Citrus Sinensis ID: 020107

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLTR
Secondary Structure (PSIPRED)
cccEEEEccccccEEEEEEccccccEEEEEEccccccccccccccEEEEEEEcccccEEEEEEEccccEEEEEEcccccccccEEEEEcccccEEEEccccccccccEEEEEEccccccEEEEEccccEEEEEcccccEEEEEEEEccccEEEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccccEEEEEcccccccEEEEcccccEEEEEEcccccccEEEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEccccccccccccccEEEEEEEcccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccEEEEccccccccEEEEEEEEEcccccccccEEEEEEEEccccccEEEEEEEccccEEEEcccccccccEEEEEEccccEEEEccccccccccEEEEEEEccccccEEEEEccccEEEEEEcccccccHEEEEcccccEEEEEEEccccccEEEEEccccEEEEEEcccccccccEEEccccccEEEEEEcccccccEEEEEccccEEEEEEcccccccccEEEcccccEEEEEEEccccccEEEEEEccccEEEEEcccccccHHHHccccccEEEEcccccccccccccccccEEEEEEEEccEEEEEccccccccc
Coil and Loop (DISEMBL)
mdvahceldgnadavefcpqdsyhhvlaastytlqegdkpsrngsisLFNVNAEEKNLELLYRMDTAgifdikwspvggnagpflaqadadggllrditgekisssmclclewnpsatsitvglsdgsVSIVSVVESQLEVLQQWKAHEFElwatsfdvhqphmvytgsddckfsgwdirespfklafqnskihkMGVCciasipsdsntlltgsydeylRVWDVrsiskpvnetsvclgggvwrikhhpfipgLVLAACMHNGFAVVKVGGEKAEVLETYAKhgslaygadwqrgrsslegkrknslvATCSFYDRLLriwmpesdcltr
Flexible Loop (DISEMBL)
mdvahcelDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASipsdsntlltGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAkhgslaygadwqrgrsslegkrknslvatcsfydrllriwmpesdcltr
Low Complexity Region (SEG)
MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLTR
Disordered region (IsUnstruct)
*******LDGNADAVEFCPQDSYHHVLAASTYTL***********ISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRG********KNSLVATCSFYDRLLRIWMP*******
Disordered Region (DISOPRED)
*DVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT*
Disordered Region (DISEMBL)
MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLTR
Disordered Region (DISPRO)
MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
Q9BTV6	452	WD repeat-containing prot	yes	no	0.842	0.617	0.375	2e-44
Q9CYU6	477	WD repeat-containing prot	yes	no	0.842	0.584	0.367	1e-43
Q55C80	367	WD repeat-containing prot	yes	no	0.915	0.825	0.301	9e-41
O74865	326	WD repeat-containing prot	yes	no	0.851	0.865	0.288	5e-30
P38332	387	Diphthamide biosynthesis	yes	no	0.522	0.447	0.341	6e-21
P43254	675	E3 ubiquitin-protein liga	no	no	0.383	0.188	0.298	4e-11
P93471	672	E3 ubiquitin-protein liga	N/A	no	0.386	0.190	0.285	2e-10
O00628	323	Peroxisomal targeting sig	no	no	0.797	0.817	0.253	5e-08
P97865	318	Peroxisomal targeting sig	no	no	0.797	0.830	0.246	2e-07
Q8R537	318	Peroxisomal targeting sig	yes	no	0.797	0.830	0.24	1e-06

>sp|Q9BTV6|WDR85_HUMAN WD repeat-containing protein 85 OS=Homo sapiens GN=WDR85 PE=2 SV=2

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 170/330 (51%), Gaps = 51/330 (15%)

Query: 11  NADAVEFCPQDSYHHVLAASTYTLQEG-DKPS---------------RNGSISL--FNVN 52
            AD+VE+CP     H+LA  TY L+   D+P+               R G + L  FN N
Sbjct: 15  TADSVEWCPLQGCRHLLACGTYQLRRPEDRPAGPQNKGGMEVKEPQVRLGRLFLYSFNDN 74

Query: 53  AEEKNLELLYRMDTAGIFDIKWS--PVGGNAGPFLAQADADGGLLRDITGEK------IS 104
                L  + R DT+ I D+KW   PV G+A   LA A     LLR +  EK      +S
Sbjct: 75  NSIHPLVEVQRKDTSAILDMKWCHIPVAGHALLGLADASGSIQLLRLVESEKSHVLEPLS 134

Query: 105 S------SMCLCLEWNPSAT--------SITVGLSDGSVSIVSVVESQ--LEVLQQWKAH 148
           S       + L L+W+   T         I    S G + ++ V E++  L+ +  W+AH
Sbjct: 135 SLALEEQCLALSLDWSTGKTGRAGDQPLKIISSDSTGQLHLLMVNETRPRLQKVASWQAH 194

Query: 149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS 208
           +FE W  +F+   P +VY+G DD    GWD R  P K  F  SK H MGVC I S P   
Sbjct: 195 QFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTR-VPGKFLF-TSKRHTMGVCSIQSSPHRE 252

Query: 209 NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVV 268
           + L TGSYDE++ +WD R++ +P+ +T V   GGVWRIK HPF   L+LAACMH+GF ++
Sbjct: 253 HILATGSYDEHILLWDTRNMKQPLADTPV--QGGVWRIKWHPFHHHLLLAACMHSGFKIL 310

Query: 269 KVGG-----EKAEVLETYAKHGSLAYGADW 293
                    ++A VL ++    SL YGADW
Sbjct: 311 NCQKAMEERQEATVLTSHTLPDSLVYGADW 340

Plays a role in the first step of diphthamide biosynthesis, a post-translational modification of histidine which occurs in translation elongation factor 2 which can be ADP-ribosylated by diphtheria toxin and by Pseudomonas exotoxin A.
Homo sapiens (taxid: 9606)

>sp|Q9CYU6|WDR85_MOUSE WD repeat-containing protein 85 OS=Mus musculus GN=Wdr85 PE=2 SV=1

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/324 (36%), Positives = 167/324 (51%), Gaps = 45/324 (13%)

Query: 11  NADAVEFCPQDSYHHVLAASTYTLQ--------EGDKPS-RNGSISLFNVNAEEKNLELL 61
            AD+VE+CP + Y H+LA  TY L+        +G +P  R G + LF+ +       LL
Sbjct: 20  TADSVEWCPVEGYQHLLACGTYQLRAPRDQPALDGSEPQVRLGRLYLFSFSEHNTAKPLL 79

Query: 62  --YRMDTAGIFDIKWS--PVGGNAGPFLAQADADGGLLR-------DITGEKISS----- 105
              R D++ + D+KW   PV G+    LA A    GLLR         T + ISS     
Sbjct: 80  EVQRRDSSAVLDMKWCHIPVSGHVLLGLANASGSIGLLRLMECENNSYTLQPISSLALDE 139

Query: 106 -SMCLCLEWNPSAT--------SITVGLSDGSVSIVSVVE--SQLEVLQQWKAHEFELWA 154
             + L ++W+   +         I    S G + ++ V E  ++L+++  W AH FE W 
Sbjct: 140 NCLSLSMDWSTGKSVRAREQPLKIISSDSKGQLHLLMVNEGTAELQLVASWPAHHFEAWI 199

Query: 155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG 214
            +F+  Q  +VY+G DDC   GWD R          SK H MGVC I S P   + L TG
Sbjct: 200 AAFNYWQTELVYSGGDDCLLRGWDTRM--LGTPVFTSKRHCMGVCSIQSSPHQEHILATG 257

Query: 215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVV---KVG 271
           SYDE++ +WD R+I +P+ +  V   GGVWR+K HP    L+LAACMHNGF ++   K  
Sbjct: 258 SYDEHVLLWDTRNIRQPLADVPV--QGGVWRLKWHPVHHHLLLAACMHNGFKILNCQKAI 315

Query: 272 GEKAE--VLETYAKHGSLAYGADW 293
            EK +  VL ++    SL YGADW
Sbjct: 316 EEKQDITVLTSHEMPNSLVYGADW 339

Plays a role in the first step of diphthamide biosynthesis.

Mus musculus (taxid: 10090)

>sp|Q55C80|WDR85_DICDI WD repeat-containing protein 85 homolog OS=Dictyostelium discoideum GN=wdr85 PE=3 SV=1

 Score =  167 bits (424), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 178/371 (47%), Gaps = 68/371 (18%)

Query: 8   LDGNADAVEFCPQDSYHHVLAASTYTLQEGD---KPSRNGSISLF--------------- 49
           LD  +D+VEF P +  +++    TY +++GD   K  R G + LF               
Sbjct: 11  LDYTSDSVEFYPFN--NNIFVCGTYEIEKGDTEYKERRKGKLYLFEIEEEQQQKENDNNN 68

Query: 50  ------NVNAEEKNLELLYRMDTAGIFDIKWSP--------VGGNAGPFLAQADADGGLL 95
                  +  E +N+        +GI D+KW+         V       + Q D     L
Sbjct: 69  ENNNNNKLFKEIQNINF-----NSGILDMKWNNNKDRILGVVMSKGELNIYQYDEVEKKL 123

Query: 96  RDITGEKISSS---MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQ--WKAHEF 150
              +  +IS S   + L L+WN S   +    SDG++ +  V +   +V ++  WKAH++
Sbjct: 124 ELKSSTEISLSNDILSLSLDWNKSGDKLICSFSDGNIGLFKVTKDYSKVTEEKRWKAHDY 183

Query: 151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRE----------SPFKLAFQNSKIHKMGVCC 200
           E W  +F+ H   +V++G DDCKF  WD+ +           P    F  +K   MGV  
Sbjct: 184 EAWICAFNYHDESIVFSGGDDCKFKIWDLNQLLNHNDDDIGIPPTPKF--TKRCDMGVTS 241

Query: 201 IASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC 260
           I   P+  N +  GSYDE LR+WD++S+ +P+  T+  LGGG+WRIK HPF    ++ AC
Sbjct: 242 IHCHPTIENLIAVGSYDECLRIWDLKSLKQPI-ITTDSLGGGIWRIKWHPFQKNKLVTAC 300

Query: 261 MHNGFAVVKVGGEKA------EVLETY-AKHGSLAYGADWQRGRSSLEGKRKNSLVATCS 313
           M  GF ++    E        ++ ++Y   H S+AYG DW   +++ + +     +  CS
Sbjct: 301 MGGGFHILSTDPENINDFSTLQIEQSYNGPHKSIAYGVDWSFNKNNFDKQ----FIGCCS 356

Query: 314 FYDRLLRIWMP 324
           FYD+ L IW+P
Sbjct: 357 FYDKCLSIWIP 367

Dictyostelium discoideum (taxid: 44689)

>sp|O74865|WDR85_SCHPO WD repeat-containing protein C18.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18.15 PE=3 SV=2

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 151/315 (47%), Gaps = 33/315 (10%)

Query: 23  YHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSP------ 76
           +  VL   TY L E  K  R+G + L++   +E  L+ ++ M    I D KWSP      
Sbjct: 27  FEDVLVVGTYMLDESTKL-RHGKLVLYD--TKEDVLKRVFDMHCDAILDFKWSPHDASVL 83

Query: 77  ----VGGNAGPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIV 132
                 G+   +  Q  A+   LR I     SS + L L+++ S   + V +S+GSV I+
Sbjct: 84  AVAHSTGHVSFYRHQFRAELMFLRGIKVAD-SSVLMLSLDFSDSGKELAVSMSNGSVLII 142

Query: 133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK 192
            +    ++   +WK H++E W   +     +++Y+G DD     +D R  P    +++ +
Sbjct: 143 DIDSGVIK--NKWKEHDYEAWTCHYSRQDNNLLYSGGDDAALVCYDQR-IPNSCIWRDIQ 199

Query: 193 IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI 252
           +H  GV  I S       + TG Y +++   D R+I KP+   S  LGGGVWR++H    
Sbjct: 200 VHHSGVVSILSRAPFGPYIATGEYGDFMHTLDTRNIGKPL--FSANLGGGVWRLEHMETT 257

Query: 253 PGL--VLAACMHNGFAVVKVGGEKAEV---LETYAKHGSLAYGADWQRGRSSLEGKRKNS 307
                VL   MH G  V+++  + + +      + +H S+ YG DW         +  + 
Sbjct: 258 ENYHKVLGILMHRGAQVLRISNDFSSIDASKRIFKEHESMCYGGDW---------RHTDG 308

Query: 308 LVATCSFYDRLLRIW 322
           L+ATCSFYD+ + +W
Sbjct: 309 LLATCSFYDKRVCLW 323

Plays a role in the first step of diphthamide biosynthesis, a post-translational modification of histidine.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38332|WDR85_YEAST Diphthamide biosynthesis protein RRT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRT2 PE=1 SV=1

 Score =  101 bits (252), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/214 (34%), Positives = 100/214 (46%), Gaps = 41/214 (19%)

Query: 138 QLEVLQQWKAHEFELWATSFDVHQPH--MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK 195
            +E  Q  K HE E W   F   QP   +V+TG DD +    D+R   F   + N++IH 
Sbjct: 186 HVESGQFLKPHELECWTAEFGSLQPFQDVVFTGGDDSRIMAHDLRSKEF--IWSNNRIHD 243

Query: 196 MGVCCI-ASIPSDSN----TLLTGSYDEYLRVWDVRSISK---------PVNETSVCLGG 241
            GV  I  S P+  N    +++TGSYD+ +R  D+R + +          VN+ +  LGG
Sbjct: 244 AGVVSIKCSQPNFRNNKPTSIITGSYDDNIRSLDLRMMGESIFPGANVPTVNKLACDLGG 303

Query: 242 GVWRIKHHPFI--------PGLVLAACMHNGFAVVKVGGEKAEVLET--YAK--HGSLAY 289
           GVWR    P             +L  CM+NG  VV +     E  +   Y K  H S+ Y
Sbjct: 304 GVWRFVESPIDQEQSHHNGSDRLLVCCMYNGAKVVTMNDNSDEYFQIQHYLKKGHDSMCY 363

Query: 290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM 323
           G DW            NSL+ATCSFYD  L+ W+
Sbjct: 364 GGDWS-----------NSLIATCSFYDNSLQTWI 386

Plays a role in the amidation of diphtine into diphthamide, which corresponds to the third step of diphthamide biosynthesis, a post-translational modification of histidine within elongation factor 2 (EFT1 and EFT2). Plays also a role in the regulation of the retromer complex and is required for the recycling from endosomes of plasma membrane proteins like CAN1 and MUP1. Identified in a screen for mutants with decreased levels of rDNA transcription.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 7/134 (5%)

Query: 101 EKISSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV 159
           E  + S   CL WN      I     +G V++  V   Q   L +++ HE   W+  F  
Sbjct: 416 EMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQ--SLMEYEEHEKRAWSVDFSR 473

Query: 160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY 219
            +P M+ +GSDDCK   W  R+    +        K  +CC+   P  SN +  GS D +
Sbjct: 474 TEPSMLVSGSDDCKVKVWCTRQEASVINID----MKANICCVKYNPGSSNYIAVGSADHH 529

Query: 220 LRVWDVRSISKPVN 233
           +  +D+R+IS+P++
Sbjct: 530 IHYYDLRNISQPLH 543

E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Represses photomorphogenesis in darkness by mediating ubiquitination and subsequent proteasomal degradation of light-induced transcription factors such as HY5, HYH and LAF1. Down-regulates MYB21, probably via ubiquitination process. Light stimuli abrogate the repression of photomorphogenesis, possibly due to its localization to the cytoplasm. Could play a role in switching between skotomorphogenetic and photomorphogenetic pathways.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 5/133 (3%)

Query: 101 EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160
           E  + S   CL WN  A +  +  SD    +     +  + L +++ HE   W+  F   
Sbjct: 413 EMTTRSKLSCLSWNKYAKN-QIASSDYEGIVTVWTMTTRKSLMEYEEHEKRAWSVDFSRT 471

Query: 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYL 220
            P M+ +GSDDCK   W   +    L        K  +CC+   P   N +  GS D ++
Sbjct: 472 DPSMLVSGSDDCKVKVWCTNQEASVLNID----MKANICCVKYNPGSGNYIAVGSADHHI 527

Query: 221 RVWDVRSISKPVN 233
             +D+R+IS+PV+
Sbjct: 528 HYYDLRNISRPVH 540

E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Represses photomorphogenesis in darkness by mediating ubiquitination and subsequent proteasomal degradation of light-induced transcription factors. Light stimuli abrogate the repression of photomorphogenesis, possibly due to its localization to the cytoplasm. Could play a role in switching between skotomorphogenetic and photomorphogenetic pathways.

Pisum sativum (taxid: 3888)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O00628|PEX7_HUMAN Peroxisomal targeting signal 2 receptor OS=Homo sapiens GN=PEX7 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 124/300 (41%), Gaps = 36/300 (12%)

Query: 44  GSISLFNVNAEEKNLELLYRMD-TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE 101
           G  +L  ++ +E  L L    D   G+FD+ WS    N    L     DG L L D    
Sbjct: 44  GCGTLLILDPDEAGLRLFRSFDWNDGLFDVTWSE---NNEHVLITCSGDGSLQLWDTA-- 98

Query: 102 KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL---------EVLQQWKAHEFEL 152
           K +  + +  E      S+    + G   +VS    Q          + L  ++ HE  +
Sbjct: 99  KAAGPLQVYKEHAQEVYSVDWSQTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESII 158

Query: 153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL 212
           ++T +  H P    + S D     WD++ +  ++       H+  +        + N L+
Sbjct: 159 YSTIWSPHIPGCFASASGDQTLRIWDVKAAGVRIVI---PAHQAEILSCDWCKYNENLLV 215

Query: 213 TGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP--GLVLAACMHNGFAVVKV 270
           TG+ D  LR WD+R++ +PV E    L G  + I+   F P    VLA+C ++       
Sbjct: 216 TGAVDCSLRGWDLRNVRQPVFE----LLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWN 271

Query: 271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT 330
             +   +LET   H     G D+     SL+   +   VA CS +D  ++I+ P   CLT
Sbjct: 272 FSKPDSLLETVEHHTEFTCGLDF-----SLQSPTQ---VADCS-WDETIKIYDPA--CLT 320

Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import.

Homo sapiens (taxid: 9606)

>sp|P97865|PEX7_MOUSE Peroxisomal targeting signal 2 receptor OS=Mus musculus GN=Pex7 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 122/300 (40%), Gaps = 36/300 (12%)

Query: 44  GSISLFNVNAEEKNLELLYRMD-TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE 101
           G  +L  ++  E  L++    D   G+FD+ WS    N    L     DG L L D    
Sbjct: 39  GCGTLLVLDQNESGLQIFRSFDWNDGLFDVTWSE---NNEHVLVTCSGDGSLQLWDTA-- 93

Query: 102 KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL---------EVLQQWKAHEFEL 152
           K +  + +  E      S+    + G   +VS    Q            L  ++ HE  +
Sbjct: 94  KATGPLQVYKEHTQEVYSVDWSQTRGEQLVVSGSWDQTVKVWDPTVGNSLCTFRGHESVI 153

Query: 153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL 212
           ++T +  H P    + S D     WD++ +  ++       H+  +        + N ++
Sbjct: 154 YSTIWSPHIPGCFASASGDQTLRIWDVKTTGVRIVI---PAHQTEILSCDWCKYNENLVV 210

Query: 213 TGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP--GLVLAACMHNGFAVVKV 270
           TG+ D  LR WD+R++ +PV E    L G  + I+   F P    VLA+C ++       
Sbjct: 211 TGAVDCSLRGWDLRNVRQPVFE----LLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWN 266

Query: 271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT 330
             +   +LET   H     G D      SL+   +   VA CS +D  ++I+ P   CLT
Sbjct: 267 FSKPDPLLETVEHHTEFTCGLD-----LSLQSPTQ---VADCS-WDETIKIYDPV--CLT 315

Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import.

