Citrus Sinensis ID: 020070

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQGDAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRIISECESALTFLNRDLSILSASIARERGEKVTS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccccccHHHcccccHHHHHHHHHHHHHHHcccccccHHccccccccccHHHHHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHHHHHHccccccHHHccccccccccHHHHHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MAAKQMEEIQKKLAMLnypranapaQSLLFAGMERYSLLEWLFFKllgdkspfsqqnlqgdamdrDEETARIQYLAEIAKFLGItttidteaiqghgsyedRTEMLRLIVDLVEAsiyadnpewsideQVAKDIQLIDSIAEKQALIFSEecklfpadvqiqsiyplpdvselETKLSEQSKILLNLQQKVTDLAskhaynpdedyAEVESQLRAHLESFLETARTFNTIytkeirpwthmmevpqlhgfgpAANRLLEAYKMLLKFLGNLRNLRDSHAALaigssetvagepssvTRIISECESALTFLNRDLSILSASIARERGEKVTS
Flexible Loop (DISEMBL)
MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQGDAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALaigssetvagepssVTRIISECESALTflnrdlsilsasiarergekvts
Low Complexity Region (SEG)
MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQGDAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRIISECESALTFLNRDLSILSASIARERGEKVTS
Disordered region (IsUnstruct)
***************LNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGD********************ARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELE*******KILLNLQQKVTDLA**********YAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIG***********VTRIISECESALTFLNRDLSILS*************
Disordered Region (DISOPRED)
************LAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSP********************QYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIY***********VAKDIQLIDSIAE******SE*CKLFPA*******************************************************LRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRN*******************************SALTFLNRDLSIL**************
Disordered Region (DISEMBL)
********IQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQGDAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSE*********TRIISECESALTFLNRDLSILSASIA*********
Disordered Region (DISPRO)
****QMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFS********MDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIG*********SSVTRIISECESALTFLNRDLSILSASI**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQGDAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDxxxxxxxxxxxxxxxxxxxxxVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRIISECESALTFLNRDLSILSASIARERGEKVTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
449432297	334	PREDICTED: uncharacterized protein LOC10	0.990	0.982	0.920	1e-180
255566000	331	conserved hypothetical protein [Ricinus	0.996	0.996	0.924	1e-179
224124018	331	predicted protein [Populus trichocarpa]	0.996	0.996	0.912	1e-177
225436168	332	PREDICTED: uncharacterized protein LOC10	0.996	0.993	0.906	1e-176
357487865	330	Nuclear matrix protein [Medicago truncat	0.993	0.996	0.893	1e-174
356503228	330	PREDICTED: uncharacterized protein LOC10	0.993	0.996	0.896	1e-172
350536239	331	nuclear matrix protein 1 [Solanum lycope	0.996	0.996	0.872	1e-171
21592356	329	nuclear matrix protein 1 [Arabidopsis th	0.993	1.0	0.878	1e-170
18418367	329	uncharacterized protein [Arabidopsis tha	0.993	1.0	0.878	1e-170
296090150	385	unnamed protein product [Vitis vinifera]	0.996	0.857	0.781	1e-169

>gi|449432297|ref|XP_004133936.1| PREDICTED: uncharacterized protein LOC101219290 [Cucumis sativus] gi|449480017|ref|XP_004155776.1| PREDICTED: uncharacterized protein LOC101227549 [Cucumis sativus]

 Score =  635 bits (1638), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 302/328 (92%), Positives = 319/328 (97%)

Query: 1   MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQG 60
           MAA+QMEEIQ+KL+MLNYPRANAPAQSLLFAGMERY+LLEWLFF+LLGDKSPFSQQN+QG
Sbjct: 1   MAARQMEEIQRKLSMLNYPRANAPAQSLLFAGMERYALLEWLFFRLLGDKSPFSQQNIQG 60

Query: 61  DAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYAD 120
           DA+DRDEET RIQYLAEIAKFLGITTTIDTE IQG GSYE+RTEM+RLIVDLVEASIYAD
Sbjct: 61  DAIDRDEETGRIQYLAEIAKFLGITTTIDTEVIQGRGSYEERTEMIRLIVDLVEASIYAD 120

Query: 121 NPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180
           NP+WS+DEQVAKDIQLIDSIAEKQA IFSEECKLFPADVQIQSIYPLPDVSELETKL+EQ
Sbjct: 121 NPDWSVDEQVAKDIQLIDSIAEKQAQIFSEECKLFPADVQIQSIYPLPDVSELETKLAEQ 180

