
T Consensus       270 gk~l~v~~~--------------------------~~------------p~Gh~~~--~lsg~~sg~~lASgS~DgTIkI  309 (356)
T 2w18_A          270 TLSVGVMLY--------------------------CL------------PPGQAGR--FLEGDVKDHCAAAILTSGTIAI  309 (356)
T ss_dssp             TEEEEEEEE--------------------------CC------------CTTCCCC--EEEEEEETTEEEEEETTSCEEE
T ss_pred             CEEEEEEEe--------------------------ec------------cCCCcce--eEccccCCCEEEEEcCCCcEEE
Confidence            665432210                          00            0112111  2233444888999999999999


Q ss_pred             EEccCCeEeEEeeecCCCCCcc-eEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          233 LDSFRGTLLSTYNVKPVSRNST-LEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       233 ~d~~~~~~~~~~~~~~~~~~~~-~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      ||+.+++.+.++.   .|...+ ..++|||||++|+||+.|++|+|||+
T Consensus       310 WDl~tGk~l~tL~---gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          310 WDLLLGQCTALLP---PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EETTTCSEEEEEC---CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EECCCCcEEEEec---CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999998876   333433 35899999999999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.1e-28  Score=221.76  Aligned_cols=257  Identities=12%  Similarity=0.104  Sum_probs=193.8

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEE--ccCCCEE
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF--TSHPTTV   91 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~   91 (332)
                      +.+|+---........+.+|.+.|.+++|+|++++|++++.|++|++||+.+++++. +..|...|..++|  ++++..+
T Consensus        66 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l  144 (368)
T 3mmy_A           66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCV  144 (368)
T ss_dssp             EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEE
T ss_pred             EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEE
Confidence            444443222344457899999999999999999999999999999999999998776 5568888999999  7777778


Q ss_pred             EEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe----cCceeE
Q 020021           92 IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----QGRPAA  167 (332)
Q Consensus        92 ~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~----~~~~~~  167 (332)
                      ++++.   |+.|++||+.+++.+..+..|. .+.++.+.+  ..++.++.|+.+++||++..........    ......
T Consensus       145 ~~~~~---dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (368)
T 3mmy_A          145 MTGSW---DKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCV  218 (368)
T ss_dssp             EEEET---TSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEE
T ss_pred             EEccC---CCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceE
Confidence            77764   8899999999999888888775 566666654  5889999999999999977643322211    111122


Q ss_pred             EEc-CCC----eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCC------------CceeEEEcCCCCEEEEEcCCCeE
Q 020021          168 AYD-DQG----LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS------------DANVVKFSNDGRLMLLTTMEGHI  230 (332)
Q Consensus       168 ~~~-~~~----~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~------------~v~~v~~s~dg~~l~~~~~dg~i  230 (332)
                      .+. ...    .+++++.++.|++||++..... .......++..            .+.+++|+|+++++++++.||.|
T Consensus       219 ~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i  297 (368)
T 3mmy_A          219 AIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF  297 (368)
T ss_dssp             EEEECTTSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCE
T ss_pred             EEcccCCCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeE
Confidence            221 111    2667777999999999764320 01111222222            58999999999999999999999


Q ss_pred             EEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021          231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                      ++||+.+++.+..+.   .|...+..++|+|||++|++|+.|+..+.|++-
T Consensus       298 ~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          298 SFWDKDARTKLKTSE---QLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             EEEETTTTEEEEECC---CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             EEEECCCCcEEEEec---CCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence            999999999887775   456789999999999999999999865555543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=6.8e-29  Score=221.76  Aligned_cols=248  Identities=13%  Similarity=0.102  Sum_probs=193.1

Q ss_pred             eeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc---eEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEE
Q 020021           72 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLL  147 (332)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~---~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~i  147 (332)
                      ...|...|..++|+|++..+++++.   |+.|++||+.+++   ....+.+|...|.+++|+|+++ +|++++.||.|++
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSW---DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEET---TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcC---CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            4568888999999999999888764   8899999998877   3556679999999999999999 9999999999999


Q ss_pred             EeC-CCceEEEEEEe--c--CceeEEEcCCCeEEEEEeCCEEEEEECcc---------CCCCCeeEEEecCCCCCceeEE
Q 020021          148 WDQ-RAEKCQGLLRV--Q--GRPAAAYDDQGLVFAVAFGGYIRMFDARK---------YEKGPFDIFSVGGDISDANVVK  213 (332)
Q Consensus       148 Wd~-~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~i~vwd~~~---------~~~~~~~~~~~~~~~~~v~~v~  213 (332)
                      ||+ .+++.. .+..  +  ......+.+...+++++.|+.|++||++.         .+.  ..  .. .+...+.+++
T Consensus        84 wd~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~--~~-~~~~~v~~~~  157 (342)
T 1yfq_A           84 VDLIGSPSFQ-ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN--SN--NT-KVKNKIFTMD  157 (342)
T ss_dssp             ECSSSSSSEE-ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC--SS--SS-SSCCCEEEEE
T ss_pred             EEeccCCceE-eccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCe--ee--EE-eeCCceEEEE
Confidence            999 877653 2222  2  12345556655667777899999999875         221  11  11 1446789999


Q ss_pred             EcCCCCEEEEEcCCCeEEEEEccC-CeEeEEeeecCCCCCcceEEEECC-CCCEEEEEcCCCcEEEEECCCC------ce
Q 020021          214 FSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVYAWSVRSG------KE  285 (332)
Q Consensus       214 ~s~dg~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~sp-dg~~l~sgs~Dg~i~vWd~~~~------~~  285 (332)
                      |+|++  +++++.++.|++||+.+ +........ ..+...+.+++|+| +++++++++.||.|++|++...      +.
T Consensus       158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~  234 (342)
T 1yfq_A          158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK  234 (342)
T ss_dssp             ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred             ecCCc--EEEEeCCCeEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence            99988  89999999999999987 543211111 23456788999999 9999999999999999999876      66


Q ss_pred             EEEecCCCC---------CCceEEeCCCeeEEEeccce--EEEeccc-cccccccccc
Q 020021          286 VASWMSFDT---------EPPVIKWTPGSLMFVTGSSE--LSFWIPD-LSKLGAYVGR  331 (332)
Q Consensus       286 ~~~~~~~~~---------~v~~l~~sp~~~~l~t~~~d--~~~w~~~-~~~~~~~~~~  331 (332)
                      +..+..|..         .|.+++|+|++++|++++.|  +++|+.. .+.+..+.++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence            777777755         89999999999999999877  8889875 3345555443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8e-29  Score=245.19  Aligned_cols=227  Identities=15%  Similarity=0.172  Sum_probs=183.6

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccC--
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSH--   87 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~d--g~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--   87 (332)
                      +.+|+---...+....+.+|.++|.+++|+|+  +++|++|+.|++|++||+.+++  .+..+..|...|..++|+|+  
T Consensus        33 I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~  112 (753)
T 3jro_A           33 IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY  112 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG
T ss_pred             EEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCC
Confidence            45554322355677889999999999999988  9999999999999999999887  67778889899999999999  


Q ss_pred             CCEEEEecCCCCCceeEEEEccCCc--eEEEeecccccEEEEEecC-------------CCCeEEEeeCCCcEEEEeCCC
Q 020021           88 PTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCS-------------SKDCFISGSLDRTVLLWDQRA  152 (332)
Q Consensus        88 ~~~~~~~s~~g~d~~v~v~d~~~~~--~~~~~~~h~~~V~~v~~~~-------------~~~~l~s~s~Dg~i~iWd~~~  152 (332)
                      +..+++++.   |+.|++||+.++.  ....+.+|...|.+++|+|             +++.|++|+.||+|++||+++
T Consensus       113 ~~~l~sgs~---dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~  189 (753)
T 3jro_A          113 GPLLLVASS---DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS  189 (753)
T ss_dssp             CSEEEEEET---TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEET
T ss_pred             CCEEEEEeC---CCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccC
Confidence            888888764   8899999998763  4566789999999999999             589999999999999999865


Q ss_pred             ceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC---CCEEEEEcCCCe
Q 020021          153 EKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---GRLMLLTTMEGH  229 (332)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d---g~~l~~~~~dg~  229 (332)
                      +......                                       .....+|...+.+++|+|+   ++++++++.||.
T Consensus       190 ~~~~~~~---------------------------------------~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          190 DAQTYVL---------------------------------------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             TTTEEEE---------------------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred             Cccccee---------------------------------------eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence            4321100                                       0112245567899999999   999999999999


Q ss_pred             EEEEEccCCeEeE--EeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          230 IHVLDSFRGTLLS--TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       230 i~i~d~~~~~~~~--~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      |++||+.++....  .......+...+.+++|+|+|++|++|+.||.|++||+.+
T Consensus       231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9999998764211  1111223567788999999999999999999999999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2e-27  Score=221.32  Aligned_cols=245  Identities=12%  Similarity=0.062  Sum_probs=187.7

Q ss_pred             EeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEEcC--CCeeeEEee--ecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           29 SFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVT--AATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      .+.+|.+.|.+++|+|++++| ++|+.|++|+|||+.  ++++++.+.  .+...+..++|+|++..+++++.   ++.+
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---~g~v  173 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK---FGDV  173 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---TSEE
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC---CCcE
Confidence            456788899999999999996 999999999999999  888888887  44567899999999999988864   7889


Q ss_pred             EEEEccCCceEE----EeecccccEEEEEecCC---CCeEEEeeCCCcEEEEeCCCceEEEEEE-ec--CceeEEEcCCC
Q 020021          104 RLLSLHDNKYLR----YFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLLR-VQ--GRPAAAYDDQG  173 (332)
Q Consensus       104 ~v~d~~~~~~~~----~~~~h~~~V~~v~~~~~---~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~~--~~~~~~~~~~~  173 (332)
                      ++|++.+++...    .+.+|...|++++|+|+   +++|++++.|++|++||++++++...+. .+  ......++...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~  253 (450)
T 2vdu_B          174 YSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDY  253 (450)
T ss_dssp             EEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTT
T ss_pred             EEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCC
Confidence            999998876544    78899999999999999   9999999999999999999887665532 22  23455666333


Q ss_pred             eEEEEEeCCEEEEEECccCCCCCeeEEEec-----------------------CCCCCceeEEEcCCCCEEEEEc-CCCe
Q 020021          174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVG-----------------------GDISDANVVKFSNDGRLMLLTT-MEGH  229 (332)
Q Consensus       174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~-----------------------~~~~~v~~v~~s~dg~~l~~~~-~dg~  229 (332)
                      .+++++.|+.|++||++..+.  ...+...                       .....+..++++|+++++++++ .++.
T Consensus       254 ~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~  331 (450)
T 2vdu_B          254 LLLSAGGDDKIFAWDWKTGKN--LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC  331 (450)
T ss_dssp             EEEEEESSSEEEEEETTTCCE--EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred             EEEEEeCCCeEEEEECCCCcE--eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence            555666789999999976431  2222211                       1123578899999999999988 8999


Q ss_pred             EEEEEc--cCC---eEeEEeeecCCCCCcceEEEECCCCCEEEEEcC------CCcEEEEECCC
Q 020021          230 IHVLDS--FRG---TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG------DGSVYAWSVRS  282 (332)
Q Consensus       230 i~i~d~--~~~---~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~------Dg~i~vWd~~~  282 (332)
                      |++||+  ..+   +.+..+.   .+ ..+..++|+|++.+++.++.      +..|++|.+..
T Consensus       332 i~iw~~~~~~~~~l~~~~~~~---~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          332 IIILEMSEKQKGDLALKQIIT---FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEEECSSSTTCEEEEEEEE---CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEEEEeccCCCCceeeccEec---cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            999999  555   4555444   23 67889999996555554453      45688887643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=3.5e-28  Score=222.82  Aligned_cols=223  Identities=9%  Similarity=0.029  Sum_probs=156.3

Q ss_pred             ceeEeccCCCcEEEEEECC--------CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCE-EEEecC
Q 020021           26 VGMSFRDYNGRISSMDFHK--------SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT-VIYSSK   96 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~--------dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~s~   96 (332)
                      ....|.||++.|++|+|+|        |+++|||||.|++|||||+.++.++..+..|...+..++|+|++.. +++++ 
T Consensus       128 ~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-  206 (393)
T 4gq1_A          128 VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGE-  206 (393)
T ss_dssp             EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEE-
T ss_pred             eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecC-
Confidence            3455789999999999998        8899999999999999999998888888888889999999998864 55554 


Q ss_pred             CCCCceeEEEEccCCceEEE-------------------------eecccccEEEEEec-CCCCeEEEeeCCCcEEEEeC
Q 020021           97 NGWDESLRLLSLHDNKYLRY-------------------------FKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQ  150 (332)
Q Consensus        97 ~g~d~~v~v~d~~~~~~~~~-------------------------~~~h~~~V~~v~~~-~~~~~l~s~s~Dg~i~iWd~  150 (332)
                        .|++|++||+.+++....                         ..+|...|.++.|+ ++++.+++++.|+++++||+
T Consensus       207 --~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~  284 (393)
T 4gq1_A          207 --RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNL  284 (393)
T ss_dssp             --TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC
T ss_pred             --CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEEC
Confidence              389999999987754322                         24688889999987 79999999999999999999


Q ss_pred             CCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC--CCCEEEEEcCCC
Q 020021          151 RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN--DGRLMLLTTMEG  228 (332)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~--dg~~l~~~~~dg  228 (332)
                      ..++....+....                    ..++.....  ...  ....... ....+.++|  ++.++++++.||
T Consensus       285 ~~~~~~~~l~~~~--------------------~~~~~~~~~--~~~--~~~~~~~-~~~~~~~~~~~~~~~~~sgs~Dg  339 (393)
T 4gq1_A          285 FANNDYNEISDST--------------------MKLGPKNLL--PNV--QGISLFP-SLLGACPHPRYMDYFATAHSQHG  339 (393)
T ss_dssp             ---------------------------------------CCS--CSE--EEECSSC-CSSCCEECSSCTTEEEEEETTTT
T ss_pred             ccCCCCceEeeec--------------------CccccEEEc--ccc--ccccccC-cceeEEEccCCCCEEEEEECCCC
Confidence            8765443332111                    011111100  000  0111111 122334444  456777889999


Q ss_pred             eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                      .|++||..+++......   .+..+|.+++|||||++||+++.|| +.+|.+
T Consensus       340 ~V~lwd~~~~~~~~~~~---~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          340 LIQLINTYEKDSNSIPI---QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EEEEEETTCTTCCEEEE---ECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEEEEECCCCcEEEEec---CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            99999999988776554   3456899999999999999998777 556654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2e-26  Score=212.70  Aligned_cols=242  Identities=11%  Similarity=0.175  Sum_probs=195.8

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      .+.+|.+.|.+++|+|++.++++++.|++|++||+.+++++..+..+...+..++|++++..++++..  .|+.|++||+
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~i~~~d~  241 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW--ISEDISVIDR  241 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET--TTTEEEEEET
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec--CCCcEEEEEC
Confidence            45689999999999999999999999999999999999999999888888999999999998866542  3789999999


Q ss_pred             cCCceEEEeecccccEEEEEecCCCCeEEEee--------CCCcEEEEeCCCceEEEEEEec-CceeEEEcCCCe-EEEE
Q 020021          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS--------LDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGL-VFAV  178 (332)
Q Consensus       109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s--------~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~  178 (332)
                      .+++.+..+..+ ..+.+++|+|+++.+++++        .|+.|++||+++++....+... ......+++++. ++.+
T Consensus       242 ~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  320 (433)
T 3bws_A          242 KTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS  320 (433)
T ss_dssp             TTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE
T ss_pred             CCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE
Confidence            999888887765 4589999999999999988        4889999999988876655332 233456777764 4444


Q ss_pred             -EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC---------------CCeEEEEEccCCeEeE
Q 020021          179 -AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---------------EGHIHVLDSFRGTLLS  242 (332)
Q Consensus       179 -~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~---------------dg~i~i~d~~~~~~~~  242 (332)
                       ..++.|++||+...+  ....+.   +...+..++|+|+|+++++++.               ||.|++||..+++.+.
T Consensus       321 ~~~~~~v~v~d~~~~~--~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~  395 (433)
T 3bws_A          321 DMCCSKIEVYDLKEKK--VQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE  395 (433)
T ss_dssp             ETTTTEEEEEETTTTE--EEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred             ecCCCEEEEEECCCCc--EEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence             457999999987532  111222   3356789999999998888766               5799999999999887


Q ss_pred             EeeecCCCCCcceEEEECCCCCEEEEEcC-CCcEEEEECCC
Q 020021          243 TYNVKPVSRNSTLEASFSPEGMFVISGSG-DGSVYAWSVRS  282 (332)
Q Consensus       243 ~~~~~~~~~~~~~~v~~spdg~~l~sgs~-Dg~i~vWd~~~  282 (332)
                      .+..    ...+..++|+|||++|++++. |++|++|++..
T Consensus       396 ~~~~----~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          396 FWEA----GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEC----SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EecC----CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            7653    345778999999999998865 99999999853

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=6.8e-27  Score=215.85  Aligned_cols=285  Identities=13%  Similarity=0.111  Sum_probs=207.3

Q ss_pred             CCcEEEEEECCCC-CEEEEEe----CCC----cEEEEEc--CCCeee--EEeeecccceeEEEEcc--------------
Q 020021           34 NGRISSMDFHKSS-SYLVTAS----DDE----SIRLYDV--TAATCL--KTINSKKYGVDLVCFTS--------------   86 (332)
Q Consensus        34 ~~~I~~i~~s~dg-~~l~tgs----~D~----tv~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~--------------   86 (332)
                      ...|....|.+.| .++++|+    .||    +++|||+  .+++++  ..+..|...+..+++.+              
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            3467777888887 4666887    467    9999999  899887  45777776666555543              


Q ss_pred             CCCEEEEecCCCCC---ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC---cEEEEeCCCceEEEEEE
Q 020021           87 HPTTVIYSSKNGWD---ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQGLLR  160 (332)
Q Consensus        87 ~~~~~~~~s~~g~d---~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg---~i~iWd~~~~~~~~~~~  160 (332)
                      .+..+++++..+.+   ++|++||+.. .....+.+|...|.+++|+|+|++|++++.|+   +|++||++++++.....
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~  220 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS  220 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec
Confidence            25566666543223   7999999974 45678889999999999999999999999886   99999999887754332


Q ss_pred             ecC-ceeEEEcCCCeEEE-EEe-C--CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC-CC--eEEE
Q 020021          161 VQG-RPAAAYDDQGLVFA-VAF-G--GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EG--HIHV  232 (332)
Q Consensus       161 ~~~-~~~~~~~~~~~~~~-~~~-~--~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~-dg--~i~i  232 (332)
                      ... .....+++++..++ ++. +  ..|.+||++..+   .  ..+..+...+..++|||||+.+++++. ++  .|++
T Consensus       221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~--~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~  295 (415)
T 2hqs_A          221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---I--RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK  295 (415)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---E--EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---E--EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence            222 34567888887555 333 3  469999987532   1  233445567889999999998888776 44  7888


Q ss_pred             EEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEE
Q 020021          233 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV  309 (332)
Q Consensus       233 ~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  309 (332)
                      ||+.+++... +.   .+...+..++|||||++|+.++.+   ..|++||+.+++. ..+..+. .+..++|+||+++|+
T Consensus       296 ~d~~~~~~~~-l~---~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~  369 (415)
T 2hqs_A          296 VNINGGAPQR-IT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVI  369 (415)
T ss_dssp             EETTSSCCEE-CC---CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEE
T ss_pred             EECCCCCEEE-Ee---cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEE
Confidence            8988776432 22   233566789999999999998765   5899999988775 4455554 789999999999888


Q ss_pred             eccce-----EEEecccccccccccc
Q 020021          310 TGSSE-----LSFWIPDLSKLGAYVG  330 (332)
Q Consensus       310 t~~~d-----~~~w~~~~~~~~~~~~  330 (332)
                      +++.+     +.+|+.+...+..+.+
T Consensus       370 ~~s~~~~~~~l~~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          370 YSSSQGMGSVLNLVSTDGRFKARLPA  395 (415)
T ss_dssp             EEEEETTEEEEEEEETTSCCEEECCC
T ss_pred             EEEcCCCccEEEEEECCCCcEEEeeC
Confidence            87754     4555555555555544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=3.9e-27  Score=218.30  Aligned_cols=211  Identities=21%  Similarity=0.278  Sum_probs=172.5

Q ss_pred             ccceeEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCee-------eEEeeecccceeEEEEccC-CCEEEEe
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATC-------LKTINSKKYGVDLVCFTSH-PTTVIYS   94 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~-~~~~~~~   94 (332)
                      .+....+.+|.+.|.+++|+|++. +|++|+.|++|++||+.++..       ...+..|...|..++|+|. +..++++
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence            567788999999999999999998 999999999999999987432       3456678888999999994 5555555


Q ss_pred             cCCCCCceeEEEEccCC---ceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCce-EEEEEEecCceeEEE
Q 020021           95 SKNGWDESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAY  169 (332)
Q Consensus        95 s~~g~d~~v~v~d~~~~---~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~~~~~~~~  169 (332)
                      +.   |+.|++||+.++   +.+..+..|...|++++|+|++. .|++|+.||+|++||++... +...+          
T Consensus       251 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~----------  317 (430)
T 2xyi_A          251 AD---DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF----------  317 (430)
T ss_dssp             ET---TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE----------
T ss_pred             eC---CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe----------
Confidence            43   889999999876   57778889999999999999887 68999999999999997632 11111          


Q ss_pred             cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccC-----------
Q 020021          170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFR-----------  237 (332)
Q Consensus       170 ~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~-----------  237 (332)
                                                       ..+...+.+++|+|+++ ++++++.|+.|++||+..           
T Consensus       318 ---------------------------------~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  364 (430)
T 2xyi_A          318 ---------------------------------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE  364 (430)
T ss_dssp             ---------------------------------ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHH
T ss_pred             ---------------------------------ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccc
Confidence                                             12345688899999995 789999999999999976           


Q ss_pred             ---CeEeEEeeecCCCCCcceEEEECCCCC-EEEEEcCCCcEEEEECCCC
Q 020021          238 ---GTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       238 ---~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sgs~Dg~i~vWd~~~~  283 (332)
                         .+++..+   ..|...+..++|+|+++ +|++++.||.|+||++.+.
T Consensus       365 ~~~~~~~~~~---~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          365 DGPPELLFIH---GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HCCTTEEEEC---CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cCCcceEEEc---CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence               2333333   35667899999999999 9999999999999999653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.9e-27  Score=213.73  Aligned_cols=224  Identities=14%  Similarity=0.115  Sum_probs=165.4

Q ss_pred             ccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC---------CceE
Q 020021           85 TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR---------AEKC  155 (332)
Q Consensus        85 ~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~---------~~~~  155 (332)
                      ..++..+++++   .|++|++||+++++.+..+.  ...|.++.++|+   ++|++.|++|++|+..         +++.
T Consensus        45 ~~d~~~l~sg~---~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           45 YYDKWVCMCRC---EDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             SEEEEEEEEEE---ETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             cCCCCEEEEEC---CCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            34555666665   48999999999999888776  567888888887   9999999999999765         3333


Q ss_pred             EEEEEec---CceeEEEcC--CCeEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCe
Q 020021          156 QGLLRVQ---GRPAAAYDD--QGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH  229 (332)
Q Consensus       156 ~~~~~~~---~~~~~~~~~--~~~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~  229 (332)
                      ...+...   ......+++  ++.+++ ++.|+.|++||++..+.  . ......+...+.+++|+|||.++++++.||.
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~-~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~  193 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--Y-IVHSAKSDVEYSSGVLHKDSLLLALYSPDGI  193 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--E-EEECCCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--E-EEEecCCCCceEEEEECCCCCEEEEEcCCCE
Confidence            3333221   133456666  665554 66789999999986432  1 1122234456899999999999999999999


Q ss_pred             EEEEEccCCeEe-EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecC---CCCCCc--eEEeCC
Q 020021          230 IHVLDSFRGTLL-STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS---FDTEPP--VIKWTP  303 (332)
Q Consensus       230 i~i~d~~~~~~~-~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~---~~~~v~--~l~~sp  303 (332)
                      |++||+++++.+ ..+..  .|...+.+++|+|+|++|++++ |++|++||+.+++.+..+..   |...+.  +++|+|
T Consensus       194 i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (343)
T 3lrv_A          194 LDVYNLSSPDQASSRFPV--DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD  270 (343)
T ss_dssp             EEEEESSCTTSCCEECCC--CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT
T ss_pred             EEEEECCCCCCCccEEec--cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC
Confidence            999999998876 55542  2678899999999999999999 55999999999877655543   333444  599999


Q ss_pred             CeeEEEec---cceEEEecccc
Q 020021          304 GSLMFVTG---SSELSFWIPDL  322 (332)
Q Consensus       304 ~~~~l~t~---~~d~~~w~~~~  322 (332)
                      ++++|+++   +..+++|+++.
T Consensus       271 ~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          271 SGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECT
T ss_pred             CCCEEEEecCCCCcEEEEEEcc
Confidence            99999994   44599997743

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=4e-25  Score=210.58  Aligned_cols=274  Identities=14%  Similarity=0.145  Sum_probs=210.4

Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc--cCCceEEEeec
Q 020021           42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL--HDNKYLRYFKG  119 (332)
Q Consensus        42 ~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~--~~~~~~~~~~~  119 (332)
                      |+|++.++++++.|++|.+||..+++++.++..+.. +..++|+|+++.+++++.   |++|++||+  .+++.+..+..
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~---d~~V~v~D~~~~t~~~~~~i~~  220 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGR---DARIDMIDLWAKEPTKVAEIKI  220 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEET---TSEEEEEETTSSSCEEEEEEEC
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECC---CCeEEEEECcCCCCcEEEEEec
Confidence            789999999999999999999999999999984433 788999999999988864   689999999  88888888874


Q ss_pred             ccccEEEEEecC----CCCeEEEee-CCCcEEEEeCCCceEEEEEEecC-------------ceeEEEcCCC-eEEE-EE
Q 020021          120 HHDRVVSLSLCS----SKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQG-------------RPAAAYDDQG-LVFA-VA  179 (332)
Q Consensus       120 h~~~V~~v~~~~----~~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~~-~~  179 (332)
                       ...+..++|+|    +|+++++++ .|++|.+||..+.++...+....             .....+++++ .++. ..
T Consensus       221 -g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          221 -GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             -CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             -CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence             45679999999    999999887 58999999999998887775421             1234555544 3333 33


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEE-EcCCCeEEEEEccCCeEeEEeeecCC-CCCcceEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTLLSTYNVKPV-SRNSTLEA  257 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~v  257 (332)
                      .++.|.+||.............   .......++|+|||+++++ +..+++|.+||..+++++..+..... |......+
T Consensus       300 ~~g~i~vvd~~~~~~l~~~~i~---~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~  376 (543)
T 1nir_A          300 ETGKVLLVNYKDIDNLTVTSIG---AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF  376 (543)
T ss_dssp             TTTEEEEEECTTSSSCEEEEEE---CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred             CCCeEEEEEecCCCcceeEEec---cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence            4689999998764322211222   1234677899999997655 55689999999999999887764211 22222222


Q ss_pred             EECCC-CCEEEEEc-CCCcEEEEECCC-------CceEEEecCCCCCCceEEeCCCeeEEEecc---------ceEEEec
Q 020021          258 SFSPE-GMFVISGS-GDGSVYAWSVRS-------GKEVASWMSFDTEPPVIKWTPGSLMFVTGS---------SELSFWI  319 (332)
Q Consensus       258 ~~spd-g~~l~sgs-~Dg~i~vWd~~~-------~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~---------~d~~~w~  319 (332)
                       ++|+ ++.++|++ .|++|.+||+.+       .+.+.++..|...+..++|||++++|.+++         ..+.+|+
T Consensus       377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  455 (543)
T ss_dssp             -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred             -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence             5787 67777775 689999999988       788999999988889999999999998875         2499998


Q ss_pred             ccccc
Q 020021          320 PDLSK  324 (332)
Q Consensus       320 ~~~~~  324 (332)
                      .+..+
T Consensus       456 ~~~~~  460 (543)
T 1nir_A          456 LKNLD  460 (543)
T ss_dssp             TTCTT
T ss_pred             CCCCC
Confidence            86444

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=3.5e-26  Score=211.05  Aligned_cols=282  Identities=12%  Similarity=0.121  Sum_probs=211.6

Q ss_pred             cceeEecHH--HHhcccceeEeccCCCcEEEEEECC--------------CCCEEEEEeCC------CcEEEEEcCCCee
Q 020021           11 KVSLELSEE--ILQSMEVGMSFRDYNGRISSMDFHK--------------SSSYLVTASDD------ESIRLYDVTAATC   68 (332)
Q Consensus        11 ~~~~~~~~~--~~~~~~~~~~l~~h~~~I~~i~~s~--------------dg~~l~tgs~D------~tv~iwd~~~~~~   68 (332)
                      .+.+.||+.  .-+.....++|.+|...+..+++++              .+..++.++.+      ++|++||+. +..
T Consensus        92 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~  170 (415)
T 2hqs_A           92 NVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYN  170 (415)
T ss_dssp             EEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCS
T ss_pred             EEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCC
Confidence            467888886  4444334477999999888887764              25677776665      799999997 455


Q ss_pred             eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEE-EeeCCCc--E
Q 020021           69 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRT--V  145 (332)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~-s~s~Dg~--i  145 (332)
                      .+.+..|...+..++|+|+++.+++++..+-+..|++||+.+++.. .+.+|...+.+++|+|||+.|+ +++.|+.  |
T Consensus       171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i  249 (415)
T 2hqs_A          171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  249 (415)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence            6778888888999999999999998875433469999999998765 5778889999999999999887 7777765  9


Q ss_pred             EEEeCCCceEEEEEEec-CceeEEEcCCCeEEEEEe--CC--EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE
Q 020021          146 LLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAF--GG--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL  220 (332)
Q Consensus       146 ~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  220 (332)
                      .+||++++++....... ......+++++..++.+.  ++  .|.+||+...+.   .  .+..+...+..++|||||++
T Consensus       250 ~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~---~--~l~~~~~~~~~~~~spdG~~  324 (415)
T 2hqs_A          250 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP---Q--RITWEGSQNQDADVSSDGKF  324 (415)
T ss_dssp             EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---E--ECCCSSSEEEEEEECTTSSE
T ss_pred             EEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE---E--EEecCCCcccCeEECCCCCE
Confidence            99999887764322222 223567788887555443  34  677888765321   1  12223345678999999999


Q ss_pred             EEEEcCC---CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC---cEEEEECCCCceEEEecCCCC
Q 020021          221 MLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEVASWMSFDT  294 (332)
Q Consensus       221 l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg---~i~vWd~~~~~~~~~~~~~~~  294 (332)
                      +++++.+   ..|++||+.+++... +.   .+ ..+..++|+|||++|++++.|+   .|++||+. ++....+..|++
T Consensus       325 l~~~~~~~g~~~i~~~d~~~~~~~~-l~---~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~  398 (415)
T 2hqs_A          325 MVMVSSNGGQQHIAKQDLATGGVQV-LS---ST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG  398 (415)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEE-CC---CS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSS
T ss_pred             EEEEECcCCceEEEEEECCCCCEEE-ec---CC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCC
Confidence            9888764   589999999887642 22   12 2677899999999999998887   79999986 556778889999


Q ss_pred             CCceEEeCCCe
Q 020021          295 EPPVIKWTPGS  305 (332)
Q Consensus       295 ~v~~l~~sp~~  305 (332)
                      .|..++|+|-.
T Consensus       399 ~v~~~~~~~~~  409 (415)
T 2hqs_A          399 QVKFPAWSPYL  409 (415)
T ss_dssp             EEEEEEECCCC
T ss_pred             CCcCCcccccc
Confidence            99999999964

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=4e-25  Score=210.62  Aligned_cols=293  Identities=12%  Similarity=0.082  Sum_probs=215.9

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEc--CCCeeeEEeeecccceeEEEEcc----CCCEEEEecC
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV--TAATCLKTINSKKYGVDLVCFTS----HPTTVIYSSK   96 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~s~   96 (332)
                      ..++..++..+.. +.++.|+|||++|++++.|++|++||+  .+++++.++..+ ..+..++|+|    +++.+++++.
T Consensus       168 t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-~~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          168 SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-IEARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-CCcceEEeCCCcCCCCCEEEEEEc
Confidence            4566777773333 889999999999999999999999999  889998888754 3567899999    9998887752


Q ss_pred             CCCCceeEEEEccCCceEEEeec----------ccc-cEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEE--EEEec
Q 020021           97 NGWDESLRLLSLHDNKYLRYFKG----------HHD-RVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG--LLRVQ  162 (332)
Q Consensus        97 ~g~d~~v~v~d~~~~~~~~~~~~----------h~~-~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~--~~~~~  162 (332)
                        ++++|.+||..++++++.+..          |.. .+.++.+++++. ++++...+++|.+||..+.+...  .+...
T Consensus       246 --~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~  323 (543)
T 1nir_A          246 --WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA  323 (543)
T ss_dssp             --ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC
T ss_pred             --cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC
Confidence              478999999999999888765          333 789999999765 56778889999999998765433  22211


Q ss_pred             -CceeEEEcCCCeEEEEE--eCCEEEEEECccCCCCCeeEEEecC--CCCCceeEEEcCC-CCEEEEEc-CCCeEEEEEc
Q 020021          163 -GRPAAAYDDQGLVFAVA--FGGYIRMFDARKYEKGPFDIFSVGG--DISDANVVKFSND-GRLMLLTT-MEGHIHVLDS  235 (332)
Q Consensus       163 -~~~~~~~~~~~~~~~~~--~~~~i~vwd~~~~~~~~~~~~~~~~--~~~~v~~v~~s~d-g~~l~~~~-~dg~i~i~d~  235 (332)
                       ......+++++.++.++  .+++|++||..+.+.  ...+....  |......+ ++|+ |.+++++. .|++|.+||.
T Consensus       324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l--~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL--SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             cCccCceECCCCCEEEEEecCCCeEEEEECCCCeE--EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence             22346778888755444  368999999876431  12222211  22222222 4677 67777775 6899999999


Q ss_pred             cC-------CeEeEEeeecCCCCCcceEEEECCCCCEEEEEc-------CCCcEEEEECCCCceE-EEe--------cCC
Q 020021          236 FR-------GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-------GDGSVYAWSVRSGKEV-ASW--------MSF  292 (332)
Q Consensus       236 ~~-------~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs-------~Dg~i~vWd~~~~~~~-~~~--------~~~  292 (332)
                      .+       +++++++..   +......++|+|||++|++++       .+++|.|||+.+++.+ ..+        ..+
T Consensus       401 ~~~~~~~~~~~~v~~l~~---~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~  477 (543)
T 1nir_A          401 DPKNHPQYAWKKVAELQG---QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG  477 (543)
T ss_dssp             CTTTCTTTBTSEEEEEEC---SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred             CCCCCchhcCeEEEEEEc---CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence            88       788888774   334556799999999999987       2779999999998876 443        345


Q ss_pred             CCCCceEEeCCCeeEEEec-------cceEEEeccccccc
Q 020021          293 DTEPPVIKWTPGSLMFVTG-------SSELSFWIPDLSKL  325 (332)
Q Consensus       293 ~~~v~~l~~sp~~~~l~t~-------~~d~~~w~~~~~~~  325 (332)
                      ...+..+.|+|+|+.+..+       .+.+.+|+....++
T Consensus       478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~  517 (543)
T 1nir_A          478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  517 (543)
T ss_dssp             CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence            6778999999999877643       13488888765444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=1.1e-24  Score=193.81  Aligned_cols=280  Identities=13%  Similarity=0.107  Sum_probs=200.2

Q ss_pred             EECCCCCE-EEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce-EEEee
Q 020021           41 DFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFK  118 (332)
Q Consensus        41 ~~s~dg~~-l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~-~~~~~  118 (332)
                      .|++++++ +++.+.|++|++||+.+++.+..+..+...+ .++|+++++.+++++.  .++.|.+||+++++. ...+.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~--~~~~i~~~d~~~~~~~~~~~~   80 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSD--FCQTLVQIETQLEPPKVVAIQ   80 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEES--TTCEEEEEECSSSSCEEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeC--CCCeEEEEECCCCceeEEecc
Confidence            46666555 7889999999999999999988877655556 8999999997777653  267999999999887 77777


Q ss_pred             cccccEEEEEecCCCCeEEEeeCCC---cEEEEeCCCceEEEEEEecCc-eeEEEcCCCe-EEEEEe-CCE-EEEEECcc
Q 020021          119 GHHDRVVSLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGL-VFAVAF-GGY-IRMFDARK  191 (332)
Q Consensus       119 ~h~~~V~~v~~~~~~~~l~s~s~Dg---~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~-~~~-i~vwd~~~  191 (332)
                      .+..+..+++|+|++++++++..++   .|.+||+.+++....+..... ....+++++. ++.+.. ++. |.+|++..
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            7777766699999999998665553   899999999888776655433 3567778775 554444 467 99999864


Q ss_pred             CCCCCee-E-EEecCCCCCceeEEEcCCCCEE-EEEcCCCeEEEEEccCCeE---eEEeeecCCCCCcceEEEECCCCCE
Q 020021          192 YEKGPFD-I-FSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTL---LSTYNVKPVSRNSTLEASFSPEGMF  265 (332)
Q Consensus       192 ~~~~~~~-~-~~~~~~~~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~v~~spdg~~  265 (332)
                      ..  ... . ............++|+|||+++ +++..++.|++||+.+++.   +..+..    ...+..++|+|||++
T Consensus       161 ~g--~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~  234 (331)
T 3u4y_A          161 DG--VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT----NNLPGTIVVSRDGST  234 (331)
T ss_dssp             TC--CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----SSCCCCEEECTTSSE
T ss_pred             CC--cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC----CCCCceEEECCCCCE
Confidence            21  111 0 1111122346889999999855 5556789999999998887   555542    244567899999997


Q ss_pred             EEEEc-CCCcEEEEECCCCce--EEEecCC----CCC---CceEEeCCCeeEEEeccc---eEEEeccccccccccc
Q 020021          266 VISGS-GDGSVYAWSVRSGKE--VASWMSF----DTE---PPVIKWTPGSLMFVTGSS---ELSFWIPDLSKLGAYV  329 (332)
Q Consensus       266 l~sgs-~Dg~i~vWd~~~~~~--~~~~~~~----~~~---v~~l~~sp~~~~l~t~~~---d~~~w~~~~~~~~~~~  329 (332)
                      |+.++ .++.|.+||+.+++.  +..+..+    ...   ...++|+||+++|..++.   .+.+|+.+...++.+.
T Consensus       235 l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~  311 (331)
T 3u4y_A          235 VYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVA  311 (331)
T ss_dssp             EEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECT
T ss_pred             EEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccccee
Confidence            76654 578999999998876  3333222    222   245899999987654432   3899998876666543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=8.9e-25  Score=215.43  Aligned_cols=279  Identities=10%  Similarity=0.048  Sum_probs=206.2

Q ss_pred             CCcEEEEEECCCCCEEEEEeC-CC-----cEEEEEcCCCeeeEEeeeccc------------------------ceeEEE
Q 020021           34 NGRISSMDFHKSSSYLVTASD-DE-----SIRLYDVTAATCLKTINSKKY------------------------GVDLVC   83 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~-D~-----tv~iwd~~~~~~~~~~~~~~~------------------------~v~~~~   83 (332)
                      ...|.+++|||||++|++++. |+     +|++||+.+++....+..+..                        .+..++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456999999999999999998 88     999999999988776655432                        277899


Q ss_pred             EccCCCEEEEecCCCCCceeEEEEccCCc--eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe
Q 020021           84 FTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV  161 (332)
Q Consensus        84 ~~~~~~~~~~~s~~g~d~~v~v~d~~~~~--~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~  161 (332)
                      |+|+++.+++++.    +.|.+||+.+++  ....+..|...+..++|+|||++|++++. +.|.+||+.+++.......
T Consensus       116 ~SpDg~~l~~~~~----~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~  190 (741)
T 2ecf_A          116 WSPDAQRLLFPLG----GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTAD  190 (741)
T ss_dssp             ECTTSSEEEEEET----TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCC
T ss_pred             ECCCCCEEEEEeC----CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccC
Confidence            9999999998863    789999998873  34567788889999999999999999874 6999999988776543322


Q ss_pred             cC------------------ceeEEEcCCCeEE-EEEeCC---------------------------------EEEEEEC
Q 020021          162 QG------------------RPAAAYDDQGLVF-AVAFGG---------------------------------YIRMFDA  189 (332)
Q Consensus       162 ~~------------------~~~~~~~~~~~~~-~~~~~~---------------------------------~i~vwd~  189 (332)
                      ..                  .....+++++..+ .+..++                                 .|.+||+
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            21                  1346778877644 444443                                 7888887


Q ss_pred             cc-CCCCCeeEEEec-CCCCCceeEEEcCCCCEEEEEcC-----CCeEEEEEccCCeEeEEeeecCC-CCCcceEEEECC
Q 020021          190 RK-YEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTM-----EGHIHVLDSFRGTLLSTYNVKPV-SRNSTLEASFSP  261 (332)
Q Consensus       190 ~~-~~~~~~~~~~~~-~~~~~v~~v~~s~dg~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~v~~sp  261 (332)
                      .. .+.   ...... .+...+..++| |||+.+++...     +..|++||+.+++....+..... ....+..++|+|
T Consensus       271 ~~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          271 AEQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             STTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred             CCCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence            65 321   111111 23346788999 99999987654     56899999999887665543211 011334689999


Q ss_pred             CCCEEEEEcCCCcEEEEECC-CCceEEEecCCCCCCceE-EeCCCeeEEE-eccc----eEEEecccc
Q 020021          262 EGMFVISGSGDGSVYAWSVR-SGKEVASWMSFDTEPPVI-KWTPGSLMFV-TGSS----ELSFWIPDL  322 (332)
Q Consensus       262 dg~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~~~~~v~~l-~~sp~~~~l~-t~~~----d~~~w~~~~  322 (332)
                      ||+++++++.||.++||.+. +++ +..+..+...+..+ .|+||++.++ +++.    .+++|..+.
T Consensus       347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            99999999999988888775 445 77777777777776 5999997664 4433    478998754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=6.5e-23  Score=183.62  Aligned_cols=268  Identities=12%  Similarity=0.121  Sum_probs=199.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEeC-------CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           33 YNGRISSMDFHKSSSYLVTASD-------DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~-------D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      ....+..++|+|++++++.++.       +++|.+||..+++.+..+.... .+..++++++++.++.+..  .++.|.+
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~--~~~~v~~  115 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-KPFGATINNTTQTLWFGNT--VNSAVTA  115 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-CCCSEEEETTTTEEEEEET--TTTEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-CcceEEECCCCCEEEEEec--CCCEEEE
Confidence            3456789999999998887774       5689999999999888876543 3667899999997776653  3679999


Q ss_pred             EEccCCceEEEeeccccc---------EEEEEecCCCCeEEEee--CCCcEEEEeCCCceEEEEEEecC--ceeEEEcCC
Q 020021          106 LSLHDNKYLRYFKGHHDR---------VVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQ  172 (332)
Q Consensus       106 ~d~~~~~~~~~~~~h~~~---------V~~v~~~~~~~~l~s~s--~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~  172 (332)
                      ||.++++.+..+..+...         +.++.|+|++++++.++  .++.|.+||.++++....+....  .....++++
T Consensus       116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d  195 (353)
T 3vgz_A          116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSE  195 (353)
T ss_dssp             EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETT
T ss_pred             EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCC
Confidence            999999988877765432         78899999999777665  48899999999988877665222  234566776


Q ss_pred             Ce-EEEEEeCCEEEEEECccCCCCCeeEEEec--CCCCCceeEEEcCCCCEEEEEc-CCCeEEEEEccCCeEeEEeeecC
Q 020021          173 GL-VFAVAFGGYIRMFDARKYEKGPFDIFSVG--GDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKP  248 (332)
Q Consensus       173 ~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~  248 (332)
                      +. ++.+..++.|.+||....+.  .......  ++...+..++|+|||+.+++++ .++.|.+||..+++.+..+....
T Consensus       196 g~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          196 GKRLYTTNADGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             TTEEEEECTTSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             CCEEEEEcCCCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            65 44444578999999875421  1222221  1233456799999999766554 55999999999998887766321


Q ss_pred             CCCCcceEEEECCCCCEEEEE-cCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEec
Q 020021          249 VSRNSTLEASFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG  311 (332)
Q Consensus       249 ~~~~~~~~v~~spdg~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~  311 (332)
                           ...++|+|||++++.+ ..++.|.+||+.+++.+..+... ..+..++|+||++++..+
T Consensus       274 -----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~  331 (353)
T 3vgz_A          274 -----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVS  331 (353)
T ss_dssp             -----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEE
T ss_pred             -----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEE
Confidence                 2468999999966555 47999999999999887776543 367899999999854443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=1e-23  Score=183.26  Aligned_cols=254  Identities=11%  Similarity=0.049  Sum_probs=184.2

Q ss_pred             EEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC-CceEEEeeccc-ccEEEE
Q 020021           50 VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYLRYFKGHH-DRVVSL  127 (332)
Q Consensus        50 ~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~-~~~~~~~~~h~-~~V~~v  127 (332)
                      .+++.|++|++||+.+++... +..|...+..++|+|+++.+++++    ++.|.+||+.+ ++......+|. ..|.++
T Consensus        16 ~~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~   90 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS----EGLLYRLSLAGDPSPEKVDTGFATICNNDH   90 (297)
T ss_dssp             --CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE----TTEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred             CCCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc----CCeEEEEeCCCCCCceEeccccccccccce
Confidence            356789999999999888764 455677899999999999988875    57899999999 88777776764 778999


Q ss_pred             EecCCCCeEEEee--CCCcEEEEeC--CCceEEEEEEecCceeEEEcCCCeEE--EEEeCCEEEEEECccCCCCCeeEEE
Q 020021          128 SLCSSKDCFISGS--LDRTVLLWDQ--RAEKCQGLLRVQGRPAAAYDDQGLVF--AVAFGGYIRMFDARKYEKGPFDIFS  201 (332)
Q Consensus       128 ~~~~~~~~l~s~s--~Dg~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~vwd~~~~~~~~~~~~~  201 (332)
                      +|+|++++|++++  .++..++|.+  .++...............+++++..+  +...++.+++|++..... .  ...
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-~--~~~  167 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-V--ETR  167 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-C--EEE
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC-c--ceE
Confidence            9999999999998  4456666654  44432221111223345677777544  345689999998653221 1  123


Q ss_pred             ecCCCCCceeEEEcCCCCEEEEEc-CCCeEEEEEcc-CCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-------
Q 020021          202 VGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-------  272 (332)
Q Consensus       202 ~~~~~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-------  272 (332)
                      +..+...+..++|+|+|+.++.++ .++.+++|++. .+..+..+.   .+...+..++|+|||++|+.++.+       
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT---DSAYGDWFPHPSPSGDKVVFVSYDADVFDHP  244 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC---CCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe---cCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence            334445678999999999887765 58899999875 344443333   233456778999999999999876       


Q ss_pred             ----CcEEEEECCCCce--EEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021          273 ----GSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       273 ----g~i~vWd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                          +.|++||+.+++.  +..+..|...+..++|+|+++.|++++.+
T Consensus       245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             ccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence                5699999988765  34444778889999999999988887654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=8.8e-23  Score=208.76  Aligned_cols=293  Identities=13%  Similarity=0.133  Sum_probs=203.6

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCC------CcEEEEEcCCCeeeEEeeecccce-------eEEEEccCCCEEEE
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDD------ESIRLYDVTAATCLKTINSKKYGV-------DLVCFTSHPTTVIY   93 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D------~tv~iwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~   93 (332)
                      .+.|.+|.+.|.+++|||||++||.++.+      ..|.+||+.+++ ...+..|...+       ..++|+|+++ +++
T Consensus        45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~  122 (1045)
T 1k32_A           45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGN-LII  122 (1045)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCC-EEE
T ss_pred             EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCE-EEE
Confidence            46688999999999999999999988754      489999999887 46677777666       8899999998 444


Q ss_pred             ecCCC----CCceeEEEEccCCceE-------------------------------------------------EEeecc
Q 020021           94 SSKNG----WDESLRLLSLHDNKYL-------------------------------------------------RYFKGH  120 (332)
Q Consensus        94 ~s~~g----~d~~v~v~d~~~~~~~-------------------------------------------------~~~~~h  120 (332)
                      .+...    ....+.+||+.+++..                                                 ..+.+|
T Consensus       123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~  202 (1045)
T 1k32_A          123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM  202 (1045)
T ss_dssp             EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred             EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence            43221    1235777777655422                                                 223467


Q ss_pred             cccEEEEEecCCCCeEEEeeCCCcEEEEeCCC-ceEEEEEE-ecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCee
Q 020021          121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLLR-VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD  198 (332)
Q Consensus       121 ~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~  198 (332)
                      ...+.++.|+++ ..+++++.|+++++|++.. +.....+. ........+++++..++.+.++.|.+||+..   ..+.
T Consensus       203 ~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~---~~l~  278 (1045)
T 1k32_A          203 STHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDT---EKIE  278 (1045)
T ss_dssp             SSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTT---CCEE
T ss_pred             CCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCc---eEee
Confidence            777888889887 6677888899999998643 21122221 1223345667777766666899999999832   1221


Q ss_pred             EEEecC-----------CCCCceeEEEc-CCCCEEEEEcCCCeEEEEEccCCeEeE------------------------
Q 020021          199 IFSVGG-----------DISDANVVKFS-NDGRLMLLTTMEGHIHVLDSFRGTLLS------------------------  242 (332)
Q Consensus       199 ~~~~~~-----------~~~~v~~v~~s-~dg~~l~~~~~dg~i~i~d~~~~~~~~------------------------  242 (332)
                        .+.+           +...+..++|| |||+.+++++ ++.|++|+...++...                        
T Consensus       279 --~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s  355 (1045)
T 1k32_A          279 --KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGT  355 (1045)
T ss_dssp             --ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEE
T ss_pred             --eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEE
Confidence              2222           11257889999 9998887776 6677777765443210                        


Q ss_pred             -------Eeee-------cCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEE
Q 020021          243 -------TYNV-------KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF  308 (332)
Q Consensus       243 -------~~~~-------~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  308 (332)
                             .+..       ...+...+..++|||||++|++++.|+.|++||+.+++.......|...+..++|||||++|
T Consensus       356 ~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~l  435 (1045)
T 1k32_A          356 REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI  435 (1045)
T ss_dssp             TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred             CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeE
Confidence                   0000       00223456688999999999999999999999999988776666888889999999999988


Q ss_pred             Eeccc------------eEEEecccccccccc
Q 020021          309 VTGSS------------ELSFWIPDLSKLGAY  328 (332)
Q Consensus       309 ~t~~~------------d~~~w~~~~~~~~~~  328 (332)
                      ++++.            .+.+|+.+..++..+
T Consensus       436 a~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l  467 (1045)
T 1k32_A          436 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA  467 (1045)
T ss_dssp             EEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred             EEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence            87654            477777665444443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=3e-22  Score=178.25  Aligned_cols=269  Identities=9%  Similarity=0.090  Sum_probs=176.9

Q ss_pred             CEEEEEeCCCcEEEEEcC-CCe--eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc--CCc--eEEEeec
Q 020021           47 SYLVTASDDESIRLYDVT-AAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH--DNK--YLRYFKG  119 (332)
Q Consensus        47 ~~l~tgs~D~tv~iwd~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~--~~~--~~~~~~~  119 (332)
                      .++++++.|++|++||+. +++  .+..+ .+...+..++|+|+++.+++++..  ++.+++|++.  +++  .+..+..
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~   82 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAESAL   82 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecC--CCeEEEEEecCCCCceeecccccc
Confidence            345555889999999995 342  23333 344567889999999988887642  3799999997  554  3344444


Q ss_pred             ccccEEEEEecCCCCeEEEee-CCCcEEEEeCC---CceEEEEEEecC-ceeEEEcCCCe-EEEEE-eCCEEEEEECcc-
Q 020021          120 HHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQR---AEKCQGLLRVQG-RPAAAYDDQGL-VFAVA-FGGYIRMFDARK-  191 (332)
Q Consensus       120 h~~~V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~---~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~-~~~~i~vwd~~~-  191 (332)
                      +. .+..++|+|++++|+.++ .++.|.+||+.   .......+.... .....+++++. ++.+. .++.|++||+.. 
T Consensus        83 ~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  161 (343)
T 1ri6_A           83 PG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  161 (343)
T ss_dssp             SS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence            44 788999999999776665 48899999984   333333332222 23456777775 44444 579999999875 


Q ss_pred             CCCCCee--EEEecCCCCCceeEEEcCCCCEEEE-EcCCCeEEEEEccC--CeE--eEEeeecCC---CCCcceEEEECC
Q 020021          192 YEKGPFD--IFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFR--GTL--LSTYNVKPV---SRNSTLEASFSP  261 (332)
Q Consensus       192 ~~~~~~~--~~~~~~~~~~v~~v~~s~dg~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~~---~~~~~~~v~~sp  261 (332)
                      .......  .... .....+..++|+|+|+++++ +..++.|++||+..  ++.  .......+.   ....+..++|+|
T Consensus       162 ~~~~~~~~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~  240 (343)
T 1ri6_A          162 GHLVAQDPAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  240 (343)
T ss_dssp             SCEEEEEEEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             Cceeeeccccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence            2111111  1111 11235678999999996654 55889999999843  433  222221111   123445789999


Q ss_pred             CCCEEE-EEcCCCcEEEEECC--C--CceEEEecCCCCCCceEEeCCCeeEEEecc-c--eEEEeccc
Q 020021          262 EGMFVI-SGSGDGSVYAWSVR--S--GKEVASWMSFDTEPPVIKWTPGSLMFVTGS-S--ELSFWIPD  321 (332)
Q Consensus       262 dg~~l~-sgs~Dg~i~vWd~~--~--~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~-~--d~~~w~~~  321 (332)
                      ||++|+ ++..|+.|++||+.  +  .+.+..+..+.. +..++|+|++++|++++ .  .+.+|..+
T Consensus       241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            998887 55689999999997  2  234444544444 88999999998766655 2  38899655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=2.4e-23  Score=205.16  Aligned_cols=274  Identities=9%  Similarity=0.079  Sum_probs=191.7

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      .|.+++|||||++|++++. ++|++||+.++.  ....+..+...+..++|+|+++.+++++    ++.|.+||+.+++.
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~----~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR----GRNLWVIDLASGRQ  184 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE----TTEEEEEETTTTEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe----CCcEEEEecCCCCE
Confidence            3889999999999999887 999999999883  4445666667788999999999998876    45899999999877


Q ss_pred             EEEeeccccc----------------EEEEEecCCCCeEEEeeCCC---------------------------------c
Q 020021          114 LRYFKGHHDR----------------VVSLSLCSSKDCFISGSLDR---------------------------------T  144 (332)
Q Consensus       114 ~~~~~~h~~~----------------V~~v~~~~~~~~l~s~s~Dg---------------------------------~  144 (332)
                      ......+...                +..+.|+|||++|++++.|+                                 .
T Consensus       185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            6655555443                37799999999999998876                                 7


Q ss_pred             EEEEeCCC-ceEEEEEEe--c--CceeEEEcCCCeEEEE-Ee-----CCEEEEEECccCCCCCeeEEEecCC--CCCcee
Q 020021          145 VLLWDQRA-EKCQGLLRV--Q--GRPAAAYDDQGLVFAV-AF-----GGYIRMFDARKYEKGPFDIFSVGGD--ISDANV  211 (332)
Q Consensus       145 i~iWd~~~-~~~~~~~~~--~--~~~~~~~~~~~~~~~~-~~-----~~~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~  211 (332)
                      |.+||+.+ ++.......  .  ......+ +++..++. ..     +..|.+||+...+.  .........  ...+..
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~  341 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVLAHETSPTWVPLHNS  341 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEEEEEECSSCCCCCSC
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEEEEcCCCCcCCcCCc
Confidence            89999988 765433211  1  1234566 76654443 32     35799999875432  112221110  013457


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEEcc-CCeEeEEeeecCCCCCcceEE-EECCCCCEEE-EEcCCC--cEEEEECCC-Cce
Q 020021          212 VKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEA-SFSPEGMFVI-SGSGDG--SVYAWSVRS-GKE  285 (332)
Q Consensus       212 v~~s~dg~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~v-~~spdg~~l~-sgs~Dg--~i~vWd~~~-~~~  285 (332)
                      ++|||||+++++++.+|.+++|... .+. ...+.   .+...+..+ +|+|||+.|+ +++.|+  .++||++.. ++.
T Consensus       342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~---~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~  417 (741)
T 2ecf_A          342 LRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT---HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ  417 (741)
T ss_dssp             CEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC---CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC
T ss_pred             eEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee---ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC
Confidence            8999999998899999977777654 344 44333   233455566 5999998775 555565  899999864 554


Q ss_pred             EEEecCCCCCCceEEeCCCeeEEEeccc------eEEEecccc
Q 020021          286 VASWMSFDTEPPVIKWTPGSLMFVTGSS------ELSFWIPDL  322 (332)
Q Consensus       286 ~~~~~~~~~~v~~l~~sp~~~~l~t~~~------d~~~w~~~~  322 (332)
                      +..+.. ...+..++|+||+++++....      ++.+++.+.
T Consensus       418 ~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          418 PQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             CEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred             eeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence            555554 556789999999988776543      255555443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=2e-22  Score=178.94  Aligned_cols=263  Identities=10%  Similarity=0.042  Sum_probs=191.3

Q ss_pred             CEEEEEeCCCcEEEEEcCCCeeeEEeeeccc--ceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeec-c---
Q 020021           47 SYLVTASDDESIRLYDVTAATCLKTINSKKY--GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG-H---  120 (332)
Q Consensus        47 ~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~-h---  120 (332)
                      +++++++.|++|++||+.+++.+..+.....  .+..++|+|+++.++++..  .++.|.+||+.+++.+..+.. +   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN--KSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET--TTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC--CCCeEEEEECCCCCeEeeEEcCCccc
Confidence            4789999999999999999999888764432  3678899999988766643  367899999999988776653 2   


Q ss_pred             -cccEEEEEecCCCCeEEEee------------CCCcEEEEeCCCceEEEEEEecC-ceeEEEcCCCeEEEEEeCCEEEE
Q 020021          121 -HDRVVSLSLCSSKDCFISGS------------LDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAFGGYIRM  186 (332)
Q Consensus       121 -~~~V~~v~~~~~~~~l~s~s------------~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v  186 (332)
                       ...+..++|+|++++++.++            .|+.|.+||+.+++....+.... .....+++++..+.++ ++.|.+
T Consensus        80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~  158 (337)
T 1pby_B           80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHV  158 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEE
T ss_pred             ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEE
Confidence             23567899999999888886            57999999999888776665432 2345677777655444 789999


Q ss_pred             EECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC-C-----------------------eEEEEEccCCeEeE
Q 020021          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G-----------------------HIHVLDSFRGTLLS  242 (332)
Q Consensus       187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-g-----------------------~i~i~d~~~~~~~~  242 (332)
                      ||+...+.  ...+.....   ...+.++|||+.++..+.. +                       .|.+||+.+++.. 
T Consensus       159 ~d~~~~~~--~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  232 (337)
T 1pby_B          159 MDPEAGTL--VEDKPIQSW---EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-  232 (337)
T ss_dssp             EETTTTEE--EEEECSTTT---TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-
T ss_pred             EECCCCcE--eeeeecccc---CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-
Confidence            99875321  111221111   1223789999866554432 2                       4689999988775 


Q ss_pred             EeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          243 TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       243 ~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      ...... +...+..++|+|||++++++  ++.|++||+.+++.+..+.. ...+.+++|+||++++++++.+  +.+|+.
T Consensus       233 ~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          233 MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            333222 23455679999999999988  79999999999887776654 3467899999999877766554  888877


Q ss_pred             cc
Q 020021          321 DL  322 (332)
Q Consensus       321 ~~  322 (332)
                      ..
T Consensus       309 ~~  310 (337)
T 1pby_B          309 ET  310 (337)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=8.3e-22  Score=175.43  Aligned_cols=266  Identities=10%  Similarity=0.120  Sum_probs=181.1

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCC-CcEEEEEcC--CCee--eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDD-ESIRLYDVT--AATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D-~tv~iwd~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      ..|...+.+++|+|+|++|++++.+ ++|++|++.  +++.  +..+..+. .+..++|+++++.+++++.  .++.|.+
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~--~~~~i~~  110 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSY--NAGNVSV  110 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEET--TTTEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEec--CCCeEEE
Confidence            3577789999999999999888887 999999997  5543  34444433 6788999999998877653  2678999


Q ss_pred             EEcc---CCceEEEeecccccEEEEEecCCCCeEEEee-CCCcEEEEeCCC-ceEEEE----EEec---CceeEEEcCCC
Q 020021          106 LSLH---DNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRA-EKCQGL----LRVQ---GRPAAAYDDQG  173 (332)
Q Consensus       106 ~d~~---~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~~-~~~~~~----~~~~---~~~~~~~~~~~  173 (332)
                      ||+.   ..+.+..+..+ ..+.+++|+|+++++++++ .|+.|++||+.+ ++....    +...   ......+++++
T Consensus       111 ~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg  189 (343)
T 1ri6_A          111 TRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  189 (343)
T ss_dssp             EEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             EECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence            9994   33444555444 4588899999999888777 899999999987 544322    2221   12245677877


Q ss_pred             eEE-EEE-eCCEEEEEECccCCCCCee---EEE-ecCC---CCCceeEEEcCCCCEEE-EEcCCCeEEEEEcc--CC--e
Q 020021          174 LVF-AVA-FGGYIRMFDARKYEKGPFD---IFS-VGGD---ISDANVVKFSNDGRLML-LTTMEGHIHVLDSF--RG--T  239 (332)
Q Consensus       174 ~~~-~~~-~~~~i~vwd~~~~~~~~~~---~~~-~~~~---~~~v~~v~~s~dg~~l~-~~~~dg~i~i~d~~--~~--~  239 (332)
                      ..+ .+. .++.|++||+.... +.+.   ... ....   ...+..++|+|||++++ +...++.|++||+.  ++  +
T Consensus       190 ~~l~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~  268 (343)
T 1ri6_A          190 QYAYCVNELNSSVDVWELKDPH-GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS  268 (343)
T ss_dssp             SEEEEEETTTTEEEEEESSCTT-SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred             CEEEEEeCCCCEEEEEEecCCC-CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence            644 444 47899999986422 1221   111 1100   12345799999998776 45589999999997  33  3


Q ss_pred             EeEEeeecCCCCCcceEEEECCCCCEEEEEc-CCCcEEEEEC--CCCce--EEEecCCCCCCceEEeCCCee
Q 020021          240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVYAWSV--RSGKE--VASWMSFDTEPPVIKWTPGSL  306 (332)
Q Consensus       240 ~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs-~Dg~i~vWd~--~~~~~--~~~~~~~~~~v~~l~~sp~~~  306 (332)
                      .+..+.   .+ ..+..++|+|||++|++++ .|+.|.+|++  .+++.  +..+.. ...+.+++|.|+.+
T Consensus       269 ~~~~~~---~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          269 KEGFQP---TE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG  335 (343)
T ss_dssp             EEEEEE---CS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred             Eeeeec---CC-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence            333332   12 2266799999999888887 6899999954  45543  333333 34577888887654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=1.8e-21  Score=174.46  Aligned_cols=271  Identities=12%  Similarity=0.133  Sum_probs=177.3

Q ss_pred             CCCcEEEEEcC--CCeeeE-EeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc--eEEEeecccccEEEEE
Q 020021           54 DDESIRLYDVT--AATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLS  128 (332)
Q Consensus        54 ~D~tv~iwd~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~--~~~~~~~h~~~V~~v~  128 (332)
                      .++.+.+|+++  +++... ....+...+..++|+|+++ +++++..+.++.|.+||+.+++  .+..+..|...+..++
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            45677777664  565433 2233444567799999998 6655432336799999998766  3444556778889999


Q ss_pred             ecCCCCeEEEee-CCCcEEEEeCCC-ceE--EEEEEecC-----------ceeEEEcCCCeEEEEEe-CCEEEEEECccC
Q 020021          129 LCSSKDCFISGS-LDRTVLLWDQRA-EKC--QGLLRVQG-----------RPAAAYDDQGLVFAVAF-GGYIRMFDARKY  192 (332)
Q Consensus       129 ~~~~~~~l~s~s-~Dg~i~iWd~~~-~~~--~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~i~vwd~~~~  192 (332)
                      |+|++++|++++ .++++++||+.. +..  ...+....           .....+++++.++++.. ++.|++|++...
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence            999999888887 789999999853 222  22222111           12367788777555544 679999998721


Q ss_pred             CCCCeeEE-EecC-CCCCceeEEEcCCCCEEEE-EcCCCeEEEEEccC--CeEeEEeeecCCC-----CCcceEEEECCC
Q 020021          193 EKGPFDIF-SVGG-DISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFR--GTLLSTYNVKPVS-----RNSTLEASFSPE  262 (332)
Q Consensus       193 ~~~~~~~~-~~~~-~~~~v~~v~~s~dg~~l~~-~~~dg~i~i~d~~~--~~~~~~~~~~~~~-----~~~~~~v~~spd  262 (332)
                        +.+... .... .......++|+|||+++++ +..++.|.+|++..  ++...........     ...+..++|+||
T Consensus       173 --g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd  250 (347)
T 3hfq_A          173 --GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD  250 (347)
T ss_dssp             --SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred             --CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence              222211 1111 1124577999999995554 67789999999874  5542221111111     134667999999


Q ss_pred             CCEE-EEEcCCCcEEEEECCCC---ceEEEecCCCCCCceEEeCCCeeEEEeccc---eEEEecc--ccccccc
Q 020021          263 GMFV-ISGSGDGSVYAWSVRSG---KEVASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSFWIP--DLSKLGA  327 (332)
Q Consensus       263 g~~l-~sgs~Dg~i~vWd~~~~---~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~---d~~~w~~--~~~~~~~  327 (332)
                      |++| ++...++.|.+|++...   +.+..+..+...+..++|+||+++|++++.   .+.+|..  +..+|.+
T Consensus       251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            9987 45566899999999732   445556666667899999999987766543   3888954  4444443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=2.1e-22  Score=197.47  Aligned_cols=277  Identities=11%  Similarity=0.059  Sum_probs=193.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC---
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD---  110 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~---  110 (332)
                      ...|.+++|||| ++++.+ .|+++++||+.+++.... ..+...+..++|+|+++.++++.    ++.|++||+.+   
T Consensus        81 ~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~~----~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYVR----NHNLYIARGGKLGE  153 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEEE----TTEEEEEECBCTTS
T ss_pred             ccCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEEE----CCeEEEEecCcccc
Confidence            367999999999 666554 469999999998876543 34455677889999999998863    68999999998   


Q ss_pred             --CceEEEeeccccc--------------EEEEEecCCCCeEEEee---------------------------------C
Q 020021          111 --NKYLRYFKGHHDR--------------VVSLSLCSSKDCFISGS---------------------------------L  141 (332)
Q Consensus       111 --~~~~~~~~~h~~~--------------V~~v~~~~~~~~l~s~s---------------------------------~  141 (332)
                        ++.......+...              +.++.|+|||++|++++                                 .
T Consensus       154 ~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~  233 (706)
T 2z3z_A          154 GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH  233 (706)
T ss_dssp             CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred             cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence              8776655555443              37899999999999998                                 4


Q ss_pred             CCcEEEEeCCCceEEEEEEec----CceeEEEcCCCeEEE-EEeCC-----EEEEEECccCCCCCeeEEEecCCC---CC
Q 020021          142 DRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFA-VAFGG-----YIRMFDARKYEKGPFDIFSVGGDI---SD  208 (332)
Q Consensus       142 Dg~i~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~-----~i~vwd~~~~~~~~~~~~~~~~~~---~~  208 (332)
                      +..|.+||+.+++........    ......+++++..++ +..++     .|.+||+....  ...........   ..
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVEP  311 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCCC
T ss_pred             eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeECc
Confidence            468999999988765433211    123467788886444 44554     89999987541  11111111111   12


Q ss_pred             ceeEEEcC--CCCEEEEEcCCCeEEEEEcc-CCeEeEEeeecCCCCCcceE-EEECCCCCEEEEEcC-CC----cEEEEE
Q 020021          209 ANVVKFSN--DGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLE-ASFSPEGMFVISGSG-DG----SVYAWS  279 (332)
Q Consensus       209 v~~v~~s~--dg~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~-v~~spdg~~l~sgs~-Dg----~i~vWd  279 (332)
                      +..++|||  ||++++++..++.+++|++. .+..+..+.   .+...+.. ++|+|||+.|+.++. ++    .|+.||
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~---~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT---KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC---CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred             cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC---CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence            35689999  99999999999999998876 555555443   23344555 799999988766544 44    677778


Q ss_pred             CCCCceEEEecCCCCCCceEEeCCCeeEEEeccc------eEEEecccccc
Q 020021          280 VRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS------ELSFWIPDLSK  324 (332)
Q Consensus       280 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~------d~~~w~~~~~~  324 (332)
                      +.+++ +..+. +...+..++|+||+++++....      ++.+|+.+..+
T Consensus       389 ~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          389 IKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             TTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             cCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            77765 34443 5667889999999988776533      27777765443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=6.1e-23  Score=197.16  Aligned_cols=269  Identities=11%  Similarity=0.063  Sum_probs=187.1

Q ss_pred             CCcEEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC--
Q 020021           34 NGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--  110 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~-D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~--  110 (332)
                      ..+|.+++|+|||++||+++. |++++||++.+++..+....+...+..++|+|+ +.++++...+-+...++|.+..  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            457999999999999999887 999999999777665444333356888899988 4444443212255567765543  


Q ss_pred             -CceEEEeecccccEEEEEecCCCC--eEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEE-EEeC----C
Q 020021          111 -NKYLRYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA-VAFG----G  182 (332)
Q Consensus       111 -~~~~~~~~~h~~~V~~v~~~~~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~  182 (332)
                       +... .+..+. .+...+|+|+++  .+++++.|+. .+||+.++++......+. ....+++++..++ ++.+    .
T Consensus       100 ~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A          100 PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEE
T ss_pred             CCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCe
Confidence             2222 333222 233557888776  4555555555 599998887766555444 5567778776665 4444    6


Q ss_pred             EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC--eEEEEEccCCeEeEEeeecCCCCCcceEEE--
Q 020021          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS--  258 (332)
Q Consensus       183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~--  258 (332)
                      .|++||+...+   ..  .+..+...+..++|||||+.++++..++  +|++||+.+++.. .+.   .+...+..++  
T Consensus       176 ~i~~~d~~~g~---~~--~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~---~~~~~~~~~~~~  246 (582)
T 3o4h_A          176 SLFTSNLSSGG---LR--VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE---LPSKDFSSYRPT  246 (582)
T ss_dssp             EEEEEETTTCC---CE--EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC---CSCSHHHHHCCS
T ss_pred             EEEEEcCCCCC---ce--EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc---CCCcChhhhhhc
Confidence            79999986533   22  2334555678899999999999888888  8999999988766 332   2334444556  


Q ss_pred             ------ECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce---EEEecccc
Q 020021          259 ------FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFWIPDL  322 (332)
Q Consensus       259 ------~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d---~~~w~~~~  322 (332)
                            |||||+.+++++.|+++++|++  ++...   ...+.+..++|+ +++++++++.+   -.+|.++.
T Consensus       247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          247 AITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             EEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             cccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence                  9999999999999999999999  66544   233567889999 99888887765   45555544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=1.1e-20  Score=168.05  Aligned_cols=277  Identities=10%  Similarity=0.106  Sum_probs=183.4

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEEcCCCee-eEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~-D~tv~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      +.+....+..+...+ +++|+|+|++++.++. |+.|.+||+.+++. ...+..+..+...++|+|+++.++++...+.+
T Consensus        29 ~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  107 (331)
T 3u4y_A           29 TLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHP  107 (331)
T ss_dssp             TCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSS
T ss_pred             ccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCc
Confidence            345556666666777 9999999997666555 89999999999887 66666665555558999999988843321111


Q ss_pred             ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEE-EeeCCCc-EEEEeCCCceEEE-----EEEe-cCceeEEEcCC
Q 020021          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRT-VLLWDQRAEKCQG-----LLRV-QGRPAAAYDDQ  172 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~-s~s~Dg~-i~iWd~~~~~~~~-----~~~~-~~~~~~~~~~~  172 (332)
                      +.|.+||+.+++.+..+..+ ....+++|+|++++++ +...++. |.+|++.......     .+.. .......++++
T Consensus       108 ~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spd  186 (331)
T 3u4y_A          108 FNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPD  186 (331)
T ss_dssp             CEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTT
T ss_pred             ccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCC
Confidence            28999999999888777654 4468999999998555 4456688 9999987533221     1111 12235677888


Q ss_pred             CeEE-EEE-eCCEEEEEECccCCCC-CeeEEEecCCCCCceeEEEcCCCCEEEEE-cCCCeEEEEEccCCeE--eEEeee
Q 020021          173 GLVF-AVA-FGGYIRMFDARKYEKG-PFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTL--LSTYNV  246 (332)
Q Consensus       173 ~~~~-~~~-~~~~i~vwd~~~~~~~-~~~~~~~~~~~~~v~~v~~s~dg~~l~~~-~~dg~i~i~d~~~~~~--~~~~~~  246 (332)
                      +..+ .+. .++.|++||+...+.. ....+..   ...+..++|+|||++++++ ..++.|.+||..+++.  +..+..
T Consensus       187 g~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~  263 (331)
T 3u4y_A          187 GNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH  263 (331)
T ss_dssp             SSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence            8644 444 3689999998754320 0222222   2456789999999976655 4578899999998887  333321


Q ss_pred             c----CCCCCcceEEEECCCCCEEEEEc-CCCcEEEEECCCCceEEEecCCCCCCceEEeCCCe
Q 020021          247 K----PVSRNSTLEASFSPEGMFVISGS-GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS  305 (332)
Q Consensus       247 ~----~~~~~~~~~v~~spdg~~l~sgs-~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~  305 (332)
                      .    +........++|+|||++|+.++ .++.|++||+.+. .+.....+...-....++|+.
T Consensus       264 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          264 GLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK-VVGYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             CCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC-EEEECTTCCCBSCEEECCCC-
T ss_pred             ccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC-cccceecccccCCeEEECCcc
Confidence            1    11111123479999999886654 5669999999764 345444444333334456654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=1.4e-23  Score=206.30  Aligned_cols=279  Identities=10%  Similarity=0.056  Sum_probs=193.6

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc---ceeEEEEccCCCEEEEecCCC------CCceeEEE
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY---GVDLVCFTSHPTTVIYSSKNG------WDESLRLL  106 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~s~~g------~d~~v~v~  106 (332)
                      .+.+++|+|||+++++ +.|++|++||+.++++...+..+..   .+..++|+|+++.+++++...      .++.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678899999998876 7899999999999998877776654   488999999999998886421      23789999


Q ss_pred             EccCCceEEEe---ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--c-----------------
Q 020021          107 SLHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--R-----------------  164 (332)
Q Consensus       107 d~~~~~~~~~~---~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~-----------------  164 (332)
                      |+.+++. ..+   .+|...+..++|+|||+.|++++. +.|++||..+++.........  .                 
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            9998875 333   345556889999999999999986 799999998877654443211  1                 


Q ss_pred             -eeEEEcCCCeEEEEE-eCC----------------------------------EEEEEECccCCCCCeeEEEecC----
Q 020021          165 -PAAAYDDQGLVFAVA-FGG----------------------------------YIRMFDARKYEKGPFDIFSVGG----  204 (332)
Q Consensus       165 -~~~~~~~~~~~~~~~-~~~----------------------------------~i~vwd~~~~~~~~~~~~~~~~----  204 (332)
                       ....+++++..++.+ .++                                  .|++||+...+.  ..  .+..    
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~--~l~~~~~~  250 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--DL--EMMPPDDP  250 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--CE--ECCCCCCG
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--eE--EeeCCccC
Confidence             346788888655443 332                                  788888865431  01  1111    


Q ss_pred             --CCCCceeEEEcCCCCEEEEEcC----CCeEEEEEccCCeEeEEeeecCCCCCcc----eEEEECCCCCEEEE--EcCC
Q 020021          205 --DISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGTLLSTYNVKPVSRNST----LEASFSPEGMFVIS--GSGD  272 (332)
Q Consensus       205 --~~~~v~~v~~s~dg~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~----~~v~~spdg~~l~s--gs~D  272 (332)
                        +...+..++|||||+++++...    +..|++||+.+++....+...  +...+    ..++|||||++|+.  ...|
T Consensus       251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~  328 (723)
T 1xfd_A          251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQ  328 (723)
T ss_dssp             GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE--CSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred             CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec--cCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence              1235678999999998876643    357999999988876544321  11221    26799999997775  4566


Q ss_pred             C------cEEEEE-CCCCc--eEEEecCCCCCCce-EEeCCCeeEEEecc-----ceEEEeccccc
Q 020021          273 G------SVYAWS-VRSGK--EVASWMSFDTEPPV-IKWTPGSLMFVTGS-----SELSFWIPDLS  323 (332)
Q Consensus       273 g------~i~vWd-~~~~~--~~~~~~~~~~~v~~-l~~sp~~~~l~t~~-----~d~~~w~~~~~  323 (332)
                      +      .|++|| ..+++  +...+......+.. ++|+||++.|+..+     ...++|..+..
T Consensus       329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            6      577777 34443  14444433333443 68999998876543     23889987653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=8.6e-22  Score=174.89  Aligned_cols=257  Identities=12%  Similarity=0.014  Sum_probs=184.5

Q ss_pred             ccceeEecc-CCC-cEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeEEeeecc-----cceeEEEEccCCCEEEEec
Q 020021           24 MEVGMSFRD-YNG-RISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKK-----YGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        24 ~~~~~~l~~-h~~-~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~s   95 (332)
                      .+..+.+.. +.. .+..++|+|+|+++ ++++.++.|.+||+.+++.+..+....     ..+..++|+++++.++++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  100 (337)
T 1pby_B           21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE  100 (337)
T ss_dssp             TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred             CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEe
Confidence            344555542 322 47889999999765 566778999999999999887765422     2466789999999888774


Q ss_pred             CC------C---CCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-ce
Q 020021           96 KN------G---WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RP  165 (332)
Q Consensus        96 ~~------g---~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~  165 (332)
                      ..      .   .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+.+  ++.|.+||+.+++....+.... ..
T Consensus       101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~  177 (337)
T 1pby_B          101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEA  177 (337)
T ss_dssp             EEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTT
T ss_pred             cccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCC
Confidence            10      1   258999999999887777664 3457788999999988887  6899999999888766554332 11


Q ss_pred             eEEEcCCCeEEEEEe--CC-----------------------EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE
Q 020021          166 AAAYDDQGLVFAVAF--GG-----------------------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL  220 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~--~~-----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  220 (332)
                      ...+++++..+....  ++                       .|.+||....+.   .......+...+..++|+|||++
T Consensus       178 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~  254 (337)
T 1pby_B          178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---AMREVRIMDVFYFSTAVNPAKTR  254 (337)
T ss_dssp             TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---EEEEEEECSSCEEEEEECTTSSE
T ss_pred             CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc---eEeecCCCCCceeeEEECCCCCE
Confidence            113333333221111  11                       578999876432   12223333345678999999999


Q ss_pred             EEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC
Q 020021          221 MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF  292 (332)
Q Consensus       221 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~  292 (332)
                      ++++  ++.|++||+.+++.+..+...    ..+..++|+|||++|++++.|+.|++||+.+++.+..+...
T Consensus       255 l~~~--~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          255 AFGA--YNVLESFDLEKNASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEE--ESEEEEEETTTTEEEEEEECS----SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EEEe--CCeEEEEECCCCcCcceecCC----CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            8888  799999999999887766532    34568999999999999999999999999999888777544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=2e-22  Score=206.19  Aligned_cols=270  Identities=10%  Similarity=0.044  Sum_probs=202.1

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      ...+.+|.+.+.++.|+++ .++++++.|++++||.+.. +.....+..+. .+...+|+|+++.++++.    ++.+.+
T Consensus       196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~----~~~i~~  269 (1045)
T 1k32_A          196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK----GGSIYI  269 (1045)
T ss_dssp             EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE----TTEEEE
T ss_pred             eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe----CCEEEE
Confidence            3456899999999999988 6778889999999998753 44445555544 355679999999888874    678999


Q ss_pred             EEccCCceEEEeec-----------ccccEEEEEec-CCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcC
Q 020021          106 LSLHDNKYLRYFKG-----------HHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDD  171 (332)
Q Consensus       106 ~d~~~~~~~~~~~~-----------h~~~V~~v~~~-~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~  171 (332)
                      ||++... +..+.+           |...+..++|+ |+|++|++++ ++.+.+|+...+..........  .....++ 
T Consensus       270 ~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-  346 (1045)
T 1k32_A          270 FNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-  346 (1045)
T ss_dssp             ECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-
T ss_pred             ecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-
Confidence            9995443 345554           45578999999 9999999888 7899999988776443221111  1234455 


Q ss_pred             CCeEEE-EEeCCEEE-EEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021          172 QGLVFA-VAFGGYIR-MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       172 ~~~~~~-~~~~~~i~-vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (332)
                      ++..++ ++.+..+. +||+....   .  ..+.++...+..++|||||+.+++++.++.|++||+.+++......   .
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~~~---~--~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~---~  418 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRTGK---A--EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER---S  418 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCC---E--EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---C
T ss_pred             CCCeEEEEECCCceEEEEECCCCC---c--eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc---C
Confidence            554444 44456677 77875422   1  1222455678899999999999999999999999999988765553   3


Q ss_pred             CCCcceEEEECCCCCEEEEEcCCC----------cEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021          250 SRNSTLEASFSPEGMFVISGSGDG----------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       250 ~~~~~~~v~~spdg~~l~sgs~Dg----------~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      +...+..++|||||++|++++.++          .|++||+.+++ +..+..|...+..++|+|||+.|+.++.+
T Consensus       419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~  492 (1045)
T 1k32_A          419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYR  492 (1045)
T ss_dssp             SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred             CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence            445667899999999999987754          99999998876 67777787778889999999988877653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.2e-22  Score=199.27  Aligned_cols=283  Identities=10%  Similarity=0.098  Sum_probs=188.4

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee-EEeeecc-----------------cceeEEEEc
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-KTINSKK-----------------YGVDLVCFT   85 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~   85 (332)
                      .+....|..+.  +..+.|+  |+.+++++.|+ | +||+.+++.+ ..+..+.                 ..+..++|+
T Consensus        17 ~~~~~~~~~~~--~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s   90 (706)
T 2z3z_A           17 GKEFYNFYPEY--VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDA   90 (706)
T ss_dssp             -------------CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEET
T ss_pred             ccccccccccc--CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEEC
Confidence            34444555543  4556777  67788888888 8 9999999873 4444332                 458899999


Q ss_pred             cCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCC-----ceEEEEEE
Q 020021           86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-----EKCQGLLR  160 (332)
Q Consensus        86 ~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~-----~~~~~~~~  160 (332)
                      |+ ..++++.    ++.+++||+.+++.. .+..|...+..++|+|||++|+++ .|+.|++||+.+     ++......
T Consensus        91 pd-~~~~~~~----~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~  163 (706)
T 2z3z_A           91 GR-GLVVLFT----QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI  163 (706)
T ss_dssp             TT-TEEEEEE----TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS
T ss_pred             CC-CeEEEEE----CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc
Confidence            99 7777664    579999999887654 445577788899999999999985 789999999987     66544332


Q ss_pred             ecCc----------------eeEEEcCCCeEEEEEe----------------------------------CCEEEEEECc
Q 020021          161 VQGR----------------PAAAYDDQGLVFAVAF----------------------------------GGYIRMFDAR  190 (332)
Q Consensus       161 ~~~~----------------~~~~~~~~~~~~~~~~----------------------------------~~~i~vwd~~  190 (332)
                      ....                ....+++++..++.+.                                  +..|.+||+.
T Consensus       164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~  243 (706)
T 2z3z_A          164 DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA  243 (706)
T ss_dssp             CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred             CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence            2211                4567888886555443                                  2579999986


Q ss_pred             cCCCCCeeEEEe-cCCCCCceeEEEcCCCCEEEEEcCCC-----eEEEEEccCC-eEeEEeeec-CCCCCcceEEEECC-
Q 020021          191 KYEKGPFDIFSV-GGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRG-TLLSTYNVK-PVSRNSTLEASFSP-  261 (332)
Q Consensus       191 ~~~~~~~~~~~~-~~~~~~v~~v~~s~dg~~l~~~~~dg-----~i~i~d~~~~-~~~~~~~~~-~~~~~~~~~v~~sp-  261 (332)
                      ..+.   ..... ..+...+..++|||||+.+++++.++     .|++||+.++ ......... ......+..++|+| 
T Consensus       244 ~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~  320 (706)
T 2z3z_A          244 TGKT---VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPG  320 (706)
T ss_dssp             TTEE---EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             CCce---EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecC
Confidence            5321   11111 12334578899999999999887775     8999999988 433222111 11112235679999 


Q ss_pred             -CCCEEEEEcCCCcEEEEECC-CCceEEEecCCCCCCce-EEeCCCeeEEEec-cce----EEEecccc
Q 020021          262 -EGMFVISGSGDGSVYAWSVR-SGKEVASWMSFDTEPPV-IKWTPGSLMFVTG-SSE----LSFWIPDL  322 (332)
Q Consensus       262 -dg~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~~~~~v~~-l~~sp~~~~l~t~-~~d----~~~w~~~~  322 (332)
                       ||+++++++.||.++||++. +++.+..+..+...+.. ++|+||++.|+.+ ..+    ..+|.++.
T Consensus       321 ~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          321 SNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             CSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             CCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence             99999999999999999886 66777777777766766 7999999766544 332    57777654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=3.2e-22  Score=196.59  Aligned_cols=286  Identities=8%  Similarity=0.043  Sum_probs=192.9

Q ss_pred             eeEecHHHHhcccceeEeccCCC---cEEEEEECCCCCEEEEEeCC---------CcEEEEEcCCCeeeEEee---eccc
Q 020021           13 SLELSEEILQSMEVGMSFRDYNG---RISSMDFHKSSSYLVTASDD---------ESIRLYDVTAATCLKTIN---SKKY   77 (332)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~h~~---~I~~i~~s~dg~~l~tgs~D---------~tv~iwd~~~~~~~~~~~---~~~~   77 (332)
                      .+.+++.  .+.+....+.+|..   .|.+++|||||++|++++.|         +++.+||+.++++ ..+.   .+..
T Consensus        38 ~i~~~d~--~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~  114 (723)
T 1xfd_A           38 TVRLWNV--ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNA  114 (723)
T ss_dssp             CEEEBCG--GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSC
T ss_pred             CEEEEEC--CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccc
Confidence            4556553  23344566777775   49999999999999999875         6788999998876 3333   2333


Q ss_pred             ceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccE------------------EEEEecCCCCeEEEe
Q 020021           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV------------------VSLSLCSSKDCFISG  139 (332)
Q Consensus        78 ~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V------------------~~v~~~~~~~~l~s~  139 (332)
                      .+..++|+|+++.+++++    ++.|++||+.+++.......+...+                  .++.|+|||++|+++
T Consensus       115 ~~~~~~~SPdG~~la~~~----~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~  190 (723)
T 1xfd_A          115 KLQYAGWGPKGQQLIFIF----ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (723)
T ss_dssp             CCSBCCBCSSTTCEEEEE----TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             cccccEECCCCCEEEEEE----CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence            477889999999999886    3689999999988777666554433                  789999999999999


Q ss_pred             eCCC----------------------------------cEEEEeCCCceEEEEEEec--------CceeEEEcCCCeEEE
Q 020021          140 SLDR----------------------------------TVLLWDQRAEKCQGLLRVQ--------GRPAAAYDDQGLVFA  177 (332)
Q Consensus       140 s~Dg----------------------------------~i~iWd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  177 (332)
                      +.|+                                  +|++||+.++++...+..+        ......+++++.+++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~  270 (723)
T 1xfd_A          191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV  270 (723)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred             EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence            8664                                  7999999887653333321        123467788887665


Q ss_pred             EEe-C----CEEEEEECccCCCCCeeEEEecCCCCCc----eeEEEcCCCCEEEE--EcCCC------eEEEEE-ccCCe
Q 020021          178 VAF-G----GYIRMFDARKYEKGPFDIFSVGGDISDA----NVVKFSNDGRLMLL--TTMEG------HIHVLD-SFRGT  239 (332)
Q Consensus       178 ~~~-~----~~i~vwd~~~~~~~~~~~~~~~~~~~~v----~~v~~s~dg~~l~~--~~~dg------~i~i~d-~~~~~  239 (332)
                      ... .    ..|++||+...+.  ...... .+...+    ..++|||||+.++.  +..++      +|++|| ...++
T Consensus       271 ~~~~~~~~~~~i~~~d~~~g~~--~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          271 TWLNRAQNVSILTLCDATTGVC--TKKHED-ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             EEEETTSCEEEEEEEETTTCCE--EEEEEE-ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             EEEcCCCCeEEEEEEeCCCCcc--eEEEEe-ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence            442 2    4799999865321  111111 111112    36899999997665  45566      577777 34433


Q ss_pred             E--eEEeeecCCCCCcceE-EEECCCCCEEEEEcCC---CcEEEEECCCCc--eEEEecC---CCCCCceEEeCCCeeEE
Q 020021          240 L--LSTYNVKPVSRNSTLE-ASFSPEGMFVISGSGD---GSVYAWSVRSGK--EVASWMS---FDTEPPVIKWTPGSLMF  308 (332)
Q Consensus       240 ~--~~~~~~~~~~~~~~~~-v~~spdg~~l~sgs~D---g~i~vWd~~~~~--~~~~~~~---~~~~v~~l~~sp~~~~l  308 (332)
                      .  ...+.  .. ...+.. ++|||||++|+..+.+   +.++||++....  ....+..   |...+..++|+||++.+
T Consensus       348 ~~~~~~l~--~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l  424 (723)
T 1xfd_A          348 NDNIQSIT--SG-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFF  424 (723)
T ss_dssp             SCCCCBSC--CS-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEE
T ss_pred             ccceeEee--cC-CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEE
Confidence            0  22222  11 122333 6899999999766555   789999986432  2333433   56678899999999877


Q ss_pred             Eec
Q 020021          309 VTG  311 (332)
Q Consensus       309 ~t~  311 (332)
                      +..
T Consensus       425 ~~~  427 (723)
T 1xfd_A          425 LLK  427 (723)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=6e-21  Score=171.09  Aligned_cols=250  Identities=12%  Similarity=0.166  Sum_probs=167.2

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCe--eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~---D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      +..+...+..++|+|||+ |++++.   |+.|.+||+.+++  .+..+..+...+..++|+|+++.+++++.  .++.++
T Consensus        35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~--~~~~v~  111 (347)
T 3hfq_A           35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANY--HKGTAE  111 (347)
T ss_dssp             EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEET--TTTEEE
T ss_pred             eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeC--CCCEEE
Confidence            344556778899999999 554444   6899999998776  34444455666788999999998887753  368999


Q ss_pred             EEEccC-Cc--eEEEeec---------ccccEEEEEecCCCCeEEEeeCCCcEEEEeCC-CceEEEEE--Eec---Ccee
Q 020021          105 LLSLHD-NK--YLRYFKG---------HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLL--RVQ---GRPA  166 (332)
Q Consensus       105 v~d~~~-~~--~~~~~~~---------h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~-~~~~~~~~--~~~---~~~~  166 (332)
                      +|++.. +.  .+..+..         +...+.+++|+|+++.+++...++.|++||+. +++.....  ...   ....
T Consensus       112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence            999963 32  2222221         12348899999999977777788999999998 44433221  211   1224


Q ss_pred             EEEcCCCeEEEEE--eCCEEEEEECccCCCCCeeEE-EecCCC------CCceeEEEcCCCCEE-EEEcCCCeEEEEEcc
Q 020021          167 AAYDDQGLVFAVA--FGGYIRMFDARKYEKGPFDIF-SVGGDI------SDANVVKFSNDGRLM-LLTTMEGHIHVLDSF  236 (332)
Q Consensus       167 ~~~~~~~~~~~~~--~~~~i~vwd~~~~~~~~~~~~-~~~~~~------~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~  236 (332)
                      ..+++++..+.++  .++.|++|++.... +.+... ......      ..+..++|+|||+++ ++...++.|.+||+.
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQT-GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCC-CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            6788888744443  36899999986421 122111 111111      236779999999976 556678999999986


Q ss_pred             C-C--eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-CcEEEE--ECCCCceE
Q 020021          237 R-G--TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-GSVYAW--SVRSGKEV  286 (332)
Q Consensus       237 ~-~--~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-g~i~vW--d~~~~~~~  286 (332)
                      . +  +.+..+.   .+...+..++|+|||++|++++.+ +.|.+|  |..+++..
T Consensus       271 ~~g~~~~~~~~~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          271 ADGHLTLIQQIS---TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             GGGCEEEEEEEE---CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CCCcEEEeEEEe---cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            2 2  3333332   223446689999999998888754 899999  54556543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=2.5e-20  Score=168.05  Aligned_cols=249  Identities=12%  Similarity=0.165  Sum_probs=163.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCC----CcEEEEEcCC--Cee--eEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           33 YNGRISSMDFHKSSSYLVTASDD----ESIRLYDVTA--ATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D----~tv~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      |...+..++|+|||++|++++.|    +++.+|++..  ++.  +.....+......+++  +++.++++..  .++.+.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~--~~~~v~  123 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANY--SGGSIT  123 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEET--TTTEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEEC--CCCEEE
Confidence            67778889999999999999986    7999998865  443  2333333334455555  7777776653  378999


Q ss_pred             EEEccCCceEEEe------e--------cccccEEEEEecCCCCeEEEe-eCCCcEEEEeCCCceE------EEEEEecC
Q 020021          105 LLSLHDNKYLRYF------K--------GHHDRVVSLSLCSSKDCFISG-SLDRTVLLWDQRAEKC------QGLLRVQG  163 (332)
Q Consensus       105 v~d~~~~~~~~~~------~--------~h~~~V~~v~~~~~~~~l~s~-s~Dg~i~iWd~~~~~~------~~~~~~~~  163 (332)
                      +|++.....+..+      .        .+...+.+++|+|++++++.+ ..++.|++|++.....      ....   .
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~---~  200 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK---G  200 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE---E
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec---c
Confidence            9999754332211      1        123346789999999966554 4588999998764321      1000   0


Q ss_pred             ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc-CCCeEEEEEccCCeEe-
Q 020021          164 RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLL-  241 (332)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d~~~~~~~-  241 (332)
                                         .......              ........++|+|||+++++++ .++.|.+||+.++++. 
T Consensus       201 -------------------~~~~~~~--------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~  247 (361)
T 3scy_A          201 -------------------TPEAFKV--------------APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE  247 (361)
T ss_dssp             -------------------EEEEEEC--------------CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred             -------------------cccceec--------------CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence                               0000000              0112346789999999776665 7899999999877653 


Q ss_pred             -EEeeecCCCCCcceEEEECCCCCEEEEEcC--CCcEEEEECC--CCc--eEEEecCCCCCCceEEeCCCeeEEEeccc-
Q 020021          242 -STYNVKPVSRNSTLEASFSPEGMFVISGSG--DGSVYAWSVR--SGK--EVASWMSFDTEPPVIKWTPGSLMFVTGSS-  313 (332)
Q Consensus       242 -~~~~~~~~~~~~~~~v~~spdg~~l~sgs~--Dg~i~vWd~~--~~~--~~~~~~~~~~~v~~l~~sp~~~~l~t~~~-  313 (332)
                       ..+...+.+......++|+|||++|+.+..  ++.|.+|++.  +++  .+..+.. ...+..++|+||+++|++++. 
T Consensus       248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRD  326 (361)
T ss_dssp             EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETT
T ss_pred             eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECC
Confidence             223222223344568999999999977655  4899999995  444  3444444 557889999999987766652 


Q ss_pred             --eEEEecccc
Q 020021          314 --ELSFWIPDL  322 (332)
Q Consensus       314 --d~~~w~~~~  322 (332)
                        .+.+|.++.
T Consensus       327 ~~~v~v~~~d~  337 (361)
T 3scy_A          327 TNVIQIFERDQ  337 (361)
T ss_dssp             TTEEEEEEECT
T ss_pred             CCCEEEEEEEC
Confidence              388876653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=1.6e-20  Score=167.68  Aligned_cols=242  Identities=10%  Similarity=0.036  Sum_probs=178.2

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc-cceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEe
Q 020021           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (332)
Q Consensus        39 ~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~  117 (332)
                      ++++++++.++++++.|++|.+||+.+++.+..+..+. ..+..++|+++++.++.+..  .++.|.+||+.+++.+..+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~--~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC--CCCcEEEEeCCCCcEEEEE
Confidence            45678889999999999999999999999988886543 24678899999987766542  3789999999998887766


Q ss_pred             ecc------cccEEEEEecCCCCeEEEeeCC------------CcEEEEeCCCceE---EEEEEecC-ceeEEEcCCCeE
Q 020021          118 KGH------HDRVVSLSLCSSKDCFISGSLD------------RTVLLWDQRAEKC---QGLLRVQG-RPAAAYDDQGLV  175 (332)
Q Consensus       118 ~~h------~~~V~~v~~~~~~~~l~s~s~D------------g~i~iWd~~~~~~---~~~~~~~~-~~~~~~~~~~~~  175 (332)
                      ..+      ...+..++|+|+++++++++.+            +.|.+||+.+++.   ...+..+. .....+++++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l  161 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  161 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcE
Confidence            532      2347789999999999999876            8999999987432   22333222 234557777774


Q ss_pred             EEEEeCCEEEEEECccCCCCCeeEEEecC---------------------------------------------------
Q 020021          176 FAVAFGGYIRMFDARKYEKGPFDIFSVGG---------------------------------------------------  204 (332)
Q Consensus       176 ~~~~~~~~i~vwd~~~~~~~~~~~~~~~~---------------------------------------------------  204 (332)
                      +.  .++.|.+||....+.  ...+....                                                   
T Consensus       162 ~~--~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  237 (349)
T 1jmx_B          162 YV--AGPDIYKMDVKTGKY--TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  237 (349)
T ss_dssp             EE--ESSSEEEECTTTCCE--EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             EE--ccCcEEEEeCCCCce--eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence            44  345599999765321  00111000                                                   


Q ss_pred             ---------------CCCCceeEEEcC-CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021          205 ---------------DISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (332)
Q Consensus       205 ---------------~~~~v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s  268 (332)
                                     .......++++| ||++++++  ++.|++||+.+++.+..+...    ..+..++|+|||++|++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~  311 (349)
T 1jmx_B          238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD----HTYYCVAFDKKGDKLYL  311 (349)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS----SCCCEEEECSSSSCEEE
T ss_pred             EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC----CCccceEECCCCCEEEE
Confidence                           001345678889 99998888  889999999999887766532    23557999999999999


Q ss_pred             EcCCCcEEEEECCCCceEEEecCC
Q 020021          269 GSGDGSVYAWSVRSGKEVASWMSF  292 (332)
Q Consensus       269 gs~Dg~i~vWd~~~~~~~~~~~~~  292 (332)
                      ++.++.|++||+.+++.+..+...
T Consensus       312 ~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          312 GGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             ESBSSEEEEEETTTTEEEEEEECS
T ss_pred             ecCCCeEEEEeccccceeeeeecC
Confidence            999999999999999888776543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.7e-21  Score=180.67  Aligned_cols=206  Identities=9%  Similarity=0.104  Sum_probs=151.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC----------eeeEE-----eeecccceeEEEEccCCCEEEEec-C
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----------TCLKT-----INSKKYGVDLVCFTSHPTTVIYSS-K   96 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~----------~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~s-~   96 (332)
                      +...++.+++++++.++++++.|+ ++||+....          ..+..     ...+...|..++|++++..++.+. .
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            344688999999999999999998 999875311          00110     012344689999999999888421 1