Mus musculus (taxid: 10090)

>sp|Q8R537|PEX7_CRIGR Peroxisomal targeting signal 2 receptor OS=Cricetulus griseus GN=PEX7 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 44  GSISLFNVNAEEKNLELLYRMD-TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE 101
           G  +L  ++  +  L++    D + G+FD+ WS    +    L     DG L L D    
Sbjct: 39  GCGTLIILDQNQSGLQIFRSFDWSDGLFDVTWSEDNEHV---LVTCSGDGSLQLWDTA-- 93

Query: 102 KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL---------EVLQQWKAHEFEL 152
           K +  + +  E      S+    + G   +VS    Q            L  ++ HE  +
Sbjct: 94  KATGPLQVYKEHTQEVYSVDWSQTRGEQLVVSGSWDQTVKVWDPTVGNSLCTFRGHESVI 153

Query: 153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL 212
           ++T +  H P    + S D     WD++ +  ++       H+  +        + N ++
Sbjct: 154 YSTIWSPHIPGCFASASGDQTLRIWDVKTAGVRIVI---PAHQTEILSCDWCKYNENLVV 210

Query: 213 TGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP--GLVLAACMHNGFAVVKV 270
           TG+ D  LR WD+R++ +PV E    L G  + I+   F P    VLA+C ++       
Sbjct: 211 TGAVDCSLRGWDLRNVRQPVFE----LLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWN 266

Query: 271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT 330
             +   +LET   H     G D      SL+   +   VA CS +D  ++I+ P   CLT
Sbjct: 267 FSKPDPLLETVEHHTEFTCGLD-----LSLQSPTE---VADCS-WDETIKIYDPV--CLT 315

Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import.

Cricetulus griseus (taxid: 10029)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
359491397	341	PREDICTED: WD repeat-containing protein	0.987	0.958	0.742	1e-145
225456985	353	PREDICTED: WD repeat-containing protein	0.987	0.926	0.725	1e-145
225456983	349	PREDICTED: WD repeat-containing protein	0.987	0.936	0.725	1e-144
255540619	341	nucleotide binding protein, putative [Ri	0.996	0.967	0.709	1e-144
449440666	342	PREDICTED: WD repeat-containing protein	0.993	0.961	0.696	1e-139
357495105	421	WD repeat-containing protein [Medicago t	0.987	0.776	0.673	1e-138
297733757	1255	unnamed protein product [Vitis vinifera]	0.894	0.235	0.742	1e-137
217073558	348	unknown [Medicago truncatula] gi|3885027	0.987	0.939	0.673	1e-137
356530487	337	PREDICTED: WD repeat-containing protein	0.987	0.970	0.683	1e-136
356530485	344	PREDICTED: WD repeat-containing protein	0.987	0.950	0.669	1e-135

>gi|359491397|ref|XP_002282158.2| PREDICTED: WD repeat-containing protein 85 isoform 3 [Vitis vinifera]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/338 (74%), Positives = 286/338 (84%), Gaps = 11/338 (3%)

Query: 1   MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL 60
           MDVAHC L+GNADAVEFCP DSYHHVLAASTYTLQEGD+PSR+GS+SLFN++AE   LEL
Sbjct: 1   MDVAHCYLEGNADAVEFCPHDSYHHVLAASTYTLQEGDQPSRSGSVSLFNIDAEFGRLEL 60

Query: 61  LYRMDTAGIFDIKWSPVGGNAGPFLAQADADG----------GLLRDITGEKISSSMCLC 110
            +R+DTAGIFDIKWSP G  A P LAQADADG          G L +I  EKISSSMCL 
Sbjct: 61  GHRVDTAGIFDIKWSPAGSTAVPSLAQADADGYLRLYGLESGGSLTEINAEKISSSMCLF 120

Query: 111 LEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD 170
           L+WNPSAT I+VGLSDGS+SI+S+ ESQL++ Q+WKAHEFELW+TSFD+HQP +VYTGSD
Sbjct: 121 LDWNPSATCISVGLSDGSISIISLRESQLDICQEWKAHEFELWSTSFDIHQPQLVYTGSD 180

Query: 171 DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK 230
           DCKFS WD+R+SP KLAFQNSK+HKMGVCCIA  PSD N +LTGSYDE+LR+WDVRSI K
Sbjct: 181 DCKFSCWDLRDSPSKLAFQNSKVHKMGVCCIAKSPSDPNLVLTGSYDEHLRLWDVRSIIK 240

Query: 231 PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG 290
           PVNETS+CLGGGVWRIKHHP +PGLVLAACMHNGFAVVK  GE+ EV+ETY+KH SLAYG
Sbjct: 241 PVNETSICLGGGVWRIKHHPSVPGLVLAACMHNGFAVVKTKGEEPEVIETYSKHESLAYG 300

Query: 291 ADWQRGRSSLEGKRK-NSLVATCSFYDRLLRIWMPESD 327
           ADWQRG    +G+    S+VATCSFYDRLLRIW  ES+
Sbjct: 301 ADWQRGDLCRKGQNNGGSVVATCSFYDRLLRIWTTESN 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456985|ref|XP_002282151.1| PREDICTED: WD repeat-containing protein 85 isoform 2 [Vitis vinifera]

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/346 (72%), Positives = 286/346 (82%), Gaps = 19/346 (5%)

Query: 1   MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL 60
           MDVAHC L+GNADAVEFCP DSYHHVLAASTYTLQEGD+PSR+GS+SLFN++AE   LEL
Sbjct: 5   MDVAHCYLEGNADAVEFCPHDSYHHVLAASTYTLQEGDQPSRSGSVSLFNIDAEFGRLEL 64

Query: 61  LYRMDTAGIFDIKWSPVGGNAGPFLAQADADG------------------GLLRDITGEK 102
            +R+DTAGIFDIKWSP G  A P LAQADADG                  G L +I  EK
Sbjct: 65  GHRVDTAGIFDIKWSPAGSTAVPSLAQADADGYLRLYGLESGSSGAEALGGSLTEINAEK 124

Query: 103 ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162
           ISSSMCL L+WNPSAT I+VGLSDGS+SI+S+ ESQL++ Q+WKAHEFELW+TSFD+HQP
Sbjct: 125 ISSSMCLFLDWNPSATCISVGLSDGSISIISLRESQLDICQEWKAHEFELWSTSFDIHQP 184

Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
            +VYTGSDDCKFS WD+R+SP KLAFQNSK+HKMGVCCIA  PSD N +LTGSYDE+LR+
Sbjct: 185 QLVYTGSDDCKFSCWDLRDSPSKLAFQNSKVHKMGVCCIAKSPSDPNLVLTGSYDEHLRL 244

Query: 223 WDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA 282
           WDVRSI KPVNETS+CLGGGVWRIKHHP +PGLVLAACMHNGFAVVK  GE+ EV+ETY+
Sbjct: 245 WDVRSIIKPVNETSICLGGGVWRIKHHPSVPGLVLAACMHNGFAVVKTKGEEPEVIETYS 304

Query: 283 KHGSLAYGADWQRGRSSLEGKRK-NSLVATCSFYDRLLRIWMPESD 327
           KH SLAYGADWQRG    +G+    S+VATCSFYDRLLRIW  ES+
Sbjct: 305 KHESLAYGADWQRGDLCRKGQNNGGSVVATCSFYDRLLRIWTTESN 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456983|ref|XP_002282140.1| PREDICTED: WD repeat-containing protein 85 isoform 1 [Vitis vinifera]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/346 (72%), Positives = 286/346 (82%), Gaps = 19/346 (5%)

Query: 1   MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL 60
           MDVAHC L+GNADAVEFCP DSYHHVLAASTYTLQEGD+PSR+GS+SLFN++AE   LEL
Sbjct: 1   MDVAHCYLEGNADAVEFCPHDSYHHVLAASTYTLQEGDQPSRSGSVSLFNIDAEFGRLEL 60

Query: 61  LYRMDTAGIFDIKWSPVGGNAGPFLAQADADG------------------GLLRDITGEK 102
            +R+DTAGIFDIKWSP G  A P LAQADADG                  G L +I  EK
Sbjct: 61  GHRVDTAGIFDIKWSPAGSTAVPSLAQADADGYLRLYGLESGSSGAEALGGSLTEINAEK 120

Query: 103 ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162
           ISSSMCL L+WNPSAT I+VGLSDGS+SI+S+ ESQL++ Q+WKAHEFELW+TSFD+HQP
Sbjct: 121 ISSSMCLFLDWNPSATCISVGLSDGSISIISLRESQLDICQEWKAHEFELWSTSFDIHQP 180

Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
            +VYTGSDDCKFS WD+R+SP KLAFQNSK+HKMGVCCIA  PSD N +LTGSYDE+LR+
Sbjct: 181 QLVYTGSDDCKFSCWDLRDSPSKLAFQNSKVHKMGVCCIAKSPSDPNLVLTGSYDEHLRL 240

Query: 223 WDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA 282
           WDVRSI KPVNETS+CLGGGVWRIKHHP +PGLVLAACMHNGFAVVK  GE+ EV+ETY+
Sbjct: 241 WDVRSIIKPVNETSICLGGGVWRIKHHPSVPGLVLAACMHNGFAVVKTKGEEPEVIETYS 300

Query: 283 KHGSLAYGADWQRGRSSLEGKRK-NSLVATCSFYDRLLRIWMPESD 327
           KH SLAYGADWQRG    +G+    S+VATCSFYDRLLRIW  ES+
Sbjct: 301 KHESLAYGADWQRGDLCRKGQNNGGSVVATCSFYDRLLRIWTTESN 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540619|ref|XP_002511374.1| nucleotide binding protein, putative [Ricinus communis] gi|223550489|gb|EEF51976.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/341 (70%), Positives = 287/341 (84%), Gaps = 11/341 (3%)

Query: 1   MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL 60
           M+VAHC LDGNADAVEFCP DSY HVLAA+TYTLQEGD P R+GSISL +VN +  + +L
Sbjct: 1   MEVAHCYLDGNADAVEFCPHDSYTHVLAAATYTLQEGDNPRRSGSISLLDVNGDGDDFKL 60

Query: 61  LYRMDTAGIFDIKWSPVGGNAG-PFLAQADADG----------GLLRDITGEKISSSMCL 109
            +R+DTAGIFDIKW+PVGGN   P LAQADADG          G LR+I GEKISSSMCL
Sbjct: 61  FHRVDTAGIFDIKWNPVGGNMDKPMLAQADADGCLRIHELEKEGFLREINGEKISSSMCL 120

Query: 110 CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS 169
           CL+WNP++TSI+VG SDGSVSI+S  ES+L+++Q+WKAH+FELWA SFD+HQ H+VYTGS
Sbjct: 121 CLDWNPASTSISVGFSDGSVSIISFSESKLDIVQEWKAHDFELWAASFDMHQSHLVYTGS 180

Query: 170 DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS 229
           DDCKFS WD+R+SP    F NS++HKMGVCCIA  PSD N+LLTGSYDE+LR+WDVRS+S
Sbjct: 181 DDCKFSCWDLRDSPSNKVFLNSRVHKMGVCCIAKNPSDPNSLLTGSYDEHLRIWDVRSMS 240

Query: 230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAY 289
           KPVNETSV LGGGVWR+K HP++PGLVLAACMHNGFA+VK+  EK EV+ETY+KHGSLAY
Sbjct: 241 KPVNETSVHLGGGVWRLKFHPYVPGLVLAACMHNGFAIVKIKEEKGEVIETYSKHGSLAY 300

Query: 290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT 330
           GADWQR   S E K+K++LVATCSFYDRLL+IWMPE++   
Sbjct: 301 GADWQRKEFSQEDKQKSTLVATCSFYDRLLKIWMPENNIFV 341

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440666|ref|XP_004138105.1| PREDICTED: WD repeat-containing protein 85-like [Cucumis sativus] gi|449477428|ref|XP_004155020.1| PREDICTED: WD repeat-containing protein 85-like [Cucumis sativus]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/343 (69%), Positives = 282/343 (82%), Gaps = 14/343 (4%)

Query: 1   MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL 60
           MDVAHC LDGNAD VEFCP  S+ +VLAASTYTLQEG++PSR+GS+S+FN+NA+  +LEL
Sbjct: 1   MDVAHCTLDGNADGVEFCPHSSFSNVLAASTYTLQEGEQPSRSGSLSIFNINADIGSLEL 60

Query: 61  LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-------------LRDITGEKISSSM 107
           L+R++TAGIFDIKWS VG  A P LAQADADG L             L++  G KISSSM
Sbjct: 61  LHRVETAGIFDIKWSSVGQTASPLLAQADADGCLRIHALECSSNEYCLKEKCGSKISSSM 120

Query: 108 CLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYT 167
           CLCL+WN SA+SI+VG SDGS+SI+S  ES LEV  QWKAHEFELWATSFD HQPH+VYT
Sbjct: 121 CLCLDWNTSASSISVGHSDGSISILSAGESHLEVQNQWKAHEFELWATSFDTHQPHLVYT 180

Query: 168 GSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
           GSDDCKFS WD+R++P K+ F N+K+HKMGVCCIA IP+D   LLTGSYDE LRVWD+R+
Sbjct: 181 GSDDCKFSCWDLRDTPSKV-FHNTKVHKMGVCCIAKIPNDPYKLLTGSYDENLRVWDIRA 239

Query: 228 ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL 287
           ISKP+NETS+CLGGGVW+IK HP +  +VLAACMHNGFA+V+V  + AEV+ETYAKH SL
Sbjct: 240 ISKPINETSICLGGGVWKIKPHPSVSDVVLAACMHNGFAIVRVKDDGAEVVETYAKHNSL 299

Query: 288 AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT 330
           AYGADWQRG SS E KRK   VATCSFYD+LLRIW+PE+D +T
Sbjct: 300 AYGADWQRGDSSQEDKRKRYAVATCSFYDKLLRIWIPETDIIT 342

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495105|ref|XP_003617841.1| WD repeat-containing protein [Medicago truncatula] gi|355519176|gb|AET00800.1| WD repeat-containing protein [Medicago truncatula]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 231/343 (67%), Positives = 279/343 (81%), Gaps = 16/343 (4%)

Query: 1   MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL 60
           MDVAHC L+GNADAVEFCP D +H+VLAASTYTLQEGD+PSR+GSISLFN++A+    + 
Sbjct: 74  MDVAHCYLEGNADAVEFCPHDRHHNVLAASTYTLQEGDQPSRSGSISLFNIDADTGKFDT 133

Query: 61  LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL----------------LRDITGEKIS 104
           +Y  +T+GIFDIKW+P  GN  PFL QADADG L                L++IT EK+S
Sbjct: 134 VYSEETSGIFDIKWNPPAGNISPFLGQADADGYLRIKMLDGCSDGIQGANLKEITSEKVS 193

Query: 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM 164
           +SMCL L+WNP++TSITVGLSDGSVSIVS+ ES+LE+ ++WKAH+FELW TSFD+HQP++
Sbjct: 194 NSMCLYLDWNPASTSITVGLSDGSVSIVSLHESKLEIQEEWKAHDFELWTTSFDIHQPNL 253

Query: 165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD 224
           VYTGSDDCKF  WD+R+SP KL F+NSK+HKMGV CI   P D NTLLTGSYDE+LRVWD
Sbjct: 254 VYTGSDDCKFCCWDLRDSPSKLVFKNSKVHKMGVTCIEKSPHDPNTLLTGSYDEFLRVWD 313

Query: 225 VRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH 284
           +RSISKPVNETS+ LGGGVWR+KHHPFI GLVLAACMHNGFA+V + G+KAEVLETY KH
Sbjct: 314 LRSISKPVNETSISLGGGVWRVKHHPFIQGLVLAACMHNGFAIVAIKGDKAEVLETYKKH 373

Query: 285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327
            SLAYGADWQ+G ++        +VATCSFYD+L+R+W P +D
Sbjct: 374 DSLAYGADWQKGEANHTKGSSKPVVATCSFYDKLVRVWRPCND 416

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733757|emb|CBI15004.3| unnamed protein product [Vitis vinifera]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/314 (74%), Positives = 264/314 (84%), Gaps = 18/314 (5%)

Query: 1   MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL 60
           MDVAHC L+GNADAVEFCP DSYHHVLAASTYTLQEGD+PSR+GS+SLFN++AE   LEL
Sbjct: 5   MDVAHCYLEGNADAVEFCPHDSYHHVLAASTYTLQEGDQPSRSGSVSLFNIDAEFGRLEL 64

Query: 61  LYRMDTAGIFDIKWSPVGGNAGPFLAQADADG------------------GLLRDITGEK 102
            +R+DTAGIFDIKWSP G  A P LAQADADG                  G L +I  EK
Sbjct: 65  GHRVDTAGIFDIKWSPAGSTAVPSLAQADADGYLRLYGLESGSSGAEALGGSLTEINAEK 124

Query: 103 ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162
           ISSSMCL L+WNPSAT I+VGLSDGS+SI+S+ ESQL++ Q+WKAHEFELW+TSFD+HQP
Sbjct: 125 ISSSMCLFLDWNPSATCISVGLSDGSISIISLRESQLDICQEWKAHEFELWSTSFDIHQP 184

Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
            +VYTGSDDCKFS WD+R+SP KLAFQNSK+HKMGVCCIA  PSD N +LTGSYDE+LR+
Sbjct: 185 QLVYTGSDDCKFSCWDLRDSPSKLAFQNSKVHKMGVCCIAKSPSDPNLVLTGSYDEHLRL 244

Query: 223 WDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA 282
           WDVRSI KPVNETS+CLGGGVWRIKHHP +PGLVLAACMHNGFAVVK  GE+ EV+ETY+
Sbjct: 245 WDVRSIIKPVNETSICLGGGVWRIKHHPSVPGLVLAACMHNGFAVVKTKGEEPEVIETYS 304

Query: 283 KHGSLAYGADWQRG 296
           KH SLAYGADWQRG
Sbjct: 305 KHESLAYGADWQRG 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073558|gb|ACJ85139.1| unknown [Medicago truncatula] gi|388502704|gb|AFK39418.1| unknown [Medicago truncatula]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 231/343 (67%), Positives = 279/343 (81%), Gaps = 16/343 (4%)

Query: 1   MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL 60
           MDVAHC L+GNADAVEFCP D +H+VLAASTYTLQEGD+PSR+GSISLFN++A+    + 
Sbjct: 1   MDVAHCYLEGNADAVEFCPHDRHHNVLAASTYTLQEGDQPSRSGSISLFNIDADTGKFDT 60

Query: 61  LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL----------------LRDITGEKIS 104
           +Y  +T+GIFDIKW+P  GN  PFL QADADG L                L++IT EK+S
Sbjct: 61  VYSEETSGIFDIKWNPPAGNISPFLGQADADGYLRIKMLDGCSDGIQGANLKEITSEKVS 120

Query: 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM 164
           +SMCL L+WNP++TSITVGLSDGSVSIVS+ ES+LE+ ++WKAH+FELW TSFD+HQP++
Sbjct: 121 NSMCLYLDWNPASTSITVGLSDGSVSIVSLHESKLEIQEEWKAHDFELWTTSFDIHQPNL 180

Query: 165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD 224
           VYTGSDDCKF  WD+R+SP KL F+NSK+HKMGV CI   P D NTLLTGSYDE+LRVWD
Sbjct: 181 VYTGSDDCKFCCWDLRDSPSKLVFKNSKVHKMGVTCIEKSPHDPNTLLTGSYDEFLRVWD 240

Query: 225 VRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH 284
           +RSISKPVNETS+ LGGGVWR+KHHPFI GLVLAACMHNGFA+V + G+KAEVLETY KH
Sbjct: 241 LRSISKPVNETSISLGGGVWRVKHHPFIQGLVLAACMHNGFAIVAIKGDKAEVLETYKKH 300