Query: 181 SKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH 240
           SKILLNLQQKV DLASKHAYNPDE+Y EVESQLRAHLESFLETAR+FN IYTKEIRPWTH
Sbjct: 181 SKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARSFNIIYTKEIRPWTH 240

Query: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRII 300
           MMEVPQLHGFGPAANRLLEAY MLLKFLGNLRNLRDSHAALAIGSSET+AGEPSSVTRII
Sbjct: 241 MMEVPQLHGFGPAANRLLEAYNMLLKFLGNLRNLRDSHAALAIGSSETIAGEPSSVTRII 300

Query: 301 SECESALTFLNRDLSILSASIARERGEK 328
           SECESALTFLNRDL ILSASIARERG++
Sbjct: 301 SECESALTFLNRDLGILSASIARERGQQ 328

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566000|ref|XP_002523988.1| conserved hypothetical protein [Ricinus communis] gi|223536715|gb|EEF38356.1| conserved hypothetical protein [Ricinus communis]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 305/330 (92%), Positives = 316/330 (95%)

Query: 1   MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQG 60
           MAAKQMEEIQ+KL  L YPRA+APAQSLLFAGMERY+LLEWLFFKLLGDKSPFSQQNLQG
Sbjct: 1   MAAKQMEEIQRKLEKLKYPRASAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQG 60

Query: 61  DAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYAD 120
           DAMDRDEETARIQYLAEIAKFLGITTTID +AIQG GSYEDRTEMLRLIVDLVEASI AD
Sbjct: 61  DAMDRDEETARIQYLAEIAKFLGITTTIDPDAIQGRGSYEDRTEMLRLIVDLVEASISAD 120

Query: 121 NPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180
           NPEWS+DEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ
Sbjct: 121 NPEWSVDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180

Query: 181 SKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH 240
           SK+LLNLQQKV DLASKHAYNPDE+Y EVESQLRAHLESFLETAR FN IYTKEIRPWTH
Sbjct: 181 SKVLLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARQFNVIYTKEIRPWTH 240

Query: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRII 300
           MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALA+GSSET+AGEPSSVTRII
Sbjct: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAVGSSETIAGEPSSVTRII 300

Query: 301 SECESALTFLNRDLSILSASIARERGEKVT 330
           SECESALTFLNRDL +LSASIARE+G  V 
Sbjct: 301 SECESALTFLNRDLGVLSASIAREQGNVVN 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124018|ref|XP_002319224.1| predicted protein [Populus trichocarpa] gi|118483669|gb|ABK93728.1| unknown [Populus trichocarpa] gi|222857600|gb|EEE95147.1| predicted protein [Populus trichocarpa]

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 301/330 (91%), Positives = 316/330 (95%)

Query: 1   MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQG 60
           MAAKQME+IQ+KL MLNY RANAPAQSLLFAGMERY+LLEWLFFKLLGDKSPFSQQNLQG
Sbjct: 1   MAAKQMEDIQRKLGMLNYSRANAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQG 60

Query: 61  DAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYAD 120
           DAMDRDEETARIQYLAEIAKFLGIT+ IDTEAIQG GSYEDRTEMLRLIVDLVEASIYAD
Sbjct: 61  DAMDRDEETARIQYLAEIAKFLGITSIIDTEAIQGRGSYEDRTEMLRLIVDLVEASIYAD 120

Query: 121 NPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180
           NPEWS+DEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKL+EQ
Sbjct: 121 NPEWSVDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLAEQ 180

Query: 181 SKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH 240
           SKIL +LQQK+ DLASKHAYNPDE+Y+EVES LRAHLESFLETAR+FN IYTKEIRPWTH
Sbjct: 181 SKILQSLQQKIDDLASKHAYNPDEEYSEVESHLRAHLESFLETARSFNVIYTKEIRPWTH 240

Query: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRII 300
           MMEVPQLHGFGPAANRLLEAYKML KFLGNLRNLRDSHAALA+GSSET AGEPSSVTRII
Sbjct: 241 MMEVPQLHGFGPAANRLLEAYKMLWKFLGNLRNLRDSHAALAVGSSETKAGEPSSVTRII 300