Q ss_pred             CCCCceeEEEEccCC--------c---eEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEecCc
Q 020021           97 NGWDESLRLLSLHDN--------K---YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR  164 (332)
Q Consensus        97 ~g~d~~v~v~d~~~~--------~---~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~  164 (332)
                      ++.|++|++||+.++        +   .+..+.+|...|.+++|+|+ +++|++++.||+|++||++++......     
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~-----  188 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT-----  188 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE-----
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec-----
Confidence            345899999998764        1   25667789999999999997 789999999999999999876332110     


Q ss_pred             eeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe
Q 020021          165 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (332)
                                                            .++...+.+++|+|+|+++++++.||.|++||.+ ++....+
T Consensus       189 --------------------------------------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~  229 (434)
T 2oit_A          189 --------------------------------------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI  229 (434)
T ss_dssp             --------------------------------------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred             --------------------------------------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence                                                  0123467889999999999999999999999988 5555544


Q ss_pred             eecCC----CCCcceEEEECCCCCEEEEE-cCCC------cEEEEECCCC
Q 020021          245 NVKPV----SRNSTLEASFSPEGMFVISG-SGDG------SVYAWSVRSG  283 (332)
Q Consensus       245 ~~~~~----~~~~~~~v~~spdg~~l~sg-s~Dg------~i~vWd~~~~  283 (332)
                      ..+..    +...+.+++|++++.++++. +.||      .+++|++.+.
T Consensus       230 ~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          230 PCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            43221    12367889999999888654 3443      3999999764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.88  E-value=1.3e-20  Score=171.09  Aligned_cols=291  Identities=11%  Similarity=0.091  Sum_probs=193.4

Q ss_pred             ccceeEeccCCCcEEE-----EEECCCCCEEEEEeC-CCc--EEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEec
Q 020021           24 MEVGMSFRDYNGRISS-----MDFHKSSSYLVTASD-DES--IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~-----i~~s~dg~~l~tgs~-D~t--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      ......|..|.+....     .+|||||++|+.++. |++  |.+||+.+++..+....+...+...+|+|+++.+++++
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~   99 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK   99 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred             CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence            3445667778777766     889999999999887 664  88889999988776666555554568999999999886


Q ss_pred             CCCCCceeEEEEccCCceEEEeecccccEEEEE--ecCCCCeEEE----------------------eeCCCcEEEEeCC
Q 020021           96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLS--LCSSKDCFIS----------------------GSLDRTVLLWDQR  151 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~--~~~~~~~l~s----------------------~s~Dg~i~iWd~~  151 (332)
                      .   +..+++||+.+++....+..+...+....  ++++++.++.                      .+.+..|.+||+.
T Consensus       100 ~---~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  176 (388)
T 3pe7_A          100 D---GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK  176 (388)
T ss_dssp             T---TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred             C---CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence            4   56899999999988777777766664444  4889988874                      3355789999999


Q ss_pred             CceEEEEEEecC-ceeEEEcC-CCeEEEEEe-C------CEEEEEECccCCCCCeeEEEecCCC--CCceeEEEcCCCCE
Q 020021          152 AEKCQGLLRVQG-RPAAAYDD-QGLVFAVAF-G------GYIRMFDARKYEKGPFDIFSVGGDI--SDANVVKFSNDGRL  220 (332)
Q Consensus       152 ~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~-~------~~i~vwd~~~~~~~~~~~~~~~~~~--~~v~~v~~s~dg~~  220 (332)
                      +++......... .....+++ ++..++... +      ..|.++|......   .  .+....  ..+...+|||||+.
T Consensus       177 ~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~--~l~~~~~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          177 TGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM---R--KVKTHAEGESCTHEFWVPDGSA  251 (388)
T ss_dssp             TCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC---E--ESCCCCTTEEEEEEEECTTSSC
T ss_pred             CCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce---E--EeeeCCCCcccccceECCCCCE
Confidence            887655443332 23456778 776554333 2      2677777643221   1  111111  13556789999997


Q ss_pred             EEEEcC-CC----eEEEEEccCCeEeEEeeecCC-CC-CcceEEEECCCCCEEEEE---------cCCCcEEEEECCCCc
Q 020021          221 MLLTTM-EG----HIHVLDSFRGTLLSTYNVKPV-SR-NSTLEASFSPEGMFVISG---------SGDGSVYAWSVRSGK  284 (332)
Q Consensus       221 l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~-~~-~~~~~v~~spdg~~l~sg---------s~Dg~i~vWd~~~~~  284 (332)
                      |+..+. ++    .|++||+.+++.......... +. ......+|+|||++|+..         ..+..|++||+.+++
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence            755433 22    399999998875332221110 00 001123799999988854         456689999998765


Q ss_pred             eEEEecCCCC-----------CCceEEeCCCeeEEEeccc---eEEEeccccc
Q 020021          285 EVASWMSFDT-----------EPPVIKWTPGSLMFVTGSS---ELSFWIPDLS  323 (332)
Q Consensus       285 ~~~~~~~~~~-----------~v~~l~~sp~~~~l~t~~~---d~~~w~~~~~  323 (332)
                      . ..+..+..           .+..++|+|||+.|+..+.   ...+|..++.
T Consensus       332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          332 Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP  383 (388)
T ss_dssp             E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             e-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence            4 45555555           5788999999987776543   3777776553

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=1.8e-20  Score=162.72  Aligned_cols=238  Identities=10%  Similarity=0.051  Sum_probs=166.6

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeeeEEeeecc-cceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      ..+..|.+.|.+++|+|+|++|++++ |+.|++||+.+ ++.......+. ..+..++|+|+++.++++... .++..++
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~~~~~l  112 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKV-EFGKSAI  112 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECT-TTSSCEE
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeC-CCCcceE
Confidence            35677899999999999999999887 88999999998 87776665553 567789999999999887632 1345556


Q ss_pred             EEc--cCCceEEEeecccccEEEEEecCCCCeEE-EeeCCCcEEEEeC--CCceEEEEEEec-CceeEEEcCCCeEEE-E
Q 020021          106 LSL--HDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQ--RAEKCQGLLRVQ-GRPAAAYDDQGLVFA-V  178 (332)
Q Consensus       106 ~d~--~~~~~~~~~~~h~~~V~~v~~~~~~~~l~-s~s~Dg~i~iWd~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~  178 (332)
                      |.+  .+++ ...+..+. .+..++|+|+++.|+ +++.|+.+++|++  .++......... ......+++++..++ +
T Consensus       113 ~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  190 (297)
T 2ojh_A          113 YLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFN  190 (297)
T ss_dssp             EEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEE
Confidence            554  4444 34444443 488999999999877 7889999999985  334332222111 223466777776544 4


Q ss_pred             E-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC-----------CeEEEEEccCCeEeEEeee
Q 020021          179 A-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----------GHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       179 ~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~  246 (332)
                      + .++.+++|++..... .  ...+..+...+..++|+|||+++++++.+           +.|++||+.+++.......
T Consensus       191 ~~~~~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  267 (297)
T 2ojh_A          191 SSRTGQMQIWRVRVDGS-S--VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL  267 (297)
T ss_dssp             ECTTSSCEEEEEETTSS-C--EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred             ecCCCCccEEEECCCCC-C--cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence            4 378899998753221 1  12233334467789999999999888765           5699999988765433321


Q ss_pred             cCCCCCcceEEEECCCCCEEEEEcCCC
Q 020021          247 KPVSRNSTLEASFSPEGMFVISGSGDG  273 (332)
Q Consensus       247 ~~~~~~~~~~v~~spdg~~l~sgs~Dg  273 (332)
                      . .+...+..++|+|||++|++++.|.
T Consensus       268 ~-~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          268 F-GGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             E-ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             C-CCCcccccceECCCCCEEEEEEecc
Confidence            1 2345567789999999999987764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=9.3e-20  Score=164.99  Aligned_cols=254  Identities=9%  Similarity=0.058  Sum_probs=169.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC-CCeeeEEeeec-ccceeEEEEccCCCEE-EEecC------CC-----
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTINSK-KYGVDLVCFTSHPTTV-IYSSK------NG-----   98 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~s~------~g-----   98 (332)
                      ....+..++|+|||++|++++.+ +|.+||+. +++........ ......++++|+++.+ ++.+.      .+     
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            44567889999999999999998 99999997 78765433211 1124457889999863 33321      01     


Q ss_pred             CCceeEEEEcc-CCceEEEee----cccccEEEEEecCCCCeEEEeeC-CCcEEEEeCC-CceEEEEEEecCceeEEEcC
Q 020021           99 WDESLRLLSLH-DNKYLRYFK----GHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQR-AEKCQGLLRVQGRPAAAYDD  171 (332)
Q Consensus        99 ~d~~v~v~d~~-~~~~~~~~~----~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~-~~~~~~~~~~~~~~~~~~~~  171 (332)
                      .++++.+|++. .++....+.    .+...+.+++|+|+|++++++.. ++.|++||+. +++.......          
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~----------  186 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV----------  186 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE----------
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE----------
Confidence            47889999997 465544443    25567999999999998877654 6799999987 5543211000          


Q ss_pred             CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc-CCCeEEEEEcc--CCeEeE---Eee
Q 020021          172 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSF--RGTLLS---TYN  245 (332)
Q Consensus       172 ~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d~~--~~~~~~---~~~  245 (332)
                                                   ....+......++|||||+++++++ .++.|.+|+..  ++++..   .+.
T Consensus       187 -----------------------------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  237 (365)
T 1jof_A          187 -----------------------------DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             -----------------------------ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             -----------------------------ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence                                         0000012356789999999887665 57899999765  565432   222


Q ss_pred             ecCCC----CC------cceEEE-ECCCCCEEEEEcCCC------cEEEEECC-CCceEE---EecCCCCCCceEEeCC-
Q 020021          246 VKPVS----RN------STLEAS-FSPEGMFVISGSGDG------SVYAWSVR-SGKEVA---SWMSFDTEPPVIKWTP-  303 (332)
Q Consensus       246 ~~~~~----~~------~~~~v~-~spdg~~l~sgs~Dg------~i~vWd~~-~~~~~~---~~~~~~~~v~~l~~sp-  303 (332)
                      ..+..    ..      .+..++ |||||++|++++.+.      +|.+|++. +++...   ....+...+..++|+| 
T Consensus       238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~  317 (365)
T 1jof_A          238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC  317 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred             cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence            11111    11      466899 999999988775433      89999996 565432   1333555678899999 


Q ss_pred             --CeeEEEeccc---eEEEecccccccc
Q 020021          304 --GSLMFVTGSS---ELSFWIPDLSKLG  326 (332)
Q Consensus       304 --~~~~l~t~~~---d~~~w~~~~~~~~  326 (332)
                        |+++|+++..   .+.+|+++...|.
T Consensus       318 ~~dg~~l~v~~~~~~~v~v~~~~~~~l~  345 (365)
T 1jof_A          318 PWSDEWMAITDDQEGWLEIYRWKDEFLH  345 (365)
T ss_dssp             TTCTTEEEEECSSSCEEEEEEEETTEEE
T ss_pred             CcCCCEEEEEEcCCCeEEEEEEchhhCc
Confidence              7888777653   4899988776553

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=7.6e-19  Score=157.07  Aligned_cols=239  Identities=11%  Similarity=0.151  Sum_probs=175.2

Q ss_pred             cceeEEEEccCCCEEEEecCCCC----CceeEEEEccCCceEEEeecccccEEEEEecCCCCe-EEEeeCCCcEEEEeCC
Q 020021           77 YGVDLVCFTSHPTTVIYSSKNGW----DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQR  151 (332)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~s~~g~----d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~-l~s~s~Dg~i~iWd~~  151 (332)
                      ..+..++++++++.+++++..+.    ++.|.+||..+++.+..+... ..+..+.|+|++++ +++...++.|.+||.+
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            34677899999999888775543    678999999999888777643 44778999999984 5566678999999999


Q ss_pred             CceEEEEEEecC-----------ceeEEEcCCCe-EEEEEe--CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC
Q 020021          152 AEKCQGLLRVQG-----------RPAAAYDDQGL-VFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  217 (332)
Q Consensus       152 ~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~--~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d  217 (332)
                      +++....+....           .....+++++. ++.+..  ++.|.+||....+.    ..........+..++|+||
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~s~d  195 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL----KTAIQNTGKMSTGLALDSE  195 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE----EEEECCCCTTCCCCEEETT
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce----EEEecCCCCccceEEECCC
Confidence            988877665532           13356777665 444442  68899999875321    1122212234678899999


Q ss_pred             CCEEEEEcCCCeEEEEEccCCeEeEEeeecCC-CCCcceEEEECCCCCEEEEEcC-CCcEEEEECCCCceEEEecCCCCC
Q 020021          218 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-SRNSTLEASFSPEGMFVISGSG-DGSVYAWSVRSGKEVASWMSFDTE  295 (332)
Q Consensus       218 g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~v~~spdg~~l~sgs~-Dg~i~vWd~~~~~~~~~~~~~~~~  295 (332)
                      |+.+++++.++.|.+||..+++.+..+..... +...+..++|+|||++++.++. ++.|++||+.+++.+..+....  
T Consensus       196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--  273 (353)
T 3vgz_A          196 GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--  273 (353)
T ss_dssp             TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--
T ss_pred             CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--
Confidence            99999999999999999999998877654221 3345567899999998777755 4899999999998877765433  


Q ss_pred             CceEEeCCCee-EEEeccc--eEEEecccc
Q 020021          296 PPVIKWTPGSL-MFVTGSS--ELSFWIPDL  322 (332)
Q Consensus       296 v~~l~~sp~~~-~l~t~~~--d~~~w~~~~  322 (332)
                      ...++|+|+++ ++++...  .+.+|+...
T Consensus       274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            36799999997 4455433  377787653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.86  E-value=1e-18  Score=158.16  Aligned_cols=273  Identities=12%  Similarity=0.084  Sum_probs=190.5

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeEEeeec------ccceeEEEEcc
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSK------KYGVDLVCFTS   86 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs----------~D~tv~iwd~~~~~~~~~~~~~------~~~v~~~~~~~   86 (332)
                      ..++...+..+..+  .+.|+|||+++..++          .|++|.+||+.+++.+.++...      ......++++|
T Consensus        40 t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp  117 (361)
T 2oiz_A           40 NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT  117 (361)
T ss_dssp             TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred             CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC
Confidence            44556677777666  899999999998876          3678999999999998887643      12355689999


Q ss_pred             CCCEEEEecCCCCCceeEEEEccCCceEEE-eecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCC-ceEEEEEEe--
Q 020021           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRY-FKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRA-EKCQGLLRV--  161 (332)
Q Consensus        87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~-~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~-~~~~~~~~~--  161 (332)
                      +++.++.+.. +.+++|.+||+.+++.+.. +.. .. ...+.+.|++ ..+++.+.||.+.+|+... ++.......  
T Consensus       118 dg~~l~v~n~-~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~  194 (361)
T 2oiz_A          118 DGKFIVLQNA-SPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ  194 (361)
T ss_dssp             TSSEEEEEEE-SSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC
T ss_pred             CCCEEEEECC-CCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc
Confidence            9999888753 2257899999999988776 442 22 2335566765 6888999999999999865 444322110  


Q ss_pred             ----cCce-eEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecC--------CCCCceeEEEcCCCCEEEEEcC-
Q 020021          162 ----QGRP-AAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDGRLMLLTTM-  226 (332)
Q Consensus       162 ----~~~~-~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~--------~~~~v~~v~~s~dg~~l~~~~~-  226 (332)
                          ...+ .....+ ...++....++.+.++|+..........+....        .......++|+||++.+.+... 
T Consensus       195 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~  274 (361)
T 2oiz_A          195 MFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP  274 (361)
T ss_dssp             CSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred             eEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence                0001 001111 234444556788999998643211111111100        0112234789999876665432 


Q ss_pred             ----------CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCC--ceEEEecCCCC
Q 020021          227 ----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG--KEVASWMSFDT  294 (332)
Q Consensus       227 ----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~--~~~~~~~~~~~  294 (332)
                                .+.|.+||..+++.+.++..   +.  ...++|+|||++|++++. ++|.+||..++  +.+..+..+..
T Consensus       275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~~---~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~  348 (361)
T 2oiz_A          275 DGKEGTHKFPAAEIWVMDTKTKQRVARIPG---RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAE  348 (361)
T ss_dssp             SCCTTCTTCCCSEEEEEETTTTEEEEEEEC---TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCS
T ss_pred             CCCcccccCCCceEEEEECCCCcEEEEEec---CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCC
Confidence                      35899999999999888764   22  778999999999999987 99999999999  88888777777


Q ss_pred             CCceEEeCCCee
Q 020021          295 EPPVIKWTPGSL  306 (332)
Q Consensus       295 ~v~~l~~sp~~~  306 (332)
                      .+..++++|+|+
T Consensus       349 ~P~~~~~~p~G~  360 (361)
T 2oiz_A          349 ASLQVQFHPVGG  360 (361)
T ss_dssp             SEEEEEECCCSC
T ss_pred             CcEEEEecCCCC
Confidence            889999999985

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=4.6e-20  Score=181.31  Aligned_cols=277  Identities=12%  Similarity=0.088  Sum_probs=182.3

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc---ceeEEEEccCCCEEEEecCC------CCCceeEEEEcc
Q 020021           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY---GVDLVCFTSHPTTVIYSSKN------GWDESLRLLSLH  109 (332)
Q Consensus        39 ~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~s~~------g~d~~v~v~d~~  109 (332)
                      +++|+|||.++++ +.|++|++||+.++++...+..+..   .+..++|+|+++.+++++..      +.++.+++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6789999965554 5699999999999998877766544   48899999999999887631      125789999999


Q ss_pred             CCceE--EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--------------------ceeE
Q 020021          110 DNKYL--RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--------------------RPAA  167 (332)
Q Consensus       110 ~~~~~--~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--------------------~~~~  167 (332)
                      +++.+  ..+   ...+..++|+|||+.|++++ |++|++||+.++++........                    ....
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            88752  122   35688899999999999885 7899999998876543221110                    0256


Q ss_pred             EEcCCCeEEEEE-eCC----------------------------------EEEEEECccCCCC-CeeEE---EecCCCCC
Q 020021          168 AYDDQGLVFAVA-FGG----------------------------------YIRMFDARKYEKG-PFDIF---SVGGDISD  208 (332)
Q Consensus       168 ~~~~~~~~~~~~-~~~----------------------------------~i~vwd~~~~~~~-~~~~~---~~~~~~~~  208 (332)
                      .++|++..++.+ .+.                                  .|++||+...+.. ...+.   .+.++...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            788888655544 331                                  7888987643210 00000   01123345


Q ss_pred             ceeEEEcCCCCEEEEEcCC----CeEEEEE----ccCCeEeEEee-ecCCCCCcce-----EEEECCCCCEEEE--EcCC
Q 020021          209 ANVVKFSNDGRLMLLTTME----GHIHVLD----SFRGTLLSTYN-VKPVSRNSTL-----EASFSPEGMFVIS--GSGD  272 (332)
Q Consensus       209 v~~v~~s~dg~~l~~~~~d----g~i~i~d----~~~~~~~~~~~-~~~~~~~~~~-----~v~~spdg~~l~s--gs~D  272 (332)
                      +..++||||++++++....    ..|.+||    ..+++...... ....+...+.     .++|||||+.|+.  ...+
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  334 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD  334 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence            6889999999877764433    2488899    77776543331 0012233333     6789999996554  4455


Q ss_pred             C--cEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEE-eccc------eEEEecccc
Q 020021          273 G--SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TGSS------ELSFWIPDL  322 (332)
Q Consensus       273 g--~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-t~~~------d~~~w~~~~  322 (332)
                      |  .|++||+.+++ ...+..+...+..+.++ +++.++ ++..      ..++|..+.
T Consensus       335 g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          335 GYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             SCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             CceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            5  57777877665 45555555556666666 665444 4332      388887754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=6.9e-18  Score=150.45  Aligned_cols=228  Identities=10%  Similarity=0.065  Sum_probs=159.5

Q ss_pred             EEccCCCEEEEecCCCCCceeEEEEccCCceEEEeeccc-ccEEEEEecCCCCeE-EEeeCCCcEEEEeCCCceEEEEEE
Q 020021           83 CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLR  160 (332)
Q Consensus        83 ~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~-~~V~~v~~~~~~~~l-~s~s~Dg~i~iWd~~~~~~~~~~~  160 (332)
                      ++.+++..+++++.   +++|.+||+.+++.+..+..+. ..+..++|+|+++++ ++...++.|.+||+.+++....+.
T Consensus         6 ~~~~~~~~~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            6 ALKAGHEYMIVTNY---PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCTTCEEEEEEET---TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccCCCEEEEEeCC---CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            45555555555543   7899999999998888776543 256789999999855 566678999999999888776665


Q ss_pred             ecC--------ceeEEEcCCCeEEEEEe-------------CCEEEEEECccCCC-CCeeEEEecCCCCCceeEEEcCCC
Q 020021          161 VQG--------RPAAAYDDQGLVFAVAF-------------GGYIRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDG  218 (332)
Q Consensus       161 ~~~--------~~~~~~~~~~~~~~~~~-------------~~~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~v~~s~dg  218 (332)
                      ...        .....+++++..+.++.             ++.|.+||+...+. .......   ....+..++|+|||
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~dg  159 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP---MPRQVYLMRAADDG  159 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE---CCSSCCCEEECTTS
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc---CCCcccceeECCCC
Confidence            432        23567778776555443             48999999875321 1122222   12357788999999


Q ss_pred             CEEEEEcCCCeEEEEEccCCeEeEEeeecCC-------------------------------------------------
Q 020021          219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-------------------------------------------------  249 (332)
Q Consensus       219 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------------------------------------------------  249 (332)
                      + +++++  +.|++||..+++.+..+.....                                                 
T Consensus       160 ~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  236 (349)
T 1jmx_B          160 S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  236 (349)
T ss_dssp             C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence            9 55543  3499999998887765542210                                                 


Q ss_pred             ----------------CCCcceEEEECC-CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc
Q 020021          250 ----------------SRNSTLEASFSP-EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       250 ----------------~~~~~~~v~~sp-dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                                      ....+..++|+| ||++++++  ++.|++||+.+++.+..+.. ...+..++|+|++++|++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEES
T ss_pred             EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEec
Confidence                            001234567889 99999988  88999999999887776653 34578999999997766655


Q ss_pred             ce--EEEecccc
Q 020021          313 SE--LSFWIPDL  322 (332)
Q Consensus       313 ~d--~~~w~~~~  322 (332)
                      .+  +.+|+++.
T Consensus       314 ~~~~v~v~d~~~  325 (349)
T 1jmx_B          314 TFNDLAVFNPDT  325 (349)
T ss_dssp             BSSEEEEEETTT
T ss_pred             CCCeEEEEeccc
Confidence            43  88888754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=2.4e-19  Score=177.03  Aligned_cols=276  Identities=8%  Similarity=0.084  Sum_probs=182.8

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccc---e--eEEEEccCCCEEEEecCC------CCCceeE
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYG---V--DLVCFTSHPTTVIYSSKN------GWDESLR  104 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~---v--~~~~~~~~~~~~~~~s~~------g~d~~v~  104 (332)
                      ...++.|+|||.+++++  |++|++||+.++++...+..+...   +  ..+.|+|+++.+++++..      ...+.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45688999999999886  999999999999988777776533   2  237889999999887631      0114667


Q ss_pred             EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec-------C-------------c
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-------G-------------R  164 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-------~-------------~  164 (332)
                      +||+++++.. .+..|...+...+|||||+.||.+ .|+.|.+||..++.........       +             .
T Consensus        96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            9999998754 477788899999999999999988 4789999999877644321100       0             0


Q ss_pred             eeEEEcCCCeEEE-EEeC-CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC---Ce
Q 020021          165 PAAAYDDQGLVFA-VAFG-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GT  239 (332)
Q Consensus       165 ~~~~~~~~~~~~~-~~~~-~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~---~~  239 (332)
                      ....++|++..++ ...| ..+++|++.......       .+......+.++++|..    .....|++||+.+   ++
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~-------~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~  242 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES-------LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVT  242 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT-------CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSS
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecCCC-------CCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCC
Confidence            1256788886544 3333 457888764332210       12234456677777753    2223789999988   73


Q ss_pred             E--eEEeeecC---CCCCcceEEEECCCCCEEEEEc----CCCcEEEEECCCCc----eE--EEe--cCCCCCCc-----
Q 020021          240 L--LSTYNVKP---VSRNSTLEASFSPEGMFVISGS----GDGSVYAWSVRSGK----EV--ASW--MSFDTEPP-----  297 (332)
Q Consensus       240 ~--~~~~~~~~---~~~~~~~~v~~spdg~~l~sgs----~Dg~i~vWd~~~~~----~~--~~~--~~~~~~v~-----  297 (332)
                      .  ...+....   .+...+..++|||||+.++...    .+..|++||+.+++    +.  ..+  ..|...+.     
T Consensus       243 ~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~  322 (740)
T 4a5s_A          243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS  322 (740)
T ss_dssp             CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred             cceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence            1  11222100   1445677899999999766653    33479999998887    21  112  34555554     


Q ss_pred             eEEeCCCeeEEE-eccc-----eEEEecccccccc
Q 020021          298 VIKWTPGSLMFV-TGSS-----ELSFWIPDLSKLG  326 (332)
Q Consensus       298 ~l~~sp~~~~l~-t~~~-----d~~~w~~~~~~~~  326 (332)
                      .++|+|||+.++ ..+.     .+.+|+.+.....
T Consensus       323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence            789999998776 4442     2555555554433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.82  E-value=1.1e-18  Score=158.39  Aligned_cols=280  Identities=10%  Similarity=0.028  Sum_probs=180.1

Q ss_pred             eeEeccCCCc-----EEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCC
Q 020021           27 GMSFRDYNGR-----ISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (332)
Q Consensus        27 ~~~l~~h~~~-----I~~i~~s~dg~~l~tgs~D---~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g   98 (332)
                      ...|..+...     +..++|||||++|+....+   ..|.+||+.+++.......+........|+|+++.+++.+.  
T Consensus        23 ~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~--  100 (396)
T 3c5m_A           23 VTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN--  100 (396)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET--
T ss_pred             eEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc--
Confidence            3445544433     6778999999998776543   46888899988765443333222333689999999988764  


Q ss_pred             CCceeEEEEccCCceEEEeecccccEEE-------------------EEecCCCCeEEEe-----eCCCcEEEEeCCCce
Q 020021           99 WDESLRLLSLHDNKYLRYFKGHHDRVVS-------------------LSLCSSKDCFISG-----SLDRTVLLWDQRAEK  154 (332)
Q Consensus        99 ~d~~v~v~d~~~~~~~~~~~~h~~~V~~-------------------v~~~~~~~~l~s~-----s~Dg~i~iWd~~~~~  154 (332)
                       +..+.+||+.+++.......+......                   +.++|+++.++..     ..+..|.+||+.+++
T Consensus       101 -~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (396)
T 3c5m_A          101 -ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE  179 (396)
T ss_dssp             -TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred             -CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence             458999999988876666655443322                   3567777766654     466789999998877


Q ss_pred             EEEEEEecC-ceeEEEcC-CCe-EEEEEeC------CEEEEEECccCCCCCeeEEEecCC--CCCceeEEEcCCCCEEEE
Q 020021          155 CQGLLRVQG-RPAAAYDD-QGL-VFAVAFG------GYIRMFDARKYEKGPFDIFSVGGD--ISDANVVKFSNDGRLMLL  223 (332)
Q Consensus       155 ~~~~~~~~~-~~~~~~~~-~~~-~~~~~~~------~~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~v~~s~dg~~l~~  223 (332)
                      ......... .....+++ ++. ++.++.+      ..|.+||+....   ..  .+..+  ...+..++|||||+.++.
T Consensus       180 ~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~--~l~~~~~~~~~~~~~~spdg~~l~~  254 (396)
T 3c5m_A          180 LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VR--KIKEHAEGESCTHEFWIPDGSAMAY  254 (396)
T ss_dssp             EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CE--ESSCCCTTEEEEEEEECTTSSCEEE
T ss_pred             EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---ee--EeeccCCCccccceEECCCCCEEEE
Confidence            655443322 23445666 454 4444432      357778865322   11  11111  123567899999998776


Q ss_pred             EcCC-----CeEEEEEccCCeEeEEeeecCCCCCcceEEEECC-CCCEEEEEc----------------CCCcEEEEECC
Q 020021          224 TTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGS----------------GDGSVYAWSVR  281 (332)
Q Consensus       224 ~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp-dg~~l~sgs----------------~Dg~i~vWd~~  281 (332)
                      .+.+     +.|++||+.+++........    . .. .+|+| ||++++.++                .+..|++||+.
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          255 VSYFKGQTDRVIYKANPETLENEEVMVMP----P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             EEEETTTCCEEEEEECTTTCCEEEEEECC----S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             EecCCCCccceEEEEECCCCCeEEeeeCC----C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            6543     44999999888654322211    1 12 78999 999998765                34789999998


Q ss_pred             CCceEEEecCCCC-----------CCceEEeCCCeeEEEeccc---eEEEeccc
Q 020021          282 SGKEVASWMSFDT-----------EPPVIKWTPGSLMFVTGSS---ELSFWIPD  321 (332)
Q Consensus       282 ~~~~~~~~~~~~~-----------~v~~l~~sp~~~~l~t~~~---d~~~w~~~  321 (332)
                      +++. ..+..+..           .+..++|+||++.++.++.   ...+|..+
T Consensus       329 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          329 AKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             TTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            7764 33444443           2567899999987776553   25666544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=1.2e-18  Score=171.25  Aligned_cols=284  Identities=9%  Similarity=0.080  Sum_probs=182.7

Q ss_pred             ceeEeccCCC---cEEEEEECCCCCEEEEEeC---------CCcEEEEEcCCCeee--EEeeecccceeEEEEccCCCEE
Q 020021           26 VGMSFRDYNG---RISSMDFHKSSSYLVTASD---------DESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTV   91 (332)
Q Consensus        26 ~~~~l~~h~~---~I~~i~~s~dg~~l~tgs~---------D~tv~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~   91 (332)
                      ....+.+|..   .|.+++|||||++|+.++.         |++|++||+.+++.+  ..+.   ..+..++|+|+++.+
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~l  124 (719)
T 1z68_A           48 SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---RPIQYLCWSPVGSKL  124 (719)
T ss_dssp             EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---SSBCCEEECSSTTCE
T ss_pred             EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---cccccceECCCCCEE
Confidence            3344555543   3889999999999999887         799999999998873  2222   357789999999999


Q ss_pred             EEecCCCCCceeEEEEccCCceEEEe-ecccccE-----------------EEEEecCCCCeEEEeeCCC----------
Q 020021           92 IYSSKNGWDESLRLLSLHDNKYLRYF-KGHHDRV-----------------VSLSLCSSKDCFISGSLDR----------  143 (332)
Q Consensus        92 ~~~s~~g~d~~v~v~d~~~~~~~~~~-~~h~~~V-----------------~~v~~~~~~~~l~s~s~Dg----------  143 (332)
                      +++.    ++.|++||+.+++..... .++...|                 .++.|+|||++|++++.|.          
T Consensus       125 a~~~----~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~  200 (719)
T 1z68_A          125 AYVY----QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY  200 (719)
T ss_dssp             EEEE----TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred             EEEE----CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence            8875    679999999888765433 3444433                 4899999999999998763          


Q ss_pred             ------------------------cEEEEeCCCceEEEEEEe--------c--CceeEEEcCCCeEEEEEeC-----CEE
Q 020021          144 ------------------------TVLLWDQRAEKCQGLLRV--------Q--GRPAAAYDDQGLVFAVAFG-----GYI  184 (332)
Q Consensus       144 ------------------------~i~iWd~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~-----~~i  184 (332)
                                              +|++||+.+++....+..        .  ......+++++.++....+     ..|
T Consensus       201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l  280 (719)
T 1z68_A          201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL  280 (719)
T ss_dssp             CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred             cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence                                    788999987764200111        1  1234567788776655432     258


Q ss_pred             EEEE----CccCCCCCeeEEEecCCCCCce-----eEEEcCCCCEEEE--EcCCC--eEEEEEccCCeEeEEeeecCCCC
Q 020021          185 RMFD----ARKYEKGPFDIFSVGGDISDAN-----VVKFSNDGRLMLL--TTMEG--HIHVLDSFRGTLLSTYNVKPVSR  251 (332)
Q Consensus       185 ~vwd----~~~~~~~~~~~~~~~~~~~~v~-----~v~~s~dg~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~  251 (332)
                      .+||    ....+...+......++...+.     .+.|||||+.++.  +..+|  +|++||+..++. ..+.   .+.
T Consensus       281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt---~~~  356 (719)
T 1z68_A          281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQIT---SGK  356 (719)
T ss_dssp             EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECS---CSS
T ss_pred             EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eecc---cCc
Confidence            8888    5443221111000012333344     6899999996544  44555  677788766652 2222   122


Q ss_pred             CcceEEEECCCCCEEEEEcCC-----CcEEEEECCC--Cc-eEEEecC----CCCCCceEEeCCCeeEEEe-ccc----e
Q 020021          252 NSTLEASFSPEGMFVISGSGD-----GSVYAWSVRS--GK-EVASWMS----FDTEPPVIKWTPGSLMFVT-GSS----E  314 (332)
Q Consensus       252 ~~~~~v~~spdg~~l~sgs~D-----g~i~vWd~~~--~~-~~~~~~~----~~~~v~~l~~sp~~~~l~t-~~~----d  314 (332)
                      ..+..+.++ |++.|+..+.+     +..++|.+..  +. ....+..    +...+..+.|+||++.++. .+.    .
T Consensus       357 ~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~  435 (719)
T 1z68_A          357 WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPI  435 (719)
T ss_dssp             SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCE
T ss_pred             eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCe
Confidence            345566666 77777766654     8899998754  32 1233332    5556778999999986664 332    2


Q ss_pred             EEEeccc
Q 020021          315 LSFWIPD  321 (332)
Q Consensus       315 ~~~w~~~  321 (332)
                      +.+|+..
T Consensus       436 ~~l~d~~  442 (719)
T 1z68_A          436 STLHDGR  442 (719)
T ss_dssp             EEEECSS
T ss_pred             EEEEECC
Confidence            5666553

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=1.9e-19  Score=172.85  Aligned_cols=229  Identities=11%  Similarity=0.034  Sum_probs=162.7

Q ss_pred             ccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeeccc-ccEEEEEecCCCCeEEEeeC---CCcEEEEeCC
Q 020021           76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCFISGSL---DRTVLLWDQR  151 (332)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~-~~V~~v~~~~~~~~l~s~s~---Dg~i~iWd~~  151 (332)
                      ..+|..++|+++|+.+++++.  .|++++||++.+++..+ +..|. ..+..+.|+|| +.+++++.   +...++|.+.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~--~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGF--SEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEE--ETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEc--cCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence            456899999999999998763  27799999997766544 44454 68999999999 77777765   5666776543


Q ss_pred             C---ceEEEEEEecCceeEEEcC--CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC
Q 020021          152 A---EKCQGLLRVQGRPAAAYDD--QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM  226 (332)
Q Consensus       152 ~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~  226 (332)
                      .   +...............+++  ++.+++.+.++.+.+||+...+   ......  +..  ..++|||||+.+++++.
T Consensus        97 ~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~---~~~l~~--~~~--~~~~~spDG~~la~~~~  169 (582)
T 3o4h_A           97 TSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG---LRELAR--LPG--FGFVSDIRGDLIAGLGF  169 (582)
T ss_dssp             TTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE---EEEEEE--ESS--CEEEEEEETTEEEEEEE
T ss_pred             ccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc---EEEeec--CCC--ceEEECCCCCEEEEEEE
Confidence            2   2211111111222233444  4456666666667799986532   111111  111  78899999999998877


Q ss_pred             C----CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC--cEEEEECCCCceEEEecCCCCCCceEE
Q 020021          227 E----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--SVYAWSVRSGKEVASWMSFDTEPPVIK  300 (332)
Q Consensus       227 d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg--~i~vWd~~~~~~~~~~~~~~~~v~~l~  300 (332)
                      +    +.|++||+.+++.. .+.   .+...+...+|||||++|++++.|+  .|++||+.+++.. .+..|...+..++
T Consensus       170 ~~~~~~~i~~~d~~~g~~~-~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~  244 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGLR-VFD---SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR  244 (582)
T ss_dssp             EETTEEEEEEEETTTCCCE-EEC---CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred             cCCCCeEEEEEcCCCCCce-Eee---cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence            6    78999999888764 332   3445667899999999999888899  9999999988876 6667777777777


Q ss_pred             --------eCCCeeEEEeccce--EEEecc
Q 020021          301 --------WTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       301 --------~sp~~~~l~t~~~d--~~~w~~  320 (332)
                              |+|||.++++++.+  +++|..
T Consensus       245 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          245 PTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             hccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                    99999887877665  788876

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=1.5e-17  Score=148.32  Aligned_cols=250  Identities=11%  Similarity=0.148  Sum_probs=178.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCC------------------------CcEEEEEcCCCeeeEEeee-cccceeEEEEccCCC
Q 020021           35 GRISSMDFHKSSSYLVTASDD------------------------ESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPT   89 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D------------------------~tv~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~   89 (332)
                      +.+.+|+++|+|+++++.+.+                        ++|.+||..+++.+..+.. +-.....+++.+++.
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            569999999999999998888                        4799999999988766642 224577899999988


Q ss_pred             EEEEecCCCCCceeEEEEccCCc-eEEEe---------ecccccEEEEEecC-CCCeEEEee-CCCcEEEEeCCCceEEE
Q 020021           90 TVIYSSKNGWDESLRLLSLHDNK-YLRYF---------KGHHDRVVSLSLCS-SKDCFISGS-LDRTVLLWDQRAEKCQG  157 (332)
Q Consensus        90 ~~~~~s~~g~d~~v~v~d~~~~~-~~~~~---------~~h~~~V~~v~~~~-~~~~l~s~s-~Dg~i~iWd~~~~~~~~  157 (332)
                      ..++..   .++.|++||..... .+..+         .++.....+++++| +++.+++.+ .++.|++||. .+....
T Consensus       104 l~v~d~---~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~  179 (329)
T 3fvz_A          104 YWVTDV---ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVT  179 (329)
T ss_dssp             EEEEET---TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEE
T ss_pred             EEEEEC---CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEE
Confidence            444433   26789999986542 45555         35666789999999 788888887 6899999994 444332


Q ss_pred             EEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEEcc
Q 020021          158 LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSF  236 (332)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~~~~~dg~i~i~d~~  236 (332)
                      .+...+.                 +       .....         ++......++++|+ |.++++...+++|++||..
T Consensus       180 ~~~~~g~-----------------~-------~~~~~---------~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          180 QWGEESS-----------------G-------SSPRP---------GQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             EECEECC-----------------S-------SSCCT---------TEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EeccCCC-----------------C-------CCCCC---------cccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            2211000                 0       00000         01123567999998 8888999999999999998


Q ss_pred             CCeEeEEeeecCCCCCcceEEEECC------CCCEEEEEcCCCcEEEEECCCCceEEEec---CCCCCCceEEeCCCeeE
Q 020021          237 RGTLLSTYNVKPVSRNSTLEASFSP------EGMFVISGSGDGSVYAWSVRSGKEVASWM---SFDTEPPVIKWTPGSLM  307 (332)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~sp------dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~  307 (332)
                      +|+.+..+... .....+..++|+|      +|+.+++.+.+..|++||+.+++.+..+.   .+...+..|+++|+|.+
T Consensus       227 ~G~~~~~~~~~-~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~l  305 (329)
T 3fvz_A          227 TKEFVREIKHA-SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTV  305 (329)
T ss_dssp             TCCEEEEECCT-TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEE
T ss_pred             CCcEEEEEecc-ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCE
Confidence            88888776533 2335566889999      44433334445599999999999888773   45566789999999998


Q ss_pred             EEeccce--EEEecccc
Q 020021          308 FVTGSSE--LSFWIPDL  322 (332)
Q Consensus       308 l~t~~~d--~~~w~~~~  322 (332)
                      +++...+  +..|+++.
T Consensus       306 yvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          306 YIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEESSSCCEEEEEEEE
T ss_pred             EEEECCCCEEEEEeCCc
Confidence            8887665  66666543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=1.2e-17  Score=162.55  Aligned_cols=288  Identities=12%  Similarity=0.059  Sum_probs=190.0

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEE--eCCCcEEEEEcCCCeeeEEeeeccccee---------EEEEc--cCCCE-EEEe
Q 020021           29 SFRDYNGRISSMDFHKSSSYLVTA--SDDESIRLYDVTAATCLKTINSKKYGVD---------LVCFT--SHPTT-VIYS   94 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l~tg--s~D~tv~iwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-~~~~   94 (332)
                      .+.+|...|..++|++++-++++.  +.|++.+||....+...+.+..+...+.         ...++  |+++. ++++
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            356789999999999887677777  6689999999654444555655554444         45455  89998 7776


Q ss_pred             cCCCCCceeEEEEcc--CCceEEEeec-----ccccEEEEEecCCCCeEEEeeCC----------CcEEEEeCCC-----
Q 020021           95 SKNGWDESLRLLSLH--DNKYLRYFKG-----HHDRVVSLSLCSSKDCFISGSLD----------RTVLLWDQRA-----  152 (332)
Q Consensus        95 s~~g~d~~v~v~d~~--~~~~~~~~~~-----h~~~V~~v~~~~~~~~l~s~s~D----------g~i~iWd~~~-----  152 (332)
                      +..  +..|.++++.  .......+..     |...+..++|+|||+.|++++.|          .+|.+||+.+     
T Consensus        98 ~~~--~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           98 HFG--DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             BTT--TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             ECC--CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            532  4556666665  2033455655     77889999999999999999887          5899999987     


Q ss_pred             -ceEEEEE-EecC-ceeEEEcCCCeEEE-EEeC--------CEEEEEECc-cCCCCCeeEEEecCCCCCceeEEEcCCCC
Q 020021          153 -EKCQGLL-RVQG-RPAAAYDDQGLVFA-VAFG--------GYIRMFDAR-KYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (332)
Q Consensus       153 -~~~~~~~-~~~~-~~~~~~~~~~~~~~-~~~~--------~~i~vwd~~-~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  219 (332)
                       +...... .... .....+++++..++ ++.+        ..|.+||+. .........+. .++...+..+.|||||+
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-~~~~~~~~~~~~spdg~  254 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-GGPEEAIAQAEWAPDGS  254 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-EETTBCEEEEEECTTSC
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-CCCCceEcceEECCCCe
Confidence             5543322 1111 22356788886554 4434        379999986 32100111111 12235678899999999


Q ss_pred             EEEEEcCCC--eEEEEEccCCeEeEEeeecCCCCC-----cceEEEECCCCCEEEEEcCCCcEEEE--ECCCCceEEEec
Q 020021          220 LMLLTTMEG--HIHVLDSFRGTLLSTYNVKPVSRN-----STLEASFSPEGMFVISGSGDGSVYAW--SVRSGKEVASWM  290 (332)
Q Consensus       220 ~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~v~~spdg~~l~sgs~Dg~i~vW--d~~~~~~~~~~~  290 (332)
                      +++++..++  .|++||..+++.............     .+..++|+|+++++++++. +.++||  |+.+++ +..+.
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~  332 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA  332 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence            888888888  677777766665432221100000     1346899999999999999 999999  555444 67777


Q ss_pred             CCCCCCceE-EeCCCeeEEEeccce--EEEeccc
Q 020021          291 SFDTEPPVI-KWTPGSLMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       291 ~~~~~v~~l-~~sp~~~~l~t~~~d--~~~w~~~  321 (332)
                      .+...+..+ +++++...+++++.+  ..+|.++
T Consensus       333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence            776666666 666555566655543  5566554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.80  E-value=2.3e-18  Score=159.52  Aligned_cols=200  Identities=13%  Similarity=0.076  Sum_probs=139.6

Q ss_pred             cCCCcEEEEEECCCCCEEE----EEeCCCcEEEEEcCCC--------ee---eEEeeecccceeEEEEccC-CCEEEEec
Q 020021           32 DYNGRISSMDFHKSSSYLV----TASDDESIRLYDVTAA--------TC---LKTINSKKYGVDLVCFTSH-PTTVIYSS   95 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~----tgs~D~tv~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~~~~~s   95 (332)
                      .|.+.|.+++|+|+|++|+    +|+.|++|+|||+.++        +.   +..+.+|...|..++|+|+ +..+++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            4677899999999999999    8999999999998654        22   3455668889999999998 56677665


Q ss_pred             CCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec---------Ccee
Q 020021           96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---------GRPA  166 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~---------~~~~  166 (332)
                      .   |++|++||+.++..+....+|...|.+++|+|+|++|++|+.||+|++||.+ +.....+..+         ....
T Consensus       170 ~---Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~  245 (434)
T 2oit_A          170 A---DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLD  245 (434)
T ss_dssp             T---TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEE
T ss_pred             C---CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEE
Confidence            4   8899999999987777778899999999999999999999999999999998 4444333222         1123


Q ss_pred             EEEcCCCeEEEEEe--CC------EEEEEECccCCCC-CeeEEEe-------cCCCCCceeEEEcCCCCEEEE-EcCCCe
Q 020021          167 AAYDDQGLVFAVAF--GG------YIRMFDARKYEKG-PFDIFSV-------GGDISDANVVKFSNDGRLMLL-TTMEGH  229 (332)
Q Consensus       167 ~~~~~~~~~~~~~~--~~------~i~vwd~~~~~~~-~~~~~~~-------~~~~~~v~~v~~s~dg~~l~~-~~~dg~  229 (332)
                      ..+.++..++++..  +|      .+++|+++..... +......       .+.......+..-+|.+++++ ++....
T Consensus       246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~d  325 (434)
T 2oit_A          246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTE  325 (434)
T ss_dssp             EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSB
T ss_pred             EEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCc
Confidence            45555665554332  32      4899999864321 2221111       112222223333366665554 455566


Q ss_pred             EEEEEc
Q 020021          230 IHVLDS  235 (332)
Q Consensus       230 i~i~d~  235 (332)
                      |.++..
T Consensus       326 v~vl~~  331 (434)
T 2oit_A          326 VSILAR  331 (434)
T ss_dssp             CEEEEE
T ss_pred             eeEEEe
Confidence            777764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=2.8e-16  Score=136.78  Aligned_cols=242  Identities=9%  Similarity=0.136  Sum_probs=172.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee------cccceeEEEEc-cCCCEEEEecCCCCCceeE
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS------KKYGVDLVCFT-SHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~~~~~s~~g~d~~v~  104 (332)
                      +|-..+.+|+++++|+++++...++.|.+||.. ++.+..+..      +...+..+++. +++ .++.+.. +.++.|+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~-~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTER-SPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEEC-GGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcC-CCCCEEE
Confidence            455678999999999999999999999999987 566655532      22346778884 444 4444431 1257899


Q ss_pred             EEEccCCceEEEee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCE
Q 020021          105 LLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGY  183 (332)
Q Consensus       105 v~d~~~~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (332)
                      +|| .+++.+..+. .+...+.++++.++++.+++...++.|.+||... +....+..                      
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~----------------------  159 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGC----------------------  159 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEEC----------------------
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCC----------------------
Confidence            999 5666666664 3456789999999999888888889999998643 22111100                      


Q ss_pred             EEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCC
Q 020021          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (332)
Q Consensus       184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg  263 (332)
                                         .........++++|+|+++++...++.|++||. .++.+..+... .....+..++++|+|
T Consensus       160 -------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~-g~~~~p~~i~~d~~G  218 (286)
T 1q7f_A          160 -------------------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGE-GITNYPIGVGINSNG  218 (286)
T ss_dssp             -------------------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCT-TTSCSEEEEEECTTC
T ss_pred             -------------------CCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccC-CccCCCcEEEECCCC
Confidence                               011123567899999999888888999999997 45555554321 122456789999999


Q ss_pred             CEEEEEcCCC-cEEEEECCCCceEEEecCCCC--CCceEEeCCCeeEEEeccc-eEEEecccc
Q 020021          264 MFVISGSGDG-SVYAWSVRSGKEVASWMSFDT--EPPVIKWTPGSLMFVTGSS-ELSFWIPDL  322 (332)
Q Consensus       264 ~~l~sgs~Dg-~i~vWd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~l~t~~~-d~~~w~~~~  322 (332)
                      +++++...++ .|++||. +++.+..+..+..  .+..++++|+++++++... .+++|.+..
T Consensus       219 ~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          219 EILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             CEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             CEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence            9999988886 9999995 5677776655443  3568999999998888432 388887643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.80  E-value=5.8e-17  Score=146.57  Aligned_cols=273  Identities=6%  Similarity=0.004  Sum_probs=184.1

Q ss_pred             CCCCEEEEEe------CCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecC-------CCCCceeEEEEccC
Q 020021           44 KSSSYLVTAS------DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-------NGWDESLRLLSLHD  110 (332)
Q Consensus        44 ~dg~~l~tgs------~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~-------~g~d~~v~v~d~~~  110 (332)
                      ++++++....      .|++|.+||..+++.+.++..+..+  .++|+|+++.++.+..       +..+++|.+||..+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            3555554432      4789999999999998888766544  7899999999888752       11367899999999


Q ss_pred             CceEEEeecc------cccEEEEEecCCCCeEEEeeC--CCcEEEEeCCCceEEEE-EEecCceeEEEcCC--CeEEEEE
Q 020021          111 NKYLRYFKGH------HDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGL-LRVQGRPAAAYDDQ--GLVFAVA  179 (332)
Q Consensus       111 ~~~~~~~~~h------~~~V~~v~~~~~~~~l~s~s~--Dg~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~  179 (332)
                      .+.+..+..+      ......++++|||++|+.+..  +++|.+||.++++.... +...........+.  ..+++.+
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence            8887776532      234567899999999988864  68999999999887665 43333222223333  3566666


Q ss_pred             eCCEEEEEECccCCCCCee-EEE----ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe--EeEEeeecC----
Q 020021          180 FGGYIRMFDARKYEKGPFD-IFS----VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKP----  248 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~-~~~----~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~----  248 (332)
                      .||.+.+|+.....  ... ...    .... .....+.+++++..++..+.++.++++|.....  ....+....    
T Consensus       171 ~dg~~~~v~~~~~g--~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          171 GDGGLLTINLGEDG--KVASQSRSKQMFSVK-DDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK  247 (361)
T ss_dssp             TTSSEEEEEECTTS--SEEEEEECCCCSCTT-TSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred             CCCcEEEEEECCCC--cEeeeccccceEcCC-CCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence            78888888875321  111 100    0000 111234457888888888889999999986543  222222110    


Q ss_pred             -CC--CCcceEEEECCCCCEEEEEcC-----------CCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc-c
Q 020021          249 -VS--RNSTLEASFSPEGMFVISGSG-----------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-S  313 (332)
Q Consensus       249 -~~--~~~~~~v~~spdg~~l~sgs~-----------Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~-~  313 (332)
                       ..  .....-++|+||++.++.+..           ..+|.+||+.+++.+.++..+.  +..++|+|||++|.++. .
T Consensus       248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~  325 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGG  325 (361)
T ss_dssp             HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSS
T ss_pred             ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCC
Confidence             00  011112789999888777643           3489999999999999887776  89999999998776654 4


Q ss_pred             eEEEeccccc
Q 020021          314 ELSFWIPDLS  323 (332)
Q Consensus       314 d~~~w~~~~~  323 (332)
                      .+.+|+....
T Consensus       326 ~v~v~D~~t~  335 (361)
T 2oiz_A          326 NVNVYDISQP  335 (361)
T ss_dssp             CEEEEECSSS
T ss_pred             eEEEEECCCC
Confidence            5999987654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=1.9e-16  Score=142.56  Aligned_cols=235  Identities=11%  Similarity=0.100  Sum_probs=150.3

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeEEee---ec-----------ccceeEEEEccCC
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTAS-DDESIRLYDVTAATCLKTIN---SK-----------KYGVDLVCFTSHP   88 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs-~D~tv~iwd~~~~~~~~~~~---~~-----------~~~v~~~~~~~~~   88 (332)
                      ++....+..+......+++  ++++|++++ .|+++.+|++.....+..+.   .+           ...+..++|+|++
T Consensus        89 ~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg  166 (361)
T 3scy_A           89 LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG  166 (361)
T ss_dssp             EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred             EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence            3444455556667778888  788777666 68899999997543332211   11           1124679999999


Q ss_pred             CEEEEecCCCCCceeEEEEccCCce------E-------EEeecccccEEEEEecCCCCeEEEee-CCCcEEEEeCCCce
Q 020021           89 TTVIYSSKNGWDESLRLLSLHDNKY------L-------RYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEK  154 (332)
Q Consensus        89 ~~~~~~s~~g~d~~v~v~d~~~~~~------~-------~~~~~h~~~V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~~~~  154 (332)
                      +.++++..  .++.+++|++.....      +       .....+......++|+|++++++.++ .++.|.+||+.++.
T Consensus       167 ~~l~~~~~--~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~  244 (361)
T 3scy_A          167 KYLLADDL--GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM  244 (361)
T ss_dssp             SEEEEEET--TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred             CEEEEEeC--CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence            98877653  267899999875431      1       11223445678999999999877666 68999999987654


Q ss_pred             EEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC--CCeEEE
Q 020021          155 CQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM--EGHIHV  232 (332)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~--dg~i~i  232 (332)
                      .........                                      ...+......++|||||++++++..  ++.|.+
T Consensus       245 ~~~~~~~~~--------------------------------------~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v  286 (361)
T 3scy_A          245 LDEIQTVAA--------------------------------------DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI  286 (361)
T ss_dssp             EEEEEEEES--------------------------------------CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred             eEEeEEEec--------------------------------------CCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence            321111000                                      0001123467899999998866554  589999


Q ss_pred             EEcc--CCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc-CCCcEEEEEC--CCCceEEEe-cCCCCCCceEEeC
Q 020021          233 LDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVYAWSV--RSGKEVASW-MSFDTEPPVIKWT  302 (332)
Q Consensus       233 ~d~~--~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs-~Dg~i~vWd~--~~~~~~~~~-~~~~~~v~~l~~s  302 (332)
                      |++.  +++........ . ...+..++|+|||++|++++ .++.|.+|++  .+++..... ..+...+.||.|.
T Consensus       287 ~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          287 FKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEcCCCCcEEEeeEec-C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            9985  45532222211 1 24556899999999988887 6789999654  466544332 1233457788875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=1e-17  Score=151.93  Aligned_cols=262  Identities=10%  Similarity=0.027  Sum_probs=171.9

Q ss_pred             EEEEcCCCeeeEEeeecccceeE-----EEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCC
Q 020021           59 RLYDVTAATCLKTINSKKYGVDL-----VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK  133 (332)
Q Consensus        59 ~iwd~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~  133 (332)
                      ..+|..++..+..+..+......     .+|+|+++.+++.+...-...+.+||+.+++......+|...+..+.|+||+
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg   92 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD   92 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence            44577788887777766544443     6899999999888752213368888999988877777777766677899999


Q ss_pred             CeEEEeeCCCcEEEEeCCCceEEEEEEecCce----eEEEcCCCeEEEEE-----------------------eCCEEEE
Q 020021          134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP----AAAYDDQGLVFAVA-----------------------FGGYIRM  186 (332)
Q Consensus       134 ~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----------------------~~~~i~v  186 (332)
                      +.|+.++.++.+.+||+.+++.......+...    ....++++..+++.                       .+..|.+
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR  172 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence            99999999999999999988776555544321    12345666555432                       2257889


Q ss_pred             EECccCCCCCeeEEEecCCCCCceeEEEcC-CCCEEEEEcCC------CeEEEEEccCCeEeEEeeecCCCC-CcceEEE
Q 020021          187 FDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPVSR-NSTLEAS  258 (332)
Q Consensus       187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~-~~~~~v~  258 (332)
                      ||+...+   ...+.  .+...+..++||| ||+.++....+      ..|.++|...++.. .+.  .... ..+...+
T Consensus       173 ~d~~~g~---~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~--~~~~~~~~~~~~  244 (388)
T 3pe7_A          173 VDLKTGE---STVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVK--THAEGESCTHEF  244 (388)
T ss_dssp             EETTTCC---EEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESC--CCCTTEEEEEEE
T ss_pred             EECCCCc---eEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Eee--eCCCCcccccce
Confidence            9987542   22221  2223567889999 99988877653      37888887655432 221  1111 2455679


Q ss_pred             ECCCCCEEEEEcCC-C----cEEEEECCCCce--EEEecCCC---CCCceEEeCCCeeEEEec-----------cceEEE
Q 020021          259 FSPEGMFVISGSGD-G----SVYAWSVRSGKE--VASWMSFD---TEPPVIKWTPGSLMFVTG-----------SSELSF  317 (332)
Q Consensus       259 ~spdg~~l~sgs~D-g----~i~vWd~~~~~~--~~~~~~~~---~~v~~l~~sp~~~~l~t~-----------~~d~~~  317 (332)
                      |||||+.|+..+.+ +    .|++||+.+++.  +..+..+.   .....++|+|||+.++..           ..++.+
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~  324 (388)
T 3pe7_A          245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV  324 (388)
T ss_dssp             ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred             ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence            99999988665432 2    399999998874  22322210   012345799999877642           234777


Q ss_pred             ecccccccccc
Q 020021          318 WIPDLSKLGAY  328 (332)
Q Consensus       318 w~~~~~~~~~~  328 (332)
                      |+++..++.++
T Consensus       325 ~d~~~~~~~~l  335 (388)
T 3pe7_A          325 FNMKNGTQHRV  335 (388)
T ss_dssp             EETTTTEEEEE
T ss_pred             EeccCCceEEe
Confidence            87766555444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=4e-16  Score=139.37  Aligned_cols=263  Identities=8%  Similarity=0.048  Sum_probs=171.4

Q ss_pred             cEEEEEECCCCCEEEEEe---------CCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCC--CCceeE
Q 020021           36 RISSMDFHKSSSYLVTAS---------DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLR  104 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs---------~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g--~d~~v~  104 (332)
                      .+....+  ||++++...         .++.|.+||+.+++... +    ..+...+|+|+++.+++.+..+  ....+.
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            4667777  888886642         36789999999887543 3    3567789999999998876432  133578


Q ss_pred             EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCC---------------------------CcEEEEeCCCceEEE
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD---------------------------RTVLLWDQRAEKCQG  157 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~D---------------------------g~i~iWd~~~~~~~~  157 (332)
                      +||+.+++.......+ . +..+.|+||++.|+.++.+                           ..|.+||+.+++...
T Consensus        89 ~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~  166 (347)
T 2gop_A           89 VADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE  166 (347)
T ss_dssp             EEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred             EEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence            8888887765554444 3 9999999999998888743                           578999998887623


Q ss_pred             EEEecCceeEEEcCCCeEEEEEe-C------C-EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC--
Q 020021          158 LLRVQGRPAAAYDDQGLVFAVAF-G------G-YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME--  227 (332)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~-~------~-~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d--  227 (332)
                      .+..+......+++++ ++.++. +      . ..++|.+..   +....+..  + ..+.  .+||||+.++..+.+  
T Consensus       167 ~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~---~~~~~l~~--~-~~~~--~~spdg~~l~~~~~~~~  237 (347)
T 2gop_A          167 EFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED---GKEEKMFE--K-VSFY--AVDSDGERILLYGKPEK  237 (347)
T ss_dssp             EEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET---TEEEEEEE--E-ESEE--EEEECSSCEEEEECCSS
T ss_pred             eecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCC---CceEEecc--C-ccee--eECCCCCEEEEEEcccc
Confidence            3322233455677777 554443 2      1 345554431   22222211  1 2233  349999988877644  


Q ss_pred             ------CeEEEEEccCCeEeEEeeecCCCCCcceE-EEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEE
Q 020021          228 ------GHIHVLDSFRGTLLSTYNVKPVSRNSTLE-ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK  300 (332)
Q Consensus       228 ------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~-v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~  300 (332)
                            ..|++||  +++.....   ..+...+.. +.|+ |+ ++++++.|+.++|| +.+++. ..+..+...+..++
T Consensus       238 ~~~~~~~~l~~~d--~~~~~~l~---~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~  308 (347)
T 2gop_A          238 KYMSEHNKLYIYD--GKEVMGIL---DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFD  308 (347)
T ss_dssp             SCCCSSCEEEEEC--SSCEEESS---TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEE
T ss_pred             CCccccceEEEEC--CCceEecc---ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeee
Confidence                  4788888  55543221   223345555 7899 88 99999999999999 876554 44445566788999


Q ss_pred             eCCCeeEEEeccce---EEEecccccccccc
Q 020021          301 WTPGSLMFVTGSSE---LSFWIPDLSKLGAY  328 (332)
Q Consensus       301 ~sp~~~~l~t~~~d---~~~w~~~~~~~~~~  328 (332)
                      |+|  .++++++.+   ..+|.++ .++.++
T Consensus       309 ~s~--~~~~~~~~~~~~~~l~~~~-g~~~~l  336 (347)
T 2gop_A          309 VDE--IVVYLKETATRLRELFTWD-GEEKQL  336 (347)
T ss_dssp             ESS--SEEEEEECSSSCCEEEEES-SSEEEC
T ss_pred             eeC--cEEEEEcCCCChHHheEeC-CcEEEe
Confidence            999  455554433   4788776 444433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.77  E-value=3.1e-16  Score=139.44  Aligned_cols=267  Identities=12%  Similarity=0.186  Sum_probs=181.2

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      +..|.++.|++++..++..+.+++++.|   .++....+..+...+..++|.+++...++...   ++.|.+||.++++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---~~~i~~~d~~~~~~   78 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVF---EGNIFKINPETKEI   78 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETT---TCEEEEECTTTCCE
T ss_pred             ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECC---CCEEEEEeCCCCcE
Confidence            3457888999999888888999999999   35666666666666788899988874444432   67899999988876


Q ss_pred             EEEeecccccEEEEEecCCCCeEEEeeCC----CcEEEEeCCCceEEEEEEe--c--CceeEEEcCCCeEEEEEeC----
Q 020021          114 LRYFKGHHDRVVSLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLRV--Q--GRPAAAYDDQGLVFAVAFG----  181 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~~~~l~s~s~D----g~i~iWd~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~----  181 (332)
                      ......+...+.+++++++++.+++...+    +.|.+||..++.....+..  .  ......+++++.++.+...    
T Consensus        79 ~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~  158 (333)
T 2dg1_A           79 KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST  158 (333)
T ss_dssp             EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT
T ss_pred             EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccccc
Confidence            65554667889999999999988887776    7899999887765433221  1  1234566777776666543    


Q ss_pred             ---CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEE-EEEcCCCeEEEEEccC-CeEeEEee----ecCCCCC
Q 020021          182 ---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFR-GTLLSTYN----VKPVSRN  252 (332)
Q Consensus       182 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~~-~~~~~~~~----~~~~~~~  252 (332)
                         +.|..+|....   .+..+.  ......+.++++|||+.+ ++.+.++.|++||... +..+..+.    .......
T Consensus       159 ~~~~~l~~~~~~~~---~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~  233 (333)
T 2dg1_A          159 NPLGGVYYVSPDFR---TVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE  233 (333)
T ss_dssp             BCCEEEEEECTTSC---CEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSS
T ss_pred             CCCceEEEEeCCCC---EEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCC
Confidence               45555554321   222221  111246789999999854 5566789999999863 33222110    0000113


Q ss_pred             cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCC------CCceEEeCCCee-EEEecc
Q 020021          253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT------EPPVIKWTPGSL-MFVTGS  312 (332)
Q Consensus       253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~------~v~~l~~sp~~~-~l~t~~  312 (332)
                      .+..++++++|+++++...++.|++||. +++.+..+.....      .+..++|+||++ ++++..
T Consensus       234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          234 GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence            4567899999999888888899999998 5666666544332      588999999974 444443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.77  E-value=2.2e-15  Score=131.88  Aligned_cols=247  Identities=12%  Similarity=0.052  Sum_probs=168.6

Q ss_pred             ccceeEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~  102 (332)
                      ......+..+.....++.|+|+|+ +++++..++.|..||..++  ...+..+...+..+++.+++..+++...   ++.
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~---~~~   91 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHG---LRR   91 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETT---TTE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecC---CCe
Confidence            344556667777889999999998 7888999999999999887  5566656666788999999875554431   568


Q ss_pred             eEEEEccCCceEEEeecc----cccEEEEEecCCCCeEEEeeCCC-----------------cEEEEeCCCceEEEEEEe
Q 020021          103 LRLLSLHDNKYLRYFKGH----HDRVVSLSLCSSKDCFISGSLDR-----------------TVLLWDQRAEKCQGLLRV  161 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~~h----~~~V~~v~~~~~~~~l~s~s~Dg-----------------~i~iWd~~~~~~~~~~~~  161 (332)
                      |.+||.++++........    ...+..+++.|+|+.++|.+.+|                 .|..+|.. ++       
T Consensus        92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-------  163 (296)
T 3e5z_A           92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-------  163 (296)
T ss_dssp             EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-------
T ss_pred             EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-------
Confidence            999999887754433322    23456789999999888743222                 22222211 11       


Q ss_pred             cCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc-CCeE
Q 020021          162 QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTL  240 (332)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~-~~~~  240 (332)
                                            ++.             .  .......+.++++|||+.+++.+.++.|++||+. .+++
T Consensus       164 ----------------------~~~-------------~--~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~  206 (296)
T 3e5z_A          164 ----------------------LSA-------------P--IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGET  206 (296)
T ss_dssp             ----------------------EEE-------------E--ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCE
T ss_pred             ----------------------EEE-------------e--ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcC
Confidence                                  000             0  0112234678999999988777888999999986 5554


Q ss_pred             ---eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEe-CCCeeEEEeccce-E
Q 020021          241 ---LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW-TPGSLMFVTGSSE-L  315 (332)
Q Consensus       241 ---~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~-sp~~~~l~t~~~d-~  315 (332)
                         ...+   ......+..++++++|+++++.  ++.|++||.. ++.+..+..+.. +++++| +|+++.|..++.+ +
T Consensus       207 ~~~~~~~---~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l  279 (296)
T 3e5z_A          207 EYQGVHF---TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEF  279 (296)
T ss_dssp             EEEEEEE---CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEE
T ss_pred             cCCCeEe---eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeE
Confidence               2222   1233445578999999987776  7889999985 777777776666 899999 6888755554443 4


Q ss_pred             EEeccccccccc
Q 020021          316 SFWIPDLSKLGA  327 (332)
Q Consensus       316 ~~w~~~~~~~~~  327 (332)
                      -..++...+|+.
T Consensus       280 ~~~~~~~~~~~~  291 (296)
T 3e5z_A          280 WSIETNVRGLEH  291 (296)
T ss_dssp             EEEECSCCBCCC
T ss_pred             EEEEcccccccc
Confidence            445566655543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=2.3e-15  Score=134.13  Aligned_cols=259  Identities=9%  Similarity=0.106  Sum_probs=179.5

Q ss_pred             CCCcEEEEEcCCCeeeEEeeec------ccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEE
Q 020021           54 DDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSL  127 (332)
Q Consensus        54 ~D~tv~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v  127 (332)
                      .+++|.+||.++++....+...      ......+++  ++..++.+..  .++.|.++|.++++.+..+.. ......+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~--~~~~v~viD~~t~~~~~~i~~-~~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVN--NSHVIFAIDINTFKEVGRITG-FTSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEG--GGTEEEEEETTTCCEEEEEEC-CSSEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEc--CCCEEEEEECcccEEEEEcCC-CCCCcEE
Confidence            4899999999999877654211      112344555  3445555443  267899999999998888753 4668899


Q ss_pred             EecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC------ce-eEEEcCCCeEEEEEe--CCEEEEEECccCCCCCee
Q 020021          128 SLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG------RP-AAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFD  198 (332)
Q Consensus       128 ~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~--~~~i~vwd~~~~~~~~~~  198 (332)
                      +++++++..++...++.|.+||.++++....+....      .+ ...+ .++.++.+..  ++.|.++|..+.+.  ..
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~--~~  166 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKV--VD  166 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEE--EE
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeE--EE
Confidence            998888666666689999999999988776666543      33 2333 4555555553  78999999875421  12


Q ss_pred             EEEecCCCCCceeEEEcCCCCEEEEEcCC----------CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021          199 IFSVGGDISDANVVKFSNDGRLMLLTTME----------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (332)
Q Consensus       199 ~~~~~~~~~~v~~v~~s~dg~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s  268 (332)
                      .....   .....++++|+|++++++..+          +.|.++|..++++...+....  ......++|+||+++|+.
T Consensus       167 ~i~~g---~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          167 ELTIG---IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             EEECS---SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEE
T ss_pred             EEEcC---CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEE
Confidence            22222   234678899999988877655          799999999998877665322  135668999999999988


Q ss_pred             EcCCCcEEEEECCCCceEEE-e-cCCCCCCceEEeCC-CeeEEEec----c--ceEEEeccccccccc
Q 020021          269 GSGDGSVYAWSVRSGKEVAS-W-MSFDTEPPVIKWTP-GSLMFVTG----S--SELSFWIPDLSKLGA  327 (332)
Q Consensus       269 gs~Dg~i~vWd~~~~~~~~~-~-~~~~~~v~~l~~sp-~~~~l~t~----~--~d~~~w~~~~~~~~~  327 (332)
                      +..  .|.+||..+++.... + ......+..++++| +++++++.    .  ..+.+|+++.+.+..
T Consensus       242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~  307 (328)
T 3dsm_A          242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDE  307 (328)
T ss_dssp             ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEE
T ss_pred             Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEE
Confidence            765  899999988775321 1 11134578899999 67777776    3  348888887544443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=3.8e-16  Score=153.10  Aligned_cols=249  Identities=12%  Similarity=0.046  Sum_probs=162.2

Q ss_pred             cCCCcEEEEEECCCCCEEE-----EEeCCCcEEEEEcCCCeee-EEeeecccceeEEEEccCCCEEEEecCCC-------
Q 020021           32 DYNGRISSMDFHKSSSYLV-----TASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNG-------   98 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~-----tgs~D~tv~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~g-------   98 (332)
                      +|+..+.+++|||||++||     +|+.+.+|++||+.+++.+ ... ........++|+|+++.+++++...       
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC-BSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc-cCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence            5666899999999999998     6666789999999998865 211 1111125689999999998886522       


Q ss_pred             ---CCceeEEEEccCCc----eEEEeecccccEEEEEecCCCCeEEEeeCCC----cEEEEeCCCceEEEEEEec-Ccee
Q 020021           99 ---WDESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCSSKDCFISGSLDR----TVLLWDQRAEKCQGLLRVQ-GRPA  166 (332)
Q Consensus        99 ---~d~~v~v~d~~~~~----~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg----~i~iWd~~~~~~~~~~~~~-~~~~  166 (332)
                         ....|++|++.+++    .+.....|...+..+.|+|||++|+..+.++    .|.+||..++......... ....
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~  276 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYE  276 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEE
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEE
Confidence               12349999998876    3333345667889999999999998888776    6777776554433322211 1222


Q ss_pred             EEEcCCCeEEEEEe----CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc-CCeEe
Q 020021          167 AAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLL  241 (332)
Q Consensus       167 ~~~~~~~~~~~~~~----~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~-~~~~~  241 (332)
                      ....++. ++..+.    ++.|.+||+..........+........+..++++ ++.++++...++..++|... .+..+
T Consensus       277 ~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~  354 (695)
T 2bkl_A          277 VHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV  354 (695)
T ss_dssp             EEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred             EEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee
Confidence            2333333 444443    37899999865431111222211112345667887 77888888999988777654 35544


Q ss_pred             EEeeecCCCCCcceEEEECCCCCEEE----EEcCCCcEEEEECCCCce
Q 020021          242 STYNVKPVSRNSTLEASFSPEGMFVI----SGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~spdg~~l~----sgs~Dg~i~vWd~~~~~~  285 (332)
                      ..+...  ....+..++++||++.++    +....++|++||+.+++.
T Consensus       355 ~~l~~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          355 RTVQLP--GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EECCCS--SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEecCC--CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            444321  134555678899998777    444567999999988763

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=3.7e-15  Score=146.38  Aligned_cols=249  Identities=11%  Similarity=0.076  Sum_probs=164.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC-------
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDE-----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-------   99 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~-----tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~-------   99 (332)
                      +|+..+.+++|||||++||.++.++     +|++||+.+++.+.....+ ..+..++|+|+++.+++++..+.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3556789999999999998776554     8999999999887643222 23567899999999998875322       


Q ss_pred             ------CceeEEEEccCCce--EEEee--cccccEEEEEecCCCCeEEEeeC-----CCcEEEEeCCC------ce-EEE
Q 020021          100 ------DESLRLLSLHDNKY--LRYFK--GHHDRVVSLSLCSSKDCFISGSL-----DRTVLLWDQRA------EK-CQG  157 (332)
Q Consensus       100 ------d~~v~v~d~~~~~~--~~~~~--~h~~~V~~v~~~~~~~~l~s~s~-----Dg~i~iWd~~~------~~-~~~  157 (332)
                            ...|++|++.+++.  ...+.  .|...+..+.|+|||++|+..+.     +..|.+||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                  23499999988762  23333  35666889999999998887765     56899999875      32 222


Q ss_pred             EEEecC-ceeEEEcCCC-eEEEEEeC----CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC--e
Q 020021          158 LLRVQG-RPAAAYDDQG-LVFAVAFG----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG--H  229 (332)
Q Consensus       158 ~~~~~~-~~~~~~~~~~-~~~~~~~~----~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg--~  229 (332)
                      .+.... .....+++++ .++..+..    ..|.+||+..........+........+..+++++++.++++...++  .
T Consensus       281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            232211 1112334433 44444432    37999998654211112221111112466788888888888888888  4


Q ss_pred             EEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE----cCCCcEEEEECCCCc
Q 020021          230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG----SGDGSVYAWSVRSGK  284 (332)
Q Consensus       230 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg----s~Dg~i~vWd~~~~~  284 (332)
                      |++||+.+|+.+..+..   +...+..++++|++..++..    ...+++++||+.+++
T Consensus       361 l~~~~~~~g~~~~~l~~---~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          361 LQLHDLATGALLKIFPL---EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTCCEEEEECC---CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCCCEEEecCC---CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            66778767776665542   34566678899999766532    345799999998876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.72  E-value=3.5e-13  Score=117.18  Aligned_cols=277  Identities=7%  Similarity=0.058  Sum_probs=188.2

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEE-eeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      +..+...+.+|.++++|+++++...++.|.+||.. ++.... +......+..+++.+++...+....   ++.+..||.
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~   85 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENA---ANKIGRITK   85 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETT---TTEEEEECT
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCC---CCeEEEECC
Confidence            45566789999999999988887778999999988 544321 1223445778888888765544322   467888887


Q ss_pred             cCCce-EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec----CceeEEEcCCCeEEEEEe-CC
Q 020021          109 HDNKY-LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF-GG  182 (332)
Q Consensus       109 ~~~~~-~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~  182 (332)
                      + ++. ...+..+...+.++.+.++++.+++...++.|..||. +++... +...    .......++++.++.+.. ++
T Consensus        86 ~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  162 (299)
T 2z2n_A           86 K-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFITLGSDNALWFTENQNN  162 (299)
T ss_dssp             T-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             C-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence            6 332 1222234567899999999998888888899999998 444332 2211    123445666776666554 57


Q ss_pred             EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      .|..||. .   +.+..+........+..++++++|+++++...++.|.+||. +++... +... .....+..++++|+
T Consensus       163 ~i~~~~~-~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~-~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          163 AIGRITE-S---GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP-TPNARPHAITAGAG  235 (299)
T ss_dssp             EEEEECT-T---CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS-STTCCEEEEEECST
T ss_pred             EEEEEcC-C---CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC-CCCCCceeEEECCC
Confidence            8999987 3   22333322223345678999999998888888899999998 666432 3221 23356678999999


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEe--cCCCCCCceEEeCCCeeEEEecc-ceEEEeccccc
Q 020021          263 GMFVISGSGDGSVYAWSVRSGKEVASW--MSFDTEPPVIKWTPGSLMFVTGS-SELSFWIPDLS  323 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~l~t~~-~d~~~w~~~~~  323 (332)
                      |+.+++...++.|.+||. +++. ..+  ..+...+.++++ ++++++++.. ..+..++++..
T Consensus       236 g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~  296 (299)
T 2z2n_A          236 IDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKD  296 (299)
T ss_dssp             TCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred             CCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence            998887767889999998 4543 333  334456788999 9998887754 44666776554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.71  E-value=5.3e-16  Score=140.71  Aligned_cols=259  Identities=10%  Similarity=0.049  Sum_probs=161.8

Q ss_pred             EEEcCCCeeeEEeeecccc-----eeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC
Q 020021           60 LYDVTAATCLKTINSKKYG-----VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD  134 (332)
Q Consensus        60 iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~  134 (332)
                      ..|..++..+..+..+...     +..++|+|+++.+++....+.+..+.+||+.+++......++......+.|+|||+
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~   93 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER   93 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence            4477777777666544322     56678999999988876543355788899988876554443333233478999999


Q ss_pred             eEEEeeCCCcEEEEeCCCceEEEEEEecCce--e---E----------------EEcCCCeEEEE------EeCCEEEEE
Q 020021          135 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--A---A----------------AYDDQGLVFAV------AFGGYIRMF  187 (332)
Q Consensus       135 ~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~---~----------------~~~~~~~~~~~------~~~~~i~vw  187 (332)
                      .|+.++.++.|.+||+.+++.......+...  .   .                .+.+++..+..      ..+..|.+|
T Consensus        94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A           94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence            9999999999999999887765544432211  0   0                11222221111      234578889


Q ss_pred             ECccCCCCCeeEEEecCCCCCceeEEEcC-CCCEEEEEcCC------CeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021          188 DARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (332)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s  260 (332)
                      |+...+   .....  .....+..+.|+| ||+.++..+.+      ..|.+||...++......  ......+..++|+
T Consensus       174 d~~~g~---~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~~s  246 (396)
T 3c5m_A          174 DIETGE---LEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE--HAEGESCTHEFWI  246 (396)
T ss_dssp             ETTTCC---EEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC--CCTTEEEEEEEEC
T ss_pred             ECCCCc---EEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec--cCCCccccceEEC
Confidence            986532   22111  1234567889999 88877665543      468889987654322111  0012245568999


Q ss_pred             CCCCEEEEEcCC-----CcEEEEECCCCceEEEecCCCCCCceEEeCC-CeeEEEecc------------------ceEE
Q 020021          261 PEGMFVISGSGD-----GSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGS------------------SELS  316 (332)
Q Consensus       261 pdg~~l~sgs~D-----g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~t~~------------------~d~~  316 (332)
                      |||++|+.++.+     +.|++||+.+++... +..... .. +.|+| |+++++.++                  .++.
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~  323 (396)
T 3c5m_A          247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLY  323 (396)
T ss_dssp             TTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEE
T ss_pred             CCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEE
Confidence            999988877654     459999998876433 222222 22 88999 999887643                  3477


Q ss_pred             Eecccccccccc
Q 020021          317 FWIPDLSKLGAY  328 (332)
Q Consensus       317 ~w~~~~~~~~~~  328 (332)
                      +|+++..++..+
T Consensus       324 ~~d~~~~~~~~l  335 (396)
T 3c5m_A          324 VLNTKAKSAQKL  335 (396)
T ss_dssp             EEETTTTBCCEE
T ss_pred             EEecccCceEEc
Confidence            777655544433

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=2.8e-15  Score=147.94  Aligned_cols=274  Identities=8%  Similarity=0.052  Sum_probs=168.1

Q ss_pred             ceeEeccCCCc-----EEEEEECCCCCEEEEEeCC---------CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEE
Q 020021           26 VGMSFRDYNGR-----ISSMDFHKSSSYLVTASDD---------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV   91 (332)
Q Consensus        26 ~~~~l~~h~~~-----I~~i~~s~dg~~l~tgs~D---------~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   91 (332)
                      ....+.+|+..     ...++|||||++|+.++.|         +.+.+||+.++++.. +..+...+...+|+|+++.+
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~l  126 (740)
T 4a5s_A           48 SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKL  126 (740)
T ss_dssp             EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCE
T ss_pred             eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEE
Confidence            34456777643     2347889999999999987         455699999998654 55556678899999999999


Q ss_pred             EEecCCCCCceeEEEEccCCceEEE-eecccccE-----------------EEEEecCCCCeEEEeeCCC----------
Q 020021           92 IYSSKNGWDESLRLLSLHDNKYLRY-FKGHHDRV-----------------VSLSLCSSKDCFISGSLDR----------  143 (332)
Q Consensus        92 ~~~s~~g~d~~v~v~d~~~~~~~~~-~~~h~~~V-----------------~~v~~~~~~~~l~s~s~Dg----------  143 (332)
                      ++++    ++.|.+||+.+++..+. ..++...+                 .++.|||||+.|+.++.|.          
T Consensus       127 a~~~----~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~  202 (740)
T 4a5s_A          127 AYVW----NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF  202 (740)
T ss_dssp             EEEE----TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred             EEEE----CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEe
Confidence            8875    67899999988775542 33444433                 2488999999999886443          


Q ss_pred             --------------------------cEEEEeCCC---c---eEEEEEEe------c--CceeEEEcCCCeEEEEE-e-C
Q 020021          144 --------------------------TVLLWDQRA---E---KCQGLLRV------Q--GRPAAAYDDQGLVFAVA-F-G  181 (332)
Q Consensus       144 --------------------------~i~iWd~~~---~---~~~~~~~~------~--~~~~~~~~~~~~~~~~~-~-~  181 (332)
                                                +|.+||+.+   +   +... +..      .  ......+++++.+++.. . +
T Consensus       203 ~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~  281 (740)
T 4a5s_A          203 YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ-ITAPASMLIGDHYLCDVTWATQERISLQWLRRI  281 (740)
T ss_dssp             CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE-ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS
T ss_pred             ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE-ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC
Confidence                                      478888887   6   3222 211      1  12234667777644433 2 1


Q ss_pred             ---CEEEEEECccCC----CC-CeeEEEecCCCCC-----ceeEEEcCCCCEEE-EEcC-C--CeEEEEEccCCeEeEEe
Q 020021          182 ---GYIRMFDARKYE----KG-PFDIFSVGGDISD-----ANVVKFSNDGRLML-LTTM-E--GHIHVLDSFRGTLLSTY  244 (332)
Q Consensus       182 ---~~i~vwd~~~~~----~~-~~~~~~~~~~~~~-----v~~v~~s~dg~~l~-~~~~-d--g~i~i~d~~~~~~~~~~  244 (332)
                         ..|.+||+...+    .. ...... ..+..-     .....|||||+.++ ..+. +  .+|++||...++... +
T Consensus       282 ~~~~~i~~~d~~tg~~~~~~~~~~~l~~-~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-l  359 (740)
T 4a5s_A          282 QNYSVMDICDYDESSGRWNCLVARQHIE-MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-I  359 (740)
T ss_dssp             TTEEEEEEEEEETTTTEEEECGGGCEEE-ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-S
T ss_pred             CCEEEEEEEECCCCccccceeEEEEeee-ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-c
Confidence               379999987643    00 111111 122222     23678999999876 5543 3  478889987665432 2


Q ss_pred             eecCCCCCcceEEEECCCCCEEE-EEcC--C--C--cEEEEECCCCceEEEecC----CCCCCceEEeCCCeeEEEec
Q 020021          245 NVKPVSRNSTLEASFSPEGMFVI-SGSG--D--G--SVYAWSVRSGKEVASWMS----FDTEPPVIKWTPGSLMFVTG  311 (332)
Q Consensus       245 ~~~~~~~~~~~~v~~spdg~~l~-sgs~--D--g--~i~vWd~~~~~~~~~~~~----~~~~v~~l~~sp~~~~l~t~  311 (332)
                      .  .. ...+..+ +++|++.|+ +++.  +  +  .|+..++..++....+..    ........+|||++++++..
T Consensus       360 T--~g-~~~v~~~-~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~  433 (740)
T 4a5s_A          360 T--KG-TWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLR  433 (740)
T ss_dssp             C--CS-SSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEE
T ss_pred             c--cC-CEEEEEE-EEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEE
Confidence            1  11 2223333 224565544 4443  1  2  455555544332223332    23456789999999866543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.70  E-value=2.5e-14  Score=124.33  Aligned_cols=218  Identities=10%  Similarity=0.093  Sum_probs=166.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc-cceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeeccc-c
Q 020021           45 SSSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-D  122 (332)
Q Consensus        45 dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~-~  122 (332)
                      .+++|++++.|+.|.+||.++|+.+.++..+. ..+..+.+.|+++.++ +.    ++.|..+|. +++.+..+..+. .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~----~~~V~~~d~-~G~~~W~~~~~~~~   77 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SY----SKGAKMITR-DGRELWNIAAPAGC   77 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-EC----BSEEEEECT-TSCEEEEEECCTTC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eC----CCCEEEECC-CCCEEEEEcCCCCc
Confidence            46899999999999999999999999888765 4678889999998766 32    567999999 788888888653 5


Q ss_pred             cEEEEEecCCCCeEEEeeC-CCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEE
Q 020021          123 RVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFS  201 (332)
Q Consensus       123 ~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~  201 (332)
                      .+.++.+.++|+.+++.+. ++.+..+|. +++.+..+....                            ..        
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~----------------------------~~--------  120 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET----------------------------GI--------  120 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC----------------------------SC--------
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC----------------------------CC--------
Confidence            7889999999999999887 777777775 444333322110                            00        


Q ss_pred             ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021          202 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       202 ~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                       ..+......+++.++|.++++...++.|.+||.. |+.+-++...    .....+.+.|+|+.+++++.++.|..+|..
T Consensus       121 -~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          121 -ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             -SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             -CcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence             0011123456789999999999999999999987 9988777642    234467888999999999888899999999


Q ss_pred             CCceEEEecCCC------CCCceEEeCCCeeEEEec
Q 020021          282 SGKEVASWMSFD------TEPPVIKWTPGSLMFVTG  311 (332)
Q Consensus       282 ~~~~~~~~~~~~------~~v~~l~~sp~~~~l~t~  311 (332)
                      +++.+..+....      ..+..+...++|+.+++.
T Consensus       195 tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          195 SNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             TCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            999988875432      114567778899888886

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.69  E-value=1e-14  Score=131.79  Aligned_cols=211  Identities=9%  Similarity=0.050  Sum_probs=139.2

Q ss_pred             EEEEEECCCCCE--EEEEe-------------CCCcEEEEEcC-CCeeeEEeee----cccceeEEEEccCCCEEEEecC
Q 020021           37 ISSMDFHKSSSY--LVTAS-------------DDESIRLYDVT-AATCLKTINS----KKYGVDLVCFTSHPTTVIYSSK   96 (332)
Q Consensus        37 I~~i~~s~dg~~--l~tgs-------------~D~tv~iwd~~-~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~s~   96 (332)
                      +..++|+|||++  +++++             .|+++++|++. +++....+..    +...+..++|+|+++.++++..
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence            456889999984  55653             69999999997 4665544432    3446788999999998876643


Q ss_pred             CCCCceeEEEEcc-CCceE--EEee--cccccEEEEEecCCCCeEEEeeC-CCcEEEEeCC--CceEEEEEE-ecCceeE
Q 020021           97 NGWDESLRLLSLH-DNKYL--RYFK--GHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQR--AEKCQGLLR-VQGRPAA  167 (332)
Q Consensus        97 ~g~d~~v~v~d~~-~~~~~--~~~~--~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~--~~~~~~~~~-~~~~~~~  167 (332)
                       + ++.|++||+. +++..  ..+.  .|...+..++|+|+|++++.++. +++|.+|++.  +++...... ....   
T Consensus       165 -~-~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~---  239 (365)
T 1jof_A          165 -T-ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI---  239 (365)
T ss_dssp             -T-TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS---
T ss_pred             -C-CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC---
Confidence             2 5789999998 66643  2333  24567899999999998877764 7899999764  343221000 0000   


Q ss_pred             EEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCC------CceeEE-EcCCCCEEEEEcCC-C-----eEEEEE
Q 020021          168 AYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS------DANVVK-FSNDGRLMLLTTME-G-----HIHVLD  234 (332)
Q Consensus       168 ~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~------~v~~v~-~s~dg~~l~~~~~d-g-----~i~i~d  234 (332)
                         +.+                            ..++..      .+..++ |||||++++++..+ +     .|.+|+
T Consensus       240 ---~~~----------------------------~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~  288 (365)
T 1jof_A          240 ---PPG----------------------------IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFK  288 (365)
T ss_dssp             ---CTT----------------------------CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEE
T ss_pred             ---CCC----------------------------cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEE
Confidence               000                            000100      256789 99999988766533 2     899999


Q ss_pred             cc-CCeEeEEeeecCCCCCcceEEEECC---CCCEEEEEcCC-CcEEEEECCCC
Q 020021          235 SF-RGTLLSTYNVKPVSRNSTLEASFSP---EGMFVISGSGD-GSVYAWSVRSG  283 (332)
Q Consensus       235 ~~-~~~~~~~~~~~~~~~~~~~~v~~sp---dg~~l~sgs~D-g~i~vWd~~~~  283 (332)
                      +. ++++.........+......++|+|   ||++|++++.+ ++|++|++...
T Consensus       289 ~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          289 LRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            86 5665432111111222344689999   89999999865 89999998765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=8.1e-14  Score=119.82  Aligned_cols=240  Identities=9%  Similarity=0.014  Sum_probs=160.9

Q ss_pred             cEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           36 RISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~-tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      ...+++++++|++++ +...++.|.+||..++........+...+..+++.+++. ++++..   ++.|.+||.......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~---~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF---NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET---TTEEEEECTTCSCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC---CCEEEEEeCCCceEe
Confidence            678999999999888 557889999999765543222122223567788988877 444432   568999998765443


Q ss_pred             EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCC
Q 020021          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEK  194 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~  194 (332)
                      .........+.++++.++++.+++...++.|.+|+..+......                                    
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~------------------------------------  144 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL------------------------------------  144 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC------------------------------------
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee------------------------------------
Confidence            22223346789999999999888877788888887543211000                                    


Q ss_pred             CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCc
Q 020021          195 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS  274 (332)
Q Consensus       195 ~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~  274 (332)
                             ..........++++++|+++++...++.|.+||...........   .....+..++++|+|+.+++...++.
T Consensus       145 -------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~d~~g~l~v~~~~~~~  214 (270)
T 1rwi_B          145 -------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTEHNTNQ  214 (270)
T ss_dssp             -------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEETTTSC
T ss_pred             -------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc---cCCCCceEEEECCCCCEEEEECCCCc
Confidence                   00011234678999999988888888999999987655432211   12245678999999988888888899


Q ss_pred             EEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccccccc
Q 020021          275 VYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKL  325 (332)
Q Consensus       275 i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~~  325 (332)
                      |++|+............+...+..++++|+++++++...+  +.++..+..++
T Consensus       215 v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          215 VVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             EEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            9999986644333222233457889999999988887655  77776655443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=9.6e-13  Score=116.76  Aligned_cols=245  Identities=8%  Similarity=0.051  Sum_probs=163.0

Q ss_pred             ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC-CCCceeE
Q 020021           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-GWDESLR  104 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-g~d~~v~  104 (332)
                      ....+.++...+.+++|+|+|++++++..++.|.+||..+++.......+...+..+++++++..++..... ...+.|.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~  115 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF  115 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence            345567777788999999999988899999999999999887665443445568889999998755554321 0015799


Q ss_pred             EEEccCCceEEEee--cccccEEEEEecCCCCeEEEeeC------CCcEEEEeCCCceEEEEEEe-cCceeEEEcCCCeE
Q 020021          105 LLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLV  175 (332)
Q Consensus       105 v~d~~~~~~~~~~~--~h~~~V~~v~~~~~~~~l~s~s~------Dg~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~  175 (332)
                      +||.+++.....+.  .+...+..+.+.|+++.+++...      .+.|..+|..+++....... .......+++++..
T Consensus       116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          116 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKV  195 (333)
T ss_dssp             EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSE
T ss_pred             EEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCE
Confidence            99988876543333  34567999999999988887654      24566666655444332221 22334567777753


Q ss_pred             E-EEE-eCCEEEEEECccCCCCCeeE------EEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec
Q 020021          176 F-AVA-FGGYIRMFDARKYEKGPFDI------FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (332)
Q Consensus       176 ~-~~~-~~~~i~vwd~~~~~~~~~~~------~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (332)
                      + .+. .++.|.+||..... ..+..      ....++ .....++++++|+++++...++.|.+||. .++.+..+...
T Consensus       196 l~v~~~~~~~i~~~d~~~~g-~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~  272 (333)
T 2dg1_A          196 LWVTETTANRLHRIALEDDG-VTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP  272 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS-SSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred             EEEEeCCCCeEEEEEecCCC-cCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence            3 333 36899999985311 11111      111111 24567999999999888888899999998 56666665432


Q ss_pred             CC---CCCcceEEEECCCCCEEEEEcCCC
Q 020021          248 PV---SRNSTLEASFSPEGMFVISGSGDG  273 (332)
Q Consensus       248 ~~---~~~~~~~v~~spdg~~l~sgs~Dg  273 (332)
                      ..   +...+..++|+||++.|+.++.++
T Consensus       273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          273 GRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCccccccCcceEEECCCCCEEEEEeCcc
Confidence            11   112567899999987776665553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.65  E-value=2.7e-13  Score=122.19  Aligned_cols=271  Identities=14%  Similarity=0.106  Sum_probs=183.5

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeEEeeecc-------cceeEEEEc
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKK-------YGVDLVCFT   85 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs----------~D~tv~iwd~~~~~~~~~~~~~~-------~~v~~~~~~   85 (332)
                      +.+...++..-..+ . +.++|||+++..++          .+++|.+||..+++.+.++.-..       .....+.|+
T Consensus        68 t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s  145 (386)
T 3sjl_D           68 AGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT  145 (386)
T ss_dssp             TTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred             CCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc
Confidence            45556666654555 3 99999999886665          46789999999999988875421       134568999


Q ss_pred             cCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCC-ceEEEEEEec--
Q 020021           86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLLRVQ--  162 (332)
Q Consensus        86 ~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~~~~--  162 (332)
                      ++++.++.+.. ..++.|.++|+.+++.+.++.--.  . ...+....+.+++.+.||++.+.++.+ ++........  
T Consensus       146 pDGk~lyVan~-~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~  221 (386)
T 3sjl_D          146 PDGKTLLFYQF-SPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH  221 (386)
T ss_dssp             TTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred             CCCCEEEEEEc-CCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceec
Confidence            99999887753 236789999999999888774321  1 122333456788889999999999876 5542211100  


Q ss_pred             -C-ce---eEEE-cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEe--------cCCCCCceeEEEcCCCCEEEEEcC--
Q 020021          163 -G-RP---AAAY-DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV--------GGDISDANVVKFSNDGRLMLLTTM--  226 (332)
Q Consensus       163 -~-~~---~~~~-~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~--------~~~~~~v~~v~~s~dg~~l~~~~~--  226 (332)
                       . .+   ...+ .+++.++.++.++.+.+.|+..........+.+        +-.......+++++++..+.....  
T Consensus       222 ~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~  301 (386)
T 3sjl_D          222 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR  301 (386)
T ss_dssp             CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             cccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence             0 01   1122 356666667778999999986432111111110        001223456888999877766542  


Q ss_pred             --------CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEEE-cCCCcEEEEECCCCceEEEecCCCCCC
Q 020021          227 --------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG-SGDGSVYAWSVRSGKEVASWMSFDTEP  296 (332)
Q Consensus       227 --------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sg-s~Dg~i~vWd~~~~~~~~~~~~~~~~v  296 (332)
                              .++|.++|+.+++.+.++...    ..+..++|+||++ +|++. ..++.|.++|..+++.++++..- +..
T Consensus       302 ~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p  376 (386)
T 3sjl_D          302 DEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHG  376 (386)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSS
T ss_pred             cccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCC
Confidence                    257999999999999887653    2556899999997 66664 56899999999999998887543 455


Q ss_pred             ceEEeCCC
Q 020021          297 PVIKWTPG  304 (332)
Q Consensus       297 ~~l~~sp~  304 (332)
                      +.|.+++|
T Consensus       377 ~~l~~s~d  384 (386)
T 3sjl_D          377 PQVITTAD  384 (386)
T ss_dssp             CCEEEECC
T ss_pred             ceeEECCc
Confidence            77888777

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.65  E-value=1.8e-13  Score=122.09  Aligned_cols=238  Identities=8%  Similarity=0.072  Sum_probs=155.7

Q ss_pred             CcEEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC------------
Q 020021           35 GRISSMDFHKSSSYLVTASDDE-----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN------------   97 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~-----tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~------------   97 (332)
                      ..+..+.|||||++|+.++.+.     .|.+||+.+++.........  +..++|+|+++.+++++..            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            4678899999999998887653     37888888887765554433  8889999999998887531            


Q ss_pred             ------C------CCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC-------cEEEEeCCCceEEEE
Q 020021           98 ------G------WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-------TVLLWDQRAEKCQGL  158 (332)
Q Consensus        98 ------g------~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg-------~i~iWd~~~~~~~~~  158 (332)
                            |      ....+.+||+.+++.+..+.. . .+..+.|+|+| .+++++.+.       ...+|.+.+++....
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l  213 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM  213 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe
Confidence                  0      135789999998876455555 4 78899999999 888876652       345554445544333


Q ss_pred             EEecCceeEEEcCCCe-EEEEEeC--------CEEEEEECccCCCCCeeEEEecCCCCCcee-EEEcCCCCEEEEEcCCC
Q 020021          159 LRVQGRPAAAYDDQGL-VFAVAFG--------GYIRMFDARKYEKGPFDIFSVGGDISDANV-VKFSNDGRLMLLTTMEG  228 (332)
Q Consensus       159 ~~~~~~~~~~~~~~~~-~~~~~~~--------~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~-v~~s~dg~~l~~~~~dg  228 (332)
                      ...  .....+++++. ++.++.+        ..|.+||  ..   .... ...++...+.. +.|+ || ++++++.++
T Consensus       214 ~~~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---~~~~-l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          214 FEK--VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK---EVMG-ILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             EEE--ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS---CEEE-SSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             ccC--cceeeECCCCCEEEEEEccccCCccccceEEEEC--CC---ceEe-ccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            222  22222256664 4444432        3677777  21   1111 11222344554 8899 98 888999999


Q ss_pred             eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcE-EEEECCCCceEEEecCCCCCC
Q 020021          229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV-YAWSVRSGKEVASWMSFDTEP  296 (332)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i-~vWd~~~~~~~~~~~~~~~~v  296 (332)
                      .+++| +.+++......    +...+..++|+|  ..+++++.++.. .||.+. ++ ...+..|+..+
T Consensus       284 ~~~l~-~~~g~~~~~~~----~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~~  343 (347)
T 2gop_A          284 SVNLY-IWDGEIKPIAK----GRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDPI  343 (347)
T ss_dssp             EEEEE-EESSSEEEEEC----SSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTSTT
T ss_pred             cEEEE-EcCCceEEEec----CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHhH
Confidence            99999 77665433221    245677889999  777887777765 788776 54 55566666543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.65  E-value=4.4e-14  Score=137.28  Aligned_cols=252  Identities=8%  Similarity=0.043  Sum_probs=158.5

Q ss_pred             eeEecc-----CCCcEEEEEECCCCCEEEEEeCC----------CcEEEEEcCC------CeeeEEee-ecccceeEEEE
Q 020021           27 GMSFRD-----YNGRISSMDFHKSSSYLVTASDD----------ESIRLYDVTA------ATCLKTIN-SKKYGVDLVCF   84 (332)
Q Consensus        27 ~~~l~~-----h~~~I~~i~~s~dg~~l~tgs~D----------~tv~iwd~~~------~~~~~~~~-~~~~~v~~~~~   84 (332)
                      .+.+..     |...+.+++|||||++|+.++.|          .+|.+||+.+      ++. ..+. .+...+..++|
T Consensus       117 ~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~  195 (662)
T 3azo_A          117 PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRL  195 (662)
T ss_dssp             CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEE
T ss_pred             CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceE
Confidence            345555     77789999999999999999988          6899999988      554 3444 44455677899