Query: 285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327
            SLAYGADWQ+G ++        +VATCSFYD+L+R+W P +D
Sbjct: 301 DSLAYGADWQKGEANHTKGSSKPVVATCSFYDKLVRVWRPCND 343

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530487|ref|XP_003533812.1| PREDICTED: WD repeat-containing protein 85 homolog isoform 2 [Glycine max]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/338 (68%), Positives = 278/338 (82%), Gaps = 11/338 (3%)

Query: 1   MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL 60
           MD+AHC L GNADAVEFCP D YH+VLA STYTLQEG +P R+GSISLFNV+ E  +L++
Sbjct: 1   MDIAHCYLKGNADAVEFCPHDPYHNVLAVSTYTLQEGSQPCRHGSISLFNVDVEPGHLDM 60

Query: 61  LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL---------LRDITGEKISSSMCLCL 111
           ++  +TAGIFDIKW+P GG+A PFLAQADADG L         L++IT EKIS+SMCL L
Sbjct: 61  VFSEETAGIFDIKWNPPGGHASPFLAQADADGYLRIKMLEGVNLKEITNEKISNSMCLYL 120

Query: 112 EWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD 171
           +WNPSATSITVGLSDGSVSIVS +ES+LE+ ++WKAH++ELW TSFD+HQP++VYTGSDD
Sbjct: 121 DWNPSATSITVGLSDGSVSIVSFLESKLEIQEEWKAHDYELWTTSFDIHQPNLVYTGSDD 180

Query: 172 CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP 231
           CKFS WD+R+ P  + FQ+SK+HKMGVCCI   P D NTLLTGSYDE+LRVWD+RSISKP
Sbjct: 181 CKFSCWDLRDKPPNVVFQSSKVHKMGVCCIEKSPHDPNTLLTGSYDEFLRVWDLRSISKP 240

Query: 232 VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGA 291
           +N  S+ LGGGVWR+KHHPFIPGLVLAACMHNGFA+V + G  AEV ETY KH SLAYGA
Sbjct: 241 LN--SINLGGGVWRVKHHPFIPGLVLAACMHNGFAIVAIKGNNAEVSETYKKHDSLAYGA 298

Query: 292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329
           DWQ+G ++  G     LVATCSFYD+L+R+W P +D +
Sbjct: 299 DWQKGEANHIGGNTKPLVATCSFYDKLVRVWRPGNDLI 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530485|ref|XP_003533811.1| PREDICTED: WD repeat-containing protein 85 homolog isoform 1 [Glycine max]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/345 (66%), Positives = 278/345 (80%), Gaps = 18/345 (5%)

Query: 1   MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL 60
           MD+AHC L GNADAVEFCP D YH+VLA STYTLQEG +P R+GSISLFNV+ E  +L++
Sbjct: 1   MDIAHCYLKGNADAVEFCPHDPYHNVLAVSTYTLQEGSQPCRHGSISLFNVDVEPGHLDM 60

Query: 61  LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL----------------LRDITGEKIS 104
           ++  +TAGIFDIKW+P GG+A PFLAQADADG L                L++IT EKIS
Sbjct: 61  VFSEETAGIFDIKWNPPGGHASPFLAQADADGYLRIKMLEGCCNGVEGVNLKEITNEKIS 120

Query: 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM 164
           +SMCL L+WNPSATSITVGLSDGSVSIVS +ES+LE+ ++WKAH++ELW TSFD+HQP++
Sbjct: 121 NSMCLYLDWNPSATSITVGLSDGSVSIVSFLESKLEIQEEWKAHDYELWTTSFDIHQPNL 180

Query: 165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD 224
           VYTGSDDCKFS WD+R+ P  + FQ+SK+HKMGVCCI   P D NTLLTGSYDE+LRVWD
Sbjct: 181 VYTGSDDCKFSCWDLRDKPPNVVFQSSKVHKMGVCCIEKSPHDPNTLLTGSYDEFLRVWD 240

Query: 225 VRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH 284
           +RSISKP+N  S+ LGGGVWR+KHHPFIPGLVLAACMHNGFA+V + G  AEV ETY KH
Sbjct: 241 LRSISKPLN--SINLGGGVWRVKHHPFIPGLVLAACMHNGFAIVAIKGNNAEVSETYKKH 298

Query: 285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329
            SLAYGADWQ+G ++  G     LVATCSFYD+L+R+W P +D +
Sbjct: 299 DSLAYGADWQKGEANHIGGNTKPLVATCSFYDKLVRVWRPGNDLI 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2166315	343	AT5G63010 "AT5G63010" [Arabido	0.981	0.947	0.636	2.3e-117
MGI|MGI:1914478	477	Wdr85 "WD repeat domain 85" [M	0.498	0.345	0.437	1.4e-51
RGD|1304868	463	RGD1304868 "similar to RIKEN c	0.498	0.356	0.437	2.2e-51
UNIPROTKB|F1MY10	454	Bt.18449 "Uncharacterized prot	0.498	0.363	0.417	3.7e-46
UNIPROTKB|Q9BTV6	452	WDR85 "WD repeat-containing pr	0.552	0.404	0.415	9.5e-46
DICTYBASE|DDB_G0270178	367	wdr85 "WD40 repeat-containing	0.679	0.613	0.338	3.7e-44
ZFIN|ZDB-GENE-070410-57	443	wdr85 "WD repeat domain 85" [D	0.604	0.451	0.415	1.6e-43
UNIPROTKB|F1NSA3	376	WDR85 "Uncharacterized protein	0.507	0.446	0.435	1.8e-42
POMBASE|SPCC18.15	326	rrt2 "WD repeat protein, invol	0.882	0.895	0.290	2e-31
CGD|CAL0005473	345	orf19.2191 [Candida albicans (	0.873	0.837	0.289	6.6e-26

TAIR|locus:2166315 AT5G63010 "AT5G63010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1156 (412.0 bits), Expect = 2.3e-117, P = 2.3e-117
 Identities = 221/347 (63%), Positives = 270/347 (77%)

Query:     1 MDVAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNV-NAEEKNLE 59
             MD A C L+GNADAVEFCP +SY ++LAASTYTLQEGD PSR+GS+ LF+V + E+  L 
Sbjct:     1 MDAADCYLEGNADAVEFCPHESYANLLAASTYTLQEGDCPSRSGSVYLFDVGDVEDVGLN 60

Query:    60 LLYRMDTAGIFDIKWSPVGGNAGPF-LAQADADG-------------GLLRDITGEKISS 105
             L+ ++DTAG+FDI+WS  GG+ G   LAQADADG             G LR+++G++ISS
Sbjct:    61 LIQKIDTAGVFDIRWSR-GGDGGDVALAQADADGCLIVYKIDETESKGTLREVSGKRISS 119

Query:   106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV 165
             SMCLCL+W+PS+TSI VGLSDGS S+VS  +S LE +Q+WK H+FELW  SFD++ P++V
Sbjct:   120 SMCLCLDWDPSSTSIVVGLSDGSASVVSFTDSNLETVQEWKGHDFELWTASFDLNNPNLV 179

Query:   166 YTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD 224
             YTGSDDCKFS WDIR+SP     FQNSK+H MGVCCI+S PSD  ++ TGSYDE LRVWD
Sbjct:   180 YTGSDDCKFSCWDIRDSPADNRVFQNSKVHTMGVCCISSNPSDPYSIFTGSYDETLRVWD 239

Query:   225 VRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH 284
              RS+S+P+NETSV LGGGVWRIKHHP + G+VLAACMHNGFA+ KV   K EVLE+Y KH
Sbjct:   240 TRSVSRPLNETSVSLGGGVWRIKHHPSLSGVVLAACMHNGFALAKVSDGKGEVLESYNKH 299

Query:   285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLTR 331
              SLAYGADW RG+      +K S+VATCSFYDRLLR+WMP +D  TR
Sbjct:   300 HSLAYGADWYRGKD-----QKQSVVATCSFYDRLLRVWMPITDFSTR 341

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

MGI|MGI:1914478 Wdr85 "WD repeat domain 85" [Mus musculus (taxid:10090)]

 Score = 358 (131.1 bits), Expect = 1.4e-51, Sum P(3) = 1.4e-51
 Identities = 77/176 (43%), Positives = 105/176 (59%)

Query:   125 SDGSVSIVSVVE--SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES 182
             S G + ++ V E  ++L+++  W AH FE W  +F+  Q  +VY+G DDC   GWD R  
Sbjct:   168 SKGQLHLLMVNEGTAELQLVASWPAHHFEAWIAAFNYWQTELVYSGGDDCLLRGWDTRML 227

Query:   183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242
                + F  SK H MGVC I S P   + L TGSYDE++ +WD R+I +P+ +  V   GG
Sbjct:   228 GTPV-F-TSKRHCMGVCSIQSSPHQEHILATGSYDEHVLLWDTRNIRQPLADVPV--QGG 283

Query:   243 VWRIKHHPFIPGLVLAACMHNGFAVV---KVGGEKAE--VLETYAKHGSLAYGADW 293
             VWR+K HP    L+LAACMHNGF ++   K   EK +  VL ++    SL YGADW
Sbjct:   284 VWRLKWHPVHHHLLLAACMHNGFKILNCQKAIEEKQDITVLTSHEMPNSLVYGADW 339

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=ISO

RGD|1304868 RGD1304868 "similar to RIKEN cDNA 2810443J12" [Rattus norvegicus (taxid:10116)]

 Score = 363 (132.8 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
 Identities = 77/176 (43%), Positives = 105/176 (59%)

Query:   125 SDGSVSIVSVVE--SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES 182
             S G + ++ + E  +QL++L  W AH FE W  +F+  Q  +VY+G DDC   GWD R  
Sbjct:   168 SKGQLHLLLLSEGAAQLQLLASWPAHHFEAWIAAFNYWQTELVYSGGDDCLLRGWDTRML 227

Query:   183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242
               K  F  SK H MGVC I S P   + L TGSYDE++ +WD R++ +P+ +  V   GG
Sbjct:   228 G-KPVF-TSKRHSMGVCSIQSSPHREHILATGSYDEHVLLWDTRNVRQPLADVPV--QGG 283

Query:   243 VWRIKHHPFIPGLVLAACMHNGFAVV---KVGGEKAE--VLETYAKHGSLAYGADW 293
             VWR++ HP    L+LAACMHNGF ++   K   EK +  VL ++    SL YGADW
Sbjct:   284 VWRLRWHPVHHHLLLAACMHNGFKILNCQKAIEEKQDITVLTSHTMPNSLVYGADW 339

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=ISS

UNIPROTKB|F1MY10 Bt.18449 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 359 (131.4 bits), Expect = 3.7e-46, Sum P(3) = 3.7e-46
 Identities = 73/175 (41%), Positives = 103/175 (58%)

Query:   125 SDGSVSIVSVVESQ--LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES 182
             S G + ++ ++E+   L+ +  W+AH+FE W  +F+  Q  +VY+G DD    GWD R  
Sbjct:   164 SKGQLHLLKILEAGPGLQAVVTWRAHQFEAWVAAFNYWQTEVVYSGGDDGLLKGWDTR-M 222

Query:   183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242
             P   AF +S+ H MGVC I S P   N L TGSYDE++ +WD RS+ +P+ +  V   GG
Sbjct:   223 PDTAAF-SSRRHSMGVCSIQSSPHRENILATGSYDEHVLLWDTRSLRQPLADVPV--QGG 279

Query:   243 VWRIKHHPFIPGLVLAACMHNGFAVVK----VGGEKAEVLETYAKHGSLAYGADW 293
             VWR+K HPF   L+LAACMH GF ++       GE+  +  +     SL YG DW
Sbjct:   280 VWRLKWHPFQRDLLLAACMHGGFKIINYQMAAEGEQEAISLSCPLPNSLVYGIDW 334

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

UNIPROTKB|Q9BTV6 WDR85 "WD repeat-containing protein 85" [Homo sapiens (taxid:9606)]

 Score = 371 (135.7 bits), Expect = 9.5e-46, Sum P(3) = 9.5e-46
 Identities = 84/202 (41%), Positives = 118/202 (58%)

Query:   107 MCLCLEWNPSATS------ITVGLSD--GSVSIVSVVESQ--LEVLQQWKAHEFELWATS 156
             + L L+W+   T       + +  SD  G + ++ V E++  L+ +  W+AH+FE W  +
Sbjct:   143 LALSLDWSTGKTGRAGDQPLKIISSDSTGQLHLLMVNETRPRLQKVASWQAHQFEAWIAA 202

Query:   157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY 216
             F+   P +VY+G DD    GWD R  P K  F  SK H MGVC I S P   + L TGSY
Sbjct:   203 FNYWHPEIVYSGGDDGLLRGWDTRV-PGKFLF-TSKRHTMGVCSIQSSPHREHILATGSY 260

Query:   217 DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVV---KVGGE 273
             DE++ +WD R++ +P+ +T V   GGVWRIK HPF   L+LAACMH+GF ++   K   E
Sbjct:   261 DEHILLWDTRNMKQPLADTPV--QGGVWRIKWHPFHHHLLLAACMHSGFKILNCQKAMEE 318

Query:   274 KAE--VLETYAKHGSLAYGADW 293
             + E  VL ++    SL YGADW
Sbjct:   319 RQEATVLTSHTLPDSLVYGADW 340

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IMP

DICTYBASE|DDB_G0270178 wdr85 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 403 (146.9 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
 Identities = 84/248 (33%), Positives = 134/248 (54%)

Query:    95 LRDITGEKISSS-MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQ--WKAHEFE 151
             L+  T   +S+  + L L+WN S   +    SDG++ +  V +   +V ++  WKAH++E
Sbjct:   125 LKSSTEISLSNDILSLSLDWNKSGDKLICSFSDGNIGLFKVTKDYSKVTEEKRWKAHDYE 184

Query:   152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRE----SPFKLAFQNS-KIHK---MGVCCIAS 203
              W  +F+ H   +V++G DDCKF  WD+ +    +   +    + K  K   MGV  I  
Sbjct:   185 AWICAFNYHDESIVFSGGDDCKFKIWDLNQLLNHNDDDIGIPPTPKFTKRCDMGVTSIHC 244

Query:   204 IPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN 263
              P+  N +  GSYDE LR+WD++S+ +P+  T   LGGG+WRIK HPF    ++ ACM  
Sbjct:   245 HPTIENLIAVGSYDECLRIWDLKSLKQPIITTD-SLGGGIWRIKWHPFQKNKLVTACMGG 303

Query:   264 GFAVVKVGGEKA------EVLETY-AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD 316
             GF ++    E        ++ ++Y   H S+AYG DW   +++ +       +  CSFYD
Sbjct:   304 GFHILSTDPENINDFSTLQIEQSYNGPHKSIAYGVDWSFNKNNFD----KQFIGCCSFYD 359

Query:   317 RLLRIWMP 324
             + L IW+P
Sbjct:   360 KCLSIWIP 367

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-070410-57 wdr85 "WD repeat domain 85" [Danio rerio (taxid:7955)]

 Score = 410 (149.4 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 89/214 (41%), Positives = 128/214 (59%)

Query:    93 GLLRDITGEKISSSMCLCLEWNPS---ATSITVGLSD--GSVSIVSVVESQLEVLQQWKA 147
             GL  +++ +     + L L+W+     ++ + V  SD  GS++++S+ E+ L  + QWKA
Sbjct:   128 GLECELSTDLGPDRLALSLDWSTGRGESSDVRVVSSDSTGSLTLLSLGEADLTAVCQWKA 187

Query:   148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD 207
             HE+E W ++F       VY+G DD K  GWD+R       F  SK H MGVC I S P  
Sbjct:   188 HEYEAWISAFSYWDTQTVYSGGDDSKLKGWDLRMGCSSPTF-TSKRHTMGVCSIHSNPHR 246

Query:   208 SNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAV 267
              + L TGSYDE + +WD R++ +P++ET+V  GGGVWR+K HP    L+LAACMHN F +
Sbjct:   247 EHILATGSYDENVLLWDGRNMKQPLSETAV--GGGVWRLKWHPSQEHLLLAACMHNDFQI 304

Query:   268 V----KVGGEKAE--VLETYAKHGSLAYGADWQR 295
             +     + G++    VL +Y  H SLAYGADW R
Sbjct:   305 LYCQKALEGQETPCPVLGSYILHNSLAYGADWSR 338

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NSA3 WDR85 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 387 (141.3 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
 Identities = 78/179 (43%), Positives = 108/179 (60%)

Query:   125 SDGSVSIVSVVES--QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES 182
             S+G +++ S+ ES   + VL QW+AH+FE W  +F+     +VY+G DD    GWD R +
Sbjct:    74 SEGKLNLFSIDESAPSVHVLNQWEAHKFEAWIAAFNYWNIDIVYSGGDDSLLKGWDTRCN 133

Query:   183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242
             P    F  S+ H MGVC I   P   N L TGSYDE++ +WD R++ +P+ +T V   GG
Sbjct:   134 PETPVF-TSRRHSMGVCSIQCSPHRENLLATGSYDEHVLLWDTRNMKQPLADTHV--EGG 190

Query:   243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE------VLETYAKHGSLAYGADWQR 295
             VWR+K HP    ++LAACM +GF ++   G  AE      +L +Y  H SLAYGADW R
Sbjct:   191 VWRLKWHPTCDFVLLAACMQSGFKILDCRGSMAENTEECVILSSYVLHNSLAYGADWSR 249

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

POMBASE|SPCC18.15 rrt2 "WD repeat protein, involved in diphthamide biosynthesis (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 96/331 (29%), Positives = 161/331 (48%)

Query:     9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG 68
             D  AD  ++     +  VL   TY L E  K  R+G + L++   +E  L+ ++ M    
Sbjct:    15 DWPADVCKY--SQVFEDVLVVGTYMLDESTK-LRHGKLVLYDT--KEDVLKRVFDMHCDA 69

Query:    69 IFDIKWSPVGGNAGPFLAQADADGGL----------LRDITGEKI--SSSMCLCLEWNPS 116
             I D KWSP   +    LA A + G +          L  + G K+  SS + L L+++ S
Sbjct:    70 ILDFKWSPHDASV---LAVAHSTGHVSFYRHQFRAELMFLRGIKVADSSVLMLSLDFSDS 126

Query:   117 ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG 176
                + V +S+GSV I+ + +S + +  +WK H++E W   +     +++Y+G DD     
Sbjct:   127 GKELAVSMSNGSVLIIDI-DSGV-IKNKWKEHDYEAWTCHYSRQDNNLLYSGGDDAALVC 184

Query:   177 WDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS 236
             +D R  P    +++ ++H  GV  I S       + TG Y +++   D R+I KP+   S
Sbjct:   185 YDQR-IPNSCIWRDIQVHHSGVVSILSRAPFGPYIATGEYGDFMHTLDTRNIGKPL--FS 241

Query:   237 VCLGGGVWRIKHHPFIPGL--VLAACMHNGFAVVKVGGEKAEV---LETYAKHGSLAYGA 291
               LGGGVWR++H         VL   MH G  V+++  + + +      + +H S+ YG 
Sbjct:   242 ANLGGGVWRLEHMETTENYHKVLGILMHRGAQVLRISNDFSSIDASKRIFKEHESMCYGG 301

Query:   292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIW 322
             DW         +  + L+ATCSFYD+ + +W
Sbjct:   302 DW---------RHTDGLLATCSFYDKRVCLW 323

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=ISO

GO:0032456 "endocytic recycling" evidence=ISO

GO:0043234 "protein complex" evidence=NAS

CGD|CAL0005473 orf19.2191 [Candida albicans (taxid:5476)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 99/342 (28%), Positives = 160/342 (46%)

Query:    19 PQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG-IFDIKWSP- 76
             PQD+    +   TY L+  D  SR+GS+  ++    +  L L+    T G I DIK++P 
Sbjct:    26 PQDTSK--IFIGTYKLE--DDGSRHGSLDYYSFL--DNKLSLISSTATLGAILDIKFNPS 79