Query: 301 SECESALTFLNRDLSILSASIARERGEKVT 330
           SECESALTFLNRDL ILSASI+RE+G   +
Sbjct: 301 SECESALTFLNRDLGILSASISREKGNNAS 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436168|ref|XP_002264476.1| PREDICTED: uncharacterized protein LOC100243653 [Vitis vinifera]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 300/331 (90%), Positives = 318/331 (96%), Gaps = 1/331 (0%)

Query: 1   MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQG 60
           MAAKQMEEIQKKL MLNYPRANAPAQSLLFAGMERY+LLEWLFF+LLGDKSPFSQQNLQG
Sbjct: 1   MAAKQMEEIQKKLGMLNYPRANAPAQSLLFAGMERYALLEWLFFRLLGDKSPFSQQNLQG 60

Query: 61  -DAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYA 119
            + MDRDEETARIQYLAEIAKFLGITTT+DTEAIQG G+YEDRTEMLRLIVDLVEASIYA
Sbjct: 61  ENGMDRDEETARIQYLAEIAKFLGITTTVDTEAIQGRGTYEDRTEMLRLIVDLVEASIYA 120

Query: 120 DNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSE 179
           DNPEWS+DEQVAKDIQLIDSIAE+QA IFSEECKLFPADVQIQS Y LPD+SELETKLSE
Sbjct: 121 DNPEWSVDEQVAKDIQLIDSIAERQAQIFSEECKLFPADVQIQSKYLLPDISELETKLSE 180

Query: 180 QSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWT 239
           QSK+LLNLQQKV DLASKHAYNPDE+Y EVESQLRAHLESFLETAR+FN IYTKEIRPWT
Sbjct: 181 QSKLLLNLQQKVDDLASKHAYNPDEEYEEVESQLRAHLESFLETARSFNVIYTKEIRPWT 240

Query: 240 HMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRI 299
           HMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAA+A+GSS+T+AG+PS VTRI
Sbjct: 241 HMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAAVAVGSSDTIAGQPSPVTRI 300

Query: 300 ISECESALTFLNRDLSILSASIARERGEKVT 330
           ISECESALTFLNRDL ILSASIARE+GE+ T
Sbjct: 301 ISECESALTFLNRDLGILSASIAREQGEEFT 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487865|ref|XP_003614220.1| Nuclear matrix protein [Medicago truncatula] gi|355515555|gb|AES97178.1| Nuclear matrix protein [Medicago truncatula]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 295/330 (89%), Positives = 314/330 (95%), Gaps = 1/330 (0%)

Query: 1   MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQG 60
           MA+KQME IQKKL MLNYPRANA AQSLLFAGMERY+LLEWLFF+LLGDKSPFSQQNLQG
Sbjct: 1   MASKQMEAIQKKLGMLNYPRANASAQSLLFAGMERYALLEWLFFRLLGDKSPFSQQNLQG 60

Query: 61  DAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYAD 120
           DA+DRDEETARIQYLAEIAKFLGITTT+DT+AIQGHGSYEDRTEMLRLIVDLVEA+IYAD
Sbjct: 61  DALDRDEETARIQYLAEIAKFLGITTTVDTDAIQGHGSYEDRTEMLRLIVDLVEATIYAD 120

Query: 121 NPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180
           NPEWS+DEQVAKDI LIDSIAEKQA IFSEECKLFPADVQIQSIYPLP+V+ELE+KL+EQ
Sbjct: 121 NPEWSVDEQVAKDIHLIDSIAEKQAQIFSEECKLFPADVQIQSIYPLPEVAELESKLTEQ 180

Query: 181 SKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH 240
           SKILLNLQQKV DLASKHAYNPDE+Y EVESQLRAHLESFLETARTFN IYTKEIRPWTH
Sbjct: 181 SKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARTFNMIYTKEIRPWTH 240

Query: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRII 300
           MMEVPQLHGFGPAANRLLEAYKMLLKFLGNL+NLRDSHAALA GSSET  G PSSV+RII
Sbjct: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAALAFGSSETSGG-PSSVSRII 299

Query: 301 SECESALTFLNRDLSILSASIARERGEKVT 330
           SECES +T +NRDL ILSASIARE GEK++
Sbjct: 300 SECESEMTVINRDLGILSASIAREHGEKMS 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503228|ref|XP_003520413.1| PREDICTED: uncharacterized protein LOC100778458 isoform 1 [Glycine max]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/330 (89%), Positives = 311/330 (94%), Gaps = 1/330 (0%)