Q ss_pred             ccCCCEEEEecCCC----C-CceeEEEEcc-CC---ceEEEeecccccEEEEEecCCCCeEEEeeCCC--cEEEEeCCCc
Q 020021           85 TSHPTTVIYSSKNG----W-DESLRLLSLH-DN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR--TVLLWDQRAE  153 (332)
Q Consensus        85 ~~~~~~~~~~s~~g----~-d~~v~v~d~~-~~---~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg--~i~iWd~~~~  153 (332)
                      +|+++.+++++...    | ...|.+||+. ++   +......+|...+..+.|+|||+.+++++.|+  .|..||..++
T Consensus       196 SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~  275 (662)
T 3azo_A          196 SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG  275 (662)
T ss_dssp             CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC
T ss_pred             CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC
Confidence            99999998876432    1 2579999998 56   44555556678999999999999888888888  4555555454


Q ss_pred             eEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEE
Q 020021          154 KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL  233 (332)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~  233 (332)
                      +...........                           ...   .     -...+..++|+|++++++++.. +.+++|
T Consensus       276 ~~~~l~~~~~~~---------------------------~~p---~-----w~~~~~~~~~~~~~~~~~~~~~-~~~~l~  319 (662)
T 3azo_A          276 AATQLCRREEEF---------------------------AGP---L-----WTPGMRWFAPLANGLIAVVHGK-GAAVLG  319 (662)
T ss_dssp             CEEESSCCSSBS---------------------------SCC---C-----CSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred             ceeecccccccc---------------------------cCc---c-----ccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence            432211100000                           000   0     0012456899999999999988 988888


Q ss_pred             --EccCCeEeEEeeecCCCCCcceEE-EECCCCCEEEEEcCCC--cEEEEECCCCceEEEecCCCCCCceEEeCCCeeEE
Q 020021          234 --DSFRGTLLSTYNVKPVSRNSTLEA-SFSPEGMFVISGSGDG--SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF  308 (332)
Q Consensus       234 --d~~~~~~~~~~~~~~~~~~~~~~v-~~spdg~~l~sgs~Dg--~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  308 (332)
                        |..+++ +..+.   .+...+..+ +++++.-++++++.+.  .|++||+.+++.......+...+....+++.....
T Consensus       320 ~~d~~~~~-~~~l~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~  395 (662)
T 3azo_A          320 ILDPESGE-LVDAA---GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRT  395 (662)
T ss_dssp             EEETTTTE-EEECC---SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEE
T ss_pred             EEECCCCc-EEEec---CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEE
Confidence              655555 34443   223344444 4444333444556554  46666776766543333444444444555555544


Q ss_pred             Eeccc--eEEEec
Q 020021          309 VTGSS--ELSFWI  319 (332)
Q Consensus       309 ~t~~~--d~~~w~  319 (332)
                      .....  .+..|.
T Consensus       396 ~~~~dg~~i~~~~  408 (662)
T 3azo_A          396 FTAPDGREIHAHI  408 (662)
T ss_dssp             EECTTSCEEEEEE
T ss_pred             EEcCCCCEEEEEE
Confidence            44422  344444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.64  E-value=5.4e-12  Score=114.29  Aligned_cols=258  Identities=11%  Similarity=0.022  Sum_probs=170.2

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeEEeeec-------ccceeEEEEcc
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSK-------KYGVDLVCFTS   86 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs----------~D~tv~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~   86 (332)
                      .++...+..-..+  .+.|||||+++..+.          .|.+|.+||..+++.+.++...       ......+.++|
T Consensus        57 ~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp  134 (373)
T 2mad_H           57 GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP  134 (373)
T ss_pred             CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC
Confidence            4445556544444  899999999988775          3788999999998888776532       11234688999


Q ss_pred             CCCEEEEecCCCCCceeEEEEccCCceEEE-eecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEE----
Q 020021           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRY-FKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLR----  160 (332)
Q Consensus        87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~-~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~----  160 (332)
                      +++.++.++.. .++.|.++| ++++.+.. +.-. .   ++.+.|++ +.+++.+.||++.++|. +++......    
T Consensus       135 DG~~l~v~n~~-~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~  207 (373)
T 2mad_H          135 NNADLLFFQFA-AGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM  207 (373)
T ss_pred             CCCEEEEEecC-CCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc
Confidence            99999887532 257899999 99887766 4321 1   23445554 46778889999999999 776553322    


Q ss_pred             -ecCce---eEEEc-CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecC--------CCCCceeEEEcCCCCEEEEEcC-
Q 020021          161 -VQGRP---AAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDGRLMLLTTM-  226 (332)
Q Consensus       161 -~~~~~---~~~~~-~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~--------~~~~v~~v~~s~dg~~l~~~~~-  226 (332)
                       ....+   ...+. ..+.++.....+.+.+.|+..........+.+..        .......++++||++.+.+... 
T Consensus       208 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~  287 (373)
T 2mad_H          208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE  287 (373)
T ss_pred             ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEecc
Confidence             11111   01112 2344444556788888887543211111111100        1122344789999887666543 


Q ss_pred             ---------CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEEEc-CCCcEEEEECCCCceEEEecCCCC
Q 020021          227 ---------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVYAWSVRSGKEVASWMSFDT  294 (332)
Q Consensus       227 ---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sgs-~Dg~i~vWd~~~~~~~~~~~~~~~  294 (332)
                               .+.|.++|..+++.+.++...    .....++|+|||+ .++++. .++.|.++|+.+++.+..+.....
T Consensus       288 ~~~~~~~~~~~~V~VID~~t~~vv~~i~~g----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~  362 (373)
T 2mad_H          288 QSAWKLHAAAKEVTSVTGLVGQTSSQISLG----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS  362 (373)
T ss_pred             CCcccccCCCCeEEEEECCCCEEEEEEECC----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCC
Confidence                     358999999999998877532    2456799999999 788877 589999999999998877433333

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.64  E-value=1.8e-12  Score=123.54  Aligned_cols=271  Identities=14%  Similarity=0.140  Sum_probs=182.7

Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc--CCceEEEeecc
Q 020021           43 HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH--DNKYLRYFKGH  120 (332)
Q Consensus        43 s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~--~~~~~~~~~~h  120 (332)
                      +|.+.++++...|++|.++|..+++.+.++.... .+..+.|++++++++.++.   |+.|.+||+.  +++.+..+...
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~---dg~V~viD~~~~t~~~v~~i~~G  239 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTTVAEIKIG  239 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCCEEEEEECC
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcC---CCeEEEEECCCCCCcEeEEEecC
Confidence            4555677888899999999999999998886543 4568899999999887753   7799999995  77777777654


Q ss_pred             cccEEEEEec----CCCCeEEEee-CCCcEEEEeCCCceEEEEEEecC-------------ceeEEEcCCC--eEEEEEe
Q 020021          121 HDRVVSLSLC----SSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQG-------------RPAAAYDDQG--LVFAVAF  180 (332)
Q Consensus       121 ~~~V~~v~~~----~~~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~~~-------------~~~~~~~~~~--~~~~~~~  180 (332)
                      .. ...++|+    |||++++.++ .++++.++|..+.+.+..+....             ......++.+  .++....
T Consensus       240 ~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          240 SE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             SE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            33 5789999    6999877665 56999999999888877665321             1122233332  2333334


Q ss_pred             CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE-cCCCeEEEEEccCCeEeEEeee-cCC-CCCcceEE
Q 020021          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNV-KPV-SRNSTLEA  257 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-~~~-~~~~~~~v  257 (332)
                      +|.|.++|......  +...... .......+.|+|||++++++ ..+++|.++|..+++++..... ... |...-.. 
T Consensus       319 ~g~v~~vd~~~~~~--~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-  394 (567)
T 1qks_A          319 TGKILLVDYTDLNN--LKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-  394 (567)
T ss_dssp             TTEEEEEETTCSSE--EEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-
T ss_pred             CCeEEEEecCCCcc--ceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-
Confidence            58999999765321  1111111 11234567899999987665 4678999999999998877654 211 1111111 


Q ss_pred             EECCCCC-EEEEEc-CCCcEEEEECCC-------CceEEEecCCCCCCceEEeCCCeeEEEe-c--------cceEEEec
Q 020021          258 SFSPEGM-FVISGS-GDGSVYAWSVRS-------GKEVASWMSFDTEPPVIKWTPGSLMFVT-G--------SSELSFWI  319 (332)
Q Consensus       258 ~~spdg~-~l~sgs-~Dg~i~vWd~~~-------~~~~~~~~~~~~~v~~l~~sp~~~~l~t-~--------~~d~~~w~  319 (332)
                      -++|++. .+++.. .+++|.++|..+       .+.+.++........-++.+|+++.+-. .        +..+.+++
T Consensus       395 ~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          395 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            2688854 445553 468999999987       5567776655444455889999976544 3        12478877


Q ss_pred             ccc
Q 020021          320 PDL  322 (332)
Q Consensus       320 ~~~  322 (332)
                      .+.
T Consensus       475 ~~~  477 (567)
T 1qks_A          475 IKA  477 (567)
T ss_dssp             GGG
T ss_pred             CCc
Confidence            653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=3.1e-13  Score=117.38  Aligned_cols=201  Identities=12%  Similarity=0.191  Sum_probs=143.3

Q ss_pred             CCCcEEEEEE-CCCCCEEEEEeC-CCcEEEEEcCCCeeeEEeeec-ccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           33 YNGRISSMDF-HKSSSYLVTASD-DESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        33 h~~~I~~i~~-s~dg~~l~tgs~-D~tv~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      |...+.++++ ++++.++++... ++.|++|| .+++.+..+... ...+..+++.+++...++..   .++.|.+||..
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~~~~~  150 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVEC---KVMRVIIFDQN  150 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEET---TTTEEEEECTT
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEEC---CCCEEEEEcCC
Confidence            4467889999 577877777644 89999999 567776666432 24577889999887444433   25789999964


Q ss_pred             CCceEEEee--cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEE
Q 020021          110 DNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF  187 (332)
Q Consensus       110 ~~~~~~~~~--~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw  187 (332)
                       ++.+..+.  ++...+.+++++++++.+++.+.++.|++||.... ....+..                          
T Consensus       151 -g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~--------------------------  202 (286)
T 1q7f_A          151 -GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIGG--------------------------  202 (286)
T ss_dssp             -SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEESC--------------------------
T ss_pred             -CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EEEEEcc--------------------------
Confidence             55555554  45567899999999998888888999999997432 2111100                          


Q ss_pred             ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC-eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEE
Q 020021          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  266 (332)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l  266 (332)
                                     .+.......++++++|+++++...++ .|.+||. .++.+..+.... ....+..++++|+|+.+
T Consensus       203 ---------------~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~  265 (286)
T 1q7f_A          203 ---------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV-KHAQCFDVALMDDGSVV  265 (286)
T ss_dssp             ---------------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-CCSCEEEEEEETTTEEE
T ss_pred             ---------------CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-CCCcceeEEECCCCcEE
Confidence                           01112356789999999999988886 9999995 566666665432 22345689999999988


Q ss_pred             EEEcCCCcEEEEECCCC
Q 020021          267 ISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       267 ~sgs~Dg~i~vWd~~~~  283 (332)
                      ++ +.|++|++|++...
T Consensus       266 vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          266 LA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EE-ETTTEEEEEECSCC
T ss_pred             EE-CCCCeEEEEEcccc
Confidence            87 57999999998653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.62  E-value=1.4e-13  Score=122.57  Aligned_cols=207  Identities=9%  Similarity=0.109  Sum_probs=146.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-eeEEee---------ecccceeEEEEcc-CCCEEEEecCCCCC
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTIN---------SKKYGVDLVCFTS-HPTTVIYSSKNGWD  100 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~~~~~s~~g~d  100 (332)
                      ++-.....|+|+|+|+++++...++.|++||..... .+..+.         .+-.....+++.+ ++...++.+  ..+
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~--~~~  165 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG--YCN  165 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC--SSC
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC--CCC
Confidence            444678899999999999999999999999986542 445542         2223467899999 555444432  126


Q ss_pred             ceeEEEEccCCceEEEee----------cccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEE
Q 020021          101 ESLRLLSLHDNKYLRYFK----------GHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY  169 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~~~----------~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~  169 (332)
                      +.|++|| .+++.+..+.          ++.....+++++|+ +..+++...++.|++||..+++....+....      
T Consensus       166 ~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~------  238 (329)
T 3fvz_A          166 SRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS------  238 (329)
T ss_dssp             CEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT------
T ss_pred             CeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc------
Confidence            7899999 5667766664          23445899999998 7788888889999999988676554432111      


Q ss_pred             cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC------CCCEEEEEcCCCeEEEEEccCCeEeEE
Q 020021          170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN------DGRLMLLTTMEGHIHVLDSFRGTLLST  243 (332)
Q Consensus       170 ~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~------dg~~l~~~~~dg~i~i~d~~~~~~~~~  243 (332)
                                                         ....+..++++|      +|+.+++...+.+|++||..+++.+..
T Consensus       239 -----------------------------------~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~  283 (329)
T 3fvz_A          239 -----------------------------------FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV  283 (329)
T ss_dssp             -----------------------------------TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred             -----------------------------------cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence                                               001223445555      444444445566999999999998877


Q ss_pred             eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      +.....+...+..++++|||+.+++...++.|++|++..
T Consensus       284 ~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          284 FKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             ECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            643233445677899999999999999999999999853

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=2.3e-11  Score=105.64  Aligned_cols=275  Identities=8%  Similarity=0.056  Sum_probs=185.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeE-EeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      ......+.+|.++++|++.++...++.|.+||.. ++... .+......+..+++.+++...+...   .++.|..+|..
T Consensus        16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~---~~~~v~~~d~~   91 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTEN---GANKIGKLSKK   91 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEET---TTTEEEEECTT
T ss_pred             CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEec---CCCeEEEECCC
Confidence            3445678999999999999888889999999988 55433 1222234577788888776444432   14678899887


Q ss_pred             CCceEE-EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec----CceeEEEcCCCeEEEEEe-CCE
Q 020021          110 DNKYLR-YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF-GGY  183 (332)
Q Consensus       110 ~~~~~~-~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~  183 (332)
                       ++... .+......+.++++.++++.+++...++.|..+|.. ++.. .+..+    ......+++++.++.+.. ++.
T Consensus        92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  168 (300)
T 2qc5_A           92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNS  168 (300)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence             55432 222244678999999999988888778899999987 5443 22222    122445666676655554 578


Q ss_pred             EEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCC
Q 020021          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (332)
Q Consensus       184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg  263 (332)
                      |..+|..    +.+..+...........++++++|.++++....+.|.++|. +++... +.. +.....+..++++++|
T Consensus       169 i~~~~~~----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g  241 (300)
T 2qc5_A          169 IGRITNT----GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDI-PTPNARPHAITAGKNS  241 (300)
T ss_dssp             EEEECTT----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECSTT
T ss_pred             EEEECCC----CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EEC-CCCCCCceEEEECCCC
Confidence            9999862    22333333233345778999999998888888889999998 555433 221 1233456789999999


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEE-ecCCCCCCceEEeCCCeeEEEeccceEEEecc
Q 020021          264 MFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  320 (332)
Q Consensus       264 ~~l~sgs~Dg~i~vWd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~  320 (332)
                      +.+++...++.|..||. +++.... +......+..+++.|+|+++++....+..++|
T Consensus       242 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~i~~~~p  298 (300)
T 2qc5_A          242 EIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALKCKIGKLNL  298 (300)
T ss_dssp             CEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECSSEEEEEEE
T ss_pred             CEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEccCceEEeCC
Confidence            98887777889999998 4543322 23234568899999999888776533433443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=2e-12  Score=113.53  Aligned_cols=244  Identities=8%  Similarity=0.055  Sum_probs=159.2

Q ss_pred             CCcEEEEEECCCCCEEEE-------EeCCCcEEEEEcCCCeeeEEee----ecccceeEEEEccCCCEEEEecCCCCCce
Q 020021           34 NGRISSMDFHKSSSYLVT-------ASDDESIRLYDVTAATCLKTIN----SKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~t-------gs~D~tv~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~s~~g~d~~  102 (332)
                      -....+++|+++|.++++       +..++.|.+||..+++......    .+...+..+++.+++..++++..   .+.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~---~~~   93 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---RLG   93 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---TTE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC---CCC
Confidence            345678999999998888       6788999999988877543221    13345777888888334444432   336


Q ss_pred             eEEEEccCCceEEE-eec----ccccEEEEEecCCCCeEEEeeCC---------------CcEEEEeCCCceEEEEEEec
Q 020021          103 LRLLSLHDNKYLRY-FKG----HHDRVVSLSLCSSKDCFISGSLD---------------RTVLLWDQRAEKCQGLLRVQ  162 (332)
Q Consensus       103 v~v~d~~~~~~~~~-~~~----h~~~V~~v~~~~~~~~l~s~s~D---------------g~i~iWd~~~~~~~~~~~~~  162 (332)
                      +.+||.+ ++.... ...    +...+..+++.++++..++...+               +.|..||.. ++.....   
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~---  168 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD---  168 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE---
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec---
Confidence            8899988 665433 221    12457899999999887776654               334444432 2111000   


Q ss_pred             CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEc----CCCCE-EEEEcCCCeEEEEEcc-
Q 020021          163 GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS----NDGRL-MLLTTMEGHIHVLDSF-  236 (332)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s----~dg~~-l~~~~~dg~i~i~d~~-  236 (332)
                                                            .   .....+.++++    |+|+. +++...++.|.+||.. 
T Consensus       169 --------------------------------------~---~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~  207 (314)
T 1pjx_A          169 --------------------------------------T---AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG  207 (314)
T ss_dssp             --------------------------------------E---EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE
T ss_pred             --------------------------------------c---CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC
Confidence                                                  0   00123567888    99965 4555678999999976 


Q ss_pred             CCeEeE--EeeecCCCC-CcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCee-EEEecc
Q 020021          237 RGTLLS--TYNVKPVSR-NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS  312 (332)
Q Consensus       237 ~~~~~~--~~~~~~~~~-~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~t~~  312 (332)
                      .++...  .+.....+. .....++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+|+++ ++++..
T Consensus       208 ~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          208 PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence            454321  111111222 3456789999999999888889999999987777666665656789999999998 666655


Q ss_pred             c--eEEEecccccccc
Q 020021          313 S--ELSFWIPDLSKLG  326 (332)
Q Consensus       313 ~--d~~~w~~~~~~~~  326 (332)
                      .  .+..++++..++.
T Consensus       288 ~~~~l~~~~~~~~g~~  303 (314)
T 1pjx_A          288 ENNAVWKFEWQRNGKK  303 (314)
T ss_dssp             TTTEEEEEECSSCBCC
T ss_pred             CCCeEEEEeCCCCCcc
Confidence            5  5777777654444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.62  E-value=6.3e-12  Score=113.89  Aligned_cols=276  Identities=7%  Similarity=-0.086  Sum_probs=177.0

Q ss_pred             ECCCCCEEEEEeC--CC---cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC-------CCCceeEEEEcc
Q 020021           42 FHKSSSYLVTASD--DE---SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLH  109 (332)
Q Consensus        42 ~s~dg~~l~tgs~--D~---tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~v~v~d~~  109 (332)
                      ..|+++++.....  +.   +|.+||..+++.+.++.....+  .++++|+++.++.+...       ..++.|.++|..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            4577777665543  22   8999999999988887754433  78999999998887521       135789999999


Q ss_pred             CCceEEEeecc-------cccEEEEEecCCCCeEEEeeC--CCcEEEEeCCCceEEEE-EEecCceeEEEcCCCeEEEEE
Q 020021          110 DNKYLRYFKGH-------HDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGL-LRVQGRPAAAYDDQGLVFAVA  179 (332)
Q Consensus       110 ~~~~~~~~~~h-------~~~V~~v~~~~~~~~l~s~s~--Dg~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  179 (332)
                      +.+.+..+.--       ...-..+.|+|||++|+.+..  +..|.++| .+++.... +..+............+++..
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~  184 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLC  184 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEc
Confidence            88776655321       123457899999999988874  47899999 99887766 544332212222233455556


Q ss_pred             eCCEEEEEECccCCCCCeeEEEe----cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe--EeEEeeecCC----
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSV----GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKPV----  249 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~----~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~----  249 (332)
                      .++.+.++|. ..+.  ......    .+...-.....+++++..++..+.++.+.++|...+.  .+..+.....    
T Consensus       185 ~dg~~~~vd~-~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~  261 (373)
T 2mad_H          185 AQGGLAKTDH-AGGA--AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA  261 (373)
T ss_pred             CCCCEEEEEC-CCcE--EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc
Confidence            6888999988 4321  101000    0110001223566776655555578899999986543  2333321100    


Q ss_pred             ---CCCcceEEEECCCCCEEEEEcC----------CCcEEEEECCCCceEEEecCCCCCCceEEeCCCee-EEEecc---
Q 020021          250 ---SRNSTLEASFSPEGMFVISGSG----------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS---  312 (332)
Q Consensus       250 ---~~~~~~~v~~spdg~~l~sgs~----------Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~t~~---  312 (332)
                         .......++++||++.++.+..          ++.|.+.|..+++.+..+. .......++|+||++ ++.++.   
T Consensus       262 ~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~  340 (373)
T 2mad_H          262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGT  340 (373)
T ss_pred             cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCC
Confidence               0111223789999988877643          3579999999999888874 344689999999998 565543   


Q ss_pred             ceEEEecccccc
Q 020021          313 SELSFWIPDLSK  324 (332)
Q Consensus       313 ~d~~~w~~~~~~  324 (332)
                      .++.+++....+
T Consensus       341 ~~V~ViD~~t~~  352 (373)
T 2mad_H          341 EVLHIYDAGAGD  352 (373)
T ss_pred             CeEEEEECCCCC
Confidence            347777765433

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.61  E-value=5.2e-12  Score=120.33  Aligned_cols=293  Identities=11%  Similarity=0.093  Sum_probs=193.5

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC--CCeeeEEeeecccceeEEEEc----cCCCEEEEecCC
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFT----SHPTTVIYSSKN   97 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~s~~   97 (332)
                      .+...++.... .+..+.|+|||+++.+++.|+.|.+||+.  +++.+.++..... ...++|+    |+++.++.++. 
T Consensus       187 ~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~-  263 (567)
T 1qks_A          187 YEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAY-  263 (567)
T ss_dssp             CCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEE-
T ss_pred             CeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEc-
Confidence            34455554333 45689999999999999999999999996  7888877765433 4578899    69998887753 


Q ss_pred             CCCceeEEEEccCCceEEEeec----------ccc-cEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEec---
Q 020021           98 GWDESLRLLSLHDNKYLRYFKG----------HHD-RVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ---  162 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~----------h~~-~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~---  162 (332)
                       +++++.++|..+.+.++.+.-          |.. .+..+.+++++. .+++...+|.|.++|....+........   
T Consensus       264 -~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~  342 (567)
T 1qks_A          264 -WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER  342 (567)
T ss_dssp             -ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred             -cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccc
Confidence             478999999999888876542          223 678888888755 5566677899999998765433222211   


Q ss_pred             CceeEEEcCCCeEEEEEe--CCEEEEEECccCCCCCeeEEEe-cCCCCCceeEE-EcCC-CCEEEEEc-CCCeEEEEEcc
Q 020021          163 GRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSV-GGDISDANVVK-FSND-GRLMLLTT-MEGHIHVLDSF  236 (332)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~--~~~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~v~-~s~d-g~~l~~~~-~dg~i~i~d~~  236 (332)
                      ......+++++.++.++.  ++.|.++|+.+.+.  .....+ +...-.-.... ++|+ |.+++++. .++.|.++|..
T Consensus       343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl--~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          343 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL--VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             cccCceECCCCCEEEEEeCCCCeEEEEECCCCcE--EEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence            122456778887666554  58999999976431  222333 21111112233 5787 45555554 46899999988


Q ss_pred             C-------CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC-------CCcEEEEECCCC-----ce-EEEec------
Q 020021          237 R-------GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-------DGSVYAWSVRSG-----KE-VASWM------  290 (332)
Q Consensus       237 ~-------~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~-------Dg~i~vWd~~~~-----~~-~~~~~------  290 (332)
                      .       .+.+.++....   .....+..+||+++|.....       ..+|.|+|+.+.     .. +..+.      
T Consensus       421 ~~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~  497 (567)
T 1qks_A          421 PEGHPDNAWKILDSFPALG---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAG  497 (567)
T ss_dssp             TTTCTTTBTSEEEEEECSC---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHT
T ss_pred             CCCCccccCEEEEEEecCC---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccc
Confidence            7       55666665322   22234778999999988653       359999999876     21 12221      


Q ss_pred             --CCCCCCceEEeCCCeeEE-Eec------cceEEEeccccccc
Q 020021          291 --SFDTEPPVIKWTPGSLMF-VTG------SSELSFWIPDLSKL  325 (332)
Q Consensus       291 --~~~~~v~~l~~sp~~~~l-~t~------~~d~~~w~~~~~~~  325 (332)
                        .-...+.++.|+|+|+.+ ++.      ++.+.+.+....+|
T Consensus       498 ~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~  541 (567)
T 1qks_A          498 ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  541 (567)
T ss_dssp             CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             cCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence              113467889999999754 442      34477776655443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=7.9e-13  Score=129.82  Aligned_cols=272  Identities=8%  Similarity=0.000  Sum_probs=170.7

Q ss_pred             CCCCEEEEEeCCC-c--EEEEEc--CCCeeeEEee------ecccceeEEEEccCCCEEEEecCC-CCC-ceeEEEEccC
Q 020021           44 KSSSYLVTASDDE-S--IRLYDV--TAATCLKTIN------SKKYGVDLVCFTSHPTTVIYSSKN-GWD-ESLRLLSLHD  110 (332)
Q Consensus        44 ~dg~~l~tgs~D~-t--v~iwd~--~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~s~~-g~d-~~v~v~d~~~  110 (332)
                      |+|++++-...++ .  -.||-.  ..++....+.      .+...+...+|+|+++.+++++.. |.+ .+|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8898876555432 1  145543  3343221111      122346778999999999887642 211 3899999999


Q ss_pred             CceEEEeecccccEEEEEecCCCCeEEEeeCCCc----------------EEEEeCCCceEE--EEEEecC----ceeEE
Q 020021          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT----------------VLLWDQRAEKCQ--GLLRVQG----RPAAA  168 (332)
Q Consensus       111 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~----------------i~iWd~~~~~~~--~~~~~~~----~~~~~  168 (332)
                      ++.+.....+. .+..++|+|||+.|+.++.|+.                |.+|++.++...  ..+....    .....
T Consensus       161 g~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~  239 (710)
T 2xdw_A          161 AKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE  239 (710)
T ss_dssp             TEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred             CCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence            98765433232 3667999999999999988876                999999876532  1222211    22456


Q ss_pred             EcCCCeEEEEE-e-----CCEEEEEECcc------CCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC----CeEEE
Q 020021          169 YDDQGLVFAVA-F-----GGYIRMFDARK------YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME----GHIHV  232 (332)
Q Consensus       169 ~~~~~~~~~~~-~-----~~~i~vwd~~~------~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d----g~i~i  232 (332)
                      +++++..++.. .     +..|.+||+..      ... ....+.  .+...+. ..++|+|+.++..+..    +.|.+
T Consensus       240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~--~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~  315 (710)
T 2xdw_A          240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLI--DNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLIN  315 (710)
T ss_dssp             ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEE--CSSSSCE-EEEEEETTEEEEEECTTCTTCEEEE
T ss_pred             EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEee--CCCCcEE-EEEeccCCEEEEEECCCCCCCEEEE
Confidence            77877654433 3     46899999875      211 122222  2222333 3588999887766553    36999


Q ss_pred             EEccCCeE--eEEeeecCCCC-CcceEEEECCCCCEEEEEcCCC--cEEEEECCCCceEEEecCCCCCCceEEeCCCeeE
Q 020021          233 LDSFRGTL--LSTYNVKPVSR-NSTLEASFSPEGMFVISGSGDG--SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLM  307 (332)
Q Consensus       233 ~d~~~~~~--~~~~~~~~~~~-~~~~~v~~spdg~~l~sgs~Dg--~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  307 (332)
                      ||+.++..  ...+.  +... ..+..++|++++.++++...|+  .|++|++.+++.+..+..+...+..++++|++..
T Consensus       316 ~d~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~  393 (710)
T 2xdw_A          316 IDFTDPEESKWKVLV--PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTE  393 (710)
T ss_dssp             EETTSCCGGGCEEEE--CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSE
T ss_pred             EeCCCCCcccceecc--CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCE
Confidence            99887641  12222  1112 2455688888889999999998  4666787678777777766667788999998854


Q ss_pred             E-Eeccc-----eEEEecccc
Q 020021          308 F-VTGSS-----ELSFWIPDL  322 (332)
Q Consensus       308 l-~t~~~-----d~~~w~~~~  322 (332)
                      + ++.++     .+..|+...
T Consensus       394 l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          394 IFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             EEEEEECSSCCCEEEEEETTS
T ss_pred             EEEEEeCCCCCCEEEEEECCC
Confidence            4 33332     255565543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.59  E-value=2.7e-13  Score=133.73  Aligned_cols=245  Identities=14%  Similarity=0.039  Sum_probs=154.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC--------
Q 020021           33 YNGRISSMDFHKSSSYLVTASDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--------   99 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D-----~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~--------   99 (332)
                      |+..+.+++|||||++||.++.+     .+|++||+.+++.+... .+...+..++|+|+ +.+++++...-        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44578899999999999887665     46999999999876532 12222356789999 88888764321        


Q ss_pred             ---CceeEEEEccCCce--EEEee--cccccEEEEEecCCCCeEEEeeCCC-----cEEEEeCCCc--eEEEEEEecC--
Q 020021          100 ---DESLRLLSLHDNKY--LRYFK--GHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAE--KCQGLLRVQG--  163 (332)
Q Consensus       100 ---d~~v~v~d~~~~~~--~~~~~--~h~~~V~~v~~~~~~~~l~s~s~Dg-----~i~iWd~~~~--~~~~~~~~~~--  163 (332)
                         ...|++|++.++..  ...+.  .|...+..+.|+|||++|+..+.++     .|.+||+.++  .+...+....  
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence               33588999877652  23333  3444688999999999888877654     7999998766  3122222211  


Q ss_pred             ceeEEEcCCCeEEEEEe----CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc-CC
Q 020021          164 RPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RG  238 (332)
Q Consensus       164 ~~~~~~~~~~~~~~~~~----~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~-~~  238 (332)
                      ........+..++..+.    ...|.+||+.... .....+. ..+...+..+.++ ++.++++...++..++|... .+
T Consensus       319 ~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g  395 (741)
T 1yr2_A          319 QWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG  395 (741)
T ss_dssp             CEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS
T ss_pred             eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence            11222223344444443    2469999976532 1112111 2222334556676 66778888888877766543 35


Q ss_pred             eEeEEeeecCCCCCcceEEEECCCCCEEE----EEcCCCcEEEEECCCCc
Q 020021          239 TLLSTYNVKPVSRNSTLEASFSPEGMFVI----SGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~v~~spdg~~l~----sgs~Dg~i~vWd~~~~~  284 (332)
                      .....+...  ....+..++++||++.|+    +....++|++||+.+++
T Consensus       396 ~~~~~l~~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          396 KPAGAVSLP--GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             CEEEECBCS--SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CceeeccCC--CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            544444321  234566788999998666    33456799999998876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.58  E-value=4.4e-12  Score=112.82  Aligned_cols=243  Identities=12%  Similarity=0.145  Sum_probs=166.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      .....+.++ ++.++++...+++|.+||..+++.+.++.. ......+++++++ .++.+.  ..++.|.++|.++++..
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g-~lyv~~--~~~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDE-KAYVTQ--IWDYRIFIINPKTYEIT  118 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETT-EEEEEE--BSCSEEEEEETTTTEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCC-eEEEEE--CCCCeEEEEECCCCeEE
Confidence            345677775 355667777789999999999999888853 3446778888887 555553  23789999999998877


Q ss_pred             EEeeccc-----ccEEEEEecCCCCeEEEee-CCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEEeC------
Q 020021          115 RYFKGHH-----DRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAFG------  181 (332)
Q Consensus       115 ~~~~~h~-----~~V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------  181 (332)
                      ..+....     .....+++ .+++.+++.. .+++|.++|.++++....+..... ....+++++.++.+..+      
T Consensus       119 ~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~  197 (328)
T 3dsm_A          119 GYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSP  197 (328)
T ss_dssp             EEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred             EEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCc
Confidence            6665332     14456666 3444444443 489999999999887777665433 34566777776666543      


Q ss_pred             -----CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021          182 -----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (332)
Q Consensus       182 -----~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  256 (332)
                           +.|.++|....+.  ...+.... ......++++||++.+.++..  .|.+||..+++....... .........
T Consensus       198 ~~~~~~~v~~id~~t~~v--~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~-~~~~~~p~g  271 (328)
T 3dsm_A          198 YGYEAPSLYRIDAETFTV--EKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFL-EFRDTKYYG  271 (328)
T ss_dssp             SCBCCCEEEEEETTTTEE--EEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSB-CCCSSCEEE
T ss_pred             cccCCceEEEEECCCCeE--EEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeee-cCCCCceEE
Confidence                 6899999865321  11222211 124688999999988877655  999999988775321111 111245667


Q ss_pred             EEECC-CCCEEEEE----cCCCcEEEEECCCCceEEEec
Q 020021          257 ASFSP-EGMFVISG----SGDGSVYAWSVRSGKEVASWM  290 (332)
Q Consensus       257 v~~sp-dg~~l~sg----s~Dg~i~vWd~~~~~~~~~~~  290 (332)
                      ++++| +++.+++.    ..+++|.+||.. ++.+.++.
T Consensus       272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          272 LTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             EEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence            99999 56666666    678999999997 88877764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=2.4e-12  Score=112.42  Aligned_cols=213  Identities=15%  Similarity=0.144  Sum_probs=147.3

Q ss_pred             eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEE
Q 020021           68 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL  147 (332)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~i  147 (332)
                      .+..+..+......++|.+++..+++...  .++.|..||..++  ...+..+...+.+++++++++.+++...++.|.+
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~--~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDV--RQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER   94 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEG--GGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeC--CCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence            33444444445677899999985555432  2678999999887  6667778888999999999998888888899999


Q ss_pred             EeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE---
Q 020021          148 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT---  224 (332)
Q Consensus       148 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~---  224 (332)
                      ||..+++........                  .+                     .....++.++++|+|+++++.   
T Consensus        95 ~d~~~g~~~~~~~~~------------------~~---------------------~~~~~~~~i~~d~~G~l~vtd~~~  135 (296)
T 3e5z_A           95 QREPGGEWESIADSF------------------EG---------------------KKLNSPNDVCLAPDGSLWFSDPTY  135 (296)
T ss_dssp             ECSTTCCEEEEECEE------------------TT---------------------EECCCCCCEEECTTSCEEEEECSH
T ss_pred             EcCCCCcEEEEeecc------------------CC---------------------CCCCCCCCEEECCCCCEEEECCcc
Confidence            998776543211100                  00                     001235678999999988873   


Q ss_pred             -c-------------CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC-CCce---E
Q 020021          225 -T-------------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-SGKE---V  286 (332)
Q Consensus       225 -~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~-~~~~---~  286 (332)
                       +             ..+.|..+|.. ++... +.   ........++|+|||+.|++.+.++.|++|++. +++.   .
T Consensus       136 g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~---~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~  210 (296)
T 3e5z_A          136 GIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-PI---RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQG  210 (296)
T ss_dssp             HHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-EE---CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEE
T ss_pred             ccccccccccccccCCCcEEEEECCC-CCEEE-ee---cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCC
Confidence             3             13567777765 44332 21   123345679999999999888888999999996 4543   2


Q ss_pred             EEecCCCCCCceEEeCCCeeEEEeccceEEEecccccccccc
Q 020021          287 ASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAY  328 (332)
Q Consensus       287 ~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~~~~~  328 (332)
                      ..+..+...+..++++++|+++++....+.+|+++.+.+..+
T Consensus       211 ~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g~~~~~~  252 (296)
T 3e5z_A          211 VHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDGDELGRV  252 (296)
T ss_dssp             EEECCSSSCCCSEEEBTTSCEEEEETTEEEEECTTSCEEEEE
T ss_pred             eEeeCCCCCCCeEEECCCCCEEEEcCCeEEEECCCCCEEEEE
Confidence            333334556788999999998888766699999886555544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.55  E-value=1.2e-11  Score=113.53  Aligned_cols=241  Identities=10%  Similarity=0.064  Sum_probs=159.4

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      .....|+|+++++++++...++.|++||..++.......... ... +++.+++..++++...+ ...|.+++...+...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~-~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEG-THTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSST-TCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCC-CceEEEEEcCCCcee
Confidence            357799999999988888888999999999887765544432 234 89999998887775422 227888887765544


Q ss_pred             EEe----ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECc
Q 020021          115 RYF----KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR  190 (332)
Q Consensus       115 ~~~----~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~  190 (332)
                      ..+    ..+...+.+++++|++..|..+..++.|..||..++... .+....                .          
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~----------------~----------  260 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLE----------------L----------  260 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECC----------------C----------
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEeccc----------------c----------
Confidence            444    224456788999995444555667889999998765421 110000                0          


Q ss_pred             cCCCCCeeEEEecCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEEccCCeEeEEeeecC---C---------CCCcceEE
Q 020021          191 KYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---V---------SRNSTLEA  257 (332)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~---------~~~~~~~v  257 (332)
                         .+.      .+ ..+.+.++|+| ++.++++...++.|+.||... .. ..+....   .         .-.....+
T Consensus       261 ---~g~------~~-~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gi  328 (409)
T 3hrp_A          261 ---SGS------LG-TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-EC-EWFCGSATQKTVQDGLREEALFAQPNGM  328 (409)
T ss_dssp             ---CSC------CC-CSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-CE-EEEEECTTCCSCBCEEGGGCBCSSEEEE
T ss_pred             ---cCC------CC-CCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-CE-EEEEeCCCCCCcCCCcccccEeCCCeEE
Confidence               000      00 00112789999 577888888889999998753 32 2222111   0         01335679


Q ss_pred             EECCCCCEEEEEc-CCCcEEEEECCCCceEEEecCC---------------CCCCceEEeCCCeeEEEeccceEEEe
Q 020021          258 SFSPEGMFVISGS-GDGSVYAWSVRSGKEVASWMSF---------------DTEPPVIKWTPGSLMFVTGSSELSFW  318 (332)
Q Consensus       258 ~~spdg~~l~sgs-~Dg~i~vWd~~~~~~~~~~~~~---------------~~~v~~l~~sp~~~~l~t~~~d~~~w  318 (332)
                      +++|+|+++++-+ .++.|+.|++.+++ +.++..+               -..+..|+++|++.++++....-+++
T Consensus       329 a~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir  404 (409)
T 3hrp_A          329 TVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR  404 (409)
T ss_dssp             EECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred             EEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence            9999999888888 89999999987775 4444333               12467899999998888876654433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=4.8e-11  Score=104.44  Aligned_cols=234  Identities=12%  Similarity=0.104  Sum_probs=151.1

Q ss_pred             eEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           28 MSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~d-g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      ..+..+..--.+..|+|+ +.++++...+++|..||..+++.. .+. ....+..+++.+++..++ +.    +..|.+|
T Consensus         6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v-~~----~~~l~~~   78 (297)
T 3g4e_A            6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVA-TI----GTKFCAL   78 (297)
T ss_dssp             EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEE-EE----TTEEEEE
T ss_pred             EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEE-EE----CCeEEEE
Confidence            334555556678889985 456777778899999999887652 232 234577889999998443 33    3578999


Q ss_pred             EccCCceEEEeec----ccccEEEEEecCCCCeEEEeeCCC---------cEEEEeCCCceEEEEEEecCceeEEEcCCC
Q 020021          107 SLHDNKYLRYFKG----HHDRVVSLSLCSSKDCFISGSLDR---------TVLLWDQRAEKCQGLLRVQGRPAAAYDDQG  173 (332)
Q Consensus       107 d~~~~~~~~~~~~----h~~~V~~v~~~~~~~~l~s~s~Dg---------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  173 (332)
                      |.++++.......    ....++.+.+.|+|++.++...+.         .-.+|.+...                   +
T Consensus        79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-------------------g  139 (297)
T 3g4e_A           79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-------------------H  139 (297)
T ss_dssp             ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-------------------S
T ss_pred             ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-------------------C
Confidence            9988765333221    234578899999998666543221         1222222111                   0


Q ss_pred             eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEE-EEEcCCCeEEEEEc--cCCeEeE--EeeecC
Q 020021          174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDS--FRGTLLS--TYNVKP  248 (332)
Q Consensus       174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~--~~~~~~~--~~~~~~  248 (332)
                      .+.        .+.+                .....+.++|+|||+.+ ++.+.++.|.+||.  .+|.+..  .+....
T Consensus       140 ~~~--------~~~~----------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~  195 (297)
T 3g4e_A          140 HVK--------KYFD----------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE  195 (297)
T ss_dssp             CEE--------EEEE----------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC
T ss_pred             CEE--------EEee----------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC
Confidence            000        0000                01124678999999855 56677899999987  4555421  121111


Q ss_pred             CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeC-CCee-EEEec
Q 020021          249 VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PGSL-MFVTG  311 (332)
Q Consensus       249 ~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~s-p~~~-~l~t~  311 (332)
                      ........++++++|+++++...++.|.+||..+++.+..+......+++++|. ||++ +++|.
T Consensus       196 ~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          196 KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            112345578999999988888888899999998899888877666678999998 8765 44554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.51  E-value=6.5e-12  Score=115.05  Aligned_cols=271  Identities=11%  Similarity=0.064  Sum_probs=175.0

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeEEeeec-------ccceeEEEE
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSK-------KYGVDLVCF   84 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs----------~D~tv~iwd~~~~~~~~~~~~~-------~~~v~~~~~   84 (332)
                      .+.+...++.--..+  .+.++|||++|..+.          .+++|.++|..+++.+.++.-.       ......+.+
T Consensus       107 ~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~  184 (426)
T 3c75_H          107 STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL  184 (426)
T ss_dssp             TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE
T ss_pred             CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE
Confidence            345556666544455  899999999887765          4679999999999998887542       122346789


Q ss_pred             ccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEE----E
Q 020021           85 TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGL----L  159 (332)
Q Consensus        85 ~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~----~  159 (332)
                      +++++.++.+.. ..++.|.+.|+.+++.+..+.--..    ....|+ .+.+++.+.||++.+.+..+++....    +
T Consensus       185 spDGk~lyV~n~-~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~  259 (426)
T 3c75_H          185 TPDNKNLLFYQF-SPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVF  259 (426)
T ss_dssp             CTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCC
T ss_pred             cCCCCEEEEEec-CCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeee
Confidence            999999888753 1257899999999988777653111    223343 35667778888888878755544321    1


Q ss_pred             EecCce---eEEEcCC-CeEEEEEeCCEEEEEECccCCCCCeeEEEecC--------CCCCceeEEEcCCCCEEEEEcC-
Q 020021          160 RVQGRP---AAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDGRLMLLTTM-  226 (332)
Q Consensus       160 ~~~~~~---~~~~~~~-~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~--------~~~~v~~v~~s~dg~~l~~~~~-  226 (332)
                      .....+   ...+.++ +.++.....+.+.+.|...........+.+..        .......++++|||+.+.+... 
T Consensus       260 ~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~  339 (426)
T 3c75_H          260 HTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQ  339 (426)
T ss_dssp             SCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEE
T ss_pred             ccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecc
Confidence            111111   1223343 34555556788888887532110001111100        0112234789999876655432 


Q ss_pred             ---------CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEEEc-CCCcEEEEECCCCceEEEecCCCCC
Q 020021          227 ---------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVYAWSVRSGKEVASWMSFDTE  295 (332)
Q Consensus       227 ---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sgs-~Dg~i~vWd~~~~~~~~~~~~~~~~  295 (332)
                               .+.|.++|..+.+.+.++...    .....++|+|||+ ++++.. .++.|.|+|+.+++.+.++......
T Consensus       340 ~~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~  415 (426)
T 3c75_H          340 RDEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRG  415 (426)
T ss_dssp             CCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSS
T ss_pred             cccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCC
Confidence                     357999999999999887643    2356799999999 888887 5999999999999998887333322


Q ss_pred             CceEEeCCC
Q 020021          296 PPVIKWTPG  304 (332)
Q Consensus       296 v~~l~~sp~  304 (332)
                       +.+..+||
T Consensus       416 -P~~i~~~~  423 (426)
T 3c75_H          416 -PQIITTHD  423 (426)
T ss_dssp             -CCEEECCC
T ss_pred             -CcEEEcCC
Confidence             33555665

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.50  E-value=1.6e-11  Score=110.74  Aligned_cols=277  Identities=10%  Similarity=0.013  Sum_probs=182.2

Q ss_pred             EECCCCCEEEEEeC-----CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC-------CCCceeEEEEc
Q 020021           41 DFHKSSSYLVTASD-----DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSL  108 (332)
Q Consensus        41 ~~s~dg~~l~tgs~-----D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~v~v~d~  108 (332)
                      ...|+++.+.....     +++|.+.|..+++.+.++.....+ . +.++|+++.++.++..       ..++.|.+||.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            34689988766654     689999999999999998765554 4 8999999988776420       12567999999


Q ss_pred             cCCceEEEeeccc-------ccEEEEEecCCCCeEEEeeC--CCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEE
Q 020021          109 HDNKYLRYFKGHH-------DRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  179 (332)
Q Consensus       109 ~~~~~~~~~~~h~-------~~V~~v~~~~~~~~l~s~s~--Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (332)
                      .+.+.+..+.-..       ..-..+.|+|||++++.+..  +++|.++|..+++....+..++...........+++.+
T Consensus       117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~  196 (386)
T 3sjl_D          117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC  196 (386)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEEC
Confidence            9999887764211       12346899999998877753  68999999999998888876553222222233455667


Q ss_pred             eCCEEEEEECccCCCCCeeEEEec--CCCCCc-eeEEE-cCCCCEEEEEcCCCeEEEEEccCCe--EeEEeeecC-----
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVG--GDISDA-NVVKF-SNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKP-----  248 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~--~~~~~v-~~v~~-s~dg~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-----  248 (332)
                      .||.+-+.++.....- .......  .....+ ....| .++|+++. .+.+|+|+++|..++.  .+..+....     
T Consensus       197 ~DG~~~~v~~~~~g~v-~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~  274 (386)
T 3sjl_D          197 RDGSLAKVAFGTEGTP-EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  274 (386)
T ss_dssp             TTSCEEEEECCSSSCC-EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             CCCCEEEEECCCCCeE-EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccc
Confidence            7888888887642111 1111000  000111 11355 47886554 5568999999986653  333332100     


Q ss_pred             -C-CCCcceEEEECCCCCEEEEEcC----------CCcEEEEECCCCceEEEecCCCCCCceEEeCCCee-EE-Eec--c
Q 020021          249 -V-SRNSTLEASFSPEGMFVISGSG----------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MF-VTG--S  312 (332)
Q Consensus       249 -~-~~~~~~~v~~spdg~~l~sgs~----------Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l-~t~--~  312 (332)
                       . .......++++|+++.++....          ...|.+.|+.+++.+..+.. ..++..|+++||++ +| ++.  +
T Consensus       275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~  353 (386)
T 3sjl_D          275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD  353 (386)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTT
T ss_pred             ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCC
Confidence             0 0112224788999988887642          24799999999998887643 23678999999986 44 443  4


Q ss_pred             ceEEEecccc
Q 020021          313 SELSFWIPDL  322 (332)
Q Consensus       313 ~d~~~w~~~~  322 (332)
                      .++.+.+...
T Consensus       354 ~~VsViD~~t  363 (386)
T 3sjl_D          354 KTLYIHDAES  363 (386)
T ss_dssp             TEEEEEETTT
T ss_pred             CeEEEEECCC
Confidence            5688887644

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.50  E-value=5.6e-12  Score=123.43  Aligned_cols=274  Identities=10%  Similarity=0.023  Sum_probs=165.6

Q ss_pred             CCCCCEEEEEeCCC---cEEEEEc--CCCeeeEEee------ecccceeEEEEccCCCEEEEecC-CC-CCceeEEEEcc
Q 020021           43 HKSSSYLVTASDDE---SIRLYDV--TAATCLKTIN------SKKYGVDLVCFTSHPTTVIYSSK-NG-WDESLRLLSLH  109 (332)
Q Consensus        43 s~dg~~l~tgs~D~---tv~iwd~--~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~s~-~g-~d~~v~v~d~~  109 (332)
                      +|+|++++-...++   .-.||-.  ..++....+.      .|...+..++|+|+++.++++.. +| .+.+|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            38899888777665   3556644  3443322221      23345778999999999887653 22 24789999999


Q ss_pred             CCceEEEeecccccE--EEEEecCCCCeEEEeeCCCc-------------EEEEeCCCceEE--EEEEec----CceeEE
Q 020021          110 DNKYLRYFKGHHDRV--VSLSLCSSKDCFISGSLDRT-------------VLLWDQRAEKCQ--GLLRVQ----GRPAAA  168 (332)
Q Consensus       110 ~~~~~~~~~~h~~~V--~~v~~~~~~~~l~s~s~Dg~-------------i~iWd~~~~~~~--~~~~~~----~~~~~~  168 (332)
                      +++.+.  ..+...+  ..++|+|||+.|+.++.|..             |++|++.++...  ..+...    ......
T Consensus       156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~  233 (695)
T 2bkl_A          156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD  233 (695)
T ss_dssp             TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred             CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence            987541  1232233  67899999999999999887             999999876521  222221    123456


Q ss_pred             EcCCCeEEE-EEeCC----EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc---CCCeEEEEEccCCeE
Q 020021          169 YDDQGLVFA-VAFGG----YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTL  240 (332)
Q Consensus       169 ~~~~~~~~~-~~~~~----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~---~dg~i~i~d~~~~~~  240 (332)
                      +++++..++ .+.++    .|.+||...   +....+..  +........+ ++|.+++.+.   .++.|.+||+.++..
T Consensus       234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~---~~~~~l~~--~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~  307 (695)
T 2bkl_A          234 LSRDGKYLFVYILRGWSENDVYWKRPGE---KDFRLLVK--GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR  307 (695)
T ss_dssp             ECTTSCCEEEEEEETTTEEEEEEECTTC---SSCEEEEE--CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEEcCCC---CceEEeec--CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc
Confidence            777775443 44343    566665432   22222221  2223344444 6777444443   257899999877642


Q ss_pred             --eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC-CCceEEEecCC-CCCCceEEeCCCeeEEE-eccc--
Q 020021          241 --LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-SGKEVASWMSF-DTEPPVIKWTPGSLMFV-TGSS--  313 (332)
Q Consensus       241 --~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~~-~~~v~~l~~sp~~~~l~-t~~~--  313 (332)
                        ...+.. ......+..++|+ ++..+++...|+..+||.+. +++.+..+..+ ...+..++++|++..++ +.++  
T Consensus       308 ~~~~~l~~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~  385 (695)
T 2bkl_A          308 ASWKEIVP-EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFT  385 (695)
T ss_dssp             GGCEEEEC-CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETT
T ss_pred             cCCeEEec-CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence              122211 1113345667887 78899999999988888664 45555555443 45567788999886554 3322  


Q ss_pred             ---eEEEecccccccc
Q 020021          314 ---ELSFWIPDLSKLG  326 (332)
Q Consensus       314 ---d~~~w~~~~~~~~  326 (332)
                         .+.+|+....++.
T Consensus       386 ~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          386 TPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             EEEEEEEEETTTCCEE
T ss_pred             CCCEEEEEECCCCcEE
Confidence               2666665544443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.45  E-value=2.1e-11  Score=119.30  Aligned_cols=245  Identities=12%  Similarity=0.092  Sum_probs=152.9

Q ss_pred             cCCCcEEEEEECCCCCEEE-----EEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC---------
Q 020021           32 DYNGRISSMDFHKSSSYLV-----TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---------   97 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~-----tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~---------   97 (332)
                      +|...+.+++|||||++||     +|+.+.+|++||+.+++.+... ........++|+ +++.+++++..         
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            4666799999999999988     3445578999999999875431 111113457899 99999888754         


Q ss_pred             -CCCceeEEEEccCCce----EEEeec-ccccEEEEEecCCCCeEEEe-e---CCCcEEEEeCCCce-EEEEEEecC--c
Q 020021           98 -GWDESLRLLSLHDNKY----LRYFKG-HHDRVVSLSLCSSKDCFISG-S---LDRTVLLWDQRAEK-CQGLLRVQG--R  164 (332)
Q Consensus        98 -g~d~~v~v~d~~~~~~----~~~~~~-h~~~V~~v~~~~~~~~l~s~-s---~Dg~i~iWd~~~~~-~~~~~~~~~--~  164 (332)
                       +....|++|++.++..    +..... |...+.++.++|||++|+-. +   .+..|.+||+.++. ....+....  .
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence             2234589999877542    323333 55567889999999977433 3   23589999987652 222222221  1


Q ss_pred             eeEEEcCCCeEEEEEe-C---CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC---eEEEEEccC
Q 020021          165 PAAAYDDQGLVFAVAF-G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFR  237 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~-~---~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg---~i~i~d~~~  237 (332)
                      ......+++.++..+. +   +.|..+|+..........+.  .+...+.  .++++++.++....++   .|++||+..
T Consensus       284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence            1122233444544443 2   57888998754322222222  2223333  8999998887766544   789999874


Q ss_pred             CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC----CcEEEEECCCCce
Q 020021          238 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD----GSVYAWSVRSGKE  285 (332)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D----g~i~vWd~~~~~~  285 (332)
                      +. ...+...  ....+..+.++|++..++....+    ++++.||+.+++.
T Consensus       360 ~~-~~~l~~p--~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          360 KR-VREVALP--GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             CE-EEEECCS--SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             Ce-eEEeecC--CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            43 3333321  22344456678888776665444    7999999987653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=2.9e-11  Score=104.89  Aligned_cols=175  Identities=8%  Similarity=0.041  Sum_probs=131.5

Q ss_pred             CCceeEEEEccCCceEEEeeccc-ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEE
Q 020021           99 WDESLRLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  177 (332)
Q Consensus        99 ~d~~v~v~d~~~~~~~~~~~~h~-~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (332)
                      .|+.|.+||.++++.+..+..+. ..+..+.+.|+|+.++  +.++.|..||. +++.+..+..+               
T Consensus        13 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~---------------   74 (276)
T 3no2_A           13 GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP---------------   74 (276)
T ss_dssp             TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC---------------
T ss_pred             CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC---------------
Confidence            38899999999999999998776 4788999999999888  45778999997 66544333210               


Q ss_pred             EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC-CCeEEEEEccCCeEeEEeeecCC---CCCc
Q 020021          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPV---SRNS  253 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~---~~~~  253 (332)
                                                 ....+..+.+.+||+++++.+. ++.+..+|. .|+.+..+.....   +...
T Consensus        75 ---------------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~  126 (276)
T 3no2_A           75 ---------------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQ  126 (276)
T ss_dssp             ---------------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGS
T ss_pred             ---------------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccccc
Confidence                                       0012456788999999998877 888988885 6887776654221   1123


Q ss_pred             ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccc
Q 020021          254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~  321 (332)
                      ...+++.++|+++++.+.++.|.+||.. ++.+..+... ..+..+.+.|+++.++++...  +..++++
T Consensus       127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          127 FRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             CSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             ccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence            3456789999999999999999999987 9998887654 356678889999888876654  6666666

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.43  E-value=7e-11  Score=108.18  Aligned_cols=277  Identities=9%  Similarity=0.002  Sum_probs=179.7

Q ss_pred             CCCCEEEEE-eCC----CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC-------CCCceeEEEEccCC
Q 020021           44 KSSSYLVTA-SDD----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDN  111 (332)
Q Consensus        44 ~dg~~l~tg-s~D----~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~v~v~d~~~~  111 (332)
                      ++++.+... ..+    ++|.++|..+++.+.++.....+  .+.++|+++.++.+...       ..++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            455654443 333    69999999999999999876655  78999999988877521       12568999999999


Q ss_pred             ceEEEeecc-------cccEEEEEecCCCCeEEEeeC--CCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCC
Q 020021          112 KYLRYFKGH-------HDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG  182 (332)
Q Consensus       112 ~~~~~~~~h-------~~~V~~v~~~~~~~~l~s~s~--Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (332)
                      +.+..+.--       -..-..+.|+|||++++.+..  +++|.+.|..+.+....+...............+++...+|
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG  239 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG  239 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence            888776421       122346789999998888764  57899999999998877766443212222234455556677


Q ss_pred             EEEEEECccCCCCCe--eEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEe--EEeeecCCC-------C
Q 020021          183 YIRMFDARKYEKGPF--DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVS-------R  251 (332)
Q Consensus       183 ~i~vwd~~~~~~~~~--~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~-------~  251 (332)
                      .+.+.+....+....  ..+..... .-...+.|++++..++..+..+.+.++|.......  ..+......       .
T Consensus       240 ~~~~V~~~~~~v~~~~~~~~~v~~~-p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          240 SLARVDFADGETKVTNTEVFHTEDE-LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             SEEEEECCTTCCEEEECCCCSCTTS-CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             CEEEEECCCCcEEEEeeeeeccCCC-ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence            777777632111000  00111111 11123568999988887788899999998654422  222210000       0


Q ss_pred             CcceEEEECCCCCEEEEEcC----------CCcEEEEECCCCceEEEecCCCCCCceEEeCCCee-EEEecc---ceEEE
Q 020021          252 NSTLEASFSPEGMFVISGSG----------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS---SELSF  317 (332)
Q Consensus       252 ~~~~~v~~spdg~~l~sgs~----------Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~t~~---~d~~~  317 (332)
                      .....++++||++.++....          ++.|.+.|..+.+.+..+.. ......++|+||++ ++.+..   .++.+
T Consensus       319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsV  397 (426)
T 3c75_H          319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHI  397 (426)
T ss_dssp             CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEE
Confidence            11113789999887776632          35799999999998888743 23578999999997 555543   45888


Q ss_pred             ecccccc
Q 020021          318 WIPDLSK  324 (332)
Q Consensus       318 w~~~~~~  324 (332)
                      ++....+
T Consensus       398 ID~~t~k  404 (426)
T 3c75_H          398 YDAATGE  404 (426)
T ss_dssp             EETTTCC
T ss_pred             EECCCCC
Confidence            8874433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.42  E-value=5e-11  Score=107.34  Aligned_cols=245  Identities=9%  Similarity=-0.029  Sum_probs=154.6

Q ss_pred             EEEEEeCCC----cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC-------CCCceeEEEEccCCceEEE
Q 020021           48 YLVTASDDE----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDNKYLRY  116 (332)
Q Consensus        48 ~l~tgs~D~----tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~v~v~d~~~~~~~~~  116 (332)
                      ..++-..+.    +|-+.|..+++.+.++.....+  .+.++|+++.++.+...       ..++.|.++|..+++.+.+
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            445555555    7889999999999999876655  68999999998887521       1267899999999999888


Q ss_pred             eecc-------cccEEEEEecCCCCeEEEeeC--CCcEEE--EeCCCceEEEEEEecCc---------eeEEEcCCC---
Q 020021          117 FKGH-------HDRVVSLSLCSSKDCFISGSL--DRTVLL--WDQRAEKCQGLLRVQGR---------PAAAYDDQG---  173 (332)
Q Consensus       117 ~~~h-------~~~V~~v~~~~~~~~l~s~s~--Dg~i~i--Wd~~~~~~~~~~~~~~~---------~~~~~~~~~---  173 (332)
                      +.-+       -..-..+.++|||++++.+..  +..+.+  +|..+   ...+.....         ......+++   
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~  188 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLA  188 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCE
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEE
Confidence            7533       023457899999998888764  457888  99866   223322110         000011111   


Q ss_pred             -----------------------------------eEEEEEeCCEEEEEECccCCCCCeeEEEec-------C-CCCCce
Q 020021          174 -----------------------------------LVFAVAFGGYIRMFDARKYEKGPFDIFSVG-------G-DISDAN  210 (332)
Q Consensus       174 -----------------------------------~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~-------~-~~~~v~  210 (332)
                                                         .++.++. +.+.+.|...........+.+.       + ......
T Consensus       189 ~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~  267 (368)
T 1mda_H          189 ASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ  267 (368)
T ss_dssp             EEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred             EEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence                                               1111222 3344444321100000000000       0 001122


Q ss_pred             eEEEcCCCCEEEEEcC---------CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEEEc-CCCcEEEEE
Q 020021          211 VVKFSNDGRLMLLTTM---------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVYAWS  279 (332)
Q Consensus       211 ~v~~s~dg~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sgs-~Dg~i~vWd  279 (332)
                      .++++|||+.+.++..         ++.+.++|+.+++.+.++....    ....++|+|||+ .+++.. .+++|.++|
T Consensus       268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~----~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH----DSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC----CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            3789999987776533         2356799999999888776432    356799999998 455555 599999999


Q ss_pred             CCCCceEEEecCCCCCCceEEeCC
Q 020021          280 VRSGKEVASWMSFDTEPPVIKWTP  303 (332)
Q Consensus       280 ~~~~~~~~~~~~~~~~v~~l~~sp  303 (332)
                      +.+++.+.++.... ....+++.+
T Consensus       344 ~~t~kvv~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          344 AASDQDQSSVELDK-GPESLSVQN  366 (368)
T ss_dssp             SSSCEEEEECCCCS-CCCEEECCC
T ss_pred             CCCCcEEEEEECCC-CCCEEEeec
Confidence            99999988876543 466777765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.42  E-value=2e-09  Score=93.17  Aligned_cols=236  Identities=8%  Similarity=0.065  Sum_probs=157.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee--ecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      .+...+.++.++++|.++++...++.|..||.. ++. ..+.  .....+..+++.+++...+....   ++.+.++|. 
T Consensus        54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~d~-  127 (299)
T 2z2n_A           54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMN---GNRIGRITD-  127 (299)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETT---TTEEEEECT-
T ss_pred             cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecC---CceEEEECC-
Confidence            345678999999999998888878999999986 332 2232  23345677888887754444322   567889998 


Q ss_pred             CCceEE-EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec----CceeEEEcCCCeEEEEEe-CCE
Q 020021          110 DNKYLR-YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF-GGY  183 (332)
Q Consensus       110 ~~~~~~-~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~  183 (332)
                      +++... .+..+...+.++++.++++..++...++.|..||. +++... +...    ......+++++.++.+.. ++.
T Consensus       128 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~  205 (299)
T 2z2n_A          128 DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNK  205 (299)
T ss_dssp             TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCce
Confidence            544332 23334567899999999988888777889999998 555432 2121    122455666676665553 678


Q ss_pred             EEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCC
Q 020021          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (332)
Q Consensus       184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg  263 (332)
                      |..||. ..   .+..+........+..++++++|+++++...++.|..||. .++. ..+... .....+..+++ ++|
T Consensus       206 i~~~~~-~g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~-~~~~~~~~i~~-~~g  277 (299)
T 2z2n_A          206 IGRITT-SG---EITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQ-IKSAEPHGICF-DGE  277 (299)
T ss_dssp             EEEECT-TC---CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECS-SSSCCEEEEEE-CSS
T ss_pred             EEEECC-CC---cEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCC-CCCCccceEEe-cCC
Confidence            999987 32   2333333333356788999999998888778899999998 4543 333322 22355678889 999


Q ss_pred             CEEEEEcCCCcEEEEECCCCc
Q 020021          264 MFVISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       264 ~~l~sgs~Dg~i~vWd~~~~~  284 (332)
                      +.+++.+ .+.+..++..+++
T Consensus       278 ~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          278 TIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             CEEEEET-TTEEEEEEEC---
T ss_pred             CEEEEec-CCcEEEEEcCccc
Confidence            9888776 5667777776543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.41  E-value=2.6e-11  Score=103.99  Aligned_cols=200  Identities=8%  Similarity=0.029  Sum_probs=137.9

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      ..+.+|+++++|+++++.. ++.|.+||....... .+. .....+..+++.+++...++...   ++.|.+|+..+...
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~---~~~i~~~~~~~~~~  141 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRG---NNRVVKLAAGSKTQ  141 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGG---GTEEEEECTTCCSC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECC---CCEEEEEECCCcee
Confidence            4678899999999777766 889999998765432 232 22245678889888864443322   56788887655443


Q ss_pred             EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCC
Q 020021          114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE  193 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~  193 (332)
                      ......+...+.++++.++++.+++...++.|.+||..........                                  
T Consensus       142 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~----------------------------------  187 (270)
T 1rwi_B          142 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP----------------------------------  187 (270)
T ss_dssp             EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC----------------------------------
T ss_pred             EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec----------------------------------
Confidence            3333334456788999999988888777889999987654321000                                  


Q ss_pred             CCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC
Q 020021          194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  273 (332)
Q Consensus       194 ~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg  273 (332)
                               .........++++++|.++++...++.|.+||........ ..  ..+...+..++++|+|+.+++...++
T Consensus       188 ---------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~--~~~~~~p~~i~~~~~g~l~v~~~~~~  255 (270)
T 1rwi_B          188 ---------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP--FTGLNTPLAVAVDSDRTVYVADRGND  255 (270)
T ss_dssp             ---------CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC--CCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred             ---------ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec--cCCCCCceeEEECCCCCEEEEECCCC
Confidence                     0001234678999999988888889999999986543322 11  11224567899999999999999999


Q ss_pred             cEEEEECCCCce
Q 020021          274 SVYAWSVRSGKE  285 (332)
Q Consensus       274 ~i~vWd~~~~~~  285 (332)
                      .|+++++...+.
T Consensus       256 ~v~~~~~~~~~~  267 (270)
T 1rwi_B          256 RVVKLTSLEHHH  267 (270)
T ss_dssp             EEEEECCCGGGS
T ss_pred             EEEEEcCCCccc
Confidence            999999876543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=2e-11  Score=109.28  Aligned_cols=266  Identities=10%  Similarity=0.016  Sum_probs=159.0

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEe--CCCcEEEEEcCCCeeeEEee-------ecccceeEEEEccCCCEEE
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTAS--DDESIRLYDVTAATCLKTIN-------SKKYGVDLVCFTSHPTTVI   92 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs--~D~tv~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~   92 (332)
                      +.++.+..+.   ..+..|+++|+|+++++..  .++.++||.+.+++. ..+.       .+-..+..+++.+++. ++
T Consensus         7 g~~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~   81 (343)
T 2qe8_A            7 DRLEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGI-VW   81 (343)
T ss_dssp             -CCEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSE-EE
T ss_pred             ceeEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCc-EE
Confidence            3455555555   6789999999999998864  234367776655543 3222       1234577889988875 43


Q ss_pred             EecCCCC----CceeEEEEccCCceEEEeec------ccccEEEEEecCCC-CeEEEee---CCCcEEEEeCCCceEEEE
Q 020021           93 YSSKNGW----DESLRLLSLHDNKYLRYFKG------HHDRVVSLSLCSSK-DCFISGS---LDRTVLLWDQRAEKCQGL  158 (332)
Q Consensus        93 ~~s~~g~----d~~v~v~d~~~~~~~~~~~~------h~~~V~~v~~~~~~-~~l~s~s---~Dg~i~iWd~~~~~~~~~  158 (332)
                      +... +.    +..|.+||+++++.+..+.-      +...+..+++.+++ ...++-+   .++.|.+||+.+++....
T Consensus        82 v~D~-g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           82 MLDN-GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             EEEC-HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             EEcC-CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE
Confidence            3321 21    35799999999887666543      22356889999754 4556665   788999999987765443


Q ss_pred             EEec-C-ce-eEEEcCCCeEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC-eEEEE
Q 020021          159 LRVQ-G-RP-AAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVL  233 (332)
Q Consensus       159 ~~~~-~-~~-~~~~~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg-~i~i~  233 (332)
                      +..+ . .+ ...+..++..+. ...++.++.|.                  ..++.+++||||+.+..+...+ .++.+
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             CTTCTTTSCCSCCCEETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             ecCCCcccccccceeECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeCCCCeEEEE
Confidence            3210 0 00 001111222211 11223333221                  1346799999998777766555 66666


Q ss_pred             Ecc---CCeE-----eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec-CCCCCCceEEeCCC
Q 020021          234 DSF---RGTL-----LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM-SFDTEPPVIKWTPG  304 (332)
Q Consensus       234 d~~---~~~~-----~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~-~~~~~v~~l~~sp~  304 (332)
                      +..   .+..     ...+... .+......++++++|+++++...++.|.+||..+++...... .....+..++|.|+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~  301 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD  301 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred             EHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence            642   1100     0000000 011233468999999999999999999999985665422221 12345788999999


Q ss_pred             eeEEEecc
Q 020021          305 SLMFVTGS  312 (332)
Q Consensus       305 ~~~l~t~~  312 (332)
                      ++++++..
T Consensus       302 g~l~v~~~  309 (343)
T 2qe8_A          302 GYLYFDCN  309 (343)
T ss_dssp             SCEEEEEC
T ss_pred             CcEEEEeC
Confidence            98888765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.40  E-value=7.7e-10  Score=97.05  Aligned_cols=230  Identities=11%  Similarity=0.111  Sum_probs=141.1

Q ss_pred             eeEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           27 GMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      ...+..+.....+..|+|+|+ ++++...++.|..|+. +++ ...+......+..+++.+++..+++...   ++.|.+
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~---~~~v~~  111 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHG---RRAITR  111 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETT---TTEEEE
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECC---CCEEEE
Confidence            334555556678899999998 6778888899999998 444 3445444555778899998874443321   457888


Q ss_pred             EEccCCceEEEeecc-----cccEEEEEecCCCCeEEE----eeCC-------------CcEEEEeCCCceEEEEEEecC
Q 020021          106 LSLHDNKYLRYFKGH-----HDRVVSLSLCSSKDCFIS----GSLD-------------RTVLLWDQRAEKCQGLLRVQG  163 (332)
Q Consensus       106 ~d~~~~~~~~~~~~h-----~~~V~~v~~~~~~~~l~s----~s~D-------------g~i~iWd~~~~~~~~~~~~~~  163 (332)
                      ++.. ++. ..+..+     ...+..+.+.++|+..+|    |..+             +.|..+|..+++.        
T Consensus       112 ~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--------  181 (305)
T 3dr2_A          112 SDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--------  181 (305)
T ss_dssp             ECTT-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--------
T ss_pred             ECCC-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--------
Confidence            8875 543 222221     123567888888887776    3221             1222222222111        


Q ss_pred             ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC------CeEEEEEccC
Q 020021          164 RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME------GHIHVLDSFR  237 (332)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d------g~i~i~d~~~  237 (332)
                                                        ....   .....+.++|+|||+.+..+...      +.|++||+..
T Consensus       182 ----------------------------------~~~~---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          182 ----------------------------------QRMA---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             ----------------------------------EEEE---EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred             ----------------------------------EEEe---cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence                                              0000   01224678999999976666554      7899999876


Q ss_pred             CeEeEEeee-cCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeE-EEeccc
Q 020021          238 GTLLSTYNV-KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLM-FVTGSS  313 (332)
Q Consensus       238 ~~~~~~~~~-~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~-l~t~~~  313 (332)
                      +. +..... ..........++++++|++.++. .+| |.+|+. +++.+..+.... .+..++|+|+++. ++++..
T Consensus       225 ~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          225 GA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             TE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE-EEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred             CC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc-EEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence            54 221111 11112233468899999965544 555 999998 567776665444 5889999998754 444444

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=1.3e-10  Score=114.71  Aligned_cols=259  Identities=12%  Similarity=0.103  Sum_probs=157.8

Q ss_pred             CCCCCEEEEEeCCCc---EEEEEcC-----CCeeeEEe------eecccceeEEEEccCCCEEEEecCC-CCC-ceeEEE
Q 020021           43 HKSSSYLVTASDDES---IRLYDVT-----AATCLKTI------NSKKYGVDLVCFTSHPTTVIYSSKN-GWD-ESLRLL  106 (332)
Q Consensus        43 s~dg~~l~tgs~D~t---v~iwd~~-----~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~s~~-g~d-~~v~v~  106 (332)
                      +|+|++++-...++.   -.||-..     .++....+      ..+...+...+|+|+++.+++++.. |.+ .+|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            389999887776654   5667543     33322211      1222356778999999999887643 322 579999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCc--------------EEEEeCCCceE--EEEEEecC----cee
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT--------------VLLWDQRAEKC--QGLLRVQG----RPA  166 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~--------------i~iWd~~~~~~--~~~~~~~~----~~~  166 (332)
                      |+++++.+.. ..+...+..++|+|| +.|+.++.|+.              |.+|++.++..  ...+....    ...
T Consensus       195 dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          195 GVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             ETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             ECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            9999887543 112222357899999 99998887765              88999876542  12222221    234


Q ss_pred             EEEcCCCeEEE-EEeC-----CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC----CCeEEEEEcc
Q 020021          167 AAYDDQGLVFA-VAFG-----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSF  236 (332)
Q Consensus       167 ~~~~~~~~~~~-~~~~-----~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~----dg~i~i~d~~  236 (332)
                      ..+++++..++ .+.+     ..|.+||+..........+.  .+....... ++|+|+.++..+.    ++.|.+||+.
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~  349 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI--PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS  349 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE--CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec--CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            56778875444 3433     38999998653111022222  222233333 4589988887765    3469999988


Q ss_pred             CCe-EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC-CCceEEEecC-CCCCCceEEeCCCeeEEE
Q 020021          237 RGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-SGKEVASWMS-FDTEPPVIKWTPGSLMFV  309 (332)
Q Consensus       237 ~~~-~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~-~~~~v~~l~~sp~~~~l~  309 (332)
                      ++. ....+.  +.+...+..++++ ++..+++...|+..+||.+. +++.+..+.. ....+..++++|++..++
T Consensus       350 ~~~~~~~~l~--~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~  422 (741)
T 1yr2_A          350 GSTPRFDTVV--PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY  422 (741)
T ss_dssp             SSSCEEEEEE--CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred             CCccccEEEe--cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence            742 222222  2233344456776 67788899999987777654 4555565543 345677889999886444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.38  E-value=2.3e-09  Score=95.12  Aligned_cols=225  Identities=14%  Similarity=0.074  Sum_probs=142.3

Q ss_pred             CcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           35 GRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        35 ~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      .-..+..|+|++ .++++...++.|..||..+++.. .+. ....+..+++.+++..++..     +..+.+||..+++.
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-----~~gl~~~d~~~g~~  121 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-----DDGLFLRDTATGVL  121 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-----TTEEEEEETTTCCE
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-----CCCEEEEECCCCcE
Confidence            345688899975 56677778899999999887643 232 23457788899888765543     23488999988775


Q ss_pred             EEEeec----ccccEEEEEecCCCCeEEEeeCC----CcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEE
Q 020021          114 LRYFKG----HHDRVVSLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR  185 (332)
Q Consensus       114 ~~~~~~----h~~~V~~v~~~~~~~~l~s~s~D----g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  185 (332)
                      ......    ....+..+.++|+|+.+++...+    +...+|.+.+++.                             +
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~-----------------------------~  172 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV-----------------------------T  172 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-----------------------------E
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcE-----------------------------E
Confidence            432221    12468899999999876654322    1223332211211                             1


Q ss_pred             EEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEE-EEEcCCCeEEEEEcc--CC-eEe--EEeeecCCCCCcceEEEE
Q 020021          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSF--RG-TLL--STYNVKPVSRNSTLEASF  259 (332)
Q Consensus       186 vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~--~~-~~~--~~~~~~~~~~~~~~~v~~  259 (332)
                      .+.            .   .....+.++++|||+.+ ++.+.++.|.+||..  ++ ...  ..+............+++
T Consensus       173 ~~~------------~---~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~  237 (326)
T 2ghs_A          173 KLF------------A---DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC  237 (326)
T ss_dssp             EEE------------E---EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE
T ss_pred             Eee------------C---CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEE
Confidence            000            0   00123578999999865 455667899999985  55 321  112111112233457899


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeC-CCeeE-EEec
Q 020021          260 SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PGSLM-FVTG  311 (332)
Q Consensus       260 spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~-l~t~  311 (332)
                      +++|+++++...++.|.+||. +++.+..+......+.+++|+ |+++. +++.
T Consensus       238 d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          238 DAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             CTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            999998888767788999998 677777666555568999998 88654 3443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.36  E-value=5.3e-11  Score=107.60  Aligned_cols=175  Identities=17%  Similarity=0.196  Sum_probs=129.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---------eeE-EeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAAT---------CLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      +++.+++++...++++|+.|+ +++|++....         ... ....... |..++|  ++..++.+ .   ++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~---~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-T---RNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-E---SSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-c---CCcEEE
Confidence            689999999999999999985 5669875432         111 1223344 888899  77777777 2   578999


Q ss_pred             EEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEE
Q 020021          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR  185 (332)
Q Consensus       106 ~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  185 (332)
                      ||+.+.........|...|..+.+.+.  .++.++.||++.+||++.+.....                           
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~---------------------------  161 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL---------------------------  161 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE---------------------------
T ss_pred             EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccc---------------------------
Confidence            999877666667778888888776654  388889999999999876543210                           


Q ss_pred             EEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeE--eEEeeec------CCCCCcceEE
Q 020021          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVK------PVSRNSTLEA  257 (332)
Q Consensus       186 vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~------~~~~~~~~~v  257 (332)
                                          ...++++++||+|  ++.+..||++++|+...++.  ..++...      ..+...+.++
T Consensus       162 --------------------~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI  219 (388)
T 1xip_A          162 --------------------AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSV  219 (388)
T ss_dssp             --------------------EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEE
T ss_pred             --------------------cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEE
Confidence                                0247789999999  67889999999999887775  4444211      1245778899


Q ss_pred             EECCCCCEEEEE
Q 020021          258 SFSPEGMFVISG  269 (332)
Q Consensus       258 ~~spdg~~l~sg  269 (332)
                      .|.++++++++-
T Consensus       220 ~wl~~~~flv~y  231 (388)
T 1xip_A          220 TILSPQDFLAVF  231 (388)
T ss_dssp             EESSSSEEEEEE
T ss_pred             EEecCCeEEEEE
Confidence            999999999884

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.30  E-value=1.6e-12  Score=117.74  Aligned_cols=206  Identities=17%  Similarity=0.050  Sum_probs=114.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeeccccc-
Q 020021           45 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-  123 (332)
Q Consensus        45 dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~-  123 (332)
                      ++..+++++.|+.|..||..+|+.+.++..  ..+....+..++..++.++   .|+.++.||.++++.+..+..+... 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s---~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDP---NDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECT---TTCCEEEC-----CCSEECSCCHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeC---CCCEEEEEECCCCceeeeeeccCccc
Confidence            478999999999999999999999887765  3343333444554455433   3789999999998877666544321 


Q ss_pred             EEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEec
Q 020021          124 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG  203 (332)
Q Consensus       124 V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~  203 (332)
                      +.+.....++..+++++.|+.+..||.++++....+....                                        
T Consensus        83 ~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----------------------------------------  122 (369)
T 2hz6_A           83 VQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----------------------------------------  122 (369)
T ss_dssp             HTTCSCC-----CCCCEEEEEEEEECCC----------------------------------------------------
T ss_pred             cccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----------------------------------------
Confidence            1110011145578888899999999998876532221100                                        


Q ss_pred             CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCC---CEEEEEcCCCcEEEEEC
Q 020021          204 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG---MFVISGSGDGSVYAWSV  280 (332)
Q Consensus       204 ~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg---~~l~sgs~Dg~i~vWd~  280 (332)
                             ...++|++..+++++.++.|+.||..+|+.+-.+.....     ...+++++.   ..++.++.||.|+.||.
T Consensus       123 -------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~-----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          123 -------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY-----AASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             -----------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE-----CCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             -------cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc-----cCccccCCccccceEEEECCCCEEEEEEC
Confidence                   012345677788888889999999988876544432110     112233332   45667889999999999


Q ss_pred             CCCceEEEecCCCCCCceEEeCCCeeE
Q 020021          281 RSGKEVASWMSFDTEPPVIKWTPGSLM  307 (332)
Q Consensus       281 ~~~~~~~~~~~~~~~v~~l~~sp~~~~  307 (332)
                      .+++.+.........+....+++++..
T Consensus       191 ~tG~~~W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          191 ESGDVLWIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred             CCCcEEEEecCCCceEEEEEecCCceE
Confidence            999987766533222234456677754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.29  E-value=2.9e-08  Score=85.78  Aligned_cols=233  Identities=7%  Similarity=0.093  Sum_probs=155.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeE-EeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~  110 (332)
                      .+...+.++.++++|+++++...++.|..||.. ++... .+......+..+++.+++...+....   ++.+..+|.. 
T Consensus        59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~~-  133 (300)
T 2qc5_A           59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN---GDRIGKLTAD-  133 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETT---TTEEEEECTT-
T ss_pred             CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccC---CCeEEEECCC-
Confidence            344678999999999988888778999999988 55432 22222345777888887765444321   4678888887 


Q ss_pred             CceEE-EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec----CceeEEEcCCCeEEEEEe-CCEE
Q 020021          111 NKYLR-YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF-GGYI  184 (332)
Q Consensus       111 ~~~~~-~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~i  184 (332)
                      ++... .+......+.++.+.++++..++...++.|..+|. +++... +..+    ......+++++.++.+.. .+.|
T Consensus       134 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i  211 (300)
T 2qc5_A          134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKI  211 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEE
Confidence            55432 23334567899999999997777777889999998 444332 3221    122445666676665554 5689


Q ss_pred             EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC
Q 020021          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (332)
Q Consensus       185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~  264 (332)
                      ..||..    +.+..+........+..++++++|+++++...++.|..+|. +++.. .+... .....+..++++++|+
T Consensus       212 ~~~~~~----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~-~~~~~~~~i~~~~~g~  284 (300)
T 2qc5_A          212 GRITTT----GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ-TENAEPHGITFGKDGS  284 (300)
T ss_dssp             EEECTT----CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC-STTCCCCCEEECTTSC
T ss_pred             EEEcCC----CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC-ccCCccceeEeCCCCC
Confidence            999872    22333333223345678999999998888877899999998 45443 33322 1234567889999999


Q ss_pred             EEEEEcCCCcEEEEEC
Q 020021          265 FVISGSGDGSVYAWSV  280 (332)
Q Consensus       265 ~l~sgs~Dg~i~vWd~  280 (332)
                      .+++.. . .|..+|.
T Consensus       285 l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          285 VWFALK-C-KIGKLNL  298 (300)
T ss_dssp             EEEECS-S-EEEEEEE
T ss_pred             EEEEcc-C-ceEEeCC
Confidence            777665 4 6777765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.25  E-value=1.4e-10  Score=104.77  Aligned_cols=170  Identities=11%  Similarity=0.070  Sum_probs=121.1

Q ss_pred             cEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-----------EEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECcc
Q 020021          123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-----------CQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  191 (332)
Q Consensus       123 ~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~  191 (332)
                      +++.+++++....+++|+.|+. ++|+++..+           ......++......+  ++..++++.++.|++||++.
T Consensus        39 ~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~~~~~l~v~dv~s  115 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVSTRNALYSLDLEE  115 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEEESSEEEEEESSS
T ss_pred             cccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEEcCCcEEEEEchh
Confidence            5788999999999999999855 559854322           112233444334455  66666666889999999987


Q ss_pred             CCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC
Q 020021          192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  271 (332)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~  271 (332)
                      ..... ....   +...+..+.+.+.  .+++++.||.+.+||+..+.... .      ...+.+++|||+|  ++.|..
T Consensus       116 l~~~~-~~~~---~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~------~~~Vs~v~WSpkG--~~vg~~  180 (388)
T 1xip_A          116 LSEFR-TVTS---FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L------AQNVTSFDVTNSQ--LAVLLK  180 (388)
T ss_dssp             TTCEE-EEEE---CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E------EESEEEEEECSSE--EEEEET
T ss_pred             hhccC-ccce---eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c------cCCceEEEEcCCc--eEEEEc
Confidence            65321 1111   2234566666544  38888999999999998777643 1      2467799999999  677889


Q ss_pred             CCcEEEEECCCCce--EEEe------c---CCCCCCceEEeCCCeeEEEe
Q 020021          272 DGSVYAWSVRSGKE--VASW------M---SFDTEPPVIKWTPGSLMFVT  310 (332)
Q Consensus       272 Dg~i~vWd~~~~~~--~~~~------~---~~~~~v~~l~~sp~~~~l~t  310 (332)
                      ||++++|+...++.  ..++      .   .|+..|.+|.|.+++.++++
T Consensus       181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            99999999877664  4445      2   36778899999999998887

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.25  E-value=8e-09  Score=90.21  Aligned_cols=196  Identities=13%  Similarity=0.128  Sum_probs=126.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeec----ccceeEEEEccCCCEEEEecCCCC------Cce
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK----KYGVDLVCFTSHPTTVIYSSKNGW------DES  102 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~s~~g~------d~~  102 (332)
                      +...+.++.++|+|+++++.  +..|.+||..+++........    ...+..+++.+++...+.......      ...
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~  129 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ  129 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred             CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence            34679999999999976654  678999999887654322211    123567889998874443321110      123


Q ss_pred             eEEEEccCCceEEEeecccccEEEEEecCCCCeE-EEeeCCCcEEEEeC--CCceEEEEEEecCceeEEEcCCCeEEEEE
Q 020021          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQ--RAEKCQGLLRVQGRPAAAYDDQGLVFAVA  179 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l-~s~s~Dg~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (332)
                      -.+|.+.....+..+..+....+.++|+|+++.| ++.+.++.|..||+  .++..... +              .    
T Consensus       130 ~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~-~--------------~----  190 (297)
T 3g4e_A          130 GALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR-R--------------S----  190 (297)
T ss_dssp             EEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-E--------------E----
T ss_pred             cEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc-E--------------E----
Confidence            4566554332333344455567899999999865 56677889999986  34432100 0              0    


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~  259 (332)
                            +.++.             ........++++++|.+.++....+.|..||..+|+.+..+..   +...+.+++|
T Consensus       191 ------~~~~~-------------~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~---p~~~~t~~~f  248 (297)
T 3g4e_A          191 ------VYKLE-------------KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL---PVDKTTSCCF  248 (297)
T ss_dssp             ------EEECC-------------GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC---SSSBEEEEEE
T ss_pred             ------EEECC-------------CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC---CCCCceEEEE
Confidence                  00000             0011235688999999988888889999999988998877763   3356788999


Q ss_pred             C-CCCCEEEEEcC
Q 020021          260 S-PEGMFVISGSG  271 (332)
Q Consensus       260 s-pdg~~l~sgs~  271 (332)
                      + ||++.|+.++.
T Consensus       249 ~g~d~~~L~vt~~  261 (297)
T 3g4e_A          249 GGKNYSEMYVTCA  261 (297)
T ss_dssp             ESGGGCEEEEEEB
T ss_pred             eCCCCCEEEEEcC
Confidence            8 88887665554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.22  E-value=7.2e-09  Score=90.54  Aligned_cols=205  Identities=11%  Similarity=0.171  Sum_probs=130.9

Q ss_pred             CCCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeeeEE-eee----cccceeEEEEccCCCEEEEecCCC--------
Q 020021           33 YNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKT-INS----KKYGVDLVCFTSHPTTVIYSSKNG--------   98 (332)
Q Consensus        33 h~~~I~~i~~s~d-g~~l~tgs~D~tv~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~~~s~~g--------   98 (332)
                      +...+.++.++++ |+++++.. +..|.+||.. ++.... ...    ....+..+++.+++...+.....+        
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            5567899999999 76665554 4479999998 665433 221    113467888998886555443210        


Q ss_pred             ----CCceeEEEEccCCceEEEeecccccEEEEEec----CCCCeE-EEeeCCCcEEEEeCC-CceEEEEEEecCceeEE
Q 020021           99 ----WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC----SSKDCF-ISGSLDRTVLLWDQR-AEKCQGLLRVQGRPAAA  168 (332)
Q Consensus        99 ----~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~----~~~~~l-~s~s~Dg~i~iWd~~-~~~~~~~~~~~~~~~~~  168 (332)
                          ..+.+..+|.. ++.. .+..+......++++    ++++.+ ++...++.|.+||.. .++....          
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~----------  214 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK----------  214 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE----------
T ss_pred             cccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc----------
Confidence                01356666655 4433 333444567889999    998654 555678899999864 2221100          


Q ss_pred             EcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCC-CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec
Q 020021          169 YDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI-SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (332)
Q Consensus       169 ~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (332)
                                      +++.            ....+. .....++++++|+++++...++.|.+||..+++.+..+.. 
T Consensus       215 ----------------~~~~------------~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~-  265 (314)
T 1pjx_A          215 ----------------KVWG------------HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-  265 (314)
T ss_dssp             ----------------EEEE------------ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-
T ss_pred             ----------------eEEE------------ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC-
Confidence                            0000            000010 1235688999999999888889999999887776655542 


Q ss_pred             CCCCCcceEEEECCCCCEE-EEEcCCCcEEEEECCC
Q 020021          248 PVSRNSTLEASFSPEGMFV-ISGSGDGSVYAWSVRS  282 (332)
Q Consensus       248 ~~~~~~~~~v~~spdg~~l-~sgs~Dg~i~vWd~~~  282 (332)
                        +...+..++|+|||++| ++...++.|..|++..
T Consensus       266 --~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          266 --PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             --SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             --CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence              33567789999999954 4556678999999865

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.20  E-value=6.5e-09  Score=101.49  Aligned_cols=260  Identities=12%  Similarity=0.106  Sum_probs=163.5

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeec-c----cceeEEEEccCCCEEEEecCC---CCCceeEEEEccCCceEEEe
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSK-K----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYF  117 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~~~~~s~~---g~d~~v~v~d~~~~~~~~~~  117 (332)
                      +..++.++.|+.|..+|..+|+.+-.+... .    ..+...-.. .+..+++++..   +.++.+..+|.++|+.+..+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            567888999999999999999998766542 1    111110000 13345554432   23688999999999988776


Q ss_pred             ecc-------------------------------cccEEEEEecCCCCeEEEeeCCCc-------------------EEE
Q 020021          118 KGH-------------------------------HDRVVSLSLCSSKDCFISGSLDRT-------------------VLL  147 (332)
Q Consensus       118 ~~h-------------------------------~~~V~~v~~~~~~~~l~s~s~Dg~-------------------i~i  147 (332)
                      ..-                               ...-..+.+.++.++++.++.++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            521                               001124677888888888887764                   999


Q ss_pred             EeCCCceEEEEEEecCc---------eeEEEc--CCC----eEEEEEeCCEEEEEECccCCCC------Ce-eEEEe---
Q 020021          148 WDQRAEKCQGLLRVQGR---------PAAAYD--DQG----LVFAVAFGGYIRMFDARKYEKG------PF-DIFSV---  202 (332)
Q Consensus       148 Wd~~~~~~~~~~~~~~~---------~~~~~~--~~~----~~~~~~~~~~i~vwd~~~~~~~------~~-~~~~~---  202 (332)
                      ||.++++.+-.++....         +....+  .++    .++....+|.+.++|.++.+.-      +. -....   
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            99999998877664211         111111  123    2444445789999997654310      00 00000   


Q ss_pred             -----------------------cCCC--CCceeEEEcCCCCEEEEEcC-------------------------------
Q 020021          203 -----------------------GGDI--SDANVVKFSNDGRLMLLTTM-------------------------------  226 (332)
Q Consensus       203 -----------------------~~~~--~~v~~v~~s~dg~~l~~~~~-------------------------------  226 (332)
                                             .+..  ..-..++|+|+..++.+...                               
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  439 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM  439 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence                                   0000  01233688998877766522                               


Q ss_pred             --------------CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC
Q 020021          227 --------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF  292 (332)
Q Consensus       227 --------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~  292 (332)
                                    +|.++.||+.+|+.+-.+....    ....-.++..+..++.|+.||.++.||..+|+.+..+...
T Consensus       440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT----IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC----CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence                          3789999999999875554321    1222356668889999999999999999999999877543


Q ss_pred             CC-CCceEEeCCCeeEEEe
Q 020021          293 DT-EPPVIKWTPGSLMFVT  310 (332)
Q Consensus       293 ~~-~v~~l~~sp~~~~l~t  310 (332)
                      .+ ...-+.|..+|++.+.
T Consensus       516 ~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          516 SGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             SCCCSCCEEEEETTEEEEE
T ss_pred             CCcccCceEEEECCEEEEE
Confidence            32 2245788888875544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=2.8e-09  Score=95.16  Aligned_cols=230  Identities=10%  Similarity=0.013  Sum_probs=147.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeC-----CCcEEEEEcCCCeeeEEeeecc------cceeEEEEccCCCEEEEecCC-CC
Q 020021           32 DYNGRISSMDFHKSSSYLVTASD-----DESIRLYDVTAATCLKTINSKK------YGVDLVCFTSHPTTVIYSSKN-GW   99 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~-----D~tv~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~s~~-g~   99 (332)
                      +|-..+.+|+|+++|+++++-..     +..|.+||+.+++.++.+....      .....+++.+++..++.+... +.
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            45578999999999987766543     6889999999998877765421      234678888766565554321 13


Q ss_pred             CceeEEEEccCCceEEEeecccccEE-EEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCe-EEE
Q 020021          100 DESLRLLSLHDNKYLRYFKGHHDRVV-SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL-VFA  177 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~~~V~-~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  177 (332)
                      ++.|.+||+.+++..+.+.+|..... ...+.+++..+.+.+.|++++.|...            .....+++++. ++.
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~------------~~gia~s~dg~~ly~  211 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG------------VNGIVLDAENEWLYL  211 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCC------------EEEEEECTTSCEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecc------------cceeEeccCCCEEEE
Confidence            67899999998887777766532111 13445567777778888888877531            12345666664 333


Q ss_pred             EEeC-CEEEEEECccCCCC---------CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec
Q 020021          178 VAFG-GYIRMFDARKYEKG---------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (332)
Q Consensus       178 ~~~~-~~i~vwd~~~~~~~---------~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (332)
                      .... ..+..++.......         .+...   ++......++++++|.++++...++.|.+||..+++...... .
T Consensus       212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~  287 (343)
T 2qe8_A          212 SPMHSTSMYRIKSADLSNLQLTDAELGSKIERY---SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-D  287 (343)
T ss_dssp             EESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE---EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-C
T ss_pred             EeCCCCeEEEEEHHHhcCCCCChhhhhcceEec---ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-C
Confidence            3333 35555553211110         11111   112235678999999999999999999999985676533322 1


Q ss_pred             CCCCCcceEEEECCCCCEEEEEcCCCcEEEE
Q 020021          248 PVSRNSTLEASFSPEGMFVISGSGDGSVYAW  278 (332)
Q Consensus       248 ~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vW  278 (332)
                      + .......++|+++|+++++.+..+.+.+|
T Consensus       288 ~-~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          288 E-KLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             G-GGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             C-ceecCCeeEECCCCcEEEEeCcccccccc
Confidence            1 12446689999999988887755544444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.15  E-value=1.5e-08  Score=98.74  Aligned_cols=258  Identities=10%  Similarity=0.080  Sum_probs=164.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeec-c----cceeEEEEccCCCEEEEecCC---CCCceeEEEEccCCceEEEe
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSK-K----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYF  117 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~~~~~s~~---g~d~~v~v~d~~~~~~~~~~  117 (332)
                      +..|+.++.|+.|..+|..+|+.+-.+... .    ..+...-.. .+..++.++..   +.++.|+.+|.++|+.+..+
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            568888999999999999999998777654 2    111110001 23455555432   13688999999999988776


Q ss_pred             eccccc--------------------------------EEEEEecCCCCeEEEeeCCC-------------------cEE
Q 020021          118 KGHHDR--------------------------------VVSLSLCSSKDCFISGSLDR-------------------TVL  146 (332)
Q Consensus       118 ~~h~~~--------------------------------V~~v~~~~~~~~l~s~s~Dg-------------------~i~  146 (332)
                      ......                                ...+.+.++++.++.+..++                   +|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            532111                                12467788888888776654                   599


Q ss_pred             EEeCCCceEEEEEEecCce---------eEEEc--CCC----eEEEEEeCCEEEEEECccCCCCCeeEEEecC-------
Q 020021          147 LWDQRAEKCQGLLRVQGRP---------AAAYD--DQG----LVFAVAFGGYIRMFDARKYEKGPFDIFSVGG-------  204 (332)
Q Consensus       147 iWd~~~~~~~~~~~~~~~~---------~~~~~--~~~----~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~-------  204 (332)
                      .+|.++++..-.++.....         -....  .++    .++....+|.+.++|.++.+.  +-......       
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~~~~~~  364 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF--ISAKNFVPVNWASGY  364 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCSSEEEE
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE--eccccccccCccccc
Confidence            9999999988777653210         11111  123    344444578999999765431  10111000       


Q ss_pred             ------------------------CC--CCceeEEEcCCCCEEEEEcC--------------------------------
Q 020021          205 ------------------------DI--SDANVVKFSNDGRLMLLTTM--------------------------------  226 (332)
Q Consensus       205 ------------------------~~--~~v~~v~~s~dg~~l~~~~~--------------------------------  226 (332)
                                              ..  ..-..++|+|++.++.+...                                
T Consensus       365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  444 (677)
T 1kb0_A          365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK  444 (677)
T ss_dssp             CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred             CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence                                    00  01125789998887776543                                


Q ss_pred             -----------CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC-C
Q 020021          227 -----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD-T  294 (332)
Q Consensus       227 -----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~-~  294 (332)
                                 .|.|..||+.+|+.+-.+...    .......+++++..++.++.||.+++||..+++.+..+.... .
T Consensus       445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~  520 (677)
T 1kb0_A          445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV  520 (677)
T ss_dssp             EECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ccccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCc
Confidence                       278999999999987555432    122334566788899999999999999999999998875433 2


Q ss_pred             CCceEEeCCCeeEEEe
Q 020021          295 EPPVIKWTPGSLMFVT  310 (332)
Q Consensus       295 ~v~~l~~sp~~~~l~t  310 (332)
                      ...-+.|.++|++++.
T Consensus       521 ~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          521 VAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CSCCEEEEETTEEEEE
T ss_pred             ccCCEEEEeCCEEEEE
Confidence            3345777788865543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.14  E-value=6.8e-09  Score=90.97  Aligned_cols=203  Identities=16%  Similarity=0.164  Sum_probs=132.8

Q ss_pred             EEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEec-C-ceeEEEcCCCeEEEEEe-CCEEEEEEC
Q 020021          114 LRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ-G-RPAAAYDDQGLVFAVAF-GGYIRMFDA  189 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~i~vwd~  189 (332)
                      +..+..+.....+..|+++++ .+++...++.|..|+.. +.. ..+... . .....+++++.++.+.. ++.|..|+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            344445556677889999998 67788888999999974 443 233222 2 23456777888776665 478999986


Q ss_pred             ccCCCCCeeEEE--ecC-CCCCceeEEEcCCCCEEEE----EcC-------------CCeEEEEEccCCeEeEEeeecCC
Q 020021          190 RKYEKGPFDIFS--VGG-DISDANVVKFSNDGRLMLL----TTM-------------EGHIHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       190 ~~~~~~~~~~~~--~~~-~~~~v~~v~~s~dg~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~  249 (332)
                      .    +.+..+.  ..+ ....++.++++|+|+++++    +..             .+.|+.+|..+++......    
T Consensus       115 ~----g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~----  186 (305)
T 3dr2_A          115 D----GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD----  186 (305)
T ss_dssp             T----SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE----
T ss_pred             C----CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEec----
Confidence            3    2222221  111 1134678999999998886    332             3578888876665433221    


Q ss_pred             CCCcceEEEECCCCCEEEEEcCC------CcEEEEECCCCceEE---Ee-cCCCCCCceEEeCCCeeEEEeccceEEEec
Q 020021          250 SRNSTLEASFSPEGMFVISGSGD------GSVYAWSVRSGKEVA---SW-MSFDTEPPVIKWTPGSLMFVTGSSELSFWI  319 (332)
Q Consensus       250 ~~~~~~~v~~spdg~~l~sgs~D------g~i~vWd~~~~~~~~---~~-~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~  319 (332)
                       ......++|+||++.|+.+...      +.|++|++..+. +.   .+ ......+..+++.++|++.++....+.+|+
T Consensus       187 -~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~  264 (305)
T 3dr2_A          187 -LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFD  264 (305)
T ss_dssp             -ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEEC
T ss_pred             -CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEEC
Confidence             1234568999999988777665      689999987543 22   11 112344677999999998887766688899