Query:    77 -----VGGNAGPFLAQADADGGLLRDITGEKI-SSSMCLCLEWNPSATS----ITVGLSD 126
                  V  ++   L     D   L       +   ++   + +NP+  S    I +  ++
Sbjct:    80 DPQMLVSAHSNGHLLIWKFDNNTLELSHDANVHEDTLITSIFFNPNKDSNGSVILLTFTN 139

Query:   127 GSVSIVSVVESQLEVLQQWKAHEFELWATSF-DVHQ-PHMVYTGSDDCKFSGWDIRESPF 184
             G   +  + + +++       HE E W  SF ++ Q  ++VYTG DD +    D+R    
Sbjct:   140 GYSGLFDLEKLEIDYFDT--CHELECWTGSFGEIGQLSNVVYTGGDDSQLIAHDLRTKQQ 197

Query:   185 KLAFQNSKIHKMGVCCIASIPSDS------NTLLTGSYDEYLRVWDVRSISK-------- 230
                 +    H  G+  I S P+D+      NTL TGSYD+ LRVWD+R I K        
Sbjct:   198 IWTLRRG--HDAGIVSILS-PNDNWNKTSPNTLWTGSYDDNLRVWDLRVIDKSNPSLISG 254

Query:   231 --PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-HGSL 287
               P   +   LGGGVWR+   P +   +L+ CM++G  ++    +   V   + + H S+
Sbjct:   255 YIPKIISQENLGGGVWRLIPSP-VDNRLLSCCMYDGARIIDANSDSFTVTRYFKQDHQSM 313

Query:   288 AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329
              YG DW     S +GK     +ATCSFYD ++++W P+  C+
Sbjct:   314 CYGGDW-----SSDGK----FIATCSFYDNVVQVWSPDQ-CV 345

GO:0003674 "molecular_function" evidence=ND

GO:0005768 "endosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

GO:0032456 "endocytic recycling" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55C80	WDR85_DICDI	No assigned EC number	0.3018	0.9154	0.8256	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-05

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 65.5 bits (158), Expect = 8e-12
 Identities = 55/310 (17%), Positives = 104/310 (33%), Gaps = 53/310 (17%)

Query: 41  SRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLR--DI 98
           S +G++ L++++   K +  L    +  +  + +SP     G  LA   +  G ++  D+
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSP----DGKLLASGSSLDGTIKLWDL 185

Query: 99  TGEKISSSM------CLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFE 151
              K  S++         L ++P    +    S DG++ +             W     +
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL-------------WDLSTGK 232

Query: 152 LWATSFDVHQ----------PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCI 201
           L  ++   H             ++ +GS D     WD+R S      +    H   V  +
Sbjct: 233 LLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS--SSLLRTLSGHSSSVLSV 290

Query: 202 ASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM 261
           A  P D   L +GS D  +R+WD+ +     + T     G V  +   P    LV     
Sbjct: 291 AFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Query: 262 HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI 321
                +  +   K        +  S      +            +  V +    D  +R+
Sbjct: 350 DGTIRLWDLRTGKPLKTL---EGHSNVLSVSF----------SPDGRVVSSGSTDGTVRL 396

Query: 322 WMPESDCLTR 331
           W   +  L R
Sbjct: 397 WDLSTGSLLR 406

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 24/174 (13%)

Query: 66  TAGIFDIKWSPVGGNAGPFLAQADADG----------GLLRDITGEKISSSMCLCLEWNP 115
           T G+  + +SP G      LA    DG           LLR + G               
Sbjct: 9   TGGVTCVAFSPDG----KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS---A 61

Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
             T +  G SD ++ +  +     E ++    H   + + +F      ++ + S D    
Sbjct: 62  DGTYLASGSSDKTIRLWDL--ETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIK 118

Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS 229
            WD+         +    H   V  +A    D   + + S D  +++WD+R+  
Sbjct: 119 VWDVETGKCLTTLRG---HTDWVNSVA-FSPDGTFVASSSQDGTIKLWDLRTGK 168

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 18/179 (10%)

Query: 60  LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKISSSMCLCLE------ 112
           LL R     I  I +SP     G  L    +DG + L D+   +        L       
Sbjct: 59  LLLRGHEDSITSIAFSP----DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSK 114

Query: 113 ---WNPSATSITVGLSDGSVSI-VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTG 168
               +P   SI +  S    ++ +  + +  ++++  + H   + + +F      +    
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS 174

Query: 169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
           S D     WD+R             H   V  +A  P     + +GS D  +R+WD+ +
Sbjct: 175 SLDGTIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 42/201 (20%), Positives = 78/201 (38%), Gaps = 17/201 (8%)

Query: 41  SRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVG-----GNAGPFLAQADADGGLL 95
           S +G+I L+++ +    L  L    ++ +  + +SP G     G++   +   D + G L
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSG-HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318

Query: 96  RDITGEKISSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWA 154
                 K        L ++P  + +  G S DG++ +  +   +          E     
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT-----LEGHSNV 373

Query: 155 TSFDVHQPHMVY-TGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT 213
            S        V  +GS D     WD+         +N   H   V  +   P D  +L +
Sbjct: 374 LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL---RNLDGHTSRVTSLDFSP-DGKSLAS 429

Query: 214 GSYDEYLRVWDVRSISKPVNE 234
           GS D  +R+WD+++  K V+ 
Sbjct: 430 GSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.9 bits (120), Expect = 4e-07
 Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 41  SRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDIT 99
           S +G+I L++++  +     L     + +    +SP G      LA   +DG + L D+ 
Sbjct: 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSVV--SSFSPDG----SLLASGSSDGTIRLWDLR 271

Query: 100 GEKIS-------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFEL 152
                       SS  L + ++P    +  G SDG+V +  +   +L      K HE  +
Sbjct: 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331

Query: 153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL 212
            + SF      +V  GSDD     WD+R            +         S   D   + 
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK-----TLEGHSNVLSVSFSPDGRVVS 386

Query: 213 TGSYDEYLRVWDVRSISKPVNETS 236
           +GS D  +R+WD+ + S   N   
Sbjct: 387 SGSTDGTVRLWDLSTGSLLRNLDG 410

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 26/194 (13%)

Query: 41  SRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD--------- 91
           SR+ +I +++V   +    L     T  +  + +SP G     F+A +  D         
Sbjct: 112 SRDKTIKVWDVETGKCLTTLRGH--TDWVNSVAFSPDGT----FVASSSQDGTIKLWDLR 165

Query: 92  -GGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF 150
            G  +  +TG          + ++P    +    SDG++ +  +   +   L   + HE 
Sbjct: 166 TGKCVATLTGHTGE---VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC--LGTLRGHEN 220

Query: 151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT 210
            + + +F     +++ +GS+D     WD+R             H   V  +A  P D   
Sbjct: 221 GVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECVQTLSG---HTNSVTSLAWSP-DGKR 275

Query: 211 LLTGSYDEYLRVWD 224
           L +GS D  +R+WD
Sbjct: 276 LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 38/257 (14%)

Query: 10  GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGI 69
           G+   V      +    LA+           S + +I L+++   E          T+ +
Sbjct: 49  GHTGPVRDVAASADGTYLASG----------SSDKTIRLWDLETGECVRT--LTGHTSYV 96

Query: 70  FDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKISSSM------CLCLEWNPSATSITV 122
             + +SP     G  L+ +  D  + + D+   K  +++         + ++P  T +  
Sbjct: 97  SSVAFSP----DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Query: 123 GLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES 182
              DG++ +  +     + +     H  E+ + +F       + + S D     WD+   
Sbjct: 153 SSQDGTIKLWDL--RTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTG 209

Query: 183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG- 241
                 +    H+ GV  +A  P D   L +GS D  +RVWD+R+      E    L G 
Sbjct: 210 KCLGTLR---GHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRT-----GECVQTLSGH 260

Query: 242 --GVWRIKHHPFIPGLV 256
              V  +   P    L 
Sbjct: 261 TNSVTSLAWSPDGKRLA 277

Length = 289

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 97  DITGEKISSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT 155
           ++      S +C    WN    S +     +G V +  V  SQL  + + K HE  +W+ 
Sbjct: 528 ELASRSKLSGIC----WNSYIKSQVASSNFEGVVQVWDVARSQL--VTEMKEHEKRVWSI 581

Query: 156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN-TLLTG 214
            +    P ++ +GSDD     W I +    ++    K  K  +CC+   PS+S  +L  G
Sbjct: 582 DYSSADPTLLASGSDDGSVKLWSINQG---VSIGTIKT-KANICCV-QFPSESGRSLAFG 636

Query: 215 SYDEYLRVWDVRSISKPV 232
           S D  +  +D+R+   P+
Sbjct: 637 SADHKVYYYDLRNPKLPL 654

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0280	339	consensus Uncharacterized conserved protein [Amino	100.0
KOG0269	839	consensus WD40 repeat-containing protein [Function	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
PTZ00421	493	coronin; Provisional	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0641	350	consensus WD40 repeat protein [General function pr	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG4328	498	consensus WD40 protein [Function unknown]	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG4227	609	consensus WD40 repeat protein [General function pr	99.92
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.91
KOG1188	376	consensus WD40 repeat protein [General function pr	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG0649	325	consensus WD40 repeat protein [General function pr	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.87
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.86
KOG4227	609	consensus WD40 repeat protein [General function pr	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.86
KOG1963	792	consensus WD40 repeat protein [General function pr	99.86
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.8
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.8
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.8
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.79
KOG1334	559	consensus WD40 repeat protein [General function pr	99.79
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.79
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.79
COG2319	466	FOG: WD40 repeat [General function prediction only	99.79
KOG1310	758	consensus WD40 repeat protein [General function pr	99.79
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.78
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.77
KOG1334	559	consensus WD40 repeat protein [General function pr	99.77
KOG2139	445	consensus WD40 repeat protein [General function pr	99.77
KOG2321	703	consensus WD40 repeat protein [General function pr	99.77
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG1963	792	consensus WD40 repeat protein [General function pr	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.72
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.7
PRK03629	429	tolB translocation protein TolB; Provisional	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.67
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
PRK04922	433	tolB translocation protein TolB; Provisional	99.66
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.65
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.65
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.65
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.64
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.64
PRK02889	427	tolB translocation protein TolB; Provisional	99.64
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.63
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.62
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
PRK05137	435	tolB translocation protein TolB; Provisional	99.58
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.57
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.55
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.54
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.54
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.52
KOG4547	541	consensus WD40 repeat-containing protein [General	99.5
PRK00178	430	tolB translocation protein TolB; Provisional	99.49
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.47
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.46
PRK04792	448	tolB translocation protein TolB; Provisional	99.45
PRK02889	427	tolB translocation protein TolB; Provisional	99.42
KOG2315	566	consensus Predicted translation initiation factor	99.42
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.41
KOG2321	703	consensus WD40 repeat protein [General function pr	99.41
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.41
PRK01029	428	tolB translocation protein TolB; Provisional	99.4
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.38
KOG4547	541	consensus WD40 repeat-containing protein [General	99.38
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.38
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.36
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.35
PRK04792	448	tolB translocation protein TolB; Provisional	99.34
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.34
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.31
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.29
KOG2314	698	consensus Translation initiation factor 3, subunit	99.29
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.29
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.29
KOG2315	566	consensus Predicted translation initiation factor	99.26
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.26
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.25
PRK01029	428	tolB translocation protein TolB; Provisional	99.25
KOG2314	698	consensus Translation initiation factor 3, subunit	99.24
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.21
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.21
COG4946	668	Uncharacterized protein related to the periplasmic	99.21
PRK00178	430	tolB translocation protein TolB; Provisional	99.2
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.2
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.18
KOG2695	425	consensus WD40 repeat protein [General function pr	99.16
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.11
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.08
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.08
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.08
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.07
PRK04043	419	tolB translocation protein TolB; Provisional	99.07
COG4946	668	Uncharacterized protein related to the periplasmic	99.04
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.04
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.01
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.01
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.99
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.99
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.99
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.97
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.97
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.96
KOG2695	425	consensus WD40 repeat protein [General function pr	98.94
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.93
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.93
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.86
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.85
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.83
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.83
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.82
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.81
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.8
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.76
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.75
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.74
PRK04043	419	tolB translocation protein TolB; Provisional	98.71
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.67
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.64
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.63
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.62
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.61
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.6
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.57
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.56
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.53
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.51
KOG3621	726	consensus WD40 repeat-containing protein [General	98.49
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.47
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.47
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.45
KOG3621	726	consensus WD40 repeat-containing protein [General	98.43
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.43
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.41
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.32
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.3
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.27
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.23
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.2
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.16
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.14
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.13
PRK02888	635	nitrous-oxide reductase; Validated	98.12
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.09
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.07
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.0
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.98
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.92
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.9
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.9
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.85
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.84
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.84
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.8
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.79
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.74
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.69
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.67
PRK02888	635	nitrous-oxide reductase; Validated	97.66
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.62
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.62
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.6
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.51
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.5
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.46
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.38
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.34
KOG2444	238	consensus WD40 repeat protein [General function pr	97.32
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.3
PHA02713	557	hypothetical protein; Provisional	97.23
PRK13616	591	lipoprotein LpqB; Provisional	97.21
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.21
PHA02713	557	hypothetical protein; Provisional	97.13
KOG2395	644	consensus Protein involved in vacuole import and d	97.09
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.06
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.02
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.97
KOG2444	238	consensus WD40 repeat protein [General function pr	96.96
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.96
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.94
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.9
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.85
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.85
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.83
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.8
PRK13616	591	lipoprotein LpqB; Provisional	96.79
KOG2395	644	consensus Protein involved in vacuole import and d	96.7
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.66
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.62
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.59
COG3391	381	Uncharacterized conserved protein [Function unknow	96.55
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.54
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.49
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.45
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.37
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.33
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.33
PHA03098	534	kelch-like protein; Provisional	96.31
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.22
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.22
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.15
COG5276	370	Uncharacterized conserved protein [Function unknow	96.13
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.09
PHA03098	534	kelch-like protein; Provisional	96.04
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.0
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.96
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	95.92
COG3391	381	Uncharacterized conserved protein [Function unknow	95.85
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.83
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.82
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.69
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.63
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.63
KOG2247	615	consensus WD40 repeat-containing protein [General	95.52
PHA02790	480	Kelch-like protein; Provisional	95.48
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.12
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.09
PRK13684	334	Ycf48-like protein; Provisional	95.05
PHA02790	480	Kelch-like protein; Provisional	95.01
PRK10115	686	protease 2; Provisional	94.96
COG5276	370	Uncharacterized conserved protein [Function unknow	94.9
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.77
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.75
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.66
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.66
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.66
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.65
PRK10115	686	protease 2; Provisional	94.56
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.48
KOG2247	615	consensus WD40 repeat-containing protein [General	94.42
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.41
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.2
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.12
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.04
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.79
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.69
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.64
COG4590	733	ABC-type uncharacterized transport system, permeas	93.11
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.08
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.07
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.59
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.55
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.36
COG5167	776	VID27 Protein involved in vacuole import and degra	92.36
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.36
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.15
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.05
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.04
PRK13684	334	Ycf48-like protein; Provisional	91.48
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.43
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.05
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.81
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.75
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.71
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.58
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.57
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.07
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.0
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.78
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	89.65
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	89.5
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	88.51
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.48
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.46
PF12768	281	Rax2: Cortical protein marker for cell polarity	88.06
COG5167	776	VID27 Protein involved in vacuole import and degra	87.98
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.93
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.86
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.7
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.28
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	86.04
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.04
PF14727	418	PHTB1_N: PTHB1 N-terminus	85.36
PLN02193	470	nitrile-specifier protein	85.29
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	85.09
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.82
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	84.75
PLN02193	470	nitrile-specifier protein	84.39
PF13449	326	Phytase-like: Esterase-like activity of phytase	84.34
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	84.3
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	83.92
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	83.33
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	82.88
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.53
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	81.48
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	81.23
COG4590	733	ABC-type uncharacterized transport system, permeas	81.16
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	80.54
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	80.45

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-49  Score=306.51  Aligned_cols=280  Identities=19%  Similarity=0.334  Sum_probs=247.1

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      +++-|++|+|.+   ..||+|+          .|.++++||+.+.. ++ ...++|...|.+++|+|+    ++.||+|+
T Consensus       116 e~Vl~~~fsp~g---~~l~tGs----------GD~TvR~WD~~TeT-p~-~t~KgH~~WVlcvawsPD----gk~iASG~  176 (480)
T KOG0271|consen  116 EAVLSVQFSPTG---SRLVTGS----------GDTTVRLWDLDTET-PL-FTCKGHKNWVLCVAWSPD----GKKIASGS  176 (480)
T ss_pred             CcEEEEEecCCC---ceEEecC----------CCceEEeeccCCCC-cc-eeecCCccEEEEEEECCC----cchhhccc
Confidence            455666666654   8999998          89999999999986 44 445899999999999999    99999999


Q ss_pred             CCccE-EEecCCCcc-------cCccEEEEEEcC-----CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107           90 ADGGL-LRDITGEKI-------SSSMCLCLEWNP-----SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~-------~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  156 (331)
                      .||.| +|+..+++.       |...|++++|.|     ..++|++++.||.|+|||+..++  ++..+.+|..+|+|+.
T Consensus       177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~--~~~~lsgHT~~VTCvr  254 (480)
T KOG0271|consen  177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT--CVRTLSGHTASVTCVR  254 (480)
T ss_pred             cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce--EEEEeccCccceEEEE
Confidence            99999 999887664       789999999976     56789999999999999998774  4888999999999999


Q ss_pred             eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe-----------c--------------------
Q 020107          157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI-----------P--------------------  205 (331)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~--------------------  205 (331)
                      |-  ...++++|+.|++|++|+...+.+...++.   |...|+.++.+           |                    
T Consensus       255 wG--G~gliySgS~DrtIkvw~a~dG~~~r~lkG---HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~  329 (480)
T KOG0271|consen  255 WG--GEGLIYSGSQDRTIKVWRALDGKLCRELKG---HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE  329 (480)
T ss_pred             Ec--CCceEEecCCCceEEEEEccchhHHHhhcc---cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence            96  468999999999999999999988888887   99999999877           2                    


Q ss_pred             ----CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe
Q 020107          206 ----SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY  281 (331)
Q Consensus       206 ----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (331)
                          +.+..|++|+.|.++.+|+....++|+.. +.+|..-|+.+.|+|++ .++++++.|..+++|+...  ++.+.+|
T Consensus       330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r-mtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~t--Gk~lasf  405 (480)
T KOG0271|consen  330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR-MTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRT--GKFLASF  405 (480)
T ss_pred             HhhccCcceeEEecCCceEEEecccccccchhh-hhchhhheeeEEECCCc-cEEEEeecccceeeeeCCC--cchhhhh
Confidence                02235999999999999999887778876 78999999999999997 6777778888889998877  7999999


Q ss_pred             ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          282 AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       282 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +||-.+|+.++|+.|.         ++|+||+ .|.++++|++.+..+
T Consensus       406 RGHv~~VYqvawsaDs---------RLlVS~S-kDsTLKvw~V~tkKl  443 (480)
T KOG0271|consen  406 RGHVAAVYQVAWSADS---------RLLVSGS-KDSTLKVWDVRTKKL  443 (480)
T ss_pred             hhccceeEEEEeccCc---------cEEEEcC-CCceEEEEEeeeeee
Confidence            9999999999999998         8999999 999999999988754

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.9e-49  Score=309.56  Aligned_cols=278  Identities=21%  Similarity=0.274  Sum_probs=248.6