Query: 1   MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQG 60
           MA++QMEEI+KKLA LNYPRANAPAQSLLFAGMERY+LLEWLFF+LLGDKSPFSQQN+QG
Sbjct: 1   MASRQMEEIRKKLADLNYPRANAPAQSLLFAGMERYALLEWLFFRLLGDKSPFSQQNIQG 60

Query: 61  DAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYAD 120
           D +DRDEET RIQYLAEIAKFLGITTT+DT+AIQGHGSYEDRT MLRLIVDLV+A+I AD
Sbjct: 61  DGLDRDEETGRIQYLAEIAKFLGITTTVDTDAIQGHGSYEDRTAMLRLIVDLVDATICAD 120

Query: 121 NPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180
           NPEWS+DEQVAKDIQLIDSIAEKQA IFSEECKLFPADVQIQSIYPLPDVSELE K SEQ
Sbjct: 121 NPEWSVDEQVAKDIQLIDSIAEKQAQIFSEECKLFPADVQIQSIYPLPDVSELELKFSEQ 180

Query: 181 SKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH 240
           SKILLNLQQKV DLASKHAYNPDE+Y EVESQLRAHLESFLETARTFN IYTKEIRPWTH
Sbjct: 181 SKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARTFNLIYTKEIRPWTH 240

Query: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRII 300
           MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALA GSSET  G PSSVTRII
Sbjct: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAFGSSETSDG-PSSVTRII 299

Query: 301 SECESALTFLNRDLSILSASIARERGEKVT 330
           SECESALT LNRDL ILSASIARE+ EK+ 
Sbjct: 300 SECESALTVLNRDLGILSASIAREQVEKMN 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536239|ref|NP_001234492.1| nuclear matrix protein 1 [Solanum lycopersicum] gi|15077144|gb|AAK83083.1|AF289255_1 nuclear matrix protein 1 [Solanum lycopersicum]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 288/330 (87%), Positives = 313/330 (94%)

Query: 1   MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQG 60
           MAAKQMEEIQKKLA LNYPRANAPAQSLLFAGMERY+LLEWLFFKLLGDKSPFSQQNLQG
Sbjct: 1   MAAKQMEEIQKKLATLNYPRANAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQG 60

Query: 61  DAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYAD 120
           DA+DRDEET+RIQYLAEIAKFLGITTT+D EAIQG GSYEDR EMLRLIVDLVEAS+YAD
Sbjct: 61  DAVDRDEETSRIQYLAEIAKFLGITTTVDPEAIQGRGSYEDRMEMLRLIVDLVEASMYAD 120

Query: 121 NPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180
           NPEWS+DEQVAKDIQLID+IAEKQ+ IFSEECKLFPADVQIQSIYPLPD+S+LE +LS+Q
Sbjct: 121 NPEWSVDEQVAKDIQLIDAIAEKQSQIFSEECKLFPADVQIQSIYPLPDISDLEKQLSDQ 180

Query: 181 SKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH 240
           S  LL+LQ+ V DLASKH YNPDE+Y +VE++LR HLESFL+TARTFNTIYTKEIRPWTH
Sbjct: 181 SNRLLSLQEMVDDLASKHPYNPDEEYVDVEAKLRGHLESFLDTARTFNTIYTKEIRPWTH 240

Query: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRII 300
           MMEVPQLHGFGPAANRLLEAYKML KFLGNL+NLRDSHAA+A GSSETVAGEPSSVTRII
Sbjct: 241 MMEVPQLHGFGPAANRLLEAYKMLWKFLGNLKNLRDSHAAVAAGSSETVAGEPSSVTRII 300

Query: 301 SECESALTFLNRDLSILSASIARERGEKVT 330
           SECE+ALT LNRDL+ILSASIARERGE ++
Sbjct: 301 SECETALTLLNRDLAILSASIARERGEDIS 330

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592356|gb|AAM64307.1| nuclear matrix protein 1 [Arabidopsis thaliana]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 289/329 (87%), Positives = 311/329 (94%)

Query: 1   MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQG 60
           MAAKQMEEIQKKL +L+YPRANAPAQSLLFAGMERY+LLEWLFFKLLGDKSPFSQQNLQG
Sbjct: 1   MAAKQMEEIQKKLGLLSYPRANAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQG 60

Query: 61  DAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYAD 120
           DA  RDEET RIQYLAEIAKFLGIT T+D EAIQGHG+YEDR EMLR IVDLVEAS+++D
Sbjct: 61  DAGVRDEETVRIQYLAEIAKFLGITPTVDIEAIQGHGTYEDRMEMLRNIVDLVEASLFSD 120