Q ss_pred             ccccccccc
Q 020021          320 PDLSKLGAY  328 (332)
Q Consensus       320 ~~~~~~~~~  328 (332)
                      ++.+.++.+
T Consensus       265 ~~g~~~~~~  273 (305)
T 3dr2_A          265 SDGQLLGHI  273 (305)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCCEEEEE
Confidence            877666554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.12  E-value=6.2e-07  Score=81.97  Aligned_cols=202  Identities=8%  Similarity=-0.021  Sum_probs=127.6

Q ss_pred             cccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEE-eCC--EEEEEECccCCCCCe
Q 020021          121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA-FGG--YIRMFDARKYEKGPF  197 (332)
Q Consensus       121 ~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~i~vwd~~~~~~~~~  197 (332)
                      -.....++|+++++.+++...++.|+.||..++...........+...+++++..+.++ .++  .|.+++......  .
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~--~  207 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWA--P  207 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--E
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCce--e
Confidence            34678999999999888888889999999988776554433222335667766544444 433  788888653221  1


Q ss_pred             eEE-Ee-cCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEEccCCeEeEEeee--cCCCCCcc-e-EEEECCC-CCEEEEE
Q 020021          198 DIF-SV-GGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNV--KPVSRNST-L-EASFSPE-GMFVISG  269 (332)
Q Consensus       198 ~~~-~~-~~~~~~v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~-~-~v~~spd-g~~l~sg  269 (332)
                      ... .. .........++++| +|.+++ +..++.|+.||..++... .+..  ........ . .++|+|+ ++++++-
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            111 11 11234567899999 566555 667889999998876532 2210  11111122 2 8999994 7777777


Q ss_pred             cCCCcEEEEECCCCceEEEecCCC---------------CCCceEEeCCCeeEEEecc-ce--EEEecccccccccc
Q 020021          270 SGDGSVYAWSVRSGKEVASWMSFD---------------TEPPVIKWTPGSLMFVTGS-SE--LSFWIPDLSKLGAY  328 (332)
Q Consensus       270 s~Dg~i~vWd~~~~~~~~~~~~~~---------------~~v~~l~~sp~~~~l~t~~-~d--~~~w~~~~~~~~~~  328 (332)
                      ..++.|+.|+... + +..+..+.               ..+..++|+|+++++++.. ..  ++.|++....+..+
T Consensus       286 ~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~  360 (409)
T 3hrp_A          286 QNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV  360 (409)
T ss_dssp             TTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE
Confidence            7889999999753 3 33333221               2357899999999888866 44  66677433344333

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.11  E-value=1.7e-08  Score=86.25  Aligned_cols=215  Identities=9%  Similarity=0.041  Sum_probs=144.3

Q ss_pred             cccceeEeccCCC--cEEEEEECCCCCEEEEEeC--CCcEEEEEcCCCeeeEEeeeccc-ceeEEEEccCCCEEEEecCC
Q 020021           23 SMEVGMSFRDYNG--RISSMDFHKSSSYLVTASD--DESIRLYDVTAATCLKTINSKKY-GVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        23 ~~~~~~~l~~h~~--~I~~i~~s~dg~~l~tgs~--D~tv~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~s~~   97 (332)
                      +.+.++++. |..  ....+.|++|+.+.++.+.  +.+|++.|+.+++.+.++.-... ....+++  ++..++.+.. 
T Consensus         8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~-   83 (266)
T 2iwa_A            8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVW-   83 (266)
T ss_dssp             EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEET-
T ss_pred             CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEe-
Confidence            455666664 443  3689999998866666654  68999999999999988753221 2223444  3556666643 


Q ss_pred             CCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEE
Q 020021           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  177 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (332)
                       .++.+.++|.++.+.+.++.--...  ...+++|+++++.+..+++|.+.|.++.+....+.....             
T Consensus        84 -~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-------------  147 (266)
T 2iwa_A           84 -LKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-------------  147 (266)
T ss_dssp             -TCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-------------
T ss_pred             -cCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-------------
Confidence             4789999999999888877522111  233566777666666788999999988765544432110             


Q ss_pred             EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC--------
Q 020021          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--------  249 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------  249 (332)
                          +              .       .....+.+.+. +|+.++....++.|.+.|..+++.+..+.....        
T Consensus       148 ----~--------------~-------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~  201 (266)
T 2iwa_A          148 ----G--------------H-------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEG  201 (266)
T ss_dssp             ----T--------------E-------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTT
T ss_pred             ----C--------------c-------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccc
Confidence                0              0       00123456666 787777777889999999999999888865311        


Q ss_pred             --CCCcceEEEECCCCC-EEEEEcCCCcEEEEECCCC
Q 020021          250 --SRNSTLEASFSPEGM-FVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       250 --~~~~~~~v~~spdg~-~l~sgs~Dg~i~vWd~~~~  283 (332)
                        .......++|+|+++ +++++.....+++.++.+.
T Consensus       202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence              012346799999975 6666667788998888654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.11  E-value=2.4e-08  Score=97.27  Aligned_cols=267  Identities=15%  Similarity=0.102  Sum_probs=161.5

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccc----------e-eEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYG----------V-DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      +..|..++.++.|.-+|..+|+.+-.+......          + ..+++  .+..++.++.   |+.+..+|.++|+.+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~---dg~l~alD~~tG~~~  151 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW---DGRLIALDAATGKEV  151 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT---TSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC---CCEEEEEECCCCCEE
Confidence            567777888999999999999998776543210          0 11222  3456666643   788999999999998


Q ss_pred             EEeecc-c----ccEEEEEecCCCCeEEEeeC------CCcEEEEeCCCceEEEEEEecCc-------------------
Q 020021          115 RYFKGH-H----DRVVSLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQGR-------------------  164 (332)
Q Consensus       115 ~~~~~h-~----~~V~~v~~~~~~~~l~s~s~------Dg~i~iWd~~~~~~~~~~~~~~~-------------------  164 (332)
                      ..+..+ .    ..+.+.-.- .+..++.++.      |+.|..+|.++++.+-.+.....                   
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~  230 (677)
T 1kb0_A          152 WHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD  230 (677)
T ss_dssp             EEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred             eeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence            887755 1    122211111 2344554443      79999999999988766543211                   


Q ss_pred             ---------------eeEEEcCCC-eEEEEEeCC-------------------EEEEEECccCCCCCeeEEEecCC----
Q 020021          165 ---------------PAAAYDDQG-LVFAVAFGG-------------------YIRMFDARKYEKGPFDIFSVGGD----  205 (332)
Q Consensus       165 ---------------~~~~~~~~~-~~~~~~~~~-------------------~i~vwd~~~~~~~~~~~~~~~~~----  205 (332)
                                     ....+++.. .++....++                   .|..+|.++.+.  .-.+....+    
T Consensus       231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~--~W~~~~~~~d~wd  308 (677)
T 1kb0_A          231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY--KWHYQETPGDNWD  308 (677)
T ss_dssp             GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEESSTTCCSC
T ss_pred             ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE--EEEEecCCCcccc
Confidence                           123455544 344333232                   478888765421  112222222    


Q ss_pred             ---CCCceeEEEcCCC---CEEEEEcCCCeEEEEEccCCeEeEEeeecCCC--------CCc------------------
Q 020021          206 ---ISDANVVKFSNDG---RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS--------RNS------------------  253 (332)
Q Consensus       206 ---~~~v~~v~~s~dg---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~------------------  253 (332)
                         ......+....+|   ..++.++.+|.++++|..+|+++-.+...+..        ..+                  
T Consensus       309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~  388 (677)
T 1kb0_A          309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG  388 (677)
T ss_dssp             CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred             cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence               1122333444578   67889999999999999999988665432111        000                  


Q ss_pred             ------ceEEEECCCCCEEEEEcC-------------------------------------------CCcEEEEECCCCc
Q 020021          254 ------TLEASFSPEGMFVISGSG-------------------------------------------DGSVYAWSVRSGK  284 (332)
Q Consensus       254 ------~~~v~~spdg~~l~sgs~-------------------------------------------Dg~i~vWd~~~~~  284 (332)
                            -..++|+|++..++....                                           .|.|+.||+.+++
T Consensus       389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~  468 (677)
T 1kb0_A          389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK  468 (677)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred             cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence                  014689999888877643                                           2789999999999


Q ss_pred             eEEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccc
Q 020021          285 EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       285 ~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~  321 (332)
                      .+..... ..++....+.+++.++..++.|  +..|+..
T Consensus       469 ~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          469 AAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             EEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             EEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence            8776543 3334444455555555555544  6666653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.10  E-value=1.3e-07  Score=85.04  Aligned_cols=260  Identities=9%  Similarity=0.021  Sum_probs=151.4

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecc---------cceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKK---------YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY  116 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~  116 (332)
                      +..+..++.++.|..+|..+|+.+-.+....         ..+. ......+..++.++.   ++.+..+|.++++.+..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~~~---~g~l~a~d~~tG~~~W~  128 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLS-GGVTVSGGHVYIGSE---KAQVYALNTSDGTVAWQ  128 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEE-EEEEEETTEEEEEET---TSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccc-cCceEeCCEEEEEcC---CCEEEEEECCCCCEEEE
Confidence            5688888899999999999999886655421         1121 122223455666543   67899999999998766


Q ss_pred             eecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-------eEEEcCCCeEEEEEeCCEEEEEEC
Q 020021          117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-------AAAYDDQGLVFAVAFGGYIRMFDA  189 (332)
Q Consensus       117 ~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~vwd~  189 (332)
                      .............  .+..++.++.++.+..+|.++++...........       .... .++.++.+..++.+..+|.
T Consensus       129 ~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          129 TKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT-AFGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             EECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE-ETTEEEECCTTTEEEEEET
T ss_pred             EeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE-ECCEEEEEcCCCEEEEEEC
Confidence            6543221111111  2457888889999999999998876655443211       1111 2455665556788999997


Q ss_pred             ccCCCCCeeEEEecCCCC-----CceeEEEcC--CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          190 RKYEKGPFDIFSVGGDIS-----DANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~-----~v~~v~~s~--dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      .+.+.  .-.........     .+..+..+|  .+..+..++.++.+..+|..+|+.+-....     .......  .+
T Consensus       206 ~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-----~~~~~~~--~~  276 (376)
T 3q7m_A          206 EQGQM--IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-----GSVNDFI--VD  276 (376)
T ss_dssp             TTCCE--EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-----CCEEEEE--EE
T ss_pred             CCCcE--EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-----CCCCCce--EE
Confidence            65321  11111111000     000000111  245566777899999999999987654432     1122222  35


Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEecCC-CCCCceEEeCCCeeEEEec-cceEEEecccc
Q 020021          263 GMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGSLMFVTG-SSELSFWIPDL  322 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~t~-~~d~~~w~~~~  322 (332)
                      +..++.++.++.++.+|..+++.+...... .......... ++.+++.. ...+..+++..
T Consensus       277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCC
Confidence            677778888999999999999987665422 2222233332 33333332 23366666543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.09  E-value=1.7e-08  Score=98.74  Aligned_cols=219  Identities=13%  Similarity=0.141  Sum_probs=134.2

Q ss_pred             cceeEEEEccCCCEEEEecCC-CC-CceeEEEEccCCceEEEeecccccE--EEEEecCCCCeEEEeeCCCc--------
Q 020021           77 YGVDLVCFTSHPTTVIYSSKN-GW-DESLRLLSLHDNKYLRYFKGHHDRV--VSLSLCSSKDCFISGSLDRT--------  144 (332)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~s~~-g~-d~~v~v~d~~~~~~~~~~~~h~~~V--~~v~~~~~~~~l~s~s~Dg~--------  144 (332)
                      ..+..++|+|+++.++++... |. ..+|+++|+++++.+..   +...+  ..++|+ |++.|+.++.|..        
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            356778999999998876532 32 26899999999986543   22333  578899 9999999988854        


Q ss_pred             -----EEEEeCCCceE--EEEEEecC-----ceeEEEcCCCeEEEEEe-----CCEEEEEECccCCCCCeeEEEecCCCC
Q 020021          145 -----VLLWDQRAEKC--QGLLRVQG-----RPAAAYDDQGLVFAVAF-----GGYIRMFDARKYEKGPFDIFSVGGDIS  207 (332)
Q Consensus       145 -----i~iWd~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~-----~~~i~vwd~~~~~~~~~~~~~~~~~~~  207 (332)
                           |++|++.++..  ...+....     .....+++++..+....     .+.|.++|+..... ....+.  .+..
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~-~~~~l~--~~~~  281 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA-PLLTVQ--GDLD  281 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-CCEEEE--CSSS
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-ceEEEe--CCCC
Confidence                 99999876542  12222222     22455677776544332     25899999865432 222222  2222


Q ss_pred             CceeEEEcCCCCEEEEEc-C---CCeEEEEEccCCeE--eEEeeecCCCCCcceEEEECCCCCEEEEEcCCC---cEEEE
Q 020021          208 DANVVKFSNDGRLMLLTT-M---EGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAW  278 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~~-~---dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg---~i~vW  278 (332)
                      ..... ++++|..++..+ .   .+.|..+|+.++..  ...+.  + +...+.  .|+|++++|+....++   .|++|
T Consensus       282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~-~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--P-ERQQVL--TVHSGSGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--C-CCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--c-CCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence            23333 667766555443 3   36899999887653  22332  1 222233  8999999888776544   78999


Q ss_pred             ECCCCceEEEec-CCCCCCceEEeCCCeeEEE
Q 020021          279 SVRSGKEVASWM-SFDTEPPVIKWTPGSLMFV  309 (332)
Q Consensus       279 d~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~  309 (332)
                      |+..+ ....+. ...+.+..++++|++..+.
T Consensus       356 d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~  386 (693)
T 3iuj_A          356 DYEGK-RVREVALPGLGSVSGFNGKHDDPALY  386 (693)
T ss_dssp             CTTSC-EEEEECCSSSSEEEECCCCTTCSCEE
T ss_pred             ECCCC-eeEEeecCCCceEEeeecCCCCCEEE
Confidence            98744 444442 2334455677788875443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.09  E-value=2.8e-07  Score=83.95  Aligned_cols=222  Identities=11%  Similarity=0.100  Sum_probs=139.0

Q ss_pred             cCCCEEEEecCCCCCceeEEEEccCC----ceEEEee-------cccccEEEEEecCCCCeEEEeeCC------CcEEEE
Q 020021           86 SHPTTVIYSSKNGWDESLRLLSLHDN----KYLRYFK-------GHHDRVVSLSLCSSKDCFISGSLD------RTVLLW  148 (332)
Q Consensus        86 ~~~~~~~~~s~~g~d~~v~v~d~~~~----~~~~~~~-------~h~~~V~~v~~~~~~~~l~s~s~D------g~i~iW  148 (332)
                      .+.++++..+.  .++.|.+.|+++.    +..+++.       .-...-..+...|+| .++|+..+      +.+.+.
T Consensus        93 ~~r~~l~v~~l--~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGL--RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBT--TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccC--CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEE
Confidence            55667776653  3688999999765    4555552       011234567788999 77877666      789999


Q ss_pred             eCCCceEEEEEEecCce-----eEEEcCCCeEEEEEe--------------------CCEEEEEECccCCCCCeeEEEec
Q 020021          149 DQRAEKCQGLLRVQGRP-----AAAYDDQGLVFAVAF--------------------GGYIRMFDARKYEKGPFDIFSVG  203 (332)
Q Consensus       149 d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--------------------~~~i~vwd~~~~~~~~~~~~~~~  203 (332)
                      |.++.+.+........+     ..-+++++.++.++.                    +++|.+||+...+  ....+.++
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg  247 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLG  247 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESC
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecC
Confidence            99998888777543222     144566666555553                    6899999997531  22233332


Q ss_pred             CCCCCceeEEE--cCCCCEEEEEc------CCCeEEEEEccCCeEeE--EeeecCC------C---------CCcceEEE
Q 020021          204 GDISDANVVKF--SNDGRLMLLTT------MEGHIHVLDSFRGTLLS--TYNVKPV------S---------RNSTLEAS  258 (332)
Q Consensus       204 ~~~~~v~~v~~--s~dg~~l~~~~------~dg~i~i~d~~~~~~~~--~~~~~~~------~---------~~~~~~v~  258 (332)
                      ..-.....+.|  +|+|+++.++.      .+++|.+|....++...  .+.....      .         .+....+.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence            11112334445  99998876665      56788877665553221  1111110      0         13456789


Q ss_pred             ECCCCCEEEEEcC-CCcEEEEECCCC---ceEEEecCC--------------CCCCceEEeCCCeeEEEecc
Q 020021          259 FSPEGMFVISGSG-DGSVYAWSVRSG---KEVASWMSF--------------DTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       259 ~spdg~~l~sgs~-Dg~i~vWd~~~~---~~~~~~~~~--------------~~~v~~l~~sp~~~~l~t~~  312 (332)
                      +||||++|+.+.. .+.|.++|+.+.   +.+..+..-              ......+.++|||++|..+.
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999999988754 679999998632   344443221              01367899999998766554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.08  E-value=4e-08  Score=83.21  Aligned_cols=203  Identities=11%  Similarity=0.116  Sum_probs=136.1

Q ss_pred             hcccceeEeccCCCc--EEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC
Q 020021           22 QSMEVGMSFRDYNGR--ISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~--I~~i~~s~dg~~l~tgs~D~--tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~   97 (332)
                      ...+.++++. |...  ...|.|+ ++.++.+.+.++  +|+.+|+.+++.++.+.... ......+.+.+..++...  
T Consensus        29 ~~~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~lt--  103 (262)
T 3nol_A           29 YDYQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLT--  103 (262)
T ss_dssp             EEEEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEE--
T ss_pred             cceEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEE--
Confidence            4566777784 4433  5789998 677888888876  99999999999998876533 222222333455666553  


Q ss_pred             CCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEE
Q 020021           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  177 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (332)
                      ..++.+.++|.++.+.+.++.--.   .+..++++++.|+....+..|.++|.++.+....+....              
T Consensus       104 w~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~--------------  166 (262)
T 3nol_A          104 WKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA--------------  166 (262)
T ss_dssp             SSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE--------------
T ss_pred             eeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc--------------
Confidence            347899999999999888876422   223344667766666567889999998877655543210              


Q ss_pred             EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC-------
Q 020021          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS-------  250 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------  250 (332)
                         ++            .         ....++.+.+. +|++++..-.++.|.++|..+|+++..+......       
T Consensus       167 ---~g------------~---------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~  221 (262)
T 3nol_A          167 ---HG------------E---------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLP  221 (262)
T ss_dssp             ---TT------------E---------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCC
T ss_pred             ---CC------------c---------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccccc
Confidence               00            0         00123345554 7888877778889999999999999888753211       


Q ss_pred             --CCcceEEEECCCCCEEEEEcC
Q 020021          251 --RNSTLEASFSPEGMFVISGSG  271 (332)
Q Consensus       251 --~~~~~~v~~spdg~~l~sgs~  271 (332)
                        ....+.+||+|+++.|+..+.
T Consensus       222 ~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          222 SPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SSCCCEEEEEEETTTTEEEEEET
T ss_pred             CcCCceEEEEEcCCCCEEEEECC
Confidence              123467999998776666654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.08  E-value=3.8e-07  Score=82.02  Aligned_cols=228  Identities=14%  Similarity=0.105  Sum_probs=141.2

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccE
Q 020021           45 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV  124 (332)
Q Consensus        45 dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V  124 (332)
                      ++..+..++.|+.|..+|..+|+.+...............  .+..++.++.   ++.+..+|.++++.+..........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~---~g~l~~~d~~tG~~~W~~~~~~~~~  176 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTS---NGQLQALNEADGAVKWTVNLDMPSL  176 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECT---TSEEEEEETTTCCEEEEEECCC---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcC---CCeEEEEECCCCcEEEEEeCCCCce
Confidence            3567778889999999999999988666543221111111  1335555543   6789999999998877665432211


Q ss_pred             -----EEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce------------eEEEcCCCeEEEEEeCCEEEEE
Q 020021          125 -----VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP------------AAAYDDQGLVFAVAFGGYIRMF  187 (332)
Q Consensus       125 -----~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~i~vw  187 (332)
                           .....  .+..++.++.++.+..+|.++++...........            ......++.++.++.++.+..+
T Consensus       177 ~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~  254 (376)
T 3q7m_A          177 SLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL  254 (376)
T ss_dssp             --CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred             eecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence                 11111  2457788888999999999988876555432110            0011124566666678899999


Q ss_pred             ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEE
Q 020021          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (332)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~  267 (332)
                      |.++.+.    .+...  ........  .++..+..++.++.+..+|..+|+.+-.....  ..........  .+..|+
T Consensus       255 d~~tG~~----~w~~~--~~~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~--~~~~l~  322 (376)
T 3q7m_A          255 DLRSGQI----MWKRE--LGSVNDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDL--LHRLLTSPVL--YNGNLV  322 (376)
T ss_dssp             ETTTCCE----EEEEC--CCCEEEEE--EETTEEEEEETTCCEEEEETTTCCEEEEECTT--TTSCCCCCEE--ETTEEE
T ss_pred             ECCCCcE----Eeecc--CCCCCCce--EECCEEEEEcCCCeEEEEECCCCcEEEeeccc--CCCcccCCEE--ECCEEE
Confidence            9865421    12211  11222222  34566777778999999999999876544311  1111111122  356788


Q ss_pred             EEcCCCcEEEEECCCCceEEEecC
Q 020021          268 SGSGDGSVYAWSVRSGKEVASWMS  291 (332)
Q Consensus       268 sgs~Dg~i~vWd~~~~~~~~~~~~  291 (332)
                      .++.+|.++++|..+++.+.....
T Consensus       323 v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          323 VGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEeCCCeEEEEECCCCcEEEEEec
Confidence            888999999999999998776654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.03  E-value=4.4e-07  Score=82.66  Aligned_cols=223  Identities=13%  Similarity=0.130  Sum_probs=138.7

Q ss_pred             CCCCEE-EEEeCCCcEEEEEcCCC----eeeEEeee-------cccceeEEEEccCCCEEEEecCC---CCCceeEEEEc
Q 020021           44 KSSSYL-VTASDDESIRLYDVTAA----TCLKTINS-------KKYGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSL  108 (332)
Q Consensus        44 ~dg~~l-~tgs~D~tv~iwd~~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~s~~---g~d~~v~v~d~  108 (332)
                      +++++| +++..+.+|.++|+.+.    +..++++.       .....+-+.+.|++ .++++..+   +..+.+.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            777665 66778899999999755    55566631       11123446677888 33332211   12368999999


Q ss_pred             cCCceEEEeec--cc-ccEEEEEecCCCCeEEEee-------------------CCCcEEEEeCCCceEEEEEEecC---
Q 020021          109 HDNKYLRYFKG--HH-DRVVSLSLCSSKDCFISGS-------------------LDRTVLLWDQRAEKCQGLLRVQG---  163 (332)
Q Consensus       109 ~~~~~~~~~~~--h~-~~V~~v~~~~~~~~l~s~s-------------------~Dg~i~iWd~~~~~~~~~~~~~~---  163 (332)
                      ++++.+..+.-  .. ..-..+-|+|+++.++|..                   .+.+|.+||+.+++....+.+..   
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            99998888762  22 1123467799999999886                   36899999999888777776631   


Q ss_pred             cee-E--EEcCCCeEEE--EE-----eCCEEEEEECccCCCCCeeE---EEecCC----------------CCCceeEEE
Q 020021          164 RPA-A--AYDDQGLVFA--VA-----FGGYIRMFDARKYEKGPFDI---FSVGGD----------------ISDANVVKF  214 (332)
Q Consensus       164 ~~~-~--~~~~~~~~~~--~~-----~~~~i~vwd~~~~~~~~~~~---~~~~~~----------------~~~v~~v~~  214 (332)
                      .+. .  .+++++.++.  ..     .+++|.+|....   +.+..   +.+...                ......+.+
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~---g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED---GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET---TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC---CceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence            111 1  2367664333  33     446776654432   11111   101100                124577899


Q ss_pred             cCCCCEEEEE-cCCCeEEEEEcc---CCeEeEEeeecCC---------C--CCcceEEEECCCCCEEEEEc
Q 020021          215 SNDGRLMLLT-TMEGHIHVLDSF---RGTLLSTYNVKPV---------S--RNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       215 s~dg~~l~~~-~~dg~i~i~d~~---~~~~~~~~~~~~~---------~--~~~~~~v~~spdg~~l~sgs  270 (332)
                      |+||++|.++ -..+.|.+||+.   +.+++........         .  ......+++||||++|+.+.
T Consensus       329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999877555 567899999975   3355554443210         0  01235689999999999987

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.02  E-value=4.3e-08  Score=83.05  Aligned_cols=205  Identities=10%  Similarity=0.078  Sum_probs=135.6

Q ss_pred             HHHHhcccceeEeccCCCc--EEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEec
Q 020021           18 EEILQSMEVGMSFRDYNGR--ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        18 ~~~~~~~~~~~~l~~h~~~--I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      +++....+.++++. |...  ...|.|+. +.+..+.+.++.|+++|+.+++.++.+ -.. ........+.+..++...
T Consensus        37 ~~~~~~~~Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~lt  112 (268)
T 3nok_A           37 EPVRRVAHIIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLT  112 (268)
T ss_dssp             CCEEEEEEEEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEE
T ss_pred             CccccceEEEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEE
Confidence            44555567777774 4433  57899984 677889999999999999999998887 322 222222333555665553


Q ss_pred             CCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeE
Q 020021           96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  175 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (332)
                        ..++.+.++|.++.+.+.++.-- ..-+++  +++++.|+.+..++.|.++|.++.+....+.....           
T Consensus       113 --w~~~~v~V~D~~Tl~~~~ti~~~-~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-----------  176 (268)
T 3nok_A          113 --WTEGLLFTWSGMPPQRERTTRYS-GEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-----------  176 (268)
T ss_dssp             --SSSCEEEEEETTTTEEEEEEECS-SCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEET-----------
T ss_pred             --ccCCEEEEEECCcCcEEEEEeCC-CceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-----------
Confidence              34789999999999988887642 222334  45677777666788999999988776555432110           


Q ss_pred             EEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC------
Q 020021          176 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV------  249 (332)
Q Consensus       176 ~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------  249 (332)
                            +              .       ....++.+.+. +|++++..-.++.|.+.|..+|+++..+.....      
T Consensus       177 ------g--------------~-------~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~  228 (268)
T 3nok_A          177 ------G--------------Q-------PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAG  228 (268)
T ss_dssp             ------T--------------E-------ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTT
T ss_pred             ------C--------------c-------ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccc
Confidence                  0              0       00123445555 788777777888999999999999988765311      


Q ss_pred             ----CCCcceEEEECCCCCEEEEEc
Q 020021          250 ----SRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       250 ----~~~~~~~v~~spdg~~l~sgs  270 (332)
                          .....+.+|++|+++.|+..+
T Consensus       229 ~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          229 QVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cccCcCCceEEEEEcCCCCEEEEeC
Confidence                112446799999765444443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.02  E-value=1.5e-08  Score=91.19  Aligned_cols=213  Identities=8%  Similarity=-0.121  Sum_probs=133.2

Q ss_pred             eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEee----------CCCcEEEEeCCCceEEEEEEec---------
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS----------LDRTVLLWDQRAEKCQGLLRVQ---------  162 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s----------~Dg~i~iWd~~~~~~~~~~~~~---------  162 (332)
                      ++.+.|..+++.+..+..-..+  .+.++||+++++.+.          .+++|.+||..+.+....+..+         
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999999888765566  799999999887775          4789999999999998888764         


Q ss_pred             CceeEEEcCCCeEEEEEe---CCEEEE--EECccCCCCCeeEEEecCC-----CCCceeEEE------------------
Q 020021          163 GRPAAAYDDQGLVFAVAF---GGYIRM--FDARKYEKGPFDIFSVGGD-----ISDANVVKF------------------  214 (332)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~---~~~i~v--wd~~~~~~~~~~~~~~~~~-----~~~v~~v~~------------------  214 (332)
                      ......+++++..+.++.   .+.+.+  +|...     .......+.     ...-..+++                  
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-----DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-----EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-----ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence            123567788886665553   357888  88754     001111000     000000111                  


Q ss_pred             -------------------cCCCCEEEEEcCCCeEEEEEccCCe--EeEEeeecC-----C--CCCcceEEEECCCCCEE
Q 020021          215 -------------------SNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKP-----V--SRNSTLEASFSPEGMFV  266 (332)
Q Consensus       215 -------------------s~dg~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-----~--~~~~~~~v~~spdg~~l  266 (332)
                                         ++++..++..+. +.+.+.|.....  .+..+....     .  .......++|+||++.+
T Consensus       200 ~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~l  278 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI  278 (368)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             CeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEE
Confidence                               333443344444 677777765432  222221100     0  00011126899999888


Q ss_pred             EEEcC---------CCcEEEEECCCCceEEEecCCCCCCceEEeCCCee-EEEecc---ceEEEeccccc
Q 020021          267 ISGSG---------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS---SELSFWIPDLS  323 (332)
Q Consensus       267 ~sgs~---------Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~t~~---~d~~~w~~~~~  323 (332)
                      +.+..         ++.+.++|+.+.+.+..+.... ....|+|+||++ ++++..   .++.+++....
T Consensus       279 yV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             EEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            86532         2356699999998888765433 578999999996 455543   45888887543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.00  E-value=1.6e-07  Score=91.67  Aligned_cols=268  Identities=16%  Similarity=0.159  Sum_probs=158.3

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccc----------e-eEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYG----------V-DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      +..+..++.++.|..+|..+|+.+-.+......          + ..++.  .+..++.++.   |+.+..+|.++|+.+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~---dg~l~AlDa~TG~~~  144 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL---DGRLEAIDAKTGQRA  144 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT---TSEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc---CCEEEEEECCCCCEe
Confidence            567778888999999999999998776543210          0 01111  3446666643   789999999999988


Q ss_pred             EEeecc--cccEEEEEecC---CCCeEEEee-----CCCcEEEEeCCCceEEEEEEec-Cc-------------------
Q 020021          115 RYFKGH--HDRVVSLSLCS---SKDCFISGS-----LDRTVLLWDQRAEKCQGLLRVQ-GR-------------------  164 (332)
Q Consensus       115 ~~~~~h--~~~V~~v~~~~---~~~~l~s~s-----~Dg~i~iWd~~~~~~~~~~~~~-~~-------------------  164 (332)
                      ..+...  ......+..+|   ++..++..+     .|+.|..||.++++.+-.+... ..                   
T Consensus       145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  224 (689)
T 1yiq_A          145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG  224 (689)
T ss_dssp             EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred             eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence            776542  11111111122   444444332     3799999999999987665421 00                   


Q ss_pred             -------------eeEEEcCCC-eEEEEEeCC-------------------EEEEEECccCCCCCeeEEEecCCC-----
Q 020021          165 -------------PAAAYDDQG-LVFAVAFGG-------------------YIRMFDARKYEKGPFDIFSVGGDI-----  206 (332)
Q Consensus       165 -------------~~~~~~~~~-~~~~~~~~~-------------------~i~vwd~~~~~~~~~~~~~~~~~~-----  206 (332)
                                   ....+++.. .++....++                   .|..+|.++.+.  .-.+....+.     
T Consensus       225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~--~W~~~~~~~d~wd~~  302 (689)
T 1yiq_A          225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY--VWHYQTTPGDAWDYT  302 (689)
T ss_dssp             STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE--EEEEESSTTCCSCCC
T ss_pred             ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce--eEeeecCCccccccc
Confidence                         023455543 444433343                   388888875431  1122221111     


Q ss_pred             --CCceeEEEcCCCC---EEEEEcCCCeEEEEEccCCeEeEEeeecCCC-------------------------------
Q 020021          207 --SDANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS-------------------------------  250 (332)
Q Consensus       207 --~~v~~v~~s~dg~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------------------------  250 (332)
                        .......+..+|+   .++.++.+|.++++|..+|+++.........                               
T Consensus       303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~  382 (689)
T 1yiq_A          303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT  382 (689)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred             CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence              1111122233665   7888999999999999999987443321100                               


Q ss_pred             -----CCcceEEEECCCCCEEEEEcC---------------------------------------------CCcEEEEEC
Q 020021          251 -----RNSTLEASFSPEGMFVISGSG---------------------------------------------DGSVYAWSV  280 (332)
Q Consensus       251 -----~~~~~~v~~spdg~~l~sgs~---------------------------------------------Dg~i~vWd~  280 (332)
                           ...-..++|+|+...++..+.                                             +|.|+.||+
T Consensus       383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~  462 (689)
T 1yiq_A          383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP  462 (689)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred             CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence                 000112689999888887632                                             478999999


Q ss_pred             CCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccc
Q 020021          281 RSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       281 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~  321 (332)
                      .+++.+.....+. +...-.+...+.++..++.|  ++.|+..
T Consensus       463 ~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~  504 (689)
T 1yiq_A          463 VKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAAD  504 (689)
T ss_dssp             TTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECC
Confidence            9999887765443 23333445555555556655  6666654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.00  E-value=1.1e-07  Score=84.16  Aligned_cols=194  Identities=9%  Similarity=0.030  Sum_probs=120.1

Q ss_pred             cEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEEecC-ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEE
Q 020021          123 RVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF  200 (332)
Q Consensus       123 ~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~  200 (332)
                      ...+..|+|++ ..+++...++.|..||..+++.. .+..+. .....+++++.++.+. ...|.+||....   .+..+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g---~~~~~  124 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATG---VLTLH  124 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTC---CEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-CCCEEEEECCCC---cEEEE
Confidence            34567889974 46667777899999999877643 233332 2334556677666554 556999997543   22222


Q ss_pred             Eec-C--CCCCceeEEEcCCCCEEEEEcC------CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE-Ec
Q 020021          201 SVG-G--DISDANVVKFSNDGRLMLLTTM------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS-GS  270 (332)
Q Consensus       201 ~~~-~--~~~~v~~v~~s~dg~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s-gs  270 (332)
                      ... .  ....++.++++|+|+++++...      .+.|..+|  +++......    .......++|+|||+.|+. .+
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~----~~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA----DISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE----EESSEEEEEECTTSCEEEEEET
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC----CCcccCCeEEcCCCCEEEEEEC
Confidence            111 1  1124678999999998776542      25677776  455432211    1123457899999987654 45


Q ss_pred             CCCcEEEEECC--CC-ce-----EEEecCCCCCCceEEeCCCeeEEEec--cceEEEeccccccccc
Q 020021          271 GDGSVYAWSVR--SG-KE-----VASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDLSKLGA  327 (332)
Q Consensus       271 ~Dg~i~vWd~~--~~-~~-----~~~~~~~~~~v~~l~~sp~~~~l~t~--~~d~~~w~~~~~~~~~  327 (332)
                      .++.|.+||+.  ++ +.     ...+......+..+++.++|++.++.  ...+..|+++.+.+..
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~  265 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIAR  265 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEE
T ss_pred             CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEE
Confidence            67899999986  55 31     22222233445779999999877775  3458888886544443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.99  E-value=9.6e-08  Score=83.93  Aligned_cols=259  Identities=13%  Similarity=0.112  Sum_probs=154.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      ...+.++.+.++|.+.+ ++.+  |..+|. +++.+..+...........+.  ...++.++.   ++.+..+|.+ ++.
T Consensus        59 ~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~---~~~l~~~d~~-g~~  128 (330)
T 3hxj_A           59 EIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSM---DGHLYAINTD-GTE  128 (330)
T ss_dssp             GEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECT---TSEEEEECTT-SCE
T ss_pred             CCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEec---CCEEEEEcCC-CCE
Confidence            34467777777776554 4444  888886 565544433322222222232  445555543   5678899988 776


Q ss_pred             EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEEEEEeCCEEEEEECcc
Q 020021          114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAFGGYIRMFDARK  191 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~vwd~~~  191 (332)
                      +.....+...+.++...+++. +..++.++.+..+|.. ++....+....  ......+.++.++.++  +.+..+| ..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~  203 (330)
T 3hxj_A          129 KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PD  203 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TT
T ss_pred             EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CC
Confidence            666665555555666666665 5567788999999988 66554444332  2233444566665555  7788888 33


Q ss_pred             CCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC
Q 020021          192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  271 (332)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~  271 (332)
                      ..    ..+........+.++.+.++|.+.+ ++.++.+..+|. +++.+..+...   ......+.+.++++ |..++.
T Consensus       204 g~----~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g~-l~v~t~  273 (330)
T 3hxj_A          204 GT----EKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP-DGTEKWRFKTG---KRIESSPVIGNTDT-IYFGSY  273 (330)
T ss_dssp             SC----EEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT-TSCEEEEEECS---SCCCSCCEECTTSC-EEEECT
T ss_pred             Cc----EEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC-CCCEeEEeeCC---CCccccceEcCCCe-EEEecC
Confidence            21    1222222224567778888887655 556778888884 56655444422   12223345555665 555777


Q ss_pred             CCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceEEEe
Q 020021          272 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFW  318 (332)
Q Consensus       272 Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w  318 (332)
                      +|.+..+|. +++.+..+......+.++...+++++++.........
T Consensus       274 ~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~  319 (330)
T 3hxj_A          274 DGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYA  319 (330)
T ss_dssp             TCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEE
T ss_pred             CCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEE
Confidence            888999996 6777666554455677888888888777665543333

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.99  E-value=2.9e-07  Score=86.60  Aligned_cols=233  Identities=11%  Similarity=0.029  Sum_probs=147.3

Q ss_pred             CCCEEEEecCCCCCceeEEEEccCCceEEEeecc-cccEEEEEe-c-CCCCeEEEee------------------CCCcE
Q 020021           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH-HDRVVSLSL-C-SSKDCFISGS------------------LDRTV  145 (332)
Q Consensus        87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h-~~~V~~v~~-~-~~~~~l~s~s------------------~Dg~i  145 (332)
                      ++++++....  .+..|.+.|+.+.++.+.+.-- .....++++ + |++++++.++                  .++++
T Consensus       100 DG~~lfVnd~--~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A          100 DGRFLFMNDK--ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEET--TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CCCEEEEEcC--CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence            6666766543  3678999999999987755321 234678887 5 8888887774                  35689


Q ss_pred             EEEeCCCceEEEEEEecCce-eEEEcCCCeEEEEEe-C--------------------------------------CEEE
Q 020021          146 LLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVAF-G--------------------------------------GYIR  185 (332)
Q Consensus       146 ~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~--------------------------------------~~i~  185 (332)
                      .+.|..+.+....+...+.+ ....++++..+.++. +                                      +.|.
T Consensus       178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999998887777664433 344555554433332 2                                      1356


Q ss_pred             EEECccCCCCC-eeEEEecCCCCCceeEEEcCCCCEEEEEc-CCCeEEEEEccCCe------------EeEEeeecCCCC
Q 020021          186 MFDARKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGT------------LLSTYNVKPVSR  251 (332)
Q Consensus       186 vwd~~~~~~~~-~~~~~~~~~~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d~~~~~------------~~~~~~~~~~~~  251 (332)
                      +.|.+...... ......+   .....+.+||||+++++++ .+.+|.++|..+.+            ...+..    ..
T Consensus       258 VID~~~~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~----vG  330 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE----LG  330 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB----CC
T ss_pred             EEeCcccCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC----CC
Confidence            66665421112 2223332   1346789999999776664 67899999998642            222222    12


Q ss_pred             CcceEEEECCCCCEEEEEcCCCcEEEEECCC----------CceEEEecCCCCC-----CceEEeCCCeeEEEecc---c
Q 020021          252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRS----------GKEVASWMSFDTE-----PPVIKWTPGSLMFVTGS---S  313 (332)
Q Consensus       252 ~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~----------~~~~~~~~~~~~~-----v~~l~~sp~~~~l~t~~---~  313 (332)
                      ....-++|+|||+...+.-.|+.|.+||+.+          .+.+.++..|-.+     -..+.++|||++|.+..   .
T Consensus       331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk  410 (595)
T 1fwx_A          331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK  410 (595)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred             CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence            2345689999995555668899999999977          3445555544321     12345689999887753   3


Q ss_pred             e-E-----------EEecccccccccc
Q 020021          314 E-L-----------SFWIPDLSKLGAY  328 (332)
Q Consensus       314 d-~-----------~~w~~~~~~~~~~  328 (332)
                      | .           ++.+....++..+
T Consensus       411 dr~~~~gp~~~~~~ql~dis~~~m~lv  437 (595)
T 1fwx_A          411 DRFLNVGPLKPENDQLIDISGDKMVLV  437 (595)
T ss_dssp             TSSCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred             cccccCCCCCCCcceEEEcCCCcEEEE
Confidence            4 2           6777665555443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.97  E-value=7.1e-06  Score=70.01  Aligned_cols=247  Identities=12%  Similarity=0.045  Sum_probs=146.8

Q ss_pred             EEEEEeCCCcEEEEEcCCCeee-----EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccc
Q 020021           48 YLVTASDDESIRLYDVTAATCL-----KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD  122 (332)
Q Consensus        48 ~l~tgs~D~tv~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~  122 (332)
                      +|+.+.. +.|+.+|++.....     ..+.........+++.+.+..++++..  .++.|..+++..+.....+.....
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~~   79 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI--SEPSIGRASLHGGEPTTIIRQDLG   79 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET--TTTEEEEEESSSCCCEEEECTTCC
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEEC--CCCEEEEEecCCCCcEEEEECCCC
Confidence            4444443 36788887754321     112222234567889988888877753  257899999876554333333335


Q ss_pred             cEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcC-CCeEEEEEe---CCEEEEEECccCCCC
Q 020021          123 RVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDD-QGLVFAVAF---GGYIRMFDARKYEKG  195 (332)
Q Consensus       123 ~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~---~~~i~vwd~~~~~~~  195 (332)
                      ...++++.+++. ..++-...+.|.++++............  ......+++ .+.++.+..   .+.|..+++....  
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~--  157 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--  157 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--
Confidence            678999998654 5556566788999998654322222111  223456666 455554443   3578888764211  


Q ss_pred             CeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCc
Q 020021          196 PFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS  274 (332)
Q Consensus       196 ~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~  274 (332)
                       ...+. .......+.++++|++. ++++....+.|..+|...........   . ......++.. ++..+++....+.
T Consensus       158 -~~~~~-~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~-~~~P~gi~~d-~~~lyva~~~~~~  230 (267)
T 1npe_A          158 -RRILA-QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---G-LQYPFAVTSY-GKNLYYTDWKTNS  230 (267)
T ss_dssp             -CEEEE-CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---C-CCSEEEEEEE-TTEEEEEETTTTE
T ss_pred             -cEEEE-ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---C-CCCceEEEEe-CCEEEEEECCCCe
Confidence             11111 11223457899999765 55666777899999987543332222   1 1222355553 3444444455689


Q ss_pred             EEEEECCCCceEEEecCCC-CCCceEEeCCCee
Q 020021          275 VYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSL  306 (332)
Q Consensus       275 i~vWd~~~~~~~~~~~~~~-~~v~~l~~sp~~~  306 (332)
                      |.++|..+++.+..+.... ..+..+++.|++.
T Consensus       231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          231 VIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            9999999998888775433 2467888888864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.93  E-value=6.2e-07  Score=75.25  Aligned_cols=203  Identities=11%  Similarity=0.102  Sum_probs=132.1

Q ss_pred             hcccceeEeccCC--CcEEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC
Q 020021           22 QSMEVGMSFRDYN--GRISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN   97 (332)
Q Consensus        22 ~~~~~~~~l~~h~--~~I~~i~~s~dg~~l~tgs~D~--tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~   97 (332)
                      ...+.++.+ .|.  .-...+.|++ +.+..+.+.++  +|+.+|+.+++.++.+..... .....+...+..++...  
T Consensus         7 ~~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~lt--   81 (243)
T 3mbr_X            7 QGYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLT--   81 (243)
T ss_dssp             CCEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEE--
T ss_pred             cceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEE--
Confidence            345666777 455  3467999987 66778888764  999999999999988754332 11122223355555553  


Q ss_pred             CCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEE
Q 020021           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  177 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (332)
                      ..++.+.++|.++.+.+.++.--. .=.++  +++++.|+.+..++.|.++|.++.+....+.....             
T Consensus        82 w~~~~v~v~D~~tl~~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~-------------  145 (243)
T 3mbr_X           82 WRNHEGFVYDLATLTPRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG-------------  145 (243)
T ss_dssp             SSSSEEEEEETTTTEEEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEET-------------
T ss_pred             eeCCEEEEEECCcCcEEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC-------------
Confidence            347899999999999888876432 22344  45666666555688999999988776555432110             


Q ss_pred             EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC--------
Q 020021          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--------  249 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------  249 (332)
                          +              .       ....++.+.+. +|++++..-.+..|.+.|..+|+++..+.....        
T Consensus       146 ----g--------------~-------~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~  199 (243)
T 3mbr_X          146 ----G--------------R-------PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALT  199 (243)
T ss_dssp             ----T--------------E-------ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCC
T ss_pred             ----C--------------c-------ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccccc
Confidence                0              0       00112334443 778777777788999999999999988875421        


Q ss_pred             --CCCcceEEEECCCCCEEEEEcC
Q 020021          250 --SRNSTLEASFSPEGMFVISGSG  271 (332)
Q Consensus       250 --~~~~~~~v~~spdg~~l~sgs~  271 (332)
                        .....+.+|++|+++.|+..+.
T Consensus       200 ~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          200 DSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             CTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCcCCceEEEEEcCCCCEEEEECC
Confidence              1123467999998665555543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.91  E-value=2.6e-07  Score=86.91  Aligned_cols=245  Identities=8%  Similarity=0.059  Sum_probs=158.4

Q ss_pred             EEEEE---CCCCCEEEEEe-CCCcEEEEEcCCCeeeEEeeec-ccceeEEEE-c-cCCCEEEEecC--------------
Q 020021           38 SSMDF---HKSSSYLVTAS-DDESIRLYDVTAATCLKTINSK-KYGVDLVCF-T-SHPTTVIYSSK--------------   96 (332)
Q Consensus        38 ~~i~~---s~dg~~l~tgs-~D~tv~iwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~~~~~s~--------------   96 (332)
                      -.+++   .+||+++.... .+.+|-+-|+.+.++.+.+.-. ......+++ + |++.+++.++.              
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~  169 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  169 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence            34555   25888875555 4567999999999998855321 124667776 4 88888877631              


Q ss_pred             -CCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC--------------------------------
Q 020021           97 -NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR--------------------------------  143 (332)
Q Consensus        97 -~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg--------------------------------  143 (332)
                       +..++.+.+.|.++.+....+.--. .-..++++|+|+++++.+.+.                                
T Consensus       170 ~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G  248 (595)
T 1fwx_A          170 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  248 (595)
T ss_dssp             GGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             ccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence             1235689999999988776654211 235678899999888887553                                


Q ss_pred             ------cEEEEeCCC--ceE-EEEEEec-CceeEEEcCCCeEEEEEe--CCEEEEEECccCCC---CC----eeEE-Eec
Q 020021          144 ------TVLLWDQRA--EKC-QGLLRVQ-GRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEK---GP----FDIF-SVG  203 (332)
Q Consensus       144 ------~i~iWd~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~i~vwd~~~~~~---~~----~~~~-~~~  203 (332)
                            .|.+.|.++  ++. ...+... ....+.+++++.++.++.  +++|.++|+.+.+.   +.    .... ...
T Consensus       249 k~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          249 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             CSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             CeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence                  477777776  333 3344333 233567788888777664  58999999885310   00    0011 110


Q ss_pred             CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC----------CeEeEEeeecCC--CCCcceEEEECCCCCEEEEEc-
Q 020021          204 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----------GTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGS-  270 (332)
Q Consensus       204 ~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~--~~~~~~~v~~spdg~~l~sgs-  270 (332)
                       .-....-++|+|||..+++...++.|..||+.+          .+.+..+..+..  |......+.++|||++|++.. 
T Consensus       329 -vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          329 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             -CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             -CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence             012456789999997778889999999999876          456666554321  111122345789999999983 


Q ss_pred             --CCCc----------EEEEECCCCc
Q 020021          271 --GDGS----------VYAWSVRSGK  284 (332)
Q Consensus       271 --~Dg~----------i~vWd~~~~~  284 (332)
                        .|+-          -.++|++.++
T Consensus       408 ~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          408 FSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             CCccccccCCCCCCCcceEEEcCCCc
Confidence              3553          2889996655

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.90  E-value=1.1e-07  Score=83.55  Aligned_cols=258  Identities=13%  Similarity=0.130  Sum_probs=154.1

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEee
Q 020021           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK  118 (332)
Q Consensus        39 ~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~  118 (332)
                      ++.++.++. |..++.++.|..|| .+++.+..+......+..+...+++ .++.++    ++ +..+|. +++.+..+.
T Consensus        24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t----~~-l~~~d~-~g~~~~~~~   94 (330)
T 3hxj_A           24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG-TIYFGS----DK-VYAINP-DGTEKWRFD   94 (330)
T ss_dssp             CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT-EECCSS----CE-EEEECC-CGGGGGGSC
T ss_pred             CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC-cEEEec----Cc-EEEECC-CCcEEEEEE
Confidence            344556664 55577889999999 8888766554433333444444444 344333    33 777775 554433332


Q ss_pred             cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEcCCCeEEEEEeCCEEEEEECccCCCCC
Q 020021          119 GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGP  196 (332)
Q Consensus       119 ~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~  196 (332)
                      ..........+.  +..+..++.++.+..+|.. ++..........  ......+++.++.+..++.+..+|.. .+  .
T Consensus        95 ~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~--~  168 (330)
T 3hxj_A           95 TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GT--E  168 (330)
T ss_dssp             C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SC--E
T ss_pred             CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CC--E
Confidence            222222222333  4567778889999999987 655444433221  22344556777766667899999875 21  1


Q ss_pred             eeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEE
Q 020021          197 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY  276 (332)
Q Consensus       197 ~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~  276 (332)
                      ...+..  ....+..+.+.++|.+++..   +.+..+| .+++.+..+..   ....+..++..++|+.++ ++.++.+.
T Consensus       169 ~~~~~~--~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~---~~~~~~~~~~~~~g~l~v-~t~~~gl~  238 (330)
T 3hxj_A          169 KWRFKT--NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYA---GYWTVTRPAISEDGTIYV-TSLDGHLY  238 (330)
T ss_dssp             EEEEEC--SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECC---SSCCCSCCEECTTSCEEE-EETTTEEE
T ss_pred             eEEEec--CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEcc---CCcceeceEECCCCeEEE-EcCCCeEE
Confidence            112222  22345667777888866554   8899999 67776554432   224456677888886655 55678899


Q ss_pred             EEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc-eEEEecccc
Q 020021          277 AWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDL  322 (332)
Q Consensus       277 vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~-d~~~w~~~~  322 (332)
                      .+|. +++.+..+......+..+...+++++.+.... .+..++++.
T Consensus       239 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g  284 (330)
T 3hxj_A          239 AINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDG  284 (330)
T ss_dssp             EECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTS
T ss_pred             EECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCC
Confidence            9984 56666665544444566777777776665544 577777643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.84  E-value=4.3e-07  Score=77.56  Aligned_cols=191  Identities=14%  Similarity=0.110  Sum_probs=127.7

Q ss_pred             cEEEEEecCCCCeEEEeeC--CCcEEEEeCCCceEEEEEEecCce---eEEEcCCCeEEEEE-eCCEEEEEECccCCCCC
Q 020021          123 RVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVA-FGGYIRMFDARKYEKGP  196 (332)
Q Consensus       123 ~V~~v~~~~~~~~l~s~s~--Dg~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~  196 (332)
                      ...++.|++++...++.+.  ++.|++.|+.+++....+.+...+   ..... ++.++.+. .++.+.++|..+.+  .
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~--v   98 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLS--N   98 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTE--E
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCc--E
Confidence            4678999998766666654  679999999999988777654322   22333 33444444 36899999987543  2


Q ss_pred             eeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC--CCCcceEEEECCCCCEEEEEcCCCc
Q 020021          197 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDGS  274 (332)
Q Consensus       197 ~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~v~~spdg~~l~sgs~Dg~  274 (332)
                      ...+..+ ..   ....+++||+.+.++..+++|+++|..+.+.+..+.....  .......+.|. +|+.+++...++.
T Consensus        99 ~~~i~~g-~~---~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A           99 IKNFTHQ-MK---DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEEECC-SS---SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEEECC-CC---CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence            2233333 11   1245777887666666789999999999888877664311  11234567787 7877776667889


Q ss_pred             EEEEECCCCceEEEecCC-----------C--CCCceEEeCCCe-eEEEeccceEEEeccc
Q 020021          275 VYAWSVRSGKEVASWMSF-----------D--TEPPVIKWTPGS-LMFVTGSSELSFWIPD  321 (332)
Q Consensus       275 i~vWd~~~~~~~~~~~~~-----------~--~~v~~l~~sp~~-~~l~t~~~d~~~w~~~  321 (332)
                      |.+.|..+++.+..+...           .  ...+.|+|+|++ ++++|+...-+++..+
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence            999999999987776421           0  234789999986 5778876654444433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.84  E-value=1.5e-05  Score=70.07  Aligned_cols=237  Identities=11%  Similarity=0.099  Sum_probs=145.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee--------------------cccceeEEEEccCCCEEEEec
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS--------------------KKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      ...+++++++|+++.++..++.|..||..+++.. .+..                    ....+..+++.+....++.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            3457789999987888889999999998765432 2221                    012356678886334555553


Q ss_pred             CCCCCceeEEEEccCCceEEEeec-----ccccEEEEEecC-CCCeEEEeeC-----------------CCcEEEEeCCC
Q 020021           96 KNGWDESLRLLSLHDNKYLRYFKG-----HHDRVVSLSLCS-SKDCFISGSL-----------------DRTVLLWDQRA  152 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~~~-----h~~~V~~v~~~~-~~~~l~s~s~-----------------Dg~i~iWd~~~  152 (332)
                      .   .+.+..+|..++.. ..+..     .......+++.+ +|+..++-..                 ++.|..+|..+
T Consensus        99 ~---~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           99 C---YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             T---TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             C---CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            2   23477778765432 22221     123467899999 8987776432                 36788888876


Q ss_pred             ceEEEEEE-ecCceeEEEcCCCeEEEEE--eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC---
Q 020021          153 EKCQGLLR-VQGRPAAAYDDQGLVFAVA--FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---  226 (332)
Q Consensus       153 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~---  226 (332)
                      ++...... ........+++++..+.++  ..+.|..|++.....+....+..  ... ...+++.++|.++++...   
T Consensus       175 ~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~~~  251 (322)
T 2fp8_A          175 KETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSEELD  251 (322)
T ss_dssp             TEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEEETT
T ss_pred             CEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecCccc
Confidence            65433222 2233355677777544444  35799999986432223333221  112 567899999998887655   


Q ss_pred             -------CCeEEEEEccCCeEeEEeeecCCC-CCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          227 -------EGHIHVLDSFRGTLLSTYNVKPVS-RNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       227 -------dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                             .+.|..+|. .++.+..+...... ...+..+++ .+++.+++....+.|.++++..
T Consensus       252 ~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          252 GNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             SSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             ccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence                   567899987 47777666543211 233445566 4677777766788899998854

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.81  E-value=5.6e-07  Score=76.18  Aligned_cols=182  Identities=13%  Similarity=0.100  Sum_probs=123.4

Q ss_pred             ccEEEEEecCCCCeEEEeeCCC--cEEEEeCCCceEEEEEEecCce---eEEEcCCCeEEEEE-eCCEEEEEECccCCCC
Q 020021          122 DRVVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVA-FGGYIRMFDARKYEKG  195 (332)
Q Consensus       122 ~~V~~v~~~~~~~~l~s~s~Dg--~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~  195 (332)
                      ....++.|+ ++...+|.+.+|  .|+..|+++++....+.++...   ..... +..++.+. .++.+.++|..+.+  
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~--  118 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLR--  118 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTCC--
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCEEEEEECccCc--
Confidence            345788998 677778888876  9999999999988877765432   12333 34444444 37899999987653  


Q ss_pred             CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC--CCCcceEEEECCCCCEEEEEcCCC
Q 020021          196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDG  273 (332)
Q Consensus       196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~v~~spdg~~l~sgs~Dg  273 (332)
                      ....+...+     ....+++||+.+..+..+++|+++|..+.+.+.++.....  .......+.|. +|+.++..-.+.
T Consensus       119 ~~~ti~~~~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~  192 (262)
T 3nol_A          119 QVRSFNYDG-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTN  192 (262)
T ss_dssp             EEEEEECSS-----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             EEEEEECCC-----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCC
Confidence            223333322     2234556787776666688999999999988887764311  11223356675 787777776788


Q ss_pred             cEEEEECCCCceEEEecCC------------CCCCceEEeCCCe-eEEEeccc
Q 020021          274 SVYAWSVRSGKEVASWMSF------------DTEPPVIKWTPGS-LMFVTGSS  313 (332)
Q Consensus       274 ~i~vWd~~~~~~~~~~~~~------------~~~v~~l~~sp~~-~~l~t~~~  313 (332)
                      .|.+.|..+++.+..+...            ..-.+.|+|+|++ ++++||-.
T Consensus       193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            9999999999987765321            1234779999975 56677654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.80  E-value=3.2e-05  Score=76.69  Aligned_cols=277  Identities=13%  Similarity=0.176  Sum_probs=168.3

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEE
Q 020021           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR  115 (332)
Q Consensus        37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~  115 (332)
                      |.++..++++.+.+ +..++.+..||..+++...... .....|..+....++. +..+..   ++-+..+|..+++...
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~---~~Gl~~~~~~~~~~~~  249 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATE---GAGLFLINPKTKEIKN  249 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEB---SSCEEEEETTTTEEEE
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEEC---CCCeEEEeCCCCeEEE
Confidence            88888888887665 5655568999987766543211 1233466666655554 333332   2347888887765443


Q ss_pred             Eeec-------ccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec---------CceeEEEcCCCeEEEEE
Q 020021          116 YFKG-------HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---------GRPAAAYDDQGLVFAVA  179 (332)
Q Consensus       116 ~~~~-------h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  179 (332)
                      ....       ....|.++...++|...+ |..+ -+.+||..++.........         .......++++.+..+.
T Consensus       250 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt  327 (795)
T 4a2l_A          250 YLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGT  327 (795)
T ss_dssp             ECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEE
T ss_pred             eecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEE
Confidence            3222       135699998888776544 4444 5788998776644322111         11234455677777777


Q ss_pred             eCCEEEEEECccCCCCCeeEEEec-----CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec-----CC
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVG-----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-----PV  249 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~-----~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~  249 (332)
                      .++-|..|+....   .+..+...     .....|.++...++|.+.+ |+.++-+..||..+++...-....     ..
T Consensus       328 ~~~Gl~~~~~~~~---~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l  403 (795)
T 4a2l_A          328 YFGGLNYYHPIRN---RFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGI  403 (795)
T ss_dssp             SSSCEEEECGGGG---SSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CC
T ss_pred             CCCCeEEeCCCcc---cceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCC
Confidence            7778888875432   22222211     0123578888888888655 666667888998766543221110     12


Q ss_pred             CCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecC-----CCCCCceEEeCCCeeEEEeccceEEEecccccc
Q 020021          250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS-----FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK  324 (332)
Q Consensus       250 ~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~  324 (332)
                      ..+.+.+++..++|+.|..|+.++-+.++|..+++.. .+..     ....|.++...+++++.+.....+.+++++..+
T Consensus       404 ~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~  482 (795)
T 4a2l_A          404 GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRS  482 (795)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTE
T ss_pred             CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCe
Confidence            2356778888889984556777777999999876643 3321     234577888888888776655567778776544


Q ss_pred             c
Q 020021          325 L  325 (332)
Q Consensus       325 ~  325 (332)
                      .
T Consensus       483 ~  483 (795)
T 4a2l_A          483 F  483 (795)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.74  E-value=1.3e-06  Score=73.90  Aligned_cols=181  Identities=13%  Similarity=0.051  Sum_probs=123.0

Q ss_pred             ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce---eEEEcCCCeEEEEE-eCCEEEEEECccCCCCCe
Q 020021          122 DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPF  197 (332)
Q Consensus       122 ~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~  197 (332)
                      ....++.|+ ++...++.+.+|.|+..|+++++....+ ++...   ......+ .++.+. .++.+.+||..+.+  ..
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~--~~  129 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQ--RE  129 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTE--EE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCc--EE
Confidence            345788887 4667788899999999999999987777 65432   2334333 444444 47899999987653  22


Q ss_pred             eEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC--CCCcceEEEECCCCCEEEEEcCCCcE
Q 020021          198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDGSV  275 (332)
Q Consensus       198 ~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~v~~spdg~~l~sgs~Dg~i  275 (332)
                      ..+...+.     ...+++||+.+..+..+++|+++|..+.+.+.++.....  .......+.|. +|+.++....+..|
T Consensus       130 ~ti~~~~e-----GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I  203 (268)
T 3nok_A          130 RTTRYSGE-----GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV  203 (268)
T ss_dssp             EEEECSSC-----CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred             EEEeCCCc-----eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE
Confidence            23333221     234457788777777799999999999998887764321  11233456665 88777766678899


Q ss_pred             EEEECCCCceEEEecCC-------------CCCCceEEeCCCe-eEEEeccc
Q 020021          276 YAWSVRSGKEVASWMSF-------------DTEPPVIKWTPGS-LMFVTGSS  313 (332)
Q Consensus       276 ~vWd~~~~~~~~~~~~~-------------~~~v~~l~~sp~~-~~l~t~~~  313 (332)
                      .+.|.++++.+..+...             ..-.+.|+|+|++ ++++||-.
T Consensus       204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            99999999987765321             1234779999964 67787753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.73  E-value=6.3e-06  Score=80.14  Aligned_cols=259  Identities=12%  Similarity=0.110  Sum_probs=154.5

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecc----cceeEEEEccCCCEEEEecCC---CCCceeEEEEccCCceEEEee
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYFK  118 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~s~~---g~d~~v~v~d~~~~~~~~~~~  118 (332)
                      +..++.++.|+.|..+|..+|+.+-.+....    ..+...-.. .+..++.+..+   +.++.+..+|.++|+.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            4578888999999999999999987665421    111110000 13355555432   135789999999999887765


Q ss_pred             cc---cc----------------------------cEEEEEecCCCCeEEEeeCCC-------------------cEEEE
Q 020021          119 GH---HD----------------------------RVVSLSLCSSKDCFISGSLDR-------------------TVLLW  148 (332)
Q Consensus       119 ~h---~~----------------------------~V~~v~~~~~~~~l~s~s~Dg-------------------~i~iW  148 (332)
                      ..   ..                            ....+++.++.+.++.++.++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            21   00                            011356777777887777665                   39999


Q ss_pred             eCCCceEEEEEEecCc---------eeEEE--cCCCe----EEEEEeCCEEEEEECccCCCC------Ce-eEEEec---
Q 020021          149 DQRAEKCQGLLRVQGR---------PAAAY--DDQGL----VFAVAFGGYIRMFDARKYEKG------PF-DIFSVG---  203 (332)
Q Consensus       149 d~~~~~~~~~~~~~~~---------~~~~~--~~~~~----~~~~~~~~~i~vwd~~~~~~~------~~-~~~~~~---  203 (332)
                      |.++++..-.++....         +....  ..++.    ++.+..+|.+.++|.++.+.-      +. -...+.   
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            9999998777765311         11111  11232    444445788888887654310      00 000000   


Q ss_pred             --------------------CCC--CCceeEEEcCCCCEEEEE------------------------------------c
Q 020021          204 --------------------GDI--SDANVVKFSNDGRLMLLT------------------------------------T  225 (332)
Q Consensus       204 --------------------~~~--~~v~~v~~s~dg~~l~~~------------------------------------~  225 (332)
                                          +..  ..-..++++|+..++.+.                                    .
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence                                000  011236788876655432                                    1


Q ss_pred             CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCC-ceEEeCCC
Q 020021          226 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPG  304 (332)
Q Consensus       226 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v-~~l~~sp~  304 (332)
                      .+|.|+.||+.+|+.+=......    ......+...+.+++.++.||.+++||..+++.+..+....... .-+.+..+
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~  511 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA  511 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             ccceEEEEeCCCCcEEEEccCCC----CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEEC
Confidence            23789999999999875544321    12223444578889999999999999999999988775443211 23555566


Q ss_pred             eeEEE
Q 020021          305 SLMFV  309 (332)
Q Consensus       305 ~~~l~  309 (332)
                      |++.+
T Consensus       512 G~~yv  516 (668)
T 1kv9_A          512 GRQYV  516 (668)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            66443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.69  E-value=0.00014  Score=72.09  Aligned_cols=272  Identities=11%  Similarity=0.127  Sum_probs=167.6

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee--------cccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS--------KKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      ...|.++..+++|++.+ |..++-|..||..++...+-...        ....|..++..+++..+..+..   ++-+.+
T Consensus       356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~---~~Gl~~  431 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH---AGGLSI  431 (795)
T ss_dssp             CSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET---TTEEEE
T ss_pred             CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC---cCceeE
Confidence            45699999999887665 77777899999887654432211        1234666776666653444442   345888


Q ss_pred             EEccCCceEEEee----cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe--------cCceeEEEcCCC
Q 020021          106 LSLHDNKYLRYFK----GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--------QGRPAAAYDDQG  173 (332)
Q Consensus       106 ~d~~~~~~~~~~~----~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--------~~~~~~~~~~~~  173 (332)
                      +|.++++......    -+...|.++...++++..+.. .+ -+.+||..+++.......        ........++++
T Consensus       432 ~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g  509 (795)
T 4a2l_A          432 LHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK  509 (795)
T ss_dssp             EETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred             EeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC
Confidence            9988776433221    134578998888877755544 44 478889877655432211        011233445667


Q ss_pred             eEEEEEeCCEEEEEECccCCCCCeeEEEe-----cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee-c
Q 020021          174 LVFAVAFGGYIRMFDARKYEKGPFDIFSV-----GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-K  247 (332)
Q Consensus       174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~-----~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~  247 (332)
                      .+..+.. +.+..||.....   + .+..     ......+.++...++|.+.++.. . -+..||..+++.. .+.. .
T Consensus       510 ~lWigt~-~Gl~~~~~~~~~---~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~-~~~~~~  581 (795)
T 4a2l_A          510 RLWIGGE-EGLSVFKQEGLD---I-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK-RYNTTN  581 (795)
T ss_dssp             CEEEEES-SCEEEEEEETTE---E-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE-EECGGG
T ss_pred             CEEEEeC-CceEEEeCCCCe---E-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE-EeCCCC
Confidence            6666665 557778764321   1 1110     01123577888889999766554 3 5788898776543 2322 1


Q ss_pred             CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCC----C--ceEEeCCCeeEEEeccceEEEeccc
Q 020021          248 PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE----P--PVIKWTPGSLMFVTGSSELSFWIPD  321 (332)
Q Consensus       248 ~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~----v--~~l~~sp~~~~l~t~~~d~~~w~~~  321 (332)
                      ....+.+.++...++|+..+++ . +-|..||..+++ +..+....+.    +  .++...++|++++.+...+..++|+
T Consensus       582 gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~-~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~~~~p~  658 (795)
T 4a2l_A          582 GLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEK-FRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTFRPE  658 (795)
T ss_dssp             TCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTE-EEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTEEEEECGG
T ss_pred             CCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCc-EEEcCCcCCCccccCccCceeECCCCeEEEecCCceEEEcHH
Confidence            2234567778889999888776 3 458889987654 4444333221    1  3566788999888888778888775


Q ss_pred             c
Q 020021          322 L  322 (332)
Q Consensus       322 ~  322 (332)
                      .
T Consensus       659 ~  659 (795)
T 4a2l_A          659 L  659 (795)
T ss_dssp             G
T ss_pred             H
Confidence            3

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.68  E-value=0.00011  Score=64.02  Aligned_cols=239  Identities=11%  Similarity=0.033  Sum_probs=137.1

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCC-ce
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-ES  102 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d-~~  102 (332)
                      .++...|... .....++++++|+++++-..++.|..||.... ....+.. ......+++.+++..++ +.. +.+ ..
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~v-ad~-~~~~~~   96 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVA-TGW-NADSIP   96 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEE-EEE-CTTSCE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEE-Eec-cCCcce
Confidence            3444455433 45778999999998888778899999998753 3333322 23466788998887443 321 112 23


Q ss_pred             eEEEEccCCceEEEee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEE-EE------e--c--CceeEEEc
Q 020021          103 LRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-LR------V--Q--GRPAAAYD  170 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~-~~------~--~--~~~~~~~~  170 (332)
                      +..+|..+++...... .....-..++..+++..+++-..++.|.++|...+..... ..      .  .  ..+... +
T Consensus        97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-s  175 (306)
T 2p4o_A           97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-K  175 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-E
T ss_pred             EEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-C
Confidence            5556766766433222 1122234455455555566655688888888765422111 00      0  0  112222 4


Q ss_pred             CCCe-EEEEE-eCCEEEEEECcc-CCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec
Q 020021          171 DQGL-VFAVA-FGGYIRMFDARK-YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (332)
Q Consensus       171 ~~~~-~~~~~-~~~~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (332)
                      +++. ++.+. ..+.|..+|+.. ........+...   .....++++++|+++++....+.|.++|.. |+........
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~  251 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE  251 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence            4443 33333 357899999763 111112222211   234568999999998888888999999975 6553221111


Q ss_pred             CCCCCcceEEEEC---CCCCEEEEEcCCC
Q 020021          248 PVSRNSTLEASFS---PEGMFVISGSGDG  273 (332)
Q Consensus       248 ~~~~~~~~~v~~s---pdg~~l~sgs~Dg  273 (332)
                       .......+++|.   ||++.|+.++..+
T Consensus       252 -~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          252 -QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             -GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             -cccCCceEEEEecccCCCCEEEEECCCC
Confidence             122456789998   8987777665543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.66  E-value=6.1e-06  Score=80.10  Aligned_cols=270  Identities=10%  Similarity=0.036  Sum_probs=148.4

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------cEEEEEcCCCeeeE--Eeee-cccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           39 SMDFHK-SSSYLVTASDDE-----------SIRLYDVTAATCLK--TINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        39 ~i~~s~-dg~~l~tgs~D~-----------tv~iwd~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++++.+ ++.+++.|+.+.           .+.+||..+++-..  .+.. +......+++..++..++++...  +..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~--~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND--AKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS--TTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC--CCce
Confidence            455667 888888888654           58899998776432  2222 12223345667777777766432  3579


Q ss_pred             EEEEccCCceEEEeecccccE-EEEEecCCCCeEEEee-CC-----CcEEEEeCCCceEEEEEE-----ecC-ceeEEEc
Q 020021          104 RLLSLHDNKYLRYFKGHHDRV-VSLSLCSSKDCFISGS-LD-----RTVLLWDQRAEKCQGLLR-----VQG-RPAAAYD  170 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V-~~v~~~~~~~~l~s~s-~D-----g~i~iWd~~~~~~~~~~~-----~~~-~~~~~~~  170 (332)
                      .+||..+++-...-.-+..+- .++.+.++++.++.|+ .+     .++.+||..++.....-.     +.. .....+.
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~  347 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  347 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence            999998765433211111111 2345557899999998 45     579999998876543210     000 0000111


Q ss_pred             CCC-eEEEEEe---------CCEEEEEECccCCCCCeeEEEecC-------CCCCceeEEEc-CCCCEEEEEcCCC----
Q 020021          171 DQG-LVFAVAF---------GGYIRMFDARKYEKGPFDIFSVGG-------DISDANVVKFS-NDGRLMLLTTMEG----  228 (332)
Q Consensus       171 ~~~-~~~~~~~---------~~~i~vwd~~~~~~~~~~~~~~~~-------~~~~v~~v~~s-~dg~~l~~~~~dg----  228 (332)
                      .++ .++.++.         ...+..||.....-  ........       ....-.++.|. .++++++.|+.++    
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w--~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~  425 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD--VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS  425 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE--EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCcce--eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence            222 2233322         24567788754320  11111000       00112334443 4788888888543    


Q ss_pred             -------eEEEEEccCCeEeEEeeecCCCCCc-ceEEEECCCCCEEEEEcCC-----------CcEEEEECCCCceEEEe
Q 020021          229 -------HIHVLDSFRGTLLSTYNVKPVSRNS-TLEASFSPEGMFVISGSGD-----------GSVYAWSVRSGKEVASW  289 (332)
Q Consensus       229 -------~i~i~d~~~~~~~~~~~~~~~~~~~-~~~v~~spdg~~l~sgs~D-----------g~i~vWd~~~~~~~~~~  289 (332)
                             .|.+||..+.+-.... ....+... -...+..|+|+.++.|+.+           ..+.+||..+.+....-
T Consensus       426 ~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~  504 (656)
T 1k3i_A          426 DATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  504 (656)
T ss_dssp             BCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             CcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence                   6778887765543221 01112222 2244667899999999865           46899999776543211


Q ss_pred             -cCCCCC-CceEEeCCCeeEEEeccc
Q 020021          290 -MSFDTE-PPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       290 -~~~~~~-v~~l~~sp~~~~l~t~~~  313 (332)
                       +.+... ..+..+.||++.++.|+.
T Consensus       505 ~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          505 PNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCccccccHhhcCCCcEEEecCCC
Confidence             112211 223456799999999874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.65  E-value=6.8e-06  Score=68.90  Aligned_cols=182  Identities=14%  Similarity=0.038  Sum_probs=121.3

Q ss_pred             ccEEEEEecCCCCeEEEeeCCC--cEEEEeCCCceEEEEEEecCce---eEEEcCCCeEEEEE-eCCEEEEEECccCCCC
Q 020021          122 DRVVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVA-FGGYIRMFDARKYEKG  195 (332)
Q Consensus       122 ~~V~~v~~~~~~~~l~s~s~Dg--~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~  195 (332)
                      ....++.|++ +....|.+.+|  .|+..|+++++....+.++...   ..... ++.++.+. .++.+.++|..+.+  
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~--   96 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLT--   96 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTE--
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCc--
Confidence            4466888886 56677777764  8999999999988877765442   22333 34444444 47899999987653  


Q ss_pred             CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC--CCCcceEEEECCCCCEEEEEcCCC
Q 020021          196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDG  273 (332)
Q Consensus       196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~v~~spdg~~l~sgs~Dg  273 (332)
                      ....+...+     ....+.+|+..+.++..++.|+++|..+.+.+.++.....  .....+.+.+. +|+.++..-.+.
T Consensus        97 ~~~ti~~~~-----~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~  170 (243)
T 3mbr_X           97 PRARFRYPG-----EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTS  170 (243)
T ss_dssp             EEEEEECSS-----CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred             EEEEEeCCC-----CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCC
Confidence            222333322     1234556777666666789999999999988877764321  11233455553 777777666678


Q ss_pred             cEEEEECCCCceEEEecCC------------C-CCCceEEeCCCe-eEEEeccc
Q 020021          274 SVYAWSVRSGKEVASWMSF------------D-TEPPVIKWTPGS-LMFVTGSS  313 (332)
Q Consensus       274 ~i~vWd~~~~~~~~~~~~~------------~-~~v~~l~~sp~~-~~l~t~~~  313 (332)
                      .|.+.|..+++.+..+...            . .-.+.|+|+|++ ++++||-.
T Consensus       171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            9999999999987765311            1 133779999964 67777754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.65  E-value=5.4e-06  Score=80.60  Aligned_cols=191  Identities=17%  Similarity=0.141  Sum_probs=112.4

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccc----------e-eEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYG----------V-DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      +..+..++.++.|..+|..+|+.+-.+......          + ..+++  .+..++.++.   |+.+..+|.++|+.+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~---dg~l~alD~~tG~~~  140 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL---DGRLIALDAKTGKAI  140 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT---TSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC---CCEEEEEECCCCCEe
Confidence            567777888999999999999998776533210          0 01122  2345666543   788999999999988


Q ss_pred             EEeeccc----ccEEEEEecCCCCeEEEeeC------CCcEEEEeCCCceEEEEEEec-Cc-------------------
Q 020021          115 RYFKGHH----DRVVSLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQ-GR-------------------  164 (332)
Q Consensus       115 ~~~~~h~----~~V~~v~~~~~~~~l~s~s~------Dg~i~iWd~~~~~~~~~~~~~-~~-------------------  164 (332)
                      ..+....    ..+.+--.-.++ .++.++.      ++.|..+|.++++.+-.+... ..                   
T Consensus       141 W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  219 (668)
T 1kv9_A          141 WSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG  219 (668)
T ss_dssp             EEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred             eeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence            7765421    111110000133 4444432      689999999999987766531 10                   


Q ss_pred             -------------eeEEEcCC-CeEEEEEeCC-------------------EEEEEECccCCCCCeeEEEecCCC-----
Q 020021          165 -------------PAAAYDDQ-GLVFAVAFGG-------------------YIRMFDARKYEKGPFDIFSVGGDI-----  206 (332)
Q Consensus       165 -------------~~~~~~~~-~~~~~~~~~~-------------------~i~vwd~~~~~~~~~~~~~~~~~~-----  206 (332)
                                   ....+++. +.++....++                   .|..+|.++.+.  .-.+....+.     
T Consensus       220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~--~W~~~~~~~~~wd~~  297 (668)
T 1kv9_A          220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL--AWHYQVTPGDSWDFT  297 (668)
T ss_dssp             SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEESSTTCCSCCC
T ss_pred             cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce--eeEeecCCCcccccc
Confidence                         01345543 3444433333                   377888765431  1122222111     


Q ss_pred             --CCceeEEEcCCCC---EEEEEcCCCeEEEEEccCCeEeEEe
Q 020021          207 --SDANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGTLLSTY  244 (332)
Q Consensus       207 --~~v~~v~~s~dg~---~l~~~~~dg~i~i~d~~~~~~~~~~  244 (332)
                        .+.....+..+|+   .++.++.+|.++++|..+|+++...
T Consensus       298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence              1222223334775   6888999999999999999988443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.62  E-value=1.2e-08  Score=92.21  Aligned_cols=227  Identities=12%  Similarity=0.085  Sum_probs=109.6

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccc-eeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      ++.+..+.+++..+++++.|++|..||..+|+.+..+..+... +...-+...+..+++++   .|+.+..||.++|+.+
T Consensus        39 ~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~---~dg~v~a~D~~tG~~~  115 (369)
T 2hz6_A           39 PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGK---KQDIWYVIDLLTGEKQ  115 (369)
T ss_dssp             CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCE---EEEEEEEECCC-----
T ss_pred             CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEe---CCCEEEEEECCCCcEE
Confidence            4444445567778888899999999999999887666543211 11000011233344333   3788999999999988


Q ss_pred             EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcC----CCeEEEEEeCCEEEEEECc
Q 020021          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD----QGLVFAVAFGGYIRMFDAR  190 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~vwd~~  190 (332)
                      ..+..+.    ...++|++..+++++.|+.|..||.++++....+.........+..    ++.++.++.++.+..||.+
T Consensus       116 w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~  191 (369)
T 2hz6_A          116 QTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSE  191 (369)
T ss_dssp             ---------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTT
T ss_pred             EEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECC
Confidence            7776654    2345678889999999999999999988765444322211112222    2567777778999999987


Q ss_pred             cCCCCCeeEEEecCCCCCceeEEEcCCCCEEEE--EcCCCeEEEEEccCCe----EeEEeeecCCCCCcceEEEECC--C
Q 020021          191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL--TTMEGHIHVLDSFRGT----LLSTYNVKPVSRNSTLEASFSP--E  262 (332)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~--~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~v~~sp--d  262 (332)
                      +.+.    .+........+....++++|...+.  ...++.++.+|..+|+    .+-.+..    ...+   . +|  .
T Consensus       192 tG~~----~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~----~~~~---~-sp~~~  259 (369)
T 2hz6_A          192 SGDV----LWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPF----PKET---E-AKSKL  259 (369)
T ss_dssp             TCCE----EEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCC----CCHH---H-HHHHS
T ss_pred             CCcE----EEEecCCCceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeecc----Cccc---c-ccccc
Confidence            5431    2221111111233455667654211  0113456667765555    3221111    0111   0 11  3


Q ss_pred             CCEEEEEcCCCcEEEEECC
Q 020021          263 GMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~~  281 (332)
                      +..|+.++.||.++.++..
T Consensus       260 ~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          260 TPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             EEEECBEECSSCEECCEEE
T ss_pred             cceEEEecccCCEEecCcc
Confidence            4567778889999999875

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.62  E-value=0.00013  Score=62.07  Aligned_cols=220  Identities=7%  Similarity=-0.006  Sum_probs=131.1

Q ss_pred             CcEEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           35 GRISSMDFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        35 ~~I~~i~~s~dg~~-l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      ..+.+++++++++. +++-...+.|..+|.........+.........+++.+.+..++++..  ..+.|.++++.....
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS--QLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC--CCCEEEEEEcCCCCE
Confidence            45779999997654 556666789999999765543333222235677889888777777653  256888988865432


Q ss_pred             EEEeecccccEEEEEecCCCCeE-EEeeC--CCcEEEEeCCCceEEEEEEe--cCceeEEEcCCC-eEEEEE-eCCEEEE
Q 020021          114 LRYFKGHHDRVVSLSLCSSKDCF-ISGSL--DRTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQG-LVFAVA-FGGYIRM  186 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~~~~l-~s~s~--Dg~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~-~~~~i~v  186 (332)
                      .............+++.|++..| ++-..  .+.|..+++...........  .......+++++ .++.+. ..+.|.+
T Consensus       114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~  193 (267)
T 1npe_A          114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (267)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence            22222222456899999965544 44433  36788887754322111111  112345666644 444333 3578999


Q ss_pred             EECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC
Q 020021          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (332)
Q Consensus       187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~  264 (332)
                      +|......  ..... ..  .....+++. ++.++++....+.|..+|..+++.+.++...  .......+++.|++.
T Consensus       194 ~~~~g~~~--~~~~~-~~--~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g--~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          194 LNPAQPGR--RKVLE-GL--QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH--KQTRLYGITIALSQC  263 (267)
T ss_dssp             EETTEEEE--EEEEE-CC--CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCS--SCCCCCCEEEECSCC
T ss_pred             EecCCCce--EEEec-CC--CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccc--cccccceeeecCccC
Confidence            98753211  11111 11  123456654 5566666677899999999999988776532  112345678888875

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=0.0002  Score=70.70  Aligned_cols=278  Identities=11%  Similarity=0.042  Sum_probs=166.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee----------cccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS----------KKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ...|.+|..+++|.+-+ |..++-|..|+..++.... +..          ....|..++...++. +..+..   ++-+
T Consensus       312 ~~~v~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~---~~Gl  385 (781)
T 3v9f_A          312 NASARYIFQDSFNNIWI-GTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTD---GGGI  385 (781)
T ss_dssp             SSCEEEEEECSSCCEEE-EEBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSC-EEEEEB---SSCE
T ss_pred             CCeEEEEEEeCCCCEEE-EecCCeEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCC-EEEEeC---CCcE
Confidence            46799999999887664 6667788999887654322 211          123466666655554 444432   2347


Q ss_pred             EEEEccCCceEEEe---ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE--ec--CceeEEEcCCCeEE
Q 020021          104 RLLSLHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQ--GRPAAAYDDQGLVF  176 (332)
Q Consensus       104 ~v~d~~~~~~~~~~---~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~--~~~~~~~~~~~~~~  176 (332)
                      ..+|..++......   ......|.++...+++...+ |+.++-+..+|.++++......  ..  .......++++.+.
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw  464 (781)
T 3v9f_A          386 NVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW  464 (781)
T ss_dssp             EEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE
T ss_pred             EEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE
Confidence            77887654322111   12346788888777776444 6666678888887765432211  01  11223344566666


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecC----CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee-cCCCC
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGG----DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-KPVSR  251 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~----~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~  251 (332)
                      .+.. +.+..+|.....   +..+....    ....+.++...++|.+.+.....| +..+|..+++.. .+.. .....
T Consensus       465 igt~-~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~  538 (781)
T 3v9f_A          465 IGTH-AGVFVIDLASKK---VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCS  538 (781)
T ss_dssp             EEET-TEEEEEESSSSS---CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSC
T ss_pred             EEEC-CceEEEeCCCCe---EEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCC
Confidence            5555 678888865422   22222111    124577888899999766554445 677887766543 2321 12234


Q ss_pred             CcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC----CCCCceEEeCCCeeEEEeccceEEEecccccccc
Q 020021          252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF----DTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG  326 (332)
Q Consensus       252 ~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~~~  326 (332)
                      +.+.++...++|+..++.. +|-+..||..+++. ..+...    ...+.++...++|++.+++...+..++++..+..
T Consensus       539 ~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~~~~~~  615 (781)
T 3v9f_A          539 NTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITSKKCFY  615 (781)
T ss_dssp             SCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEETTTTEEE
T ss_pred             CeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEcCCceEEEECCCCceE
Confidence            5677888889998877654 67558999877653 333211    2357788889999888887777888887755443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.55  E-value=0.00027  Score=67.39  Aligned_cols=259  Identities=15%  Similarity=0.176  Sum_probs=148.3

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc----cee--EEEEcc--CCC-EEEEecCC---CCCceeEEEEccCCce
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKY----GVD--LVCFTS--HPT-TVIYSSKN---GWDESLRLLSLHDNKY  113 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~----~v~--~~~~~~--~~~-~~~~~s~~---g~d~~v~v~d~~~~~~  113 (332)
                      +..++.++.|+.|..+|..+|+.+-.......    .+.  -+....  +++ .++.++..   +.++.+..+|.++|+.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45777888999999999999998866543221    111  011111  122 44444321   2367899999999998


Q ss_pred             EEEeecccccE-----------------------------------------EEEEecCCCCeEEEeeC-----------
Q 020021          114 LRYFKGHHDRV-----------------------------------------VSLSLCSSKDCFISGSL-----------  141 (332)
Q Consensus       114 ~~~~~~h~~~V-----------------------------------------~~v~~~~~~~~l~s~s~-----------  141 (332)
                      +.........+                                         ...++.+...++..+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            76543211000                                         01344455555554432           


Q ss_pred             ---------C----CcEEEEeCCCceEEEEEEecCc---------eeEEEc---CCC----eEEEEEeCCEEEEEECccC
Q 020021          142 ---------D----RTVLLWDQRAEKCQGLLRVQGR---------PAAAYD---DQG----LVFAVAFGGYIRMFDARKY  192 (332)
Q Consensus       142 ---------D----g~i~iWd~~~~~~~~~~~~~~~---------~~~~~~---~~~----~~~~~~~~~~i~vwd~~~~  192 (332)
                               |    +.|..+|.++++.+-.++....         .-....   .++    .++....+|.+.++|.++.
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  356 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence                     3    6899999999998877765311         111222   233    2344446789999987643


Q ss_pred             CCCCeeEEEecC-----------------------------------------CC--CCceeEEEcCCCCEEEEEc----
Q 020021          193 EKGPFDIFSVGG-----------------------------------------DI--SDANVVKFSNDGRLMLLTT----  225 (332)
Q Consensus       193 ~~~~~~~~~~~~-----------------------------------------~~--~~v~~v~~s~dg~~l~~~~----  225 (332)
                      +.  +-.+....                                         ..  ..-..++++|+..++.+..    
T Consensus       357 ~~--lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~  434 (582)
T 1flg_A          357 KL--QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK  434 (582)
T ss_dssp             CE--EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred             CE--ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence            21  00000000                                         00  0012356777654444322    


Q ss_pred             -----------------------------CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEE
Q 020021          226 -----------------------------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY  276 (332)
Q Consensus       226 -----------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~  276 (332)
                                                   .+|.++.||+.+|+.+=+.....    ....-.....+..++.|+.||.++
T Consensus       435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~g~~dg~l~  510 (582)
T 1flg_A          435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFK  510 (582)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEE
T ss_pred             eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC----CCcccceEeCCCEEEEECCCCcEE
Confidence                                         35889999999998764443221    111111223567788899999999


Q ss_pred             EEECCCCceEEEecCCCCCC-ceEEeCCCeeEEEe
Q 020021          277 AWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVT  310 (332)
Q Consensus       277 vWd~~~~~~~~~~~~~~~~v-~~l~~sp~~~~l~t  310 (332)
                      .||.++++.+..+..-.... .-+.|..+|++.+.
T Consensus       511 A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          511 AFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence            99999999998875433222 23777778875544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.54  E-value=0.00016  Score=69.18  Aligned_cols=253  Identities=10%  Similarity=0.089  Sum_probs=146.7

Q ss_pred             EEEEeCCCcEEEEEcCCCeeeEEeeeccc----ceeE-EEEccCCCEEEEecCC---CCCceeEEEEccCCceEEEeecc
Q 020021           49 LVTASDDESIRLYDVTAATCLKTINSKKY----GVDL-VCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYFKGH  120 (332)
Q Consensus        49 l~tgs~D~tv~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~s~~---g~d~~v~v~d~~~~~~~~~~~~h  120 (332)
                      |+.++.|+.|..+|..+|+.+-.......    .+.. -.+  .+..++.++..   +.++.|+.+|.++|+.+..+...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            77888999999999999998866543221    1111 011  12345554421   13678999999999988766532


Q ss_pred             ccc-------------------------------------EE-EEEecCCCCeEEEeeCC----------------CcEE
Q 020021          121 HDR-------------------------------------VV-SLSLCSSKDCFISGSLD----------------RTVL  146 (332)
Q Consensus       121 ~~~-------------------------------------V~-~v~~~~~~~~l~s~s~D----------------g~i~  146 (332)
                      ...                                     ++ ...+.+...++..+..+                +.|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            111                                     00 23444555666655544                4799


Q ss_pred             EEeCCCceEEEEEEecCc---------eeEEEc---CCC---eEEE-EEeCCEEEEEECccCCCCCeeEEEecC------
Q 020021          147 LWDQRAEKCQGLLRVQGR---------PAAAYD---DQG---LVFA-VAFGGYIRMFDARKYEKGPFDIFSVGG------  204 (332)
Q Consensus       147 iWd~~~~~~~~~~~~~~~---------~~~~~~---~~~---~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~------  204 (332)
                      .+|.++++..-.++....         .-...+   .++   .++. ...+|.+.++|.++.+.  +-......      
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--lw~~~~~~~~~~~~  359 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL--VSANKLDDTVNVFK  359 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE--EEEEESSTTCCSEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCE--eecccccCCccccc
Confidence            999999988777765321         011222   234   3333 44578888888765321  00011000      


Q ss_pred             ----CC---------------------------CCceeEEEcCCCCEEEEEc----------------------------
Q 020021          205 ----DI---------------------------SDANVVKFSNDGRLMLLTT----------------------------  225 (332)
Q Consensus       205 ----~~---------------------------~~v~~v~~s~dg~~l~~~~----------------------------  225 (332)
                          ..                           ..-..++++|+..++.+..                            
T Consensus       360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  439 (599)
T 1w6s_A          360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY  439 (599)
T ss_dssp             EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceec
Confidence                00                           0112456777665554321                            


Q ss_pred             -----------CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCC
Q 020021          226 -----------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT  294 (332)
Q Consensus       226 -----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~  294 (332)
                                 ..|.+..||+.+|+.+=......    +...-.+...+..++.++.||.++.+|..+++.+..+.....
T Consensus       440 ~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g  515 (599)
T 1w6s_A          440 PGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG  515 (599)
T ss_dssp             ECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC----CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence                       34789999999998764443211    111111223667778899999999999999999887753322


Q ss_pred             C-CceEEeCCCeeEEE
Q 020021          295 E-PPVIKWTPGSLMFV  309 (332)
Q Consensus       295 ~-v~~l~~sp~~~~l~  309 (332)
                      . ..-+.|..+|++.+
T Consensus       516 ~~~~P~~y~~~G~qyv  531 (599)
T 1w6s_A          516 AIGYPMTYTHKGTQYV  531 (599)
T ss_dssp             CCSCCEEEEETTEEEE
T ss_pred             cEeccEEEEeCCEEEE
Confidence            2 23366767776543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.53  E-value=7.3e-05  Score=71.22  Aligned_cols=258  Identities=12%  Similarity=0.076  Sum_probs=150.0

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc----ceeE-EEEccCCCEEEEecCC---CCCceeEEEEccCCceEEEe
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKY----GVDL-VCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYF  117 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~s~~---g~d~~v~v~d~~~~~~~~~~  117 (332)
                      +..++.++.|+.|..+|..+|+.+-.......    .+.. -..  .+..++.++..   +.++.+..+|.++|+.+..+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            45777888999999999999998866543221    1111 011  13355555432   12678999999999988766


Q ss_pred             eccccc-------------------------------------E-EEEEecCCCCeEEEeeC------------C----C
Q 020021          118 KGHHDR-------------------------------------V-VSLSLCSSKDCFISGSL------------D----R  143 (332)
Q Consensus       118 ~~h~~~-------------------------------------V-~~v~~~~~~~~l~s~s~------------D----g  143 (332)
                      ......                                     + ..+++.+....+..+..            |    +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            532110                                     0 12344554455544432            2    3


Q ss_pred             cEEEEeCCCceEEEEEEecCc---------eeEEEc--CCC---eEE-EEEeCCEEEEEECccCCCCCeeEEEecCC---
Q 020021          144 TVLLWDQRAEKCQGLLRVQGR---------PAAAYD--DQG---LVF-AVAFGGYIRMFDARKYEKGPFDIFSVGGD---  205 (332)
Q Consensus       144 ~i~iWd~~~~~~~~~~~~~~~---------~~~~~~--~~~---~~~-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~---  205 (332)
                      .|..+|.++++.+-.++....         .-....  .++   .++ ....+|.+.++|..+.+.  +-.......   
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--~w~~~~~~~~~w  350 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL--IVAEKVDPAVNV  350 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE--EEEEESSTTCCS
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE--EeeecccCCccc
Confidence            599999999988777664311         111121  234   233 334468888888764321  111111100   


Q ss_pred             -------C---------------------------CCceeEEEcCCCCEEEEEc--------------------------
Q 020021          206 -------I---------------------------SDANVVKFSNDGRLMLLTT--------------------------  225 (332)
Q Consensus       206 -------~---------------------------~~v~~v~~s~dg~~l~~~~--------------------------  225 (332)
                             .                           ..-..++++|+..++.+..                          
T Consensus       351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence                   0                           0013467888876665543                          


Q ss_pred             -----------CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCC
Q 020021          226 -----------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT  294 (332)
Q Consensus       226 -----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~  294 (332)
                                 .+|.++.||+.+|+.+-++....    ......+...+..++.++.||.++.||..+++.+..+.....
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  506 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eccCccccCCCCCCeEEEEECCCCCEEEEecCCC----CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence                       35789999999998875554321    111122233566777799999999999999999887754322


Q ss_pred             C-CceEEeCCCeeEEEec
Q 020021          295 E-PPVIKWTPGSLMFVTG  311 (332)
Q Consensus       295 ~-v~~l~~sp~~~~l~t~  311 (332)
                      . -.-+.+.+++++++..
T Consensus       507 ~~~~p~~~~~~G~~yv~~  524 (571)
T 2ad6_A          507 GIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             CCSCCEEEEETTEEEEEE
T ss_pred             cEeeeEEEEECCEEEEEE
Confidence            1 2335566777766554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.49  E-value=0.00016  Score=68.83  Aligned_cols=193  Identities=11%  Similarity=0.060  Sum_probs=109.9

Q ss_pred             CCEEEEEeC-CCcEEEEEc-CCCeeeEEeeeccc-ce----------eEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021           46 SSYLVTASD-DESIRLYDV-TAATCLKTINSKKY-GV----------DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (332)
Q Consensus        46 g~~l~tgs~-D~tv~iwd~-~~~~~~~~~~~~~~-~v----------~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~  112 (332)
                      +..+..++. ++.|.-+|. .+|+.+-.+..... .+          ...+.  .+..++.++.   |+.+..+|.++|+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~---dg~l~alD~~tG~  136 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA---NGHLLALDAKTGK  136 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT---TSEEEEEETTTCC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC---CCEEEEEECCCCC
Confidence            456666666 899999999 89998866543221 00          01122  2445666543   7789999999999


Q ss_pred             eEEEeec--ccc--cEEEEEecCCCCeEEEeeC------CCcEEEEeCCCceEEEEEEecCce-----------------
Q 020021          113 YLRYFKG--HHD--RVVSLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQGRP-----------------  165 (332)
Q Consensus       113 ~~~~~~~--h~~--~V~~v~~~~~~~~l~s~s~------Dg~i~iWd~~~~~~~~~~~~~~~~-----------------  165 (332)
                      .+.....  +..  .+.+--.-.++ .++.++.      |+.|..+|.++++.+-.+......                 
T Consensus       137 ~~W~~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G  215 (571)
T 2ad6_A          137 INWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG  215 (571)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EEEEecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence            8776542  211  12110000134 4554443      799999999999887665432110                 


Q ss_pred             -----------------------eEEEcCC-CeEEEEEeC----------------CEEEEEECccCCCCCeeEEEecCC
Q 020021          166 -----------------------AAAYDDQ-GLVFAVAFG----------------GYIRMFDARKYEKGPFDIFSVGGD  205 (332)
Q Consensus       166 -----------------------~~~~~~~-~~~~~~~~~----------------~~i~vwd~~~~~~~~~~~~~~~~~  205 (332)
                                             ...+++. +.++....+                +.|..+|.++.+.  .-.+....+
T Consensus       216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~--~W~~~~~~~  293 (571)
T 2ad6_A          216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA--KWGYQKTPH  293 (571)
T ss_dssp             CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE--EEEEESSTT
T ss_pred             ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE--EEEecCCCC
Confidence                                   1233332 344333321                2577788765321  112222211


Q ss_pred             C-------CCceeEEEcCCCC---EEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021          206 I-------SDANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       206 ~-------~~v~~v~~s~dg~---~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                      .       .....+....+|+   .++.++.+|.++++|..+|+++-.+..
T Consensus       294 d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          294 DEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             CSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             cccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence            1       1112223335784   677888999999999999998766543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=0.00054  Score=67.70  Aligned_cols=279  Identities=10%  Similarity=0.054  Sum_probs=160.5

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee-------cccceeEEEEccCCCEEEEecCCCCCceeEEEE
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-------KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d  107 (332)
                      ..|.+|..+++|.+.+.. .+ .+.+||..+++...-...       ....|..+....++. +..+..   .+-+.++|
T Consensus       211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~---~~Gl~~~~  284 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATE---LNGIMILD  284 (781)
T ss_dssp             SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEES---SSCEEEEE
T ss_pred             CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeC---CCCeEEEC
Confidence            568999999988877644 34 699999877654322111       123466665555553 444432   13477788


Q ss_pred             ccCCceEEEee--------------cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe---------c--
Q 020021          108 LHDNKYLRYFK--------------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---------Q--  162 (332)
Q Consensus       108 ~~~~~~~~~~~--------------~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~---------~--  162 (332)
                      ..++.......              -....|.++...++|. |..|+.++-|..++...+........         .  
T Consensus       285 ~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  363 (781)
T 3v9f_A          285 LQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK  363 (781)
T ss_dssp             TTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred             CCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence            77654322111              1245688888877775 56677777788888765543222110         1  


Q ss_pred             CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeE
Q 020021          163 GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS  242 (332)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~  242 (332)
                      .......+.++.+..+..++-|..||........+. .........|.++...++|.+.+ ++.++-+..+|..+++.. 
T Consensus       364 ~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-  440 (781)
T 3v9f_A          364 VVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNK-ENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-  440 (781)
T ss_dssp             CEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-
T ss_pred             ceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEcc-CCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-
Confidence            112334455677776666677888886532111110 00011224577788888888666 555567888998776543 


Q ss_pred             EeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC-----CCCCceEEeCCCeeEEEecc-ceEE
Q 020021          243 TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-----DTEPPVIKWTPGSLMFVTGS-SELS  316 (332)
Q Consensus       243 ~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~-----~~~v~~l~~sp~~~~l~t~~-~d~~  316 (332)
                      .+.........+.++...++|+..+.. . +-+.++|..+++........     ...|.++...+++++.+... ..+.
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~  518 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVG  518 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEE
T ss_pred             EeccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEE
Confidence            222111234567788888888876654 4 45999998876543322211     34577888888888766654 4577