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      +.|+..+.|++++   +.||+|+          -+|.++||+....+  ....+.+|...|.++.|+|...  +..+|+|
T Consensus       175 ~rPis~~~fS~ds---~~laT~s----------wsG~~kvW~~~~~~--~~~~l~gH~~~v~~~~fhP~~~--~~~lat~  237 (459)
T KOG0272|consen  175 TRPISGCSFSRDS---KHLATGS----------WSGLVKVWSVPQCN--LLQTLRGHTSRVGAAVFHPVDS--DLNLATA  237 (459)
T ss_pred             CCcceeeEeecCC---CeEEEee----------cCCceeEeecCCcc--eeEEEeccccceeeEEEccCCC--ccceeee
Confidence            4577888888887   8999999          59999999999884  5566799999999999999831  5689999


Q ss_pred             cCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107           89 DADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (331)
                      +.||++ +|++.+...      |...|..++|+|+|++|++++.|.+-++||++++..  +....+|...|.+++|+| +
T Consensus       238 s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E--lL~QEGHs~~v~~iaf~~-D  314 (459)
T KOG0272|consen  238 SADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE--LLLQEGHSKGVFSIAFQP-D  314 (459)
T ss_pred             ccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh--hHhhcccccccceeEecC-C
Confidence            999999 999988543      788999999999999999999999999999999754  566789999999999998 9


Q ss_pred             CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107          162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG  241 (331)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  241 (331)
                      +.++++|+.|..-+|||+|+++++..+..   |..+|.+|+|+| +|..||||+.|++++|||++.. .++.. ..+|..
T Consensus       315 GSL~~tGGlD~~~RvWDlRtgr~im~L~g---H~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r-~~ly~-ipAH~n  388 (459)
T KOG0272|consen  315 GSLAATGGLDSLGRVWDLRTGRCIMFLAG---HIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMR-SELYT-IPAHSN  388 (459)
T ss_pred             CceeeccCccchhheeecccCcEEEEecc---cccceeeEeECC-CceEEeecCCCCcEEEeeeccc-cccee-cccccc
Confidence            99999999999999999999999888887   999999999999 9999999999999999999985 44444 689999


Q ss_pred             ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107          242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI  321 (331)
Q Consensus       242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i  321 (331)
                      -|+.++|+|....++++++.|+.+++|.-..  ..+++++.||.+.|.+++.++++         ++|+|++ .|+++++
T Consensus       389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~---------~~i~t~s-~DRT~KL  456 (459)
T KOG0272|consen  389 LVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDS---------QAIATSS-FDRTIKL  456 (459)
T ss_pred             hhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCC---------ceEEEec-cCceeee
Confidence            9999999996657777777888878877665  78999999999999999999999         7999999 9999999


Q ss_pred             EcC
Q 020107          322 WMP  324 (331)
Q Consensus       322 W~~  324 (331)
                      |..
T Consensus       457 W~~  459 (459)
T KOG0272|consen  457 WRP  459 (459)
T ss_pred             ccC
Confidence            963

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-44  Score=279.83  Aligned_cols=284  Identities=19%  Similarity=0.323  Sum_probs=240.3

Q ss_pred             eeeeecCc---ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCC
Q 020107            4 AHCELDGN---ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGN   80 (331)
Q Consensus         4 ~~~~~~~~---~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (331)
                      +.++..+|   +.||+|+|++   ..||+|+          .||.|++||.++++ ++...+++|...|++++|.|-+..
T Consensus       149 p~~t~KgH~~WVlcvawsPDg---k~iASG~----------~dg~I~lwdpktg~-~~g~~l~gH~K~It~Lawep~hl~  214 (480)
T KOG0271|consen  149 PLFTCKGHKNWVLCVAWSPDG---KKIASGS----------KDGSIRLWDPKTGQ-QIGRALRGHKKWITALAWEPLHLV  214 (480)
T ss_pred             cceeecCCccEEEEEEECCCc---chhhccc----------cCCeEEEecCCCCC-cccccccCcccceeEEeecccccC
Confidence            34455565   5677777766   8999999          89999999999887 566667999999999999885321


Q ss_pred             -CCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccccee
Q 020107           81 -AGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFEL  152 (331)
Q Consensus        81 -~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v  152 (331)
                       ..++||+++.||.+ ||++..+.+      |..+|+|+.|--+ .+|++|+.|++|++|+...+++  ..++++|...|
T Consensus       215 p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~--~r~lkGHahwv  291 (480)
T KOG0271|consen  215 PPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKL--CRELKGHAHWV  291 (480)
T ss_pred             CCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhH--HHhhcccchhe
Confidence             15699999999999 999988654      7899999999643 5799999999999999998865  88999999999


Q ss_pred             EEEeeC-----------C------------------------CCCcEEEEEcCCCeEEEEEccCCC-ceeeeecccCCCc
Q 020107          153 WATSFD-----------V------------------------HQPHMVYTGSDDCKFSGWDIRESP-FKLAFQNSKIHKM  196 (331)
Q Consensus       153 ~~~~~~-----------~------------------------~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~  196 (331)
                      +.++.+           |                        +.+..+++|++|.++.+|+....+ ++..+..   |+.
T Consensus       292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg---Hq~  368 (480)
T KOG0271|consen  292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG---HQA  368 (480)
T ss_pred             eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc---hhh
Confidence            999887           1                        122369999999999999987554 3445555   999


Q ss_pred             ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc
Q 020107          197 GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE  276 (331)
Q Consensus       197 ~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (331)
                      -|+.+.|+| ++.++|+++.|..|++||.++++. +.. +.+|-++|+.++|+.|. .++++++.|..+++|++..  .+
T Consensus       369 lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~-las-fRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~t--kK  442 (480)
T KOG0271|consen  369 LVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKF-LAS-FRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRT--KK  442 (480)
T ss_pred             heeeEEECC-CccEEEEeecccceeeeeCCCcch-hhh-hhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeee--ee
Confidence            999999999 999999999999999999999744 444 58899999999999996 6666777788899999988  47


Q ss_pred             eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107          277 VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       277 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~  323 (331)
                      +...+.||.+.|++++|+|+|         +.+++|+ .|..+++|.
T Consensus       443 l~~DLpGh~DEVf~vDwspDG---------~rV~sgg-kdkv~~lw~  479 (480)
T KOG0271|consen  443 LKQDLPGHADEVFAVDWSPDG---------QRVASGG-KDKVLRLWR  479 (480)
T ss_pred             ecccCCCCCceEEEEEecCCC---------ceeecCC-CceEEEeec
Confidence            888899999999999999999         6999999 999999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.9e-43  Score=262.24  Aligned_cols=279  Identities=18%  Similarity=0.269  Sum_probs=239.7

Q ss_pred             eeeecCcc---eeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCC
Q 020107            5 HCELDGNA---DAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNA   81 (331)
Q Consensus         5 ~~~~~~~~---~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   81 (331)
                      +..|.||.   .++.|+++.   +++++++          .||.+.|||.-+.. +...+ +.....|..++|+|.    
T Consensus        48 rr~LkGH~~Ki~~~~ws~Ds---r~ivSaS----------qDGklIvWDs~Ttn-K~hai-pl~s~WVMtCA~sPS----  108 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDS---RRIVSAS----------QDGKLIVWDSFTTN-KVHAI-PLPSSWVMTCAYSPS----  108 (343)
T ss_pred             EEEecccccceeeeEecCCc---CeEEeec----------cCCeEEEEEccccc-ceeEE-ecCceeEEEEEECCC----
Confidence            34666665   555666665   8999998          89999999988765 33333 556778999999999    


Q ss_pred             CCeEEEEcCCccE-EEecCCCc------------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc
Q 020107           82 GPFLAQADADGGL-LRDITGEK------------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH  148 (331)
Q Consensus        82 ~~~l~~~~~dg~i-iw~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  148 (331)
                      ++++|+|+-|... |+++.+.+            .|.+.+.|+.|-+ ...|++++.|.+..+||+++++.  +..|.+|
T Consensus       109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~--~~~f~GH  185 (343)
T KOG0286|consen  109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQ--TQVFHGH  185 (343)
T ss_pred             CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceE--EEEecCC
Confidence            9999999999999 99888541            1677888999987 56799999999999999999865  8899999


Q ss_pred             cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107          149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      .+.|.+++++|.+++.+++|+.|+..++||+|.+.+.+.|..   |...|+++.|.| ++.-|++|+.|++.++||+|..
T Consensus       186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g---hesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD  261 (343)
T KOG0286|consen  186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG---HESDINSVRFFP-SGDAFATGSDDATCRLYDLRAD  261 (343)
T ss_pred             cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc---cccccceEEEcc-CCCeeeecCCCceeEEEeecCC
Confidence            999999999998899999999999999999999999999888   999999999999 9999999999999999999985


Q ss_pred             CCCcee-eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCc
Q 020107          229 SKPVNE-TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNS  307 (331)
Q Consensus       229 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  307 (331)
                       +.+.. .......+|++++|+..| .+++++..+.++.+|+.-.  ++.+..+.+|.+.|+++..+|+|         .
T Consensus       262 -~~~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk--~e~vg~L~GHeNRvScl~~s~DG---------~  328 (343)
T KOG0286|consen  262 -QELAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLK--GERVGVLAGHENRVSCLGVSPDG---------M  328 (343)
T ss_pred             -cEEeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccc--cceEEEeeccCCeeEEEEECCCC---------c
Confidence             43433 122345689999999997 7777777888888998877  68888999999999999999999         6


Q ss_pred             EEEEeecCCCeEEEEc
Q 020107          308 LVATCSFYDRLLRIWM  323 (331)
Q Consensus       308 ~l~s~~~~d~~i~iW~  323 (331)
                      .++||+ +|.+||||.
T Consensus       329 av~TgS-WDs~lriW~  343 (343)
T KOG0286|consen  329 AVATGS-WDSTLRIWA  343 (343)
T ss_pred             EEEecc-hhHheeecC
Confidence            999999 999999995

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-43  Score=258.19  Aligned_cols=289  Identities=24%  Similarity=0.399  Sum_probs=243.5

Q ss_pred             cCcceeEeeecCCCCCcEEEEEe--ecccCCCCCCCCCcEEEEeccCcccceEEeEeee-cCcEeEEEEcCCCCCCCCeE
Q 020107            9 DGNADAVEFCPQDSYHHVLAAST--YTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD-TAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~--~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l   85 (331)
                      ..+-++|+|+|+-+  ++||+++  .-+..     .+|++.|.++...+ .+....... ...+.+++|++..   ...+
T Consensus         8 gf~GysvqfSPf~~--nrLavAt~q~yGl~-----G~G~L~ile~~~~~-gi~e~~s~d~~D~LfdV~Wse~~---e~~~   76 (311)
T KOG0277|consen    8 GFHGYSVQFSPFVE--NRLAVATAQHYGLA-----GNGRLFILEVTDPK-GIQECQSYDTEDGLFDVAWSENH---ENQV   76 (311)
T ss_pred             CcccceeEeccccc--chhheeehhhcccc-----cCceEEEEecCCCC-CeEEEEeeecccceeEeeecCCC---cceE
Confidence            46789999999988  5555554  22222     38999999997443 355544433 5679999999987   6699


Q ss_pred             EEEcCCccE-EEecCCCc-------ccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107           86 AQADADGGL-LRDITGEK-------ISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        86 ~~~~~dg~i-iw~~~~~~-------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  156 (331)
                      ++++.||++ +|++....       .|+..|.++.|++.. ..+++++.|++|++|+...+  ..+.++.+|...|...+
T Consensus        77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv~Tf~gh~~~Iy~a~  154 (311)
T KOG0277|consen   77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSVQTFNGHNSCIYQAA  154 (311)
T ss_pred             EEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--cceEeecCCccEEEEEe
Confidence            999999999 99965432       378999999999854 55788889999999999866  44889999999999999


Q ss_pred             eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107          157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  236 (331)
                      |+|..++++++++.|+++++||++.......+..   |...|.++.|+..+.++++||+.|+.|+.||+++.+.|+.+ +
T Consensus       155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a---h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e-L  230 (311)
T KOG0277|consen  155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA---HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE-L  230 (311)
T ss_pred             cCCCCCCeEEEccCCceEEEEEecCCCceeEEEe---ccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee-e
Confidence            9999999999999999999999998765555555   99999999999989999999999999999999999899888 5


Q ss_pred             eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC
Q 020107          237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD  316 (331)
Q Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d  316 (331)
                      .+|.-.|..++|+|....++++++.|-.+++|+.... ...+.+...|++-|.+++|++..+        .++|++| .|
T Consensus       231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~-ds~~e~~~~HtEFv~g~Dws~~~~--------~~vAs~g-WD  300 (311)
T KOG0277|consen  231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ-DSAIETVDHHTEFVCGLDWSLFDP--------GQVASTG-WD  300 (311)
T ss_pred             cCCceEEEEEecCcchhhHhhhccccceEEecccccc-hhhhhhhhccceEEeccccccccC--------ceeeecc-cc
Confidence            8999999999999998677777777777888887754 566777888999999999999887        8999999 99


Q ss_pred             CeEEEEcC
Q 020107          317 RLLRIWMP  324 (331)
Q Consensus       317 ~~i~iW~~  324 (331)
                      +.++||+.
T Consensus       301 e~l~Vw~p  308 (311)
T KOG0277|consen  301 ELLYVWNP  308 (311)
T ss_pred             cceeeecc
Confidence            99999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.3e-44  Score=280.16  Aligned_cols=277  Identities=20%  Similarity=0.328  Sum_probs=245.0

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      +-++..|.|.|.+   +.|++|+          ..|.+.+|+...-.  ++.+...|..+|++|.|+++    +.++++|
T Consensus        96 kc~V~~v~WtPeG---RRLltgs----------~SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws~~----g~wmiSg  156 (464)
T KOG0284|consen   96 KCPVNVVRWTPEG---RRLLTGS----------QSGEFTLWNGTSFN--FETILQAHDSPVRTMKWSHN----GTWMISG  156 (464)
T ss_pred             ccceeeEEEcCCC---ceeEeec----------ccccEEEecCceee--HHHHhhhhcccceeEEEccC----CCEEEEc
Confidence            3467889999887   8999998          79999999987664  77778899999999999999    9999999


Q ss_pred             cCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107           89 DADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (331)
                      +.+|.| +|+..-...      |...|.+++|+|+...+++++.||+|+|||....+.  ...+.+|.-.|.+++|+| .
T Consensus       157 D~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke--e~vL~GHgwdVksvdWHP-~  233 (464)
T KOG0284|consen  157 DKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE--ERVLRGHGWDVKSVDWHP-T  233 (464)
T ss_pred             CCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch--hheeccCCCCcceeccCC-c
Confidence            999999 998876543      458999999999999999999999999999987654  566799999999999999 7


Q ss_pred             CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107          162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG  241 (331)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  241 (331)
                      ..++++++.|..|++||.+++.++..+..   |+..|..+.|+| ++++|++++.|..++++|+++++....  ..+|..
T Consensus       234 kgLiasgskDnlVKlWDprSg~cl~tlh~---HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~--~r~Hkk  307 (464)
T KOG0284|consen  234 KGLIASGSKDNLVKLWDPRSGSCLATLHG---HKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFT--YRGHKK  307 (464)
T ss_pred             cceeEEccCCceeEeecCCCcchhhhhhh---ccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHH--hhcchh
Confidence            78999999999999999999999988887   999999999999 889999999999999999997644444  388999


Q ss_pred             ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe-ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107          242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY-AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR  320 (331)
Q Consensus       242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~  320 (331)
                      .|+++.|+|-.++++.++|.++.+..|.+...  +++..+ .+|...|++++|+|-|         .+|++|+ .|.+++
T Consensus       308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~--~p~~~i~~AHd~~iwsl~~hPlG---------hil~tgs-nd~t~r  375 (464)
T KOG0284|consen  308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE--EPLGEIPPAHDGEIWSLAYHPLG---------HILATGS-NDRTVR  375 (464)
T ss_pred             hheeeccccccccceeeccCCCceEEEecccc--ccccCCCcccccceeeeeccccc---------eeEeecC-CCccee
Confidence            99999999998899999999999888888743  333333 3799999999999999         7999999 999999


Q ss_pred             EEcCC
Q 020107          321 IWMPE  325 (331)
Q Consensus       321 iW~~~  325 (331)
                      +|.-.
T Consensus       376 fw~r~  380 (464)
T KOG0284|consen  376 FWTRN  380 (464)
T ss_pred             eeccC
Confidence            99753

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-40  Score=243.65  Aligned_cols=281  Identities=17%  Similarity=0.260  Sum_probs=233.6

Q ss_pred             eeecCcce---eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCC
Q 020107            6 CELDGNAD---AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGG   79 (331)
Q Consensus         6 ~~~~~~~~---~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~   79 (331)
                      -++++|..   .++-.+.++  +.+..++          +|..+.+|++......   ....+++|...|..+..+++  
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~--~~l~sas----------rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d--   74 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNS--DILVSAS----------RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD--   74 (315)
T ss_pred             eeecCCCceEEEEEeecCCC--ceEEEcc----------cceEEEEEEeccCccccCceeeeeeccceEecceEEccC--
Confidence            35666554   445555544  7888888          8999999999865433   35566889999999999999  


Q ss_pred             CCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee--cccc
Q 020107           80 NAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK--AHEF  150 (331)
Q Consensus        80 ~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~  150 (331)
                        +.+.++++.|+++ +||+.+++.      |...|.+++|+++.+.+++|+.|.+|.+|+.....   ..++.  .+..
T Consensus        75 --g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c---k~t~~~~~~~~  149 (315)
T KOG0279|consen   75 --GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC---KYTIHEDSHRE  149 (315)
T ss_pred             --CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE---EEEEecCCCcC
Confidence              9999999999999 999999754      78899999999999999999999999999998643   23333  2378


Q ss_pred             eeEEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107          151 ELWATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       151 ~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      .|.|+.|+|.. ...|++++.|++|++||+++.+....+..   |++.++.++++| ||.++++|+.||.+.+||++.. 
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g---h~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~-  224 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG---HSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEG-  224 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc---ccccEEEEEECC-CCCEEecCCCCceEEEEEccCC-
Confidence            89999999953 67899999999999999998877666666   999999999999 9999999999999999999986 


Q ss_pred             CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee----cC-----CcceeeeeecCCCCcc
Q 020107          230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA----KH-----GSLAYGADWQRGRSSL  300 (331)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h-----~~~v~~~~~~~~~~~~  300 (331)
                      +.+..  ..+...|.+++|+|+  .+.++.+....|+||++...  ..+.+++    +.     .-...+++|+++|   
T Consensus       225 k~lys--l~a~~~v~sl~fspn--rywL~~at~~sIkIwdl~~~--~~v~~l~~d~~g~s~~~~~~~clslaws~dG---  295 (315)
T KOG0279|consen  225 KNLYS--LEAFDIVNSLCFSPN--RYWLCAATATSIKIWDLESK--AVVEELKLDGIGPSSKAGDPICLSLAWSADG---  295 (315)
T ss_pred             ceeEe--ccCCCeEeeEEecCC--ceeEeeccCCceEEEeccch--hhhhhccccccccccccCCcEEEEEEEcCCC---
Confidence            45555  789999999999999  78888888888999999874  4444333    21     3356789999999   


Q ss_pred             cccccCcEEEEeecCCCeEEEEcCCC
Q 020107          301 EGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       301 ~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                            ..|.++- .|+.|++|.+..
T Consensus       296 ------~tLf~g~-td~~irv~qv~~  314 (315)
T KOG0279|consen  296 ------QTLFAGY-TDNVIRVWQVAK  314 (315)
T ss_pred             ------cEEEeee-cCCcEEEEEeec
Confidence                  6888888 899999998753

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.9e-42  Score=267.68  Aligned_cols=242  Identities=21%  Similarity=0.237  Sum_probs=216.7