Query: 121 NPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180
           N EWSIDEQVAKDIQLID+IAE+Q+LIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ
Sbjct: 121 NQEWSIDEQVAKDIQLIDAIAERQSLIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180

Query: 181 SKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH 240
           +KIL NLQQKV DLA+KHAYNPDE+Y EVESQLRA LESFLETAR FNTIYTKEIRPWTH
Sbjct: 181 AKILSNLQQKVDDLAAKHAYNPDEEYTEVESQLRARLESFLETARAFNTIYTKEIRPWTH 240

Query: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRII 300
           MMEVPQLHGFGPAANRLLEAY MLLKFLGNL+NLRDSHAAL+IGSS TVAGEPSSVTRI+
Sbjct: 241 MMEVPQLHGFGPAANRLLEAYNMLLKFLGNLKNLRDSHAALSIGSSGTVAGEPSSVTRIV 300

Query: 301 SECESALTFLNRDLSILSASIARERGEKV 329
           S+CE+ALT LNRDL ILSASIARE+GE++
Sbjct: 301 SDCEAALTVLNRDLGILSASIAREQGERL 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418367|ref|NP_568354.1| uncharacterized protein [Arabidopsis thaliana] gi|110743134|dbj|BAE99459.1| hypothetical protein [Arabidopsis thaliana] gi|110743233|dbj|BAE99507.1| hypothetical protein [Arabidopsis thaliana] gi|192571728|gb|ACF04809.1| At5g17620 [Arabidopsis thaliana] gi|332005066|gb|AED92449.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 289/329 (87%), Positives = 311/329 (94%)

Query: 1   MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQG 60
           MAAKQMEEIQKKL +L+YPRANAPAQSLLFAGMERY+LLEWLFFKLLGDKSPFSQQNLQG
Sbjct: 1   MAAKQMEEIQKKLRLLSYPRANAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQG 60

Query: 61  DAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYAD 120
           DA  RDEET RIQYLAEIAKFLGIT T+D EAIQGHG+YEDR EMLR IVDLVEAS+++D
Sbjct: 61  DAGVRDEETVRIQYLAEIAKFLGITPTVDIEAIQGHGTYEDRMEMLRNIVDLVEASLFSD 120

Query: 121 NPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180
           N EWSIDEQVAKDIQLID+IAE+Q+LIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ
Sbjct: 121 NQEWSIDEQVAKDIQLIDAIAERQSLIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180

Query: 181 SKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH 240
           +KIL NLQQKV DLA+KHAYNPDE+Y EVESQLRA LESFLETAR FNTIYTKEIRPWTH
Sbjct: 181 AKILSNLQQKVDDLAAKHAYNPDEEYTEVESQLRARLESFLETARAFNTIYTKEIRPWTH 240

Query: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRII 300
           MMEVPQLHGFGPAANRLLEAY MLLKFLGNL+NLRDSHAAL+IGSS TVAGEPSSVTRI+
Sbjct: 241 MMEVPQLHGFGPAANRLLEAYNMLLKFLGNLKNLRDSHAALSIGSSGTVAGEPSSVTRIV 300

Query: 301 SECESALTFLNRDLSILSASIARERGEKV 329
           S+CE+ALT LNRDL ILSASIARE+GE++
Sbjct: 301 SDCEAALTVLNRDLGILSASIAREQGERL 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090150|emb|CBI39969.3| unnamed protein product [Vitis vinifera]

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 300/384 (78%), Positives = 318/384 (82%), Gaps = 54/384 (14%)

Query: 1   MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQG 60
           MAAKQMEEIQKKL MLNYPRANAPAQSLLFAGMERY+LLEWLFF+LLGDKSPFSQQNLQG
Sbjct: 1   MAAKQMEEIQKKLGMLNYPRANAPAQSLLFAGMERYALLEWLFFRLLGDKSPFSQQNLQG 60

Query: 61  -DAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYA 119
            + MDRDEETARIQYLAEIAKFLGITTT+DTEAIQG G+YEDRTEMLRLIVDLVEASIYA
Sbjct: 61  ENGMDRDEETARIQYLAEIAKFLGITTTVDTEAIQGRGTYEDRTEMLRLIVDLVEASIYA 120