Q ss_pred             Eeccccccc
Q 020021          317 FWIPDLSKL  325 (332)
Q Consensus       317 ~w~~~~~~~  325 (332)
                      .++++..++
T Consensus       519 ~~~~~~~~~  527 (781)
T 3v9f_A          519 IYTPDMQLV  527 (781)
T ss_dssp             EECTTCCEE
T ss_pred             EEeCCCCeE
Confidence            777665443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.42  E-value=0.00058  Score=59.35  Aligned_cols=219  Identities=11%  Similarity=0.033  Sum_probs=124.8

Q ss_pred             ceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCC-C-cEEEEeCCCceE
Q 020021           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-R-TVLLWDQRAEKC  155 (332)
Q Consensus        78 ~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~D-g-~i~iWd~~~~~~  155 (332)
                      ....+++.+++. ++++..  .++.|..+|.... ....+. -.....++++.++++.+++.... + .|..+|..+++.
T Consensus        33 ~pegia~~~~g~-lyv~d~--~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           33 FLENLASAPDGT-IFVTNH--EVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CEEEEEECTTSC-EEEEET--TTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcceEEECCCCC-EEEEeC--CCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            355678888776 444432  2567888887653 332222 23468899999999876665432 2 466667677665


Q ss_pred             EEEEEecC---ceeEEEcCCCeEEEEE-eCCEEEEEECccCCCCCeeEEEe---------cCCCCCceeEEEcCCCC-EE
Q 020021          156 QGLLRVQG---RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSV---------GGDISDANVVKFSNDGR-LM  221 (332)
Q Consensus       156 ~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~---------~~~~~~v~~v~~s~dg~-~l  221 (332)
                      ........   .......+++.++... ..+.|..+|.....   ......         .......+.+  +||++ ++
T Consensus       108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~---~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS---GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE---EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCc---EeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            43332221   1122223444444444 36788888864210   011100         0111223444  88885 55


Q ss_pred             EEEcCCCeEEEEEccC-CeE--eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE--EecCCCCCC
Q 020021          222 LLTTMEGHIHVLDSFR-GTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA--SWMSFDTEP  296 (332)
Q Consensus       222 ~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~--~~~~~~~~v  296 (332)
                      ++-...++|+.+|... ++.  ...+..    ......++++++|+++++....+.|.++|.. ++...  .+...-..+
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p  257 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGS  257 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTE
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCc
Confidence            6667788999999864 332  111111    1223468999999988887778899999974 65432  232222457


Q ss_pred             ceEEeC---CCe-eEEEec
Q 020021          297 PVIKWT---PGS-LMFVTG  311 (332)
Q Consensus       297 ~~l~~s---p~~-~~l~t~  311 (332)
                      ++++|.   |++ .++++.
T Consensus       258 ~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          258 TAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             EEEEECCSTTTTTEEEEEE
T ss_pred             eEEEEecccCCCCEEEEEC
Confidence            899998   885 455554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.42  E-value=0.00077  Score=64.39  Aligned_cols=194  Identities=14%  Similarity=0.075  Sum_probs=111.5

Q ss_pred             CCEEEEEeC-CCcEEEEEc-CCCeeeEEeeecccc-----------eeEEEEccCCCE----EEEecCCCCCceeEEEEc
Q 020021           46 SSYLVTASD-DESIRLYDV-TAATCLKTINSKKYG-----------VDLVCFTSHPTT----VIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        46 g~~l~tgs~-D~tv~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----~~~~s~~g~d~~v~v~d~  108 (332)
                      +..+..++. ++.|.-+|. .+|+.+-.+......           ...+++.+.+..    ++.++.   |+.+..+|.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~---dg~l~AlDa  138 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL---DGNVAALNA  138 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---TSEEEEEET
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---CCEEEEEEC
Confidence            456666776 899999999 899988666433210           112344333333    666543   778999999


Q ss_pred             cCCceEEEeeccc--c--cEEEEEecCCCCeEEEee------CCCcEEEEeCCCceEEEEEEecCce-------------
Q 020021          109 HDNKYLRYFKGHH--D--RVVSLSLCSSKDCFISGS------LDRTVLLWDQRAEKCQGLLRVQGRP-------------  165 (332)
Q Consensus       109 ~~~~~~~~~~~h~--~--~V~~v~~~~~~~~l~s~s------~Dg~i~iWd~~~~~~~~~~~~~~~~-------------  165 (332)
                      ++|+.+.......  .  .+.+--.-.++ .++.++      .++.|+.+|.++++.+-.+......             
T Consensus       139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~  217 (599)
T 1w6s_A          139 ETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN  217 (599)
T ss_dssp             TTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             CCCCEEEeecCCCCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence            9999876654221  0  12211001134 444444      4899999999999887655432110             


Q ss_pred             ---------------------------eEEEcC-CCeEEEEEeC----------------CEEEEEECccCCCCCeeEEE
Q 020021          166 ---------------------------AAAYDD-QGLVFAVAFG----------------GYIRMFDARKYEKGPFDIFS  201 (332)
Q Consensus       166 ---------------------------~~~~~~-~~~~~~~~~~----------------~~i~vwd~~~~~~~~~~~~~  201 (332)
                                                 ...+++ .+.++....+                +.|..+|.++.+.  .-.+.
T Consensus       218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~--~W~~q  295 (599)
T 1w6s_A          218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA--KFGYQ  295 (599)
T ss_dssp             GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE--EEEEE
T ss_pred             ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce--eeEee
Confidence                                       113333 3344443333                3677777765321  11222


Q ss_pred             ecCCC-------CCceeEEEc-CCC---CEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021          202 VGGDI-------SDANVVKFS-NDG---RLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       202 ~~~~~-------~~v~~v~~s-~dg---~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (332)
                      ...+.       .....+... .+|   ..++.++.+|.++++|..+|+++-...
T Consensus       296 ~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          296 KTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             SSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            22221       011112222 577   567778999999999999999886554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.42  E-value=4.5e-05  Score=66.94  Aligned_cols=195  Identities=12%  Similarity=0.076  Sum_probs=118.3

Q ss_pred             cEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec----------------------CceeEEEcC-CCeEEEEE
Q 020021          123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----------------------GRPAAAYDD-QGLVFAVA  179 (332)
Q Consensus       123 ~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~----------------------~~~~~~~~~-~~~~~~~~  179 (332)
                      ...++++.++++.++++..++.|..||..++... .+...                      ......+++ ++.++.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            3456788888887888888899999998765433 22110                      112345564 66666665


Q ss_pred             eCCEEEEEECccCCCCCeeEEE--ecC-CCCCceeEEEcC-CCCEEEEEcC-----------------CCeEEEEEccCC
Q 020021          180 FGGYIRMFDARKYEKGPFDIFS--VGG-DISDANVVKFSN-DGRLMLLTTM-----------------EGHIHVLDSFRG  238 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~--~~~-~~~~v~~v~~s~-dg~~l~~~~~-----------------dg~i~i~d~~~~  238 (332)
                      ..+.|..+|.....   ...+.  ..+ .....+.+++.+ +|+++++...                 ++.|..+|..++
T Consensus        99 ~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           99 CYYHLSVVGSEGGH---ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             TTTEEEEECTTCEE---CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             CCCCEEEEeCCCCE---EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            55667778754211   11111  111 112357799999 9998887543                 367999998777


Q ss_pred             eEeEEeeecCCCCCcceEEEECCCCCEEEEE-cCCCcEEEEECCCCc--eEEEecCCCCCCceEEeCCCeeEEEeccc--
Q 020021          239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPGSLMFVTGSS--  313 (332)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg-s~Dg~i~vWd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~l~t~~~--  313 (332)
                      +.......    ......++++|||++|+.+ +..+.|+++++....  ....+....+ +..+++.++|++.++...  
T Consensus       176 ~~~~~~~~----~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~  250 (322)
T 2fp8_A          176 ETTLLLKE----LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEEL  250 (322)
T ss_dssp             EEEEEEEE----ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEET
T ss_pred             EEEEeccC----CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcc
Confidence            64322211    1223468999999866555 667899999987421  1222222223 677999999987777543  


Q ss_pred             ----------eEEEecccccccc
Q 020021          314 ----------ELSFWIPDLSKLG  326 (332)
Q Consensus       314 ----------d~~~w~~~~~~~~  326 (332)
                                .+..++++.+.+.
T Consensus       251 ~~~~~~~~~~~v~~~d~~G~~~~  273 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDEFGNILE  273 (322)
T ss_dssp             TSSTTSCEEEEEEEECTTSCEEE
T ss_pred             cccccCCCccEEEEECCCCCEEE
Confidence                      2566666654443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.25  E-value=0.0015  Score=55.17  Aligned_cols=214  Identities=13%  Similarity=0.170  Sum_probs=127.9

Q ss_pred             eEeccCCCcEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeEEeeecc-cceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~-tgs~D~tv~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      +.+.+-.+.++.|+++|+++.|. ....++.|...|+. ++.++.+.... .....+++.+++...++ .. + ++.+.+
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs-~E-~-~~~l~~   95 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVIS-DE-R-DYAIYV   95 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEE-ET-T-TTEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEE-EC-C-CCcEEE
Confidence            56778888999999999876554 46677888888987 88887775321 23556777766654343 32 2 567888


Q ss_pred             EEccCCceE---EEee------cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEE
Q 020021          106 LSLHDNKYL---RYFK------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF  176 (332)
Q Consensus       106 ~d~~~~~~~---~~~~------~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (332)
                      +++.....+   ....      .+....-++++.|.+++|..+.......+|.+. +..                .+.  
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~-g~~----------------~~~--  156 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN-GLL----------------SSN--  156 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE-STT----------------CSS--
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc-ccc----------------cCC--
Confidence            877654322   1111      123345789999988777776655554555442 100                000  


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC-----
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS-----  250 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----  250 (332)
                            .+++.+.....        ......+..++++.|. |++++.+...+.+.++|.. |+.+..+.+....     
T Consensus       157 ------~l~i~~~~~~~--------~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~  221 (255)
T 3qqz_A          157 ------ELHISKDKALQ--------RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSH  221 (255)
T ss_dssp             ------CCEEEECHHHH--------HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSS
T ss_pred             ------ceeeecchhhc--------cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCccc
Confidence                  01111100000        0001134577888874 5677778888899999965 6677666554221     


Q ss_pred             -CCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021          251 -RNSTLEASFSPEGMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       251 -~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~  280 (332)
                       ..-.-.++|.|+|+.+++ |+-.-++++.-
T Consensus       222 ~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          222 NIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             CCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             ccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence             112246999999986655 66667777654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.22  E-value=0.0029  Score=57.00  Aligned_cols=250  Identities=11%  Similarity=0.006  Sum_probs=141.8

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEe
Q 020021           38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (332)
Q Consensus        38 ~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~  117 (332)
                      .|.+..+++ +|+- +....|+..++...+....+. .......++|.+....++++..  ..+.|..+++..+.....+
T Consensus        80 ~C~~~~~~~-~l~~-~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           80 SCKALGPEP-VLLF-ANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             CEEECSSCC-EEEE-ECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCEEEEE
T ss_pred             eECCccccc-eeEe-ecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeC--CCCcEEEEecCCCCcEEEE
Confidence            355555533 3332 234678888887655433333 2334667889888788887753  2567888888776544444


Q ss_pred             ecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEe--cCceeEEEcC-CCeEEEEEe-C-CEEEEEECcc
Q 020021          118 KGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYDD-QGLVFAVAF-G-GYIRMFDARK  191 (332)
Q Consensus       118 ~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~-~-~~i~vwd~~~  191 (332)
                      ........++++.+. ++..++-...+.|.+.++........+..  ......++++ .+.++.+.. . +.|..+++.-
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            333344567888864 44556666677888888765432222221  1122445665 344443333 3 5777777643


Q ss_pred             CCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021          192 YEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs  270 (332)
                      ..   ...+ ........+.++++|++ +++++-...+.|..+|+..... ..+..  ........+++ ..+..+.+-.
T Consensus       235 ~~---~~~~-~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~--~~~~~P~giav-~~~~ly~td~  306 (386)
T 3v65_B          235 SG---RRII-ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVIS--QGLPHPFAITV-FEDSLYWTDW  306 (386)
T ss_dssp             CS---CEEE-ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEEC--SSCSSEEEEEE-ETTEEEEEET
T ss_pred             CC---cEEE-EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEE--CCCCCceEEEE-ECCEEEEeeC
Confidence            21   1111 11122345789999755 5556666778999999764322 22221  11233456777 4556666667


Q ss_pred             CCCcEEEEECCCCceEEEecCCCCCCceEE
Q 020021          271 GDGSVYAWSVRSGKEVASWMSFDTEPPVIK  300 (332)
Q Consensus       271 ~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~  300 (332)
                      ..+.|..++..+++.+..+......+..|+
T Consensus       307 ~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~  336 (386)
T 3v65_B          307 HTKSINSANKFTGKNQEIIRNKLHFPMDIH  336 (386)
T ss_dssp             TTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred             CCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence            788899999767776665543323344444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.19  E-value=0.0044  Score=59.02  Aligned_cols=110  Identities=13%  Similarity=0.092  Sum_probs=65.0

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccc-e--------eEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYG-V--------DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY  116 (332)
Q Consensus        46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~-v--------~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~  116 (332)
                      +..+..++.++.|.-+|..+|+.+-.+...... .        ..+++  .+..++.++.   |+.+..+|.++|+.+..
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~---dg~l~AlD~~TG~~~W~  142 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTL---DASVVALNKNTGKVVWK  142 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEET---TTEEEEEESSSCCEEEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeC---CCEEEEEECCCCCEEee
Confidence            345555555444999999999998766543211 0        11111  2345665543   67899999999998876


Q ss_pred             eecccc----cEEE-EEecC---CCC-eEEEee------CCCcEEEEeCCCceEEEEEE
Q 020021          117 FKGHHD----RVVS-LSLCS---SKD-CFISGS------LDRTVLLWDQRAEKCQGLLR  160 (332)
Q Consensus       117 ~~~h~~----~V~~-v~~~~---~~~-~l~s~s------~Dg~i~iWd~~~~~~~~~~~  160 (332)
                      .+....    .+.+ -.+..   +++ .++.++      .++.|..+|.++++.+-...
T Consensus       143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence            653221    1111 01111   233 555554      38999999999988765443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.18  E-value=0.0031  Score=57.76  Aligned_cols=239  Identities=10%  Similarity=0.069  Sum_probs=134.8

Q ss_pred             EEEEEECCC---CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC-Cce-eEEEEccCC
Q 020021           37 ISSMDFHKS---SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-DES-LRLLSLHDN  111 (332)
Q Consensus        37 I~~i~~s~d---g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~-d~~-v~v~d~~~~  111 (332)
                      ...|+++|+   +.++++ ...+.|+.+|..++....... .......+++.+++. ++++...+. +.. +...+...+
T Consensus       141 P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            558999985   554444 333899999998777654333 333467889999998 555432211 111 222232221


Q ss_pred             ce-EEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEE-EEEecC---ceeEEEcCCCeEEEEE--eCCE
Q 020021          112 KY-LRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQG---RPAAAYDDQGLVFAVA--FGGY  183 (332)
Q Consensus       112 ~~-~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~--~~~~  183 (332)
                      .. ...+. .......+++.| ++...++-..++.|+.+|..++.... .+....   ....++++++..+.++  ..+.
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            11 01111 223345678888 67777777778889999987665422 222111   1236777777533333  3578


Q ss_pred             EEEEECccCCC--C-CeeEEEecC------------CCCCceeEEE---------cCCCCEEEEEcCCCeEEEEEccCCe
Q 020021          184 IRMFDARKYEK--G-PFDIFSVGG------------DISDANVVKF---------SNDGRLMLLTTMEGHIHVLDSFRGT  239 (332)
Q Consensus       184 i~vwd~~~~~~--~-~~~~~~~~~------------~~~~v~~v~~---------s~dg~~l~~~~~dg~i~i~d~~~~~  239 (332)
                      |+.++......  . +..+....+            .......+++         .++|.++++-..+++|+.++. .|.
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence            98887542110  0 111111000            1123456888         788899998888999999985 565


Q ss_pred             EeEEeeecCC---------------CCCcceEEEEC-CCCCEEEEEcCCCcEEEEECC
Q 020021          240 LLSTYNVKPV---------------SRNSTLEASFS-PEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       240 ~~~~~~~~~~---------------~~~~~~~v~~s-pdg~~l~sgs~Dg~i~vWd~~  281 (332)
                      .. ++.....               .-.....++++ ++|+.+++=.....|+.++++
T Consensus       376 v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          376 VT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            43 2221110               01234568888 566666665666777777653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=0.0023  Score=58.54  Aligned_cols=241  Identities=12%  Similarity=0.146  Sum_probs=135.2

Q ss_pred             EEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCC-c-eeEEEEccCCce
Q 020021           37 ISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-E-SLRLLSLHDNKY  113 (332)
Q Consensus        37 I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d-~-~v~v~d~~~~~~  113 (332)
                      ...|+++| ++..|..+...+.|+.+|+.++....... .......+++.+++..++++...+.. . .+...+. .+..
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~  216 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF  216 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence            46889998 34455555544889999998766543333 33346678999999877666432111 1 2333333 2222


Q ss_pred             E--EEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecC---ceeEEEcCCCeEEEEE--eCCEEE
Q 020021          114 L--RYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVA--FGGYIR  185 (332)
Q Consensus       114 ~--~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~i~  185 (332)
                      .  ..+.. .....+++++| ++..+++-..++.|..+|...+..........   ....++++++..+.++  ..+.|.
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            1  22221 23346778899 67777776677899999987665433333321   2346778877633333  357888


Q ss_pred             EEECccCCC--C-CeeEEEecC------------CCCCce-eEEEc--------CCCCEEEEEcCCCeEEEEEccCCeEe
Q 020021          186 MFDARKYEK--G-PFDIFSVGG------------DISDAN-VVKFS--------NDGRLMLLTTMEGHIHVLDSFRGTLL  241 (332)
Q Consensus       186 vwd~~~~~~--~-~~~~~~~~~------------~~~~v~-~v~~s--------~dg~~l~~~~~dg~i~i~d~~~~~~~  241 (332)
                      .++......  . ...+....+            ...... .++..        ++|.++++-...++|+.++. .|...
T Consensus       296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~  374 (430)
T 3tc9_A          296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVT  374 (430)
T ss_dssp             EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEE
T ss_pred             EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEE
Confidence            887542100  0 001111000            011122 45553        45788888888889999984 56544


Q ss_pred             EEeee----cCC----------CCCcceEEEECCC-CCEEEEEcCCCcEEEEECC
Q 020021          242 STYNV----KPV----------SRNSTLEASFSPE-GMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       242 ~~~~~----~~~----------~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd~~  281 (332)
                      ...-.    ...          .-+....++++|+ +..+++-.....|+.++++
T Consensus       375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            32211    000          0124567899994 6666655666778877653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.13  E-value=0.00012  Score=72.01  Aligned_cols=119  Identities=9%  Similarity=0.110  Sum_probs=77.6

Q ss_pred             cCCC-cEEEEEEC-CCCCEEEEEeC-C----CcEEEEEcCCC-eeeE-EeeecccceeEEEEccCCCEEEEecCCC--CC
Q 020021           32 DYNG-RISSMDFH-KSSSYLVTASD-D----ESIRLYDVTAA-TCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNG--WD  100 (332)
Q Consensus        32 ~h~~-~I~~i~~s-~dg~~l~tgs~-D----~tv~iwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g--~d  100 (332)
                      +|.- .+...+|| |||++||-+.. +    .+|+++|+.++ +.+. .+..   ....++|+++++.+++.....  ..
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCC
Confidence            3443 67889999 99998874332 2    35999999998 6332 1211   134578999999888876421  11


Q ss_pred             ceeEEEEccCCce--EEEee-cccccEEEEEecCCCCeEEEeeC---CCcEEEEeCCCc
Q 020021          101 ESLRLLSLHDNKY--LRYFK-GHHDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAE  153 (332)
Q Consensus       101 ~~v~v~d~~~~~~--~~~~~-~h~~~V~~v~~~~~~~~l~s~s~---Dg~i~iWd~~~~  153 (332)
                      ..|.++++.+++.  ...+. ........+.|+|||++|+..+.   ...|.++|+.++
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            3678888877642  23333 23345678899999998776553   335777888764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.11  E-value=0.0044  Score=54.98  Aligned_cols=243  Identities=11%  Similarity=0.019  Sum_probs=139.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      ...+|....+++.++++  ....|+..++...+....+. .......++|.+....++++..  ..+.|..+++..+...
T Consensus        34 d~~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~  108 (349)
T 3v64_C           34 DRRSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDV--TLDRILRANLNGSNVE  108 (349)
T ss_dssp             TSSCEEESSSCCEEEEE--CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCE
T ss_pred             CCCcccccccCceeEee--cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEec--cCCceEEEecCCCCce
Confidence            33456666664434443  34558888887654433332 2234667889888888887753  2567888888776544


Q ss_pred             EEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEe--cCceeEEEcC-CCeEEEEEe-C-CEEEEEE
Q 020021          115 RYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYDD-QGLVFAVAF-G-GYIRMFD  188 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~-~-~~i~vwd  188 (332)
                      ..+........++++.+. ++..++-...+.|.+.++........+..  ......++++ .+.++.+.. . +.|..++
T Consensus       109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            433333344567888864 45556666778899988765433222211  1123455665 444444433 3 6787777


Q ss_pred             CccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEE
Q 020021          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (332)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~  267 (332)
                      +.-...   .. .........+.++++|++ +++++-...+.|..+|+..... ..+..  ........+++ ..+..+.
T Consensus       189 ~dG~~~---~~-~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~--~~~~~P~giav-~~~~ly~  260 (349)
T 3v64_C          189 MDGSGR---RI-IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVIS--QGLPHPFAITV-FEDSLYW  260 (349)
T ss_dssp             TTSCSC---EE-SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC--SSCSSEEEEEE-ETTEEEE
T ss_pred             CCCCCc---EE-EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEe--CCCCCceEEEE-ECCEEEE
Confidence            643211   11 111122345789999755 5555556778999999764322 22211  11233456777 3556666


Q ss_pred             EEcCCCcEEEEECCCCceEEEec
Q 020021          268 SGSGDGSVYAWSVRSGKEVASWM  290 (332)
Q Consensus       268 sgs~Dg~i~vWd~~~~~~~~~~~  290 (332)
                      +-...+.|...+..+++.+..+.
T Consensus       261 td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          261 TDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EETTTTEEEEEETTTCCSCEEEE
T ss_pred             ecCCCCeEEEEEccCCCccEEec
Confidence            66677889888866776655543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.99  E-value=0.00029  Score=68.26  Aligned_cols=240  Identities=10%  Similarity=0.071  Sum_probs=128.0

Q ss_pred             EEEEcc-CCCEEEEecCCC--------CCceeEEEEccCCceE--EEee-cccccEEEEEecCCCCeEEEeeC-CCcEEE
Q 020021           81 LVCFTS-HPTTVIYSSKNG--------WDESLRLLSLHDNKYL--RYFK-GHHDRVVSLSLCSSKDCFISGSL-DRTVLL  147 (332)
Q Consensus        81 ~~~~~~-~~~~~~~~s~~g--------~d~~v~v~d~~~~~~~--~~~~-~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~i  147 (332)
                      .+++.+ ++..++++....        ....+.+||..+++..  ..+. .+.....++++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            445565 565555553211        0125788998887632  2221 12233345667789999999985 458999


Q ss_pred             EeCCCceEEEEEEecC---ceeEEEcCCCeEEEEEe--C-----CEEEEEECccCCCCCeeEEEe---cCCCCCceeEEE
Q 020021          148 WDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAF--G-----GYIRMFDARKYEKGPFDIFSV---GGDISDANVVKF  214 (332)
Q Consensus       148 Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~-----~~i~vwd~~~~~~~~~~~~~~---~~~~~~v~~v~~  214 (332)
                      ||..+++....-.++.   ...+...+++.++..+.  +     ..+.+||.....   ......   ......-....+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~---W~~~~~~~~~p~~~~~~~~~~  346 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT---WTSLPNAKVNPMLTADKQGLY  346 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE---EEEETTSCSGGGCCCCTTGGG
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc---ceeCCCcccccccccccccee
Confidence            9998876554332221   12334443454444433  2     468889876421   111100   000000001123


Q ss_pred             cCCCCEEEEEcCCC---------eEEEEEccCCeEeEEeeecCC------CCCcceEEEEC-CCCCEEEEEcCCC-----
Q 020021          215 SNDGRLMLLTTMEG---------HIHVLDSFRGTLLSTYNVKPV------SRNSTLEASFS-PEGMFVISGSGDG-----  273 (332)
Q Consensus       215 s~dg~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~------~~~~~~~v~~s-pdg~~l~sgs~Dg-----  273 (332)
                      ..+++.++.++.+|         .+..||..+............      ....-..+.|. .+++.++.|+.++     
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~  426 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  426 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence            35666666665544         567788776653322211111      01122344554 4788888888643     


Q ss_pred             ------cEEEEECCCCceEEEe---cCCCCCCceEEeCCCeeEEEeccc-------------eEEEeccccc
Q 020021          274 ------SVYAWSVRSGKEVASW---MSFDTEPPVIKWTPGSLMFVTGSS-------------ELSFWIPDLS  323 (332)
Q Consensus       274 ------~i~vWd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~t~~~-------------d~~~w~~~~~  323 (332)
                            .|.+||..+.......   +.....-.+....|++++++.|+.             ++.+|++...
T Consensus       427 ~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             cCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence                  6888888776544322   222222244566789999999873             3677776543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.98  E-value=0.0093  Score=54.50  Aligned_cols=227  Identities=13%  Similarity=0.127  Sum_probs=124.8

Q ss_pred             eeEEEEcc-CCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC-CC---cEEEEeCCCc
Q 020021           79 VDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR---TVLLWDQRAE  153 (332)
Q Consensus        79 v~~~~~~~-~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg---~i~iWd~~~~  153 (332)
                      ...+++.| +...++++.. +  +.|+.+|++.+... .+.........++|++++++|+.+.. ++   ...+|-...+
T Consensus       139 P~~lavdp~~~g~Lyv~d~-~--~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g  214 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGE-Q--HPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES  214 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEB-T--EEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred             CCEEEECCCCCCeEEEEeC-C--CcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence            34677876 3555555543 1  67888898776543 33345566889999999995544433 22   1233322222


Q ss_pred             eEE--EEE-EecCceeEEEcC-CCeEEEEEe-CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCC
Q 020021          154 KCQ--GLL-RVQGRPAAAYDD-QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTME  227 (332)
Q Consensus       154 ~~~--~~~-~~~~~~~~~~~~-~~~~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~d  227 (332)
                      ...  ..+ ........++++ ++.++.+.. .+.|..++......  ........ ....+.++|+|+|+ ++++-...
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~--~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET--TPLFTIQD-SGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE--EEEEECSS-SSCCEEEEECTTSSEEEEEETTT
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEEEcCC-CCcceeEEEcCCCCEEEEEECCC
Confidence            211  111 222333456676 666655553 57899998753211  01222221 13357899999999 66666788


Q ss_pred             CeEEEEEccC--CeE--eEEeeecCCC------------CCcce-EEEE--------CCCCCEEEEEcCCCcEEEEECCC
Q 020021          228 GHIHVLDSFR--GTL--LSTYNVKPVS------------RNSTL-EASF--------SPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       228 g~i~i~d~~~--~~~--~~~~~~~~~~------------~~~~~-~v~~--------spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      +.|+.++...  ++.  +..+......            -.... .++.        .++|.++++=.....|+.++ .+
T Consensus       292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~  370 (430)
T 3tc9_A          292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQ  370 (430)
T ss_dssp             TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TT
T ss_pred             CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CC
Confidence            8999988653  322  1122111000            01112 3444        24566666666677898888 45


Q ss_pred             CceEEEecCC---------C---------CCCceEEeCC-CeeEEEeccce
Q 020021          283 GKEVASWMSF---------D---------TEPPVIKWTP-GSLMFVTGSSE  314 (332)
Q Consensus       283 ~~~~~~~~~~---------~---------~~v~~l~~sp-~~~~l~t~~~d  314 (332)
                      ++ +.++...         .         ..+..|++.| ++.++++-...
T Consensus       371 G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  420 (430)
T 3tc9_A          371 GR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDREN  420 (430)
T ss_dssp             SE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             Cc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCC
Confidence            54 3333211         0         1356799999 57777775443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.94  E-value=0.016  Score=57.17  Aligned_cols=211  Identities=9%  Similarity=0.028  Sum_probs=115.0

Q ss_pred             cCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCC----eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           32 DYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      ..-..+.+|+|++.+ .++++-...+.|+.+++...    .....+.........+++...+..++++..  ..+.|.+.
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~--~~~~I~v~  498 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVA  498 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET--TTTEEEEE
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEec--CCCeEEEE
Confidence            334567789998854 45566666778888888642    222223223334567888888888887753  25789999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCCe-EEEeeCC-CcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEE
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDC-FISGSLD-RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI  184 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~-l~s~s~D-g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  184 (332)
                      ++........+........+|++.|.+.. ++|-... +.|...++........+                         
T Consensus       499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv-------------------------  553 (791)
T 3m0c_C          499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-------------------------  553 (791)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-------------------------
T ss_pred             eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE-------------------------
Confidence            98765443334444556788998886443 3433222 44555444322111000                         


Q ss_pred             EEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCC
Q 020021          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (332)
Q Consensus       185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg  263 (332)
                                        .......+.+++++.+ +++++-...+.|..+|+..... ..+............+++.. +
T Consensus       554 ------------------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~-~  613 (791)
T 3m0c_C          554 ------------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-D  613 (791)
T ss_dssp             ------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET-T
T ss_pred             ------------------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeC-C
Confidence                              0011234567888654 4444445567888888754332 22221111112334555533 3


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEe
Q 020021          264 MFVISGSGDGSVYAWSVRSGKEVASW  289 (332)
Q Consensus       264 ~~l~sgs~Dg~i~vWd~~~~~~~~~~  289 (332)
                      +.+.+-...+.|...|..+++.+..+
T Consensus       614 ~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          614 KVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEEECCCCEEEEEeCCCCcceEEe
Confidence            44444456678888887777665554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.89  E-value=0.01  Score=51.71  Aligned_cols=226  Identities=13%  Similarity=0.073  Sum_probs=131.2

Q ss_pred             CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC----CceEEEeecccccEEEEEecC
Q 020021           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----NKYLRYFKGHHDRVVSLSLCS  131 (332)
Q Consensus        56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~----~~~~~~~~~h~~~V~~v~~~~  131 (332)
                      ..|+..|+.+.+....+.. ......+++.+....++++..  ..+.|..+++..    ......+........++++.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~--~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~   86 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW   86 (316)
T ss_dssp             SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEEC--CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence            5688888887665444432 234567888888778887753  257888888875    222222332334457888886


Q ss_pred             C-CCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcC-CCeEEEEEeC--CEEEEEECccCCCCCeeEEEecCC
Q 020021          132 S-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDD-QGLVFAVAFG--GYIRMFDARKYEKGPFDIFSVGGD  205 (332)
Q Consensus       132 ~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~--~~i~vwd~~~~~~~~~~~~~~~~~  205 (332)
                      . ++..++-...+.|.+.|+........+...  .....++++ .+.++.+..+  +.|..+++.-.   ....+ ....
T Consensus        87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---~~~~~-~~~~  162 (316)
T 1ijq_A           87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSL-VTEN  162 (316)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEE-ECSS
T ss_pred             cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---CeEEE-EECC
Confidence            4 455566677889999998755443333211  222455665 4555444433  57877776421   11111 1122


Q ss_pred             CCCceeEEEcCCCC-EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 020021          206 ISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       206 ~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~  284 (332)
                      ....+.++++|++. ++++-...+.|..+|... .....+............+++. .++.+.+-...+.|..++..+++
T Consensus       163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence            23467899998754 555556778999999864 3223332111112234466774 45666666777899999987777


Q ss_pred             eEEEec
Q 020021          285 EVASWM  290 (332)
Q Consensus       285 ~~~~~~  290 (332)
                      .+..+.
T Consensus       241 ~~~~i~  246 (316)
T 1ijq_A          241 DVNLLA  246 (316)
T ss_dssp             CCEEEE
T ss_pred             ceEEEe
Confidence            655543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.89  E-value=0.014  Score=53.31  Aligned_cols=228  Identities=11%  Similarity=0.136  Sum_probs=127.5

Q ss_pred             eeEEEEccC--CCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCC---Cc-EEEEeCCC
Q 020021           79 VDLVCFTSH--PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD---RT-VLLWDQRA  152 (332)
Q Consensus        79 v~~~~~~~~--~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~D---g~-i~iWd~~~  152 (332)
                      ...+++.++  ...++++.. +  +.|+.+|.++++.. .+.+......+++++++++.+++-...   .. +...+...
T Consensus       141 P~gvavd~~s~~g~Lyv~D~-~--~~I~~id~~~g~v~-~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQ-R--DAFRHVDFVNQYVD-IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECB-T--SCEEEEETTTTEEE-EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred             CceEEEccccCCCEEEEEeC-C--CCEEEEECCCCEEE-EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence            346788874  445655533 1  68899998776644 344455668899999999965555421   12 22222211


Q ss_pred             ceE-EEEE-EecCceeEEEcC-CCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCC
Q 020021          153 EKC-QGLL-RVQGRPAAAYDD-QGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTME  227 (332)
Q Consensus       153 ~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~d  227 (332)
                      +.. ...+ ........++++ .+.++.+. .++.|+.+|...... ......... ......++++|+|+ ++++-...
T Consensus       217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~-~~~~~~~~~-~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL-TEEEVMMDT-KGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE-EEEEEECSC-CSSCEEEEECTTSSEEEEEETTT
T ss_pred             CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE-EEEEeccCC-CCCcccEEEeCCCCEEEEEeCCC
Confidence            110 0111 122223345666 56555444 357888888753211 011222221 12234699999998 66666778


Q ss_pred             CeEEEEEcc--CCeEe--EEeeecCC------------CCCcceEEEE---------CCCCCEEEEEcCCCcEEEEECCC
Q 020021          228 GHIHVLDSF--RGTLL--STYNVKPV------------SRNSTLEASF---------SPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       228 g~i~i~d~~--~~~~~--~~~~~~~~------------~~~~~~~v~~---------spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      +.|+.+|..  ++...  ..+.....            .-+....+++         .++|+++++=...+.|+.++. +
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~  373 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-E  373 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-T
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-C
Confidence            899998865  33221  11111100            0122345888         788888887777889999985 5


Q ss_pred             CceEEEecCCC------------------CCCceEEeC-CCeeEEEeccce
Q 020021          283 GKEVASWMSFD------------------TEPPVIKWT-PGSLMFVTGSSE  314 (332)
Q Consensus       283 ~~~~~~~~~~~------------------~~v~~l~~s-p~~~~l~t~~~d  314 (332)
                      +. +.++....                  ..+..|++. +++.++++-...
T Consensus       374 G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  423 (433)
T 4hw6_A          374 GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN  423 (433)
T ss_dssp             SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence            54 44332211                  124568898 678777775544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.80  E-value=0.039  Score=56.78  Aligned_cols=278  Identities=10%  Similarity=0.099  Sum_probs=144.5

Q ss_pred             CCCcEEEEEECCC------CCEEEEEeC-CCcEEEEEcCCCeeeEEeeec-ccceeEEEEcc--CCCEEEEecCCCCCce
Q 020021           33 YNGRISSMDFHKS------SSYLVTASD-DESIRLYDVTAATCLKTINSK-KYGVDLVCFTS--HPTTVIYSSKNGWDES  102 (332)
Q Consensus        33 h~~~I~~i~~s~d------g~~l~tgs~-D~tv~iwd~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~~~~~s~~g~d~~  102 (332)
                      -.+.|.|+++.|.      +++++.|.+ |++++|+++.+.+.+....-. ......+++..  ...+++.+-.   |+.
T Consensus       552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~---dG~  628 (1158)
T 3ei3_A          552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALG---DGA  628 (1158)
T ss_dssp             CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEET---TSE
T ss_pred             CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeC---CCe
Confidence            3568999999864      368999997 999999999887666433221 11223333322  2234454433   445


Q ss_pred             eEEEE--ccCCceE---EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc---eeEEEcC---
Q 020021          103 LRLLS--LHDNKYL---RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDD---  171 (332)
Q Consensus       103 v~v~d--~~~~~~~---~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~---~~~~~~~---  171 (332)
                      +..+.  ..+++..   ..+-| ..++.=..+...+..-+-+..++...++--+ ++.. .......   ..+.++.   
T Consensus       629 l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~-~s~l~~~~v~~~~~F~se~~  705 (1158)
T 3ei3_A          629 LFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLV-FSNVNLKEVNYMCPLNSDGY  705 (1158)
T ss_dssp             EEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEE-EEEBSSSCCCEEEEECCSSS
T ss_pred             EEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceE-EeccChHHhceEeccCcccC
Confidence            44333  3344321   12223 2344333333333322223334444444322 2211 1111111   1233322   


Q ss_pred             CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC-------------------------
Q 020021          172 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-------------------------  226 (332)
Q Consensus       172 ~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~-------------------------  226 (332)
                      +..++ ...++.+++..+...+  .+......- ...++.++++|+.+.++....                         
T Consensus       706 ~~g~v-~~~~~~LrI~~i~~~~--~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  781 (1158)
T 3ei3_A          706 PDSLA-LANNSTLTIGTIDEIQ--KLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSS  781 (1158)
T ss_dssp             TTEEE-EECSSCEEEEEECCSS--SEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEE
T ss_pred             CCcEE-EEcCCceEEEEecccC--CeeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhh
Confidence            12333 3445668888765442  232222111 124566677776655443321                         


Q ss_pred             ------------------------CCeEEEEEccCCeEeEEeeecCCCCCcceE---EEECCC-CCEEEEEc--------
Q 020021          227 ------------------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLE---ASFSPE-GMFVISGS--------  270 (332)
Q Consensus       227 ------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---v~~spd-g~~l~sgs--------  270 (332)
                                              -..|+++|..+.+.+..+.....  ..+.+   +.|..+ ..+++.|.        
T Consensus       782 ~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n--E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~  859 (1158)
T 3ei3_A          782 SVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN--EYALSLVSCKLGKDPNTYFIVGTAMVYPEEA  859 (1158)
T ss_dssp             EECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTT--EEEEEEEEECCTTCCCCEEEEEEEECCTTCS
T ss_pred             cccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC--cceEEEEEEEEccCCCEEEEEEeeecCCCCC
Confidence                                    12478888888887777765432  22233   234333 46888775        


Q ss_pred             --CCCcEEEEECCCCceEEEe--cCCCCCCceEEeCCCeeEEEeccceEEEecccccc
Q 020021          271 --GDGSVYAWSVRSGKEVASW--MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK  324 (332)
Q Consensus       271 --~Dg~i~vWd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~  324 (332)
                        .-|.|+++++.+++ +..+  ....+++.+|+- -+|+++++.+..+.+|++...+
T Consensus       860 ~~~~Gri~vf~v~~~k-L~lv~~~~v~g~v~al~~-~~g~Lla~ig~~l~vy~l~~~~  915 (1158)
T 3ei3_A          860 EPKQGRIVVFQYSDGK-LQTVAEKEVKGAVYSMVE-FNGKLLASINSTVRLYEWTTEK  915 (1158)
T ss_dssp             SCCCEEEEEEEEETTE-EEEEEEEEESSCEEEEEE-ETTEEEEEETTEEEEEEECTTS
T ss_pred             CCCceEEEEEEEECCE-EEEEEEEEcCCcCEEEee-eCCEEEEEcCCEEEEEECCCCc
Confidence              34789999997543 2222  234567777772 2568888888889999986543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.77  E-value=0.0017  Score=63.87  Aligned_cols=156  Identities=9%  Similarity=0.064  Sum_probs=85.9

Q ss_pred             cEEEEEec-CCCCeEEEee-CCC----cEEEEeCCCc-eEEE-EEEecCceeEEEcCCC-eEEEEEeC-----CEEEEEE
Q 020021          123 RVVSLSLC-SSKDCFISGS-LDR----TVLLWDQRAE-KCQG-LLRVQGRPAAAYDDQG-LVFAVAFG-----GYIRMFD  188 (332)
Q Consensus       123 ~V~~v~~~-~~~~~l~s~s-~Dg----~i~iWd~~~~-~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-----~~i~vwd  188 (332)
                      .+....|| |||++|+-+. .+|    +|+++|+.++ .... .+.. ......+++++ .++.+..+     ..|..++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~-~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG-TNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE-ECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC-ceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            57788999 9999887443 233    5999999887 5221 1111 12234566766 45555554     2577777


Q ss_pred             CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC---CCeEEEEEccCCe-Ee--EEeeecCCCCCcceEEEECCC
Q 020021          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGT-LL--STYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~---dg~i~i~d~~~~~-~~--~~~~~~~~~~~~~~~v~~spd  262 (332)
                      +.........++.... ..-...+.+||||++|+....   ...|+++|+.++. ..  ..+.  .........+.|+.+
T Consensus       254 lgt~~~~~~lv~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~s~~~~~g  330 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHN-PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR--PREKGVRYDVQMHGT  330 (751)
T ss_dssp             TTSCGGGCEEEEECCC-TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS--CCCTTCCEEEEEETT
T ss_pred             CCCCchhcEEEEecCC-CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee--cCCCCceEEEeeeeC
Confidence            7543222222332211 122356789999998887653   3478889987652 11  2221  112233334444444


Q ss_pred             CCEEEEEcCC----CcEEEEECCC
Q 020021          263 GMFVISGSGD----GSVYAWSVRS  282 (332)
Q Consensus       263 g~~l~sgs~D----g~i~vWd~~~  282 (332)
                      +.+++....+    ..|..+|+.+
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCC
Confidence            4445554443    2677777764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.76  E-value=0.00066  Score=66.22  Aligned_cols=238  Identities=13%  Similarity=0.089  Sum_probs=129.6

Q ss_pred             CCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC----CceEEEeecccccEEEEEe
Q 020021           54 DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----NKYLRYFKGHHDRVVSLSL  129 (332)
Q Consensus        54 ~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~----~~~~~~~~~h~~~V~~v~~  129 (332)
                      ..+.|+..++.+.+....+... ..+..++|.+....++++..  ..+.|+.+++..    ......+........++++
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~--~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCT--TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred             CccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEec--CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence            3457888888766554433322 23456788887778887743  256788888865    2222222222233456777


Q ss_pred             cC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcCC-CeEEEEEe-C-CEEEEEECccCCCCCeeEEEec
Q 020021          130 CS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQ-GLVFAVAF-G-GYIRMFDARKYEKGPFDIFSVG  203 (332)
Q Consensus       130 ~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~-~-~~i~vwd~~~~~~~~~~~~~~~  203 (332)
                      .+ .++.+++-...+.|.+.++........+...  .....++++. +.++.+.. . +.|..+++.....   ..+ ..
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---~~l-~~  536 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSL-VT  536 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---CEE-SC
T ss_pred             EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---eEE-Ee
Confidence            75 4556666667789999998765433332211  1123455543 33333222 2 5666666532111   111 11


Q ss_pred             CCCCCceeEEEcCC-CCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          204 GDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       204 ~~~~~v~~v~~s~d-g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      ......+.++++|+ ++++++-...+.|..+|+..... ..+............+++..+ +.+.+....+.|..++..+
T Consensus       537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred             CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence            12234578999987 46666667788999999864322 222211111122334565454 4555566678999999888


Q ss_pred             CceEEEecCCCCCCceEE
Q 020021          283 GKEVASWMSFDTEPPVIK  300 (332)
Q Consensus       283 ~~~~~~~~~~~~~v~~l~  300 (332)
                      ++.+..+......+..|+
T Consensus       615 G~~~~~i~~~~~~P~~i~  632 (699)
T 1n7d_A          615 GSDVNLLAENLLSPEDMV  632 (699)
T ss_dssp             EEEEECCCTTCSSCCCCC
T ss_pred             CCceEEeecCCCCCcEEE
Confidence            887766543222344444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.69  E-value=0.028  Score=50.74  Aligned_cols=228  Identities=12%  Similarity=0.087  Sum_probs=132.6

Q ss_pred             CCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC----ceEEEeecccccEEEEEe
Q 020021           54 DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----KYLRYFKGHHDRVVSLSL  129 (332)
Q Consensus        54 ~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~----~~~~~~~~h~~~V~~v~~  129 (332)
                      ....|+..|+...+....+ .....+..++|.+....++++..  ..+.|..+++...    .....+........++++
T Consensus        90 ~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~--~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav  166 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  166 (400)
T ss_dssp             ETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEET--TTTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred             ccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEec--CCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence            3467888888765543333 23345677899988888888753  2567888887652    223333334456788888


Q ss_pred             cC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcC-CCeEEEEEe--CCEEEEEECccCCCCCeeEEEec
Q 020021          130 CS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDD-QGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVG  203 (332)
Q Consensus       130 ~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~--~~~i~vwd~~~~~~~~~~~~~~~  203 (332)
                      .+ .++..++-...+.|.+.++........+...  .....++++ .+.++-+..  .+.|...++.-..  .. .+ ..
T Consensus       167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~--~~-~~-~~  242 (400)
T 3p5b_L          167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IY-SL-VT  242 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS--CE-EE-EC
T ss_pred             EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc--cE-EE-EE
Confidence            87 4556666677788999988765544333322  122445665 444443332  2567777764321  11 11 11


Q ss_pred             CCCCCceeEEEcCCCCEE-EEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          204 GDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       204 ~~~~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      ......+.+++++++..| .+-...+.|..+|+.... ...+............+++ ..++.+.+-...+.|..+|..+
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~  320 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLT  320 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSS
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCC
Confidence            222355789999866554 555667899999986433 2233221112233345666 2345555666778899999777


Q ss_pred             CceEEEec
Q 020021          283 GKEVASWM  290 (332)
Q Consensus       283 ~~~~~~~~  290 (332)
                      ++.+..+.
T Consensus       321 G~~~~~i~  328 (400)
T 3p5b_L          321 GSDVNLLA  328 (400)
T ss_dssp             CCCCEEEE
T ss_pred             CCceEEEe
Confidence            77655543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.66  E-value=0.027  Score=49.65  Aligned_cols=197  Identities=12%  Similarity=0.240  Sum_probs=115.0

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEcc----CCCE--EEEecCCCC--CceeEEEEcc--CCceE
Q 020021           45 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS----HPTT--VIYSSKNGW--DESLRLLSLH--DNKYL  114 (332)
Q Consensus        45 dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--~~~~s~~g~--d~~v~v~d~~--~~~~~  114 (332)
                      ...++++....+-+.+||+ +|+.++.+...  .+..+.+.+    .++.  +++++. .-  +++++++++.  +++ +
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g--~~nnVD~r~~~~l~g~~~dla~as~-R~~~~n~l~vf~iDp~~~~-l  113 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTG--KLNNVDIRYDFPLNGKKVDIAAASN-RSEGKNTIEIYAIDGKNGT-L  113 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCS--CEEEEEEEEEEEETTEEEEEEEEEE-CSTTCCEEEEEEECTTTCC-E
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCC--CcccEEEecccccCCceEeEEEEeC-CCCCCCeEEEEEECCCCCc-e
Confidence            3467777888899999999 88988888642  233333333    3333  445443 33  5789999773  333 4


Q ss_pred             EEeec------cc-ccEEEEEe--cCC-CC-eEEEeeCCCcEEEEeCC-------CceEEEEEEecCce-eEEEcCC-Ce
Q 020021          115 RYFKG------HH-DRVVSLSL--CSS-KD-CFISGSLDRTVLLWDQR-------AEKCQGLLRVQGRP-AAAYDDQ-GL  174 (332)
Q Consensus       115 ~~~~~------h~-~~V~~v~~--~~~-~~-~l~s~s~Dg~i~iWd~~-------~~~~~~~~~~~~~~-~~~~~~~-~~  174 (332)
                      ..+..      .. ..+.++++  ++. ++ +++....+|.+..|++.       +.+.+..+.+...+ .++.++. +.
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~  193 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR  193 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence            44422      11 45667777  664 44 57777788999999873       23445555554433 4555654 45


Q ss_pred             EEEEEeCCEEEEEECccCCCCCeeEE-Ee-cCC-CCCceeEEE--cCCCC-EEEEEc-CCCeEEEEEcc-CCeEeEEeee
Q 020021          175 VFAVAFGGYIRMFDARKYEKGPFDIF-SV-GGD-ISDANVVKF--SNDGR-LMLLTT-MEGHIHVLDSF-RGTLLSTYNV  246 (332)
Q Consensus       175 ~~~~~~~~~i~vwd~~~~~~~~~~~~-~~-~~~-~~~v~~v~~--s~dg~-~l~~~~-~dg~i~i~d~~-~~~~~~~~~~  246 (332)
                      ++.+-.+..|..++.+-......... .. .++ ..++..+++  .++|+ ++++++ .+....+||.. +.+.+..|..
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~I  273 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRI  273 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEe
Confidence            55444455565556442211111112 22 122 236777777  56665 444444 67799999986 5666666653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.62  E-value=0.035  Score=49.85  Aligned_cols=204  Identities=7%  Similarity=0.015  Sum_probs=120.1

Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           35 GRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        35 ~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      ..+.+++|++.+. ++.+-...+.|..++.+.......+.........+++.+.+..++++..  ..+.|.+.++.....
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~--~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS--GTSRIEVANLDGAHR  193 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEET--TTTEEEECBTTSCSC
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcC--CCCeEEEEeCCCCce
Confidence            4467899997554 5556667788999998866543333322233456788877777777643  256788888765443


Q ss_pred             EEEeecccccEEEEEecCCCC-eEEEeeCC-CcEEEEeCCCceEEEEEEe--cCceeEEEcC-CCeEEEEE-eCCEEEEE
Q 020021          114 LRYFKGHHDRVVSLSLCSSKD-CFISGSLD-RTVLLWDQRAEKCQGLLRV--QGRPAAAYDD-QGLVFAVA-FGGYIRMF  187 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~~~-~l~s~s~D-g~i~iWd~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~-~~~~i~vw  187 (332)
                      ...+........++++.|.+. ++++-... +.|...++...........  .......+++ .+.++.+- ..+.|..+
T Consensus       194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~  273 (386)
T 3v65_B          194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  273 (386)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence            333444446678999998655 44454444 6788877754332222211  1123455654 34443333 34788888


Q ss_pred             ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (332)
                      |+....  ...+..  ........+++ .++.++.+....+.|..+|..+|+.+..+.
T Consensus       274 d~dG~~--~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          274 NLDGSH--RKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             CTTSCS--CEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             eCCCCe--eEEEEE--CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            865321  111111  11233456777 456777777788899999876776655554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.59  E-value=0.032  Score=48.70  Aligned_cols=225  Identities=12%  Similarity=0.047  Sum_probs=126.9

Q ss_pred             CCcEEEEEcCCCee-eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce-EEEeecccccEEEEEecC-
Q 020021           55 DESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFKGHHDRVVSLSLCS-  131 (332)
Q Consensus        55 D~tv~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~-~~~~~~h~~~V~~v~~~~-  131 (332)
                      ...|+..|+..... ...+.........+.|.+....++++..  ..+.|..+++..+.. ...+........++++.+ 
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~--~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~   89 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV--SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   89 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET--TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC--CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence            46788889876531 1111111223456788887777877753  256788888876532 122222234456788876 


Q ss_pred             CCCeEEEeeCCCcEEEEeCCCceEEEEEEe--cCceeEEEcC-CCeEEEEEe--CCEEEEEECccCCCCCeeEEEecCCC
Q 020021          132 SKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYDD-QGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDI  206 (332)
Q Consensus       132 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~--~~~i~vwd~~~~~~~~~~~~~~~~~~  206 (332)
                      .++..++-...+.|.+.++........+..  ......++++ .+.++.+..  .+.|..+++.-..   ...+ .....
T Consensus        90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~-~~~~l  165 (318)
T 3sov_A           90 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFII-INSEI  165 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEE-ECSSC
T ss_pred             CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEE-EECCC
Confidence            455666666778899998765432222211  1122345554 344444432  3677777764211   1111 11122


Q ss_pred             CCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          207 SDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       207 ~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                      ...+.++++|++ +++.+-+..+.|..+|+.... ...+..  ........+++.. +..+.+-...+.|..++..+++.
T Consensus       166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~--~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC--SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec--CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence            345789999855 555566677899999986432 222221  1123344666643 45555666778999999877776


Q ss_pred             EEEe
Q 020021          286 VASW  289 (332)
Q Consensus       286 ~~~~  289 (332)
                      +..+
T Consensus       242 ~~~i  245 (318)
T 3sov_A          242 LREI  245 (318)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            5544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.44  E-value=0.054  Score=47.84  Aligned_cols=204  Identities=7%  Similarity=0.018  Sum_probs=121.1

Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           35 GRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        35 ~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      ..+.+++|++.+. ++.+-...+.|..++.+.......+.........+++.+.+..++++..  ..+.|.+.++.....
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~--~~~~I~~~~~dG~~~  150 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS--GTSRIEVANLDGAHR  150 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET--TTTEEEEEETTSCSC
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcC--CCCeEEEEcCCCCce
Confidence            3467899997554 4555566788988998765543333322234567788877777777643  256888888876543


Q ss_pred             EEEeecccccEEEEEecCCCC-eEEEeeCC-CcEEEEeCCCceEEEEEE--ecCceeEEEcC-CCeEEEEE-eCCEEEEE
Q 020021          114 LRYFKGHHDRVVSLSLCSSKD-CFISGSLD-RTVLLWDQRAEKCQGLLR--VQGRPAAAYDD-QGLVFAVA-FGGYIRMF  187 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~~~-~l~s~s~D-g~i~iWd~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~-~~~~i~vw  187 (332)
                      ...+........++++.|.+. .+++-... +.|...++........+.  .......++++ .+.++.+- ..+.|..+
T Consensus       151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~  230 (349)
T 3v64_C          151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  230 (349)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence            333444445678999998554 45555444 778888775433222111  11123456664 44444333 34788888


Q ss_pred             ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (332)
                      |+.-..  ...+..  ........+++ .++.++.+-...+.|..+|..+|+....+.
T Consensus       231 ~~dG~~--~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          231 NLDGSH--RKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             ETTSCS--CEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             eCCCCc--eEEEEe--CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            875321  111111  11233456777 466777777788889888876676555443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.38  E-value=0.058  Score=46.86  Aligned_cols=205  Identities=9%  Similarity=0.054  Sum_probs=117.9

Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCcEEEEEcCC---CeeeEE-eeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           35 GRISSMDFHKSSS-YLVTASDDESIRLYDVTA---ATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        35 ~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~---~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      ..+.++.|+++++ ++.+-...+.|..+++..   +..... +...-.....+++.+.+..++++..  ..+.|.+.++.
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~--~~~~I~~~~~~  107 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADTK  107 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET--TTTEEEEEETT
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEEC--CCCEEEEEeCC
Confidence            4567999998654 556666678999999875   122222 2222234567888876777776643  25789999987


Q ss_pred             CCceEEEeecccccEEEEEecCCCCe-EEEeeCC-CcEEEEeCCCceEEEEEE--ecCceeEEEcCC-CeEEEEE-eCCE
Q 020021          110 DNKYLRYFKGHHDRVVSLSLCSSKDC-FISGSLD-RTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQ-GLVFAVA-FGGY  183 (332)
Q Consensus       110 ~~~~~~~~~~h~~~V~~v~~~~~~~~-l~s~s~D-g~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~-~~~~  183 (332)
                      .......+........++++.|.+.. +++-... +.|...++..........  ........+++. +.++.+. ..+.
T Consensus       108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~  187 (316)
T 1ijq_A          108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (316)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence            54433333334456789999986554 4444333 678777775433221211  112234566654 4444343 3478


Q ss_pred             EEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe
Q 020021          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (332)
Q Consensus       184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (332)
                      |..+|.....  ...+............+++. ++.++.+....+.|..+|..+|+.+..+
T Consensus       188 I~~~d~dg~~--~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          188 ISSIDVNGGN--RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEETTSCS--CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEecCCCc--eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            9999875321  11122211122234567774 4677777778889999998777665544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.37  E-value=0.049  Score=45.84  Aligned_cols=197  Identities=7%  Similarity=0.059  Sum_probs=112.7

Q ss_pred             EeecccccEEEEEecCCCCeEEE-eeCCCcEEEEeCCCceEEEEEEecC---ceeEEEcCCCeEEEEE-eCCEEEEEECc
Q 020021          116 YFKGHHDRVVSLSLCSSKDCFIS-GSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVA-FGGYIRMFDAR  190 (332)
Q Consensus       116 ~~~~h~~~V~~v~~~~~~~~l~s-~s~Dg~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~i~vwd~~  190 (332)
                      -+.|-.+.+.+++++|+++.|.+ ...++.|...|.. ++....+...+   .....+..++.++.+. .++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            34556678999999998776655 5567788888887 66666655432   2344555666554443 34677777765


Q ss_pred             cCCC-CCeeEEEec----CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc---CCeEeEEeee----cCCCCCcceEEE
Q 020021          191 KYEK-GPFDIFSVG----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF---RGTLLSTYNV----KPVSRNSTLEAS  258 (332)
Q Consensus       191 ~~~~-~~~~~~~~~----~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~---~~~~~~~~~~----~~~~~~~~~~v~  258 (332)
                      .... .........    ........++++|++..+.++.......+|...   ....+.....    ..........++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            3221 011112111    112356789999998666555554444444432   1111111110    011223345789


Q ss_pred             ECCCC-CEEEEEcCCCcEEEEECCCCceEEEecCCC---------CCCceEEeCCCeeEEEeccce
Q 020021          259 FSPEG-MFVISGSGDGSVYAWSVRSGKEVASWMSFD---------TEPPVIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       259 ~spdg-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~---------~~v~~l~~sp~~~~l~t~~~d  314 (332)
                      |.|.. ++++.....+.+-++|.. ++.+..+.-..         ...-.|+|.|+|++.++.-..
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n  244 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN  244 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc
Confidence            99865 455555666788899864 56544432111         134669999999988886555

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.35  E-value=0.037  Score=49.06  Aligned_cols=187  Identities=15%  Similarity=0.192  Sum_probs=101.4

Q ss_pred             EEEecCCCCeEEEee------------CCCcEEEEeCCC--ceEEEEEEecC--------ce-eEEE-c-CCC--eEEEE
Q 020021          126 SLSLCSSKDCFISGS------------LDRTVLLWDQRA--EKCQGLLRVQG--------RP-AAAY-D-DQG--LVFAV  178 (332)
Q Consensus       126 ~v~~~~~~~~l~s~s------------~Dg~i~iWd~~~--~~~~~~~~~~~--------~~-~~~~-~-~~~--~~~~~  178 (332)
                      .+.+.|+|..+++++            .+|.|.++|.++  .+.. .+...+        .+ ...+ . .++  .++.+
T Consensus        54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv  132 (355)
T 3sre_A           54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  132 (355)
T ss_dssp             EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence            444566665555542            689999999873  2322 222211        11 1111 1 123  23333


Q ss_pred             Ee---CCEEEEEECccCCCCCee-EEEecCC-CCCceeEEEcCCCCEEEEEcC-----------------CCeEEEEEcc
Q 020021          179 AF---GGYIRMFDARKYEKGPFD-IFSVGGD-ISDANVVKFSNDGRLMLLTTM-----------------EGHIHVLDSF  236 (332)
Q Consensus       179 ~~---~~~i~vwd~~~~~~~~~~-~~~~~~~-~~~v~~v~~s~dg~~l~~~~~-----------------dg~i~i~d~~  236 (332)
                      -.   +..|.+|++..... ... .....+. ....+.+++.++|+++++...                 .|.++-+|..
T Consensus       133 nh~~~~s~ielf~~d~~~~-~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~  211 (355)
T 3sre_A          133 NHPGSSSTVEVFKFQEEEK-SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  211 (355)
T ss_dssp             ECSTTCCEEEEEEEETTTT-EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             ECCCCCCeEEEEEEECCCC-EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence            21   45778887654321 122 2223332 235688999999998887651                 2566666653


Q ss_pred             CCeEeEEeeecCCCCCcceEEEECCCCCEEEEE-cCCCcEEEEECCC-Cce--EEEecCCCCCCceEEeCC-CeeEEEec
Q 020021          237 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVYAWSVRS-GKE--VASWMSFDTEPPVIKWTP-GSLMFVTG  311 (332)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg-s~Dg~i~vWd~~~-~~~--~~~~~~~~~~v~~l~~sp-~~~~l~t~  311 (332)
                      .-+.+.  .    .-...+.++||||+++|+.+ +..+.|+.|++.. ++.  ...+ .....+.-++..+ +|++.+++
T Consensus       212 ~~~~~~--~----~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          212 DVRVVA--E----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             CCEEEE--E----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred             eEEEee--c----CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence            222211  1    01234579999999877766 5678999999863 332  1223 2344456688888 58887765


Q ss_pred             cc---eEEEeccc
Q 020021          312 SS---ELSFWIPD  321 (332)
Q Consensus       312 ~~---d~~~w~~~  321 (332)
                      ..   .+..++|+
T Consensus       285 ~~~g~~v~~~~P~  297 (355)
T 3sre_A          285 HPNGMRIFFYDAE  297 (355)
T ss_dssp             ESCHHHHHSCCTT
T ss_pred             cCCceEEEEECCC
Confidence            32   24444554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.32  E-value=0.031  Score=48.82  Aligned_cols=155  Identities=13%  Similarity=0.150  Sum_probs=98.1

Q ss_pred             EEEEecCCCCeEEEe-eCCCcEEEEeCCCceEEEEEEecC----------ceeEEE---cCCCeEEEEEe----------
Q 020021          125 VSLSLCSSKDCFISG-SLDRTVLLWDQRAEKCQGLLRVQG----------RPAAAY---DDQGLVFAVAF----------  180 (332)
Q Consensus       125 ~~v~~~~~~~~l~s~-s~Dg~i~iWd~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~----------  180 (332)
                      -+++|.+...+|.-+ -..++|..||...+..... ..+.          .....+   ++.+.++.+..          
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            356777744444444 4789999999875543333 2222          124455   46676666543          


Q ss_pred             ----CCEEEEEECc---cCCCCCeeEEEecC-----------CCCCceeEEEcCCCCEEEEEcCC-CeEEEEEccCCeEe
Q 020021          181 ----GGYIRMFDAR---KYEKGPFDIFSVGG-----------DISDANVVKFSNDGRLMLLTTME-GHIHVLDSFRGTLL  241 (332)
Q Consensus       181 ----~~~i~vwd~~---~~~~~~~~~~~~~~-----------~~~~v~~v~~s~dg~~l~~~~~d-g~i~i~d~~~~~~~  241 (332)
                          +..+..+|+.   +.+  ......+..           .....+.+++.++|..+++++.- +.|..++... +.+
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~--~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~  171 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSK--PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTV  171 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCC--CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCE
T ss_pred             ccCCCCEEEEEcCCcCCCCC--EEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEE
Confidence                4678899987   332  121222210           11246789999999999999888 8988888663 333


Q ss_pred             EEeeecC---CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCC
Q 020021          242 STYNVKP---VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       242 ~~~~~~~---~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~  283 (332)
                      ..+....   ........++++|||+.|+....+|.+..+|+.+.
T Consensus       172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            3332211   11112457899999999998877999999999754

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.30  E-value=0.11  Score=48.20  Aligned_cols=248  Identities=11%  Similarity=0.142  Sum_probs=138.0

Q ss_pred             EEEEEECCC-C-CEEEEEeCCCcEEEEEcCCCeeeEEeeecc---cceeEEEE-------ccCCCEEEEecCCCC----C
Q 020021           37 ISSMDFHKS-S-SYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCF-------TSHPTTVIYSSKNGW----D  100 (332)
Q Consensus        37 I~~i~~s~d-g-~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~---~~v~~~~~-------~~~~~~~~~~s~~g~----d  100 (332)
                      ...|+|+|. + +++++-...+.|++.|+.++.....+....   .....++|       .+++..++.+...+.    .
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            458999983 4 455554445778888988877655443321   23567889       999987777654321    1


Q ss_pred             ceeEEEEccC-CceE-----EEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCC-------CceE-----------
Q 020021          101 ESLRLLSLHD-NKYL-----RYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQR-------AEKC-----------  155 (332)
Q Consensus       101 ~~v~v~d~~~-~~~~-----~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~-------~~~~-----------  155 (332)
                      ..+.+.+... +...     ..+... ....+++++|+ +.++++-..++.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence            2355554333 2221     222211 23356788894 5556666778889999986       4432           


Q ss_pred             E-EEEEecC---ceeEEEcCCCeEEEEE--eCCEEEEEECccCCC---CCeeEEEe---cC---------CCCCce-eEE
Q 020021          156 Q-GLLRVQG---RPAAAYDDQGLVFAVA--FGGYIRMFDARKYEK---GPFDIFSV---GG---------DISDAN-VVK  213 (332)
Q Consensus       156 ~-~~~~~~~---~~~~~~~~~~~~~~~~--~~~~i~vwd~~~~~~---~~~~~~~~---~~---------~~~~v~-~v~  213 (332)
                      . ..+....   ....++++++..+..+  ..+.|+.++......   .+..+...   .+         ...... .++
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~  379 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF  379 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence            1 1222221   1246778877643333  357888866432110   00111111   00         011123 455


Q ss_pred             Ec-------CCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC---------------------CCCcceEEEECCC-CC
Q 020021          214 FS-------NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---------------------SRNSTLEASFSPE-GM  264 (332)
Q Consensus       214 ~s-------~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------------~~~~~~~v~~spd-g~  264 (332)
                      ..       ++|.++++-..+.+|+.++ ..|.. .++.....                     .-+....++++++ |.
T Consensus       380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~  457 (496)
T 3kya_A          380 VKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM  457 (496)
T ss_dssp             EECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred             EccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence            54       5788888888899999999 45643 34432210                     0123456888886 66


Q ss_pred             EEEEEcCCCcEEEEECCCCceEE
Q 020021          265 FVISGSGDGSVYAWSVRSGKEVA  287 (332)
Q Consensus       265 ~l~sgs~Dg~i~vWd~~~~~~~~  287 (332)
                      .+++=.....||.+++.....+.
T Consensus       458 lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          458 FYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EEEEETTTTEEEEEEECCCC---
T ss_pred             EEEEeCCCCEEEEEECCCCcccc
Confidence            66666667788888887655543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.21  E-value=0.17  Score=48.60  Aligned_cols=203  Identities=8%  Similarity=-0.022  Sum_probs=113.0

Q ss_pred             CcEEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           35 GRISSMDFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        35 ~~I~~i~~s~dg~~-l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      ..+.+|+|++++.. ..+-..++.|..++++.......+.........+++...+..++++..  ..+.|.+.++.....
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~--~~~~I~v~~~dG~~~  114 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADT--GTNRIEVSKLDGQHR  114 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET--TTTEEEEEETTSTTC
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEEC--CCCEEEEEecCCCcE
Confidence            45679999986555 456667788888888754333333322234567888877777877643  256788888865443


Q ss_pred             EEEeecccccEEEEEecCC-CCeEEEe-eCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECcc
Q 020021          114 LRYFKGHHDRVVSLSLCSS-KDCFISG-SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  191 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~-~~~l~s~-s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~  191 (332)
                      ...+......-.++++.|. |..++|- +..+.|...++.......                                  
T Consensus       115 ~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~----------------------------------  160 (628)
T 4a0p_A          115 QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT----------------------------------  160 (628)
T ss_dssp             EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE----------------------------------
T ss_pred             EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE----------------------------------
Confidence            2223344455678888874 4333432 112334333332211000                                  


Q ss_pred             CCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021          192 YEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       192 ~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs  270 (332)
                             +.   ......+.+++++++. ++.+-...+.|..+|+..... ..+..   .......+++.. ++.+.|-.
T Consensus       161 -------l~---~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~---~l~~P~glav~~-~~ly~tD~  225 (628)
T 4a0p_A          161 -------LV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD---DLPHPFGLTQYQ-DYIYWTDW  225 (628)
T ss_dssp             -------EE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE---CCSCEEEEEEET-TEEEEEET
T ss_pred             -------EE---CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec---cCCCceEEEEEC-CEEEEecC
Confidence                   00   0112346788888654 445556667888888764333 22221   112234566654 45555555


Q ss_pred             CCCcEEEEECCCCceEEE
Q 020021          271 GDGSVYAWSVRSGKEVAS  288 (332)
Q Consensus       271 ~Dg~i~vWd~~~~~~~~~  288 (332)
                      ..+.|...|..+++....
T Consensus       226 ~~~~I~~~dk~tg~~~~~  243 (628)
T 4a0p_A          226 SRRSIERANKTSGQNRTI  243 (628)
T ss_dssp             TTTEEEEEETTTCCSCEE
T ss_pred             CCCEEEEEECCCCCceEE
Confidence            677888888766654333

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.12  E-value=0.14  Score=46.05  Aligned_cols=209  Identities=9%  Similarity=0.023  Sum_probs=120.6

Q ss_pred             cCCCcEEEEEECCCCCE-EEEEeCCCcEEEEEcCCCe----eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           32 DYNGRISSMDFHKSSSY-LVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~-l~tgs~D~tv~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      ..-..+.+|+|++.+.. ..+-...+.|..+++....    ....+.........+++...+..++++..  ..+.|.+.
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~--~~~~I~~~  186 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVA  186 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEE
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEEC--CCCeEEEE
Confidence            34456789999986554 4555567888888886521    22222223334567888877777777643  25688898


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCC-eEEEeeC-CCcEEEEeCCCceEEEEEEe--cCceeEEEcCC-CeEEEEEe-
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSL-DRTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQ-GLVFAVAF-  180 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~-Dg~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~-  180 (332)
                      ++........+........++++.|.+. +++|-.. .+.|...++........+..  .......+++. +.++.+-. 
T Consensus       187 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~  266 (400)
T 3p5b_L          187 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  266 (400)
T ss_dssp             CTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             eCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC
Confidence            9876554444444455678999998555 4444422 36788888764432222221  12234566644 34433332 


Q ss_pred             CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (332)
                      .+.|..+|+.-..  ...+............+++ ..+.++.+....+.|..+|..+|+.+..+.
T Consensus       267 ~~~I~~~d~dG~~--~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          267 LHSISSIDVNGGN--RKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             TTEEEEEETTSCC--CEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             CCEEEEEeCCCCc--cEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            4788888875321  1222222122233456666 345666677777889999977777665553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.96  E-value=0.28  Score=46.87  Aligned_cols=224  Identities=13%  Similarity=0.092  Sum_probs=120.3

Q ss_pred             CCcEEEEEcCCCeeeEE-eeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce-EEEeecccccEEEEEecCC
Q 020021           55 DESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFKGHHDRVVSLSLCSS  132 (332)
Q Consensus        55 D~tv~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~-~~~~~~h~~~V~~v~~~~~  132 (332)
                      ...|+.-|+.......+ +.........+++.+....++++...  .+.|..++++.... ...+..-.....++++.+.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~--~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~   94 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   94 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETT--TTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECC--CCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence            45567767664321111 11222235677888888888887532  46788888866432 2233333356788999885


Q ss_pred             -CCeEEEeeCCCcEEEEeCCCceEEEEEE--ecCceeEEEcCC-CeEEEEEeC--CEEEEEECccCCCCCeeEEEecCCC
Q 020021          133 -KDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQ-GLVFAVAFG--GYIRMFDARKYEKGPFDIFSVGGDI  206 (332)
Q Consensus       133 -~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~--~~i~vwd~~~~~~~~~~~~~~~~~~  206 (332)
                       ++..++-...+.|.+-++........+.  +......++++. +.++.+..+  +.|...++.-..  ...+.  ....
T Consensus        95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~--~~~l~--~~~~  170 (619)
T 3s94_A           95 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS--RFIII--NSEI  170 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEEEE--CSSC
T ss_pred             CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc--eEEEE--eCCC
Confidence             4455666677899999986554332221  112224556553 545444432  456555543211  11111  1122


Q ss_pred             CCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          207 SDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       207 ~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                      ...+.+++++++ +++.+-...+.|..+|+...........   .......+++..+ +.+.+-...+.|...|..+++.
T Consensus       171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~---~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG---SLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC---CCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            345789999865 5555556678899999865433222111   1122346777666 5555556678899999887765


Q ss_pred             EEE
Q 020021          286 VAS  288 (332)
Q Consensus       286 ~~~  288 (332)
                      +..
T Consensus       247 ~~~  249 (619)
T 3s94_A          247 LRE  249 (619)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.91  E-value=0.0065  Score=59.20  Aligned_cols=205  Identities=9%  Similarity=0.052  Sum_probs=111.6

Q ss_pred             cEEEEEECCCCCEE-EEEeCCCcEEEEEcCC----CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021           36 RISSMDFHKSSSYL-VTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (332)
Q Consensus        36 ~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~  110 (332)
                      .+.+|+|++++..| ++-...+.|+.+++..    ......+.........+++...+..++++..  ..+.|.+.++..
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~--~~~~I~v~d~dg  484 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADTKG  484 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCT--TTSCEEEEBSSS
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEec--cCCeEEEEecCC
Confidence            45578898866555 4445567899998875    2222222111122445677766666666532  256788998876


Q ss_pred             CceEEEeecccccEEEEEecCCCC-eEEEeeCC-CcEEEEeCCCceEEEEEE--ecCceeEEEcCC-CeEEEEE-eCCEE
Q 020021          111 NKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLD-RTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQ-GLVFAVA-FGGYI  184 (332)
Q Consensus       111 ~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~D-g~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~-~~~~i  184 (332)
                      ......+.........+++.|.+. ++++-... +.|...++........+.  +......++++. +.++.+- ..+.|
T Consensus       485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I  564 (699)
T 1n7d_A          485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  564 (699)
T ss_dssp             CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence            543333333334557888888544 44444333 677777764332211111  112234566654 3443333 35789


Q ss_pred             EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (332)
                      ..+++....  ...+............+++..+ .++++....+.|..+|..+|+.+..+.
T Consensus       565 ~~~d~dG~~--~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          565 SSIDVNGGN--RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EEECSSSSC--CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEEccCCCc--eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            998875321  1111111111122344566543 555666677899999988888776553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.91  E-value=0.19  Score=43.84  Aligned_cols=233  Identities=9%  Similarity=0.061  Sum_probs=112.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee---cccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS---KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~  110 (332)
                      ...+.+|.|++ +..++ ++.++.|.. ..+.|+.=..+..   ....+..+.+.+++..++.+.    ++.+.. ....
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~g~v~~-S~Dg  150 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN----VGAIYR-TKDS  150 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET----TCCEEE-ESST
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC----CccEEE-EcCC
Confidence            44688999986 44444 456664433 3333332222211   112344455555554444332    222211 1222


Q ss_pred             Cc-eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe---cCceeEEEcCCCeEEEEEeCCEEEE
Q 020021          111 NK-YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---QGRPAAAYDDQGLVFAVAFGGYIRM  186 (332)
Q Consensus       111 ~~-~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v  186 (332)
                      ++ -.....++...+..+.+.+++..++.+...+..+-+|-...... .+..   .......+.+++.++.++.++.+..
T Consensus       151 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~-~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~  229 (327)
T 2xbg_A          151 GKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE-PHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAF  229 (327)
T ss_dssp             TSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE-EEECCSSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred             CCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee-ECCCCCCCccceeEECCCCCEEEEeCCceEEE
Confidence            32 22223355667889999998877766654444444542111111 1111   1122344556677777777777766


Q ss_pred             EECccCCCCCeeEEEec--CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC
Q 020021          187 FDARKYEKGPFDIFSVG--GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (332)
Q Consensus       187 wd~~~~~~~~~~~~~~~--~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~  264 (332)
                      .+.....  ........  .....+..+.+.+++++++++. +|.+.. ....|+.-...............+.|.++++
T Consensus       230 s~~D~G~--tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~  305 (327)
T 2xbg_A          230 SDPDNSE--NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLC-SQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ  305 (327)
T ss_dssp             EETTEEE--EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEE-ESSTTSSCEECGGGTTSSSCCCEEEEEETTE
T ss_pred             ecCCCCC--eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEE-eCCCCcccEEcCccCCCCCCeEEEEEECCCc
Confidence            5311000  00000000  0112467788888888777665 666643 3344443322221111123456788876655


Q ss_pred             EEEEEcCCCcEEEEEC
Q 020021          265 FVISGSGDGSVYAWSV  280 (332)
Q Consensus       265 ~l~sgs~Dg~i~vWd~  280 (332)
                       ++.++.+|.|.-++-
T Consensus       306 -~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          306 -GFILGQKGILLRYVT  320 (327)
T ss_dssp             -EEEECSTTEEEEECC
T ss_pred             -eEEEcCCceEEEEcC
Confidence             555667898776653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.89  E-value=0.19  Score=43.71  Aligned_cols=197  Identities=8%  Similarity=-0.031  Sum_probs=109.2

Q ss_pred             CceeEEEEccCCc-eEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEE-EEEEe--cCceeEEEcC-CC
Q 020021          100 DESLRLLSLHDNK-YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQ-GLLRV--QGRPAAAYDD-QG  173 (332)
Q Consensus       100 d~~v~v~d~~~~~-~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~-~~~~~--~~~~~~~~~~-~~  173 (332)
                      .+.|+..++.... ....+........+++|.+. +..+++-...+.|..+++...... ..+..  ......+++. .+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            3578888887753 12222223345678999984 556667677789999998765321 11211  1222455554 44


Q ss_pred             eEEEEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc--CCCeEEEEEccCCeEeEEeeecCCC
Q 020021          174 LVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVS  250 (332)
Q Consensus       174 ~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~  250 (332)
                      .++.+. ..+.|.+++.....   .... ........+.+++.|.+..+..+.  ..+.|..+++.. .....+..  ..
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~---~~~l-~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~--~~  164 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSL---RKVL-FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIIN--SE  164 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCS---CEEE-ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEEC--SS
T ss_pred             eEEEEECCCCEEEEEECCCCc---EEEE-EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEE--CC
Confidence            444333 35788888875321   1111 112233557899998655444443  367899998763 32222211  11


Q ss_pred             CCcceEEEECCCCCEEEEE-cCCCcEEEEECCCCceEEEecC-CCCCCceEEeCCC
Q 020021          251 RNSTLEASFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPG  304 (332)
Q Consensus       251 ~~~~~~v~~spdg~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~-~~~~v~~l~~sp~  304 (332)
                      -.....++++|++..|+-+ +..+.|..+|+.. .....+.. .-..+..+++..+
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~~  219 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFED  219 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEETT
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeCC
Confidence            2344679999976655555 5667899999853 32333221 2233455665443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.87  E-value=0.2  Score=43.65  Aligned_cols=263  Identities=11%  Similarity=0.081  Sum_probs=130.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee----ecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN----SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      -...+.+|.|.+++..++ ++.++.| +...+.|+.=+...    .....+..+.+.+  ..++.+..   .+.+.. ..
T Consensus        34 ~~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~---~g~i~~-S~  105 (327)
T 2xbg_A           34 TTATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGE---PPIMLH-TT  105 (327)
T ss_dssp             CSSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEEE---TTEEEE-ES
T ss_pred             CCCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEEEC---CCeEEE-EC
Confidence            345799999987777777 5667754 33344343211111    1123456677764  33333321   232322 22


Q ss_pred             cCCceEEEee---cccccEEEEEecCCCCeEEEeeCCCcE-EEEeCCCceEEEEEEec---CceeEEEcCCCeEEEEEeC
Q 020021          109 HDNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTV-LLWDQRAEKCQGLLRVQ---GRPAAAYDDQGLVFAVAFG  181 (332)
Q Consensus       109 ~~~~~~~~~~---~h~~~V~~v~~~~~~~~l~s~s~Dg~i-~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  181 (332)
                      ..++.-..+.   .+...+..+.+.++++.++.+ .++.| +-+|  .++.-......   ......+.+++.+++++..
T Consensus       106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~  182 (327)
T 2xbg_A          106 DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR  182 (327)
T ss_dssp             STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETT
T ss_pred             CCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECC
Confidence            2233211111   233456777777666655554 45554 3333  12111111111   1223445566667766655


Q ss_pred             CEE-EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecC-CCCCcceEEEE
Q 020021          182 GYI-RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASF  259 (332)
Q Consensus       182 ~~i-~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~v~~  259 (332)
                      +.+ +..|-.   ........ ......+..+.+++++++++.+ .+|.++..+...|+.-....... .....+..+++
T Consensus       183 G~~~~S~d~g---G~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~  257 (327)
T 2xbg_A          183 GSFYSTWEPG---QTAWEPHN-RTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY  257 (327)
T ss_dssp             SSEEEEECTT---CSSCEEEE-CCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred             CcEEEEeCCC---CCceeECC-CCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence            543 333320   01111111 1223456788899999876554 57777776423243322222110 11234667889


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceEEEec---CCCCCCceEEeCCCeeEEEeccc
Q 020021          260 SPEGMFVISGSGDGSVYAWSVRSGKEVASWM---SFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       260 spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      .|++..++.+. +|.|+ +....++.=..+.   .....+..+.|.++++.++.+..
T Consensus       258 ~~~~~~~~~g~-~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~  312 (327)
T 2xbg_A          258 RTPNEVWLAGG-AGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQK  312 (327)
T ss_dssp             SSSSCEEEEES-TTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECST
T ss_pred             cCCCEEEEEeC-CCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCC
Confidence            99888877664 67773 4444444322222   23456788999776666655543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.80  E-value=0.39  Score=45.94  Aligned_cols=267  Identities=10%  Similarity=0.050  Sum_probs=139.5

Q ss_pred             CcEEEEEECCCCCEEEEEeCC--CcEEEEEcCCCeeeEEee-ecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021           35 GRISSMDFHKSSSYLVTASDD--ESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D--~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~  111 (332)
                      .....|+++|.+.+|.-+.+.  ..|...+.+ |.....+. ..-.....+++.+....++++-.  ..+.|...|+...
T Consensus       127 ~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~--~~~~I~~~~~dG~  203 (619)
T 3s94_A          127 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGT  203 (619)
T ss_dssp             SCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEET--TTCCEEEESSSCC
T ss_pred             CCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeC--CCCeEEEecCCCC
Confidence            345678898875555444433  344444544 33333332 22334677899988888888753  3567888888654


Q ss_pred             ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe------------c-----C-ce--------
Q 020021          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV------------Q-----G-RP--------  165 (332)
Q Consensus       112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~------------~-----~-~~--------  165 (332)
                      .......+....-.++++..+ ...+|-...+.|..-|..+++....+..            +     . .+        
T Consensus       204 ~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~C  282 (619)
T 3s94_A          204 NRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGC  282 (619)
T ss_dssp             EEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGC
T ss_pred             ccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcc
Confidence            433222222222345565544 4455555566777777655432211100            0     0 00        


Q ss_pred             --eEEEcC-------------------------CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC-C
Q 020021          166 --AAAYDD-------------------------QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-D  217 (332)
Q Consensus       166 --~~~~~~-------------------------~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~-d  217 (332)
                        .+...+                         ...++..+..+.|+..++........ ...+. ......+++|.+ +
T Consensus       283 s~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~-~~~~~-~l~~~~~ld~d~~~  360 (619)
T 3s94_A          283 SHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDI-VLQLE-DIRHAIAIDYDPVE  360 (619)
T ss_dssp             SSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCE-ECCCS-CCSSEEEEEEETTT
T ss_pred             cceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCcccee-EEecc-ccCccEEEEEEcCC
Confidence              000000                         11234444455666666653321111 11111 123456788987 4


Q ss_pred             CCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC-CCEEEEEcCCCcEEEEECCCCceEEEec-CCCCC
Q 020021          218 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSGKEVASWM-SFDTE  295 (332)
Q Consensus       218 g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd~~~~~~~~~~~-~~~~~  295 (332)
                      ++++.+-...+.|+.+++..........   ........+|+.+. ++.+.+-+..+.|.+.++.. +....+. ..-..
T Consensus       361 ~~ly~sD~~~~~I~r~~~~g~~~~~v~~---~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G-~~~~~l~~~~l~~  436 (619)
T 3s94_A          361 GYIYWTDDEVRAIRRSFIDGSGSQFVVT---AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG-TMRKILISEDLEE  436 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECTTCCS
T ss_pred             CeEEEEeCCCCeEEEEEcCCCccEEEEE---CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC-CeEEEEEECCCCC
Confidence            5666666678899999876533222221   11234457888864 45555556778999999864 3333332 22235


Q ss_pred             CceEEeCCC-eeEEEec
Q 020021          296 PPVIKWTPG-SLMFVTG  311 (332)
Q Consensus       296 v~~l~~sp~-~~~l~t~  311 (332)
                      +..|++.|. |.+++|.
T Consensus       437 P~~iavdp~~G~ly~tD  453 (619)
T 3s94_A          437 PRAIVLDPMVGYMYWTD  453 (619)
T ss_dssp             EEEEEEETTTTEEEEEE
T ss_pred             eeeEEEEcCCCcEEEec
Confidence            688999985 7777775

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.76  E-value=0.27  Score=43.52  Aligned_cols=205  Identities=11%  Similarity=0.245  Sum_probs=103.6

Q ss_pred             EEEEECCCCCEEEEEe------------CCCcEEEEEcCC--CeeeEEee--e-----cccceeEEEEcc--CCC-EEEE
Q 020021           38 SSMDFHKSSSYLVTAS------------DDESIRLYDVTA--ATCLKTIN--S-----KKYGVDLVCFTS--HPT-TVIY   93 (332)
Q Consensus        38 ~~i~~s~dg~~l~tgs------------~D~tv~iwd~~~--~~~~~~~~--~-----~~~~v~~~~~~~--~~~-~~~~   93 (332)
                      -.|.+.|+|..+++++            .+|.|.++|..+  ++. ..+.  +     .......+.+.+  ++. .++.
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            4566788775554442            789999999873  222 2222  1     123455666655  343 4555


Q ss_pred             ecCCCCCceeEEEEccCCc-e---EEEeecc-cccEEEEEecCCCCeEEEeeC---CCcEEEEeCCCceEEEEEEecCce
Q 020021           94 SSKNGWDESLRLLSLHDNK-Y---LRYFKGH-HDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAEKCQGLLRVQGRP  165 (332)
Q Consensus        94 ~s~~g~d~~v~v~d~~~~~-~---~~~~~~h-~~~V~~v~~~~~~~~l~s~s~---Dg~i~iWd~~~~~~~~~~~~~~~~  165 (332)
                      ......+.++.+|++..+. .   +..+.+. -...+.+.+.++|.+.++...   |...+.|+.-.+.           
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~-----------  200 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL-----------  200 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC-----------
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC-----------
Confidence            5433235678888776532 2   2233332 235678888888876666431   1100111100000           


Q ss_pred             eEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEE-EEcCCCeEEEEEccC-CeEe--
Q 020021          166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML-LTTMEGHIHVLDSFR-GTLL--  241 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~-~~~~dg~i~i~d~~~-~~~~--  241 (332)
                           +.         +.|..+|..     .....  .......+.++|||||+.+. +-+..++|+.||+.. +++.  
T Consensus       201 -----~~---------g~vyr~d~~-----~~~~~--~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~  259 (355)
T 3sre_A          201 -----AW---------SFVTYYSPN-----DVRVV--AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL  259 (355)
T ss_dssp             -----CC---------EEEEEECTT-----CCEEE--EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred             -----Cc---------cEEEEEECC-----eEEEe--ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC
Confidence                 00         011111110     00000  00112357899999997554 556788999999863 3332  


Q ss_pred             EEeeecCCCCCcceEEEECC-CCCEEEEEcCCC-cEEEEE
Q 020021          242 STYNVKPVSRNSTLEASFSP-EGMFVISGSGDG-SVYAWS  279 (332)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~sp-dg~~l~sgs~Dg-~i~vWd  279 (332)
                      ..+.   . ....-.+++.+ +|++.+++..++ .|..|+
T Consensus       260 ~~~~---~-~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          260 RVLS---F-DTLVDNISVDPVTGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             EEEE---C-SSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred             EEEe---C-CCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence            2221   1 23344678888 599888775443 333333

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.74  E-value=0.31  Score=43.98  Aligned_cols=138  Identities=13%  Similarity=0.195  Sum_probs=84.8

Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecC--CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe------------EeE
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGG--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT------------LLS  242 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~--~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~------------~~~  242 (332)
                      ..+.++.||.-++...  ..+.......  ...++..+..||+|+++|..+.. .|.|..+..+.            ...
T Consensus        36 ~~a~~n~iR~~~i~~~--~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~  112 (452)
T 3pbp_A           36 VFIQDNIIRWYNVLTD--SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIF  112 (452)
T ss_dssp             EEEETTEEEEEETTTC--SSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEE
T ss_pred             EEEECCEEEEEECCCC--CcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccccccccccee
Confidence            3445667777666532  2344444432  22367789999999999988554 88888876321            112


Q ss_pred             EeeecCC---CCCcceEEEECCC---CCEEEEEcCCCcEEEEECCCCce-EEEec---------CCCCCCceEEeCCCee
Q 020021          243 TYNVKPV---SRNSTLEASFSPE---GMFVISGSGDGSVYAWSVRSGKE-VASWM---------SFDTEPPVIKWTPGSL  306 (332)
Q Consensus       243 ~~~~~~~---~~~~~~~v~~spd---g~~l~sgs~Dg~i~vWd~~~~~~-~~~~~---------~~~~~v~~l~~sp~~~  306 (332)
                      .+...+.   ...++..+.|+|-   +..|++-.+|++||+||+..... ...+.         .....+.+++|++++.
T Consensus       113 ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~l  192 (452)
T 3pbp_A          113 HYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGL  192 (452)
T ss_dssp             EEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred             EEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCc
Confidence            3333221   2456888999994   46888899999999999975221 11221         1224567889999874


Q ss_pred             --EEEec--cceEEE
Q 020021          307 --MFVTG--SSELSF  317 (332)
Q Consensus       307 --~l~t~--~~d~~~  317 (332)
                        ++.+.  ++|+..
T Consensus       193 TLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          193 TLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CEEEEECTTSCEEEE
T ss_pred             EEEEEecCCCCCEEE
Confidence              34343  345443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.66  E-value=0.41  Score=44.31  Aligned_cols=236  Identities=11%  Similarity=0.103  Sum_probs=131.0

Q ss_pred             eEEEEcc-CCCEEEEecCCCCCceeEEEEccCCceEEEeec---ccccEEEEEe-------cCCCCeEEEeeCCC-----
Q 020021           80 DLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG---HHDRVVSLSL-------CSSKDCFISGSLDR-----  143 (332)
Q Consensus        80 ~~~~~~~-~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~---h~~~V~~v~~-------~~~~~~l~s~s~Dg-----  143 (332)
                      ..++|.| +...++.+...  .+.|++.|++.+.....+..   .......++|       .+++++|+.+.+.+     
T Consensus       142 ~~la~dp~~~~~Lyv~~~~--~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICYDG--HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEETTEEEEEEEEEET--EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CEEEEccCCCCEEEEEECC--CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4677887 35555555421  35688889888765544332   2345899999       99998666555443     


Q ss_pred             --cEEEEeCCC-ceEE-----EEE-EecCceeEEEcC-CCeEEEEE-eCCEEEEEECc-------cCCC-C---C-----
Q 020021          144 --TVLLWDQRA-EKCQ-----GLL-RVQGRPAAAYDD-QGLVFAVA-FGGYIRMFDAR-------KYEK-G---P-----  196 (332)
Q Consensus       144 --~i~iWd~~~-~~~~-----~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~i~vwd~~-------~~~~-~---~-----  196 (332)
                        .|.+.+... +...     ..+ ..........++ ++.++.+. ..+.|..+|+.       .... .   +     
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence              255655333 1211     111 222223455666 45555555 45789999986       2211 0   0     


Q ss_pred             e-eEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEcc--CCeEe--EEeeecCCC------------CCcce-EE
Q 020021          197 F-DIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSF--RGTLL--STYNVKPVS------------RNSTL-EA  257 (332)
Q Consensus       197 ~-~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~--~~~~~--~~~~~~~~~------------~~~~~-~v  257 (332)
                      + .++... .......++|+|+|+ ++++-+....|+.+|..  .+...  ..+......            -+... .+
T Consensus       300 ~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          300 FKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             EEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             cceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence            1 223332 223357899999999 46666778899996653  33321  122211000            01122 34


Q ss_pred             EEC-------CCCCEEEEEcCCCcEEEEECCCCceEEEecCCC------------------------CCCceEEeCCC-e
Q 020021          258 SFS-------PEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD------------------------TEPPVIKWTPG-S  305 (332)
Q Consensus       258 ~~s-------pdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~------------------------~~v~~l~~sp~-~  305 (332)
                      +..       ++|.++++=....+|+.++ .++. +.++.+..                        ..+..|++.++ +
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            454       5677777767788999998 4563 55543220                        12356889986 7


Q ss_pred             eEEEeccce--EEEecc
Q 020021          306 LMFVTGSSE--LSFWIP  320 (332)
Q Consensus       306 ~~l~t~~~d--~~~w~~  320 (332)
                      .++++-...  ++.+++
T Consensus       457 ~lyVaD~~N~rIrki~~  473 (496)
T 3kya_A          457 MFYVHDQVGHTIRTISM  473 (496)
T ss_dssp             EEEEEETTTTEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEEC
Confidence            777776554  444444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.58  E-value=0.35  Score=42.56  Aligned_cols=183  Identities=10%  Similarity=0.164  Sum_probs=100.9

Q ss_pred             CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcC----CCe---EEEEE--e--CCEEEEEECccCCCCCeeEE
Q 020021          132 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD----QGL---VFAVA--F--GGYIRMFDARKYEKGPFDIF  200 (332)
Q Consensus       132 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~--~--~~~i~vwd~~~~~~~~~~~~  200 (332)
                      ...+++....++-+.++|+ +++.+..+.....+.+...+    .+.   ++.++  .  +++|++|++.... .++...
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~-~~l~~i  116 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-GTLQSM  116 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-CCEEEC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-Cceeec
Confidence            3345666666778999998 66665555332222222211    111   22233  2  4789999773211 122222


Q ss_pred             E-----ecCCCCCceeEEE--cCC-CC-EEEEEcCCCeEEEEEc-------cCCeEeEEeeecCCCCCcceEEEECCCCC
Q 020021          201 S-----VGGDISDANVVKF--SND-GR-LMLLTTMEGHIHVLDS-------FRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (332)
Q Consensus       201 ~-----~~~~~~~v~~v~~--s~d-g~-~l~~~~~dg~i~i~d~-------~~~~~~~~~~~~~~~~~~~~~v~~spdg~  264 (332)
                      .     +......+..+|+  +|. ++ ++.+...+|.+..|++       .++++++++...+    .+-.+...+...
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs----q~EgcvvDd~~g  192 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS----QTEGMAADDEYG  192 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS----CEEEEEEETTTT
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC----CcceEEEcCCCC
Confidence            1     0011134566777  774 54 6777888899999888       3445667766532    344577888889


Q ss_pred             EEEEEcCCCcEEEEECC-----CCceEEEec--CCCCCCceEEe--CCCee--EEEeccc--eEEEecc
Q 020021          265 FVISGSGDGSVYAWSVR-----SGKEVASWM--SFDTEPPVIKW--TPGSL--MFVTGSS--ELSFWIP  320 (332)
Q Consensus       265 ~l~sgs~Dg~i~vWd~~-----~~~~~~~~~--~~~~~v~~l~~--sp~~~--~l~t~~~--d~~~w~~  320 (332)
                      +|+.+-+|.-|..++..     +++.+..+.  ...+.+..|++  .++++  ++++.-.  ...+++.
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            99999888666555643     233444331  12235666777  45544  4444312  2666655

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.54  E-value=0.37  Score=42.42  Aligned_cols=225  Identities=11%  Similarity=0.100  Sum_probs=115.7

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCee--eEEee---ecccceeEEEEccC---CCEEEEecCCCCC---ceeE
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTIN---SKKYGVDLVCFTSH---PTTVIYSSKNGWD---ESLR  104 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~~~~s~~g~d---~~v~  104 (332)
                      .-..|+|.|+|+++++ ..++.|++++  +++.  +..+.   ........++++|+   +..++.+.....+   +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            3568999999986665 5569999998  4442  11111   11235677899987   5555554321101   5677


Q ss_pred             EEEccCCc-----eEE-Eee---cccccEEEEEecCCCCeEEEeeC-------------CCcEEEEeCCCc---------
Q 020021          105 LLSLHDNK-----YLR-YFK---GHHDRVVSLSLCSSKDCFISGSL-------------DRTVLLWDQRAE---------  153 (332)
Q Consensus       105 v~d~~~~~-----~~~-~~~---~h~~~V~~v~~~~~~~~l~s~s~-------------Dg~i~iWd~~~~---------  153 (332)
                      .++...+.     .+. .+.   +.......+.|.|||...++-+.             .|.|.-.|....         
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            77766431     111 122   11123368999999987777542             145555554320         


Q ss_pred             ---eEEEEEEecC--ceeEEEcC-CCeEEEEEeC-CE--------EEEEECcc-C-------------CCCCeeEEEecC
Q 020021          154 ---KCQGLLRVQG--RPAAAYDD-QGLVFAVAFG-GY--------IRMFDARK-Y-------------EKGPFDIFSVGG  204 (332)
Q Consensus       154 ---~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~-~~--------i~vwd~~~-~-------------~~~~~~~~~~~~  204 (332)
                         .....+....  .....+++ .+.++.+-.. +.        |.....-. +             ...+.  .....
T Consensus       189 ~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~--~~~~~  266 (352)
T 2ism_A          189 RRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL--YFWPQ  266 (352)
T ss_dssp             CTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS--EECTT
T ss_pred             CCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe--EecCC
Confidence               0001111111  12345666 5555554432 22        33322110 0             00011  11111


Q ss_pred             CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe----E--eEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021          205 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT----L--LSTYNVKPVSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       205 ~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~----~--~~~~~~~~~~~~~~~~v~~spdg~~l~sgs  270 (332)
                       ......++| .+|.++++.-..+.|...++....    .  ...+.   .....+..+++.|||..+++..
T Consensus       267 -~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~---~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          267 -GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL---SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             -CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE---ESSCCEEEEEECTTSCEEEEEC
T ss_pred             -CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec---ccCCCeeEEEECCCCcEEEEEe
Confidence             122355677 578888877778888888765332    1  11221   1124567899999998776653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.46  E-value=0.43  Score=42.13  Aligned_cols=233  Identities=12%  Similarity=0.097  Sum_probs=119.4

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-eeEEee---ecccceeEEEEccC---CCEEEEecCC-CCC----cee
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTIN---SKKYGVDLVCFTSH---PTTVIYSSKN-GWD----ESL  103 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~~~~s~~-g~d----~~v  103 (332)
                      ....|+|.|+|+++++ ..++.|+++| .+++ .+..+.   ........++++|+   +..++.+... ..+    +.|
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            4668999999986655 5569999887 3454 222211   12235677899987   5555554321 112    456


Q ss_pred             EEEEccCC--c---e--E-EEee-cccccEEEEEecCCCCeEEEeeC-------------CCcEEEEeCCCce-------
Q 020021          104 RLLSLHDN--K---Y--L-RYFK-GHHDRVVSLSLCSSKDCFISGSL-------------DRTVLLWDQRAEK-------  154 (332)
Q Consensus       104 ~v~d~~~~--~---~--~-~~~~-~h~~~V~~v~~~~~~~~l~s~s~-------------Dg~i~iWd~~~~~-------  154 (332)
                      ..++...+  .   .  + ..+. +.......+.|.|||+..++-+.             .|.|.-.+....-       
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            66666543  1   1  1 1121 11123467899999987777543             2344444443210       