Q ss_pred             eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCC--CCeEEEEecCCeEEEEE
Q 020107           63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPS--ATSITVGLSDGSVSIVS  133 (331)
Q Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d  133 (331)
                      .+.+.+|..+.|+++    ++.|++|+.+|.+ +|+....+.      |...+.++.|+|.  +..+++++.||++++|+
T Consensus       172 ~gd~rPis~~~fS~d----s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~  247 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRD----SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK  247 (459)
T ss_pred             ccCCCcceeeEeecC----CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence            455778999999999    9999999999999 999887643      7899999999997  56799999999999999


Q ss_pred             ccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107          134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT  213 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  213 (331)
                      +.+.  .++..+.+|...|..++|+| ++++|++++.|.+-++||++++........   |...|.+++|+| +|.+++|
T Consensus       248 ~~~e--~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEG---Hs~~v~~iaf~~-DGSL~~t  320 (459)
T KOG0272|consen  248 LSQE--TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEG---HSKGVFSIAFQP-DGSLAAT  320 (459)
T ss_pred             cCCC--cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcc---cccccceeEecC-CCceeec
Confidence            9876  45889999999999999999 999999999999999999999876555554   999999999999 9999999


Q ss_pred             EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeee
Q 020107          214 GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADW  293 (331)
Q Consensus       214 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  293 (331)
                      |+.|..-+|||+|++...+.  +.+|..+|.++.|+|+| ..++++++|+.++||+++..  +.+.++.+|.+.|+.+.|
T Consensus       321 GGlD~~~RvWDlRtgr~im~--L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r--~~ly~ipAH~nlVS~Vk~  395 (459)
T KOG0272|consen  321 GGLDSLGRVWDLRTGRCIMF--LAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR--SELYTIPAHSNLVSQVKY  395 (459)
T ss_pred             cCccchhheeecccCcEEEE--ecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc--ccceecccccchhhheEe
Confidence            99999999999999755444  48899999999999997 77777788999999999985  668999999999999999


Q ss_pred             cCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          294 QRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       294 ~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +|...        .+|+|+| .|++++||...+...
T Consensus       396 ~p~~g--------~fL~Tas-yD~t~kiWs~~~~~~  422 (459)
T KOG0272|consen  396 SPQEG--------YFLVTAS-YDNTVKIWSTRTWSP  422 (459)
T ss_pred             cccCC--------eEEEEcc-cCcceeeecCCCccc
Confidence            99554        8999999 999999999887654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.5e-39  Score=238.49  Aligned_cols=276  Identities=16%  Similarity=0.256  Sum_probs=229.0

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc-cc-eEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE-KN-LELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+..++|+|-.  |.+||+++          .|..|++|+..... .. ...+-.+|+..|++++|+|.    +++|++|
T Consensus        16 r~W~~awhp~~--g~ilAscg----------~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~----g~~La~a   79 (312)
T KOG0645|consen   16 RVWSVAWHPGK--GVILASCG----------TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH----GRYLASA   79 (312)
T ss_pred             cEEEEEeccCC--ceEEEeec----------CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC----CcEEEEe
Confidence            45577777763  37999998          89999999998522 11 23344679999999999999    9999999


Q ss_pred             cCCccE-EEecCCC--------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-cceeeeeeeecccceeEEEeeC
Q 020107           89 DADGGL-LRDITGE--------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-SQLEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus        89 ~~dg~i-iw~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~  158 (331)
                      +.|.++ ||.-...        +.|...|.|++|+++|++||+++.|.+|-||.+.. .+..+...++.|...|..+.|+
T Consensus        80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH  159 (312)
T KOG0645|consen   80 SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH  159 (312)
T ss_pred             eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence            999999 8876643        34789999999999999999999999999999875 5667788899999999999999


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCC---CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRES---PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  235 (331)
                      | ...+|++++.|.+|++|+-..+   .+.+.+..   |...|.+++|+| .+..|++++.|++++||-....   +   
T Consensus       160 P-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g---~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~---~---  228 (312)
T KOG0645|consen  160 P-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG---HENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD---L---  228 (312)
T ss_pred             C-CcceeEEeccCCeEEEEeecCCCCeeEEEEecC---ccceEEEEEecC-CCceEEEecCCcceEeeeeccC---c---
Confidence            9 7899999999999999987732   23455555   999999999999 9999999999999999987742   1   


Q ss_pred             eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc----cceeE-EeecCCcceeeeeecCCCCcccccccCcEEE
Q 020107          236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK----AEVLE-TYAKHGSLAYGADWQRGRSSLEGKRKNSLVA  310 (331)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~  310 (331)
                      ...|..+++.+.|. +  +.++++|.++.++++......    .+++. .-..|...|++++|.|...        ++|+
T Consensus       229 ~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~--------~~L~  297 (312)
T KOG0645|consen  229 SGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS--------NRLA  297 (312)
T ss_pred             chhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC--------Ccee
Confidence            25678899999999 4  889999999999999887531    11222 3346888999999999654        7999


Q ss_pred             EeecCCCeEEEEcCC
Q 020107          311 TCSFYDRLLRIWMPE  325 (331)
Q Consensus       311 s~~~~d~~i~iW~~~  325 (331)
                      ++| +||.|++|.+.
T Consensus       298 s~~-DDG~v~~W~l~  311 (312)
T KOG0645|consen  298 SGG-DDGIVNFWELE  311 (312)
T ss_pred             ecC-CCceEEEEEec
Confidence            999 99999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.9e-39  Score=256.92  Aligned_cols=284  Identities=19%  Similarity=0.277  Sum_probs=239.6

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc------ceEEeE------eeecCcEeEEEEc
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK------NLELLY------RMDTAGIFDIKWS   75 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~------~~~~~~------~~~~~~v~~~~~~   75 (331)
                      ++.++.+.+|.|...  .+||+|+          .+-..++|++.....      .++...      ...+..|++++|+
T Consensus       177 ~~~~V~~~~WnP~~~--~llasg~----------~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn  244 (524)
T KOG0273|consen  177 HESEVFICAWNPLRD--GLLASGS----------GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN  244 (524)
T ss_pred             CCCceEEEecCchhh--hhhhccC----------CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec
Confidence            344566667777652  3899998          799999999986211      111110      1123569999999


Q ss_pred             CCCCCCCCeEEEEcCCccE-EEecCCCc-----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccc
Q 020107           76 PVGGNAGPFLAQADADGGL-LRDITGEK-----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHE  149 (331)
Q Consensus        76 ~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  149 (331)
                      .+    |..||+|+.||.+ +|+.....     .|+++|.++.|+..|.+|++++.|+++.+||..++..  ...+.-|.
T Consensus       245 ~~----G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~--~q~f~~~s  318 (524)
T KOG0273|consen  245 ND----GTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV--KQQFEFHS  318 (524)
T ss_pred             CC----CCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE--EEeeeecc
Confidence            99    9999999999999 99987654     4899999999999999999999999999999988865  55666678


Q ss_pred             ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107          150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      .+...+.|-  +...+++++.|+.|+++.+....+...+..   |..+|.+|.|+| .+.+|++++.|++++||.+... 
T Consensus       319 ~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~G---H~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~-  391 (524)
T KOG0273|consen  319 APALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIG---HHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQS-  391 (524)
T ss_pred             CCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeec---ccCceEEEEECC-CCceEEEecCCCeeEeeecCCC-
Confidence            777889996  457899999999999999998888888887   999999999999 9999999999999999998874 


Q ss_pred             CCceeeeeecCCceEEEEECCCCC--------CeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCccc
Q 020107          230 KPVNETSVCLGGGVWRIKHHPFIP--------GLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLE  301 (331)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  301 (331)
                      ..... +..|...|+.+.|+|.++        ..+++++.++.+++|++..  +.++.+|..|+.+|++++|+|++    
T Consensus       392 ~~~~~-l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--gv~i~~f~kH~~pVysvafS~~g----  464 (524)
T KOG0273|consen  392 NSVHD-LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--GVPIHTLMKHQEPVYSVAFSPNG----  464 (524)
T ss_pred             cchhh-hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC--CceeEeeccCCCceEEEEecCCC----
Confidence            44444 589999999999999763        4578888899999999988  69999999999999999999999    


Q ss_pred             ccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          302 GKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       302 ~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                           +++|+|+ .||.|.+|+..++.+
T Consensus       465 -----~ylAsGs-~dg~V~iws~~~~~l  486 (524)
T KOG0273|consen  465 -----RYLASGS-LDGCVHIWSTKTGKL  486 (524)
T ss_pred             -----cEEEecC-CCCeeEeccccchhe
Confidence                 7999999 999999999988765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.4e-38  Score=233.75  Aligned_cols=269  Identities=13%  Similarity=0.205  Sum_probs=228.2

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc-
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI-  103 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~-  103 (331)
                      -+||+++|          |.+|++|...++. ....+ ....+.|+.+...|+    ++.||+++....-++|+.+.+. 
T Consensus        11 viLvsA~Y----------DhTIRfWqa~tG~-C~rTi-qh~dsqVNrLeiTpd----k~~LAaa~~qhvRlyD~~S~np~   74 (311)
T KOG0315|consen   11 VILVSAGY----------DHTIRFWQALTGI-CSRTI-QHPDSQVNRLEITPD----KKDLAAAGNQHVRLYDLNSNNPN   74 (311)
T ss_pred             eEEEeccC----------cceeeeeehhcCe-EEEEE-ecCccceeeEEEcCC----cchhhhccCCeeEEEEccCCCCC
Confidence            68999985          9999999999986 44444 333567999999999    8899988876655999988765 


Q ss_pred             -------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107          104 -------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG  176 (331)
Q Consensus       104 -------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (331)
                             |...|.++.|..+|+.+++|++||+++|||++...  +.+.++ |..+|+++..+| +...|++|..+|.|++
T Consensus        75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irv  150 (311)
T KOG0315|consen   75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRV  150 (311)
T ss_pred             ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--cchhcc-CCCCcceEEecC-CcceEEeecCCCcEEE
Confidence                   57889999999999999999999999999999743  344554 678999999999 7788999999999999


Q ss_pred             EEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC-----CCceeeeeecCCceEEEEECCC
Q 020107          177 WDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS-----KPVNETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       177 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~  251 (331)
                      ||+++..+...+..  .-...|.++...| ++.+++.+..-|...+|++-+..     .|+.. +..|.+-+.++.+||+
T Consensus       151 WDl~~~~c~~~liP--e~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k-~~ah~~~il~C~lSPd  226 (311)
T KOG0315|consen  151 WDLGENSCTHELIP--EDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHK-FQAHNGHILRCLLSPD  226 (311)
T ss_pred             EEccCCccccccCC--CCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhh-eecccceEEEEEECCC
Confidence            99998765544432  2467899999999 99999999999999999997632     23443 6789999999999999


Q ss_pred             CCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          252 IPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      + .++++++++..+++|+..+. .+.-..+.+|...+++++||.++         ++|+|++ .|+.+++|+++.+..
T Consensus       227 ~-k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg---------~YlvTas-sd~~~rlW~~~~~k~  292 (311)
T KOG0315|consen  227 V-KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADG---------EYLVTAS-SDHTARLWDLSAGKE  292 (311)
T ss_pred             C-cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCc---------cEEEecC-CCCceeecccccCce
Confidence            7 77888888999999999887 67777888999999999999999         7999999 999999999998864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.9e-38  Score=241.59  Aligned_cols=280  Identities=19%  Similarity=0.270  Sum_probs=244.9

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +.++-..|.+.-+.|...++++++          +|++|++||..+++  +...+++|...|.+++|+..    +++|++
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as----------~d~tikv~D~~tg~--~e~~LrGHt~sv~di~~~a~----Gk~l~t  167 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSAS----------EDATIKVFDTETGE--LERSLRGHTDSVFDISFDAS----GKYLAT  167 (406)
T ss_pred             hhccccceeeeeeccCceEEEEec----------CCceEEEEEccchh--hhhhhhccccceeEEEEecC----ccEEEe
Confidence            445555555555555446888887          89999999999987  56677999999999999999    999999


Q ss_pred             EcCCccE-EEecCCC-------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107           88 ADADGGL-LRDITGE-------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (331)
                      ++.|-.+ +|+..+.       ..|...|.++.|-|.|.++++++.|.+|+.|++.++  .++.++.+|...|..++.+.
T Consensus       168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg--~cv~t~~~h~ewvr~v~v~~  245 (406)
T KOG0295|consen  168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG--YCVKTFPGHSEWVRMVRVNQ  245 (406)
T ss_pred             cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc--eeEEeccCchHhEEEEEecC
Confidence            9999988 9998762       236788999999999999999999999999999998  45899999999999999995


Q ss_pred             CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC---------C-----CCEEEEEecCCeEEEEEe
Q 020107          160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS---------D-----SNTLLTGSYDEYLRVWDV  225 (331)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~-----~~~l~~~~~d~~i~iwd~  225 (331)
                       ++.++++++.|.+|++|-+.++++...+..   |+.+|-+++|.|.         .     +.++.+++.|++|++||+
T Consensus       246 -DGti~As~s~dqtl~vW~~~t~~~k~~lR~---hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv  321 (406)
T KOG0295|consen  246 -DGTIIASCSNDQTLRVWVVATKQCKAELRE---HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV  321 (406)
T ss_pred             -CeeEEEecCCCceEEEEEeccchhhhhhhc---cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence             999999999999999999999998888888   9999999999874         1     258999999999999999


Q ss_pred             cCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCccccccc
Q 020107          226 RSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRK  305 (331)
Q Consensus       226 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  305 (331)
                      .++ .++.+ +.+|...|..++|+|.| .++++...|+.+++|++.+  .++..++..|+.-|++++|..+.+       
T Consensus       322 ~tg-~cL~t-L~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~--~~cmk~~~ah~hfvt~lDfh~~~p-------  389 (406)
T KOG0295|consen  322 STG-MCLFT-LVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKN--LQCMKTLEAHEHFVTSLDFHKTAP-------  389 (406)
T ss_pred             cCC-eEEEE-EecccceeeeeEEcCCC-eEEEEEecCCcEEEEEecc--ceeeeccCCCcceeEEEecCCCCc-------
Confidence            997 45554 58999999999999996 6667777778899999988  588899999999999999999984       


Q ss_pred             CcEEEEeecCCCeEEEEcC
Q 020107          306 NSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       306 ~~~l~s~~~~d~~i~iW~~  324 (331)
                        +++||+ -|.++++|.-
T Consensus       390 --~VvTGs-Vdqt~KvwEc  405 (406)
T KOG0295|consen  390 --YVVTGS-VDQTVKVWEC  405 (406)
T ss_pred             --eEEecc-ccceeeeeec
Confidence              999999 9999999963

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.8e-38  Score=266.07  Aligned_cols=261  Identities=16%  Similarity=0.241  Sum_probs=226.4

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc-----------------------------cceEE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE-----------------------------KNLEL   60 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~-----------------------------~~~~~   60 (331)
                      ..+.|..|++++   .+||+|.          .|..|++|.+...+                             .....
T Consensus       379 ~~v~ca~fSdds---smlA~Gf----------~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~  445 (707)
T KOG0263|consen  379 QGVTCAEFSDDS---SMLACGF----------VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR  445 (707)
T ss_pred             CcceeEeecCCc---chhhccc----------cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence            356677777776   7999997          79999999987421                             01233


Q ss_pred             eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEE
Q 020107           61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVS  133 (331)
Q Consensus        61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  133 (331)
                      .+.+|.++|....|+|+    .++|+++++|+++ +|.+.+..+      |..+|..+.|+|.|-++|+++.|++.++|.
T Consensus       446 ~L~GH~GPVyg~sFsPd----~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs  521 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPD----RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS  521 (707)
T ss_pred             EeecCCCceeeeeeccc----ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence            46789999999999999    8999999999999 999988654      889999999999999999999999999999


Q ss_pred             ccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107          134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT  213 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  213 (331)
                      ....  .+++.+.+|-..|.|+.|+| +.+++++|+.|.+||+||+.++..+..|..   |.++|.+++|+| +|.+|++
T Consensus       522 ~d~~--~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---H~~~V~al~~Sp-~Gr~LaS  594 (707)
T KOG0263|consen  522 TDHN--KPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTG---HKGPVTALAFSP-CGRYLAS  594 (707)
T ss_pred             cccC--CchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecC---CCCceEEEEEcC-CCceEee
Confidence            9875  55889999999999999999 889999999999999999999999999987   999999999999 9999999


Q ss_pred             EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc-----------------
Q 020107          214 GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE-----------------  276 (331)
Q Consensus       214 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  276 (331)
                      |+.|+.|++||+.++ .++.+ +.+|.+.|.++.|+.++ ..+++++.++.+++|++......                 
T Consensus       595 g~ed~~I~iWDl~~~-~~v~~-l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~  671 (707)
T KOG0263|consen  595 GDEDGLIKIWDLANG-SLVKQ-LKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQEN  671 (707)
T ss_pred             cccCCcEEEEEcCCC-cchhh-hhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhcccccccccccccccccccC
Confidence            999999999999996 44444 58999999999999998 88889999999999998764322                 


Q ss_pred             -----eeEEeecCCcceeeeeecCCC
Q 020107          277 -----VLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       277 -----~~~~~~~h~~~v~~~~~~~~~  297 (331)
                           .+.++.....+|..+.|...+
T Consensus       672 ~~~~~llgs~~tK~tpv~~l~FtrrN  697 (707)
T KOG0263|consen  672 NASSLLLGSFYTKNTPVVGLHFTRRN  697 (707)
T ss_pred             CCCcceeeeeeecCceEEEEEEeccc
Confidence                 455666666688888888775

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=8.9e-38  Score=247.55  Aligned_cols=271  Identities=19%  Similarity=0.332  Sum_probs=219.2

Q ss_pred             eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107            5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   84 (331)
                      ++..++.+..+++.|..|  .++|+++          ..+.|+|||..........         .. .+.|+      +
T Consensus       120 ~i~h~gEVnRaRymPQnp--~iVAt~t----------~~~dv~Vfd~tk~~s~~~~---------~~-~~~Pd------l  171 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNP--NIVATKT----------SSGDVYVFDYTKHPSKPKA---------SG-ECRPD------L  171 (422)
T ss_pred             eccCCccchhhhhCCCCC--cEEEecC----------CCCCEEEEEeccCCCcccc---------cc-cCCCc------e
Confidence            456789999999999998  8999988          7999999998765411111         00 34444      3


Q ss_pred             EEEEcCCccEEEecCCCcccCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccc-----eeeeeeeecccceeEEEeeC
Q 020107           85 LAQADADGGLLRDITGEKISSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQ-----LEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus        85 l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~v~~~~~~  158 (331)
                      .+.|..+               .-++++|++... .|++++.|+.|++||+....     ..+...+.+|...|..++|+
T Consensus       172 ~L~gH~~---------------eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h  236 (422)
T KOG0264|consen  172 RLKGHEK---------------EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWH  236 (422)
T ss_pred             EEEeecc---------------cccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhcc
Confidence            3333321               234566666443 48888888999999987632     34566788999999999999


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC  238 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  238 (331)
                      |.+..+|++++.|+.+.|||+|++....... .++|.+.|.|++|+|.++.+||||+.|++|.+||+|+..+++.. +..
T Consensus       237 ~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~-~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~-~e~  314 (422)
T KOG0264|consen  237 PLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS-VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT-FEG  314 (422)
T ss_pred             ccchhhheeecCCCeEEEEEcCCCCCCCccc-ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee-ccC
Confidence            9999999999999999999999642222222 25599999999999999999999999999999999999888877 789


Q ss_pred             cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc------------cceeEEeecCCcceeeeeecCCCCcccccccC
Q 020107          239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK------------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKN  306 (331)
Q Consensus       239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  306 (331)
                      |...|.++.|+|+....++++|.|+.+.+|++....            .++++...||+..|..+.|+|+.+        
T Consensus       315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP--------  386 (422)
T KOG0264|consen  315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP--------  386 (422)
T ss_pred             CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC--------
Confidence            999999999999998899999999999999997632            456788889999999999999998        