Query: 120 DNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSE 179
           DNPEWS+DEQVAKDIQLIDSIAE+QA IFSEECKLFPADVQIQS Y LPD+SELETKLSE
Sbjct: 121 DNPEWSVDEQVAKDIQLIDSIAERQAQIFSEECKLFPADVQIQSKYLLPDISELETKLSE 180

Query: 180 QSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWT 239
           QSK+LLNLQQKV DLASKHAYNPDE+Y EVESQLRAHLESFLETAR+FN IYTKEIRPWT
Sbjct: 181 QSKLLLNLQQKVDDLASKHAYNPDEEYEEVESQLRAHLESFLETARSFNVIYTKEIRPWT 240

Query: 240 HMMEVPQLHGFGPAANRLLEAYKML----------------------------------- 264
           HMMEVPQLHGFGPAANRLLEAYKML                                   
Sbjct: 241 HMMEVPQLHGFGPAANRLLEAYKMLLKLFPNIIMLFICKFHLLEKREHNTLFLGFRLINS 300

Query: 265 ------------------LKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRIISECESA 306
                             LKFLGNLRNLRDSHAA+A+GSS+T+AG+PS VTRIISECESA
Sbjct: 301 ISSIKMHTFCENKEIAWQLKFLGNLRNLRDSHAAVAVGSSDTIAGQPSPVTRIISECESA 360

Query: 307 LTFLNRDLSILSASIARERGEKVT 330
           LTFLNRDL ILSASIARE+GE+ T
Sbjct: 361 LTFLNRDLGILSASIAREQGEEFT 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2151371	329	AUG7 "AT5G17620" [Arabidopsis	0.993	1.0	0.878	3.7e-151

TAIR|locus:2151371 AUG7 "AT5G17620" [Arabidopsis thaliana (taxid:3702)]

 Score = 1475 (524.3 bits), Expect = 3.7e-151, P = 3.7e-151
 Identities = 289/329 (87%), Positives = 311/329 (94%)

Query:     1 MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQG 60
             MAAKQMEEIQKKL +L+YPRANAPAQSLLFAGMERY+LLEWLFFKLLGDKSPFSQQNLQG
Sbjct:     1 MAAKQMEEIQKKLRLLSYPRANAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQG 60

Query:    61 DAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYAD 120
             DA  RDEET RIQYLAEIAKFLGIT T+D EAIQGHG+YEDR EMLR IVDLVEAS+++D
Sbjct:    61 DAGVRDEETVRIQYLAEIAKFLGITPTVDIEAIQGHGTYEDRMEMLRNIVDLVEASLFSD 120

Query:   121 NPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180
             N EWSIDEQVAKDIQLID+IAE+Q+LIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ
Sbjct:   121 NQEWSIDEQVAKDIQLIDAIAERQSLIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180

Query:   181 SKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH 240
             +KIL NLQQKV DLA+KHAYNPDE+Y EVESQLRA LESFLETAR FNTIYTKEIRPWTH
Sbjct:   181 AKILSNLQQKVDDLAAKHAYNPDEEYTEVESQLRARLESFLETARAFNTIYTKEIRPWTH 240

Query:   241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRII 300
             MMEVPQLHGFGPAANRLLEAY MLLKFLGNL+NLRDSHAAL+IGSS TVAGEPSSVTRI+
Sbjct:   241 MMEVPQLHGFGPAANRLLEAYNMLLKFLGNLKNLRDSHAALSIGSSGTVAGEPSSVTRIV 300

Query:   301 SECESALTFLNRDLSILSASIARERGEKV 329
             S+CE+ALT LNRDL ILSASIARE+GE++
Sbjct:   301 SDCEAALTVLNRDLGILSASIAREQGERL 329


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.361    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      331       331   0.00090  116 3  11 22  0.41    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  202 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.83u 0.11s 29.94t   Elapsed:  00:00:01
  Total cpu time:  29.83u 0.11s 29.94t   Elapsed:  00:00:01
  Start:  Fri May 10 23:41:17 2013   End:  Fri May 10 23:41:18 2013

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005876 "spindle microtubule" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0051011 "microtubule minus-end binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130707 SubName- Full=Putative uncharacterized protein; (331 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
pfam06694	325	pfam06694, Plant_NMP1, Plant nuclear matrix protei	0.0

>gnl|CDD|115357 pfam06694, Plant_NMP1, Plant nuclear matrix protein 1 (NMP1)