Q ss_pred             EEEEEEec--CceeEEEcC-CCeEEEEEeC----CEEEEEECcc-C-------C--CCC--eeEEEecCCCCCceeEEE-
Q 020021          155 CQGLLRVQ--GRPAAAYDD-QGLVFAVAFG----GYIRMFDARK-Y-------E--KGP--FDIFSVGGDISDANVVKF-  214 (332)
Q Consensus       155 ~~~~~~~~--~~~~~~~~~-~~~~~~~~~~----~~i~vwd~~~-~-------~--~~~--~~~~~~~~~~~~v~~v~~-  214 (332)
                      ....+...  ......+++ .+.++.+-..    ..|.+...-. +       .  ...  ...............++| 
T Consensus       188 ~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y  267 (354)
T 3a9g_A          188 NSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFV  267 (354)
T ss_dssp             TCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEEC
T ss_pred             CCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEE
Confidence            00111111  112456666 5565554432    2344332110 0       0  000  001111011123456777 


Q ss_pred             ------cCCCCEEEEEcCCCeEEEEEccCC-eEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021          215 ------SNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       215 ------s~dg~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs  270 (332)
                            ..+|.++++.-..+.|..+++... +..............+..+++.|||..+++..
T Consensus       268 ~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          268 HGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence                  367888888888889999988642 33211111111234567899999998777664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.35  E-value=0.41  Score=40.73  Aligned_cols=94  Identities=14%  Similarity=0.094  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCC-----CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-----CcEEEEECCCCceE
Q 020021          217 DGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGKEV  286 (332)
Q Consensus       217 dg~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-----g~i~vWd~~~~~~~  286 (332)
                      ++++++.|+.+     ..+.+||..+.+-...-.. +........+.  .+++.++.|+.+     ..+.+||+.+.+..
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM-ATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC-CcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence            55666666543     4578888877654322111 11111111222  377888888765     46899999876543


Q ss_pred             EEecCCCCCCceEEeCCCeeEEEeccc
Q 020021          287 ASWMSFDTEPPVIKWTPGSLMFVTGSS  313 (332)
Q Consensus       287 ~~~~~~~~~v~~l~~sp~~~~l~t~~~  313 (332)
                      ..-.........-+..-++++++.|+.
T Consensus       236 ~~~~~p~~r~~~~~~~~~~~i~v~GG~  262 (301)
T 2vpj_A          236 TVTSMTTPRCYVGATVLRGRLYAIAGY  262 (301)
T ss_dssp             EECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             ECCCCCCcccceeEEEECCEEEEEcCc
Confidence            321111111111122236677777763

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.29  E-value=0.97  Score=44.51  Aligned_cols=180  Identities=11%  Similarity=-0.020  Sum_probs=91.9

Q ss_pred             CCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC----ceEEEeecccccEEEEEe
Q 020021           54 DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----KYLRYFKGHHDRVVSLSL  129 (332)
Q Consensus        54 ~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~----~~~~~~~~h~~~V~~v~~  129 (332)
                      ....|+..++...+....+. ....+..+++.+....++++..  ..+.|+.+++...    .....+........+|++
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~--~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv  478 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  478 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeec--cceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence            34567887877554433332 2334567788887777777653  2467777777642    222233323344556666


Q ss_pred             cCCC-CeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCC
Q 020021          130 CSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD  208 (332)
Q Consensus       130 ~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~  208 (332)
                      .+.+ ++.++-...+.|.+.++........+.                                           .....
T Consensus       479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-------------------------------------------~~l~~  515 (791)
T 3m0c_C          479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------------------------------------------ENGSK  515 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-------------------------------------------CTTCC
T ss_pred             eecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-------------------------------------------CCCCC
Confidence            6544 344444555566666554322111110                                           01122


Q ss_pred             ceeEEEcCCCC-EEEEEcCC-CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE-cCCCcEEEEECCC
Q 020021          209 ANVVKFSNDGR-LMLLTTME-GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVYAWSVRS  282 (332)
Q Consensus       209 v~~v~~s~dg~-~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg-s~Dg~i~vWd~~~  282 (332)
                      ...|++.|.+. ++.+-..+ +.|...++..... ..+..  ..-.....++++|.+..|+-+ .....|...++..
T Consensus       516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~--~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEe--CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            45677777643 33333232 6777777653322 22211  112345568888766555555 4455788888743

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.11  E-value=0.77  Score=41.63  Aligned_cols=231  Identities=15%  Similarity=0.222  Sum_probs=135.6

Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC-CceEEEeecc
Q 020021           42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYLRYFKGH  120 (332)
Q Consensus        42 ~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~-~~~~~~~~~h  120 (332)
                      .+|..+.||-=. -+++.|+|+++...++.+..... |.--.|-... .+..-.    +..|.-|++.. ..+.+.+..|
T Consensus        73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~~-~l~lVT----~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLN-TVALVT----DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEETT-EEEEEC----SSEEEEEESSSSCCCEEEEECC
T ss_pred             eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCCC-eEEEEc----CCeeEEecccCCCCchhheecc
Confidence            577777776655 68999999999988887765443 3333444333 333322    46799999975 4577777766


Q ss_pred             cc----cEEEEEecCCCCeEEEee-------CCCcEEEEeCCCceEEEEEEecCceeEEEc-----CCCeEEEEEe----
Q 020021          121 HD----RVVSLSLCSSKDCFISGS-------LDRTVLLWDQRAEKCQGLLRVQGRPAAAYD-----DQGLVFAVAF----  180 (332)
Q Consensus       121 ~~----~V~~v~~~~~~~~l~s~s-------~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----  180 (332)
                      ..    .|..-..+++.++++-.|       -.|.+.++..+.+... .+..+......+.     .+..+++-+.    
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  224 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence            53    577777788888665332       3467888887654322 2211111111111     1123444443    


Q ss_pred             CCEEEEEECccC--CCCCeeEEEe--cCCC---C-CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC
Q 020021          181 GGYIRMFDARKY--EKGPFDIFSV--GGDI---S-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  252 (332)
Q Consensus       181 ~~~i~vwd~~~~--~~~~~~~~~~--~~~~---~-~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  252 (332)
                      ++++++.++...  ..+++.....  .-.+   . =-.++.+|+.-..+..-+.-|.|+++|+.++.++...+.   ...
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI---s~~  301 (494)
T 1bpo_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGE  301 (494)
T ss_dssp             CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSS
T ss_pred             CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc---cCC
Confidence            378999998643  1223321111  1110   1 124577888888888899999999999999999876652   334


Q ss_pred             cceEEEECCCCCEEEEEcCCCcEEEEECCCC
Q 020021          253 STLEASFSPEGMFVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~  283 (332)
                      ++...+...+..-++.....|.|.--.+...
T Consensus       302 ~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          302 TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            4444444444444444445555555444443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.08  E-value=0.15  Score=45.05  Aligned_cols=102  Identities=17%  Similarity=0.217  Sum_probs=61.0

Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeE--EeeecCCCCCcceEEEECCC---CCEEEEE-cCC-----CcEE
Q 020021          208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS--TYNVKPVSRNSTLEASFSPE---GMFVISG-SGD-----GSVY  276 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~v~~spd---g~~l~sg-s~D-----g~i~  276 (332)
                      ....++|.|||+++++ ...|.|++++  .++...  ..............++|+||   +.+|+.+ +..     ..|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            3467999999996665 4569999998  454321  11111111234568999998   4444444 332     6788


Q ss_pred             EEECCCCc-----eE-EEecC---CCCCCceEEeCCCeeEEEecc
Q 020021          277 AWSVRSGK-----EV-ASWMS---FDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       277 vWd~~~~~-----~~-~~~~~---~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      .++...++     .+ ..+..   .......|+|.|||.+.++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            88876432     11 11321   111346899999998888753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.05  E-value=0.7  Score=40.66  Aligned_cols=231  Identities=11%  Similarity=0.108  Sum_probs=116.3

Q ss_pred             cEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEee-------ecccceeEEEEccC---CCEEEEecCC-CC----
Q 020021           36 RISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTIN-------SKKYGVDLVCFTSH---PTTVIYSSKN-GW----   99 (332)
Q Consensus        36 ~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~---~~~~~~~s~~-g~----   99 (332)
                      ....|+|.|+|+ +++ +...+.|++++.. +.....+.       ........++++|+   ...++.+... +.    
T Consensus        19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            456899999998 665 4567899999854 33211111       12234567899885   4555544211 11    


Q ss_pred             CceeEEEEccCC--c--eEE-Eeec------ccccEEEEEecCCCCeEEEeeC-------------CCcEEEEeCCCce-
Q 020021          100 DESLRLLSLHDN--K--YLR-YFKG------HHDRVVSLSLCSSKDCFISGSL-------------DRTVLLWDQRAEK-  154 (332)
Q Consensus       100 d~~v~v~d~~~~--~--~~~-~~~~------h~~~V~~v~~~~~~~~l~s~s~-------------Dg~i~iWd~~~~~-  154 (332)
                      ...|..+++..+  .  ... .+.+      ....-..+.|.|||.+.++-+.             .|.|.-.|....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            124555555432  1  111 1111      1122357999999976666543             2455555543210 


Q ss_pred             -----------EEEEEEecC--ceeEEEcC-CCeEEEEEeC----CEEEEEECc-cC-------C---------------
Q 020021          155 -----------CQGLLRVQG--RPAAAYDD-QGLVFAVAFG----GYIRMFDAR-KY-------E---------------  193 (332)
Q Consensus       155 -----------~~~~~~~~~--~~~~~~~~-~~~~~~~~~~----~~i~vwd~~-~~-------~---------------  193 (332)
                                 ....+....  .....+++ .+.++.+-.+    .+|.+...- ++       .               
T Consensus       177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~  256 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI  256 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred             CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence                       011111111  12345666 5666655443    133221100 00       0               


Q ss_pred             CCCe--eEEEecCCCCCceeEEEc-------CCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC
Q 020021          194 KGPF--DIFSVGGDISDANVVKFS-------NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (332)
Q Consensus       194 ~~~~--~~~~~~~~~~~v~~v~~s-------~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~  264 (332)
                      ...+  ..+....+ .....++|.       .+|.++++.-..+.|..+++..++..............+..+++.|||.
T Consensus       257 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~  335 (353)
T 2g8s_A          257 VAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY  335 (353)
T ss_dssp             CTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred             CCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence            0000  00111111 234456664       3578888888888999998876654433222111123567899999998


Q ss_pred             EEEEE
Q 020021          265 FVISG  269 (332)
Q Consensus       265 ~l~sg  269 (332)
                      .+++.
T Consensus       336 lyv~t  340 (353)
T 2g8s_A          336 LYVLT  340 (353)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.75  E-value=0.23  Score=43.87  Aligned_cols=103  Identities=16%  Similarity=0.275  Sum_probs=60.3

Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEEccCCe-EeEEeeecCCCCCcceEEEECCC----CCEEEEEcC---C----CcE
Q 020021          208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPE----GMFVISGSG---D----GSV  275 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~spd----g~~l~sgs~---D----g~i  275 (332)
                      ....++|.|||+++++ ..+|.|+++| ..++ .+..+............++|+|+    +..+++-+.   +    ..|
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            4567899999996665 4559999997 4454 22111111111234568999998    444444332   3    567


Q ss_pred             EEEECCCC-------ceE-EEecC-CCCCCceEEeCCCeeEEEecc
Q 020021          276 YAWSVRSG-------KEV-ASWMS-FDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       276 ~vWd~~~~-------~~~-~~~~~-~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      ..|+....       +.+ ..+.. .......|+|.|||.+.++.+
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            78877543       111 11221 111246799999999888743

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.66  E-value=1.2  Score=40.64  Aligned_cols=32  Identities=6%  Similarity=0.134  Sum_probs=22.8

Q ss_pred             ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCc
Q 020021          122 DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE  153 (332)
Q Consensus       122 ~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~  153 (332)
                      ..-++++|.|+|+.+++--..+.|++++..++
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence            45678999999998877544456777765444

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.64  E-value=0.89  Score=38.67  Aligned_cols=80  Identities=13%  Similarity=0.089  Sum_probs=39.7

Q ss_pred             CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-----CcEEEEECCCCceEEEe-cCCCC-CCceEE
Q 020021          228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGKEVASW-MSFDT-EPPVIK  300 (332)
Q Consensus       228 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-----g~i~vWd~~~~~~~~~~-~~~~~-~v~~l~  300 (332)
                      ..+.+||..+.+-...-. .+........+.  -+++.++.|+.+     ..+.++|+.+.+....- ..... ....+.
T Consensus       169 ~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCP-MIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             CCEEEEETTTTEEEEECC-CSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred             ceEEEeCCCCCeEEECCC-ccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence            457788887765332211 111111111222  277788887754     36899999876543211 11111 112222


Q ss_pred             eCCCeeEEEecc
Q 020021          301 WTPGSLMFVTGS  312 (332)
Q Consensus       301 ~sp~~~~l~t~~  312 (332)
                      +  ++++++.|+
T Consensus       246 ~--~~~i~v~GG  255 (306)
T 3ii7_A          246 V--GSIVYVLAG  255 (306)
T ss_dssp             E--TTEEEEEEC
T ss_pred             E--CCEEEEEeC
Confidence            2  667777766

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.63  E-value=0.88  Score=38.56  Aligned_cols=66  Identities=8%  Similarity=0.107  Sum_probs=37.4

Q ss_pred             CCCEEEEEcCC-----CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC-----cEEEEECCCCce
Q 020021          217 DGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-----SVYAWSVRSGKE  285 (332)
Q Consensus       217 dg~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg-----~i~vWd~~~~~~  285 (332)
                      ++++++.|+.+     ..+.+||..+.+-...-.. +......  .+...+++.++.|+.++     .+.++|+.+.+.
T Consensus       206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~--~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM-TTPRCYV--GATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC-SSCCBSC--EEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC-CCcccce--eEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence            55666666553     4688899887654322111 1111111  12223778888887663     578888877553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.46  E-value=0.77  Score=47.80  Aligned_cols=196  Identities=14%  Similarity=0.220  Sum_probs=111.2

Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC-CceEEEeecc
Q 020021           42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYLRYFKGH  120 (332)
Q Consensus        42 ~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~-~~~~~~~~~h  120 (332)
                      .+|..+.||-=+ -+++.|+|+++...++....... |.--.|-.... +....    +..|.-|++.. ..+.+.+..|
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~-VvfWkWis~~~-l~lVT----~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNT-VALVT----DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCC-ceEEEecCCCe-eEEEc----CCeEEEeccCCCCccHHHHhcc
Confidence            467777776554 68999999998877766554332 33334443332 32222    45799999974 3455566555


Q ss_pred             ----cccEEEEEecCCCCeEEEee-------CCCcEEEEeCCCceEEEEEEecCcee--EEE---cCCCeEEEEEe----
Q 020021          121 ----HDRVVSLSLCSSKDCFISGS-------LDRTVLLWDQRAEKCQGLLRVQGRPA--AAY---DDQGLVFAVAF----  180 (332)
Q Consensus       121 ----~~~V~~v~~~~~~~~l~s~s-------~Dg~i~iWd~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~----  180 (332)
                          ...|..-..+++.++++-.|       -.|.+.++..+.+... .+..+....  ...   .++..+++-+.    
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~  224 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence                34566667778887665332       3577888876543321 111110000  000   12233444332    


Q ss_pred             CCEEEEEECccC--CCCCeeEEEec--CC----CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021          181 GGYIRMFDARKY--EKGPFDIFSVG--GD----ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       181 ~~~i~vwd~~~~--~~~~~~~~~~~--~~----~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (332)
                      ++++++.++...  ..+++......  -.    ..=..++..|+.-..+..-+.-|-|+++|+.+|..+...+
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence            378999988543  12222211100  00    0112456778877788888999999999999998875443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.21  E-value=1.3  Score=38.48  Aligned_cols=142  Identities=10%  Similarity=-0.007  Sum_probs=64.7

Q ss_pred             CcEEEEeCCCceEEEEEEecC--c--eeEEEcCCCeEEEEEe------CCEEEEEECccCCCCCeeEEE-ecCCCCCcee
Q 020021          143 RTVLLWDQRAEKCQGLLRVQG--R--PAAAYDDQGLVFAVAF------GGYIRMFDARKYEKGPFDIFS-VGGDISDANV  211 (332)
Q Consensus       143 g~i~iWd~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~------~~~i~vwd~~~~~~~~~~~~~-~~~~~~~v~~  211 (332)
                      ..+.++|+.+++....-.++.  .  ..++...+..++.++.      ...+..||+.... ....... ..........
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~-~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNN-LKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC----CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCC-CcEEecCCCCCCcccccc
Confidence            478899998877654433321  1  2223333333444332      2345666651110 0010000 0000011122


Q ss_pred             EEEcCCCCEEEEEcCC----------------------CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE
Q 020021          212 VKFSNDGRLMLLTTME----------------------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (332)
Q Consensus       212 v~~s~dg~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg  269 (332)
                      .+...++++++.|+.+                      ..+.+||+.+.+-...-. .+.....  ..+...+++.++.|
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~--~~~~~~~~~i~v~G  323 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE-LSQGRAY--GVSLPWNNSLLIIG  323 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE-CSSCCBS--SEEEEETTEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC-CCCCccc--ceeEEeCCEEEEEe
Confidence            2344577888888742                      257788987654322211 1122111  22333578888888


Q ss_pred             cCCC------cEEEEECCCCceEEE
Q 020021          270 SGDG------SVYAWSVRSGKEVAS  288 (332)
Q Consensus       270 s~Dg------~i~vWd~~~~~~~~~  288 (332)
                      +.++      .|.+.++.+++.+..
T Consensus       324 G~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          324 GETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             EECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eeCCCCCEeeeEEEEEEcCcEeEee
Confidence            8653      455668887776543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.21  E-value=1.2  Score=37.66  Aligned_cols=229  Identities=10%  Similarity=0.137  Sum_probs=107.9

Q ss_pred             CCEEEEEeCC----CcEEEEEcCCCeeeEE--eeecccceeEEEEccCCCEEEEecCCC--CCceeEEEEccCCceEEE-
Q 020021           46 SSYLVTASDD----ESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYLRY-  116 (332)
Q Consensus        46 g~~l~tgs~D----~tv~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g--~d~~v~v~d~~~~~~~~~-  116 (332)
                      +.+++.||.+    ..+..||+.+.+-...  +...... ..++. .++..++.+...+  .-+.+.++|..+.+-... 
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3455556543    4678888877643221  1111111 12222 2333344443211  124577888877653221 


Q ss_pred             -eecccccEEEEEecCCCCeEEEeeCCC-----cEEEEeCCCceEEEEEEecC---ceeEEEcCCCeEEEEEeC------
Q 020021          117 -FKGHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAFG------  181 (332)
Q Consensus       117 -~~~h~~~V~~v~~~~~~~~l~s~s~Dg-----~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------  181 (332)
                       +......-..+.  .+++.++.|+.++     .+.++|+.+++....-.++.   ...++...+..++.++.+      
T Consensus        94 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  171 (302)
T 2xn4_A           94 NMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQC  171 (302)
T ss_dssp             CCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEE
T ss_pred             CCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCcc
Confidence             111111111111  2567777787664     57788888776543322221   112222233333433331      


Q ss_pred             -CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC-----CeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021          182 -GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (332)
Q Consensus       182 -~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~  255 (332)
                       ..+.+||.....   ...... .........+...++++++.|+.+     ..+.+||..+.+-...-.. +...... 
T Consensus       172 ~~~~~~yd~~~~~---W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~-  245 (302)
T 2xn4_A          172 LSTVECYNATTNE---WTYIAE-MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM-NMCRRNA-  245 (302)
T ss_dssp             CCCEEEEETTTTE---EEEECC-CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC-SSCCBSC-
T ss_pred             ccEEEEEeCCCCc---EEECCC-CccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC-CCccccC-
Confidence             346777765421   111100 000111112223367888888764     3689999887654322111 1111111 


Q ss_pred             EEEECCCCCEEEEEcCCC-----cEEEEECCCCce
Q 020021          256 EASFSPEGMFVISGSGDG-----SVYAWSVRSGKE  285 (332)
Q Consensus       256 ~v~~spdg~~l~sgs~Dg-----~i~vWd~~~~~~  285 (332)
                      . +...+++.++.|+.++     .+.+||+.+.+.
T Consensus       246 ~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          246 G-VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             E-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             e-EEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            1 2223788888887664     489999987654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.09  E-value=0.085  Score=43.23  Aligned_cols=104  Identities=13%  Similarity=0.077  Sum_probs=63.9

Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe----eecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCC
Q 020021          208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY----NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG  283 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~  283 (332)
                      .+..++|+|+|.+.++  .+|.++-.+..+++...-+    .+.....+-...+.|.|+|.+.++  .||.|+-++-.+.
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~  117 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS  117 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence            5668999999998888  7888887776442111000    000011112357899999999988  5699998876442


Q ss_pred             ceE---E--Eec-CC-CCCCceEEeCCCeeEEEeccceE
Q 020021          284 KEV---A--SWM-SF-DTEPPVIKWTPGSLMFVTGSSEL  315 (332)
Q Consensus       284 ~~~---~--~~~-~~-~~~v~~l~~sp~~~~l~t~~~d~  315 (332)
                      ..-   .  +.. .. =..+..|.|.|+|.+.+..+..+
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~dg~l  156 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQQF  156 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETTEE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEeCCcE
Confidence            210   0  000 00 02468899999998887774443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.08  E-value=1.6  Score=38.31  Aligned_cols=38  Identities=13%  Similarity=0.110  Sum_probs=28.4

Q ss_pred             eecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce
Q 020021          117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK  154 (332)
Q Consensus       117 ~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~  154 (332)
                      +......-+.++|.|+|+.+++--..|.|++++...++
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~   64 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR   64 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence            33445567899999999988887668999988765443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.01  E-value=1.6  Score=37.95  Aligned_cols=172  Identities=8%  Similarity=0.082  Sum_probs=103.6

Q ss_pred             EeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeEE-eee----c--ccceeEEEE---ccCCCEEEEecC-
Q 020021           29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKT-INS----K--KYGVDLVCF---TSHPTTVIYSSK-   96 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~~~~~s~-   96 (332)
                      .+++.+.--.+++|++.. .++++.-..++|..||...+..... +..    .  ...+..+.+   .+.+..++++.. 
T Consensus         7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A            7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            355555556688998754 4555555899999999986644333 221    1  112456778   466544443221 


Q ss_pred             C-----C----CCceeEEEEcc---CCceEEEee--ccc-----------ccEEEEEecCCCCeEEEeeCC-CcEEEEeC
Q 020021           97 N-----G----WDESLRLLSLH---DNKYLRYFK--GHH-----------DRVVSLSLCSSKDCFISGSLD-RTVLLWDQ  150 (332)
Q Consensus        97 ~-----g----~d~~v~v~d~~---~~~~~~~~~--~h~-----------~~V~~v~~~~~~~~l~s~s~D-g~i~iWd~  150 (332)
                      .     |    -+..+..+|+.   +++.+....  ...           .....++..++|+.-++++.- +.|...+.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence            0     1    14668889998   666554332  222           247788888999988887765 55444443


Q ss_pred             CCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeE
Q 020021          151 RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI  230 (332)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i  230 (332)
                      ...                             .+..|.+.....         ......+.+++.|||..|++....|.+
T Consensus       167 dG~-----------------------------~~~~~~~~~~~~---------~~~~G~nGIv~~pdg~~Liv~~~~g~L  208 (334)
T 2p9w_A          167 DGK-----------------------------TVSTFAWESGNG---------GQRPGYSGITFDPHSNKLIAFGGPRAL  208 (334)
T ss_dssp             TSC-----------------------------CEEEEEECCCCS---------SSCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred             CCC-----------------------------EEeeeeecCCCc---------ccccCcceEEEeCCCCEEEEEcCCCeE
Confidence            211                             122333221110         111245789999999988888779999


Q ss_pred             EEEEccCC
Q 020021          231 HVLDSFRG  238 (332)
Q Consensus       231 ~i~d~~~~  238 (332)
                      ..+|+.+.
T Consensus       209 ~~fD~~~p  216 (334)
T 2p9w_A          209 TAFDVSKP  216 (334)
T ss_dssp             EEEECSSS
T ss_pred             EEEcCCCC
Confidence            99998753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.52  E-value=3.4  Score=39.42  Aligned_cols=270  Identities=6%  Similarity=0.051  Sum_probs=143.4

Q ss_pred             CcEEEEEECCCCCEEEEEeC--CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021           35 GRISSMDFHKSSSYLVTASD--DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~--D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~  112 (332)
                      ....+|+++|...+|.-..+  ...|...+.+.. ....+...-.....+++.+.+..++++-.  ..+.|...|+....
T Consensus       123 ~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~  199 (628)
T 4a0p_A          123 DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS-ERTTLVPNVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLN  199 (628)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCS
T ss_pred             CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC-ceEEEECCCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCc
Confidence            44679999986555544443  345555565533 33333333345677899998888888753  35788888986644


Q ss_pred             eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec----------------C-ce----------
Q 020021          113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----------------G-RP----------  165 (332)
Q Consensus       113 ~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~----------------~-~~----------  165 (332)
                      . ..+........++++.. +..++|-...+.|...|..+++....+...                . .+          
T Consensus       200 ~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~  277 (628)
T 4a0p_A          200 R-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH  277 (628)
T ss_dssp             C-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSS
T ss_pred             e-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcch
Confidence            3 34444444556777764 445555555677777775544322222110                0 00          


Q ss_pred             eEEEcCCC-----------------------eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEE
Q 020021          166 AAAYDDQG-----------------------LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLM  221 (332)
Q Consensus       166 ~~~~~~~~-----------------------~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l  221 (332)
                      .+...+.+                       .++..+....|+-..+....... ..... .....+.+++|.+.. +++
T Consensus       278 ~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~-~~l~~-~~~~~~~~ld~d~~~~~iy  355 (628)
T 4a0p_A          278 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPD-IILPI-HSLRNVRAIDYDPLDKQLY  355 (628)
T ss_dssp             EEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCC-EECCC-TTCSCEEEEEEETTTTEEE
T ss_pred             hhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCce-EEEEe-hhcCCceEEEEecCCCeEE
Confidence            00000101                       11122223334333332111000 01111 112346678888754 444


Q ss_pred             EEEcCCCeEEEEEccCCeEeEEeeecC---CCCCcceEEEECCCCCEE-EEEcCCCcEEEEECCCCceEEEec-CCCCCC
Q 020021          222 LLTTMEGHIHVLDSFRGTLLSTYNVKP---VSRNSTLEASFSPEGMFV-ISGSGDGSVYAWSVRSGKEVASWM-SFDTEP  296 (332)
Q Consensus       222 ~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~~v~~spdg~~l-~sgs~Dg~i~vWd~~~~~~~~~~~-~~~~~v  296 (332)
                      .+-...+.|+.++.........+....   ........+|+.+.++.| .+-+..+.|.+.++. ++....+. ..-..+
T Consensus       356 ~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~P  434 (628)
T 4a0p_A          356 WIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRP  434 (628)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCE
T ss_pred             EEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCce
Confidence            444567888888865432221221100   012345678998876644 466778899999984 55544442 223457


Q ss_pred             ceEEeCC-CeeEEEecc
Q 020021          297 PVIKWTP-GSLMFVTGS  312 (332)
Q Consensus       297 ~~l~~sp-~~~~l~t~~  312 (332)
                      ..|++.| .|.++.|..
T Consensus       435 r~iavdp~~g~ly~tD~  451 (628)
T 4a0p_A          435 RAVVVNPEKGYMYFTNL  451 (628)
T ss_dssp             EEEEEETTTTEEEEEEE
T ss_pred             eeEEEecCCCeEEEeec
Confidence            8899999 788887753

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.38  E-value=2.8  Score=37.83  Aligned_cols=113  Identities=14%  Similarity=0.196  Sum_probs=73.1

Q ss_pred             eEEEcCCCeEEEEEeCCEEEEEECccCCCC--------Cee--EEEecC----CCCCceeEEEcCCC---CEEEEEcCCC
Q 020021          166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKG--------PFD--IFSVGG----DISDANVVKFSNDG---RLMLLTTMEG  228 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~--------~~~--~~~~~~----~~~~v~~v~~s~dg---~~l~~~~~dg  228 (332)
                      ....++.|.+++...+..|.+..+......        ++.  .+.++.    ...+|..+.|+|-|   ..+++=..|+
T Consensus        70 qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~  149 (452)
T 3pbp_A           70 HVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDD  149 (452)
T ss_dssp             EEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTS
T ss_pred             EEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCC
Confidence            467788899999998899999887622111        111  334332    13568889998865   6899999999


Q ss_pred             eEEEEEccCCeE-eEEeeec------CCCCCcceEEEECCCCCEEEEEc--CCCcEEEE
Q 020021          229 HIHVLDSFRGTL-LSTYNVK------PVSRNSTLEASFSPEGMFVISGS--GDGSVYAW  278 (332)
Q Consensus       229 ~i~i~d~~~~~~-~~~~~~~------~~~~~~~~~v~~spdg~~l~sgs--~Dg~i~vW  278 (332)
                      .|++||+..... ...++..      ......+.+++|++++-.|...+  ..|-|+-.
T Consensus       150 ~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          150 TITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            999999975321 0122110      11124566789999887666644  77777654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.35  E-value=0.83  Score=41.80  Aligned_cols=105  Identities=16%  Similarity=0.280  Sum_probs=60.2

Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC-----CCCcceEEEECCC----CCEEEEEcC-------
Q 020021          208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----SRNSTLEASFSPE----GMFVISGSG-------  271 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~v~~spd----g~~l~sgs~-------  271 (332)
                      ....++|.|||+++++-...+.|++++...+...........     .......++|+||    +.+.++-+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            456899999999888766556899998655543221111111     1234457999995    444444432       


Q ss_pred             -----CCcEEEEECCCC-------ceEE-EecC-CCCCCceEEeCCCeeEEEecc
Q 020021          272 -----DGSVYAWSVRSG-------KEVA-SWMS-FDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       272 -----Dg~i~vWd~~~~-------~~~~-~~~~-~~~~v~~l~~sp~~~~l~t~~  312 (332)
                           ...|.-+++...       +.+. .+.. .......|+|.|||.+.++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                 235666665332       1111 1221 112347799999998877743

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.27  E-value=2.2  Score=36.11  Aligned_cols=183  Identities=13%  Similarity=0.153  Sum_probs=90.8

Q ss_pred             CCCeEEEeeCCC-----cEEEEeCCCceEEEEEEecC---ceeEEEcCCCeEEEEEeC-----CEEEEEECccCCCCCee
Q 020021          132 SKDCFISGSLDR-----TVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAFG-----GYIRMFDARKYEKGPFD  198 (332)
Q Consensus       132 ~~~~l~s~s~Dg-----~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~i~vwd~~~~~~~~~~  198 (332)
                      +++.++.|+.++     .+.++|+.+++....-.++.   ...++...+..++.++.+     ..+.+||.....   ..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~---W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE---WF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE---EE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe---Ee
Confidence            567778887653     58888988776544322221   112222333445555544     256677765421   11


Q ss_pred             EEEecCCCCCceeEEEcCCCCEEEEEcCC-------CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC
Q 020021          199 IFSVGGDISDANVVKFSNDGRLMLLTTME-------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  271 (332)
Q Consensus       199 ~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~  271 (332)
                      ...... .......+...++++++.|+.+       ..+.+||..+.+-...-.. +........+.  .+++.++.|+.
T Consensus       138 ~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~--~~~~iyv~GG~  213 (302)
T 2xn4_A          138 HVAPMN-TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM-STRRSGAGVGV--LNNLLYAVGGH  213 (302)
T ss_dssp             EECCCS-SCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCC-SSCCBSCEEEE--ETTEEEEECCB
T ss_pred             ecCCCC-CcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC-ccccccccEEE--ECCEEEEECCC
Confidence            111000 0111111222377888887643       3588999887654322111 11111111222  37788888876


Q ss_pred             CC-----cEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEeccc-------eEEEecccc
Q 020021          272 DG-----SVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSS-------ELSFWIPDL  322 (332)
Q Consensus       272 Dg-----~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~~-------d~~~w~~~~  322 (332)
                      ++     .+.++|+.+.+..... ......-..++ ..++++++.|+.       ++..++++.
T Consensus       214 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          214 DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             SSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             CCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCC
Confidence            53     6999999876543221 11111111222 236677777663       255555543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.87  E-value=2.7  Score=35.73  Aligned_cols=102  Identities=14%  Similarity=0.090  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCC-----CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-----CcEEEEECCCCceE
Q 020021          217 DGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGKEV  286 (332)
Q Consensus       217 dg~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-----g~i~vWd~~~~~~~  286 (332)
                      ++++++.|+.+     ..+.+||..+.+-...-. .+........+.+  +++.++.|+.+     ..+.++|+.+.+..
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA-MNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC-CCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence            56666666543     457888887765332111 1111111112233  77888888765     46999999876543


Q ss_pred             EEe-cCCCCCCceEEeCCCeeEEEeccc-------eEEEecccc
Q 020021          287 ASW-MSFDTEPPVIKWTPGSLMFVTGSS-------ELSFWIPDL  322 (332)
Q Consensus       287 ~~~-~~~~~~v~~l~~sp~~~~l~t~~~-------d~~~w~~~~  322 (332)
                      ... ......-..++. -++++++.|+.       ++.++++..
T Consensus       245 ~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          245 FVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             ECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             ECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence            221 111111112222 35677777653       355555543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.80  E-value=5.1  Score=38.70  Aligned_cols=111  Identities=9%  Similarity=0.098  Sum_probs=55.7

Q ss_pred             CCCCEEEEEeCC----CcEEEEEcCCCeeeEEe-e-------ecccceeEEEEcc-CCCEEEEecCCC---CCceeEEEE
Q 020021           44 KSSSYLVTASDD----ESIRLYDVTAATCLKTI-N-------SKKYGVDLVCFTS-HPTTVIYSSKNG---WDESLRLLS  107 (332)
Q Consensus        44 ~dg~~l~tgs~D----~tv~iwd~~~~~~~~~~-~-------~~~~~v~~~~~~~-~~~~~~~~s~~g---~d~~v~v~d  107 (332)
                      .++.+++.||.+    ..+.+||..+++-...- .       .... -+.++... ++...+.+...+   .-+.+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~-~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARM-CHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCB-SCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCcccc-ceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            456788888864    46888888776433221 1       1111 12233332 444445443222   124577888


Q ss_pred             ccCCceEEEeecccccE-EEEEecCCCCeEEEeeCCC--cEEEEeCCCceE
Q 020021          108 LHDNKYLRYFKGHHDRV-VSLSLCSSKDCFISGSLDR--TVLLWDQRAEKC  155 (332)
Q Consensus       108 ~~~~~~~~~~~~h~~~V-~~v~~~~~~~~l~s~s~Dg--~i~iWd~~~~~~  155 (332)
                      ..+++-...-.-....- .++....+++.++.||.++  .+.+||+.++..
T Consensus       475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W  525 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF  525 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE
T ss_pred             CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce
Confidence            87754322110000000 1122223677888887655  577777776543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.72  E-value=2.9  Score=35.62  Aligned_cols=67  Identities=10%  Similarity=0.057  Sum_probs=37.4

Q ss_pred             CCCCEEEEEcC------CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC-----cEEEEECCCCc
Q 020021          216 NDGRLMLLTTM------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-----SVYAWSVRSGK  284 (332)
Q Consensus       216 ~dg~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg-----~i~vWd~~~~~  284 (332)
                      .++++++.|+.      -..+.+||..+.+-...-. .+........+.  -+++.++.|+.++     .+.++|+.+.+
T Consensus       147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP-MQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC-CCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            35566666654      2368888887764332111 111111111222  3778888887655     58899998765


Q ss_pred             e
Q 020021          285 E  285 (332)
Q Consensus       285 ~  285 (332)
                      .
T Consensus       224 W  224 (315)
T 4asc_A          224 W  224 (315)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.61  E-value=0.74  Score=40.51  Aligned_cols=103  Identities=11%  Similarity=0.094  Sum_probs=57.5

Q ss_pred             CceeEEEcCCCC-EEEEEcCCCeEEEEEccCCeEeEEeeec----CCCCCcceEEEECCC----CCEEEEEcC-------
Q 020021          208 DANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVK----PVSRNSTLEASFSPE----GMFVISGSG-------  271 (332)
Q Consensus       208 ~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~~~v~~spd----g~~l~sgs~-------  271 (332)
                      ....++|.|||+ ++++ ...|.|++++.. +.....+...    .........++|+||    +...++-+.       
T Consensus        19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            346789999999 6654 457999999853 4332111100    011223467999996    444444332       


Q ss_pred             CCcEEEEECCCC--c--eEEE----ecC---CCCCCceEEeCCCeeEEEecc
Q 020021          272 DGSVYAWSVRSG--K--EVAS----WMS---FDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       272 Dg~i~vWd~~~~--~--~~~~----~~~---~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      ...|..|++...  +  ....    +..   .......|+|.|||.+.++.+
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence            235666766532  1  1111    111   011246799999998877743

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.63  E-value=4.2  Score=34.46  Aligned_cols=66  Identities=14%  Similarity=0.063  Sum_probs=37.0

Q ss_pred             CCCEEEEEcCC-----CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC-----cEEEEECCCCce
Q 020021          217 DGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-----SVYAWSVRSGKE  285 (332)
Q Consensus       217 dg~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg-----~i~vWd~~~~~~  285 (332)
                      ++++++.|+.+     ..+.+||+.+.+-...-. .+........+.  -+++.++.|+.++     .+.++|+.+.+.
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-MKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC-CCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence            56666666554     468889987765432111 111111111222  3778888887543     578888877654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.33  E-value=6.6  Score=33.93  Aligned_cols=110  Identities=8%  Similarity=-0.027  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcC------CCeEEEEEc--cCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC---------------
Q 020021          216 NDGRLMLLTTM------EGHIHVLDS--FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---------------  272 (332)
Q Consensus       216 ~dg~~l~~~~~------dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D---------------  272 (332)
                      .++++++.|+.      ...+.++|+  .+.+-.. ....+.........+...+++.++.|+.+               
T Consensus       199 ~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~  277 (357)
T 2uvk_A          199 KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK-LAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYA  277 (357)
T ss_dssp             ETTEEEEECCEEETTEECCCEEEEECC---CEEEE-CCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSST
T ss_pred             ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEe-cCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceec
Confidence            36777777764      345777776  4433221 11111111111112333477888888742               


Q ss_pred             -------CcEEEEECCCCceE--EEecCCCCCCceEEeCCCeeEEEeccc--------eEEEecccccccccc
Q 020021          273 -------GSVYAWSVRSGKEV--ASWMSFDTEPPVIKWTPGSLMFVTGSS--------ELSFWIPDLSKLGAY  328 (332)
Q Consensus       273 -------g~i~vWd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~t~~~--------d~~~w~~~~~~~~~~  328 (332)
                             ..+.++|+.+.+..  ..+. .. ...+.+...++++++.|+.        |+.+.+++..++-+.
T Consensus       278 ~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          278 HEGLKKSYSTDIHLWHNGKWDKSGELS-QG-RAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             TTTCCCEECCEEEECC---CEEEEECS-SC-CBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             cccccceeeEEEEecCCCceeeCCCCC-CC-cccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence                   25789999875542  2221 11 1122233346777777763        244446666665544

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.91  E-value=1.3  Score=38.79  Aligned_cols=183  Identities=9%  Similarity=0.099  Sum_probs=91.1

Q ss_pred             CceeEEEEccCCceEEEeecc-cccEEEEEec--C-CCCeEEEe-eCCCcEEEEeCCCceEEEEEEecCc----eeEE--
Q 020021          100 DESLRLLSLHDNKYLRYFKGH-HDRVVSLSLC--S-SKDCFISG-SLDRTVLLWDQRAEKCQGLLRVQGR----PAAA--  168 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h-~~~V~~v~~~--~-~~~~l~s~-s~Dg~i~iWd~~~~~~~~~~~~~~~----~~~~--  168 (332)
                      |+.+.-.|.++|+.+..++.- ..++....-.  + ++..++-. ..||.+..+|..++...-.+..+..    +...  
T Consensus        19 dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~   98 (339)
T 2be1_A           19 EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKT   98 (339)
T ss_dssp             TSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEEC
T ss_pred             CCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCC
Confidence            778888899899888877654 1222222111  1 22333333 6899999999888754433332211    1110  


Q ss_pred             ---E------cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCC-----ceeEE---Ec--CCCCEEEEEcCCCe
Q 020021          169 ---Y------DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD-----ANVVK---FS--NDGRLMLLTTMEGH  229 (332)
Q Consensus       169 ---~------~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~-----v~~v~---~s--~dg~~l~~~~~dg~  229 (332)
                         .      ..++.+++++.++.+...|.++.+.  +-.+..+.....     ..+-.   +.  ..+..+..+..+..
T Consensus        99 ~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~  176 (339)
T 2be1_A           99 NIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI--ISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFE  176 (339)
T ss_dssp             C----------CCEEEEECEEEEEEEEEETTTCCE--EEEESTTCBCC--------------------CCEEEEEEEEEE
T ss_pred             CceeecccccccCCEEEEEecCCEEEEEECCCCcE--EEEEecCCCcccccccccccccccccccccCCCeEEEecceEE
Confidence               1      1466778888889998888876432  111111111000     00000   10  11345566666666


Q ss_pred             EEEEEccCCeEeEEeee---cCCCCC-cce-EEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 020021          230 IHVLDSFRGTLLSTYNV---KPVSRN-STL-EASFSPEGMFVISGSGDGSVYAWSVRSGKEVA  287 (332)
Q Consensus       230 i~i~d~~~~~~~~~~~~---~~~~~~-~~~-~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~  287 (332)
                      +.+.+ .+|+ +=.+..   .+.... .+. .-.++.|+.+++ ++.||.|.-.|..+|+.+.
T Consensus       177 v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          177 LGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             CEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EETTTEEEEECSTTCCEEE
T ss_pred             EEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEE-ECCCCEEEEEECCCCcEEE
Confidence            66655 3443 100000   000000 000 001124577754 6789999999988887665

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=89.76  E-value=8.2  Score=32.45  Aligned_cols=66  Identities=8%  Similarity=0.078  Sum_probs=37.4

Q ss_pred             CCCEEEEEcCC-----CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-----CcEEEEECCCCce
Q 020021          217 DGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGKE  285 (332)
Q Consensus       217 dg~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-----g~i~vWd~~~~~~  285 (332)
                      ++++++.|+.+     ..+.+||+.+.+-...-. .+........+.+  +++.++.|+.+     ..+.++|+.+.+.
T Consensus       200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP-MPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             TTEEEEECCEETTEEBCCEEEEETTTTEEEECCC-CSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC-CCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence            55666666543     357888887765332111 1111112222233  78888888854     4688999987654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.57  E-value=9.9  Score=33.12  Aligned_cols=112  Identities=7%  Similarity=0.030  Sum_probs=69.0

Q ss_pred             CEEEEEeCCCcEEEEEcCCCeeeEEeeecc-cceeEEEEc-c---CCCEEEEecCCCCCceeEEEEccCCceEEEeec--
Q 020021           47 SYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFT-S---HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG--  119 (332)
Q Consensus        47 ~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~-~~v~~~~~~-~---~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~--  119 (332)
                      .+++.++.||.|.-.|..+|+.+-++.... .+.  +... +   .+..++.... ..|+.+..++.++|.....+.-  
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~--~~~~~~~~~~~~~~~vv~p-~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPL--IEIQEPSRLETYETLIIEP-FGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCS--EECCCSCTTTSSEEEEECC-STTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCc--EEecCCccccCCcEEEEEE-CCCCEEEEEECCCCcEEeeecccc
Confidence            578889999999999999999988776541 111  1111 1   1223333310 1378888889888754433221  


Q ss_pred             --ccccEEEE---Ee-----cCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe
Q 020021          120 --HHDRVVSL---SL-----CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV  161 (332)
Q Consensus       120 --h~~~V~~v---~~-----~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~  161 (332)
                        ...++..-   .+     ...+..+++|+.+|.+..-|+++++.+..+..
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence              11122210   00     01456889999999999999999988777654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.12  E-value=4.9  Score=36.75  Aligned_cols=102  Identities=15%  Similarity=0.217  Sum_probs=56.4

Q ss_pred             ceeEEEcCCCC-EEEEEcCCCeEEEEEccCCe---EeEEee--ecC----CCCCcceEEEECCC----CCEEEEEcCCC-
Q 020021          209 ANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGT---LLSTYN--VKP----VSRNSTLEASFSPE----GMFVISGSGDG-  273 (332)
Q Consensus       209 v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~---~~~~~~--~~~----~~~~~~~~v~~spd----g~~l~sgs~Dg-  273 (332)
                      ...++|.|||+ .++++...|.|++++.....   .+..+.  ...    ....-...++|+|+    +.+.++-+.+. 
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~   95 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE   95 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence            46789999996 34455678999999753221   111111  000    01234567999996    55555444221 


Q ss_pred             -----------cEEEEECCCC----------ceEEEec----CCCCCCceEEeCCCeeEEEecc
Q 020021          274 -----------SVYAWSVRSG----------KEVASWM----SFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       274 -----------~i~vWd~~~~----------~~~~~~~----~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                                 .|.-|.+..+          +.+..+.    .|.  ...|+|.|||.+.++.+
T Consensus        96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~G  157 (463)
T 2wg3_C           96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILG  157 (463)
T ss_dssp             SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEEC
T ss_pred             CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeC
Confidence                       3444665421          2222221    233  36799999998877754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=87.96  E-value=9.8  Score=31.07  Aligned_cols=174  Identities=9%  Similarity=0.029  Sum_probs=86.0

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCe------eeEEeee-cccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEe
Q 020021           45 SSSYLVTASDDESIRLYDVTAAT------CLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (332)
Q Consensus        45 dg~~l~tgs~D~tv~iwd~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~  117 (332)
                      ...+|+....| +++.=....+.      ...++.. .=..+..++|+|++...+.  .   ++.+.-.+..+.+....+
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~---~G~Ly~~~~~t~~~~~W~   76 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--L---NDKIYKGTPPTHDNDNWM   76 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--E---TTEEEEESCCCSTTCCHH
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--e---CCeEEEECCCCCCccccc
Confidence            44577777777 54432222211      1112211 0135678999997763333  2   344444444332221111


Q ss_pred             ecccccE--------EEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE------EEEe---cCceeEEEcCCCeEEEEEe
Q 020021          118 KGHHDRV--------VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG------LLRV---QGRPAAAYDDQGLVFAVAF  180 (332)
Q Consensus       118 ~~h~~~V--------~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~  180 (332)
                      . -...|        ..+.|.++|.+-++  .||.|.-|+..++....      .+--   .......+.+++.+.++. 
T Consensus        77 ~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-  152 (236)
T 1tl2_A           77 G-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-  152 (236)
T ss_dssp             H-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred             c-cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence            1 12233        67888899976666  67999888753322111      1100   123456778899999988 


Q ss_pred             CCEEEEEECccCCCCC----eeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEE
Q 020021          181 GGYIRMFDARKYEKGP----FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH  231 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~----~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~  231 (332)
                      ++.+.-.-........    ..... ...-.....+.|+++|.+.++.  ++.++
T Consensus       153 dg~lyr~~~P~~~~~~wl~~~~~~g-~~g~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          153 GQQFYKALPPVSNQDNWLARATKIG-QGGWDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             TTEEEEECCCSSTTCCHHHHCEEEE-SSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCcEEecCCCCCCCcccccccceec-cCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence            8875322111000000    00111 0111123445688888877766  66544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=86.24  E-value=16  Score=31.83  Aligned_cols=240  Identities=10%  Similarity=0.074  Sum_probs=116.7

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeE--Ee----eecccceeEEEEccC---CCEEEEecCCCC
Q 020021           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK--TI----NSKKYGVDLVCFTSH---PTTVIYSSKNGW   99 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~--~~----~~~~~~v~~~~~~~~---~~~~~~~s~~g~   99 (332)
                      .+...=..-..|+|.|||.++++--..+.|++++..+++...  .+    .........++++|+   ...++..-+...
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            343333456799999999988877668999999876655421  11    122345678899885   334443211112


Q ss_pred             CceeEEEEccCC----------ceEE-Eee-cccccEEEEEecCCCCeEEEeeC-------------CCcEEEEeCCCce
Q 020021          100 DESLRLLSLHDN----------KYLR-YFK-GHHDRVVSLSLCSSKDCFISGSL-------------DRTVLLWDQRAEK  154 (332)
Q Consensus       100 d~~v~v~d~~~~----------~~~~-~~~-~h~~~V~~v~~~~~~~~l~s~s~-------------Dg~i~iWd~~~~~  154 (332)
                      ++.|.-+.+..+          +.+. .+. +..+.-..+.|.|||.+.++.+.             -|.|.-.+....-
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            344555555431          1111 121 11223467999999998887652             2344333432210


Q ss_pred             -------EEEEEEecC--ceeEEEcCCCeEEEEEeC--C--EEEEEECc-cC-------C--CCCe--eEEEecCCCCCc
Q 020021          155 -------CQGLLRVQG--RPAAAYDDQGLVFAVAFG--G--YIRMFDAR-KY-------E--KGPF--DIFSVGGDISDA  209 (332)
Q Consensus       155 -------~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~--~i~vwd~~-~~-------~--~~~~--~~~~~~~~~~~v  209 (332)
                             ....+....  .....+++.+.++++-.+  +  +|....-- ++       .  ...+  ..+....+....
T Consensus       186 p~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap  265 (347)
T 3das_A          186 APGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP  265 (347)
T ss_dssp             CTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred             cCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence                   001111111  123566666666654432  1  23322110 00       0  0000  011111111123


Q ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE-eeecCCCCCcceEEEECCCCCEEEEE
Q 020021          210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISG  269 (332)
Q Consensus       210 ~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~v~~spdg~~l~sg  269 (332)
                      ..++|- +|.++...-..+.|..+.+..+..... -.........+..|+..|||..+++-
T Consensus       266 ~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          266 SGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             EEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred             cceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence            455665 567777666666777766654432110 00111123456778888888766654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=85.34  E-value=16  Score=30.85  Aligned_cols=67  Identities=16%  Similarity=0.151  Sum_probs=36.6

Q ss_pred             CCCEEEEEcCCC-----eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC--------------cEEE
Q 020021          217 DGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--------------SVYA  277 (332)
Q Consensus       217 dg~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg--------------~i~v  277 (332)
                      ++++++.|+.++     .+.+||+.+.+-...-. .+........+.  .+++.++.|+.++              .+.+
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~  272 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA-FPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWR  272 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC-CSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCeEEECCC-CCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEE
Confidence            566666666543     57888887765332211 111111111222  3677777777642              4778


Q ss_pred             EECCCCceE
Q 020021          278 WSVRSGKEV  286 (332)
Q Consensus       278 Wd~~~~~~~  286 (332)
                      +|+.+.+..
T Consensus       273 yd~~~~~W~  281 (315)
T 4asc_A          273 YNEEEKKWE  281 (315)
T ss_dssp             EETTTTEEE
T ss_pred             ecCCCChhh
Confidence            898776543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=84.95  E-value=17  Score=30.76  Aligned_cols=229  Identities=10%  Similarity=0.088  Sum_probs=105.1

Q ss_pred             EEEEEeCCCcEEEEEcCCCeeeEE-eeecccceeEEEEccCCCEEEEecCC----C----CCceeEEEEccCCceEEE--
Q 020021           48 YLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKN----G----WDESLRLLSLHDNKYLRY--  116 (332)
Q Consensus        48 ~l~tgs~D~tv~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~----g----~d~~v~v~d~~~~~~~~~--  116 (332)
                      +++.|+.  .+..||..+++-... +..........+...++...+.+...    +    ....+.++|..+++-...  
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            4444553  378899987764431 11101111222233444444554310    1    111266778776653221  


Q ss_pred             eecccccEEEEEecCCCCeEEEeeCC-------CcEEEEeCCCceEEEEEEecCc---eeEEEcCCCeEEEEEe-C----
Q 020021          117 FKGHHDRVVSLSLCSSKDCFISGSLD-------RTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVFAVAF-G----  181 (332)
Q Consensus       117 ~~~h~~~V~~v~~~~~~~~l~s~s~D-------g~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~----  181 (332)
                      +......-..+.  -+++.++.|+.+       ..+.++|+.+++....-.++..   ..++...+..++.++. +    
T Consensus        96 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  173 (318)
T 2woz_A           96 LPSARCLFGLGE--VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKC  173 (318)
T ss_dssp             BSSCBCSCEEEE--ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCB
T ss_pred             CCccccccceEE--ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCc
Confidence            111011111111  256777778765       2477888887765433222211   1222223333444443 1    


Q ss_pred             -CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC-----CeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021          182 -GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (332)
Q Consensus       182 -~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~  255 (332)
                       +.+.+||.....   ...... .........+..-++++++.|+.+     ..+.+||+.+.+-...-. .+...... 
T Consensus       174 ~~~~~~yd~~~~~---W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~-  247 (318)
T 2woz_A          174 TNRVFIYNPKKGD---WKDLAP-MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE-FPQERSSI-  247 (318)
T ss_dssp             CCCEEEEETTTTE---EEEECC-CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC-CSSCCBSC-
T ss_pred             cceEEEEcCCCCE---EEECCC-CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC-CCCcccce-
Confidence             357778875421   111110 001111111222367888887654     357788987765332111 11111111 


Q ss_pred             EEEECCCCCEEEEEcCC--------------CcEEEEECCCCceEE
Q 020021          256 EASFSPEGMFVISGSGD--------------GSVYAWSVRSGKEVA  287 (332)
Q Consensus       256 ~v~~spdg~~l~sgs~D--------------g~i~vWd~~~~~~~~  287 (332)
                       .+...+++.++.|+.+              ..+.++|+.+.+...
T Consensus       248 -~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          248 -SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             -EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred             -EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence             1222467888887754              357888887765533

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=83.99  E-value=42  Score=34.56  Aligned_cols=249  Identities=12%  Similarity=0.105  Sum_probs=126.7

Q ss_pred             CcEEEEEcCCCeeeEEeeecc-cceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEe-ecccccEEEEEecCC-
Q 020021           56 ESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF-KGHHDRVVSLSLCSS-  132 (332)
Q Consensus        56 ~tv~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~-~~h~~~V~~v~~~~~-  132 (332)
                      ..||+.+......+..+.... ..|..++..  +.+++.++    .+.+.++.+..++..... ..-.+.|.++++.+. 
T Consensus       492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~----g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~  565 (1158)
T 3ei3_A          492 ASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV----GRALYYLQIHPQELRQISHTEMEHEVACLDITPLG  565 (1158)
T ss_dssp             SCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE----TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCS
T ss_pred             CEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE----CCEEEEEEeeCCceeeecccCCCCceEEEEeecCC
Confidence            456777766555555554332 234444433  34666663    245667777655321111 123468999998763 


Q ss_pred             -----CCeEEEeeC-CCcEEEEeCCCceEEEEEEecC--cee---EEEcCCCeEEEEE-eCCEEEEEECccCCCCCee--
Q 020021          133 -----KDCFISGSL-DRTVLLWDQRAEKCQGLLRVQG--RPA---AAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFD--  198 (332)
Q Consensus       133 -----~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~~--  198 (332)
                           +++++-|.+ |+++++.++..-.......+..  .+.   ........++.++ .+|.+-.+.+... .+.+.  
T Consensus       566 ~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~-tg~l~d~  644 (1158)
T 3ei3_A          566 DSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE-TGLLSDR  644 (1158)
T ss_dssp             SSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTT-TCCEEEE
T ss_pred             CCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCC-CCccccc
Confidence                 368899997 9999999998655554443322  111   1111223344455 3676644443321 11111  


Q ss_pred             -EEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc-eEEEECCCC--CEEEEEcCCCc
Q 020021          199 -IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST-LEASFSPEG--MFVISGSGDGS  274 (332)
Q Consensus       199 -~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~v~~spdg--~~l~sgs~Dg~  274 (332)
                       ...++.  .++.-..+...|..-+.+..+....++-.. +....    .+.....+ ....|+...  .-++.. .++.
T Consensus       645 r~~~LG~--~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~----s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~  716 (1158)
T 3ei3_A          645 KKVTLGT--QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVF----SNVNLKEVNYMCPLNSDGYPDSLALA-NNST  716 (1158)
T ss_dssp             EEEECCS--SCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEE----EEBSSSCCCEEEEECCSSSTTEEEEE-CSSC
T ss_pred             eeEEcCC--CceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEE----eccChHHhceEeccCcccCCCcEEEE-cCCc
Confidence             122222  234444444445444444445555555433 33221    11111222 233564422  233333 3456


Q ss_pred             EEEEECCCCce--EEEecCCCCCCceEEeCCCeeEEEeccceEEEecc
Q 020021          275 VYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP  320 (332)
Q Consensus       275 i~vWd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~  320 (332)
                      ++|..+.+...  +.++ .....+..++++|+.+.++.+..+-...+.
T Consensus       717 LrI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~  763 (1158)
T 3ei3_A          717 LTIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDT  763 (1158)
T ss_dssp             EEEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECS
T ss_pred             eEEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEecccccc
Confidence            99998865332  2222 234567889999998877776655444443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.53  E-value=1.8  Score=43.53  Aligned_cols=38  Identities=32%  Similarity=0.463  Sum_probs=33.0

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN   73 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~   73 (332)
                      .|.++...++..+++|-+.|+++|||++.++.|+.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677777888999999999999999999999987753

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=82.80  E-value=4.8  Score=37.73  Aligned_cols=75  Identities=15%  Similarity=0.183  Sum_probs=49.8

Q ss_pred             CceeEEEcCCCCEEEEEc-CCCeEEEEEccCC------eEe---EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEE
Q 020021          208 DANVVKFSNDGRLMLLTT-MEGHIHVLDSFRG------TLL---STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYA  277 (332)
Q Consensus       208 ~v~~v~~s~dg~~l~~~~-~dg~i~i~d~~~~------~~~---~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~v  277 (332)
                      ....+.++|||+++++++ .+.++.++|..+-      +.+   ..........-...-.+|.++|.-..|---|..|--
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence            345688999999887765 6789999998631      110   000111111223345799999966666678999999


Q ss_pred             EECCC
Q 020021          278 WSVRS  282 (332)
Q Consensus       278 Wd~~~  282 (332)
                      |++.+
T Consensus       404 Wni~~  408 (638)
T 3sbq_A          404 WNMEE  408 (638)
T ss_dssp             EEHHH
T ss_pred             EeccH
Confidence            99965

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=81.17  E-value=32  Score=31.27  Aligned_cols=95  Identities=7%  Similarity=0.083  Sum_probs=53.4

Q ss_pred             CceeEEEEccCCceE-EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-ceeEEEcCCCeEEE
Q 020021          100 DESLRLLSLHDNKYL-RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFA  177 (332)
Q Consensus       100 d~~v~v~d~~~~~~~-~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  177 (332)
                      ..++-+.|+.+++.+ +.--...+    .-.+|..+.+|--. ..++.++|+++........++. ...+.+-. ...++
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~Ads----AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis-~~~l~  120 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISADS----AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVA  120 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCCSE----EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEE-TTEEE
T ss_pred             CCeEEEEECCCCCcceecccccce----eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecC-CCeEE
Confidence            346777888775432 22222222    23467666655444 5789999999888777766543 22333322 23444


Q ss_pred             EEeCCEEEEEECccCCCCCeeEEE
Q 020021          178 VAFGGYIRMFDARKYEKGPFDIFS  201 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~~~~~~~~~  201 (332)
                      ...+..|.-|++.. +..+..++.
T Consensus       121 lVT~taVyHWsi~~-~s~P~kvFd  143 (494)
T 1bpo_A          121 LVTDNAVYHWSMEG-ESQPVKMFD  143 (494)
T ss_dssp             EECSSEEEEEESSS-SCCCEEEEE
T ss_pred             EEcCCeeEEecccC-CCCchhhee
Confidence            55567788888754 233444443

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=81.08  E-value=3  Score=40.21  Aligned_cols=38  Identities=24%  Similarity=0.466  Sum_probs=31.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS   74 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~   74 (332)
                      ..|.++.+.  ..+++|-+.|+++|+||+.++.++.+..-
T Consensus       222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            457776664  67999999999999999999998877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	9e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.5 bits (228), Expect = 5e-22
 Identities = 52/311 (16%), Positives = 112/311 (36%), Gaps = 27/311 (8%)

Query: 29  SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
           +   +   ++ + FH   S +V+AS+D +I+++D       +T+      V  + F    
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 89  TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW 148
             +   S +   +          + +R   GH   V S+S+  + D  +S S D+T+ +W
Sbjct: 72  KLLASCSADMTIKLWD---FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 149 DQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEK----------- 194
           + +   C                  D  L+ + +    +R++     E            
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 195 -----GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 249
                 P   +S   + + +   K    G  +L  + +  I + D   G  L T      
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---G 245

Query: 250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV 309
             N      F   G F++S + D ++  W  ++ + + +  + +     + +   +   V
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305

Query: 310 TGSSE--LSFW 318
           TGS +  +  W
Sbjct: 306 TGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.2 bits (170), Expect = 3e-14
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
            E   S         +    K   +L++ S D++I+++DV+   CL T+      V  V 
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 254

Query: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
           F S    ++  +    D++LR+    + + ++    H   V SL    +    ++GS+D+
Sbjct: 255 FHSGGKFILSCA---DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311

Query: 144 TVLLWD 149
           TV +W+
Sbjct: 312 TVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 10/42 (23%), Positives = 27/42 (64%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 62
            ++     +   +   ++S+DFHK++ Y+VT S D+++++++
Sbjct: 276 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.2 bits (204), Expect = 1e-18
 Identities = 53/300 (17%), Positives = 94/300 (31%), Gaps = 10/300 (3%)

Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
           M    + R +  +I +M +   S  LV+AS D  + ++D      +  I  +   V    
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
           +      V     +       L +   N  +      H   +S       +  ++ S D 
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 144 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQ---GLVFAVAFGGYIRMFDARKYEKGPFDIF 200
           T  LWD    +             +        L  + A     +++D R+         
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC----RQ 220

Query: 201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 260
           +  G  SD N + F  +G      + +    + D      L TY+   +    T   SFS
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT-SVSFS 279

Query: 261 PEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 318
             G  +++G  D +   W              D     +  T   +   TGS +  L  W
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.8 bits (177), Expect = 4e-15
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 3/130 (2%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
           ++      +F  +   I+++ F  + +   T SDD + RL+D+ A   L T +       
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272

Query: 81  LVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISG 139
           +   +   +  ++ +     D +  +             GH +RV  L +        +G
Sbjct: 273 ITSVSFSKSGRLLLAG--YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330

Query: 140 SLDRTVLLWD 149
           S D  + +W+
Sbjct: 331 SWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 30/211 (14%), Positives = 70/211 (33%), Gaps = 7/211 (3%)

Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---AAA 168
           +  R  +GH  ++ ++   +     +S S D  +++WD         + ++       A 
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 169 YDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG 228
                 V          +++ +  E        + G     +  +F +D +++  +    
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS 288
                                     +  S +P+    +SG+ D S   W VR G    +
Sbjct: 166 CALWDIETG----QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221

Query: 289 WMSFDTEPPVIKWTPGSLMFVTGSSELSFWI 319
           +   +++   I + P    F TGS + +  +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRL 252

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (172), Expect = 2e-14
 Identities = 59/330 (17%), Positives = 115/330 (34%), Gaps = 37/330 (11%)

Query: 32  DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD---------LV 82
           D+   +  + F     YL T  +  + ++Y V+  + +  ++                  
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 83  CFTSHPTTVIYSSKN------GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
               +  +V +S           D  +R+  + + K +   +GH   + SL    S D  
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGY---IRMFDARK-- 191
           +SGS DRTV +WD R  +C   L ++          G    +A G     +R++D+    
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 192 -YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-- 248
             E+   +  S  G       V F+ DG+ ++  +++  + + +       S        
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 249 -------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE------ 295
                    ++  L  + +    +++SGS D  V  W  +SG  +               
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358

Query: 296 PPVIKWTPGSLMFVTGSSELSFWIPDLSKL 325
                  P   +F TGS +    I    K+
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 28  MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA------------TCLKTINSK 75
            S   +   + S+ F +    +V+ S D S++L+++  A            TC  T    
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307

Query: 76  KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
           K  V  V  T +   ++  S    D  +          L   +GH + V+S+++ +    
Sbjct: 308 KDFVLSVATTQNDEYILSGS---KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364

Query: 136 ------FISGSLDRTVLLWD 149
                 F +GS D    +W 
Sbjct: 365 GPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 28/235 (11%)

Query: 114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD-- 171
           L     H   V  +   +  +   +G  ++T  ++          L          ++  
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113

Query: 172 -------QGLVFAVAFG--------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
                     + +V F         G           +    +  + G   D   + +  
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173

Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 276
            G  ++  + +  + + D   G          +    T  A    +G ++ +GS D +V 
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQ---CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 277 AWSVRSGKEVASWMSFDTEPPV-------IKWTPGSLMFVTGSSELSFWIPDLSK 324
            W   +G  V    S +            + +T      V+GS + S  + +L  
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 1e-13
 Identities = 37/301 (12%), Positives = 80/301 (26%), Gaps = 26/301 (8%)

Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK---KYGVDLVCFTSHPTTVIY 93
           IS +    S S L+  S D S+ +Y          +      K+ +    F  +    IY
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 94  SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 153
                 +     L    +         +  +  +          +        + D R  
Sbjct: 74  VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE-VIDPRNY 132

Query: 154 KCQGLLRVQGRPAAAYDDQGLVFAVAFG---------GYIRMFDARKYEKGPFDIFSVGG 204
               +               +                  ++ F     E     I   G 
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192

Query: 205 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA------- 257
                +V     +      ++++G + V            + +   R   L         
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 258 -----SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS 312
                 FSP   F+ +   DG +  W++++ K++ ++  F+    V+K      +    +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLAT 311

Query: 313 S 313
           S
Sbjct: 312 S 312

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 7e-05
 Identities = 7/69 (10%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 171
           + ++  +   D +  + +  SK   +  S D ++ ++    +     L        +   
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL------QSLRY 55

Query: 172 QGLVFAVAF 180
           +  +    F
Sbjct: 56  KHPLLCCNF 64

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 15/135 (11%), Positives = 35/135 (25%), Gaps = 8/135 (5%)

Query: 167 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM 226
           ++ D +  V      G       R   +               N ++FS   + +     
Sbjct: 212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS 271

Query: 227 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR----S 282
           +G I   +      +  +       N       +     +   + D +    +       
Sbjct: 272 DGIISCWNLQTRKKIKNFA----KFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIE 327

Query: 283 GKEVASWMSFDTEPP 297
               + ++ FD E P
Sbjct: 328 LNASSIYIIFDYENP 342

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 10/107 (9%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
            +   + +   +    ++S++F     +L TA  D  I  +++     +K   +K     
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-AKFNEDS 296

Query: 81  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSL 127
           +V        +  ++ +   ++       +    +  + +   +  +
Sbjct: 297 VVKIACSDNILCLATSDDTFKT-------NAAIDQTIELNASSIYII 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 9e-13
 Identities = 47/326 (14%), Positives = 100/326 (30%), Gaps = 51/326 (15%)

Query: 42  FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
                + +V+ SDD +++++      CL+T+     GV       +      + +     
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82

Query: 102 SLRL-------------LSLHDNKYLRYFKGHHDRVVSLSLCSSKDC------------- 135
           +                +        R   G  D  + +    +  C             
Sbjct: 83  NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142

Query: 136 -------FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA-FGGYIRMF 187
                   +SG+ D  V +WD   E C   L+       +    G+          IR++
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW 202

Query: 188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK 247
           D                    +          +++    +  + + D   G  L T    
Sbjct: 203 DVETGNCIHTL------TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 256

Query: 248 PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP---PV--IKWT 302
              +++     F+    FVI+ S DG+V  W +++G+ + + ++ ++      V  I+ +
Sbjct: 257 NKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 303 PGSLMFVTGSS----ELSFWIPDLSK 324
              L+   GS     E    + D   
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 40/242 (16%), Positives = 71/242 (29%), Gaps = 41/242 (16%)

Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 171
           K  +  KGH D V++  L    +  +SGS D T+ +W     KC   L        +   
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65

Query: 172 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS------------------------ 207
           +  +               +  +    ++     +                         
Sbjct: 66  RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 125

Query: 208 -----------DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 256
                       A V     DGR ++    +  + V D    T L T             
Sbjct: 126 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY---- 181

Query: 257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS 316
            S   +G+ V+SGS D S+  W V +G  + +     +    ++     L+     S + 
Sbjct: 182 -SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVK 240

Query: 317 FW 318
            W
Sbjct: 241 IW 242

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 2e-11
 Identities = 28/294 (9%), Positives = 72/294 (24%), Gaps = 16/294 (5%)

Query: 32  DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-----NSKKYGVDLVCFTS 86
           ++   + ++     + ++ T      ++++D++       +      ++   +       
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 87  HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL 146
              T+I   +        L +                        SK CF   S     +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 147 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI 206
                    +         +              G    +      E            I
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

Query: 207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV 266
                + +   G  + +     ++ VL   +           +  +  L   F+  G + 
Sbjct: 228 ---FSLGYCPTGEWLAVGMESSNVEVLHVNK----PDKYQLHLHESCVLSLKFAYCGKWF 280

Query: 267 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 318
           +S   D  + AW    G  +       +       +      VTGS +   + +
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 9/111 (8%), Positives = 23/111 (20%), Gaps = 46/111 (41%)

Query: 39  SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG 98
           S+ F     + V+   D  +  +       +                             
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-------------------------- 303

Query: 99  WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
                                    V+S  +       ++GS D+   +++
Sbjct: 304 --------------------KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 33  YNGRISSMDFHKSSSYLVTASDDESIRLYDV 63
            +  + S D      Y+VT S D+   +Y+V
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.4 bits (144), Expect = 4e-11
 Identities = 34/293 (11%), Positives = 85/293 (29%), Gaps = 9/293 (3%)

Query: 34  NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY 93
           N  I+++        L +A  +  I  +D++     +        +     T+    +  
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 94  SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 153
            S +   + +       +           + + L++ +  D  ++       +    +  
Sbjct: 72  VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131

Query: 154 KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
           +           ++          VA GG        K               ++   V 
Sbjct: 132 EVP-----ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 273
           FSN+G  ++ T     +          L+  N            S+SP+ + + +GS D 
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246

Query: 274 SVYAWSVRSGKEVASWMSFDTEPPVIK---WTPGSLMFVTGSSELSFWIPDLS 323
           SV  W++    +    +        +    W   +   V+   + +    ++ 
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 2e-04
 Identities = 7/49 (14%), Positives = 15/49 (30%)

Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 160
              +   GH+  + +LS  +      S   +  +  WD        +  
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.0 bits (131), Expect = 4e-09
 Identities = 27/275 (9%), Positives = 75/275 (27%), Gaps = 34/275 (12%)

Query: 43  HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSS 95
             S +        + + ++D      +  I             V ++   +    +++  
Sbjct: 83  STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFF- 141

Query: 96  KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD------ 149
                 +   LS+      +  K      +      +      GS   ++   D      
Sbjct: 142 -LFGSSAAAGLSVPGASDDQLTKSASCFHIHPG---AAATHYLGSCPASLAASDLAAAPA 197

Query: 150 ---QRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK------YEKGPFDIF 200
                  +C G      + A A     LV+AVA         A         +       
Sbjct: 198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRK 257

Query: 201 SVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSR----NSTL 255
           +     +   +V    +   +++ T+E     +  +   + ++    +        + + 
Sbjct: 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSD 317

Query: 256 EASFSPEG--MFVISGSGDGSVYAWSVRSGKEVAS 288
               + +G      + +G   +  +   S ++ +S
Sbjct: 318 AIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.4 bits (129), Expect = 7e-09
 Identities = 31/292 (10%), Positives = 68/292 (23%), Gaps = 40/292 (13%)

Query: 46  SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW------ 99
            S +      + + ++D         I        LV   ++P     +           
Sbjct: 68  FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV--GTYPWMTSLTPDGKTLLFYQF 125

Query: 100 --DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 157
               ++ ++ L    + R         +     ++ D F     D ++       E    
Sbjct: 126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIF---PTAPDTFFMHCRDGSLAKVAFGTEGTPE 182

Query: 158 LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA-----------------RKYEKGPFDIF 200
           +   +                   G +                         E       
Sbjct: 183 ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER 242

Query: 201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA--- 257
           + G        V +      + L   +       +    +    + K   R +  E    
Sbjct: 243 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV-VVLDAKTGERLAKFEMGHE 301

Query: 258 ----SFSPEG--MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP 303
               + S +   +     +GD ++Y     SG+E+ S       P VI    
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.0 bits (125), Expect = 2e-08
 Identities = 41/296 (13%), Positives = 88/296 (29%), Gaps = 11/296 (3%)

Query: 35  GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS 94
           G    +    +   +   +   S+    V + T  +      +   +   +         
Sbjct: 18  GTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 95  SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRA 152
             +G        +   +            V  +S  S   +   +    +R   ++    
Sbjct: 77  DVHGNVRIWDT-TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135

Query: 153 EKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 212
               G L  Q R   + D +         G      A           + G      + V
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195

Query: 213 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS----RNSTLEASFSPEGMFVIS 268
           +++ DG L   T  +G I + +   GT    +    +       S    ++SP+G  + S
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255

Query: 269 GSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD 321
            S D ++  W+V + K   +  +    E   +         V+ S+   ++F  P+
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 31/266 (11%), Positives = 69/266 (25%), Gaps = 10/266 (3%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
           + S+     + +++ + +      S  Y  +     ++R++D T  T +       +   
Sbjct: 45  VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP 104

Query: 81  LVCFTSHP--TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
           +   +       +    +         L                        S     IS
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164

Query: 139 GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG--- 195
           GS D TV +++    K +       +   +          A  G            G   
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224

Query: 196 ---PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 252
                D             + +S DG  +   + +  I + +     +  T  V     +
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284

Query: 253 STLEASFSPEGMFVISGSGDGSVYAW 278
             L          ++S S +G +   
Sbjct: 285 QQL--GIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 28  MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTS 86
           +    ++G +  + +    + + +AS D++I++++V      KTI    +     +    
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291

Query: 87  HPTTVIYSSKNG----WD 100
               ++  S NG     +
Sbjct: 292 TKQALVSISANGFINFVN 309

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 4/119 (3%)

Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           I+ + F    +Y++T +DD+ IR+YD      L  ++    GV  + +      ++ S  
Sbjct: 16  ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGS 71

Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
                 +  +      ++        R + +    +    ++GS D T+ +W    E  
Sbjct: 72  TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 16/131 (12%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGL 174
            +GH   V++  L    +  I+G+ D+ + ++D   +K    L        A  Y   G+
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66

Query: 175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
           + +        +      +     +F           +    + + ++  + +  +HV  
Sbjct: 67  LVSG--STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 235 SFRGTLLSTYN 245
             + + +  + 
Sbjct: 125 LPKESSVPDHG 135

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 258 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 317
               E  +VI+G+ D  +  +   + K +      D     +K+  G +  V+GS++ + 
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTV 76

Query: 318 W 318
            
Sbjct: 77  R 77

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 38/319 (11%), Positives = 91/319 (28%), Gaps = 19/319 (5%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
             + +  +    ++G + ++ +      LV+ S D ++R++D+    C   +        
Sbjct: 40  SINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC-THVFEGHNSTV 97

Query: 81  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
                     + Y      D +L +  L     +      HD  +          F+   
Sbjct: 98  RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157

Query: 141 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 200
                 +          +          +D   +       G+     +  Y+       
Sbjct: 158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI 217

Query: 201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE---- 256
           S   D +       + +    L         +  S +  + +  +      ++       
Sbjct: 218 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF 277

Query: 257 ----------ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV-IKWTPGS 305
                      +F      ++SGS +     +++RSGK V + +  D +    + +   +
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT 336

Query: 306 LMFVTGSSELSF-WIPDLS 323
           L+        SF  I D S
Sbjct: 337 LVAAVEKDGQSFLEILDFS 355

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 34/310 (10%), Positives = 93/310 (30%), Gaps = 33/310 (10%)

Query: 22  QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 81
            S++      + +  +  + +      +V+   D +I+++D     C + +      V  
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 82  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL 141
           + +         S        +    + +          H          +    ++ S 
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL-------RFNNGMMVTCSK 113

Query: 142 DRTVLLWDQRAEKC----QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF 197
           DR++ +WD  +       + L+  +        D   + + +    I++++    E    
Sbjct: 114 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF--- 170

Query: 198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257
            + ++ G      +       RL++  + +  I + D   G  L                
Sbjct: 171 -VRTLNGH--KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR----- 222

Query: 258 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT-------EPPVIKWTPGSLMFVT 310
               +   ++SG+ DG +  W + +  +  +                V +        V+
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVS 282

Query: 311 GSSE--LSFW 318
            S +  +  W
Sbjct: 283 SSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 12/135 (8%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
             + E   +   +   I+ + +      +V+ S D +IRL+D+    CL+ +   +  V 
Sbjct: 165 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 222

Query: 81  LVCFTSHPTTVIYSSKNG----WD--ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD 134
             C       ++  + +G    WD   +L   +      LR    H  RV  L     + 
Sbjct: 223 --CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ- 279

Query: 135 CFISGSLDRTVLLWD 149
             +S S D T+L+WD
Sbjct: 280 -IVSSSHDDTILIWD 293

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 8e-08
 Identities = 35/358 (9%), Positives = 86/358 (24%), Gaps = 66/358 (18%)

Query: 34  NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY 93
           +  I S+     +S+ V+ S D  ++++D          +             H   +  
Sbjct: 14  DADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 94  SSKN----------GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK---------- 133
             ++           +   L    +      +        ++   +              
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131

Query: 134 -----DCFISGSLDRTVLLWD---------QRAEKCQGLLRVQGRPAAAYDDQGLVFAVA 179
                   ++  +  T  +W                   L +QG   +         +V 
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191

Query: 180 FGG-------------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM 226
                            I      +         S+  + +    VKFS  G L+ +   
Sbjct: 192 ISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251

Query: 227 EGHIHVLDSFRGTLLSTYNVKPVSRNST-------------LEASFSPEGMFVISGSGDG 273
                 +  +            V  +S+             +  SF+  G  + S   DG
Sbjct: 252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311

Query: 274 SVYAWSVRSGKEVASWM----SFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA 327
            +  W V++ + + +        + E  ++                  ++    + G 
Sbjct: 312 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 369

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.9 bits (112), Expect = 7e-07
 Identities = 29/297 (9%), Positives = 72/297 (24%), Gaps = 63/297 (21%)

Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           IS   ++K  + +    ++  + +Y+ +    ++                          
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-------------------------- 43

Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
                            +   K H+ +V  +      +  ++   DR   +W  +    +
Sbjct: 44  -----------------VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86

Query: 157 GLLRVQGRPAAAYD-----DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANV 211
             L +     AA       ++      +    I +    +               S    
Sbjct: 87  PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 146

Query: 212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE--------------- 256
           + +  +  L+   + +    +  ++   +       P                       
Sbjct: 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 206

Query: 257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 313
             FS  G  V   S D +V          VA+  S       + +   S +   G  
Sbjct: 207 VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD 263

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 37/304 (12%), Positives = 88/304 (28%), Gaps = 32/304 (10%)

Query: 29  SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
             +++NG+++ +D+   S+ +VT   D +  ++ +   T   T+   +      C    P
Sbjct: 46  ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 105

Query: 89  --TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-VVSLSLCSSKDCFISGSLDRTV 145
                   S +           +D    ++ K      V+SL    +     +GS D   
Sbjct: 106 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165

Query: 146 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD 205
            ++    ++ +         +     + +  + +  G++                 V   
Sbjct: 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH---------------GVCFS 210

Query: 206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265
            + + V   S+D  + L    +       +                   L  +F  E   
Sbjct: 211 ANGSRVAWVSHDSTVCLADADKKMAVATLASET-------------LPLLAVTFITESSL 257

Query: 266 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 325
           V +G  D     ++  S     S+      P        +      + +        +  
Sbjct: 258 VAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 316

Query: 326 GAYV 329
           GA +
Sbjct: 317 GAGL 320

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (113), Expect = 9e-07
 Identities = 41/315 (13%), Positives = 87/315 (27%), Gaps = 32/315 (10%)

Query: 36  RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSS 95
                D+   + + VT  D   I L D +       +++  Y V +   ++    +    
Sbjct: 22  TQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIG 80

Query: 96  KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD---CFISGSLDRTVLLWDQRA 152
           ++G    + L             G   R +  S     +              ++ D   
Sbjct: 81  RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 140

Query: 153 EKCQGLLRVQGRP---------------AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF 197
            + + +   +G                  A++     +  V   G I + D         
Sbjct: 141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT 200

Query: 198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLE 256
              S    + D          R  +      + + V+D+  G L++  +    + +    
Sbjct: 201 TEISAERFLHD---GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG 257

Query: 257 ASFSPEG---MFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGS 312
           A+F       ++  S  GD SV             +W   D+ P       G       +
Sbjct: 258 ANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP-----ALGGGSLFIKT 312

Query: 313 SELSFWIPDLSKLGA 327
              S ++   + L  
Sbjct: 313 HPNSQYLYVDATLNP 327

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 21/205 (10%), Positives = 47/205 (22%), Gaps = 25/205 (12%)

Query: 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA 168
            + + +      +    + +  +        S        D+          V  +P   
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS--FEVVSKPFVI 223

Query: 169 YDDQGLVFAVAF---------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
               G                        Y R             I  +   I   +V  
Sbjct: 224 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPV 283

Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 273
                        +G +   D     +          +N+  +   S +   V+    DG
Sbjct: 284 HGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-------KNNLTDLRLSADRKTVMVRKDDG 336

Query: 274 SVYAWSVRSGKEVASWMSFDTEPPV 298
            +Y + +   ++  + +  D  P V
Sbjct: 337 KIYTFPLEKPEDERT-VETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 6e-05
 Identities = 21/180 (11%), Positives = 43/180 (23%), Gaps = 12/180 (6%)

Query: 23  SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV 82
                 +    N    +  F   S  L   S        D         + SK + + L+
Sbjct: 167 EGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226

Query: 83  CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF-----------KGHHDRVVSLSLCS 131
             + +PT ++  S         L  ++                   +             
Sbjct: 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE 286

Query: 132 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
               +        +L +D +  K   +         + D + ++      G I  F   K
Sbjct: 287 FAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVR-KDDGKIYTFPLEK 345

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 1e-05
 Identities = 33/286 (11%), Positives = 81/286 (28%), Gaps = 17/286 (5%)

Query: 29  SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
           +   +N  I+++  +     L++ S D  I  +  ++     +         +V   +  
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNL-------IVSLDNSK 56

Query: 89  TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW 148
                S        +  ++ H+          ++   +  L +  D  I  S    ++  
Sbjct: 57  AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 116

Query: 149 DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD 208
            +       +   Q   A   ++   +           FD +   +      S+    + 
Sbjct: 117 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 176

Query: 209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268
                      L  L + E              S  N                E   V +
Sbjct: 177 IAAGDVMGKILLYDLQSREVKTSRWAFRT----SKINAISWKPAEKGANEEEIEEDLVAT 232

Query: 269 GSGDGSVYAWSVRSGKEVASWMSFDTEPPV-IKWTPGSLMFVTGSS 313
           GS D +++ +SV+   ++   ++   +    + W   S   V+  +
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA 277

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 98  GWDESLRLLSLHDN-KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
             D ++ + S+    K ++    H D V +L    +    +S   D  +  W+
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL-WETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
            ++ L+   GH+  + +L++       ISGS D  ++ W 
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWS 37

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 21/261 (8%), Positives = 62/261 (23%), Gaps = 26/261 (9%)

Query: 28  MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
            +       + +                  + ++        K + +      +    + 
Sbjct: 94  FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA 153

Query: 88  PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 147
               +Y +          + +   KY       +      S       +   S      +
Sbjct: 154 DDGSLYVAGPDI----YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 209

Query: 148 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS 207
                         +  PA A    G +      G       +++       F+      
Sbjct: 210 LYT----IARFKDDKQDPATADLLYGYLSVDLKTGKTHT---QEFADLTELYFTGLRSPK 262

Query: 208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI 267
           D N +    +            +   D  +  L+   N+     ++    +F  +G  + 
Sbjct: 263 DPNQIYGVLN-----------RLAKYDLKQRKLIKAANLD----HTYYCVAFDKKGDKLY 307

Query: 268 SGSGDGSVYAWSVRSGKEVAS 288
            G     +  ++  + ++V +
Sbjct: 308 LGGTFNDLAVFNPDTLEKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 24/286 (8%), Positives = 59/286 (20%), Gaps = 21/286 (7%)

Query: 42  FHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWD 100
                 Y++  +   ++ + DV + T  K+     K+G           T      N   
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVL--NNHY 61

Query: 101 ESLRLLSLHDNKYLRYF------KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK 154
             +  + L   K   +             + S ++        +       L        
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND--HYVV 119

Query: 155 CQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF 214
               L V              F +    Y+                      +    V  
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVAL 179

Query: 215 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS 274
                     +    ++           +               F  +     +      
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA--------RFKDDKQDPATADLLYG 231

Query: 275 VYAWSVRSGKEVASWMSFDTE--PPVIKWTPGSLMFVTGSSELSFW 318
             +  +++GK      +  TE     ++            + L+ +
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKY 277

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 3/91 (3%)

Query: 212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV-ISGS 270
                    M++T    ++HV+D    T+  +  +       T     +P+     +  +
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTA--MMAPDNRTAYVLNN 59

Query: 271 GDGSVYAWSVRSGKEVASWMSFDTEPPVIKW 301
             G +Y   + + K             V + 
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRS 90

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 24/291 (8%), Positives = 59/291 (20%), Gaps = 37/291 (12%)

Query: 32  DYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDL-----VCFT 85
           D                   T +  ES+   D+     L  I+       +        +
Sbjct: 31  DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS 90

Query: 86  SHPTTVIYSSKNGWDESLRLLSLHDNKY--------LRYFKGHHDRVVSLSLCSSKDCFI 137
               T+         E                     R       ++  L+         
Sbjct: 91  PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY 150

Query: 138 SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA-------- 189
               D  V+  +         ++       A  D   V+       +             
Sbjct: 151 GLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID 210

Query: 190 -RKYEKGPFDIFSVGGDISDANVVKFSNDGRLM----------LLTTMEGHIHVLDSFRG 238
                     + ++  +  +  + +                          +   D  + 
Sbjct: 211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN 270

Query: 239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW 289
             +    +     +S    + S +G  V  G   G + A+   + ++    
Sbjct: 271 ASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 21/253 (8%), Positives = 55/253 (21%), Gaps = 13/253 (5%)

Query: 48  YLVTASDDESIRLYDVTAATCLKTINSKKYG--VDLVCFTSHPTTVIYSSKNGWDESLRL 105
           Y++  +  + + + D       K I     G    +            +      ESL  
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYAT--VNKSESLVK 60

Query: 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 165
           + L   + L                       + S D   L   +   + +         
Sbjct: 61  IDLVTGETLGRIDLSTPEE-----RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115

Query: 166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT 225
             A  D   +         R      + +    ++ +G D+   +    +      + + 
Sbjct: 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW 175

Query: 226 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE 285
                   D          +    +   T       +       +    +    + +G+ 
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYT----ARKDIDPADPTAYRTGLLTMDLETGEM 231

Query: 286 VASWMSFDTEPPV 298
               +        
Sbjct: 232 AMREVRIMDVFYF 244

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 13/148 (8%), Positives = 30/148 (20%), Gaps = 10/148 (6%)

Query: 33  YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
                      K        +    +   D+                      +   T  
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255

Query: 93  YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152
           +         L    L  N  ++          S+++ +       G     +  +D   
Sbjct: 256 FG----AYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

Query: 153 EKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
            + +G + + G          L     F
Sbjct: 311 LEKKGQVDLPGNA-----SMSLASVRLF 333

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.4 bits (95), Expect = 9e-05
 Identities = 35/275 (12%), Positives = 76/275 (27%), Gaps = 17/275 (6%)

Query: 17  SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSK 75
           S ++  ++ VG                   + + V  +    + + D         I + 
Sbjct: 21  SNKVTATIPVG-------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---IATV 70

Query: 76  KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
             G         P        N    +L ++    N      K     +        K  
Sbjct: 71  PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKL 130

Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVAFGGYIRMFDARKYEK 194
           +++ + D+TV + +   +     + V   P   A    G    VA    + +        
Sbjct: 131 YVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190

Query: 195 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 254
              D   V    S   V        +  +      + ++D+    + +   V P      
Sbjct: 191 SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAG-- 248

Query: 255 LEASFSPEGMFV-ISGSGDGSVYAWSVRSGKEVAS 288
              + +P+G  V ++ S   +V      +    A+
Sbjct: 249 --IAVTPDGKKVYVALSFCNTVSVIDTATNTITAT 281

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 9e-05
 Identities = 30/307 (9%), Positives = 75/307 (24%), Gaps = 22/307 (7%)

Query: 34  NGRISSMDFHKSSSYLVTAS-DDESIRLYDVTAATCLKTI---NSKKYGVDLVCFTSHPT 89
               + + +  +++ +         +R  D   +     +         V  V F+    
Sbjct: 17  RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 90  TVIYSS-------KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS--KDCFISGS 140
           +    S               +  +  +      F+     +  +S      + C +   
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 141 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 200
            D   +     +    G +    +   A   +      +                     
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 196

Query: 201 SVGGDISDAN----VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 256
           S        +    V    + G  ++    +  I   D   G  L             + 
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256

Query: 257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT---PGSLMFVTGSS 313
           A    +     +   D ++  W V + K V  W     +    +      G+   ++ S 
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 314 E--LSFW 318
           +  L+F+
Sbjct: 317 DGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 40  MDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKN 97
                 S    T   D +IR++DVT + C++      ++ G   V   +     I S   
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL-- 314

Query: 98  GWDESLRLLSL 108
             D +L    L
Sbjct: 315 SLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 98  GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC---SSKDCFISGSLDRTVLLWD 149
           G D ++R+  +  +K ++ +     ++ +  +    +     IS SLD T+  ++
Sbjct: 270 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 30/263 (11%), Positives = 67/263 (25%), Gaps = 18/263 (6%)

Query: 35  GRISSMDFH--KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYG--------VDLVCF 84
             ++++ F   K S YL +  +   + ++  T      ++              +  + +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 85  TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 144
                 +    +   D     +S      L    GH  R+ +  L  S+        D  
Sbjct: 124 DFEGRRLCVVGEG-RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182

Query: 145 VLLWDQRAEKCQGLLRVQG-------RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF 197
            +++ Q                    R      D G                 K  +   
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242

Query: 198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257
            I      +          D +       +  I V D      +  + +      +    
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302

Query: 258 SFSPEGMFVISGSGDGSVYAWSV 280
             +     +IS S DG++  + +
Sbjct: 303 VVATGNGRIISLSLDGTLNFYEL 325

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 28/258 (10%), Positives = 73/258 (28%), Gaps = 25/258 (9%)

Query: 48  YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 107
           + VT  D   I L D  +   +K I++  Y V +   ++    ++   ++   + + L +
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDARIDMIDLWA 92

Query: 108 LHDN--KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR 164
                   ++          S       +             + D    + + ++  +G 
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 165 P---------------AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA 209
                            A+++    +  V   G + + + +  +            ++D 
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD- 211

Query: 210 NVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFV-- 266
               + +  R  +      +   +   +   L +  +V              P+   V  
Sbjct: 212 --GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 269

Query: 267 ISGSGDGSVYAWSVRSGK 284
            S  GDGS+         
Sbjct: 270 TSHLGDGSISLIGTDPKN 287

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.48
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.25
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.21
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.15
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.15
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.08
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.07
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.04
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.81
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.76
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.68
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.66
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.55
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.53
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.38
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.3
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.09
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.09
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.08
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.99
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.81
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.58
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.05
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.92
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.57
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.38
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.3
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.26
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.14
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.81
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.79
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.74
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.1
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.09
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.77
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	91.05
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.24
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.73
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.71
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	86.29
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	86.28
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	84.68
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	81.91
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	81.18
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	80.74
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	80.72

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-42  Score=298.22  Aligned_cols=285  Identities=18%  Similarity=0.303  Sum_probs=244.4

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      ....+|+||.++|++|+|+|++++|+||+.|++|+|||+.+++++.++..|...|..+++++++..++.+..   +..+.
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~---~~~~~   84 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA---DMTIK   84 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET---TSCCC
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc---ccccc
Confidence            345679999999999999999999999999999999999999999999999999999999999998887764   67899


Q ss_pred             EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEEE-EEeC
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFA-VAFG  181 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~  181 (332)
                      .|+....+....+.+|...+..+.++++++.+++++.|+.+++||+++++....+..+.  .....+++++.+++ ++.|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          85 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC
Confidence            99999988888899999999999999999999999999999999999988877765443  23456667665554 5568


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC--------------------CCEEEEEcCCCeEEEEEccCCeEe
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND--------------------GRLMLLTTMEGHIHVLDSFRGTLL  241 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--------------------g~~l~~~~~dg~i~i~d~~~~~~~  241 (332)
                      +.|++|+.+....    ...+.++...+..+.++|+                    +.++++++.|+.|++||..+++.+
T Consensus       165 ~~v~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  240 (317)
T d1vyhc1         165 QTVRVWVVATKEC----KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  240 (317)
T ss_dssp             SCEEEEETTTCCE----EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             CeEEEEeecccee----eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence            9999999876431    2233344445556666554                    457899999999999999999998


Q ss_pred             EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          242 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      .++.   .|...+..++|+|++++|++|+.||.|++||+.+++.+..+..|...|++++|+|++++|++|+.|  +++|+
T Consensus       241 ~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         241 MTLV---GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEE---CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEe---CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            8876   466788999999999999999999999999999999999999999999999999999999999988  67774

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.9e-41  Score=302.24  Aligned_cols=293  Identities=20%  Similarity=0.329  Sum_probs=228.8

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee------------------cccceeEEEEccCC
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS------------------KKYGVDLVCFTSHP   88 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~------------------~~~~v~~~~~~~~~   88 (332)
                      ++++ +|++.|++|+|+|||++||+|+ |++|+|||+.+++++..+..                  |...|..++|++++
T Consensus        56 ~~~~-~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~  133 (388)
T d1erja_          56 HKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG  133 (388)
T ss_dssp             EEEE-ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred             EeeC-CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC
Confidence            3444 6999999999999999999987 89999999999988776543                  34458899999999


Q ss_pred             CEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeE
Q 020021           89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAA  167 (332)
Q Consensus        89 ~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~  167 (332)
                      ..+++++.   |+.|++||...++.+..+.+|...|.++.+++++..+++++.|+.+++||.++............ ...
T Consensus       134 ~~l~s~~~---dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  210 (388)
T d1erja_         134 KFLATGAE---DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV  210 (388)
T ss_dssp             SEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred             Ccceeccc---ccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccc
Confidence            99988865   88999999999999999999999999999999999999999999999999998877665544332 223


Q ss_pred             EE-cCCCeEE-EEEeCCEEEEEECccCCCCCe---eEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeE
Q 020021          168 AY-DDQGLVF-AVAFGGYIRMFDARKYEKGPF---DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS  242 (332)
Q Consensus       168 ~~-~~~~~~~-~~~~~~~i~vwd~~~~~~~~~---~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~  242 (332)
                      .+ ..++.++ +++.|+.|++||.+.......   ......++...+.+++|+|+++++++++.||.|++||+.++....
T Consensus       211 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  290 (388)
T d1erja_         211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS  290 (388)
T ss_dssp             EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred             cccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccc
Confidence            33 3345444 455689999999875432100   011223456789999999999999999999999999997665432


Q ss_pred             Eee---------ecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEE------eCCCeeE
Q 020021          243 TYN---------VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK------WTPGSLM  307 (332)
Q Consensus       243 ~~~---------~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~------~sp~~~~  307 (332)
                      ...         ....|...+.+++|+|++++|++|+.||+|++||+.+++++..+..|...|.+++      |+|++.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~  370 (388)
T d1erja_         291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV  370 (388)
T ss_dssp             --------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEE
T ss_pred             ccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCE
Confidence            211         1123567788999999999999999999999999999999999999999998886      5789999


Q ss_pred             EEeccceEEEecccccc
Q 020021          308 FVTGSSELSFWIPDLSK  324 (332)
Q Consensus       308 l~t~~~d~~~w~~~~~~  324 (332)
                      |+||+.|.++..|++++
T Consensus       371 l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         371 FATGSGDCKARIWKYKK  387 (388)
T ss_dssp             EEEEETTSEEEEEEEEE
T ss_pred             EEEEeCCCEEEEEeeee
Confidence            99999884444444443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-39  Score=286.30  Aligned_cols=287  Identities=18%  Similarity=0.243  Sum_probs=238.6

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++..++|+||+++|++|+|+|++++||||+.|++|+|||+.++++++.+..|...|..++|+|++..+++++.   |+.+
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---d~~i  121 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL---DNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEET---TCCE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecc---ccee
Confidence            4677899999999999999999999999999999999999999999999999999999999999999988865   7899


Q ss_pred             EEEEccCCc----eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEcCCC-eEE
Q 020021          104 RLLSLHDNK----YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQG-LVF  176 (332)
Q Consensus       104 ~v~d~~~~~----~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~-~~~  176 (332)
                      ++|+.....    ....+.+|.......... .+..++....|.....|+...............  ......+.. .++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ecccccccccccccceecccccccccccccc-cccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence            999976543    456777888777665554 456788889999999999877665544433222  233344444 455


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  256 (332)
                      ++..++.|++||++...    ......+|...+.+++|+|+++++++++.||.|++||......+..+... .+...+..
T Consensus       201 ~~~~d~~v~i~d~~~~~----~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~-~~~~~i~~  275 (340)
T d1tbga_         201 SGACDASAKLWDVREGM----CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD-NIICGITS  275 (340)
T ss_dssp             EEETTTEEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-TCCSCEEE
T ss_pred             EeecCceEEEEECCCCc----EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccc-cccCceEE
Confidence            56678999999987542    23445567788999999999999999999999999999988877666433 34567889


Q ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       257 v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      ++|+|++++|++|+.||+|++||+.+++.+..+.+|..+|++|+|+|++.+|+||+.|  +++|+
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999987  78885

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-40  Score=293.68  Aligned_cols=282  Identities=11%  Similarity=0.169  Sum_probs=231.0

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeE-----EeeecccceeEEEEccCCCEEEEecCCC
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK-----TINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~s~~g   98 (332)
                      .+.+.+| +|..+|.+|+|+|+|++|+||+ |++|+|||+.++....     ....|...|..++|+|+++.+++++.  
T Consensus        42 ~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~--  117 (337)
T d1gxra_          42 ARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE--  117 (337)
T ss_dssp             EEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES--
T ss_pred             ceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec--
Confidence            3445555 8999999999999999999998 8999999997654332     23356778999999999999988764  


Q ss_pred             CCceeEEEEccCC--ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCe
Q 020021           99 WDESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGL  174 (332)
Q Consensus        99 ~d~~v~v~d~~~~--~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~  174 (332)
                       |++|++||+...  +....+.+|...|..+.|+|++..+++++.|+.|++||++++++......+.  .....+++.+.
T Consensus       118 -dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  196 (337)
T d1gxra_         118 -ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT  196 (337)
T ss_dssp             -SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             889999998754  4567788999999999999999999999999999999999988766554332  23455666654


Q ss_pred             -EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021          175 -VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (332)
Q Consensus       175 -~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (332)
                       ++.++.++.+++||++..+  .+..+   .+...+.+++|+|+++++++++.|+.+++||+.+++.....    .|...
T Consensus       197 ~~~~~~~d~~v~i~d~~~~~--~~~~~---~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~  267 (337)
T d1gxra_         197 KLWTGGLDNTVRSWDLREGR--QLQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH----LHESC  267 (337)
T ss_dssp             EEEEEETTSEEEEEETTTTE--EEEEE---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC----CCSSC
T ss_pred             ccccccccccccccccccce--eeccc---ccccceEEEEEcccccccceecccccccccccccccccccc----ccccc
Confidence             4455568999999997643  12222   24567899999999999999999999999999988765432    46678


Q ss_pred             ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      +..++|+|+|++|++|+.||+|++||+.+++.+..+. |...|.+++|+|++++|++++.|  +++|+.
T Consensus       268 i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            8999999999999999999999999999998887654 67789999999999999999887  778864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-39  Score=287.98  Aligned_cols=256  Identities=19%  Similarity=0.241  Sum_probs=213.8