Q ss_pred             cEEEEeecCCCeEEEEcCCCccc
Q 020107          307 SLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       307 ~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ..|+|++ +|+.+.||++...+.
T Consensus       387 W~I~Sva-eDN~LqIW~~s~~i~  408 (422)
T KOG0264|consen  387 WTIASVA-EDNILQIWQMAENIY  408 (422)
T ss_pred             eEEEEec-CCceEEEeecccccc
Confidence            8999999 999999999986543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.3e-38  Score=264.93  Aligned_cols=235  Identities=20%  Similarity=0.275  Sum_probs=210.7

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------------------------------------cCccE
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------------------------------------SSSMC  108 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------------------------------------~~~~v  108 (331)
                      ..++|..|+++    ..+||.|-.|..+ +|.+...+.                                     |.++|
T Consensus       379 ~~v~ca~fSdd----ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  379 QGVTCAEFSDD----SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             CcceeEeecCC----cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence            46999999999    8899999999999 998873210                                     68899


Q ss_pred             EEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeee
Q 020107          109 LCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAF  188 (331)
Q Consensus       109 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  188 (331)
                      ...+|+|+.++|+++++|+++|+|.+.+..  ++..+++|..+|+.+.|+| .+.+|++++.|++.++|.........++
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s--~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWS--CLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccce--eEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence            999999999999999999999999999874  4778899999999999999 7899999999999999999988877778


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVV  268 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  268 (331)
                      ..   |.+.|.|+.|+| +.+++++|+.|.+||+||..++.. +. ++.+|.++|.+++|+|+| ..+++++.++.|.+|
T Consensus       532 ag---hlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~-VR-iF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iW  604 (707)
T KOG0263|consen  532 AG---HLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS-VR-IFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIW  604 (707)
T ss_pred             cc---cccccceEEECC-cccccccCCCCceEEEEEcCCCcE-EE-EecCCCCceEEEEEcCCC-ceEeecccCCcEEEE
Confidence            77   999999999999 999999999999999999999643 33 368999999999999996 666666677788889


Q ss_pred             EEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          269 KVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       269 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ++..  ++.+..+.+|++.|+++.|+.++         ..||++| .|.+|++||+..-
T Consensus       605 Dl~~--~~~v~~l~~Ht~ti~SlsFS~dg---------~vLasgg-~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  605 DLAN--GSLVKQLKGHTGTIYSLSFSRDG---------NVLASGG-ADNSVRLWDLTKV  651 (707)
T ss_pred             EcCC--CcchhhhhcccCceeEEEEecCC---------CEEEecC-CCCeEEEEEchhh
Confidence            9887  68899999999999999999999         7999999 9999999998653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.7e-36  Score=227.61  Aligned_cols=246  Identities=20%  Similarity=0.263  Sum_probs=212.0

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      .+.++++|...|.++.|+++    .+.|++++.||.+ +||..+...      ...-|..++|+|.++++|+|+-|+...
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~D----sr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTD----SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS  122 (343)
T ss_pred             eEEEecccccceeeeEecCC----cCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence            44677999999999999999    9999999999999 999876543      367789999999999999999999999


Q ss_pred             EEEcccc----ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107          131 IVSVVES----QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS  206 (331)
Q Consensus       131 i~d~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  206 (331)
                      ||++.+.    .....+.+.+|.+.+.++.|-+  ...|++++.|.++.+||+++++....|..   |.+.|.+++++|.
T Consensus       123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~G---H~gDV~slsl~p~  197 (343)
T KOG0286|consen  123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHG---HTGDVMSLSLSPS  197 (343)
T ss_pred             EEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecC---CcccEEEEecCCC
Confidence            9999853    2234567889999999999985  47799999999999999999998888887   9999999999998


Q ss_pred             CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee--cC
Q 020107          207 DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA--KH  284 (331)
Q Consensus       207 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h  284 (331)
                      +++.+++|+-|+..++||+|.+ ..... +.+|.+.|++++|.|++ .-+++++.|...++|+++..  +.+..+.  .-
T Consensus       198 ~~ntFvSg~cD~~aklWD~R~~-~c~qt-F~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD--~~~a~ys~~~~  272 (343)
T KOG0286|consen  198 DGNTFVSGGCDKSAKLWDVRSG-QCVQT-FEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRAD--QELAVYSHDSI  272 (343)
T ss_pred             CCCeEEecccccceeeeeccCc-ceeEe-ecccccccceEEEccCC-CeeeecCCCceeEEEeecCC--cEEeeeccCcc
Confidence            8999999999999999999996 44544 68999999999999996 55666666677899999986  4444444  44


Q ss_pred             CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ..+|++++||..|         ++|.+|. .|.++.+||.-.+
T Consensus       273 ~~gitSv~FS~SG---------RlLfagy-~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  273 ICGITSVAFSKSG---------RLLFAGY-DDFTCNVWDTLKG  305 (343)
T ss_pred             cCCceeEEEcccc---------cEEEeee-cCCceeEeecccc
Confidence            5689999999999         8999998 9999999997544

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=226.40  Aligned_cols=248  Identities=15%  Similarity=0.229  Sum_probs=206.8

Q ss_pred             ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEEcCCCCeEEEEe
Q 020107           57 NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEWNPSATSITVGL  124 (331)
Q Consensus        57 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~  124 (331)
                      .+...+++|++.|+.++..+.+   .+.+++++.|.++ +|++...+.           |...|..+..+++|++.++++
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~---~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKN---SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCC---CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence            3566779999999999999986   5699999999999 999876432           678899999999999999999


Q ss_pred             cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe
Q 020107          125 SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI  204 (331)
Q Consensus       125 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  204 (331)
                      .|+++++||+.++  ++.+.|.+|...|.+++|+| +...+++|+.|.+|++|+..... ...+.. ..+...|.|+.|+
T Consensus        83 wD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~c-k~t~~~-~~~~~WVscvrfs  157 (315)
T KOG0279|consen   83 WDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVC-KYTIHE-DSHREWVSCVRFS  157 (315)
T ss_pred             ccceEEEEEecCC--cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccE-EEEEec-CCCcCcEEEEEEc
Confidence            9999999999998  45888999999999999999 77999999999999999998543 444544 2247899999999


Q ss_pred             cCC-CCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec
Q 020107          205 PSD-SNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK  283 (331)
Q Consensus       205 ~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (331)
                      |.. ..+|++++.|++|++||+++.  .+...+.+|.+.++.++++||| .+.+.++.++.+.+|++..  ++.+.++ +
T Consensus       158 P~~~~p~Ivs~s~DktvKvWnl~~~--~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~--~k~lysl-~  231 (315)
T KOG0279|consen  158 PNESNPIIVSASWDKTVKVWNLRNC--QLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNE--GKNLYSL-E  231 (315)
T ss_pred             CCCCCcEEEEccCCceEEEEccCCc--chhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccC--CceeEec-c
Confidence            932 689999999999999999985  3333368999999999999996 6666666777788999988  4556655 4


Q ss_pred             CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      |...|.+++|+|+.          +.+... .+..|+|||++++..
T Consensus       232 a~~~v~sl~fspnr----------ywL~~a-t~~sIkIwdl~~~~~  266 (315)
T KOG0279|consen  232 AFDIVNSLCFSPNR----------YWLCAA-TATSIKIWDLESKAV  266 (315)
T ss_pred             CCCeEeeEEecCCc----------eeEeec-cCCceEEEeccchhh
Confidence            78899999999996          444444 578899999988743

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.4e-38  Score=240.84  Aligned_cols=244  Identities=15%  Similarity=0.219  Sum_probs=219.9

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      +..+..+|.+.|.++++.|.    .++|++|+.|+++ |||+.+++.      |...|..+++++...++++++.|+.|+
T Consensus       143 l~rVi~gHlgWVr~vavdP~----n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPG----NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             ehhhhhhccceEEEEeeCCC----ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            33456889999999999999    8899999999999 999999876      678899999999999999999999999


Q ss_pred             EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107          131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                      -||++.++.  ++.+.+|-..|.+++.+| .-..|++|+.|.++++||+|+...+..+..   |..+|.++.+.| ....
T Consensus       219 CwDLe~nkv--IR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~G---H~~~V~~V~~~~-~dpq  291 (460)
T KOG0285|consen  219 CWDLEYNKV--IRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSG---HTNPVASVMCQP-TDPQ  291 (460)
T ss_pred             EEechhhhh--HHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecC---CCCcceeEEeec-CCCc
Confidence            999998865  899999999999999999 779999999999999999999988877777   999999999999 6668


Q ss_pred             EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceee
Q 020107          211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG  290 (331)
Q Consensus       211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  290 (331)
                      +++|+.|++|++||++.++....  +..|...|.+++.+|.  ..++++++.+.++.|++..  +..+..+.+|+..|..
T Consensus       292 vit~S~D~tvrlWDl~agkt~~t--lt~hkksvral~lhP~--e~~fASas~dnik~w~~p~--g~f~~nlsgh~~iint  365 (460)
T KOG0285|consen  292 VITGSHDSTVRLWDLRAGKTMIT--LTHHKKSVRALCLHPK--ENLFASASPDNIKQWKLPE--GEFLQNLSGHNAIINT  365 (460)
T ss_pred             eEEecCCceEEEeeeccCceeEe--eecccceeeEEecCCc--hhhhhccCCccceeccCCc--cchhhccccccceeee
Confidence            99999999999999999754333  4889999999999999  6677777888889999887  6788889999999999


Q ss_pred             eeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ++...|+          ++++|+ +.|.+.+||..++..
T Consensus       366 l~~nsD~----------v~~~G~-dng~~~fwdwksg~n  393 (460)
T KOG0285|consen  366 LSVNSDG----------VLVSGG-DNGSIMFWDWKSGHN  393 (460)
T ss_pred             eeeccCc----------eEEEcC-CceEEEEEecCcCcc
Confidence            9999996          899999 999999999988743

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.1e-36  Score=239.75  Aligned_cols=273  Identities=17%  Similarity=0.334  Sum_probs=230.1

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+++++|+..+   .+||+|+          .+|.+++|+....   +...+..|.++|.++.|+..    +.+|++++
T Consensus       236 kdVT~L~Wn~~G---~~LatG~----------~~G~~riw~~~G~---l~~tl~~HkgPI~slKWnk~----G~yilS~~  295 (524)
T KOG0273|consen  236 KDVTSLDWNNDG---TLLATGS----------EDGEARIWNKDGN---LISTLGQHKGPIFSLKWNKK----GTYILSGG  295 (524)
T ss_pred             CCcceEEecCCC---CeEEEee----------cCcEEEEEecCch---hhhhhhccCCceEEEEEcCC----CCEEEecc
Confidence            456778887766   8999999          6999999999886   33445789999999999999    99999999


Q ss_pred             CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      .|+++ +||..++..      |..+...+.|-.+ ..+++.+.|+.|+++.+...  .|+.++.+|.++|.++.|+| .+
T Consensus       296 vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~--~P~~t~~GH~g~V~alk~n~-tg  371 (524)
T KOG0273|consen  296 VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED--RPVKTFIGHHGEVNALKWNP-TG  371 (524)
T ss_pred             CCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCC--CcceeeecccCceEEEEECC-CC
Confidence            99999 999977643      5555577888643 56899999999999999876  45889999999999999999 88


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC--------CCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS--------DSNTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      .+|++++.|++++||......+...+..   |...|+.+.|+|.        .+..+++++.|++|++||+..+ .++..
T Consensus       372 ~LLaS~SdD~TlkiWs~~~~~~~~~l~~---Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~  447 (524)
T KOG0273|consen  372 SLLASCSDDGTLKIWSMGQSNSVHDLQA---HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHT  447 (524)
T ss_pred             ceEEEecCCCeeEeeecCCCcchhhhhh---hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEe
Confidence            9999999999999999988877777777   9999999999984        2457999999999999999996 66766


Q ss_pred             eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107          235 TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       235 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  314 (331)
                       +..|..+|++++|+|++ .++++++.++.+.+|.+..  +++++.+.+ .+.|..+.|+.++         ..|..+- 
T Consensus       448 -f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~--~~l~~s~~~-~~~Ifel~Wn~~G---------~kl~~~~-  512 (524)
T KOG0273|consen  448 -LMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKT--GKLVKSYQG-TGGIFELCWNAAG---------DKLGACA-  512 (524)
T ss_pred             -eccCCCceEEEEecCCC-cEEEecCCCCeeEeccccc--hheeEeecC-CCeEEEEEEcCCC---------CEEEEEe-
Confidence             57999999999999996 5666666677777777665  678888876 5679999999999         5666666 


Q ss_pred             CCCeEEEEcCC
Q 020107          315 YDRLLRIWMPE  325 (331)
Q Consensus       315 ~d~~i~iW~~~  325 (331)
                      .|+.+++-|+.
T Consensus       513 sd~~vcvldlr  523 (524)
T KOG0273|consen  513 SDGSVCVLDLR  523 (524)
T ss_pred             cCCCceEEEec
Confidence            69999998763

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.4e-36  Score=232.02  Aligned_cols=281  Identities=15%  Similarity=0.228  Sum_probs=234.3

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +.+|..-|++....|..++|++|+          .|++|+|||+.+++  ++....+|...|..+++|+.    ..+|++
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs----------~DrtikIwDlatg~--LkltltGhi~~vr~vavS~r----HpYlFs  210 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGS----------ADRTIKIWDLATGQ--LKLTLTGHIETVRGVAVSKR----HPYLFS  210 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecC----------CCceeEEEEcccCe--EEEeecchhheeeeeeeccc----CceEEE
Confidence            445554455555555559999999          89999999999996  88888999999999999999    779999


Q ss_pred             EcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      ++.|+.+ .||+...+.      |-+.|+|++.+|.-..|++|+.|.++++||+++..  .+..+.+|..+|..+.+.| 
T Consensus       211 ~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~-  287 (460)
T KOG0285|consen  211 AGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQP-  287 (460)
T ss_pred             ecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeec-
Confidence            9999999 999998765      67899999999999999999999999999999874  4888999999999999998 


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      -...+++|+.|++|++||++.++....+..   |...|++++.+| ....||+++.|. |+-|++..+.....  +.+|.
T Consensus       288 ~dpqvit~S~D~tvrlWDl~agkt~~tlt~---hkksvral~lhP-~e~~fASas~dn-ik~w~~p~g~f~~n--lsgh~  360 (460)
T KOG0285|consen  288 TDPQVITGSHDSTVRLWDLRAGKTMITLTH---HKKSVRALCLHP-KENLFASASPDN-IKQWKLPEGEFLQN--LSGHN  360 (460)
T ss_pred             CCCceEEecCCceEEEeeeccCceeEeeec---ccceeeEEecCC-chhhhhccCCcc-ceeccCCccchhhc--ccccc
Confidence            446789999999999999999988777777   999999999999 999999999876 99999988643333  58999


Q ss_pred             CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-cceeEEee-----cCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107          241 GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-AEVLETYA-----KHGSLAYGADWQRGRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  314 (331)
                      +-|.+++.+.|  +.+++++..+.+..|+..... .+..++..     ..+..|++.+|...+         ..|+||. 
T Consensus       361 ~iintl~~nsD--~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg---------~rlit~e-  428 (460)
T KOG0285|consen  361 AIINTLSVNSD--GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG---------SRLITGE-  428 (460)
T ss_pred             ceeeeeeeccC--ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC---------ceEEecc-
Confidence            99999999988  777777777776677765521 12222221     134578889999888         6999999 


Q ss_pred             CCCeEEEEcCCC
Q 020107          315 YDRLLRIWMPES  326 (331)
Q Consensus       315 ~d~~i~iW~~~~  326 (331)
                      .|.+|++|.-++
T Consensus       429 adKtIk~~keDe  440 (460)
T KOG0285|consen  429 ADKTIKMYKEDE  440 (460)
T ss_pred             CCcceEEEeccc
Confidence            999999998654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.9e-35  Score=238.08  Aligned_cols=275  Identities=21%  Similarity=0.335  Sum_probs=230.7

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +..++.++.|+|.+   ++|++++          .+|.|++|++.+..  .......|...+..+.|+|+    ++.|++
T Consensus         8 h~~~i~~~~~~~~~---~~l~~~~----------~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~----~~~l~~   68 (289)
T cd00200           8 HTGGVTCVAFSPDG---KLLATGS----------GDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASAD----GTYLAS   68 (289)
T ss_pred             cCCCEEEEEEcCCC---CEEEEee----------cCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCC----CCEEEE
Confidence            45677888888875   7999998          79999999998775  34445678888999999999    889999


Q ss_pred             EcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      ++.+|.+ +|++...+.      +...+.++.|+++++++++++.+|.|.+||+.+++.  ...+..|...+.+++|+| 
T Consensus        69 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~-  145 (289)
T cd00200          69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC--LTTLRGHTDWVNSVAFSP-  145 (289)
T ss_pred             EcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE--EEEeccCCCcEEEEEEcC-
Confidence            9999999 999987432      456899999999988888888899999999986643  666778888999999998 


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      ++.++++++.++.|++||+++++....+..   |...+.++.|+| ++..+++++.|+.|++||++.. +++.. ...|.
T Consensus       146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~-~~~~~-~~~~~  219 (289)
T cd00200         146 DGTFVASSSQDGTIKLWDLRTGKCVATLTG---HTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTG-KCLGT-LRGHE  219 (289)
T ss_pred             cCCEEEEEcCCCcEEEEEccccccceeEec---CccccceEEECC-CcCEEEEecCCCcEEEEECCCC-ceecc-hhhcC
Confidence            678888888899999999998877777765   888999999999 8888999999999999999874 44443 34788


Q ss_pred             CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107          241 GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR  320 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~  320 (331)
                      ..+.+++|+|++ .++++++.++.+.+|++..  ++....+..|...+.+++|+|++         .+|++++ .|+.|+
T Consensus       220 ~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~--~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~-~d~~i~  286 (289)
T cd00200         220 NGVNSVAFSPDG-YLLASGSEDGTIRVWDLRT--GECVQTLSGHTNSVTSLAWSPDG---------KRLASGS-ADGTIR  286 (289)
T ss_pred             CceEEEEEcCCC-cEEEEEcCCCcEEEEEcCC--ceeEEEccccCCcEEEEEECCCC---------CEEEEec-CCCeEE
Confidence            899999999983 4444444488999999876  46777788899999999999998         6999999 999999


Q ss_pred             EEc
Q 020107          321 IWM  323 (331)
Q Consensus       321 iW~  323 (331)
                      +|+
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-36  Score=235.15  Aligned_cols=284  Identities=15%  Similarity=0.213  Sum_probs=233.4

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-ceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-NLELLYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      +..|...|-|+.++++|.|||+++          +|.+..+|.+..... .+.....+|..+|..+.|||+    .++|+
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaS----------kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD----dryLl  285 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASAS----------KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD----DRYLL  285 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeecc----------CCceEEEEEEecCcceeeeeeeecccCceEEEEECCC----CCeEE
Confidence            456788888888888889999999          899999999865542 356667899999999999999    89999


Q ss_pred             EEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec-ccceeEEEee
Q 020107           87 QADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA-HEFELWATSF  157 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~  157 (331)
                      +++.+..+ +||+.++..       +...+.+++|.|||..+++|+.|+++..||++.+.   ...+++ ....|.+++.
T Consensus       286 aCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~---~~~W~gvr~~~v~dlai  362 (519)
T KOG0293|consen  286 ACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI---LGNWEGVRDPKVHDLAI  362 (519)
T ss_pred             ecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch---hhcccccccceeEEEEE
Confidence            99999888 999998765       34678899999999999999999999999998643   233332 2356999999