 Score =  576 bits (1485), Expect = 0.0
 Identities = 275/325 (84%), Positives = 302/325 (92%)

Query: 1   MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQG 60
           MAAKQMEEIQKKLA+L YPRANAPAQSLLFAGMERY+LLEWLFFKLLGDKSPFSQQNLQG
Sbjct: 1   MAAKQMEEIQKKLALLEYPRANAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQG 60

Query: 61  DAMDRDEETARIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYAD 120
           DA+DRDEE  RIQ+LAEIAKFLGIT + D EAIQG GSYEDR E+L LIVDLVEAS YAD
Sbjct: 61  DALDRDEENNRIQHLAEIAKFLGITPSADPEAIQGRGSYEDRMELLHLIVDLVEASCYAD 120

Query: 121 NPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180
           NPEWS+DEQ+AKDIQLID+IAEKQA IFSEECKLFPADVQIQSIYPLPD+++LE KLS+Q
Sbjct: 121 NPEWSVDEQLAKDIQLIDAIAEKQAQIFSEECKLFPADVQIQSIYPLPDIADLEKKLSDQ 180

Query: 181 SKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH 240
           SK LLNLQ+ V DLASKH YNPDEDYA+ E++LR HLESFL+TA++FNTIYTKEI PWTH
Sbjct: 181 SKKLLNLQEMVDDLASKHDYNPDEDYADTEAKLREHLESFLDTAKSFNTIYTKEIHPWTH 240

Query: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRII 300
           MMEVPQLHGFGPAANRLLEAYKMLLKFLGNL+NLRDSHAA+A GS E+ AGEPSSVT+II
Sbjct: 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLKNLRDSHAAMAAGSLESAAGEPSSVTKII 300

Query: 301 SECESALTFLNRDLSILSASIARER 325
           S+CESALTFLN DL+ILSASIARE+
Sbjct: 301 SDCESALTFLNHDLAILSASIAREQ 325

This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm. Length = 325

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
PF06694	325	Plant_NMP1: Plant nuclear matrix protein 1 (NMP1);	100.0
PF11348	257	DUF3150: Protein of unknown function (DUF3150); In	83.0

>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences

Probab=100.00  E-value=1.6e-103  Score=746.60  Aligned_cols=325  Identities=78%  Similarity=1.146  Sum_probs=322.5