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee--EEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   99 (332)
                      .+.+..+.|.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++..  ..+..|..+|..++|++++..+++++. +.
T Consensus        46 ~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~-~~  124 (311)
T d1nr0a1          46 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE-GR  124 (311)
T ss_dssp             TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEEC-CS
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccc-cc
Confidence            456778889999999999999999999999999999999999887654  457778889999999999998888763 44


Q ss_pred             CceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  178 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      +..+++|++++++....+.+|.+.|++++|+|+++ .|++|+.|++|++||+++.++...+                   
T Consensus       125 ~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~-------------------  185 (311)
T d1nr0a1         125 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-------------------  185 (311)
T ss_dssp             SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-------------------
T ss_pred             cccccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccc-------------------
Confidence            67899999999999999999999999999999987 4899999999999999876543222                   


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec----CCCCCcc
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----PVSRNST  254 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~  254 (332)
                                              ..+...+.++.++|+++++++++.|+.|++||...+.....+...    ..|...+
T Consensus       186 ------------------------~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V  241 (311)
T d1nr0a1         186 ------------------------GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV  241 (311)
T ss_dssp             ------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             ------------------------ccccccccccccCccccccccccccccccccccccccccccccccccccccccccc
Confidence                                    123356788999999999999999999999999998887766532    2356778


Q ss_pred             eEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCC-CCceEEeCCCeeEEEeccce--EEEeccc
Q 020021          255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT-EPPVIKWTPGSLMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       255 ~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~t~~~d--~~~w~~~  321 (332)
                      .+++|+|++++|++|+.||+|+|||+.+++++.++..|.. ....+.+.+++..+++++.|  +++|++|
T Consensus       242 ~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            9999999999999999999999999999999888876653 23344454555567776655  9999885

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-38  Score=275.17  Aligned_cols=286  Identities=13%  Similarity=0.189  Sum_probs=217.6

Q ss_pred             cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++.+++.||+++|++|+|+|++++|+||+.|++|++||+.++++++.+. .|...|..++|++++..++.+    .|+.+
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~----~d~~v   78 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS----WDDHL   78 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE----TTTEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeeccc----ceeeE
Confidence            4678999999999999999999999999999999999999999998875 577889999999998655443    38899


Q ss_pred             EEEEccCCce---EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE-E
Q 020021          104 RLLSLHDNKY---LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV-A  179 (332)
Q Consensus       104 ~v~d~~~~~~---~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  179 (332)
                      ++|+......   ......|...+..++|+++++.+++++ ++.+++|+...  ..............+++++.++++ +
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~g~  155 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVPISYNSSCVALSNDKQFVAVGG  155 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEECSSCEEEEEECTTSCEEEEEE
T ss_pred             EEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--cccccccccccccccccccccccccc
Confidence            9999865431   223456778899999999998776655 56899998542  222222223345667777765554 5


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~  259 (332)
                      .++.|++||++....   .......+...+.+++|+|+++++++++.|+.|++||+.++..+........|...+.+++|
T Consensus       156 ~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  232 (299)
T d1nr0a2         156 QDSKVHVYKLSGASV---SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW  232 (299)
T ss_dssp             TTSEEEEEEEETTEE---EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred             ccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            689999999875432   12222245568999999999999999999999999999887665444333456778999999


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceE--EEecCCC-CCCceEEeCCCeeEEEeccce--EEEeccc
Q 020021          260 SPEGMFVISGSGDGSVYAWSVRSGKEV--ASWMSFD-TEPPVIKWTPGSLMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       260 spdg~~l~sgs~Dg~i~vWd~~~~~~~--~~~~~~~-~~v~~l~~sp~~~~l~t~~~d--~~~w~~~  321 (332)
                      +|++++|++|+.||+|++||+.++...  .....|. ..+.++.| |++.+|++++.|  +++|+..
T Consensus       233 s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             cccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            999999999999999999999876543  2223333 44555655 566788888887  8888753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=261.06  Aligned_cols=287  Identities=18%  Similarity=0.287  Sum_probs=210.0

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~  101 (332)
                      ..++..++|+||+++|.+ +++++|++|||||.|++|+|||+.++++++++.+|...|..++|+++  .+++++.   |+
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~---D~   77 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGST---DR   77 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEET---TS
T ss_pred             CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--cccccee---cc
Confidence            456788899999999865 36667999999999999999999999999999999999999999864  6666653   77


Q ss_pred             eeEEEEccCCceEEEeecccccEEEE--------------------------------------EecCCCCeEEEeeCCC
Q 020021          102 SLRLLSLHDNKYLRYFKGHHDRVVSL--------------------------------------SLCSSKDCFISGSLDR  143 (332)
Q Consensus       102 ~v~v~d~~~~~~~~~~~~h~~~V~~v--------------------------------------~~~~~~~~l~s~s~Dg  143 (332)
                      ++++|+............+...+...                                      ...+....+++++.|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            88888876655433333222222211                                      1223345677888888


Q ss_pred             cEEEEeCCCceEEEEEEecCceeEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEE
Q 020021          144 TVLLWDQRAEKCQGLLRVQGRPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML  222 (332)
Q Consensus       144 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  222 (332)
                      .|++||.+...+...+..+......... +..+++++.|+.|++||++..+    ......++...+.++  ++++++++
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~--~~~~~~l~  231 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN----CIHTLTGHQSLTSGM--ELKDNILV  231 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC----EEEEECCCCSCEEEE--EEETTEEE
T ss_pred             eEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccce----eeeEecccccceeEE--ecCCCEEE
Confidence            8888888777766655444333333333 4456666779999999987543    223344555555554  45567999


Q ss_pred             EEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec-----CCCCCCc
Q 020021          223 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM-----SFDTEPP  297 (332)
Q Consensus       223 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~-----~~~~~v~  297 (332)
                      +++.|+.|++||....+....+.....+...+..+++  +++++++|+.||+|++||+.+++.+..+.     .|...|+
T Consensus       232 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~  309 (342)
T d2ovrb2         232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW  309 (342)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEE
T ss_pred             EEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEE
Confidence            9999999999999988887777655555555555555  56799999999999999999999887763     4677899


Q ss_pred             eEEeCCCeeEEEeccce----EEEecccc
Q 020021          298 VIKWTPGSLMFVTGSSE----LSFWIPDL  322 (332)
Q Consensus       298 ~l~~sp~~~~l~t~~~d----~~~w~~~~  322 (332)
                      +++|+|++.++++|+.|    .++|.|+.
T Consensus       310 ~v~~s~~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         310 RIRASNTKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             EEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence            99999999999998765    44555543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-36  Score=273.09  Aligned_cols=244  Identities=12%  Similarity=0.113  Sum_probs=202.8

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (332)
Q Consensus        34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~  111 (332)
                      ..+|+|++|+|||++||+|+.|++|+|||+++++  ++..+.+|..+|..++|+|++..+++++.   |++|++||+.++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~---D~~i~vWd~~~~   83 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT---DRNAYVWTLKGR   83 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET---TSCEEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC---CCeEEEEeeccc
Confidence            3789999999999999999999999999998775  66778899999999999999999988764   889999999887


Q ss_pred             ce--EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEEC
Q 020021          112 KY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA  189 (332)
Q Consensus       112 ~~--~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~  189 (332)
                      ..  ...+.+|...|.+++|+|+++.|++++.|+++++|++..........                             
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~-----------------------------  134 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-----------------------------  134 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-----------------------------
T ss_pred             ccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc-----------------------------
Confidence            64  44567899999999999999999999999999999875443211110                             


Q ss_pred             ccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe------------------EeEEeeecCCCC
Q 020021          190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT------------------LLSTYNVKPVSR  251 (332)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~~~~~~~  251 (332)
                                .....+...+.+++|+|+|+++++++.|+.|++||.....                  .+...   ..+.
T Consensus       135 ----------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  201 (371)
T d1k8kc_         135 ----------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES---SSSC  201 (371)
T ss_dssp             ----------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC---CCCS
T ss_pred             ----------ccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeec---cCcc
Confidence                      0111234567889999999999999999999999975432                  12211   2456


Q ss_pred             CcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce-EEEecccc
Q 020021          252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSFWIPDL  322 (332)
Q Consensus       252 ~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d-~~~w~~~~  322 (332)
                      ..+..++|+|+|++|++++.|++|++||+.+++.+..+..|..+|.+++|+|++++|++|+++ +.+|.++.
T Consensus       202 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         202 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             CcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence            678899999999999999999999999999999999999999999999999999999988765 67776644

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-35  Score=260.31  Aligned_cols=242  Identities=17%  Similarity=0.275  Sum_probs=207.2

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC--CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      ...+.+|++.|.+++|+|++++|++|+.|++|++||+..  .+....+..|...+..+++++++..+++++.   |+.++
T Consensus        90 ~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~  166 (337)
T d1gxra_          90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS---DGNIA  166 (337)
T ss_dssp             EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET---TSCEE
T ss_pred             EeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccc---ccccc
Confidence            344678999999999999999999999999999999874  4556677788888999999999998888764   78999


Q ss_pred             EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEE-EEeCC
Q 020021          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFA-VAFGG  182 (332)
Q Consensus       105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~  182 (332)
                      +|++.+++......+|...|.+++|++++..+++++.|+.+++||+++++....+..... ....+++.+..++ ++.++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~  246 (337)
T d1gxra_         167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccc
Confidence            999999999999999999999999999999999999999999999999988776654433 3456677665554 55689


Q ss_pred             EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (332)
Q Consensus       183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd  262 (332)
                      .+++||++..+     ......+...+..++|+|+|+++++++.||.|++||..+++.+..+.    +...+.+++|+||
T Consensus       247 ~i~i~d~~~~~-----~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~d  317 (337)
T d1gxra_         247 NVEVLHVNKPD-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVD  317 (337)
T ss_dssp             CEEEEETTSSC-----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECTT
T ss_pred             ccccccccccc-----cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc----CCCCEEEEEEeCC
Confidence            99999997543     23344566789999999999999999999999999999998887654    4578889999999


Q ss_pred             CCEEEEEcCCCcEEEEEC
Q 020021          263 GMFVISGSGDGSVYAWSV  280 (332)
Q Consensus       263 g~~l~sgs~Dg~i~vWd~  280 (332)
                      +++|++|+.||+|+|||+
T Consensus       318 ~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         318 DKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SCEEEEEETTSCEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEE
Confidence            999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-34  Score=254.19  Aligned_cols=242  Identities=12%  Similarity=0.162  Sum_probs=204.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~  112 (332)
                      +.+.+..++++|+|+.|+.++ ++.+.+||+.+++..+.+.+|...|.+++|+|++..+++++.   |++|++||+.+++
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~---dg~i~iwd~~~~~   91 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV---HGNVRIWDTTQTT   91 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEESSSTT
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEecccc---CceEeeeeeeccc
Confidence            445666889999999999875 667999999999999999999999999999999999988864   8899999998876


Q ss_pred             e--EEEeecccccEEEEEecCCCCeEEEeeC--CCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE
Q 020021          113 Y--LRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD  188 (332)
Q Consensus       113 ~--~~~~~~h~~~V~~v~~~~~~~~l~s~s~--Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd  188 (332)
                      .  ...+.+|.++|.+++|+|++++|++++.  |+.+++|++++++....+                             
T Consensus        92 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l-----------------------------  142 (311)
T d1nr0a1          92 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL-----------------------------  142 (311)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC-----------------------------
T ss_pred             cccccccccccCccccccccccccccccccccccccccccccccccccccc-----------------------------
Confidence            4  3568899999999999999999999985  566999998766432111                             


Q ss_pred             CccCCCCCeeEEEecCCCCCceeEEEcCCCCE-EEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEE
Q 020021          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (332)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~  267 (332)
                                    .+|...+.+++|+|++++ +++++.|+.|++||..+++....+.   .|...+.+++|+|++++++
T Consensus       143 --------------~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~---~~~~~i~~v~~~p~~~~l~  205 (311)
T d1nr0a1         143 --------------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG---EHTKFVHSVRYNPDGSLFA  205 (311)
T ss_dssp             --------------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC---CCSSCEEEEEECTTSSEEE
T ss_pred             --------------cccccccccccccccceeeecccccccccccccccccccccccc---cccccccccccCccccccc
Confidence                          134456788999999985 7789999999999999988877665   4677899999999999999


Q ss_pred             EEcCCCcEEEEECCCCceEEEe-------cCCCCCCceEEeCCCeeEEEeccce--EEEecccccc
Q 020021          268 SGSGDGSVYAWSVRSGKEVASW-------MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSK  324 (332)
Q Consensus       268 sgs~Dg~i~vWd~~~~~~~~~~-------~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~  324 (332)
                      +++.|+.|++||+.+++.+..+       ..|.+.|++++|+|++++|++|+.|  +++|+....+
T Consensus       206 ~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         206 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999999998877665       3578889999999999999999887  8889875433

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-34  Score=254.33  Aligned_cols=292  Identities=13%  Similarity=0.114  Sum_probs=209.2

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEE---eeecccceeEEEEccCCCE-EEEecCCCC
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT---INSKKYGVDLVCFTSHPTT-VIYSSKNGW   99 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~-~~~~s~~g~   99 (332)
                      |+++..+.+|++.|++|+|+|++++|||||.|++|||||+.++.....   ...|..+|.+++|++++.. +++++   .
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~---~   77 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT---V   77 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE---T
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc---c
Confidence            456777899999999999999999999999999999999976544332   3357888999999987665 55544   4


Q ss_pred             CceeEEEEccCCceEEEeecccccE-EEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe--cC------ceeEEE-
Q 020021          100 DESLRLLSLHDNKYLRYFKGHHDRV-VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QG------RPAAAY-  169 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~~~V-~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~------~~~~~~-  169 (332)
                      |+++++|++..+........+...+ ....+.++...+++++.|+++++||++..........  ..      ...... 
T Consensus        78 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             ccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence            8899999998887776666555443 4455667888999999999999999865433222211  11      111222 


Q ss_pred             cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeE-EEcCCCCEEEEEcCCCeEEEEEccCCeEeE------
Q 020021          170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV-KFSNDGRLMLLTTMEGHIHVLDSFRGTLLS------  242 (332)
Q Consensus       170 ~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v-~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~------  242 (332)
                      .....++.++.++.|++||++............ ........+ .+++++..+++++.||.+.+|+........      
T Consensus       158 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~  236 (342)
T d1yfqa_         158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             ccCCceeeecCCCcEEEEecccCcccceeeeec-ccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc
Confidence            234456667789999999998655433222222 222233333 445678899999999999999975432110      


Q ss_pred             Eee------ecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--
Q 020021          243 TYN------VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--  314 (332)
Q Consensus       243 ~~~------~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--  314 (332)
                      .+.      ....+...+.+++|+|++++||||+.||.|++||+.+++.+..+..+. ....++|+|++++|+++++|  
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~  315 (342)
T d1yfqa_         237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDT  315 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTH
T ss_pred             eeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCc
Confidence            110      112234567789999999999999999999999999999988876543 46788899999999888776  


Q ss_pred             EEEecc
Q 020021          315 LSFWIP  320 (332)
Q Consensus       315 ~~~w~~  320 (332)
                      .+.|..
T Consensus       316 ~~~~~~  321 (342)
T d1yfqa_         316 FKTNAA  321 (342)
T ss_dssp             HHHCSS
T ss_pred             EEEeee
Confidence            555654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-33  Score=245.66  Aligned_cols=281  Identities=17%  Similarity=0.305  Sum_probs=209.8

Q ss_pred             eeEeccCCCcE-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           27 GMSFRDYNGRI-SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        27 ~~~l~~h~~~I-~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      .-+|+||.+.| +|++|  ++++|+||+.|++|+|||+.++++++++.+|..+|..++|+++ ..+++++.   |+++++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~---D~~i~i   78 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST---DRTVRV   78 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEET---TCCEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEec---cccccc
Confidence            45699999885 66665  5789999999999999999999999999999999999999885 46666653   889999


Q ss_pred             EEccCCceEEEeeccc--ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec---------------------
Q 020021          106 LSLHDNKYLRYFKGHH--DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---------------------  162 (332)
Q Consensus       106 ~d~~~~~~~~~~~~h~--~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~---------------------  162 (332)
                      |++...+.......+.  ..+....+.++++.+++++.|++|++||+++..........                     
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            9999988766555433  44556677888999999999999999999876543222110                     


Q ss_pred             --CceeEEEcCC-CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe
Q 020021          163 --GRPAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  239 (332)
Q Consensus       163 --~~~~~~~~~~-~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~  239 (332)
                        ........+. ..++.+..++.|++||++..+    ......++...+..+.++|++.++++++.|+.|++||..++.
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             eccccccccccccceeeeecccceeeeeeccccc----ceeeeeccccccccccccccceeeecccccceEEeeeccccc
Confidence              0011122222 344455568999999987542    123334455677889999999999999999999999999999


Q ss_pred             EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceE-EeCCCeeEEEeccce-EEE
Q 020021          240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVI-KWTPGSLMFVTGSSE-LSF  317 (332)
Q Consensus       240 ~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l-~~sp~~~~l~t~~~d-~~~  317 (332)
                      .+..+.   .|...+.+++|+  +++|++|+.||+|++||+.++....  ..|...+..+ .|+|+++++++++.+ +++
T Consensus       235 ~~~~~~---~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~d~~i~v  307 (355)
T d1nexb2         235 LMYTLQ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSGSENQFNI  307 (355)
T ss_dssp             EEEEEC---CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEEETTEEEE
T ss_pred             cccccc---cccccccccccc--cceeeeeecccccccccccccceec--ccccCCceEEEEEcCCCCEEEEEeCCEEEE
Confidence            887776   456777888885  5799999999999999998876543  3455555554 567888888887644 999


Q ss_pred             ecccccc
Q 020021          318 WIPDLSK  324 (332)
Q Consensus       318 w~~~~~~  324 (332)
                      |+....+
T Consensus       308 wd~~tg~  314 (355)
T d1nexb2         308 YNLRSGK  314 (355)
T ss_dssp             EETTTCC
T ss_pred             EECCCCC
Confidence            9976543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-33  Score=249.59  Aligned_cols=255  Identities=15%  Similarity=0.194  Sum_probs=198.5

Q ss_pred             hcccceeEeccCC-CcEEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeeeE--------EeeecccceeEEEEccCCCE
Q 020021           22 QSMEVGMSFRDYN-GRISSMDFHK--SSSYLVTASDDESIRLYDVTAATCLK--------TINSKKYGVDLVCFTSHPTT   90 (332)
Q Consensus        22 ~~~~~~~~l~~h~-~~I~~i~~s~--dg~~l~tgs~D~tv~iwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~   90 (332)
                      ........+.+|. ..|++++|+|  ++.+|+||+.|++|+|||+..+++..        .+..+..+|..++|++++..
T Consensus        50 ~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~  129 (325)
T d1pgua1          50 SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR  129 (325)
T ss_dssp             CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             CCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCc
Confidence            3445567788885 6799999998  56799999999999999987654332        23456667899999999999


Q ss_pred             EEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEE
Q 020021           91 VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY  169 (332)
Q Consensus        91 ~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~  169 (332)
                      +++++. +.+..+++|+..+++++..+.+|...|++++|+|++. .+++++.|+.+++||....+.......        
T Consensus       130 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~--------  200 (325)
T d1pgua1         130 LCVVGE-GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT--------  200 (325)
T ss_dssp             EEEEEC-CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS--------
T ss_pred             cceeec-cccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc--------
Confidence            887763 5578899999999999999999999999999999876 478999999999999876653322110        


Q ss_pred             cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEEccCCeEeEEeeecC
Q 020021          170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP  248 (332)
Q Consensus       170 ~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  248 (332)
                                                      ...+...+.+++|+|| +.++++++.|+.|++||..+++.+..+..  
T Consensus       201 --------------------------------~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~--  246 (325)
T d1pgua1         201 --------------------------------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED--  246 (325)
T ss_dssp             --------------------------------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB--
T ss_pred             --------------------------------ccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccc--
Confidence                                            0123346788999997 68899999999999999999998887764  


Q ss_pred             CCCCcceEEEEC---CCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCC--ceEEeCCCe-eEEEeccce--EEEecc
Q 020021          249 VSRNSTLEASFS---PEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP--PVIKWTPGS-LMFVTGSSE--LSFWIP  320 (332)
Q Consensus       249 ~~~~~~~~v~~s---pdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v--~~l~~sp~~-~~l~t~~~d--~~~w~~  320 (332)
                       |...+..+.|+   |||++|++++.|++|+|||+.+++.+..+..|...+  ..+++.+.+ .++++++.|  +++|+.
T Consensus       247 -~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         247 -DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             -TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             -cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence             33334334444   789999999999999999999999998887666543  445554433 367788766  888863

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.4e-33  Score=240.60  Aligned_cols=255  Identities=18%  Similarity=0.343  Sum_probs=216.4

Q ss_pred             eeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEE
Q 020021           13 SLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI   92 (332)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (332)
                      .+++|+  +.+.++.++|++|.+.|.+++|+|++.++++++.++++.+|+....+....+..+...+..+.+++++..++
T Consensus        40 ~i~iWd--~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (317)
T d1vyhc1          40 TIKVWD--YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV  117 (317)
T ss_dssp             CEEEEE--TTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEE
T ss_pred             eEEEEE--CCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEE
Confidence            366675  345678889999999999999999999999999999999999999888888888888899999999999988


Q ss_pred             EecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEE-
Q 020021           93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAY-  169 (332)
Q Consensus        93 ~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~-  169 (332)
                      +++.   |+.+++||+.+++.+..+.+|...+.+++|++++++|++++.|+.|++|+++++++...+.....  ....+ 
T Consensus       118 ~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  194 (317)
T d1vyhc1         118 SASR---DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA  194 (317)
T ss_dssp             EEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             eecc---CcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEe
Confidence            8764   88999999999999999999999999999999999999999999999999998877655532211  11111 


Q ss_pred             --------------------cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCe
Q 020021          170 --------------------DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH  229 (332)
Q Consensus       170 --------------------~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~  229 (332)
                                          .+...+++++.|+.|++||++...    ......++...+.+++++|+++++++++.||.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  270 (317)
T d1vyhc1         195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKT  270 (317)
T ss_dssp             CSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred             eccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc----EEEEEeCCCCCEEEEEECCCCCEEEEEECCCe
Confidence                                122345556678999999987532    23445567788999999999999999999999


Q ss_pred             EEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEE
Q 020021          230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS  279 (332)
Q Consensus       230 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd  279 (332)
                      |++||+.+++++.++.   .|...+++++|+|++++|+||+.||+|+|||
T Consensus       271 i~iwd~~~~~~~~~~~---~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         271 LRVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECCTTSCCCEEEE---CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999888876   4667899999999999999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=244.88  Aligned_cols=271  Identities=14%  Similarity=0.149  Sum_probs=203.3

Q ss_pred             cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (332)
Q Consensus        23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~  102 (332)
                      .-+++++|+||+++|++|+|+|    |+||+.|++|++||+.++.     ..|...|..+++.++. .+++++   +|++
T Consensus         2 ~~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s---~D~~   68 (287)
T d1pgua2           2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSIS---WDDT   68 (287)
T ss_dssp             EEEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEE---TTTE
T ss_pred             CcceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEe---eccc
Confidence            3467899999999999999987    9999999999999987643     4677788888888665 455543   5899


Q ss_pred             eEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC-
Q 020021          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG-  181 (332)
Q Consensus       103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  181 (332)
                      +++|++...+       +...+..+.+++++..+++++ ++.+.+|+..++.....+............+..++.++.+ 
T Consensus        69 v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  140 (287)
T d1pgua2          69 LKVNGITKHE-------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEG  140 (287)
T ss_dssp             EEETTEEEEE-------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTT
T ss_pred             cccccccccc-------cccceeeeeeccCCceEEEee-cccceeeeccceeeeeeccccceeeeeeccCcceeeecccc
Confidence            9999975422       334567788888887776654 5568889988888777766544333332233444444444 


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp  261 (332)
                      +.+++|++.....   .......+...+.+++|+|+|.++++++.||.|++||+.+++.+...  ...|...+.+++|+|
T Consensus       141 ~~v~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~~h~~~v~~~~~~p  215 (287)
T d1pgua2         141 NTIQVFKLSDLEV---SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR--WAFRTSKINAISWKP  215 (287)
T ss_dssp             SCEEEEETTEEEE---EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC--SCCCSSCEEEEEECC
T ss_pred             ceeeeeeccccce---eeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc--ccccccccceeeecc
Confidence            5799999864321   11111234457899999999999999999999999999988765432  124667788899987


Q ss_pred             C----------CCEEEEEcCCCcEEEEECCC-CceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021          262 E----------GMFVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP  320 (332)
Q Consensus       262 d----------g~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~  320 (332)
                      +          +.++++|+.|++|+|||+.+ .+.+..+.+|...|++++|+|+++ |+|++.|  +++|+.
T Consensus       216 ~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             CC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             cccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence            4          57999999999999999977 556777789999999999999975 6777776  888863

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-33  Score=253.54  Aligned_cols=276  Identities=14%  Similarity=0.156  Sum_probs=206.3

Q ss_pred             eeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeE--EeeecccceeEEEEccCCCE
Q 020021           13 SLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTT   90 (332)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~   90 (332)
                      .+.+|+.--..++....|++|.++|.+|+|+|++++|+||+.|++|+|||+.+++...  .+..|...+..++|+|++..
T Consensus        30 ~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  109 (371)
T d1k8kc_          30 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK  109 (371)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccccccc
Confidence            3556664445567788899999999999999999999999999999999998776544  44567778999999999999


Q ss_pred             EEEecCCCCCceeEEEEccCCce----EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee
Q 020021           91 VIYSSKNGWDESLRLLSLHDNKY----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  166 (332)
Q Consensus        91 ~~~~s~~g~d~~v~v~d~~~~~~----~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~  166 (332)
                      +++++.   |+++++|++.....    .....+|...|.+++|+|++++|++|+.|+++++||.............    
T Consensus       110 l~~~s~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~----  182 (371)
T d1k8kc_         110 FAVGSG---SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT----  182 (371)
T ss_dssp             EEEEET---TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB----
T ss_pred             ceeecc---cCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccc----
Confidence            998865   78999999877553    3345679999999999999999999999999999998654321110000    


Q ss_pred             EEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021          167 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                                         .|+....  .........++...+.+++|+|+|+++++++.|+.|++||+.++..+..+. 
T Consensus       183 -------------------~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-  240 (371)
T d1k8kc_         183 -------------------PWGSKMP--FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-  240 (371)
T ss_dssp             -------------------TTBSCCC--TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-
T ss_pred             -------------------ccccccc--ceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee-
Confidence                               0000000  001122333455678999999999999999999999999999998887776 


Q ss_pred             cCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-------------------------------------
Q 020021          247 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-------------------------------------  289 (332)
Q Consensus       247 ~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-------------------------------------  289 (332)
                        .+..++.+++|+||+++|++|+ |+.+++|..........+                                     
T Consensus       241 --~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (371)
T d1k8kc_         241 --SETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG  317 (371)
T ss_dssp             --CSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred             --cccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccccc
Confidence              4567888999999999998776 677777654332111000                                     


Q ss_pred             ----cCCCCCCceEEeCCCe----eEEEeccce--EEEecc
Q 020021          290 ----MSFDTEPPVIKWTPGS----LMFVTGSSE--LSFWIP  320 (332)
Q Consensus       290 ----~~~~~~v~~l~~sp~~----~~l~t~~~d--~~~w~~  320 (332)
                          ..|...|+++++.|.+    ..++|++.|  +++|+.
T Consensus       318 ~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         318 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             ceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence                1377788899987743    468899887  777765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-32  Score=243.94  Aligned_cols=246  Identities=16%  Similarity=0.229  Sum_probs=196.5

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      ..+|...|.+|+|+|++++|++|+.|++|++||..+++.+..+.+|...|..+++++++..++.++.   ++.+++||+.
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~---~~~i~~~d~~  193 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG---DRTVRIWDLR  193 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETT
T ss_pred             ccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccccccccc---ceeeeeeecc
Confidence            4578888999999999999999999999999999999999999999999999999999998888764   7899999999


Q ss_pred             CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec---------CceeEEEcCCCeEE-EEE
Q 020021          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---------GRPAAAYDDQGLVF-AVA  179 (332)
Q Consensus       110 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~  179 (332)
                      +.........+...+..+.+.+++++|++++.|+.|++||.+++.....+...         ......+++++..+ +++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  273 (388)
T d1erja_         194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  273 (388)
T ss_dssp             TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            98887777766665555555568899999999999999999988776555321         12345667766544 455


Q ss_pred             eCCEEEEEECccCCCCC--------eeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC
Q 020021          180 FGGYIRMFDARKYEKGP--------FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  251 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~--------~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  251 (332)
                      .|+.|++||++......        ........+...+.+++|+|+|+++++++.||.|++||+.+++++.++.   .|.
T Consensus       274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~---~H~  350 (388)
T d1erja_         274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ---GHR  350 (388)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE---CCS
T ss_pred             CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe---CCC
Confidence            68999999987543211        1122333456678999999999999999999999999999999998887   456


Q ss_pred             CcceEEE------ECCCCCEEEEEcCCCcEEEEECC
Q 020021          252 NSTLEAS------FSPEGMFVISGSGDGSVYAWSVR  281 (332)
Q Consensus       252 ~~~~~v~------~spdg~~l~sgs~Dg~i~vWd~~  281 (332)
                      ..+..++      |+||+++|||||.||+|+||+++
T Consensus       351 ~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            7777765      57899999999999999999984

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-33  Score=253.03  Aligned_cols=284  Identities=13%  Similarity=0.164  Sum_probs=200.1

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCee------eEEeeecccceeEEE----EccCCCEEEEecC
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC------LKTINSKKYGVDLVC----FTSHPTTVIYSSK   96 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~------~~~~~~~~~~v~~~~----~~~~~~~~~~~s~   96 (332)
                      .-..++|.+.|.+|++++  ++++|+|.|++|||||..+.+.      ......+..++..+.    ....+......+.
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            345789999999999874  6999999999999999865432      111122322222111    1122222111111


Q ss_pred             CCCCceeEEEEccCCceEEEe----------ecccccEEEEEecCC-----CCeEEEeeCCCcEEEEeCCCce-------
Q 020021           97 NGWDESLRLLSLHDNKYLRYF----------KGHHDRVVSLSLCSS-----KDCFISGSLDRTVLLWDQRAEK-------  154 (332)
Q Consensus        97 ~g~d~~v~v~d~~~~~~~~~~----------~~h~~~V~~v~~~~~-----~~~l~s~s~Dg~i~iWd~~~~~-------  154 (332)
                      .+.|+.+++|++........+          ..+...+..+++.++     +.++++++.||++++||+....       
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            245899999997654321111          235566778888765     3589999999999999974221       


Q ss_pred             -----EEE---EEEec-----CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEE----EecCCCCCceeEEEcCC
Q 020021          155 -----CQG---LLRVQ-----GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF----SVGGDISDANVVKFSND  217 (332)
Q Consensus       155 -----~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~----~~~~~~~~v~~v~~s~d  217 (332)
                           ...   .....     ...+..+++++.+++++.|+.|++||++..+.  ...+    .+.+|...|++++||||
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~--~~~~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRP--LYNFESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEE--EEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccccc--ccccccccccccccceEEEcccccc
Confidence                 000   11000     12346677888777777899999999875431  1111    23457778999999999


Q ss_pred             CCEEEEEcCCC---eEEEEEccCCeEeEEeeec----------CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 020021          218 GRLMLLTTMEG---HIHVLDSFRGTLLSTYNVK----------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       218 g~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~----------~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~  284 (332)
                      |++|++++.|+   .|++||+.+++.+..+...          ..|...|.+++|+||+++|+|||.|++|+|||+.+++
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            99999999887   4999999999888776421          2467889999999999999999999999999999999


Q ss_pred             eEEEecCCCCCCc----eEEeCCCeeEEEeccce
Q 020021          285 EVASWMSFDTEPP----VIKWTPGSLMFVTGSSE  314 (332)
Q Consensus       285 ~~~~~~~~~~~v~----~l~~sp~~~~l~t~~~d  314 (332)
                      ++.++.+|...|.    .++|+|++..+++++..
T Consensus       323 ~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~  356 (393)
T d1sq9a_         323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF  356 (393)
T ss_dssp             EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEE
T ss_pred             EEEEECCcCCcccCCccEEEECCCCCEEEEcccc
Confidence            9999999988775    58899999988877654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-31  Score=226.04  Aligned_cols=274  Identities=14%  Similarity=0.263  Sum_probs=206.1

Q ss_pred             ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      ++.++.+.+|...|+|++|  ||++||||+.|++|+|||+.++++++++.+|...|..++|  ++..+++++.   |+.+
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~---D~~i   77 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS---DSTV   77 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEET---TSCE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccc---cccc
Confidence            4455667889999998765  6899999999999999999999999999999998887665  6778887754   8899


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE---ecCceeEEE-cCCCeEEEEE
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAY-DDQGLVFAVA  179 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~  179 (332)
                      ++|++..+........+......  +.+....++++..++.+++||...........   .+....... ......++.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s  155 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAVLH--LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS  155 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCEEE--EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred             ccccccccccccccccccccccc--ccccccceeecccccceeEeeccccccccccccccccccccccceeccccccccc
Confidence            99999998877766665554443  44566789999999999999987655432221   111222222 2344566677


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~  259 (332)
                      .|+.|++||.+..+.    ...+.++...+..  +++++.++++++.||.|++||+.+++.+..+.   .+...+  ..+
T Consensus       156 ~d~~i~~~d~~~~~~----~~~~~~~~~~v~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v--~~~  224 (293)
T d1p22a2         156 GDRTIKVWNTSTCEF----VRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELV--RCI  224 (293)
T ss_dssp             TTSEEEEEETTTCCE----EEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCE--EEE
T ss_pred             CCCceeeecCCCCcE----EEEEccccccccc--ccCCCCeEEEecCCCEEEEEecccceeeeeec---ccceee--eec
Confidence            899999999976431    2233344444444  45567889999999999999999988877664   233333  357


Q ss_pred             CCCCCEEEEEcCCCcEEEEECCC---------CceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021          260 SPEGMFVISGSGDGSVYAWSVRS---------GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI  319 (332)
Q Consensus       260 spdg~~l~sgs~Dg~i~vWd~~~---------~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~  319 (332)
                      ++++.+|++|+.||.|++||+.+         ...+..+..|...|++++|+  +.+|+|++.|  +++|+
T Consensus       225 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            78999999999999999999743         23567788999999999995  4589999988  77775

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-31  Score=234.24  Aligned_cols=290  Identities=17%  Similarity=0.312  Sum_probs=213.4

Q ss_pred             eeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccc--eeEEEEccCCCE
Q 020021           13 SLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYG--VDLVCFTSHPTT   90 (332)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~   90 (332)
                      ++++|+-  .+.++.++|.+|+++|.+|+|+|+ ++|+||+.|++|++|+....++..........  .....+.+++..
T Consensus        34 ~i~vWd~--~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (355)
T d1nexb2          34 MIRVYDS--INKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY  110 (355)
T ss_dssp             EEEEEET--TTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             eEEEEEC--CCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccce
Confidence            3677763  456788999999999999999985 58999999999999999998887666544332  344556677777


Q ss_pred             EEEecCCCCCceeEEEEccCCceE-----------------------EEeecccccEEEEEecCCCCeEEEeeCCCcEEE
Q 020021           91 VIYSSKNGWDESLRLLSLHDNKYL-----------------------RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL  147 (332)
Q Consensus        91 ~~~~s~~g~d~~v~v~d~~~~~~~-----------------------~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~i  147 (332)
                      ++.++.   |+.+++||+......                       .....|...+..  +.++++.+++++.|+.|++
T Consensus       111 ~~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~  185 (355)
T d1nexb2         111 IVTGSR---DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIV  185 (355)
T ss_dssp             EEEEET---TSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEE
T ss_pred             eeeecC---CCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc--cccccceeeeecccceeee
Confidence            777764   889999998765432                       222334444443  3456789999999999999


Q ss_pred             EeCCCceEEEEEEecC--ceeEEEcCCC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE
Q 020021          148 WDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT  224 (332)
Q Consensus       148 Wd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~  224 (332)
                      ||+++++.........  .....+++.+ .++.++.|+.|++||.+...    ......+|...+.+++++  +++++++
T Consensus       186 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~~--~~~l~~~  259 (355)
T d1nexb2         186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLS--DKFLVSA  259 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC----EEEEECCCSSCCCEEEEC--SSEEEEE
T ss_pred             eecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc----cccccccccccccccccc--cceeeee
Confidence            9999888766554332  2334555555 45556678999999987542    234455777788888886  4789999


Q ss_pred             cCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE-EecCCCCCCceEEeCC
Q 020021          225 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTP  303 (332)
Q Consensus       225 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~-~~~~~~~~v~~l~~sp  303 (332)
                      +.||.|++||+.++.......    +.......+++|+++++++|+ ||+|+|||+++++.+. .+..|..+|.+++|+|
T Consensus       260 ~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~  334 (355)
T d1nexb2         260 AADGSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG  334 (355)
T ss_dssp             CTTSEEEEEETTTCCEEEEEE----CTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET
T ss_pred             ecccccccccccccceecccc----cCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcC
Confidence            999999999998876654432    122222346788888887775 8999999999999885 4678888999999999


Q ss_pred             CeeEEEeccce--EEEecccc
Q 020021          304 GSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       304 ~~~~l~t~~~d--~~~w~~~~  322 (332)
                      +. ++++++.|  +.+|.|+.
T Consensus       335 ~~-~~~~~s~dg~~~l~~~df  354 (355)
T d1nexb2         335 KT-LVAAVEKDGQSFLEILDF  354 (355)
T ss_dssp             TE-EEEEEESSSCEEEEEEEC
T ss_pred             Ce-EEEEEECCCcEEEEEEeC
Confidence            84 67777766  67888764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.8e-31  Score=227.43  Aligned_cols=244  Identities=15%  Similarity=0.241  Sum_probs=194.7

Q ss_pred             CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEee-cccccEEEEEecCCCCeEEEeeCCCc
Q 020021           66 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRT  144 (332)
Q Consensus        66 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~  144 (332)
                      |+..+.+.+|..+|.+++|+|+++.+++++.   |++|++||+++++.++.+. +|...|++++|+|+++ +++++.|+.
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~---Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~   77 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADA---EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDH   77 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcC---CCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceee
Confidence            5677889999999999999999999988764   8899999999999888874 7999999999999986 567788999


Q ss_pred             EEEEeCCCceEEE---EE-Ee-cCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC
Q 020021          145 VLLWDQRAEKCQG---LL-RV-QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (332)
Q Consensus       145 i~iWd~~~~~~~~---~~-~~-~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  219 (332)
                      +++|+........   .. .. .......+.+++.+++++.++.+++|+.....     ...   ......+++|+|+++
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~-----~~~---~~~~~~~~~~s~~~~  149 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT-----EVP---ISYNSSCVALSNDKQ  149 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE-----EEE---CSSCEEEEEECTTSC
T ss_pred             EEEeccCCcccccccccccccccccccccccccccccccccccccccccccccc-----ccc---ccccccccccccccc
Confidence            9999975432211   11 11 12234566778888888889999999864321     111   123567899999999


Q ss_pred             EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE---EecCCCCCC
Q 020021          220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA---SWMSFDTEP  296 (332)
Q Consensus       220 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~---~~~~~~~~v  296 (332)
                      ++++++.||.|++||+.+++.......  .|...+.+++|+|++++|++++.|+.|++||+.++..+.   .+..|...|
T Consensus       150 ~l~~g~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         150 FVAVGGQDSKVHVYKLSGASVSEVKTI--VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV  227 (299)
T ss_dssp             EEEEEETTSEEEEEEEETTEEEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             ccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999988775543222  356788999999999999999999999999998876543   456788899


Q ss_pred             ceEEeCCCeeEEEeccce--EEEeccccc
Q 020021          297 PVIKWTPGSLMFVTGSSE--LSFWIPDLS  323 (332)
Q Consensus       297 ~~l~~sp~~~~l~t~~~d--~~~w~~~~~  323 (332)
                      .+++|+|++.+|++++.|  +++|++...
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             ccccccccccceEEEcCCCEEEEEECCCC
Confidence            999999999999999887  889987543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=4.2e-29  Score=219.40  Aligned_cols=256  Identities=13%  Similarity=0.220  Sum_probs=203.3

Q ss_pred             CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcE
Q 020021           66 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV  145 (332)
Q Consensus        66 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i  145 (332)
                      .+..+++.+|...|.+++|+|++..+++++.   |++|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~---Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i  121 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQ---DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEET---TTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEEC---CCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccccee
Confidence            3456789999999999999999999998864   8899999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCceEE----EEEEecC--ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC
Q 020021          146 LLWDQRAEKCQ----GLLRVQG--RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (332)
Q Consensus       146 ~iWd~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  219 (332)
                      ++|+.......    ..+..+.  ...........+.....+.....++.....    ...........+....+.+.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  197 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ----QTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTE----EEEEEECCSSCEEEEEECTTSS
T ss_pred             ecccccccccccccceeccccccccccccccccccccccccccccccccccccc----ccccccccceeEeeeccccccc
Confidence            99997654321    1221111  112222334455556667788888765421    1222223445678889999999


Q ss_pred             EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe--cCCCCCCc
Q 020021          220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW--MSFDTEPP  297 (332)
Q Consensus       220 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~--~~~~~~v~  297 (332)
                      ++++++.|+.|++||+.+++.+..+.   .|...+.+++|+|++++|++|+.||.|++||+...+.+..+  ..+...+.
T Consensus       198 ~~~~~~~d~~v~i~d~~~~~~~~~~~---~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~  274 (340)
T d1tbga_         198 LFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             eeEEeecCceEEEEECCCCcEEEEEe---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceE
Confidence            99999999999999999999888776   46678899999999999999999999999999988876654  45566789


Q ss_pred             eEEeCCCeeEEEeccce--EEEecc-ccccccccccc
Q 020021          298 VIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAYVGR  331 (332)
Q Consensus       298 ~l~~sp~~~~l~t~~~d--~~~w~~-~~~~~~~~~~~  331 (332)
                      +++|+|++++|++|+.|  +++|+. ..+.+..+.||
T Consensus       275 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H  311 (340)
T d1tbga_         275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH  311 (340)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC
Confidence            99999999999999877  899986 45556666665

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1e-28  Score=218.30  Aligned_cols=241  Identities=11%  Similarity=0.091  Sum_probs=189.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCC-cEEEEEcCCC--eeeEEeeecc-cceeEEEEccC--CCEEEEecCCCCCceeEEEEcc
Q 020021           36 RISSMDFHKSSSYLVTASDDE-SIRLYDVTAA--TCLKTINSKK-YGVDLVCFTSH--PTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~-tv~iwd~~~~--~~~~~~~~~~-~~v~~~~~~~~--~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      .+++++|+|+++.|+.++.+. .++.||....  ..+..+.+|. ..|..++|+|.  +..+++++   .|++|++||+.
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs---~Dg~i~iWd~~   95 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD---ESGKVIVWGWT   95 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE---TTSEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEe---CCCCEEEeeec
Confidence            457889999999999887664 4677776543  3456677764 57999999984  44566664   38899999987


Q ss_pred             CCceE--------EEeecccccEEEEEecCCCCeEEEee--CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEE
Q 020021          110 DNKYL--------RYFKGHHDRVVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  179 (332)
Q Consensus       110 ~~~~~--------~~~~~h~~~V~~v~~~~~~~~l~s~s--~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (332)
                      .++..        ..+..|.++|.+++|+++++++++++  .|+.+++|+..++++...+                    
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  155 (325)
T d1pgua1          96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV--------------------  155 (325)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC--------------------
T ss_pred             CCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee--------------------
Confidence            65421        23567889999999999999888775  4778999998776543222                    


Q ss_pred             eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE-EEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (332)
Q Consensus       180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~  258 (332)
                                             .+|...+.+++|+|++.+ +++++.|+.+++||...++..........+...+.+++
T Consensus       156 -----------------------~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         156 -----------------------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             -----------------------CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             -----------------------eecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence                                   134456788999999875 67789999999999988877766665556677889999


Q ss_pred             ECCC-CCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeC---CCeeEEEeccce--EEEecccc
Q 020021          259 FSPE-GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT---PGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       259 ~spd-g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~s---p~~~~l~t~~~d--~~~w~~~~  322 (332)
                      |+|| +++|++|+.||.|++||+.+++.+..+..|..++..+.|+   |++++|++++.|  +++|+...
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             eccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence            9997 6899999999999999999999999999998888877776   788999999877  88898754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-27  Score=209.76  Aligned_cols=256  Identities=15%  Similarity=0.290  Sum_probs=186.6

Q ss_pred             eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeeccccee-------------
Q 020021           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD-------------   80 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~-------------   80 (332)
                      +++|+  +.+.++.++|.+|.+.|.+++|+|  ++|++|+.|+++++|+............+...+.             
T Consensus        39 i~vWd--~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (342)
T d2ovrb2          39 LKVWS--AVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS  114 (342)
T ss_dssp             EEEEE--TTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred             EEEEE--CCCCCEEEEEeCCCCCEEEEEeCC--CccccceecccccccccccccceecccccceeEeeeecccccccccc
Confidence            67776  356778899999999999999987  4999999999999999876654432222111111             


Q ss_pred             -------------------------EEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCe
Q 020021           81 -------------------------LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  135 (332)
Q Consensus        81 -------------------------~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~  135 (332)
                                               ..........++.++   .|+.+++||....+.+..+.+|...+..+.+  ++.+
T Consensus       115 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~  189 (342)
T d2ovrb2         115 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA---YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIH  189 (342)
T ss_dssp             TTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE---TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSE
T ss_pred             cceeEEEeecccccceeeeecccccceeeccccceeeeec---CCCeEEEeecccceeeEEEcCcccccccccC--CCCE
Confidence                                     111222333344443   3789999999999999999999888776654  6789


Q ss_pred             EEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEc-CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCC-CceeEE
Q 020021          136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS-DANVVK  213 (332)
Q Consensus       136 l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~v~  213 (332)
                      |++++.||+|++||++.+++...+..+......+. .+..+++++.|+.|++||+...+.  .  .....+.. .....+
T Consensus       190 l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~--~~~~~~~~~~~~~~~  265 (342)
T d2ovrb2         190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC--L--QTLQGPNKHQSAVTC  265 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE--E--EEECSTTSCSSCEEE
T ss_pred             EEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccc--c--ccccccceeeeceee
Confidence            99999999999999999888776654443333333 234666667789999999876432  1  11111111 223345


Q ss_pred             EcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec--CCCCCcceEEEECCCCCEEEEEcCCCc----EEEEECCC
Q 020021          214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK--PVSRNSTLEASFSPEGMFVISGSGDGS----VYAWSVRS  282 (332)
Q Consensus       214 ~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~v~~spdg~~l~sgs~Dg~----i~vWd~~~  282 (332)
                      ++++++++++++.||+|++||+.+++.+.++...  ..+...+.+++|+|++.+||+|+.||+    |++||+..
T Consensus       266 ~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         266 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             cccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            5566789999999999999999999998877532  235567899999999999999999996    99999863

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4e-27  Score=213.18  Aligned_cols=255  Identities=13%  Similarity=0.127  Sum_probs=173.8

Q ss_pred             EeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce------EEEeecccccEE------EEEecC-CCCeEE
Q 020021           71 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY------LRYFKGHHDRVV------SLSLCS-SKDCFI  137 (332)
Q Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~------~~~~~~h~~~V~------~v~~~~-~~~~l~  137 (332)
                      ..++|...|..+++.  ++++++++.   |++|++||..+...      ......|...+.      .+.... ++..++
T Consensus         9 ~~~~H~~~I~~v~~~--~~~l~S~S~---D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           9 AGKAHDADIFSVSAC--NSFTVSCSG---DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             ESSCSSSCEEEEEEC--SSEEEEEET---TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             cCCcccCccEEEEEe--CCEEEEEEC---CCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            346888889888875  467887764   89999999765431      222223433322      222222 234788


Q ss_pred             EeeCCCcEEEEeCCCceEEEEE---Eec--------C-ceeEEEcC------CCeEEEEEeCCEEEEEECccCCC-----
Q 020021          138 SGSLDRTVLLWDQRAEKCQGLL---RVQ--------G-RPAAAYDD------QGLVFAVAFGGYIRMFDARKYEK-----  194 (332)
Q Consensus       138 s~s~Dg~i~iWd~~~~~~~~~~---~~~--------~-~~~~~~~~------~~~~~~~~~~~~i~vwd~~~~~~-----  194 (332)
                      +++.||+|++|++........+   ...        . .....+..      ...+++++.|+.+++|++.....     
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            9999999999986533211111   100        0 01112221      12345566789999999753211     


Q ss_pred             ----CC-eeEE----EecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec---CCCCCcceEEEECCC
Q 020021          195 ----GP-FDIF----SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK---PVSRNSTLEASFSPE  262 (332)
Q Consensus       195 ----~~-~~~~----~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~v~~spd  262 (332)
                          .. ....    ....+...+.+++|+||| ++++++.||+|++||+.+++.+..+...   ..|..+|.+++|+||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence                01 1111    111222357889999998 7899999999999999999887766532   246788999999999


Q ss_pred             CCEEEEEcCCCc---EEEEECCCCceEEEec-------------CCCCCCceEEeCCCeeEEEeccce--EEEeccc-cc
Q 020021          263 GMFVISGSGDGS---VYAWSVRSGKEVASWM-------------SFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD-LS  323 (332)
Q Consensus       263 g~~l~sgs~Dg~---i~vWd~~~~~~~~~~~-------------~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~-~~  323 (332)
                      |++|++|+.|++   |++||+.+++.+.++.             +|...|++|+|+||+++|+|++.|  +++|+.+ .+
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            999999999985   9999999998877663             699999999999999999999988  8889874 44


Q ss_pred             cccccccc
Q 020021          324 KLGAYVGR  331 (332)
Q Consensus       324 ~~~~~~~~  331 (332)
                      .+..++||
T Consensus       323 ~~~~l~gH  330 (393)
T d1sq9a_         323 RITTLNMH  330 (393)
T ss_dssp             EEEEEECC
T ss_pred             EEEEECCc
Confidence            45555665

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.2e-26  Score=199.00  Aligned_cols=253  Identities=11%  Similarity=0.089  Sum_probs=181.4

Q ss_pred             eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce---EEEeecccccEEEEEecCC-CCeEEEeeCC
Q 020021           67 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSS-KDCFISGSLD  142 (332)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~---~~~~~~h~~~V~~v~~~~~-~~~l~s~s~D  142 (332)
                      +.++..++|...|..++|+|+++.+++++.   |++|++||+..+..   +....+|.++|.+++|+|+ +.+|+||+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~---Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSW---DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEET---TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEEC---CCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            345666789999999999999999998864   89999999977553   2333479999999999986 4589999999


Q ss_pred             CcEEEEeCCCceEEEEEEecCc---ee-EEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCC--CCCceeEEEcC
Q 020021          143 RTVLLWDQRAEKCQGLLRVQGR---PA-AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD--ISDANVVKFSN  216 (332)
Q Consensus       143 g~i~iWd~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~v~~s~  216 (332)
                      ++|++|++..............   .. ........+++++.++.+++||++..............+  ........+.+
T Consensus        79 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence            9999999987665444322211   12 233345667777789999999987654333322222222  12345667888


Q ss_pred             CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE-ECCCCCEEEEEcCCCcEEEEECCCCceEE------E-
Q 020021          217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS-FSPEGMFVISGSGDGSVYAWSVRSGKEVA------S-  288 (332)
Q Consensus       217 dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~-~spdg~~l~sgs~Dg~i~vWd~~~~~~~~------~-  288 (332)
                      ++..+++++.|+.|++||+..++..................+ +++++..+++++.||.+.+|++.......      . 
T Consensus       159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~  238 (342)
T d1yfqa_         159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence            999999999999999999987654433322222333344444 45578899999999999999986533211      1 


Q ss_pred             --------ecCCCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          289 --------WMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       289 --------~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                              ...|...+++|+|+|++.+|+||+.|  +++|+.+.
T Consensus       239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC
Confidence                    12455667899999999999999988  88998754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.2e-26  Score=205.60  Aligned_cols=270  Identities=11%  Similarity=0.113  Sum_probs=196.5

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEe
Q 020021           39 SMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (332)
Q Consensus        39 ~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~  117 (332)
                      +-.||| ||+++|+++. +.|.+||+.++..++.  .|...|..++|+|+++.+++++... +..+++||+++++. ..+
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~-g~~v~v~d~~~~~~-~~~   81 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTRE-GDFLGIYDYRTGKA-EKF   81 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETT-EEEEEEEETTTCCE-EEC
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCC-CCEEEEEECCCCcE-EEe
Confidence            457999 9999998874 6899999998887764  5777899999999999988765421 35799999988764 467


Q ss_pred             ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEEEEEe-----------CCEE
Q 020021          118 KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF-----------GGYI  184 (332)
Q Consensus       118 ~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------~~~i  184 (332)
                      .+|...|.+++|+|++++|++++.|+.+++|+..++++...+....  .....+++++..++.+.           ++.+
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence            8899999999999999999999999999999999988777665443  23567788887665432           2468


Q ss_pred             EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEe-------EEeeecC---------
Q 020021          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL-------STYNVKP---------  248 (332)
Q Consensus       185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~---------  248 (332)
                      ++||+...+     ......+...+..++++|||+.|++++.++.+++||.......       .......         
T Consensus       162 ~v~d~~~~~-----~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  236 (360)
T d1k32a3         162 HVYDMEGRK-----IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV  236 (360)
T ss_dssp             EEEETTTTE-----EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred             eeeccccCc-----eeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceEC
Confidence            999987532     1222233456678899999999999999999999986543221       1110000         


Q ss_pred             ------------------------CCCCcceEEEECC-------------CCCEEEEEcCCCcEEEEECCCCceEEEecC
Q 020021          249 ------------------------VSRNSTLEASFSP-------------EGMFVISGSGDGSVYAWSVRSGKEVASWMS  291 (332)
Q Consensus       249 ------------------------~~~~~~~~v~~sp-------------dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~  291 (332)
                                              ........+...+             ++.++++++.++.|++||+.+++. ..   
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~---  312 (360)
T d1k32a3         237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-TE---  312 (360)
T ss_dssp             CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE-EE---
T ss_pred             CCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE-EE---
Confidence                                    0000111222222             233566777889999999988764 32   


Q ss_pred             CCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021          292 FDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL  322 (332)
Q Consensus       292 ~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~  322 (332)
                      |...+..++|||||++|++++.|  +++|+.+.
T Consensus       313 ~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~  345 (360)
T d1k32a3         313 VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK  345 (360)
T ss_dssp             EEEEEEEEEECTTSCEEEEEETTSCEEEEESSC
T ss_pred             ecCCcCEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            33458899999999999998877  77776543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=1e-24  Score=199.49  Aligned_cols=278  Identities=12%  Similarity=0.057  Sum_probs=190.7

Q ss_pred             ECCCC--CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEE---
Q 020021           42 FHKSS--SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY---  116 (332)
Q Consensus        42 ~s~dg--~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~---  116 (332)
                      +++|.  -++++.+.|++|+|||+.+++++.++..+. .+..++|+|+|+.+++++.   |+++++||+++++....   
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~---d~~v~vwd~~t~~~~~~~~i  101 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGR---DARIDMIDLWAKEPTKVAEI  101 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCEEEEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeC---CCCEEEEEccCCceeEEEEE
Confidence            55543  356889999999999999999999998774 5889999999999887753   78999999998875432   


Q ss_pred             --eecccccEEEEEecCCCCeE-EEeeCCCcEEEEeCCCceEEEEEEecCc-------------eeEEEcCCCeEEEEEe
Q 020021          117 --FKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGR-------------PAAAYDDQGLVFAVAF  180 (332)
Q Consensus       117 --~~~h~~~V~~v~~~~~~~~l-~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~  180 (332)
                        ..+|.+.+.++.|+|||+++ +++..++++++||..++.+...+.....             ......+++..+....
T Consensus       102 ~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~  181 (426)
T d1hzua2         102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  181 (426)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec
Confidence              34788888899999999986 5556899999999999887766543221             1122233333332222


Q ss_pred             --CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc-CCCeEEEEEccCCeEeEEeee-----------
Q 020021          181 --GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNV-----------  246 (332)
Q Consensus       181 --~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-----------  246 (332)
                        .+.+.+++............   +.......+.|+|+|+++.++. .+..+.++|..+++.+.....           
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (426)
T d1hzua2         182 KETGKVLLVNYKDIDNLTVTSI---GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN  258 (426)
T ss_dssp             TTTTEEEEEECSSSSSCEEEEE---ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEE
T ss_pred             CCCCeEEEEEeccccceeeEEe---ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceee
Confidence              24555555443221111111   2223567789999998776654 556777888776665433210           


Q ss_pred             ----------------------------------------cCCCCCcceEEEECCCCCEEE-------EEcCCCcEEEEE
Q 020021          247 ----------------------------------------KPVSRNSTLEASFSPEGMFVI-------SGSGDGSVYAWS  279 (332)
Q Consensus       247 ----------------------------------------~~~~~~~~~~v~~spdg~~l~-------sgs~Dg~i~vWd  279 (332)
                                                              ...|...+..++|+||+++|+       +++.|++|+|||
T Consensus       259 ~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd  338 (426)
T d1hzua2         259 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  338 (426)
T ss_dssp             EEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred             eecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence                                                    002234466799999999999       467789999999


Q ss_pred             CCCCceEEEe---------cCCCCCCceEEeCCCeeEE-Eec----cce--EEEecccccccc
Q 020021          280 VRSGKEVASW---------MSFDTEPPVIKWTPGSLMF-VTG----SSE--LSFWIPDLSKLG  326 (332)
Q Consensus       280 ~~~~~~~~~~---------~~~~~~v~~l~~sp~~~~l-~t~----~~d--~~~w~~~~~~~~  326 (332)
                      +.+++.+.++         ..+...+.+++|||||+++ +++    +.+  +.+|+....++.
T Consensus       339 ~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         339 LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             TTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             CCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence            9998876544         2345567889999999755 442    223  888887665543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5e-24  Score=181.99  Aligned_cols=233  Identities=17%  Similarity=0.249  Sum_probs=176.4

Q ss_pred             EeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeC
Q 020021           71 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ  150 (332)
Q Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~  150 (332)
                      ....|..+|.+  ++++++.+++++.   |++|++||++++++++++.+|.+.|++++|  ++++|+||+.|++|++|++
T Consensus        10 ~~~~~~~~V~c--~~~d~~~l~sgs~---Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          10 CRSETSKGVYC--LQYDDQKIVSGLR---DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CCCSSCCCEEE--EECCSSEEEEEES---SSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             ccCCCCCCEEE--EEEcCCEEEEEeC---CCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence            33445556664  5668888888865   899999999999999999999999999887  5789999999999999999


Q ss_pred             CCceEEEEEEecCce-eEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCe
Q 020021          151 RAEKCQGLLRVQGRP-AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH  229 (332)
Q Consensus       151 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~  229 (332)
                      ..+............ .........++++..++.+++||...... .........+...+..+.+  ....+++++.|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~  159 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT  159 (293)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-CEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred             ccccccccccccccccccccccccceeecccccceeEeecccccc-cccccccccccccccccee--cccccccccCCCc
Confidence            888766555433322 23334456677777889999999876543 2223333444445554444  4567889999999


Q ss_pred             EEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEE
Q 020021          230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV  309 (332)
Q Consensus       230 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  309 (332)
                      |++||..+++.+..+..   +...+..+.  +++.++++++.||+|++||+.+.+.+.....+...+.  .+++++.+|+
T Consensus       160 i~~~d~~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~  232 (293)
T d1p22a2         160 IKVWNTSTCEFVRTLNG---HKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIV  232 (293)
T ss_dssp             EEEEETTTCCEEEEEEC---CSSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEEE
T ss_pred             eeeecCCCCcEEEEEcc---ccccccccc--CCCCeEEEecCCCEEEEEecccceeeeeecccceeee--eccccceEEE
Confidence            99999999998877763   334444444  4678999999999999999999999888888776654  4567788999


Q ss_pred             eccce--EEEecc
Q 020021          310 TGSSE--LSFWIP  320 (332)
Q Consensus       310 t~~~d--~~~w~~  320 (332)
                      +++.|  +++|+.
T Consensus       233 sg~~dg~i~iwd~  245 (293)
T d1p22a2         233 SGAYDGKIKVWDL  245 (293)
T ss_dssp             EEETTSCEEEEEH
T ss_pred             EEcCCCEEEEEEC
Confidence            98887  888875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=8.5e-26  Score=200.00  Aligned_cols=252  Identities=10%  Similarity=0.084  Sum_probs=184.0

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~--tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      +|...|.+++|+|||++|++++.|.  .|++||+.+++.. .+..|...+..++|+|+++.+++++.   ++.+++|++.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~---~~~~~~~~~~  115 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVAND---RFEIMTVDLE  115 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEET---TSEEEEEETT
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceecc---cccccccccc
Confidence            7999999999999999998877664  8999999987765 46677788999999999999998864   7899999999


Q ss_pred             CCceEEEeecccccEEEEEecCCCCeEEEe----------eCCCcEEEEeCCCceEEEEEEecC-ceeEEEcCCCeEE-E
Q 020021          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISG----------SLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVF-A  177 (332)
Q Consensus       110 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~----------s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~  177 (332)
                      +++....+..|...+.+++|+|+|++|+.+          ..++.+++||+.+++......... .....+++++..+ .
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  195 (360)
T d1k32a3         116 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY  195 (360)
T ss_dssp             TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             ccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEE
Confidence            999999999999999999999999999854          445679999999887654443322 2345677777544 4


Q ss_pred             EEeCCEEEEEECccCCCC---CeeEEE------------------------------------ecCCCCCceeEEEcCCC
Q 020021          178 VAFGGYIRMFDARKYEKG---PFDIFS------------------------------------VGGDISDANVVKFSNDG  218 (332)
Q Consensus       178 ~~~~~~i~vwd~~~~~~~---~~~~~~------------------------------------~~~~~~~v~~v~~s~dg  218 (332)
                      ++.++.+++||.......   ......                                    ..........+...+++
T Consensus       196 ~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (360)
T d1k32a3         196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS  275 (360)
T ss_dssp             EESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE
T ss_pred             EeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCC
Confidence            556788889985432100   000000                                    00000111223333333


Q ss_pred             C-------------EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021          219 R-------------LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE  285 (332)
Q Consensus       219 ~-------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~  285 (332)
                      .             +++.++.++.|++||+.+++... +      ...+..++|||||++|++++.||.|++||+.+++.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~------~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-V------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-E------EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             ceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE-e------cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence            2             33455567899999998876532 2      23467899999999999999999999999999888


Q ss_pred             EEEecCCCC
Q 020021          286 VASWMSFDT  294 (332)
Q Consensus       286 ~~~~~~~~~  294 (332)
                      ..++..+..
T Consensus       349 ~~~~~~d~~  357 (360)
T d1k32a3         349 ERTVETDKR  357 (360)
T ss_dssp             CEECCCCSS
T ss_pred             ceEEEeccc
Confidence            777655443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.9e-25  Score=192.60  Aligned_cols=239  Identities=17%  Similarity=0.204  Sum_probs=177.9

Q ss_pred             CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcE
Q 020021           66 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV  145 (332)
Q Consensus        66 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i  145 (332)
                      .+.++++.+|..+|.+++|++    +++++.   |++|++||+.++     ..+|...|.+++++++ ..++|++.|+++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~---Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v   69 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSY---DGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTL   69 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEET---TSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeC---CCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccc
Confidence            467889999999999999976    666654   899999998764     4689999999999865 468999999999


Q ss_pred             EEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc
Q 020021          146 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT  225 (332)
Q Consensus       146 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~  225 (332)
                      ++|++...+..     .........+++.++..+.++.+.+|+....+.  ......     .....++++++..+++++
T Consensus        70 ~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~v~~  137 (287)
T d1pgua2          70 KVNGITKHEFG-----SQPKVASANNDGFTAVLTNDDDLLILQSFTGDI--IKSVRL-----NSPGSAVSLSQNYVAVGL  137 (287)
T ss_dssp             EETTEEEEECS-----SCEEEEEECSSSEEEEEETTSEEEEEETTTCCE--EEEEEC-----SSCEEEEEECSSEEEEEE
T ss_pred             ccccccccccc-----cceeeeeeccCCceEEEeecccceeeeccceee--eeeccc-----cceeeeeeccCcceeeec
Confidence            99997543211     111234456677777788888999998765431  222221     223467888898888887


Q ss_pred             CCC-eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEE-ecCCCCCCceEEeCC
Q 020021          226 MEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTP  303 (332)
Q Consensus       226 ~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~-~~~~~~~v~~l~~sp  303 (332)
                      .++ .+++|++.........  ...+...+.+++|+|++.+|++|+.||.|++||+.+++.+.. +..|...|.+++|+|
T Consensus       138 ~~~~~v~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p  215 (287)
T d1pgua2         138 EEGNTIQVFKLSDLEVSFDL--KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP  215 (287)
T ss_dssp             TTTSCEEEEETTEEEEEEEC--SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred             cccceeeeeeccccceeeee--eeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecc
Confidence            765 7999998655444333  234556788999999999999999999999999998876553 578899999999987


Q ss_pred             C----------eeEEEeccce--EEEecccc--ccccccccc
Q 020021          304 G----------SLMFVTGSSE--LSFWIPDL--SKLGAYVGR  331 (332)
Q Consensus       304 ~----------~~~l~t~~~d--~~~w~~~~--~~~~~~~~~  331 (332)
                      +          +.++++|+.|  +++|+++.  ..+..+.||
T Consensus       216 ~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h  257 (287)
T d1pgua2         216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH  257 (287)
T ss_dssp             CC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS
T ss_pred             cccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC
Confidence            5          4589999887  88888643  233334444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.1e-24  Score=199.39  Aligned_cols=279  Identities=11%  Similarity=0.032  Sum_probs=181.5

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEe--e---ecccceeEEEEccCCCEEEEecC
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI--N---SKKYGVDLVCFTSHPTTVIYSSK   96 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~--~---~~~~~v~~~~~~~~~~~~~~~s~   96 (332)
                      .+.+..++|..|. .+.+|+|||||++|++++.|+++++||+.++++....  .   .|...+..++|+|+++.++.++ 
T Consensus        50 ~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~-  127 (426)
T d1hzua2          50 DSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA-  127 (426)
T ss_dssp             TTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEE-
T ss_pred             CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEee-
Confidence            4577888898885 4899999999999999999999999999988765433  2   3444455667889999887664 


Q ss_pred             CCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCC-----------CceEEE--EEEec
Q 020021           97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQR-----------AEKCQG--LLRVQ  162 (332)
Q Consensus        97 ~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~-----------~~~~~~--~~~~~  162 (332)
                       ..++++++||.+++..+..+.+|...+..+.+.+++. ..+..+.|+...+|...           ......  .+...
T Consensus       128 -~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  206 (426)
T d1hzua2         128 -YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA  206 (426)
T ss_dssp             -EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECC
T ss_pred             -cCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccC
Confidence             2478999999999999888887766655555555444 23344444444443322           211100  11000


Q ss_pred             -CceeEEEcCCCeEEEEEe--CCEEEEEECccC-----------------------------------------------
Q 020021          163 -GRPAAAYDDQGLVFAVAF--GGYIRMFDARKY-----------------------------------------------  192 (332)
Q Consensus       163 -~~~~~~~~~~~~~~~~~~--~~~i~vwd~~~~-----------------------------------------------  192 (332)
                       ......+++++.++.++.  +..+.+++....                                               
T Consensus       207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~  286 (426)
T d1hzua2         207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK  286 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred             CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence             111234444444333332  234444443211                                               


Q ss_pred             CCC---CeeEEEecCCCCCceeEEEcCCCCEEEE-------EcCCCeEEEEEccCCeEeEEee------ecCCCCCcceE
Q 020021          193 EKG---PFDIFSVGGDISDANVVKFSNDGRLMLL-------TTMEGHIHVLDSFRGTLLSTYN------VKPVSRNSTLE  256 (332)
Q Consensus       193 ~~~---~~~~~~~~~~~~~v~~v~~s~dg~~l~~-------~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~~~~  256 (332)
                      ...   ......+.+|...+..++|||||+++++       +..+++|++||+.+++...++.      ....+...+..
T Consensus       287 ~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~  366 (426)
T d1hzua2         287 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ  366 (426)
T ss_dssp             TCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEE
T ss_pred             ccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEE
Confidence            000   0112234455667889999999999995       4567899999999887655432      11234566788


Q ss_pred             EEECCCCCEEE-EE----cCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEE
Q 020021          257 ASFSPEGMFVI-SG----SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV  309 (332)
Q Consensus       257 v~~spdg~~l~-sg----s~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  309 (332)
                      ++|||||++++ ++    +.||.|+|||..+++....+..+.      .++|+|++.+
T Consensus       367 ~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         367 PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV  418 (426)
T ss_dssp             EEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred             EEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence            99999999774 32    568899999999999888777664      2468887754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1e-21  Score=169.14  Aligned_cols=262  Identities=15%  Similarity=0.145  Sum_probs=195.5

Q ss_pred             EEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEE
Q 020021           49 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLS  128 (332)
Q Consensus        49 l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~  128 (332)
                      .++++.|++|.+||+++++.++++.... .+..++|+|++++++.+..  .++.|++||+.+++.+..+..|.. +..+.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spdG~~l~v~~~--~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~   80 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANA--HSNDVSIIDTATNNVIATVPAGSS-PQGVA   80 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEG--GGTEEEEEETTTTEEEEEEECSSS-EEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCCCCEEEEEEC--CCCEEEEEECCCCceeeeeecccc-ccccc
Confidence            4678899999999999999999887653 4577899999998865532  378999999999999999887764 58899


Q ss_pred             ecCCCCe-EEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEE--eCCEEEEEECccCCCCCeeEEEecC
Q 020021          129 LCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVA--FGGYIRMFDARKYEKGPFDIFSVGG  204 (332)
Q Consensus       129 ~~~~~~~-l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~i~vwd~~~~~~~~~~~~~~~~  204 (332)
                      |+++++. ++++..++.+.+|+..+++....+..... ....+.+++..+..+  .+..+.+|+......    ..... 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-  155 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV----INTVS-  155 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEE-
T ss_pred             cccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccce----eeecc-
Confidence            9999885 45667788999999999888777765543 345667776554433  367899999865421    11111 


Q ss_pred             CCCCceeEEEcCCCCEEEEEcC-CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC---CCcEEEEEC
Q 020021          205 DISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DGSVYAWSV  280 (332)
Q Consensus       205 ~~~~v~~v~~s~dg~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~---Dg~i~vWd~  280 (332)
                      .......++++|++..++++.. ++.+.+|+....+.......    ......++|++++++++.++.   +++|++||+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~  231 (301)
T d1l0qa2         156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (301)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             cCCCceEEEeeccccceeeecccccccccccccceeeeecccc----cCCcceeeccccccccccccccceeeeeeeeec
Confidence            2234678899999988777655 46788888777776655542    234557899999998876643   468999999


Q ss_pred             CCCceEEEecCCCCCCceEEeCCCeeEE-Eeccce--EEEecccccc
Q 020021          281 RSGKEVASWMSFDTEPPVIKWTPGSLMF-VTGSSE--LSFWIPDLSK  324 (332)
Q Consensus       281 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~t~~~d--~~~w~~~~~~  324 (332)
                      .+++.+..+..+ ..+..++|+|||++| ++++.+  +.+|++...+
T Consensus       232 ~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         232 GTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             TTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            999988877554 457899999999865 676544  8889875543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1.6e-21  Score=167.94  Aligned_cols=255  Identities=13%  Similarity=0.132  Sum_probs=191.6

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d  100 (332)
                      .+.++.++++.. +.+..++|+|||++| ++++.|++|++||+.++++++++..+. .+..+++++++..++.+..  .+
T Consensus        20 ~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~   95 (301)
T d1l0qa2          20 TSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNM--AS   95 (301)
T ss_dssp             TTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEET--TT
T ss_pred             CCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccccccccccc--cc
Confidence            456777777654 346799999999987 577889999999999999999887765 4577899999988776653  26


Q ss_pred             ceeEEEEccCCceEEEeecccccEEEEEecCCCCeE-EEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEE
Q 020021          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAV  178 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l-~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  178 (332)
                      ..+.+|+..+++....+..+ .....+.|+|+++.+ +++..|+.+.+|+..+......+..... ....+.+++..+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (301)
T d1l0qa2          96 STLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYV  174 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEE
T ss_pred             ceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceee
Confidence            78999999999888877755 456788999999876 5666788999999999888776655433 34456666554444


Q ss_pred             E-e-CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc---CCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021          179 A-F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (332)
Q Consensus       179 ~-~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (332)
                      + . .+.+.+|+......  .....   .......++++++|..++.+.   .++.|++||..+++.+..+..    ...
T Consensus       175 ~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~----~~~  245 (301)
T d1l0qa2         175 ANFDSMSISVIDTVTNSV--IDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV----GPD  245 (301)
T ss_dssp             EETTTTEEEEEETTTTEE--EEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC----CSS
T ss_pred             ecccccccccccccceee--eeccc---ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC----CCC
Confidence            4 3 36777777654321  11111   123456789999999876654   346899999999998877653    234


Q ss_pred             ceEEEECCCCCEE-EEEcCCCcEEEEECCCCceEEEec
Q 020021          254 TLEASFSPEGMFV-ISGSGDGSVYAWSVRSGKEVASWM  290 (332)
Q Consensus       254 ~~~v~~spdg~~l-~sgs~Dg~i~vWd~~~~~~~~~~~  290 (332)
                      +..++|||||++| ++++.|++|++||+.+++.+.++.
T Consensus       246 ~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         246 PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            6789999999987 578889999999999999888764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=1.9e-22  Score=184.87  Aligned_cols=277  Identities=12%  Similarity=0.044  Sum_probs=189.2

Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce-----EEEe
Q 020021           43 HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-----LRYF  117 (332)
Q Consensus        43 s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~-----~~~~  117 (332)
                      ++++-++++.+.|++|.|||..+++++..+..+. .+..++|+|+++++++++.   |+++++||+.+++.     +...
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~---dg~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCCEEEEEECC
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcC---CCCEEEEEeeCCCceEEEEEecC
Confidence            4444456999999999999999999999998774 6889999999999988754   78999999988763     2333


Q ss_pred             ecccccEEEEEecCCCCeE-EEeeCCCcEEEEeCCCceEEEEEEecC-------------ceeEEEcCCCeEEEEE--eC
Q 020021          118 KGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQG-------------RPAAAYDDQGLVFAVA--FG  181 (332)
Q Consensus       118 ~~h~~~V~~v~~~~~~~~l-~s~s~Dg~i~iWd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~  181 (332)
                      .+|.+.+.+..|+|||++| ++++.|++|++||..++++...+....             .....+++++..+..+  .+
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence            4677888888899999976 788999999999999998877664321             1123456666544444  35


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc-CCCeEEEEEccCCeEeEEeeec-------------
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVK-------------  247 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------------  247 (332)
                      +.|.+||....+......+..   ......++|+|||+++++++ .++.+.++|..+++....+...             
T Consensus       185 ~~i~~~d~~~~~~~~~~~i~~---g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~  261 (432)
T d1qksa2         185 GKILLVDYTDLNNLKTTEISA---ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV  261 (432)
T ss_dssp             TEEEEEETTCSSEEEEEEEEC---CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEE
T ss_pred             CeEEEEEccCCCcceEEEEcc---cCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCccccee
Confidence            899999986543222222221   13457899999999766654 5668999998777655432110             


Q ss_pred             ----------------------------CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce--------------
Q 020021          248 ----------------------------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE--------------  285 (332)
Q Consensus       248 ----------------------------~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~--------------  285 (332)
                                                  ..+...+...+++|++..+++++.|.+.++|+..+...              
T Consensus       262 ~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~  341 (432)
T d1qksa2         262 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK  341 (432)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred             cCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEech
Confidence                                        00112334456777777777777777766665433110              


Q ss_pred             ----------EE--------EecCCCCCCceEEeCCCeeEEEecc-----ce--EEEecccccccc
Q 020021          286 ----------VA--------SWMSFDTEPPVIKWTPGSLMFVTGS-----SE--LSFWIPDLSKLG  326 (332)
Q Consensus       286 ----------~~--------~~~~~~~~v~~l~~sp~~~~l~t~~-----~d--~~~w~~~~~~~~  326 (332)
                                ++        .+..|...+.+++|||||++++...     .+  +.+|+-...+|.
T Consensus       342 ~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~  407 (432)
T d1qksa2         342 AMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK  407 (432)
T ss_dssp             GCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             hhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEE
Confidence                      00        1124556678899999998764332     12  788877666653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=3.1e-21  Score=168.49  Aligned_cols=236  Identities=11%  Similarity=0.040  Sum_probs=174.0

Q ss_pred             CEEEEEeCCCcEEEEEcCCCeeeEEeeecc--cceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccc--
Q 020021           47 SYLVTASDDESIRLYDVTAATCLKTINSKK--YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD--  122 (332)
Q Consensus        47 ~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~--  122 (332)
                      +|+++++.|++|+|||+.++++++++..+.  ..+..++|+|+++.++.+.  ..++.|.+||+.+++.+..+..+..  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~--~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV--NKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE--TTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            589999999999999999999999987643  3467899999999876543  2378999999999999888876543  


Q ss_pred             ---cEEEEEecCCCCeEEEee------------CCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEEeCCEEEE
Q 020021          123 ---RVVSLSLCSSKDCFISGS------------LDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAFGGYIRM  186 (332)
Q Consensus       123 ---~V~~v~~~~~~~~l~s~s------------~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v  186 (332)
                         .+..++|+|++++++.++            .+..+.+||..++.....+..... ....+++++..+.++. +.+.+
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~  158 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-RDLHV  158 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES-SSEEE
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc-CCcce
Confidence               345789999999998876            467888999998888777655432 3456677776555443 44667


Q ss_pred             EECccCCC--------------------------------------------------------------CCeeEEEecC
Q 020021          187 FDARKYEK--------------------------------------------------------------GPFDIFSVGG  204 (332)
Q Consensus       187 wd~~~~~~--------------------------------------------------------------~~~~~~~~~~  204 (332)
                      ||......                                                              +.........
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            76543210                                                              0000000111


Q ss_pred             CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 020021          205 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK  284 (332)
Q Consensus       205 ~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~  284 (332)
                      +......+.++|++.++...  ++.|++||+.+++.+..+..    ...+..++|+|||++|++++.|++|+|||..+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             CCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            12233445677888876655  58999999999999887753    3456789999999999999999999999999999


Q ss_pred             eEEEecC
Q 020021          285 EVASWMS  291 (332)
Q Consensus       285 ~~~~~~~  291 (332)
                      .+.++..
T Consensus       313 ~v~~i~~  319 (337)
T d1pbyb_         313 KKGQVDL  319 (337)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9888754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=5.9e-22  Score=173.77  Aligned_cols=270  Identities=11%  Similarity=0.044  Sum_probs=187.4

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee-cccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEee
Q 020021           40 MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK  118 (332)
Q Consensus        40 i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~  118 (332)
                      ++|++++++|++++.|++|.+||+.+++.++++.. +...+..++|+|+++.++.+..  .++.|.+||+.+++.+..+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~--~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC--CCCcEEEEeCccCeeeeeec
Confidence            47899999999999999999999999999998874 4556788999999998866542  37899999999998877665


Q ss_pred             cc------cccEEEEEecCCCCeEEEee------------CCCcEEEEeCCCceEEEEEEe---c-CceeEEEcCCCeEE
Q 020021          119 GH------HDRVVSLSLCSSKDCFISGS------------LDRTVLLWDQRAEKCQGLLRV---Q-GRPAAAYDDQGLVF  176 (332)
Q Consensus       119 ~h------~~~V~~v~~~~~~~~l~s~s------------~Dg~i~iWd~~~~~~~~~~~~---~-~~~~~~~~~~~~~~  176 (332)
                      ..      ...+..++|+|||++++.++            .+..+.+||..+++....+..   + ........+++.++
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            32      23456789999999887765            467888998877654332221   1 12233444555554


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE--------------------------EEEEcCCCeE
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL--------------------------MLLTTMEGHI  230 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~--------------------------l~~~~~dg~i  230 (332)
                      .  .++.+.+|++.....  .......   .....+.++|++..                          +.++..+..+
T Consensus       160 ~--~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
T d1jmxb_         160 V--AGPDIYKMDVKTGKY--TVALPLR---NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  232 (346)
T ss_dssp             E--ESSSEEEECTTTCCE--EEEECST---TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             E--eCCcceEEEccCCCE--EEEEecC---CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceE
Confidence            3  345688888764321  1111111   11223334444432                          2333445568


Q ss_pred             EEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEe
Q 020021          231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT  310 (332)
Q Consensus       231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t  310 (332)
                      .+||..++........  .+...+..+.++|++.+++.++. +.|++||..+++.+..+. +...+.+++|+|||+++++
T Consensus       233 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v  308 (346)
T d1jmxb_         233 LSVDLKTGKTHTQEFA--DLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL  308 (346)
T ss_dssp             EEEETTTCCEEEEEEE--ECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEE
T ss_pred             EEEECCCCceEEEEee--cccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEE
Confidence            8888887766543322  23456677889999999888764 579999999998887764 4457899999999999988


Q ss_pred             ccce--EEEecccc
Q 020021          311 GSSE--LSFWIPDL  322 (332)
Q Consensus       311 ~~~d--~~~w~~~~  322 (332)
                      ++.|  +.+|+++.
T Consensus       309 ~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         309 GGTFNDLAVFNPDT  322 (346)
T ss_dssp             ESBSSEEEEEETTT
T ss_pred             EeCCCcEEEEECcc
Confidence            7765  88888753

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.3e-21  Score=179.12  Aligned_cols=279  Identities=10%  Similarity=0.031  Sum_probs=183.0

Q ss_pred             HhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee--EEee---ecccceeEEEEccCCCEEEEec
Q 020021           21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTIN---SKKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        21 ~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~--~~~~---~~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      +.+.+..+.|..|. .+..++|||||+++++++.|+++++||+.+++..  ..+.   .+...+....|+|+++.++.++
T Consensus        49 ~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~  127 (432)
T d1qksa2          49 GSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA  127 (432)
T ss_dssp             TTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEc
Confidence            36677888888774 5899999999999999999999999999887643  3332   3333445556788999876544


Q ss_pred             CCCCCceeEEEEccCCceEEEeecc-----------cccEEEEEecCCCCeE-EEeeCCCcEEEEeCCCceEEEEEEec-
Q 020021           96 KNGWDESLRLLSLHDNKYLRYFKGH-----------HDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQ-  162 (332)
Q Consensus        96 ~~g~d~~v~v~d~~~~~~~~~~~~h-----------~~~V~~v~~~~~~~~l-~s~s~Dg~i~iWd~~~~~~~~~~~~~-  162 (332)
                        ..++++++||.++++.+..+..|           ......+.+++++..+ ++...++.|.+||..+.+.......+ 
T Consensus       128 --~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~  205 (432)
T d1qksa2         128 --YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA  205 (432)
T ss_dssp             --EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred             --CCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcc
Confidence              23789999999999988877654           3445678889988764 67778899999998876654433322 


Q ss_pred             --CceeEEEcCCCeEEEEEe--CCEEEEEECccCCC-------------CC-----------ee-----------EEEec
Q 020021          163 --GRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEK-------------GP-----------FD-----------IFSVG  203 (332)
Q Consensus       163 --~~~~~~~~~~~~~~~~~~--~~~i~vwd~~~~~~-------------~~-----------~~-----------~~~~~  203 (332)
                        ......+++++.++.++.  ++.+.++|.+....             ..           ..           .....
T Consensus       206 g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~  285 (432)
T d1qksa2         206 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  285 (432)
T ss_dssp             CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             cCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccc
Confidence              223567788887555554  46888888653210             00           00           00000


Q ss_pred             -----CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeE-------eEEeee----------------------cCC
Q 020021          204 -----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-------LSTYNV----------------------KPV  249 (332)
Q Consensus       204 -----~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~----------------------~~~  249 (332)
                           .+...+....++|++..+++++.++..++|+..+...       +.....                      ...
T Consensus       286 ~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~  365 (432)
T d1qksa2         286 PEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE  365 (432)
T ss_dssp             TTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS
T ss_pred             cccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCC
Confidence                 0111345556777776666666666666665432110       000000                      012


Q ss_pred             CCCcceEEEECCCCCEEEEEc-----CCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEE
Q 020021          250 SRNSTLEASFSPEGMFVISGS-----GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF  308 (332)
Q Consensus       250 ~~~~~~~v~~spdg~~l~sgs-----~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  308 (332)
                      +...+..++|||||++++...     .||.|.|||..+++....++...      .++|+|.+-
T Consensus       366 ~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~------~~tp~G~~~  423 (432)
T d1qksa2         366 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDER------LVTPTGKFN  423 (432)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred             CCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCCC------ccCCCeeEE
Confidence            344577889999999885553     47899999999998877775532      136777653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=2.9e-19  Score=159.03  Aligned_cols=272  Identities=10%  Similarity=-0.010  Sum_probs=189.0

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeEEeeecccce-------eEEEE
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKKYGV-------DLVCF   84 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs----------~D~tv~iwd~~~~~~~~~~~~~~~~v-------~~~~~   84 (332)
                      .+.+...++.++..+  .+.|+|||++|+.++          .|++|.+||+.+++.+..+..+....       ..+.|
T Consensus        55 ~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (373)
T d2madh_          55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN  132 (373)
T ss_pred             CCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE
Confidence            456666777776654  789999999998875          46789999999999988776554332       34677


Q ss_pred             ccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEecC
Q 020021           85 TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQG  163 (332)
Q Consensus        85 ~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~  163 (332)
                      +++++.++..... .++.+.+|+....+..    .|.....++.++|+++ .+++.+.|+++.+||..............
T Consensus       133 s~dg~~~~v~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~  207 (373)
T d2madh_         133 TPNNADLLFFQFA-AGPAVGLVVQGGSSDD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAM  207 (373)
T ss_pred             EeCCCcEEEEEEc-CCCceEEeeccCCeEE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeec
Confidence            7887766554422 2567888888776543    3444567888999887 55789999999999998877665443211


Q ss_pred             c--------eeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeE--------EEecCCCCCceeEEEcCCCCEE------
Q 020021          164 R--------PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI--------FSVGGDISDANVVKFSNDGRLM------  221 (332)
Q Consensus       164 ~--------~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~--------~~~~~~~~~v~~v~~s~dg~~l------  221 (332)
                      .        ........+.++..+.++.+.+|+...........        ............+++++++..+      
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  287 (373)
T d2madh_         208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE  287 (373)
T ss_pred             cccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCC
Confidence            1        12234455667777778889888876432111110        0111111223445666666544      


Q ss_pred             ----EEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE--EEEEcCCCcEEEEECCCCceEEEecCCCCC
Q 020021          222 ----LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF--VISGSGDGSVYAWSVRSGKEVASWMSFDTE  295 (332)
Q Consensus       222 ----~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~--l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~  295 (332)
                          +....++.+.+||..+++.+..+.    +...+..++|||||+.  +++++.|++|+|||+.+++.+.++..+...
T Consensus       288 ~~~~~~~~~~~~v~~~d~~t~~~~~~~~----~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~  363 (373)
T d2madh_         288 QSAWKLHAAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSG  363 (373)
T ss_pred             CceEEeecCCCeEEEEECCCCcEEEEec----CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCC
Confidence                455667789999999998887664    2345668999999984  578899999999999999999999888888


Q ss_pred             CceEEeCCC
Q 020021          296 PPVIKWTPG  304 (332)
Q Consensus       296 v~~l~~sp~  304 (332)
                      +..|++.++
T Consensus       364 P~~l~~~~~  372 (373)
T d2madh_         364 PQVLSVMNE  372 (373)
T ss_pred             CcEEEEecC
Confidence            888887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=3e-19  Score=156.19  Aligned_cols=269  Identities=10%  Similarity=-0.031  Sum_probs=183.0

Q ss_pred             eEecHHHHhcccceeEec-cCCCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeEEeeecc------cceeEEEEc
Q 020021           14 LELSEEILQSMEVGMSFR-DYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKK------YGVDLVCFT   85 (332)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~-~h~~~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~~~~~~~~~~~~------~~v~~~~~~   85 (332)
                      +.+++-  .+.++.++++ .|...+.+++|+|||+++ ++++.|++|.+||+.+++.+..+....      ..+..++|+
T Consensus        20 v~v~D~--~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s   97 (346)
T d1jmxb_          20 LHVVDV--ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS   97 (346)
T ss_dssp             EEEEET--TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEEC
T ss_pred             EEEEEC--CCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEe
Confidence            444443  4567778876 567778899999999986 667789999999999999887765322      234578999


Q ss_pred             cCCCEEEEecCC---------CCCceeEEEEccCCceEEEeeccc--ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce
Q 020021           86 SHPTTVIYSSKN---------GWDESLRLLSLHDNKYLRYFKGHH--DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK  154 (332)
Q Consensus        86 ~~~~~~~~~s~~---------g~d~~v~v~d~~~~~~~~~~~~h~--~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~  154 (332)
                      ++++.++.+...         ..+..+.+|+..+++....+..|.  ..+..+.++++++.++++   +.+.+||..+++
T Consensus        98 ~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  174 (346)
T d1jmxb_          98 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGK  174 (346)
T ss_dssp             TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCC
T ss_pred             cCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCC
Confidence            999988766421         125678899988877655444333  345556677777766653   468999998887


Q ss_pred             EEEEEEecCce-eEEEcCCC-----------e----------------EEEEEeCCEEEEEECccCCCCCeeEEEecCCC
Q 020021          155 CQGLLRVQGRP-AAAYDDQG-----------L----------------VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI  206 (332)
Q Consensus       155 ~~~~~~~~~~~-~~~~~~~~-----------~----------------~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~  206 (332)
                      ....+.....+ ...+.+.+           .                +.....+..+.+||.....   ........+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  251 (346)
T d1jmxb_         175 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK---THTQEFADLT  251 (346)
T ss_dssp             EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC---EEEEEEEECS
T ss_pred             EEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc---eEEEEeeccc
Confidence            76665432111 00111111           0                0111123457777765432   2222223344


Q ss_pred             CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 020021          207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV  286 (332)
Q Consensus       207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~  286 (332)
                      ..+..+.+++++..++... ++.|.+||..+++.+..+..    ...+..++|||||++|++++.|+.|+|||+.+++.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         252 ELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             SCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             ceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            5667788898888777654 45899999999998877653    235678999999999999999999999999999999


Q ss_pred             EEecCCCCC
Q 020021          287 ASWMSFDTE  295 (332)
Q Consensus       287 ~~~~~~~~~  295 (332)
                      .++....+.
T Consensus       327 ~~i~~p~g~  335 (346)
T d1jmxb_         327 KNIKLPGGD  335 (346)
T ss_dssp             EEEECSSSC
T ss_pred             EEEECCCCC
Confidence            888655443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.6e-18  Score=152.88  Aligned_cols=274  Identities=13%  Similarity=0.104  Sum_probs=180.6

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEE----------eCCCcEEEEEcCCCeeeEEeeeccc-------ceeEEEE
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTA----------SDDESIRLYDVTAATCLKTINSKKY-------GVDLVCF   84 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tg----------s~D~tv~iwd~~~~~~~~~~~~~~~-------~v~~~~~   84 (332)
                      .+.++.+++..+..+  .++|||||++|+.+          +.|+.|++||+.+++.+..+..+..       ....++|
T Consensus        36 ~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (355)
T d2bbkh_          36 EAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL  113 (355)
T ss_dssp             TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred             CCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEE
Confidence            456667777766544  68999999988754          4588999999999998887754322       1345789


Q ss_pred             ccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec--
Q 020021           85 TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--  162 (332)
Q Consensus        85 ~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--  162 (332)
                      ++++..++.+.. +.+..+.+|+..+++.+..+..+.....   +.......++.+.|+...++..........+...  
T Consensus       114 s~dg~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~  189 (355)
T d2bbkh_         114 TPDGKTLLFYQF-SPAPAVGVVDLEGKAFKRMLDVPDCYHI---FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF  189 (355)
T ss_dssp             CTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEECCSEEEE---EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC
T ss_pred             ecCCCeeEEecC-CCCceeeeeecCCCcEeeEEecCCcceE---eecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc
Confidence            999998877653 3367899999999988887765543221   1112233444455555554443322222111110  


Q ss_pred             -------CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEec--------CCCCCceeEEEcCCCCEEEEEcCC
Q 020021          163 -------GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG--------GDISDANVVKFSNDGRLMLLTTME  227 (332)
Q Consensus       163 -------~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~--------~~~~~v~~v~~s~dg~~l~~~~~d  227 (332)
                             ........++..++....++.+.+|++.......+......        ........+++++++..++....+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~  269 (355)
T d2bbkh_         190 HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ  269 (355)
T ss_dssp             SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             cceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEecc
Confidence                   01123344555666667789999999875432111111100        001233568999999988776543


Q ss_pred             ----------CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC--EEEEEcCCCcEEEEECCCCceEEEecCCCCC
Q 020021          228 ----------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM--FVISGSGDGSVYAWSVRSGKEVASWMSFDTE  295 (332)
Q Consensus       228 ----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~  295 (332)
                                ..|.+||..+++.+..+..    ...+..++|||||+  ++++++.|++|+|||+++++.+.++..+...
T Consensus       270 ~~~~~~~~~~~~v~v~d~~t~~~~~~~~~----~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~  345 (355)
T d2bbkh_         270 RDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG  345 (355)
T ss_dssp             CCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred             CCceeecCCCCeEEEEeCCCCcEEEEecC----CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCC
Confidence                      3699999999998877653    23456899999998  5677888999999999999999999888777


Q ss_pred             CceEEeCCCe
Q 020021          296 PPVIKWTPGS  305 (332)
Q Consensus       296 v~~l~~sp~~  305 (332)
                      ...+.+.++|
T Consensus       346 p~~i~~~d~~  355 (355)
T d2bbkh_         346 PQVITTADMG  355 (355)
T ss_dssp             CCEEECCCCC
T ss_pred             ccEEEeCCCC
Confidence            7777776654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=9.5e-18  Score=149.01  Aligned_cols=294  Identities=8%  Similarity=-0.034  Sum_probs=192.9

Q ss_pred             eccCCCcEEEEEECCCCCEEEEE-----eCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC-------
Q 020021           30 FRDYNGRISSMDFHKSSSYLVTA-----SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------   97 (332)
Q Consensus        30 l~~h~~~I~~i~~s~dg~~l~tg-----s~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------   97 (332)
                      ..+|.+++.+++++|||+.++..     +.++.|.+||..+++.+.++..+..  ..++|+|+++.++++...       
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCccccc
Confidence            45689999999999999988654     3446799999999999998876543  368999999998887532       


Q ss_pred             CCCceeEEEEccCCceEEEeecccccE-------EEEEecCCCCeEEEe--eCCCcEEEEeCCCceEEEEEEecCceeEE
Q 020021           98 GWDESLRLLSLHDNKYLRYFKGHHDRV-------VSLSLCSSKDCFISG--SLDRTVLLWDQRAEKCQGLLRVQGRPAAA  168 (332)
Q Consensus        98 g~d~~v~v~d~~~~~~~~~~~~h~~~V-------~~v~~~~~~~~l~s~--s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~  168 (332)
                      ..++.|.+||..+++.+..+..+....       ..+.|+++++.++..  ..++.+.+|+....+.......+  ....
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  171 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP--TCYH  171 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccc--eeEE
Confidence            235789999999999888877666544       446788888866544  44568899998776654443322  2334


Q ss_pred             EcCCC--eEEEEEeCCEEEEEECccCCCCCeeEEEe--cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe
Q 020021          169 YDDQG--LVFAVAFGGYIRMFDARKYEKGPFDIFSV--GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (332)
Q Consensus       169 ~~~~~--~~~~~~~~~~i~vwd~~~~~~~~~~~~~~--~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (332)
                      +.+++  .+++...++.+.+|+..............  .+.........+++++. ++..+.++.+.+|+...+......
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~  250 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKA  250 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEE
Confidence            44444  34455568999999976543221111100  11111223445566654 456667889999998776543222


Q ss_pred             ee--cCC-------CCCcceEEEECCCCCEE----------EEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCe
Q 020021          245 NV--KPV-------SRNSTLEASFSPEGMFV----------ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS  305 (332)
Q Consensus       245 ~~--~~~-------~~~~~~~v~~spdg~~l----------~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~  305 (332)
                      ..  ...       .......++++|++..+          ++...++.+.+||+.+++.+..+. +...+..++|+|||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG  329 (373)
T d2madh_         251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDG  329 (373)
T ss_pred             eeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCC
Confidence            11  000       01122235666666544          455667789999999999888764 55678999999999


Q ss_pred             e--EEEeccce--EEEeccc-cccccccc
Q 020021          306 L--MFVTGSSE--LSFWIPD-LSKLGAYV  329 (332)
Q Consensus       306 ~--~l~t~~~d--~~~w~~~-~~~~~~~~  329 (332)
                      +  ++++++.|  +.+|+.. .+.++.+.
T Consensus       330 ~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         330 GPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            7  34666665  8888874 44444443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.3e-17  Score=145.37  Aligned_cols=273  Identities=10%  Similarity=0.086  Sum_probs=175.7

Q ss_pred             EEEEEeCCCcEEEEEcCCCeeeEEee--ecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEee---cccc
Q 020021           48 YLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK---GHHD  122 (332)
Q Consensus        48 ~l~tgs~D~tv~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~---~h~~  122 (332)
                      .+++++.|++|++|+++....+..+.  .+...+..++|+|+++.++.+..  .|+.|++|++........+.   .+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~--~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR--PEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            45788999999999997654433332  45567889999999999876643  37899999998765433333   2345


Q ss_pred             cEEEEEecCCCCeEEEeeC-CCcEEEEeCCCceEEEEEEec----CceeEEEcCCCeEEEEEe--CCEEEEEECccCCCC
Q 020021          123 RVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKG  195 (332)
Q Consensus       123 ~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~i~vwd~~~~~~~  195 (332)
                      .+..++|+|||++|++++. ++++.+|+.............    ......+++++..+....  +..|.+|+.......
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence            5778999999999888875 678999987766544433321    123456677776555443  478999987653221


Q ss_pred             CeeEE--EecCCCCCceeEEEcCCCCEEEEE-cCCCeEEEEEccCCe--E--eEEeeec---CCCCCcceEEEECCCCCE
Q 020021          196 PFDIF--SVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGT--L--LSTYNVK---PVSRNSTLEASFSPEGMF  265 (332)
Q Consensus       196 ~~~~~--~~~~~~~~v~~v~~s~dg~~l~~~-~~dg~i~i~d~~~~~--~--~~~~~~~---~~~~~~~~~v~~spdg~~  265 (332)
                      .....  ...........++|++++.++... ...+...+++.....  .  .......   ..........+++||+++
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  243 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  243 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence            11111  111112345679999999887655 456677777754321  1  1111111   112234456789999987


Q ss_pred             EEEE-cCCCcEEEEECCCCceEEE---ecCCCCCCceEEeCCCeeEEEecc---ceEEEecccc
Q 020021          266 VISG-SGDGSVYAWSVRSGKEVAS---WMSFDTEPPVIKWTPGSLMFVTGS---SELSFWIPDL  322 (332)
Q Consensus       266 l~sg-s~Dg~i~vWd~~~~~~~~~---~~~~~~~v~~l~~sp~~~~l~t~~---~d~~~w~~~~  322 (332)
                      ++.. ..++.+.+|++........   .......+..++|+|||++|+.++   ..+.+|.++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         244 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            6665 5677999999876543322   223445678899999999765543   2389997654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=3.6e-18  Score=150.53  Aligned_cols=285  Identities=11%  Similarity=0.005  Sum_probs=187.7

Q ss_pred             EEECCCCCEEEEE-----eCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC-------CCCceeEEEE
Q 020021           40 MDFHKSSSYLVTA-----SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLS  107 (332)
Q Consensus        40 i~~s~dg~~l~tg-----s~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~v~v~d  107 (332)
                      .+.+|||+.++..     +.+.+|.+||..+++.+.++..+..  ..++|+|+++.++.++..       ..|+.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            3558999988654     3567899999999999998876543  368999999988765421       1267899999


Q ss_pred             ccCCceEEEeeccccc-------EEEEEecCCCCeEEEe--eCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021          108 LHDNKYLRYFKGHHDR-------VVSLSLCSSKDCFISG--SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV  178 (332)
Q Consensus       108 ~~~~~~~~~~~~h~~~-------V~~v~~~~~~~~l~s~--s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      ..+++.+..+..+...       ...+.|++++++++.+  +.+..+.+||..+++....+..+.............++.
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH  164 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEE
Confidence            9999988777644332       2457899999977665  456789999999998877766544332222233334444


Q ss_pred             EeCCEEEEEECccCCCCCeeEEEe----cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeE--EeeecC----
Q 020021          179 AFGGYIRMFDARKYEKGPFDIFSV----GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS--TYNVKP----  248 (332)
Q Consensus       179 ~~~~~i~vwd~~~~~~~~~~~~~~----~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~----  248 (332)
                      +.|+....+.......  ......    ..+...+....+++++..++..+.++.+++|+...+....  ......    
T Consensus       165 ~~dg~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGT--PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER  242 (355)
T ss_dssp             ETTSCEEEEECCSSSC--CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred             cCCCCEEEEEecCCCe--EEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceE
Confidence            4555444443322111  011100    0112234556788888889999999999999988765421  111100    


Q ss_pred             ---CCCCcceEEEECCCCCEEEEEcCCC----------cEEEEECCCCceEEEecCCCCCCceEEeCCCee--EEEeccc
Q 020021          249 ---VSRNSTLEASFSPEGMFVISGSGDG----------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSS  313 (332)
Q Consensus       249 ---~~~~~~~~v~~spdg~~l~sgs~Dg----------~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~t~~~  313 (332)
                         ........++++||+..++..+.++          .|++||..+++.+..+.. ...+.+++|+|||+  ++++++.
T Consensus       243 ~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~  321 (355)
T d2bbkh_         243 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTG  321 (355)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETT
T ss_pred             eeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECC
Confidence               0011223478999999888775543          699999999998877653 34578999999997  4566654


Q ss_pred             e--EEEecccccc-ccccc
Q 020021          314 E--LSFWIPDLSK-LGAYV  329 (332)
Q Consensus       314 d--~~~w~~~~~~-~~~~~  329 (332)
                      |  +.+|+....+ ++.+.
T Consensus       322 d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         322 DKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             TTEEEEEETTTCCEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEe
Confidence            4  8888774433 44443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5.9e-17  Score=140.99  Aligned_cols=253  Identities=11%  Similarity=0.091  Sum_probs=163.1

Q ss_pred             ccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeEEeee---cccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           31 RDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINS---KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      ..|.+.|.+|+|||||++| +++..|++|++|++.......++..   ....+..++|+|+++.++.+..  .+..+.+|
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~--~~~~v~~~  110 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY--NAGNVSVT  110 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET--TTTEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeeccc--CCCceeee
Confidence            4588999999999999988 4555689999999987654433322   2334567899999999888753  26789999


Q ss_pred             EccCCceEE--EeecccccEEEEEecCCCCeEEEeeC-CCcEEEEeCCCceEEEEEEe-----c---CceeEEEcCCCeE
Q 020021          107 SLHDNKYLR--YFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRV-----Q---GRPAAAYDDQGLV  175 (332)
Q Consensus       107 d~~~~~~~~--~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~-----~---~~~~~~~~~~~~~  175 (332)
                      +........  ....|...+.++.++|++++++.++. +..|.+|+............     .   ......+++++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~  190 (333)
T d1ri6a_         111 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  190 (333)
T ss_dssp             EEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             ccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecccee
Confidence            887765433  34456777889999999998887765 45789999765433222111     1   1123455666554


Q ss_pred             EEEEe--CCEEEEEECccCCCCCeeEEEe---c---CCCCCceeEEEcCCCCEEEE-EcCCCeEEEEEccCCeEeEEeee
Q 020021          176 FAVAF--GGYIRMFDARKYEKGPFDIFSV---G---GDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTLLSTYNV  246 (332)
Q Consensus       176 ~~~~~--~~~i~vwd~~~~~~~~~~~~~~---~---~~~~~v~~v~~s~dg~~l~~-~~~dg~i~i~d~~~~~~~~~~~~  246 (332)
                      +....  .+...+|+..............   .   ........+++++|++++.. +..++.+.+|+............
T Consensus       191 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (333)
T d1ri6a_         191 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  270 (333)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             EEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEE
Confidence            44443  4677888764332211111111   0   01123456789999986655 56678999998765433322221


Q ss_pred             cCCCCCcceEEEECCCCCEEEEEc-CCCcEEEEEC--CCCce
Q 020021          247 KPVSRNSTLEASFSPEGMFVISGS-GDGSVYAWSV--RSGKE  285 (332)
Q Consensus       247 ~~~~~~~~~~v~~spdg~~l~sgs-~Dg~i~vWd~--~~~~~  285 (332)
                      .......+..++|||||++|++++ .++.|+||++  ++|+.
T Consensus       271 ~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         271 FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            111223456789999999987764 5689999954  56653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.3e-17  Score=144.99  Aligned_cols=225  Identities=11%  Similarity=0.133  Sum_probs=157.4

Q ss_pred             EEEEecCCCCCceeEEEEccCCceEEEeecc--cccEEEEEecCCCCeE-EEeeCCCcEEEEeCCCceEEEEEEecC---
Q 020021           90 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGH--HDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQG---  163 (332)
Q Consensus        90 ~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h--~~~V~~v~~~~~~~~l-~s~s~Dg~i~iWd~~~~~~~~~~~~~~---  163 (332)
                      ++++++.   |++|++||+++++.++.+..+  ...+.+++|+|||+++ ++++.|+.|.+||+++++....+....   
T Consensus         3 ~~vt~~~---d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           3 YILAPAR---PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEET---TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             EEEEEcC---CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            4555543   889999999999999888653  3567899999999986 677889999999999998877665432   


Q ss_pred             ----ceeEEEcCCCeEEEEEe-------------CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC
Q 020021          164 ----RPAAAYDDQGLVFAVAF-------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM  226 (332)
Q Consensus       164 ----~~~~~~~~~~~~~~~~~-------------~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~  226 (332)
                          .....+++++..+..+.             +..+.+||......  .....   ....+..++|+|||+++++++.
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~---~~~~~~~~~~s~dg~~l~~~~~  154 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAFE---APRQITMLAWARDGSKLYGLGR  154 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEEE---CCSSCCCEEECTTSSCEEEESS
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE--EEecc---ccCCceEEEEcCCCCEEEEEcC
Confidence                12456667665443332             35778888765321  11222   1235678999999999988864


Q ss_pred             CCeEEEEEccCCeEeEEeeecC----------------------------------------------------------
Q 020021          227 EGHIHVLDSFRGTLLSTYNVKP----------------------------------------------------------  248 (332)
Q Consensus       227 dg~i~i~d~~~~~~~~~~~~~~----------------------------------------------------------  248 (332)
                        .+.+||..+++....+....                                                          
T Consensus       155 --~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (337)
T d1pbyb_         155 --DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             --SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             --CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE
Confidence              46778887776554432100                                                          


Q ss_pred             -----CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccc
Q 020021          249 -----VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD  321 (332)
Q Consensus       249 -----~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~  321 (332)
                           .+.......+++|++.+++.+  ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.+  +.+|+..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             EEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence                 011122345678888888766  5889999999999887764 55678999999999988887665  7888874


Q ss_pred             -cccccc
Q 020021          322 -LSKLGA  327 (332)
Q Consensus       322 -~~~~~~  327 (332)
                       .+.+++
T Consensus       310 t~~~v~~  316 (337)
T d1pbyb_         310 TLEKKGQ  316 (337)
T ss_dssp             TCCEEEE
T ss_pred             CCcEEEE
Confidence             334433

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=9e-16  Score=136.45  Aligned_cols=285  Identities=7%  Similarity=-0.052  Sum_probs=181.6

Q ss_pred             CCCcEEEEEECCCCCE---EEEEeCCCc--EEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecC-------CCCC
Q 020021           33 YNGRISSMDFHKSSSY---LVTASDDES--IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-------NGWD  100 (332)
Q Consensus        33 h~~~I~~i~~s~dg~~---l~tgs~D~t--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~-------~g~d  100 (332)
                      +.++...++..++++.   .++...+++  +.+||..+++.+.++..+...  .++++|+++.++.++.       +..|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            4455555667788874   234556666  555599999999888766543  5789999998887642       2347


Q ss_pred             ceeEEEEccCCceEEEeeccccc-------EEEEEecCCCCeEEEee-CCCcEEEEeCCCceEEEEEEecCceeEEEcCC
Q 020021          101 ESLRLLSLHDNKYLRYFKGHHDR-------VVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ  172 (332)
Q Consensus       101 ~~v~v~d~~~~~~~~~~~~h~~~-------V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~  172 (332)
                      +.|++||..+++.+..+..|...       ...++|+|||++++.+. .++++.+||+.+++....+..+..........
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  175 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA  175 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEET
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCC
Confidence            78999999999988877654332       23588999999887775 57999999999998887776654333222333


Q ss_pred             CeEEEEEeCCEEEEEECccCCCCCeeE--EEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC-
Q 020021          173 GLVFAVAFGGYIRMFDARKYEKGPFDI--FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-  249 (332)
Q Consensus       173 ~~~~~~~~~~~i~vwd~~~~~~~~~~~--~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-  249 (332)
                      ..+++.+.|+.+.+++...........  .....+......+.+++++..+..  ..+.+++++...+........... 
T Consensus       176 ~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~  253 (368)
T d1mdah_         176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNE  253 (368)
T ss_dssp             TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSC
T ss_pred             ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeeccccc
Confidence            445555567777777765432211000  001112223455677888775544  345666677655443322111000 


Q ss_pred             --------CCCcceEEEECCCCCEEEEEcCC---------CcEEEEECCCCceEEEecCCCCCCceEEeCCCee--EEEe
Q 020021          250 --------SRNSTLEASFSPEGMFVISGSGD---------GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVT  310 (332)
Q Consensus       250 --------~~~~~~~v~~spdg~~l~sgs~D---------g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~t  310 (332)
                              .......++++|++..++....+         ..|++||..+++.+..+.. ...+..++|+|||+  ++++
T Consensus       254 ~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEE
T ss_pred             ceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEE
Confidence                    00112247889998877665332         2599999999988877643 34678899999986  3466


Q ss_pred             ccce--EEEecccc
Q 020021          311 GSSE--LSFWIPDL  322 (332)
Q Consensus       311 ~~~d--~~~w~~~~  322 (332)
                      +..+  +.+|+...
T Consensus       333 ~~~~~~v~v~D~~t  346 (368)
T d1mdah_         333 SAGTEVLDIYDAAS  346 (368)
T ss_dssp             ETTTTEEEEEESSS
T ss_pred             eCCCCeEEEEECCC
Confidence            5544  88888754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=4.3e-15  Score=131.97  Aligned_cols=267  Identities=11%  Similarity=-0.027  Sum_probs=168.7

Q ss_pred             hcccceeEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeEEeeeccc-------ceeEEEE
Q 020021           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKKY-------GVDLVCF   84 (332)
Q Consensus        22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs----------~D~tv~iwd~~~~~~~~~~~~~~~-------~v~~~~~   84 (332)
                      .+.++..++.++..+  .+.|+|||+.|+.++          .|++|++||..+++++..+..+..       ....++|
T Consensus        54 ~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~  131 (368)
T d1mdah_          54 GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred             CCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE
Confidence            345555666666655  578999999887754          478899999999999888765422       1345899


Q ss_pred             ccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-
Q 020021           85 TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-  163 (332)
Q Consensus        85 ~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-  163 (332)
                      +++++.++.+..  .++++.+||+.+++.+..+..+.....   +......+++.+.||++.+|+.............. 
T Consensus       132 SpDGk~l~va~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~  206 (368)
T d1mdah_         132 CASSACLLFFLF--GSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             CTTSSCEEEEEC--SSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             CCCCCEEEEEeC--CCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence            999999887753  268999999999998887766544321   11234577788888888888875543322111100 


Q ss_pred             -------ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEE--------ecCCCCCceeEEEcCCCCEEEEEcCC-
Q 020021          164 -------RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFS--------VGGDISDANVVKFSNDGRLMLLTTME-  227 (332)
Q Consensus       164 -------~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~--------~~~~~~~v~~v~~s~dg~~l~~~~~d-  227 (332)
                             .......+.+..+ ...++.+.+++.............        ..........+++++++..+.....+ 
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~  285 (368)
T d1mdah_         207 TGAQNCSSQAAQANYPGMLV-WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEE-ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             ccccccceeecccccCcEEE-EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence                   0112233333332 223344555554321100000000        00001223567899999877655332 


Q ss_pred             --------CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC--EEEEEcCCCcEEEEECCCCceEEEecCCCCCCc
Q 020021          228 --------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM--FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP  297 (332)
Q Consensus       228 --------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~  297 (332)
                              ..|.+||..+++.+..+..    ...+..++|||||+  .+++++.|++|+|||..+++.+.++.... ...
T Consensus       286 ~~~~~~~~~~v~v~D~~t~~~~~~~~~----~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~-~P~  360 (368)
T d1mdah_         286 SRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPE  360 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCC
T ss_pred             CceeecCCceEEEEECCCCcEeEEecC----CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCC-CCC
Confidence                    3599999999988876653    23456799999997  35677889999999999999998876433 345


Q ss_pred             eEEe
Q 020021          298 VIKW  301 (332)
Q Consensus       298 ~l~~  301 (332)
                      .|++
T Consensus       361 ~l~~  364 (368)
T d1mdah_         361 SLSV  364 (368)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            5554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=2.7e-13  Score=121.81  Aligned_cols=257  Identities=12%  Similarity=0.068  Sum_probs=163.4

Q ss_pred             EEEEeCCCcEEEEEcCCCeeeEEeeec------------------------------ccceeEEEEccCCCEEEEecCCC
Q 020021           49 LVTASDDESIRLYDVTAATCLKTINSK------------------------------KYGVDLVCFTSHPTTVIYSSKNG   98 (332)
Q Consensus        49 l~tgs~D~tv~iwd~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~~~~~s~~g   98 (332)
                      ++|++.+|.|++||+.+++.++.+.-.                              ........++++|++++....  
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~--   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK--   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET--
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC--
Confidence            688999999999999999988775321                              111222334678888877653  


Q ss_pred             CCceeEEEEccCCceEEEee-cccccEEEEEecCCCC--eEEEeeCCC-----------------cEEEEeCCCceEEEE
Q 020021           99 WDESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKD--CFISGSLDR-----------------TVLLWDQRAEKCQGL  158 (332)
Q Consensus        99 ~d~~v~v~d~~~~~~~~~~~-~h~~~V~~v~~~~~~~--~l~s~s~Dg-----------------~i~iWd~~~~~~~~~  158 (332)
                      .++.|.++|+.+++....+. .+.....+++|+|+++  +++..+.+.                 .+..+|..+.+....
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            37899999999998877765 4567889999999998  455444432                 234577777666655


Q ss_pred             EEecCce-eEEEcCCCeEEEEEe-C-C--------------EEEEEE--------------------------CccCCCC
Q 020021          159 LRVQGRP-AAAYDDQGLVFAVAF-G-G--------------YIRMFD--------------------------ARKYEKG  195 (332)
Q Consensus       159 ~~~~~~~-~~~~~~~~~~~~~~~-~-~--------------~i~vwd--------------------------~~~~~~~  195 (332)
                      +.....+ ...+++++..+.++. + .              .|.+.+                          ...  ..
T Consensus       172 I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~--~~  249 (441)
T d1qnia2         172 VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE--SE  249 (441)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS--CS
T ss_pred             EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC--Cc
Confidence            5544432 456667666554443 2 1              222222                          110  00


Q ss_pred             CeeEEEecCCCCCceeEEEcCCCCEEE-EEcCCCeEEEEEccCCeEe--------EEeeecCCCCCcceEEEECCCCCEE
Q 020021          196 PFDIFSVGGDISDANVVKFSNDGRLML-LTTMEGHIHVLDSFRGTLL--------STYNVKPVSRNSTLEASFSPEGMFV  266 (332)
Q Consensus       196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~-~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~~~v~~spdg~~l  266 (332)
                      .......+   .....+.+||||++++ ++..+++|.+||+.+....        ..+.......-...-.+|+++|+.+
T Consensus       250 v~~~IPvg---ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~y  326 (441)
T d1qnia2         250 FTRYIPVP---KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAY  326 (441)
T ss_dssp             SEEEECCB---SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEE
T ss_pred             eEEEEeCC---CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEE
Confidence            11111111   2346789999999765 5678999999998652210        0111111111112346899999999


Q ss_pred             EEEcCCCcEEEEECCC---------Cc-eEEEe-----cCCCCCCceEEeCCCeeEEEecc
Q 020021          267 ISGSGDGSVYAWSVRS---------GK-EVASW-----MSFDTEPPVIKWTPGSLMFVTGS  312 (332)
Q Consensus       267 ~sgs~Dg~i~vWd~~~---------~~-~~~~~-----~~~~~~v~~l~~sp~~~~l~t~~  312 (332)
                      .|...|..|..|++..         .. .+..+     .+|...+...+|+|||++|++++
T Consensus       327 ts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         327 TTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             EcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            9999999999999842         11 22222     46666677788999999999993

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.48  E-value=6.8e-13  Score=121.41  Aligned_cols=116  Identities=11%  Similarity=0.155  Sum_probs=90.6

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeC---------CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021           29 SFRDYNGRISSMDFHKSSSYLVTASD---------DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (332)
Q Consensus        29 ~l~~h~~~I~~i~~s~dg~~l~tgs~---------D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   99 (332)
                      +|.+|...|.+++|||||++|+.++.         ++.+.|||+.+++. ..+..+...+..+.|+|+|+.+++..    
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~----  130 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW----  130 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE----
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEee----
Confidence            45667789999999999999998854         56788999998874 45777777889999999999999875    


Q ss_pred             CceeEEEEccCCceEEEeeccc------------------ccEEEEEecCCCCeEEEeeCCCc-EEEEe
Q 020021          100 DESLRLLSLHDNKYLRYFKGHH------------------DRVVSLSLCSSKDCFISGSLDRT-VLLWD  149 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~------------------~~V~~v~~~~~~~~l~s~s~Dg~-i~iWd  149 (332)
                      ++.+.+|+..+++..+....+.                  +...++.|+|||++|+....|.+ ++.|+
T Consensus       131 ~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         131 NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence            6789999999887765443221                  22355789999999999987654 55443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=3.5e-11  Score=107.86  Aligned_cols=242  Identities=10%  Similarity=0.055  Sum_probs=153.5

Q ss_pred             ccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeEEeee-cccceeEEEEccCCCEEEEecCCCC------C--
Q 020021           31 RDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGW------D--  100 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~------d--  100 (332)
                      ..|.-..+...++|||++| ++...+.+|.++|+.++++.+.+.- .....+.++|+++++..+..+....      |  
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            3455666677778999988 5556888999999999998887653 3456888999999986433321100      0  


Q ss_pred             --------ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCC------------------------------
Q 020021          101 --------ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD------------------------------  142 (332)
Q Consensus       101 --------~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~D------------------------------  142 (332)
                              ..+..+|.++.+....+.-. .....+.|+|+|++++..+.+                              
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                    12355777777765555433 346778999999988777643                              


Q ss_pred             -----------CcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEEe--CCEEEEEECccCCC------CC-eeEEE
Q 020021          143 -----------RTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAF--GGYIRMFDARKYEK------GP-FDIFS  201 (332)
Q Consensus       143 -----------g~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~i~vwd~~~~~~------~~-~~~~~  201 (332)
                                 +.+.+++....+....+..... .....++++.++.++.  +++|.+||+.+...      .. ..+..
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence                       3444554444333334433222 2467778888776663  68999999865321      00 00111


Q ss_pred             ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC----------CeEeEEeeec--CCCCCcceEEEECCCCCEEEEE
Q 020021          202 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----------GTLLSTYNVK--PVSRNSTLEASFSPEGMFVISG  269 (332)
Q Consensus       202 ~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~--~~~~~~~~~v~~spdg~~l~sg  269 (332)
                      .....-...-.+|+++|..+.+...|..|..|++..          ...+..+..+  ++|...+...+|+|||+||+++
T Consensus       307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             ecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            000001123358999999999999999999999731          1233333222  3455555667899999999999


Q ss_pred             ---cCCC
Q 020021          270 ---SGDG  273 (332)
Q Consensus       270 ---s~Dg  273 (332)
                         |.|+
T Consensus       387 ~k~s~dr  393 (441)
T d1qnia2         387 SKFSKDR  393 (441)
T ss_dssp             ESCCGGG
T ss_pred             Ccccccc
Confidence               6665

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.25  E-value=3.3e-09  Score=93.52  Aligned_cols=257  Identities=10%  Similarity=0.054  Sum_probs=139.3

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeeeEEee-ecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (332)
Q Consensus        31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~  108 (332)
                      ......++-|+|+|++++|..+.. +.+..|.+.. +..+.... ........++++++++.++..+.+...+++..+.+
T Consensus        36 ~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          36 IPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             CCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence            345566778999999999887765 4577776653 33322211 11122344567777775544332222344444433


Q ss_pred             cC-Cce-----------EE-E----eecccccEEEEEecCCCCeEEEeeC-CCcEEEEeCCCceEEEEEEecCceeEEEc
Q 020021          109 HD-NKY-----------LR-Y----FKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYD  170 (332)
Q Consensus       109 ~~-~~~-----------~~-~----~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~  170 (332)
                      .. +..           +. .    -+.....+.++.|+|+|++++.++. ...|.+|+...........          
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~----------  184 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG----------  184 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE----------
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc----------
Confidence            21 110           00 0    0111224678889999987776653 3356665543221110000          


Q ss_pred             CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEE-EEEcCCCeEEEEEccCCeEeEEee----
Q 020021          171 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYN----  245 (332)
Q Consensus       171 ~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~~~~~~~~~~----  245 (332)
                                                  .......-...+.++|+|||+++ ++...+++|.+||...++......    
T Consensus       185 ----------------------------~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~  236 (365)
T d1jofa_         185 ----------------------------SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             ----------------------------EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             ----------------------------ceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeee
Confidence                                        00000011245678999999876 556678999999986654321111    


Q ss_pred             -ecC-----------CCCCcceEEEECCCCCEEEEEcC------CCcEEEEECCCCceEEE------ecCCCCCCceEEe
Q 020021          246 -VKP-----------VSRNSTLEASFSPEGMFVISGSG------DGSVYAWSVRSGKEVAS------WMSFDTEPPVIKW  301 (332)
Q Consensus       246 -~~~-----------~~~~~~~~v~~spdg~~l~sgs~------Dg~i~vWd~~~~~~~~~------~~~~~~~v~~l~~  301 (332)
                       ...           ........+.++|||++|+++..      .+.|..|++.+...+..      ..........++|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~  316 (365)
T d1jofa_         237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             ccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEe
Confidence             000           00112346889999999988732      22477787765332221      1223456678999


Q ss_pred             CC-CeeEEEec-c--ceEEEecccccccc
Q 020021          302 TP-GSLMFVTG-S--SELSFWIPDLSKLG  326 (332)
Q Consensus       302 sp-~~~~l~t~-~--~d~~~w~~~~~~~~  326 (332)
                      +| +|++|..+ .  .++.+|..+...|.
T Consensus       317 ~p~~G~~l~va~~~s~~v~v~~~~~~~l~  345 (365)
T d1jofa_         317 CPWSDEWMAITDDQEGWLEIYRWKDEFLH  345 (365)
T ss_dssp             CTTCTTEEEEECSSSCEEEEEEEETTEEE
T ss_pred             cCCCCCEEEEEeCCCCeEEEEEEeCCcCc
Confidence            98 77755443 2  34999987765553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=4.1e-08  Score=82.86  Aligned_cols=237  Identities=10%  Similarity=0.154  Sum_probs=149.0

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeec------ccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~  109 (332)
                      ....|+++|+|+++++-...+.|++||.+ |+.+..+...      ......+++..+....++... +.++.+..++. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~i~~~~~-  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER-SPTHQIQIYNQ-  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC-GGGCEEEEECT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceecc-CCccccccccc-
Confidence            36799999999999988888999999965 6766665321      112234555555444444332 22456666665 


Q ss_pred             CCceEEEee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE
Q 020021          110 DNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD  188 (332)
Q Consensus       110 ~~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd  188 (332)
                      .++....+. ........+++.++++.+++....+.+.+++... +...                            -+.
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~----------------------------~~g  151 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH----------------------------KFG  151 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE----------------------------EEE
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceee----------------------------ccc
Confidence            344444442 3345566677777666665555444455444321 1111                            111


Q ss_pred             CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (332)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s  268 (332)
                      .             ..+......+++.++|.++++....+.|++||. .|+.+.++.. .........+++.|+|+.+++
T Consensus       152 ~-------------~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~-~g~~~~P~giavD~~G~i~Va  216 (279)
T d1q7fa_         152 C-------------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGG-EGITNYPIGVGINSNGEILIA  216 (279)
T ss_dssp             C-------------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESC-TTTSCSEEEEEECTTCCEEEE
T ss_pred             c-------------cccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecc-cccccCCcccccccCCeEEEE
Confidence            0             112234466889999999999999999999996 4666665532 223345568999999998877


Q ss_pred             EcC-CCcEEEEECCCCceEEEecCC--CCCCceEEeCCCeeEEEeccc-eEEEecc
Q 020021          269 GSG-DGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLMFVTGSS-ELSFWIP  320 (332)
Q Consensus       269 gs~-Dg~i~vWd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~t~~~-d~~~w~~  320 (332)
                      -+. ++.|.+++ .+++.+.++...  ......|++.|||+++++... .+++|..
T Consensus       217 d~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~  271 (279)
T d1q7fa_         217 DNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRY  271 (279)
T ss_dssp             ECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEEC
T ss_pred             ECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEe
Confidence            543 45799998 468877766432  234678999999988776543 2777765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.15  E-value=5.5e-08  Score=83.64  Aligned_cols=259  Identities=10%  Similarity=0.091  Sum_probs=146.0

Q ss_pred             EEEEEECCCCCEEEEEeC-------CCcEEEEEcCCCeeeEEeeec----ccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           37 ISSMDFHKSSSYLVTASD-------DESIRLYDVTAATCLKTINSK----KYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        37 I~~i~~s~dg~~l~tgs~-------D~tv~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      ..+++|+|+|+++++...       +++|..||..++.........    ......++|.+++..++++..   .+.+..
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~---~~~i~~   96 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---RLGLLV   96 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---TTEEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC---CCeEEE
Confidence            456789999998876433       467888998887654332211    112456889999887776642   345777


Q ss_pred             EEccCCceEEEeeccc----ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021          106 LSLHDNKYLRYFKGHH----DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  181 (332)
Q Consensus       106 ~d~~~~~~~~~~~~h~----~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (332)
                      .+.+.+..........    ...+.+.+.++|+..+|-.. +....|+.....        .      .+.+.++....+
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~~~~--------~------~~~G~v~~~~~d  161 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYTRSM--------Q------EKFGSIYCFTTD  161 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCCBTT--------S------SSCEEEEEECTT
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCc-cCccccccccee--------c------cCCceEEEEeec
Confidence            7776543221111111    12466788888876665322 111111111000        0      011111111112


Q ss_pred             CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-----EEEEEcCCCeEEEEEccCCeEeEEee---e-cCCCCC
Q 020021          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-----LMLLTTMEGHIHVLDSFRGTLLSTYN---V-KPVSRN  252 (332)
Q Consensus       182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-----~l~~~~~dg~i~i~d~~~~~~~~~~~---~-~~~~~~  252 (332)
                      +.+....               ......+.++|+|++.     ++++-+..+.|+.||+.....+....   . ......
T Consensus       162 g~~~~~~---------------~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T d1pjxa_         162 GQMIQVD---------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             SCEEEEE---------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             CceeEee---------------CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc
Confidence            2111111               0011236788988774     66677888999999875432222111   1 111112


Q ss_pred             cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCee-EEEeccceEEEec--ccccccccc
Q 020021          253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSSELSFWI--PDLSKLGAY  328 (332)
Q Consensus       253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~t~~~d~~~w~--~~~~~~~~~  328 (332)
                      ..-.+++.++|+.+++....+.|.+||...++.+..+......+++++|.||++ +++|.+..-++|.  ++...+.++
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~~~  305 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKKQY  305 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCCCG
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCChhhh
Confidence            234689999999988887789999999887776665555455678999999985 6788766655554  444444433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.15  E-value=1.1e-07  Score=81.02  Aligned_cols=236  Identities=12%  Similarity=0.039  Sum_probs=148.3

Q ss_pred             ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (332)
Q Consensus        26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v  105 (332)
                      .+.+|.... .+..++++|||+++++...+++|..||....  ...+......+..++|.++++.+++...   ++.+..
T Consensus        20 v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~---~~~~~~   93 (302)
T d2p4oa1          20 IITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWN---ADSIPV   93 (302)
T ss_dssp             EEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEEC---TTSCEE
T ss_pred             EEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecC---CceEEE
Confidence            344454333 5889999999999999999999988886643  2334444456788999999986665543   456777


Q ss_pred             EEccCCc-eEEEee--cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC------------ceeEEEc
Q 020021          106 LSLHDNK-YLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG------------RPAAAYD  170 (332)
Q Consensus       106 ~d~~~~~-~~~~~~--~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~------------~~~~~~~  170 (332)
                      ++..... ....+.  ......+.+.+.++++.+++-+.++.+..+|...+..........            .....++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~  173 (302)
T d2p4oa1          94 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF  173 (302)
T ss_dssp             EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred             EEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc
Confidence            7654432 122221  234567889999999999999999999999887765433222110            0122233


Q ss_pred             CCCeEEEEEeCCEEEEEECccCCC-CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021          171 DQGLVFAVAFGGYIRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (332)
Q Consensus       171 ~~~~~~~~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (332)
                      ....+++....+.|..++...... .........   .....+++++||.++++...++.|..++.. ++........ .
T Consensus       174 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~-~  248 (302)
T d2p4oa1         174 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-Q  248 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-G
T ss_pred             CCceeeecCCCCeEEeccccccccccccccccCC---CCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecC-C
Confidence            333333333467888887654321 111111111   234579999999999988889999999875 4432222211 2


Q ss_pred             CCCcceEEEE---CCCCCEEEEEcCC
Q 020021          250 SRNSTLEASF---SPEGMFVISGSGD  272 (332)
Q Consensus       250 ~~~~~~~v~~---spdg~~l~sgs~D  272 (332)
                      .......++|   +||++.|+.++..
T Consensus       249 ~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         249 GVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCceEEEEcCCCCCCCEEEEECCC
Confidence            2344568999   7788888766543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.11  E-value=4.7e-08  Score=88.50  Aligned_cols=115  Identities=6%  Similarity=0.091  Sum_probs=91.5

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeec-----ccceeEEEEccCCCEEEEecC------CCCCceeEEEE
Q 020021           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-----KYGVDLVCFTSHPTTVIYSSK------NGWDESLRLLS  107 (332)
Q Consensus        39 ~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~s~------~g~d~~v~v~d  107 (332)
                      .+.|.+++.++..  .|+.+.+||+.+++....+..+     ...+..+.|+|+++.+++++.      ...++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            5679999987764  5788999999999887655433     356889999999999988752      01246788999


Q ss_pred             ccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE
Q 020021          108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  157 (332)
Q Consensus       108 ~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~  157 (332)
                      +++++ +..+..|.+.+..+.|+|||+.+|.. .|+.+.+|+..++....
T Consensus        99 ~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1          99 LNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             TTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred             CCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceee
Confidence            99876 45688899999999999999999985 56789999988776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.2e-07  Score=78.82  Aligned_cols=225  Identities=13%  Similarity=0.147  Sum_probs=124.8

Q ss_pred             eeEeccCCCcEEEEEECCCCCEEEEEeCCC---cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDE---SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (332)
Q Consensus        27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~---tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v  103 (332)
                      .+.+..+...+.+-+|||||+.||-...+.   .+.+.+..++... .+..+........+++++..++..+.......+
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~  109 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  109 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccce
Confidence            344445567788899999999998655443   3556666655543 334444556778899999988876542211222


Q ss_pred             EEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEe--CCCceEEEEEEecCceeEEEcCCCeEEEEEe
Q 020021          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWD--QRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF  180 (332)
Q Consensus       104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (332)
                      ..+......... ...+........++++++ .+++...++...+|.  .......                        
T Consensus       110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~------------------------  164 (269)
T d2hqsa1         110 YVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ------------------------  164 (269)
T ss_dssp             EEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE------------------------
T ss_pred             eeccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccce------------------------
Confidence            222222222222 222333333344555444 333334444433332  2111100                        


Q ss_pred             CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC---eEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~v  257 (332)
                                          .+...........+||||+.++..+.++   .+.+.|...+... ...    ........
T Consensus       165 --------------------~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~----~~~~~~~p  219 (269)
T d2hqsa1         165 --------------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS----STFLDETP  219 (269)
T ss_dssp             --------------------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC----CSSSCEEE
T ss_pred             --------------------eeecccccccccccccccceeEEEeecCCceeeeEeecccccce-Eee----cCccccce
Confidence                                0001112234457999999888776554   4555665554432 111    22334566


Q ss_pred             EECCCCCEEEEEcC---CCcEEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021          258 SFSPEGMFVISGSG---DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP  303 (332)
Q Consensus       258 ~~spdg~~l~sgs~---Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp  303 (332)
                      .|||||++|+-.+.   ...|+++++..+. ...+......+...+|||
T Consensus       220 ~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         220 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECC
T ss_pred             EECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCC
Confidence            89999999875543   3478999997554 455666666677788998

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.07  E-value=2e-06  Score=73.75  Aligned_cols=239  Identities=8%  Similarity=0.110  Sum_probs=140.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE--Ecc
Q 020021           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL--SLH  109 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~--d~~  109 (332)
                      .....+..+.|+++|++.++-...++|..||.++++....+.........+++.+++..+++.. .+......++  +..
T Consensus        37 ~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~-~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          37 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYL-GDFKSTGGIFAATEN  115 (319)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEEC-TTSSSCCEEEEECTT
T ss_pred             cCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEec-CCCccceeEEEEcCC
Confidence            3444567899999999888888899999999887766655554455667889999987555443 2333333344  444


Q ss_pred             CCceEEEeec--ccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEE
Q 020021          110 DNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF  187 (332)
Q Consensus       110 ~~~~~~~~~~--h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw  187 (332)
                      .+........  -......+.+.++|++.++-.....       .......        ..+.+++.        .++..
T Consensus       116 ~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~-------~~~~g~v--------~~~~~dg~--------~~~~~  172 (319)
T d2dg1a1         116 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS-------TNPLGGV--------YYVSPDFR--------TVTPI  172 (319)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-------TBCCEEE--------EEECTTSC--------CEEEE
T ss_pred             CceeeeeccCCCcccCCcceeEEeccceeeccccccc-------ccCccee--------EEEecccc--------eeEEE
Confidence            3333222221  1234677888888876665321110       0000000        00111110        11110


Q ss_pred             ECccCCCCCeeEEEecCCCCCceeEEEcCCCCE-EEEEcCCCeEEEEEccCC-eEeEEe----eecCCCCCcceEEEECC
Q 020021          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRG-TLLSTY----NVKPVSRNSTLEASFSP  261 (332)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~-l~~~~~dg~i~i~d~~~~-~~~~~~----~~~~~~~~~~~~v~~sp  261 (332)
                      .               ......+.++|+||++. +++-+..++|+.||+... ......    ..........-.+++.+
T Consensus       173 ~---------------~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~  237 (319)
T d2dg1a1         173 I---------------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS  237 (319)
T ss_dssp             E---------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT
T ss_pred             e---------------eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC
Confidence            0               00122467899999974 566788899999987532 211111    11111112234689999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEec------CCCCCCceEEeCCCeeEEEe
Q 020021          262 EGMFVISGSGDGSVYAWSVRSGKEVASWM------SFDTEPPVIKWTPGSLMFVT  310 (332)
Q Consensus       262 dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~------~~~~~v~~l~~sp~~~~l~t  310 (332)
                      +|++.++....+.|.++|- +++.+..+.      .+...+++++|.|++..+.+
T Consensus       238 ~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~  291 (319)
T d2dg1a1         238 DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII  291 (319)
T ss_dssp             TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred             CCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEE
Confidence            9999888888999999995 788877653      23335789999998755544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=1e-07  Score=79.49  Aligned_cols=232  Identities=9%  Similarity=0.059  Sum_probs=135.4

Q ss_pred             cEEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021           36 RISSMDFHKSSSYLVTA-SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tg-s~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~  114 (332)
                      .-.+|+++++|++.++. +..+.+..++...................+++.+++...++..   ....+++++-.+...+
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~---~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF---NNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEET---TTEEEEECTTCSCCEE
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeee---eeceeeeeeeccceee
Confidence            34789999999976654 4556677766553322211111122346678888876444332   1445655554444433


Q ss_pred             EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCC
Q 020021          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEK  194 (332)
Q Consensus       115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~  194 (332)
                      .... ......++++.++++.+++-.....+...+......                             ...       
T Consensus        92 ~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-----------------------------~~~-------  134 (260)
T d1rwia_          92 LPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-----------------------------TVL-------  134 (260)
T ss_dssp             CCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-----------------------------EEC-------
T ss_pred             eeee-eeeecccccccccceeEeecccccccccccccccee-----------------------------eee-------
Confidence            2222 234567788888777666544444444443322110                             000       


Q ss_pred             CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCc
Q 020021          195 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS  274 (332)
Q Consensus       195 ~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~  274 (332)
                            .. ........++++++|+++++...++.|..+|....... .+.  .........+++.++|+++++-...+.
T Consensus       135 ------~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~--~~~~~~p~gi~~d~~g~l~vsd~~~~~  204 (260)
T d1rwia_         135 ------PF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLP--FTDITAPWGIAVDEAGTVYVTEHNTNQ  204 (260)
T ss_dssp             ------CC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECC--CSSCCSEEEEEECTTCCEEEEETTTTE
T ss_pred             ------ee-cccCCcceeeecCCCCEeeeccccccccccccccceee-eee--ccccCCCccceeeeeeeeeeeecCCCE
Confidence                  00 00123457899999999999899999999997654332 221  122344567999999999998888888


Q ss_pred             EEEEECCCCceEEEec-CCCCCCceEEeCCCeeEEEeccceEEEe
Q 020021          275 VYAWSVRSGKEVASWM-SFDTEPPVIKWTPGSLMFVTGSSELSFW  318 (332)
Q Consensus       275 i~vWd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~t~~~d~~~w  318 (332)
                      |..++..... ...+. ..-..+..|++++++.++++-...-+++
T Consensus       205 i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~  248 (260)
T d1rwia_         205 VVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  248 (260)
T ss_dssp             EEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             EEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence            9988765433 22221 1123457899999999888865554444

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=1e-05  Score=66.62  Aligned_cols=219  Identities=12%  Similarity=0.113  Sum_probs=123.2

Q ss_pred             cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeE
Q 020021           57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF  136 (332)
Q Consensus        57 tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l  136 (332)
                      .|.|-|.+..+ ...+......+..-+|+|+|+.|++.+.......+.+.+...+.. ..+..+........|+|+++.+
T Consensus        20 ~l~i~d~dG~~-~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCC-cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCee
Confidence            46666766433 344444455567789999999999876544445566667666553 4555677888889999999988


Q ss_pred             EEeeCC-CcEEEEeC--CCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEE
Q 020021          137 ISGSLD-RTVLLWDQ--RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK  213 (332)
Q Consensus       137 ~s~s~D-g~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~  213 (332)
                      +..+.. +...++..  ........                                            ...........
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~  133 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQV--------------------------------------------TDGRSNNTEPT  133 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEEC--------------------------------------------CCCSSCEEEEE
T ss_pred             eEeeecCCccceeecccccccceee--------------------------------------------eeccccccccc
Confidence            765543 22222211  11000000                                            00001112234


Q ss_pred             EcCCCCEEEEE-cCCC--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC---cEEEEECCCCceEE
Q 020021          214 FSNDGRLMLLT-TMEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEVA  287 (332)
Q Consensus       214 ~s~dg~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg---~i~vWd~~~~~~~~  287 (332)
                      +++++..+... ..+|  .|...+...+.... ..   ..........++||+++++..+.++   .+.+.+...+.  .
T Consensus       134 ~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~---~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~  207 (269)
T d2hqsa1         134 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--V  207 (269)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC---CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--E
T ss_pred             cccccccceecccccCCceEeeeeccccccee-ee---cccccccccccccccceeEEEeecCCceeeeEeeccccc--c
Confidence            55555544433 3334  45555555443221 11   1223444568999999998886654   44444544443  2


Q ss_pred             EecCCCCCCceEEeCCCeeEEEeccc-----eEEEeccccccccc
Q 020021          288 SWMSFDTEPPVIKWTPGSLMFVTGSS-----ELSFWIPDLSKLGA  327 (332)
Q Consensus       288 ~~~~~~~~v~~l~~sp~~~~l~t~~~-----d~~~w~~~~~~~~~  327 (332)
                      .............|||||+.|+-.+.     ++.+++.+...+.+
T Consensus       208 ~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         208 QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            33445556677899999998765442     35666666655443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.76  E-value=4.6e-06  Score=72.76  Aligned_cols=180  Identities=10%  Similarity=0.110  Sum_probs=102.5

Q ss_pred             ceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEE---Eee--cccccEEEEEecCCCCeE-EEeeCCCcEEEEeCC
Q 020021           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR---YFK--GHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQR  151 (332)
Q Consensus        78 ~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~---~~~--~h~~~V~~v~~~~~~~~l-~s~s~Dg~i~iWd~~  151 (332)
                      .++.+.|+|++++++.+.. | ...|.+|+......+.   ...  ......+.+.|+|+++++ ++.-.+++|.+|++.
T Consensus       146 h~h~v~~sPdG~~l~v~d~-g-~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADL-T-ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECTTSSEEEEEET-T-TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECCCCCEEEEeeC-C-CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            3678999999999888763 3 4577888765432211   111  234567889999999977 555578899999986


Q ss_pred             CceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC-----
Q 020021          152 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-----  226 (332)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~-----  226 (332)
                      .++.........                    +.++..........    ..........+.++|||+++.++..     
T Consensus       224 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~----~~~~~~~~~~i~~spdG~~lyvsnr~~~~~  279 (365)
T d1jofa_         224 PATHMPVYTHHS--------------------FPLIPPGIPDRDPE----TGKGLYRADVCALTFSGKYMFASSRANKFE  279 (365)
T ss_dssp             TTTCCEEEEEEE--------------------EESSCTTCCCBCTT----TSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred             CCCceEEEEeee--------------------eccccccccccccc----cccccCCccceEECCCCCEEEEEcccCCCc
Confidence            554322211100                    00000000000000    0001112346789999998877632     


Q ss_pred             -CCeEEEEEccCC-eEeEE--eeecCCCCCcceEEEECC-CCCEEEEE-cCCCcEEEEECCCC
Q 020021          227 -EGHIHVLDSFRG-TLLST--YNVKPVSRNSTLEASFSP-EGMFVISG-SGDGSVYAWSVRSG  283 (332)
Q Consensus       227 -dg~i~i~d~~~~-~~~~~--~~~~~~~~~~~~~v~~sp-dg~~l~sg-s~Dg~i~vWd~~~~  283 (332)
                       .+.|..|+.... .+...  +............++|+| +|++|+.+ ..++.|.+|++...
T Consensus       280 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence             234777776542 22211  111112223445689998 89988766 56789999988654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.68  E-value=8.9e-06  Score=69.35  Aligned_cols=205  Identities=9%  Similarity=0.118  Sum_probs=118.2

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee---cc-cceeEEEEccCCCEEEEecCCC----------CCce
Q 020021           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS---KK-YGVDLVCFTSHPTTVIYSSKNG----------WDES  102 (332)
Q Consensus        37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~---~~-~~v~~~~~~~~~~~~~~~s~~g----------~d~~  102 (332)
                      -..+.|+++++.|+.+.....+...|.+.+........   .. .....+++.+++...++.....          ....
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            56799999999888888777888888875542211111   11 1245678888876544432110          0111


Q ss_pred             eEEEEccC-CceEEEeecccccEEEEEecCCCC-----eEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEE
Q 020021          103 LRLLSLHD-NKYLRYFKGHHDRVVSLSLCSSKD-----CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF  176 (332)
Q Consensus       103 v~v~d~~~-~~~~~~~~~h~~~V~~v~~~~~~~-----~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (332)
                      =++|-+.. ++.. .+......-++++|+++++     ..++-+..+.|..+|+.........                 
T Consensus       153 G~v~~~~~dg~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~-----------------  214 (314)
T d1pjxa_         153 GSIYCFTTDGQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-----------------  214 (314)
T ss_dssp             EEEEEECTTSCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-----------------
T ss_pred             ceEEEEeecCcee-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee-----------------
Confidence            13333322 2322 2223333446777777654     3444455566666554322111000                 


Q ss_pred             EEEeCCEEEEE-ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021          177 AVAFGGYIRMF-DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (332)
Q Consensus       177 ~~~~~~~i~vw-d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  255 (332)
                              +++ ++..            ........+++.++|+++++....+.|++||...++.+..+..   +.....
T Consensus       215 --------~~~~~~~~------------~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~---p~~~~t  271 (314)
T d1pjxa_         215 --------KVWGHIPG------------THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC---PFEKPS  271 (314)
T ss_dssp             --------EEEEECCC------------CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC---SSSCEE
T ss_pred             --------eEEEEccc------------cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC---CCCCEE
Confidence                    000 0000            0011224688999999999988899999999887776665553   234566


Q ss_pred             EEEECCCCC-EEEEEcCCCcEEEEECCC
Q 020021          256 EASFSPEGM-FVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       256 ~v~~spdg~-~l~sgs~Dg~i~vWd~~~  282 (332)
                      .++|.||++ .+++.+.+|+|+..++..
T Consensus       272 ~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         272 NLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            899999997 556667788888888743

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.66  E-value=2.5e-06  Score=72.42  Aligned_cols=198  Identities=12%  Similarity=0.052  Sum_probs=124.7

Q ss_pred             cEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEEe-CCEEEEEECccCCCCCeeEE
Q 020021          123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIF  200 (332)
Q Consensus       123 ~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~i~vwd~~~~~~~~~~~~  200 (332)
                      .+..+++.|||+.+++...+++|..||.... .......... ....+++++.++.+.. ++.+..|+....... ....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~-~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT-VETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-EEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc-eeec
Confidence            4778999999999999999999999986543 3333333333 3566778877666654 567777775443222 2222


Q ss_pred             EecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec-------CCCCCcceEEEECCCCCEEEEEcCCC
Q 020021          201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-------PVSRNSTLEASFSPEGMFVISGSGDG  273 (332)
Q Consensus       201 ~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~~~~~~v~~spdg~~l~sgs~Dg  273 (332)
                      .........+.+++.++|+++++.+.++.+..+|...+.........       .........+.++. +..+++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence            21122235678999999999999999999999998876543221110       00111223345543 34555567788


Q ss_pred             cEEEEECCCCceEEE--ecCCCCCCceEEeCCCeeEEEeccce--EEEeccccc
Q 020021          274 SVYAWSVRSGKEVAS--WMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS  323 (332)
Q Consensus       274 ~i~vWd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~  323 (332)
                      .|+.+++........  .......+..++|.++|+++++...+  +..++++.+
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            999998865433221  11123346779999999988876443  777777653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.55  E-value=5.3e-05  Score=63.07  Aligned_cols=196  Identities=11%  Similarity=0.178  Sum_probs=127.9

Q ss_pred             ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-------ce-eEE-EcCCCeEEEEEe--CCEEEEEECc
Q 020021          122 DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-------RP-AAA-YDDQGLVFAVAF--GGYIRMFDAR  190 (332)
Q Consensus       122 ~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-------~~-~~~-~~~~~~~~~~~~--~~~i~vwd~~  190 (332)
                      ..-..+++.++++.+++-.....|++||.+ ++....+....       .+ ... ....+..+....  ++.|..++..
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            345789999999988887778899999965 44444442211       11 122 223344443332  3567666643


Q ss_pred             cCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021          191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  270 (332)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs  270 (332)
                      -    .....-..........+++.++|.++++....+.+.+++.. ++.+..+... .+......+++.++|+.+++..
T Consensus       102 g----~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~-~~~~~~~~i~~d~~g~i~v~d~  175 (279)
T d1q7fa_         102 G----QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS-KHLEFPNGVVVNDKQEIFISDN  175 (279)
T ss_dssp             S----CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT-TTCSSEEEEEECSSSEEEEEEG
T ss_pred             c----cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccc-ccccccceeeeccceeEEeeec
Confidence            1    11111111122345678999999999998888999999854 6666655432 2344556789999999999999


Q ss_pred             CCCcEEEEECCCCceEEEecC--CCCCCceEEeCCCeeEEEeccc-e--EEEeccccccc
Q 020021          271 GDGSVYAWSVRSGKEVASWMS--FDTEPPVIKWTPGSLMFVTGSS-E--LSFWIPDLSKL  325 (332)
Q Consensus       271 ~Dg~i~vWd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~t~~~-d--~~~w~~~~~~~  325 (332)
                      ..+.|+++|. +++.+.++..  ....+..|++.|+|+++++... .  +.+++++..-+
T Consensus       176 ~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~  234 (279)
T d1q7fa_         176 RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLI  234 (279)
T ss_dssp             GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEE
T ss_pred             cccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEE
Confidence            9999999996 5677776632  2334678999999998887543 2  77777765433

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.53  E-value=6.8e-06  Score=68.00  Aligned_cols=194  Identities=8%  Similarity=0.073  Sum_probs=118.2

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY  116 (332)
Q Consensus        37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~  116 (332)
                      ...|+++++|+++++....+.+++++..+...+..... ......+++.+++...+.-..   +..+..++.........
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~---~~~~~~~~~~~~~~~~~  134 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRG---NNRVVKLAAGSKTQTVL  134 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGG---GTEEEEECTTCSSCEEC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccc---cccccccccccceeeee
Confidence            46789999999988888877777776555544433222 123567788887764443321   34455555444322221


Q ss_pred             eecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCC
Q 020021          117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGP  196 (332)
Q Consensus       117 ~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~  196 (332)
                      ...-.....++++.++++.+++...++.|..+|.........                             ..       
T Consensus       135 ~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~-----------------------------~~-------  178 (260)
T d1rwia_         135 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL-----------------------------PF-------  178 (260)
T ss_dssp             CCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC-----------------------------CC-------
T ss_pred             eecccCCcceeeecCCCCEeeeccccccccccccccceeeee-----------------------------ec-------
Confidence            112233456788888888888877777788877654321100                             00       


Q ss_pred             eeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEE
Q 020021          197 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY  276 (332)
Q Consensus       197 ~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~  276 (332)
                             ........+++.++|.++++....+.|..++..... ...+..  ........++++++|+.+++-..++.|+
T Consensus       179 -------~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~--~~~~~P~~i~~d~~g~l~vad~~~~rI~  248 (260)
T d1rwia_         179 -------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPF--TGLNTPLAVAVDSDRTVYVADRGNDRVV  248 (260)
T ss_dssp             -------SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCC--CSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             -------cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEcc--CCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence                   011223578999999999999889999988865432 222211  1223456799999998888766666666


Q ss_pred             EEEC
Q 020021          277 AWSV  280 (332)
Q Consensus       277 vWd~  280 (332)
                      ..+.
T Consensus       249 ~i~~  252 (260)
T d1rwia_         249 KLTS  252 (260)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            5543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=0.00011  Score=65.90  Aligned_cols=103  Identities=6%  Similarity=0.078  Sum_probs=70.2

Q ss_pred             cEEEEEECCCCCEEEEEe---------CCCcEEEEEcCCCeeeEEe--eecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021           36 RISSMDFHKSSSYLVTAS---------DDESIRLYDVTAATCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (332)
Q Consensus        36 ~I~~i~~s~dg~~l~tgs---------~D~tv~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~  104 (332)
                      .+....||||+++++-..         ..+.+.|||+.+++.....  ......+....|+|+|..+++..    ++.+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~----~~nl~  137 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF----ENNIY  137 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE----TTEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe----cceEE
Confidence            566778999999887653         4567889999987653322  22233345578999999998875    56788


Q ss_pred             EEEccCCceEEEee-cccccE-----------------EEEEecCCCCeEEEeeCC
Q 020021          105 LLSLHDNKYLRYFK-GHHDRV-----------------VSLSLCSSKDCFISGSLD  142 (332)
Q Consensus       105 v~d~~~~~~~~~~~-~h~~~V-----------------~~v~~~~~~~~l~s~s~D  142 (332)
                      +.+..++..++... +-.+.|                 .++-|||||++||....|
T Consensus       138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D  193 (465)
T d1xfda1         138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (465)
T ss_dssp             EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence            88877666544332 222222                 467799999999987643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.30  E-value=0.00034  Score=59.27  Aligned_cols=200  Identities=9%  Similarity=0.100  Sum_probs=117.1

Q ss_pred             cEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe-cC-ceeEEEcCCCeEEEEEeC-----CEEEEEECccCCCC
Q 020021          123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QG-RPAAAYDDQGLVFAVAFG-----GYIRMFDARKYEKG  195 (332)
Q Consensus       123 ~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~-----~~i~vwd~~~~~~~  195 (332)
                      .+.+++|.++|+..++-...+.|..||...+.....+.. .. .....+++++.++.+...     +.+...+.....  
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~--  118 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN--  118 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS--
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce--
Confidence            446889999999877777889999999877654443322 12 234566777776655432     233333332211  


Q ss_pred             CeeEEEecCCCCCceeEEEcCCCCEEEEEcC------CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEE-EE
Q 020021          196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTM------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV-IS  268 (332)
Q Consensus       196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l-~s  268 (332)
                      ..............+.+++.++|+++++...      .+.+..++...... ..+..   .-.....++|+||++.| ++
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~---~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQ---NISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEE---EESSEEEEEECTTSSEEEEE
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-EEEee---ccceeeeeeeccccceEEEe
Confidence            1111111111234577899999998776533      23466666543332 22211   11233468999999865 45


Q ss_pred             EcCCCcEEEEECCCC-ceEEE-------ecCCCCCCceEEeCCCeeEEEec--cceEEEecccccccccc
Q 020021          269 GSGDGSVYAWSVRSG-KEVAS-------WMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDLSKLGAY  328 (332)
Q Consensus       269 gs~Dg~i~vWd~~~~-~~~~~-------~~~~~~~v~~l~~sp~~~~l~t~--~~d~~~w~~~~~~~~~~  328 (332)
                      -+..+.|+.|++... .....       ..........+++.++|++.++.  ...+..++++.+.+..+
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i  264 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQI  264 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEE
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEE
Confidence            577889999998542 21111       11111224569999999888774  34588899887766654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.09  E-value=0.0016  Score=52.99  Aligned_cols=97  Identities=9%  Similarity=0.025  Sum_probs=63.5

Q ss_pred             ECCC--CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecC-CCCC--ceeEEEEccCCceEEE
Q 020021           42 FHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-NGWD--ESLRLLSLHDNKYLRY  116 (332)
Q Consensus        42 ~s~d--g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~-~g~d--~~v~v~d~~~~~~~~~  116 (332)
                      .|||  |+.+|-.+. +.|-+.|+.+++.. .+..+...+...+|+|+|+.+++... .+.+  ..+.+.+..+++....
T Consensus         6 ~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            4788  988876543 45777798887754 45555555677899999999987643 2222  3466677777765432


Q ss_pred             ee------cccccEEEEEecCCCCeEEEee
Q 020021          117 FK------GHHDRVVSLSLCSSKDCFISGS  140 (332)
Q Consensus       117 ~~------~h~~~V~~v~~~~~~~~l~s~s  140 (332)
                      ..      ..........|+|+++.++...
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEE
Confidence            21      1223346678999999887653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=0.00039  Score=62.18  Aligned_cols=253  Identities=12%  Similarity=0.141  Sum_probs=133.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc-cc-----------------eeEEEEccCCCEEEEecC
Q 020021           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-YG-----------------VDLVCFTSHPTTVIYSSK   96 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~-~~-----------------v~~~~~~~~~~~~~~~s~   96 (332)
                      +.+.-..|||||+.||=.. ++.|.+.+..++..++...... ..                 -..+-|+|+++.+++...
T Consensus       114 ~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         114 AKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             CCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             cccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            4455578999999987765 6678888887766554332211 11                 135668999999887632


Q ss_pred             CCC-------------------------------CceeEEEEccCCceEEEe------ecccccEEEEEecCCCCeEEEe
Q 020021           97 NGW-------------------------------DESLRLLSLHDNKYLRYF------KGHHDRVVSLSLCSSKDCFISG  139 (332)
Q Consensus        97 ~g~-------------------------------d~~v~v~d~~~~~~~~~~------~~h~~~V~~v~~~~~~~~l~s~  139 (332)
                      +..                               ...+.++|++++......      ......+..+.|+++++.++..
T Consensus       193 D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~  272 (465)
T d1xfda1         193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW  272 (465)
T ss_dssp             ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred             cccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEE
Confidence            100                               013556677665432211      1233357889999998866554


Q ss_pred             -eCC---CcEEEEeCCCceEEEEEEecC-------ceeEEEcCCCe-E-EE-EE-eC--CEEEEEECccC----CCCCee
Q 020021          140 -SLD---RTVLLWDQRAEKCQGLLRVQG-------RPAAAYDDQGL-V-FA-VA-FG--GYIRMFDARKY----EKGPFD  198 (332)
Q Consensus       140 -s~D---g~i~iWd~~~~~~~~~~~~~~-------~~~~~~~~~~~-~-~~-~~-~~--~~i~vwd~~~~----~~~~~~  198 (332)
                       .++   ..+.++|..++++...+....       .....+.+++. + +. .. .+  +.+...++...    ......
T Consensus       273 ~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~  352 (465)
T d1xfda1         273 LNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ  352 (465)
T ss_dssp             EETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC
T ss_pred             EccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeE
Confidence             333   257888999988766554321       12234445443 2 22 12 12  23333322110    000000


Q ss_pred             EEEecCCCCCcee-EEEcCCCCEEE-EEcCC----CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC-
Q 020021          199 IFSVGGDISDANV-VKFSNDGRLML-LTTME----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-  271 (332)
Q Consensus       199 ~~~~~~~~~~v~~-v~~s~dg~~l~-~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~-  271 (332)
                      .+. .|. -.|.. +++++++..+. ++..+    .+++-.++..+.....+............+.||||+++++-... 
T Consensus       353 ~LT-~G~-w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         353 SIT-SGD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG  430 (465)
T ss_dssp             BSC-CSS-SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             Eec-cCC-ceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeec
Confidence            000 111 12333 46888776554 44433    24555554433222211111112223457899999999984433 


Q ss_pred             --CCcEEEEECCCCceEEEec
Q 020021          272 --DGSVYAWSVRSGKEVASWM  290 (332)
Q Consensus       272 --Dg~i~vWd~~~~~~~~~~~  290 (332)
                        --.+++++..+++.+..+.
T Consensus       431 ~~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         431 PGVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             SSSCCEEEEETTTCCEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEc
Confidence              2478888888888777663

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.08  E-value=0.0019  Score=53.76  Aligned_cols=220  Identities=11%  Similarity=0.051  Sum_probs=136.9

Q ss_pred             EEEECCC-CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEe
Q 020021           39 SMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (332)
Q Consensus        39 ~i~~s~d-g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~  117 (332)
                      +..|+++ +.+..+=-..++|.-||..+++.. .+. ....+..+++.+++..++.+     ..-+.++|.++++.....
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~-----~~gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-----DDGLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-----TTEEEEEETTTCCEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEE-----eCccEEeecccceeeEEe
Confidence            4557764 555566556788999999887653 222 23356677888877555543     235888999888754332


Q ss_pred             e--c--ccccEEEEEecCCCCeEEEeeCC----CcEEEEeCCCceEEEEEE-ecCceeEEEcCCCeEEEEE--eCCEEEE
Q 020021          118 K--G--HHDRVVSLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVA--FGGYIRM  186 (332)
Q Consensus       118 ~--~--h~~~V~~v~~~~~~~~l~s~s~D----g~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~i~v  186 (332)
                      .  .  ....++.+.+.|+|++.++...+    +.-.+|.+..++...... ....+...+++++..+..+  ..+.|..
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeE
Confidence            2  1  22357888899999876664322    234566655555443332 2233455666666543333  3578888


Q ss_pred             EECccCC----CCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC-C
Q 020021          187 FDARKYE----KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-P  261 (332)
Q Consensus       187 wd~~~~~----~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s-p  261 (332)
                      +++....    ..+.......+.......+++..+|.+.++.-..+.|..||. .|+++..+..   ....+++++|- |
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l---P~~~~T~~~FGG~  250 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV---PGKQTTCPAFIGP  250 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC---SCSBEEEEEEEST
T ss_pred             eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC---CCCceEEEEEeCC
Confidence            8764221    112222232233344577899999999998888899999995 5888888774   33457788995 7


Q ss_pred             CCCEEEEE
Q 020021          262 EGMFVISG  269 (332)
Q Consensus       262 dg~~l~sg  269 (332)
                      |.+.|+..
T Consensus       251 d~~~LyvT  258 (295)
T d2ghsa1         251 DASRLLVT  258 (295)
T ss_dssp             TSCEEEEE
T ss_pred             CCCEEEEE
Confidence            87666543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.99  E-value=0.003  Score=52.56  Aligned_cols=217  Identities=16%  Similarity=0.156  Sum_probs=126.6

Q ss_pred             EEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec
Q 020021           83 CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ  162 (332)
Q Consensus        83 ~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  162 (332)
                      .|.+....+++...  ..+.|..||.++++.. .+ .....+.++.+.++++++++ +.+ -+..+|..+++........
T Consensus        24 ~wd~~~~~l~wvDi--~~~~I~r~d~~~g~~~-~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          24 TFDPASGTAWWFNI--LERELHELHLASGRKT-VH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEETTTTEEEEEEG--GGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             eEECCCCEEEEEEC--CCCEEEEEECCCCeEE-EE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            34444444444321  2456777888776543 22 23346788888888877665 455 4788898888754333221


Q ss_pred             C------ceeEEEcCCCeEEEEEeC-----CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEE-EEEcCCCeE
Q 020021          163 G------RPAAAYDDQGLVFAVAFG-----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHI  230 (332)
Q Consensus       163 ~------~~~~~~~~~~~~~~~~~~-----~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l-~~~~~dg~i  230 (332)
                      .      .+....++++.+..+...     +.-.+|.+...   ......  ......+.++++++++.+ ++-+..+.|
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g---~~~~~~--~~~~~~Ng~~~s~d~~~l~~~dt~~~~I  172 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG---KVTKLF--ADISIPNSICFSPDGTTGYFVDTKVNRL  172 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT---EEEEEE--EEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC---cEEEEe--eccCCcceeeecCCCceEEEeeccccee
Confidence            1      123456677766655431     22334433221   111111  112345788999999854 556778899


Q ss_pred             EEEEccCC--eEe---EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeC-CC
Q 020021          231 HVLDSFRG--TLL---STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PG  304 (332)
Q Consensus       231 ~i~d~~~~--~~~---~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~s-p~  304 (332)
                      +.+++...  ...   ..+..........-.+++.++|++.++.-..+.|..||. +++.+..+..-...+++++|- ||
T Consensus       173 ~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d  251 (295)
T d2ghsa1         173 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD  251 (295)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred             eEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCC
Confidence            99886421  111   111111122234456889999998888777789999995 688877765444568999994 66


Q ss_pred             e-eEEEec
Q 020021          305 S-LMFVTG  311 (332)
Q Consensus       305 ~-~~l~t~  311 (332)
                      . .+++|.
T Consensus       252 ~~~LyvTt  259 (295)
T d2ghsa1         252 ASRLLVTS  259 (295)
T ss_dssp             SCEEEEEE
T ss_pred             CCEEEEEE
Confidence            5 455653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.81  E-value=0.0027  Score=51.43  Aligned_cols=204  Identities=9%  Similarity=0.120  Sum_probs=99.5

Q ss_pred             eEeccCCCcEEEEEECCCCCEEEEEeC-CC-----cEEEEEcCCCeeeEEeee------cccceeEEEEccCCCEEEEec
Q 020021           28 MSFRDYNGRISSMDFHKSSSYLVTASD-DE-----SIRLYDVTAATCLKTINS------KKYGVDLVCFTSHPTTVIYSS   95 (332)
Q Consensus        28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~-D~-----tv~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~s   95 (332)
                      +.|..+.+.+...+|||||++||-... ++     .|.+++..+++..+....      .........|+|+++.+++..
T Consensus        34 ~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          34 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            456777788999999999999875432 22     366677777766543211      112345678999999888764


Q ss_pred             CCCC---CceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCc-----------EEEEeCCCceEEEEEEe
Q 020021           96 KNGW---DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT-----------VLLWDQRAEKCQGLLRV  161 (332)
Q Consensus        96 ~~g~---d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~-----------i~iWd~~~~~~~~~~~~  161 (332)
                      ....   ...+...+...+.......   .......+.+.+..+.....+..           .................
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (281)
T d1k32a2         114 AMQPFSSMTCLYRVENDGINFVPLNL---GPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM  190 (281)
T ss_dssp             TTSSSTTCCEEEEEEGGGTEEEECCS---CSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred             ccCCCccceeeeeecCCCceeEEecC---CccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCC
Confidence            3221   1234445555544332222   12222223333333333322211           11111111111111111


Q ss_pred             cCc-eeEEEcCCCeEEEEEeC--CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC
Q 020021          162 QGR-PAAAYDDQGLVFAVAFG--GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  238 (332)
Q Consensus       162 ~~~-~~~~~~~~~~~~~~~~~--~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~  238 (332)
                      ... .......+..++....+  ..|.++|+.....   ..+.  . ........+||||+.|+. ..++.|+++|+.++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~---~~lt--~-~~~~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g  263 (281)
T d1k32a2         191 STHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL---RKHT--S-FTDYYPRHLNTDGRRILF-SKGGSIYIFNPDTE  263 (281)
T ss_dssp             SSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC---EECC--C-CCSSCEEEEEESSSCEEE-EETTEEEEECTTTC
T ss_pred             ccccceeeeeccccceecccccccceEEEeCCCCce---EEee--c-CCCcccccCcCCCCEEEE-EeCCEEEEEECCCC
Confidence            111 11122222222222222  3566667654322   1111  1 112334478999998776 45688999999887


Q ss_pred             eEe
Q 020021          239 TLL  241 (332)
Q Consensus       239 ~~~  241 (332)
                      +..
T Consensus       264 ~~~  266 (281)
T d1k32a2         264 KIE  266 (281)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.58  E-value=0.014  Score=50.38  Aligned_cols=67  Identities=10%  Similarity=0.096  Sum_probs=45.6

Q ss_pred             eEEEECCCCCEEEEE-cCCCcEEEEECCCCc-----------eEEEecCCCCCCceEEeCCCeeEEEe--ccceEEEecc
Q 020021          255 LEASFSPEGMFVISG-SGDGSVYAWSVRSGK-----------EVASWMSFDTEPPVIKWTPGSLMFVT--GSSELSFWIP  320 (332)
Q Consensus       255 ~~v~~spdg~~l~sg-s~Dg~i~vWd~~~~~-----------~~~~~~~~~~~v~~l~~sp~~~~l~t--~~~d~~~w~~  320 (332)
                      ..+.++|||+|++.+ ..+.++.|.|+++-.           .+..-....-...+.+|...|....|  -++.+--|+.
T Consensus       278 HGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         278 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             CceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEec
Confidence            358999999998877 457899999996411           11111223334577889999877777  3556777876


Q ss_pred             c
Q 020021          321 D  321 (332)
Q Consensus       321 ~  321 (332)
                      +
T Consensus       358 ~  358 (459)
T d1fwxa2         358 E  358 (459)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.054  Score=43.77  Aligned_cols=232  Identities=8%  Similarity=-0.005  Sum_probs=130.0

Q ss_pred             HhcccceeEeccCCCcEEEEEECCCCCEEEE-EeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021           21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVT-ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (332)
Q Consensus        21 ~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~t-gs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~   99 (332)
                      +........+..+...+.+|+|++..+.|.- -..++.|+..+++.+.....+......+..+++..-+..++++..  .
T Consensus        22 ~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~--~   99 (263)
T d1npea_          22 MKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS--Q   99 (263)
T ss_dssp             BCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET--T
T ss_pred             ccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEecc--C
Confidence            3334444456666667889999987766654 455677888888765544444333345677888877778877753  2


Q ss_pred             CceeEEEEccCCceEEEeecccccEEEEEecCCCCeEE-EeeCCCcEEEEe--CCCceEEEEEEecCceeEEEcCCCeEE
Q 020021          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWD--QRAEKCQGLLRVQGRPAAAYDDQGLVF  176 (332)
Q Consensus       100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~-s~s~Dg~i~iWd--~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (332)
                      .+.|.+.++........+.........+++.|...++. +-...+.-+||.  +.....                     
T Consensus       100 ~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~---------------------  158 (263)
T d1npea_         100 LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---------------------  158 (263)
T ss_dssp             TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---------------------
T ss_pred             CCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc---------------------
Confidence            56788888876544333344446678888887554433 322212222321  111000                     


Q ss_pred             EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEE-EEEcCCCeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (332)
Q Consensus       177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  255 (332)
                             ..+.               .......+.+++.+.+..+ .+-...+.|...|+........+..   . ....
T Consensus       159 -------~~i~---------------~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~---~-~~P~  212 (263)
T d1npea_         159 -------RILA---------------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---L-QYPF  212 (263)
T ss_dssp             -------EEEE---------------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---C-CSEE
T ss_pred             -------eeee---------------eecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC---C-CCcE
Confidence                   0000               0011233578887766655 4445678898888764433222221   1 1234


Q ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC-CCCceEEeC
Q 020021          256 EASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD-TEPPVIKWT  302 (332)
Q Consensus       256 ~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~-~~v~~l~~s  302 (332)
                      .+++. +++...+=...+.|...|..+++.+..+..+. ..+..++..
T Consensus       213 ~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~  259 (263)
T d1npea_         213 AVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA  259 (263)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred             EEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEe
Confidence            56664 34444554567889999998888776654332 334455543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.92  E-value=0.0039  Score=53.98  Aligned_cols=235  Identities=13%  Similarity=0.144  Sum_probs=124.4

Q ss_pred             EEEEC---CCCCEEEEEe-CCCcEEEEEcCCCeeeEEeeec-ccceeEEEEccCCC--EEEEecCC-------C------
Q 020021           39 SMDFH---KSSSYLVTAS-DDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPT--TVIYSSKN-------G------   98 (332)
Q Consensus        39 ~i~~s---~dg~~l~tgs-~D~tv~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~~~~s~~-------g------   98 (332)
                      .++|.   +||++|+... .+.+|-+-|+.+.++.+.+.-. ...++.++....++  +++..+..       |      
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            66775   4888876554 7788999999999987654332 23455555544443  44433210       0      


Q ss_pred             --CCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC--cEEEEeCCCceEEEEE--EecCceeEEEcCC
Q 020021           99 --WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLL--RVQGRPAAAYDDQ  172 (332)
Q Consensus        99 --~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg--~i~iWd~~~~~~~~~~--~~~~~~~~~~~~~  172 (332)
                        +.+.+.+.|.++++......- ......++++++|+++++.+.+.  .+.+-++.........  ..+....  +.++
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~--av~~  245 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--AIAA  245 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--HHHH
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHH--hhhc
Confidence              113456778887765443321 12345688899999888776532  2222222222111111  0000000  0011


Q ss_pred             CeEEEEEeCCEEEEEECccCCCCCee-EEEecCCCCCceeEEEcCCCCEEEEE-cCCCeEEEEEccCCeEe--------E
Q 020021          173 GLVFAVAFGGYIRMFDARKYEKGPFD-IFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLL--------S  242 (332)
Q Consensus       173 ~~~~~~~~~~~i~vwd~~~~~~~~~~-~~~~~~~~~~v~~v~~s~dg~~l~~~-~~dg~i~i~d~~~~~~~--------~  242 (332)
                      +.+-   .-+.+.+.|.+......+. .....   .....+.+||||++++++ ..+.++.++|..+-...        .
T Consensus       246 Gk~~---eingV~VVD~~~~~~~~v~~yIPVp---KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~  319 (459)
T d1fwxa2         246 GDYQ---ELNGVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  319 (459)
T ss_dssp             TCSE---EETTEEEEECSGG--CSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGG
T ss_pred             CCcE---EeCCceeecccccCCcceeEEEecC---CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccc
Confidence            1110   0134567776653222222 22322   234678999999988765 57889999998531100        0


Q ss_pred             EeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021          243 TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS  282 (332)
Q Consensus       243 ~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~  282 (332)
                      .....+...-...-.+|+..|.-.-|-=-|..|--|++..
T Consensus       320 ~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         320 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cEEeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            0011111111223468988886666667899999999853

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.57  E-value=0.095  Score=47.40  Aligned_cols=77  Identities=12%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCC-ceEEeCCCee
Q 020021          228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSL  306 (332)
Q Consensus       228 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v-~~l~~sp~~~  306 (332)
                      |.+..||+.+|+.+=.+....-...    =..+-.|..+++|+.||.++.+|..+|+.+.++..-.+.. .=+.|..||+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~g----g~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNG----GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCC----CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCC----ceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            4688899999887644432211111    1233478899999999999999999999998764322111 1266777886


Q ss_pred             EE
Q 020021          307 MF  308 (332)
Q Consensus       307 ~l  308 (332)
                      +.
T Consensus       533 QY  534 (573)
T d1kb0a2         533 QY  534 (573)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.38  E-value=0.32  Score=43.72  Aligned_cols=77  Identities=18%  Similarity=0.158  Sum_probs=49.6

Q ss_pred             CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC-CCCceEEeCCCee
Q 020021          228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSL  306 (332)
Q Consensus       228 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~-~~v~~l~~sp~~~  306 (332)
                      |.+..+|+.+|+.+=...........    ..+..+..++.|+.||.++.+|.++|+.+.++..-. ..-.-+.|..||+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g----~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGG----TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSB----CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcc----eeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            57888999998876443321111111    122356688889999999999999999997764222 1122377777887


Q ss_pred             EE
Q 020021          307 MF  308 (332)
Q Consensus       307 ~l  308 (332)
                      +.
T Consensus       520 qY  521 (571)
T d2ad6a1         520 QY  521 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.30  E-value=0.24  Score=41.46  Aligned_cols=233  Identities=12%  Similarity=0.139  Sum_probs=117.6

Q ss_pred             EEEEECCCCCEEEEEeCC-CcEEEEEcCCCeeeEEeeec-ccceeEEEEccCCCEEEEecCCC---CCceeEEEEccCCc
Q 020021           38 SSMDFHKSSSYLVTASDD-ESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNG---WDESLRLLSLHDNK  112 (332)
Q Consensus        38 ~~i~~s~dg~~l~tgs~D-~tv~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g---~d~~v~v~d~~~~~  112 (332)
                      .+..+.++|.+++.|+.+ .++.+||..+..-...-... ...-..++...++..++.+....   .-+.+.+||..+.+
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            355788999999998876 68999999876543221111 11124566677887777654211   12468889987765


Q ss_pred             eEEEe---------eccccc-----EEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC----------ceeEE
Q 020021          113 YLRYF---------KGHHDR-----VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----------RPAAA  168 (332)
Q Consensus       113 ~~~~~---------~~h~~~-----V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~----------~~~~~  168 (332)
                      -...-         ..+...     -..+..-++++.++.++.+..+.+.|..+...........          ...+.
T Consensus       159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (387)
T d1k3ia3         159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  238 (387)
T ss_dssp             EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence            32110         001000     0111223467777888777777777776655432221110          01111


Q ss_pred             E-cCCCeEEEEE-eC--------CEEEEEECccCCCCCeeEEEecC--CCCCceeEEEcCCCCEEEEEcCCC--------
Q 020021          169 Y-DDQGLVFAVA-FG--------GYIRMFDARKYEKGPFDIFSVGG--DISDANVVKFSNDGRLMLLTTMEG--------  228 (332)
Q Consensus       169 ~-~~~~~~~~~~-~~--------~~i~vwd~~~~~~~~~~~~~~~~--~~~~v~~v~~s~dg~~l~~~~~dg--------  228 (332)
                      . ..++.++..+ ..        ....+.++...............  ....-...+..+||++++.++.+.        
T Consensus       239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~  318 (387)
T d1k3ia3         239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST  318 (387)
T ss_dssp             EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred             eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence            1 1234433333 21        12233333222111111111110  011123456678999999988531        


Q ss_pred             ---eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC
Q 020021          229 ---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  271 (332)
Q Consensus       229 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~  271 (332)
                         .+.+||..+.+-.. +...+..+..-....+.+||+.++.|+.
T Consensus       319 ~~~~ve~Ydp~~~~W~~-~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         319 PVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             BCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EeceEEEEECCCCeEEE-CCCCCCcccceEEEEECCCCEEEEEeCC
Confidence               47889987765322 1111111111123456899999999874

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.26  E-value=0.3  Score=42.11  Aligned_cols=247  Identities=13%  Similarity=0.151  Sum_probs=121.9

Q ss_pred             cCCCcEEEEEECCCCCEEE-EEeCC----CcEEEEEcCCCeeeEE-eeecccceeEEEEccCCCEEEEecCC--------
Q 020021           32 DYNGRISSMDFHKSSSYLV-TASDD----ESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKN--------   97 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~-tgs~D----~tv~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~--------   97 (332)
                      ++.-.+...++|||++++| +-+..    .++++.|+.+++.+.. +..  .....++|.+++..+++....        
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccc
Confidence            3444456778899999886 32222    4899999999987642 222  122457899999988876421        


Q ss_pred             -----CCCceeEEEEccCCce--EEEeeccc--ccEEEEEecCCCCeEEEe---eCCCcEEEE--eCCCceE--------
Q 020021           98 -----GWDESLRLLSLHDNKY--LRYFKGHH--DRVVSLSLCSSKDCFISG---SLDRTVLLW--DQRAEKC--------  155 (332)
Q Consensus        98 -----g~d~~v~v~d~~~~~~--~~~~~~h~--~~V~~v~~~~~~~~l~s~---s~Dg~i~iW--d~~~~~~--------  155 (332)
                           +....+..+.+.+...  ...+....  ..+..+..++++++++..   +.+....+|  |......        
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  279 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence                 1123567777766432  33444433  346677788899876532   234444555  3322110        


Q ss_pred             EEEEEe-cCceeEEEcCCCeEEEEEe----CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE-cCCC-
Q 020021          156 QGLLRV-QGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEG-  228 (332)
Q Consensus       156 ~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~-~~dg-  228 (332)
                      ...+.. ........+.++.++....    ++.|...++..........+ +..+...+..-.++..+.+++.. ..++ 
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~v-i~~~~~~~~~~~~~~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL-VPEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (430)
T ss_dssp             EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEE-ECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             eEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEE-ecccCcceeeeEEEEECCEEEEEEEcCCE
Confidence            011100 0000111122233333332    24555555544322221211 11122223333444444555544 4444 


Q ss_pred             -eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEE-EEcC---CCcEEEEECCCCc
Q 020021          229 -HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI-SGSG---DGSVYAWSVRSGK  284 (332)
Q Consensus       229 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~-sgs~---Dg~i~vWd~~~~~  284 (332)
                       .|++++...+.......   .....+..+...++...+. +.+.   =.+++-+|+.+++
T Consensus       359 ~~l~v~~~~~~~~~~~~~---~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         359 NTLQLHDLATGALLKIFP---LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEEEETTTCCEEEEEC---CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             eEEEEEECCCCcEEEecC---CCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence             68889988776543321   1223333333334443332 2221   1467778887764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.14  E-value=0.045  Score=46.30  Aligned_cols=113  Identities=13%  Similarity=0.131  Sum_probs=72.1

Q ss_pred             eeEEEcCCCCEEEEEcCCC-----------eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-CcEEE
Q 020021          210 NVVKFSNDGRLMLLTTMEG-----------HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-GSVYA  277 (332)
Q Consensus       210 ~~v~~s~dg~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-g~i~v  277 (332)
                      ...+...+|++++.++.+.           .+.+||..+++-.........+...+...++.+||+.++.|+.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            3455667888888877421           37789998875432111111222334467889999999999766 58999


Q ss_pred             EECCCCceEEEe-cCCCCCCceEEeCCCeeEEEeccc--------eEEEecccc
Q 020021          278 WSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSS--------ELSFWIPDL  322 (332)
Q Consensus       278 Wd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~~--------d~~~w~~~~  322 (332)
                      ||..+....... +.....-...+..+|++.++.++.        ++.+|++..
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            999876653321 112222345677889999888763        467776654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.81  E-value=0.34  Score=43.70  Aligned_cols=76  Identities=22%  Similarity=0.414  Sum_probs=52.0

Q ss_pred             CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCC-CceEEeCCCee
Q 020021          228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSL  306 (332)
Q Consensus       228 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~-v~~l~~sp~~~  306 (332)
                      |.+..+|+.+|+.+=.+...    .+...-..+..|..+++|+.||.++.+|.+||+.+.++..-... -.=+.|..+|+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~----~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCC----CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            67888999999876444321    11111123457788889999999999999999999877532221 12277878886


Q ss_pred             E
Q 020021          307 M  307 (332)
Q Consensus       307 ~  307 (332)
                      +
T Consensus       542 q  542 (582)
T d1flga_         542 Q  542 (582)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.79  E-value=0.61  Score=41.67  Aligned_cols=77  Identities=13%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCC-CceEEeCCCee
Q 020021          228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSL  306 (332)
Q Consensus       228 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~-v~~l~~sp~~~  306 (332)
                      |.+..+|+.+|+.+=.+........    -.++-.|..++.|+.||.++.+|..+|+.+.++..-... -.=+.|..||+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~g----g~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNG----GTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCC----CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCC----ceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            5788899999988755443211111    123346778889999999999999999999776432211 12266777886


Q ss_pred             EE
Q 020021          307 MF  308 (332)
Q Consensus       307 ~l  308 (332)
                      +.
T Consensus       514 qy  515 (560)
T d1kv9a2         514 QY  515 (560)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.74  E-value=0.67  Score=41.77  Aligned_cols=77  Identities=14%  Similarity=0.173  Sum_probs=50.4

Q ss_pred             CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCC-CceEEeCCCee
Q 020021          228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSL  306 (332)
Q Consensus       228 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~-v~~l~~sp~~~  306 (332)
                      |.+..||+.+|+.+=......    ....-.++..|..++.|+.||.++.+|..+|+.+.++..-.+. -.=+.|..||+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~----~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ceEEEEeCCCCceecccCCCC----CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCE
Confidence            578889999988753332211    1111122346788889999999999999999999876432211 12266777886


Q ss_pred             EE
Q 020021          307 MF  308 (332)
Q Consensus       307 ~l  308 (332)
                      +.
T Consensus       529 QY  530 (596)
T d1w6sa_         529 QY  530 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.79  E-value=0.81  Score=37.17  Aligned_cols=196  Identities=15%  Similarity=0.253  Sum_probs=119.2

Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC-CceEEEeecc
Q 020021           42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYLRYFKGH  120 (332)
Q Consensus        42 ~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~-~~~~~~~~~h  120 (332)
                      .+|..+.||--+ -.++.|+|+++.+.++.+..... |.--.|-.+. .+..-.    +..|.-|+++. .++.+.+..|
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~e~-VvfWkWis~~-~L~lVT----~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLN-TVALVT----DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEESSSS-EEEEEC----SSEEEEEESSSSCCCEEEEECC
T ss_pred             cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC-cEEEEecCCC-EEEEEc----CCceEEEcccCCCCchhhhhhc
Confidence            578888887655 56899999999998887766543 3333444333 333332    45799999954 3567777776


Q ss_pred             cc----cEEEEEecCCCCeEEEee---C----CCcEEEEeCCCceEEEEEEecCceeEEEc-----CCCeEEEEEe----
Q 020021          121 HD----RVVSLSLCSSKDCFISGS---L----DRTVLLWDQRAEKCQGLLRVQGRPAAAYD-----DQGLVFAVAF----  180 (332)
Q Consensus       121 ~~----~V~~v~~~~~~~~l~s~s---~----Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----  180 (332)
                      ..    .|..-..+++.++++-.|   .    .|.+.++..+.+... .+..+......+.     .+..+++-+.    
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ-~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-EECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc-cccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            54    577777788888665332   2    367788887654322 2221111111111     1223444332    


Q ss_pred             CCEEEEEECccCCC--CCeeE--EEecCCC---CC-ceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021          181 GGYIRMFDARKYEK--GPFDI--FSVGGDI---SD-ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (332)
Q Consensus       181 ~~~i~vwd~~~~~~--~~~~~--~~~~~~~---~~-v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (332)
                      .+++.+.++.....  .++..  ..+.-.+   .+ -.++.+|+.-.++..-+.-|.|+++|+.++.++...+
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR  294 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  294 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee
Confidence            26899998876322  22221  1111111   11 2457788888888889999999999999999887655

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=1.1  Score=35.67  Aligned_cols=213  Identities=8%  Similarity=0.036  Sum_probs=112.8

Q ss_pred             cCCCcEEEEEECCCCCEEEEE-eCCCcEEEEEcCCCe---eeEE-eeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021           32 DYNGRISSMDFHKSSSYLVTA-SDDESIRLYDVTAAT---CLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (332)
Q Consensus        32 ~h~~~I~~i~~s~dg~~l~tg-s~D~tv~iwd~~~~~---~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~  106 (332)
                      .....+.+|+|++..+.|.=. ..++.|.--+++...   ...+ +......+..+++...+..++++..  ..+.|.+.
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~--~~~~I~v~  104 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVA  104 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET--TTTEEEEE
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEec--CCCEEEeE
Confidence            344567789999877765443 345556555554211   1122 2222234567888887888888753  25688999


Q ss_pred             EccCCceEEEeecccccEEEEEecCCCC-eEEEe-eCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEE
Q 020021          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISG-SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI  184 (332)
Q Consensus       107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~-s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  184 (332)
                      ++........+........++++.|... .+++- +..+.|..-++.....                            .
T Consensus       105 ~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~----------------------------~  156 (266)
T d1ijqa1         105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----------------------------Y  156 (266)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----------------------------E
T ss_pred             ecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce----------------------------e
Confidence            9877665555555566778888887443 33332 1222222222211110                            0


Q ss_pred             EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEE-EcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCC
Q 020021          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (332)
Q Consensus       185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg  263 (332)
                      .++.               ......+.+++.+.+..+.. -...+.|...|+............ ........+++. ++
T Consensus       157 ~l~~---------------~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~-~~~~~p~~lav~-~~  219 (266)
T d1ijqa1         157 SLVT---------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVF-ED  219 (266)
T ss_dssp             EEEC---------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT-TTTSSEEEEEEE-TT
T ss_pred             cccc---------------cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCC-CcccccEEEEEE-CC
Confidence            1110               01122456788876654444 466788888887644332222211 111233455554 33


Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEecC
Q 020021          264 MFVISGSGDGSVYAWSVRSGKEVASWMS  291 (332)
Q Consensus       264 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~  291 (332)
                      ..+.+-..++.|+..+..++..+..+..
T Consensus       220 ~ly~td~~~~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         220 KVFWTDIINEAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             EEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             EEEEEECCCCeEEEEECCCCcceEEEEc
Confidence            4444445667788878777665554443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.09  E-value=1.3  Score=36.66  Aligned_cols=99  Identities=9%  Similarity=0.041  Sum_probs=55.9

Q ss_pred             CCEEEEEECccCCCCCeeE-EEecCC-CCCceeEEEcCCCCEEEEEcC---------------CCeEEEEEccCCeEeEE
Q 020021          181 GGYIRMFDARKYEKGPFDI-FSVGGD-ISDANVVKFSNDGRLMLLTTM---------------EGHIHVLDSFRGTLLST  243 (332)
Q Consensus       181 ~~~i~vwd~~~~~~~~~~~-~~~~~~-~~~v~~v~~s~dg~~l~~~~~---------------dg~i~i~d~~~~~~~~~  243 (332)
                      ..+|.+|++..... .+.. .++... ....+.+++..+|+++++...               -+...+|....++....
T Consensus       123 ~~~ieif~~~~~~~-~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~  201 (340)
T d1v04a_         123 SSTVEVFKFQEEEK-SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV  201 (340)
T ss_dssp             CCEEEEEEEETTTT-EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE
T ss_pred             CceeEEEEEeCCCC-eEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE
Confidence            35788887654321 1221 122222 235688899999998888421               12233444333332211


Q ss_pred             eeecCCCCCcceEEEECCCCCEEEEE-cCCCcEEEEECCCCc
Q 020021          244 YNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVYAWSVRSGK  284 (332)
Q Consensus       244 ~~~~~~~~~~~~~v~~spdg~~l~sg-s~Dg~i~vWd~~~~~  284 (332)
                      ..    .-.....++++||+++|+.+ +..+.|++|++....
T Consensus       202 ~~----~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         202 AE----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             EE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             cC----CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            11    11234579999999877666 667899999986543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.77  E-value=4.1  Score=36.15  Aligned_cols=54  Identities=15%  Similarity=0.270  Sum_probs=38.6

Q ss_pred             EcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEEE
Q 020021          214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG  269 (332)
Q Consensus       214 ~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sg  269 (332)
                      ++-.|.++.+++.||.++.+|..+|+.+=++..........  +.|..||+ |++..
T Consensus       493 lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G~qYv~i~  547 (582)
T d1flga_         493 LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGEQYLGVT  547 (582)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEE
T ss_pred             eEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEEEEEE
Confidence            34466777889999999999999999998777543222222  57778995 55443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.05  E-value=2.8  Score=32.97  Aligned_cols=165  Identities=7%  Similarity=-0.007  Sum_probs=94.8

Q ss_pred             CcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021           35 GRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (332)
Q Consensus        35 ~~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~  113 (332)
                      ..+.+|+++.-+..| .+-...+.|.+.+++...+...+.........+++.|....+++...+.....|..-++.....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            467888998655544 5666677898989876554333333334567888988888888775422122343345544433


Q ss_pred             EEEeecccccEEEEEecCCCCeE-EEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccC
Q 020021          114 LRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  192 (332)
Q Consensus       114 ~~~~~~h~~~V~~v~~~~~~~~l-~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~  192 (332)
                      ............++++.+.+++| ++-...++|..-|+........+.                                
T Consensus       159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~--------------------------------  206 (263)
T d1npea_         159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE--------------------------------  206 (263)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE--------------------------------
T ss_pred             eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC--------------------------------
Confidence            33333333556788887766554 443455666666654332211110                                


Q ss_pred             CCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe
Q 020021          193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (332)
Q Consensus       193 ~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (332)
                                 +. .....+++. ++.++.+-...+.|...|..+++.+..+
T Consensus       207 -----------~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         207 -----------GL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             -----------CC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             -----------CC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence                       00 011234553 4556666667788999998888876554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.24  E-value=1.5  Score=37.82  Aligned_cols=56  Identities=18%  Similarity=0.369  Sum_probs=38.0

Q ss_pred             CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecC-----CCCCcceEEEECCC
Q 020021          207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-----VSRNSTLEASFSPE  262 (332)
Q Consensus       207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~v~~spd  262 (332)
                      .....++|.|||+++++--..|.|++++..++..........     ....-...++|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            345789999999998877678999999987776543222211     11133457899985

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.73  E-value=8.4  Score=33.81  Aligned_cols=54  Identities=20%  Similarity=0.335  Sum_probs=37.4

Q ss_pred             cCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEEEc
Q 020021          215 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS  270 (332)
Q Consensus       215 s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sgs  270 (332)
                      +-.|.++..++.||.++.+|..+|+.+=+++.........  +.|..||+ ||+..+
T Consensus       466 ~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         466 STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP--MTFELAGRQYVAIMA  520 (560)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEEE
T ss_pred             EECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEEEEEEe
Confidence            3356677889999999999999999997777543222221  46667885 555443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.71  E-value=6.2  Score=32.26  Aligned_cols=61  Identities=21%  Similarity=0.276  Sum_probs=35.4

Q ss_pred             CceeEEEcCCCCEE-EEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC-CCCEEEEE
Q 020021          208 DANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISG  269 (332)
Q Consensus       208 ~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp-dg~~l~sg  269 (332)
                      ..+.+++|||++++ ++-+..++|+.|++.....+........ ....-.+.+.+ +|.+.+++
T Consensus       207 ~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l-~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         207 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-DTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-SSEEEEEEECTTTCCEEEEE
T ss_pred             ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC-CCCCCccEEecCCCEEEEEE
Confidence            45789999999765 5557788999999864432222111111 12233466765 45555544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.29  E-value=10  Score=33.33  Aligned_cols=111  Identities=8%  Similarity=0.050  Sum_probs=61.6

Q ss_pred             CCCEEEEEeCCCcEEEEEc-CCCeeeEEeeeccc----ce-------eEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021           45 SSSYLVTASDDESIRLYDV-TAATCLKTINSKKY----GV-------DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (332)
Q Consensus        45 dg~~l~tgs~D~tv~iwd~-~~~~~~~~~~~~~~----~v-------~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~  112 (332)
                      +|.+.++.+.++.|..-|. ++|+.+-++.....    ..       ..+++.  +..++.++.   |+.+.-.|.++|+
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~---~g~l~alda~tG~  136 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQA---NGHLLALDAKTGK  136 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECT---TSEEEEEETTTCC
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeC---CCcEEeeehhhhh
Confidence            3545555556788888887 47998876542211    00       112222  335555543   6778888999998


Q ss_pred             eEEEeecc---c-ccEEEEEecCCCCeEEEee-----CCCcEEEEeCCCceEEEEEE
Q 020021          113 YLRYFKGH---H-DRVVSLSLCSSKDCFISGS-----LDRTVLLWDQRAEKCQGLLR  160 (332)
Q Consensus       113 ~~~~~~~h---~-~~V~~v~~~~~~~~l~s~s-----~Dg~i~iWd~~~~~~~~~~~  160 (332)
                      .+....-.   . ..++.--.-.++..++..+     .+|.|+-+|.++++.+-...
T Consensus       137 ~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         137 INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             hhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            76654321   1 1111111112233333222     37789999999998776553

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=86.28  E-value=7.7  Score=31.90  Aligned_cols=202  Identities=13%  Similarity=0.166  Sum_probs=106.9

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc-cceeEE---EEccCCCEEEEecCCC-CCceeEEEEccC-CceEEEe
Q 020021           44 KSSSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLV---CFTSHPTTVIYSSKNG-WDESLRLLSLHD-NKYLRYF  117 (332)
Q Consensus        44 ~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~-~~v~~~---~~~~~~~~~~~~s~~g-~d~~v~v~d~~~-~~~~~~~  117 (332)
                      |+..++++....+-|.+||++ |+.++.+.... ..|...   .+......++.++... ...++.+|.+.. ...+..+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            456788888888889999985 78777665332 112211   1111222345554321 124677887753 3334433


Q ss_pred             ecc-------cccEEEEEe--cCC-CC-eEEEeeCCCcEEEEeCC---Cce----EEEEEEecC-ceeEEEcCCCeEEEE
Q 020021          118 KGH-------HDRVVSLSL--CSS-KD-CFISGSLDRTVLLWDQR---AEK----CQGLLRVQG-RPAAAYDDQGLVFAV  178 (332)
Q Consensus       118 ~~h-------~~~V~~v~~--~~~-~~-~l~s~s~Dg~i~iWd~~---~~~----~~~~~~~~~-~~~~~~~~~~~~~~~  178 (332)
                      ...       ...+.++|+  ++. +. +++....+|.+..|.+.   .+.    ....+.... ...+++++....+.+
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEE
Confidence            321       124667776  554 44 45566778999888763   222    222333332 335667766555555


Q ss_pred             Ee-CCEEEEEECccCCCC-CeeEEEecC--CCCCceeEEE--cC--CCCEEEEEcCCCeEEEEEccCC-eEeEEeee
Q 020021          179 AF-GGYIRMFDARKYEKG-PFDIFSVGG--DISDANVVKF--SN--DGRLMLLTTMEGHIHVLDSFRG-TLLSTYNV  246 (332)
Q Consensus       179 ~~-~~~i~vwd~~~~~~~-~~~~~~~~~--~~~~v~~v~~--s~--dg~~l~~~~~dg~i~i~d~~~~-~~~~~~~~  246 (332)
                      +. +..|..++....... ...+....+  ...++..+++  .+  +|.++++.-.+++..+||.... +.+..|..
T Consensus       197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i  273 (353)
T d1h6la_         197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI  273 (353)
T ss_dssp             EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence            54 444544444321111 111222222  2345555654  22  4456666667889999998764 55666654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.68  E-value=11  Score=32.09  Aligned_cols=37  Identities=5%  Similarity=0.104  Sum_probs=29.3

Q ss_pred             cccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE
Q 020021          121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  157 (332)
Q Consensus       121 ~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~  157 (332)
                      ...-++|+|.|+++.|++--..|.|++++..++....
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~   62 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT   62 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEee
Confidence            4566799999999999887667999999877765443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.91  E-value=13  Score=32.87  Aligned_cols=52  Identities=21%  Similarity=0.409  Sum_probs=36.7

Q ss_pred             cCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEE
Q 020021          215 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVIS  268 (332)
Q Consensus       215 s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~s  268 (332)
                      +-.|.++..++.||.++.+|..+|+.+=++..........  +.|..||+ |++.
T Consensus       481 sTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P--~tY~~dGkQYvav  533 (596)
T d1w6sa_         481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHKGTQYVAI  533 (596)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC--eEEEECCEEEEEE
Confidence            3356777789999999999999999997776543222221  46667886 4443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=81.18  E-value=17  Score=31.83  Aligned_cols=52  Identities=13%  Similarity=0.234  Sum_probs=36.9

Q ss_pred             cCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEE
Q 020021          215 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVIS  268 (332)
Q Consensus       215 s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~s  268 (332)
                      +-.|.++.+++.||.++.+|..+|+.+=++..........  +.|..||+ |++.
T Consensus       485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~GkQYv~v  537 (573)
T d1kb0a2         485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGRQYVSV  537 (573)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEE
T ss_pred             EEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEEEEE
Confidence            3467788889999999999999999998777543222221  45667886 4433

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.74  E-value=14  Score=30.78  Aligned_cols=62  Identities=10%  Similarity=0.156  Sum_probs=40.4

Q ss_pred             eeEEEEccCCCEEEEecC-CCCC-ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC
Q 020021           79 VDLVCFTSHPTTVIYSSK-NGWD-ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL  141 (332)
Q Consensus        79 v~~~~~~~~~~~~~~~s~-~g~d-~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~  141 (332)
                      +...+++|+++.++++-+ +|.| ..+++.|+++++.+..--.. .....+.|++|++.|+....
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~  190 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAY  190 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEEC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEEEe
Confidence            445678999998877543 3433 46899999999865422111 11246789999997765543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.72  E-value=11  Score=29.33  Aligned_cols=117  Identities=8%  Similarity=-0.045  Sum_probs=72.8

Q ss_pred             CCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021           34 NGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (332)
Q Consensus        34 ~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~  112 (332)
                      -..+.+|++++.+. +..+-...++|.+.+++...+...+.........+++.|....++++.. +....|.-.++....
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~-~~~~~I~r~~~dGs~  154 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNGVD  154 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCC
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc-CCCcceeEeccCCCc
Confidence            34566888886554 4455566788999998876655555554455677888887778877653 334456666665544


Q ss_pred             eEEEeecccccEEEEEecCCCCeEE-EeeCCCcEEEEeCC
Q 020021          113 YLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQR  151 (332)
Q Consensus       113 ~~~~~~~h~~~V~~v~~~~~~~~l~-s~s~Dg~i~iWd~~  151 (332)
                      ........-....++++.+.+++|. +-...+.|..-|+.
T Consensus       155 ~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECC
Confidence            4333333445667888887665444 33445566655554