Q ss_pred             ChhhHHHHHHHHhhhcCCCCCcCcchhcccCchhhHHHHHHHHHhhcCCCCCchhhcccCCcCCCChHHHhHHHHHHHHH
Q 020070            1 MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQGDAMDRDEETARIQYLAEIAK   80 (331)
Q Consensus         1 ~~~~~~~ev~~kL~~L~CP~legl~~sLLcPs~~Rl~ILeWl~~Ri~~~~~P~~q~~~~~~~~~~~~~d~rIQelakl~~   80 (331)
                      ||+|||++|++||..||||+.++|.|||||.|++||++|||||+|++|||+|++|++++|++.+|+++++|||+|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Llf~G~~R~~Ll~WLF~rllg~~~p~~~q~lqg~~~~r~~~~~R~Q~L~~iA~   80 (325)
T PF06694_consen    1 MASKQMEEIQKKLALLNYPRANAPAQSLLFAGEERYRLLQWLFFRLLGDKSPFTQQNLQGDHKDRDEEDSRIQYLLEIAS   80 (325)
T ss_pred             CchhHHHHHHHHHHhccCCccCCcHHHHHHcchHHHHHHHHHHHHHcCCCChhHHHHHhccccccccchHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCCchhhhccCCChhHHHHHHHHHHHHHHhhhcCCCCCcchHHHhhhhHHHHHHHHHHHHhhcCcccCCCCcchh
Q 020070           81 FLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQ  160 (331)
Q Consensus        81 eLmLC~~~D~dLIkG~as~~kQl~Fl~qLLDlV~s~~~~~~~~~s~~eq~~~n~~Ll~~l~~~lq~~lspec~~~P~D~q  160 (331)
                      +||||+++|.|+|||+||+++|++||++|+|+|+++.+.++++||++|||++|+.|+|.|+++++++|+++|++||+||+
T Consensus        81 ~LGl~~~~D~e~IqG~~s~e~~~~~l~~IVDlVeas~~~~n~e~Sl~eQ~~kD~~LiD~IaE~~~QvFs~~ckLFP~DVq  160 (325)
T PF06694_consen   81 FLGLCPTVDIEAIQGKCSYEKRAEFLRLIVDLVEASMYADNPEWSLDEQFAKDIQLIDAIAEKQQQVFSEECKLFPPDVQ  160 (325)
T ss_pred             HhCCccccCHHHHhccCChhHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhHHHHHhhhcCcCCHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccC
Q 020070          161 IQSIYPLPDVSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH  240 (331)
Q Consensus       161 ~~~~~~~p~v~eL~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~~~c~  240 (331)
                      +++++++||+++|++++.+.+++|+.||++++++++|++|+|++++.+..++||++|+.|.|++++|++||++|||+|||
T Consensus       161 i~S~~~lPD~seLe~~~s~~sk~Lq~lqq~v~~Lask~~y~pd~~~~e~~~~Lr~~L~tflq~~~~F~~~Y~~EIrpWch  240 (325)
T PF06694_consen  161 IQSIYPLPDVSELEKKASELSKQLQSLQQQVAELASKHPYNPDEEYVEKESQLRLELETFLQTAAGFNHCYEKEIRPWCH  240 (325)
T ss_pred             hccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccchHHHHHHHHHHHHHHHHHHHhhHhhhHhhhcCCCccccCCCcchhHHHHhhHHHHhhhhhhHHHHHHH
Q 020070          241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRIISECESALTFLNRDLSILSAS  320 (331)
Q Consensus       241 r~~~P~Lh~~GP~~q~V~q~l~~~~k~L~~L~~lr~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~il~~s  320 (331)
                      ||++|+||++||+|+|||++|++++|+|+||+++|+||+|||+||.+++.+||+++++||++|++||+.|||+|+|||+|
T Consensus       241 ~~~~P~L~gLGPAa~Rlle~y~~l~klL~nL~~lr~Sh~ai~~gs~~t~s~e~~s~~~ivs~~e~al~~lnr~l~il~~s  320 (325)
T PF06694_consen  241 MMEVPQLHGLGPAANRLLELYKMLLKLLGNLATLRDSHAAIAAGSSPTTSDEPSSVTQIVSECETALTQLNRSLAILSAS  320 (325)
T ss_pred             cCccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCccHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence            99999999999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             HHHHh
Q 020070          321 IARER  325 (331)
Q Consensus       321 ~~r~~  325 (331)
                      |+|+|
T Consensus       321 ~~r~~  325 (325)
T PF06694_consen  321 VAREQ  325 (325)
T ss_pred             hhccC
Confidence            99986

Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].

>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria

Probab=83.00  E-value=11  Score=36.31  Aligned_cols=40  Identities=20%  Similarity=0.440  Sum_probs=36.6

Q ss_pred             CChhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCC
Q 020070          202 PDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHM  241 (331)
Q Consensus       202 p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~~~c~r  241 (331)
                      |.....++..+|..+-.+|.+....|+.-|+..+.+||++
T Consensus        79 P~~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~~  118 (257)
T PF11348_consen   79 PEDKAEELAEELEDIKTEFEQEKQDFLANYDQAIEEWIDR  118 (257)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5557777889999999999999999999999999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 43/259 (16%), Positives = 85/259 (32%), Gaps = 78/259 (30%)

Query: 66  DEETARIQYLAEIAKFLGI-TTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYADNPE- 123
            +E   +     + K+L      +  E +  +             + ++  SI  D    
Sbjct: 300 PDEVKSL-----LLKYLDCRPQDLPREVLTTN----------PRRLSIIAESI-RDGLAT 343

Query: 124 WSIDEQVAKD--IQLIDSI------AEKQALIFSEECKLFPADVQI----------QSIY 165
           W   + V  D    +I+S       AE + + F +   +FP    I            I 
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-F-DRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 166 PLPD--VSELETK--LSEQSK--------ILLNLQQKVTDLASKH-----AYNPDEDYAE 208
                 V++L     + +Q K        I L L+ K+ +  + H      YN  + + +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-D 460

Query: 209 VESQLRAHLESFLETARTFNTI-YTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKF 267
            +  +  +L+ +      ++ I +        H+  +             L+      +F
Sbjct: 461 SDDLIPPYLDQYF-----YSHIGH--------HLKNIEHPERMTLFRMVFLD-----FRF 502

Query: 268 LGN-LRNLRDSHAALAIGS 285
           L   +R+  DS A  A GS
Sbjct: 503 LEQKIRH--DSTAWNASGS 519

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00