Q ss_pred             CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee
Q 020107          158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV  237 (331)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  237 (331)
                      .+ ++..+++.+.|..|++++..+......+..    ..+|++++.+. +++++++.-.+..+++||+.....+..  ..
T Consensus       363 t~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise----~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~k--Y~  434 (519)
T KOG0293|consen  363 TY-DGKYVLLVTVDKKIRLYNREARVDRGLISE----EQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRK--YF  434 (519)
T ss_pred             cC-CCcEEEEEecccceeeechhhhhhhccccc----cCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHH--hh
Confidence            98 888888889999999999988765555554    67899999999 999999999999999999996433222  36


Q ss_pred             ecCCc--eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107          238 CLGGG--VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY  315 (331)
Q Consensus       238 ~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~  315 (331)
                      +|...  +-.-+|-...+.++++++.|+.+++|+...  ++++.++.||...|.+++|+|..+        .++||+| +
T Consensus       435 Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s--gkll~~LsGHs~~vNcVswNP~~p--------~m~ASas-D  503 (519)
T KOG0293|consen  435 GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS--GKLLAVLSGHSKTVNCVSWNPADP--------EMFASAS-D  503 (519)
T ss_pred             cccccceEEEeccCCCCcceEEecCCCceEEEEEccC--CceeEeecCCcceeeEEecCCCCH--------HHhhccC-C
Confidence            66554  444556555435565666677888888766  799999999999999999999998        8999999 9


Q ss_pred             CCeEEEEcCCCc
Q 020107          316 DRLLRIWMPESD  327 (331)
Q Consensus       316 d~~i~iW~~~~~  327 (331)
                      ||+||||.+...
T Consensus       504 DgtIRIWg~~~~  515 (519)
T KOG0293|consen  504 DGTIRIWGPSDN  515 (519)
T ss_pred             CCeEEEecCCcc
Confidence            999999998754

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.9e-37  Score=242.53  Aligned_cols=234  Identities=20%  Similarity=0.271  Sum_probs=210.5

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ  138 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  138 (331)
                      ..+|..+.|.|+    |+.|++|+..|.. +|+.....      .|.++|.++.|++++.++++|+.+|.|++|+..-..
T Consensus        96 kc~V~~v~WtPe----GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   96 KCPVNVVRWTPE----GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             ccceeeEEEcCC----CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence            346999999999    9999999999999 99987643      489999999999999999999999999999987643


Q ss_pred             eeeeeeeeccc-ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107          139 LEVLQQWKAHE-FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD  217 (331)
Q Consensus       139 ~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  217 (331)
                         ++.++.|. ..|++++|+| +...|+++++||+|+|||.+..+...++..   |.-.|.+++|+| ...++++++.|
T Consensus       172 ---Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~G---HgwdVksvdWHP-~kgLiasgskD  243 (464)
T KOG0284|consen  172 ---VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRG---HGWDVKSVDWHP-TKGLIASGSKD  243 (464)
T ss_pred             ---hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheecc---CCCCcceeccCC-ccceeEEccCC
Confidence               45555554 8999999999 678899999999999999999887777776   999999999999 88899999999


Q ss_pred             CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107          218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                      ..|++||.+++ .++.. +..|...|..+.|+|++ ..|++++.|..+++++++.  .+.++++++|+..|+++.|+|-.
T Consensus       244 nlVKlWDprSg-~cl~t-lh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~--mkEl~~~r~Hkkdv~~~~WhP~~  318 (464)
T KOG0284|consen  244 NLVKLWDPRSG-SCLAT-LHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRT--MKELFTYRGHKKDVTSLTWHPLN  318 (464)
T ss_pred             ceeEeecCCCc-chhhh-hhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhH--hHHHHHhhcchhhheeecccccc
Confidence            99999999997 44444 48999999999999998 8899999999999999995  58889999999999999999998


Q ss_pred             CcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          298 SSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       298 ~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      +        .+|++|| .||.|..|.+.
T Consensus       319 ~--------~lftsgg-~Dgsvvh~~v~  337 (464)
T KOG0284|consen  319 E--------SLFTSGG-SDGSVVHWVVG  337 (464)
T ss_pred             c--------cceeecc-CCCceEEEecc
Confidence            7        8999999 99999999986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1e-34  Score=234.17  Aligned_cols=285  Identities=18%  Similarity=0.257  Sum_probs=225.2

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD   91 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   91 (331)
                      +.++.|-|..|  -++++|+          +|+.|.+|+=...+  ++...+.|..-|++++|+|+    +.++++++.|
T Consensus       150 ins~~~KpsRP--fRi~T~s----------dDn~v~ffeGPPFK--Fk~s~r~HskFV~~VRysPD----G~~Fat~gsD  211 (603)
T KOG0318|consen  150 INSVDFKPSRP--FRIATGS----------DDNTVAFFEGPPFK--FKSSFREHSKFVNCVRYSPD----GSRFATAGSD  211 (603)
T ss_pred             EeeeeccCCCc--eEEEecc----------CCCeEEEeeCCCee--eeecccccccceeeEEECCC----CCeEEEecCC
Confidence            44555555555  6899998          89999999866653  67777889999999999999    9999999999


Q ss_pred             ccE-EEecCC---------CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce----------------------
Q 020107           92 GGL-LRDITG---------EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL----------------------  139 (331)
Q Consensus        92 g~i-iw~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------------------  139 (331)
                      |++ ++|-.+         ...|++.|.+++|+||+..+++++.|.+++|||+.+.++                      
T Consensus       212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd  291 (603)
T KOG0318|consen  212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD  291 (603)
T ss_pred             ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence            999 665444         445899999999999999999999999999999986421                      


Q ss_pred             -------------------eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeee-----------e
Q 020107          140 -------------------EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAF-----------Q  189 (331)
Q Consensus       140 -------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~  189 (331)
                                         .+++.+.+|...|+++..+| ++.+|++|+.||.|.-||+.++..-+..           .
T Consensus       292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~  370 (603)
T KOG0318|consen  292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA  370 (603)
T ss_pred             eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence                               12333567999999999999 7799999999999999999765432110           0


Q ss_pred             -----------------------------------------------------------ccc--------CCCcceEEEE
Q 020107          190 -----------------------------------------------------------NSK--------IHKMGVCCIA  202 (331)
Q Consensus       190 -----------------------------------------------------------~~~--------~~~~~v~~~~  202 (331)
                                                                                 ..+        .-.....+++
T Consensus       371 ~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA  450 (603)
T KOG0318|consen  371 ASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA  450 (603)
T ss_pred             ecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE
Confidence                                                                       000        0012245778


Q ss_pred             EecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107          203 SIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA  282 (331)
Q Consensus       203 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (331)
                      ++| ++..+++|+.|+.|++|.+......-......|.++|+.++++|++ .+|+++-..+.+.+|++..... ....+.
T Consensus       451 v~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~-~~~~w~  527 (603)
T KOG0318|consen  451 VSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREV-KTNRWA  527 (603)
T ss_pred             EcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCce-ecceee
Confidence            889 9999999999999999999875433332457999999999999996 5666665677788888877522 444455


Q ss_pred             cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          283 KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       283 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      -|+..|.+++|+|+.         .++|||+ .|-.|.||+++...
T Consensus       528 FHtakI~~~aWsP~n---------~~vATGS-lDt~Viiysv~kP~  563 (603)
T KOG0318|consen  528 FHTAKINCVAWSPNN---------KLVATGS-LDTNVIIYSVKKPA  563 (603)
T ss_pred             eeeeeEEEEEeCCCc---------eEEEecc-ccceEEEEEccChh
Confidence            699999999999999         7999999 99999999998653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.3e-35  Score=228.03  Aligned_cols=269  Identities=20%  Similarity=0.258  Sum_probs=232.1

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-  102 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-  102 (331)
                      ..+.+|+|          ||.+++|+....   ......+|.++|.+++|.-.++. ...|++++.|.++ +|.++.+. 
T Consensus       116 ~~IltgsY----------Dg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~-~~~fvsas~Dqtl~Lw~~~~~~~  181 (423)
T KOG0313|consen  116 KWILTGSY----------DGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSS-SCLFVSASMDQTLRLWKWNVGEN  181 (423)
T ss_pred             ceEEEeec----------CCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCc-cceEEEecCCceEEEEEecCchh
Confidence            78999996          999999999886   44555899999999998766443 4579999999999 88776543 


Q ss_pred             ---------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-----------------------cceeeeeeeecccc
Q 020107          103 ---------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-----------------------SQLEVLQQWKAHEF  150 (331)
Q Consensus       103 ---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----------------------~~~~~~~~~~~~~~  150 (331)
                               .|...|-+++..+++..+++|+.|.+|.+|+...                       +...++..+.+|..
T Consensus       182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~  261 (423)
T KOG0313|consen  182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE  261 (423)
T ss_pred             hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence                     3789999999999999999999999999999321                       12345677889999


Q ss_pred             eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC
Q 020107          151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK  230 (331)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  230 (331)
                      +|.++.|++  ...+++++.|.+|+.||+.++.....+..    ...+.++.++| ..++|++|+.|..|++||.|++..
T Consensus       262 ~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~----~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  262 PVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTT----NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             ceeeEEEcC--CCceEeecccceEEEEEeecccceeeeec----CcceeEeeccc-ccceeeecCCCCceeecCCCCCCC
Confidence            999999986  57899999999999999999998777775    77899999999 999999999999999999998643


Q ss_pred             -CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEE
Q 020107          231 -PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLV  309 (331)
Q Consensus       231 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  309 (331)
                       .+...+.+|...|.++.|+|....++++++.|+.+++|+++.. ..++..+.+|...|.+++|....          +|
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~-k~plydI~~h~DKvl~vdW~~~~----------~I  403 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST-KAPLYDIAGHNDKVLSVDWNEGG----------LI  403 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC-CCcceeeccCCceEEEEeccCCc----------eE
Confidence             3444578999999999999999888888899999999999986 45888999999999999999885          89


Q ss_pred             EEeecCCCeEEEEcCCC
Q 020107          310 ATCSFYDRLLRIWMPES  326 (331)
Q Consensus       310 ~s~~~~d~~i~iW~~~~  326 (331)
                      +||| .|.+|+|+.-..
T Consensus       404 vSGG-aD~~l~i~~~~~  419 (423)
T KOG0313|consen  404 VSGG-ADNKLRIFKGSP  419 (423)
T ss_pred             Eecc-CcceEEEecccc
Confidence            9999 999999997543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.8e-35  Score=226.59  Aligned_cols=279  Identities=18%  Similarity=0.199  Sum_probs=233.0

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +...+.+|+.+|..   +++|+|+          .|....||++.+++  ......+|...|+++.|+.+    +.+||+
T Consensus        63 H~~svFavsl~P~~---~l~aTGG----------gDD~AflW~~~~ge--~~~eltgHKDSVt~~~Fshd----gtlLAT  123 (399)
T KOG0296|consen   63 HTDSVFAVSLHPNN---NLVATGG----------GDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHD----GTLLAT  123 (399)
T ss_pred             cCCceEEEEeCCCC---ceEEecC----------CCceEEEEEccCCc--ceeEecCCCCceEEEEEccC----ceEEEe
Confidence            45567788888854   8999998          89999999999987  44555899999999999999    999999


Q ss_pred             EcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      |+.+|.+ +|...++..      .-..+.-+.|+|.+..|++|+.||.+.+|.+.++.  ..+.+.+|..++++-.|.| 
T Consensus       124 GdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~--~~kv~~Gh~~~ct~G~f~p-  200 (399)
T KOG0296|consen  124 GDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA--LCKVMSGHNSPCTCGEFIP-  200 (399)
T ss_pred             cCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc--eeeEecCCCCCcccccccC-
Confidence            9999999 999887654      23456678899999999999999999999998763  3678899999999999999 


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeeeecc------------------------------------------------c
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNS------------------------------------------------K  192 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------------------------------~  192 (331)
                      +++.++++..||+|++|++.++++...+...                                                +
T Consensus       201 dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~  280 (399)
T KOG0296|consen  201 DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP  280 (399)
T ss_pred             CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence            7999999999999999999998765443310                                                0


Q ss_pred             CCCcceEEEEEecC--CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          193 IHKMGVCCIASIPS--DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       193 ~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                      .+...+.|+.+.|.  .-.+.|+|+.||+|.|||+... ++...  ..|..+|..+.|-++  ..+++++.++.++.|+.
T Consensus       281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~~R~~--c~he~~V~~l~w~~t--~~l~t~c~~g~v~~wDa  355 (399)
T KOG0296|consen  281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS-TLRHI--CEHEDGVTKLKWLNT--DYLLTACANGKVRQWDA  355 (399)
T ss_pred             cchhhhhhhhhcccccccchhhcccccceEEEEecccc-hhhee--ccCCCceEEEEEcCc--chheeeccCceEEeeec
Confidence            11122223333331  3357899999999999999984 55554  789999999999995  78999999999999998


Q ss_pred             cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      +.  ++++.++.||...|.+++++|+.         ++++|+| .|++.+|+++.
T Consensus       356 Rt--G~l~~~y~GH~~~Il~f~ls~~~---------~~vvT~s-~D~~a~VF~v~  398 (399)
T KOG0296|consen  356 RT--GQLKFTYTGHQMGILDFALSPQK---------RLVVTVS-DDNTALVFEVP  398 (399)
T ss_pred             cc--cceEEEEecCchheeEEEEcCCC---------cEEEEec-CCCeEEEEecC
Confidence            87  79999999999999999999998         7999999 99999999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.1e-35  Score=221.62  Aligned_cols=277  Identities=17%  Similarity=0.273  Sum_probs=223.1

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +++.++.++|.|.+   .+||+|+          .|..|.+|++....+....+ ++|.++|..+.|.++    +..|++
T Consensus        46 h~geI~~~~F~P~g---s~~aSgG----------~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d----~s~i~S  107 (338)
T KOG0265|consen   46 HKGEIYTIKFHPDG---SCFASGG----------SDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRD----GSHILS  107 (338)
T ss_pred             CcceEEEEEECCCC---CeEeecC----------CcceEEEEeccccccceeee-ccccceeEeeeeccC----CCEEEE
Confidence            45567777777755   8999999          69999999987765455554 799999999999999    999999


Q ss_pred             EcCCccE-EEecCCCcc------cCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107           88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (331)
                      ++.|.++ .||.++++.      |..-++++.-+.-|. ++.+++.||++++||+++..  +++.+. ....++++.|..
T Consensus       108 ~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--~~~t~~-~kyqltAv~f~d  184 (338)
T KOG0265|consen  108 CGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--AIKTFE-NKYQLTAVGFKD  184 (338)
T ss_pred             ecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc--hhhccc-cceeEEEEEecc
Confidence            9999999 999998765      567777777444454 46777889999999999764  366554 456799999994


Q ss_pred             CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC--CCceeeee
Q 020107          160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS--KPVNETSV  237 (331)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~  237 (331)
                       .+..+.+|+-|+.|++||++.......+..   |.+.|+.+..+| ++.++.+-+.|.++++||++...  +....++.
T Consensus       185 -~s~qv~sggIdn~ikvWd~r~~d~~~~lsG---h~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~  259 (338)
T KOG0265|consen  185 -TSDQVISGGIDNDIKVWDLRKNDGLYTLSG---HADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ  259 (338)
T ss_pred             -cccceeeccccCceeeeccccCcceEEeec---ccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEee
Confidence             888999999999999999999988888887   999999999999 99999999999999999998741  11111233


Q ss_pred             ec----CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107          238 CL----GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       238 ~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                      +|    ......++|+|++ ..+-+++.+..+++|+...  ...+..+.||.+.|..++|+|..         .+|.+++
T Consensus       260 g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~--r~~lyklpGh~gsvn~~~Fhp~e---------~iils~~  327 (338)
T KOG0265|consen  260 GHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTS--RRILYKLPGHYGSVNEVDFHPTE---------PIILSCS  327 (338)
T ss_pred             cchhhhhhhcceeeccCCC-CccccccccceEEEeeccc--ccEEEEcCCcceeEEEeeecCCC---------cEEEEec
Confidence            33    2345678999995 4444555566666676655  47888999999999999999998         5999999


Q ss_pred             cCCCeEEEEc
Q 020107          314 FYDRLLRIWM  323 (331)
Q Consensus       314 ~~d~~i~iW~  323 (331)
                       .|.+|++=.
T Consensus       328 -sdk~i~lge  336 (338)
T KOG0265|consen  328 -SDKTIYLGE  336 (338)
T ss_pred             -cCceeEeec
Confidence             899998743

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.9e-35  Score=243.46  Aligned_cols=281  Identities=15%  Similarity=0.240  Sum_probs=235.6

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      .++..+.|+..+   +.||.|+         .+-|.+.||+.....  ...-+.+|...+++++++|+    ++++|+|+
T Consensus       308 ~~I~t~~~N~tG---DWiA~g~---------~klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSpD----gq~iaTG~  369 (893)
T KOG0291|consen  308 QKILTVSFNSTG---DWIAFGC---------SKLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSPD----GQLIATGA  369 (893)
T ss_pred             ceeeEEEecccC---CEEEEcC---------CccceEEEEEeeccc--eeeeccccccceeeEEECCC----CcEEEecc
Confidence            456677776666   8999998         356899999999875  55556789999999999999    99999999


Q ss_pred             CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec-ccceeEEEeeCCCC
Q 020107           90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA-HEFELWATSFDVHQ  161 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~  161 (331)
                      .||++ +|+...+-+      |.+.|+.+.|+..++.+++++-||+|+.||+...+.  .+++.. ......|++..| .
T Consensus       370 eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN--fRTft~P~p~QfscvavD~-s  446 (893)
T KOG0291|consen  370 EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN--FRTFTSPEPIQFSCVAVDP-S  446 (893)
T ss_pred             CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce--eeeecCCCceeeeEEEEcC-C
Confidence            99999 999988644      899999999999999999999999999999987643  666653 234467888888 7


Q ss_pred             CcEEEEEcCCC-eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107          162 PHMVYTGSDDC-KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       162 ~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      +.++++|+.|. .|.+|++.+|+.+..+..   |.++|.+++|+| .+..|++++.|.+||+||+-.....+..  ..+.
T Consensus       447 GelV~AG~~d~F~IfvWS~qTGqllDiLsG---HEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEt--l~i~  520 (893)
T KOG0291|consen  447 GELVCAGAQDSFEIFVWSVQTGQLLDILSG---HEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVET--LEIR  520 (893)
T ss_pred             CCEEEeeccceEEEEEEEeecCeeeehhcC---CCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeee--Eeec
Confidence            88898888876 699999999998888877   999999999999 9999999999999999999876556666  7788


Q ss_pred             CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe----------------e----cCCcceeeeeecCCCCcc
Q 020107          241 GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY----------------A----KHGSLAYGADWQRGRSSL  300 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~----~h~~~v~~~~~~~~~~~~  300 (331)
                      ..+..++|+|+| ..++++..++.|.+|++....  .+.++                .    ......+.+++++||   
T Consensus       521 sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~--q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG---  594 (893)
T KOG0291|consen  521 SDVLAVSFRPDG-KELAVATLDGQITFFDIKEAV--QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADG---  594 (893)
T ss_pred             cceeEEEEcCCC-CeEEEEEecceEEEEEhhhce--eeccccchhhccccccccceeehhhcccCCceEEEEEcCCC---
Confidence            899999999998 667777788999999986631  11111                1    223578899999999   


Q ss_pred             cccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107          301 EGKRKNSLVATCSFYDRLLRIWMPESDCLT  330 (331)
Q Consensus       301 ~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~  330 (331)
                            ..|++|| ....|++|++.++.+.
T Consensus       595 ------~~IlAgG-~sn~iCiY~v~~~vll  617 (893)
T KOG0291|consen  595 ------KCILAGG-ESNSICIYDVPEGVLL  617 (893)
T ss_pred             ------CEEEecC-CcccEEEEECchhhee
Confidence                  6999999 9999999999998764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.4e-35  Score=214.17  Aligned_cols=261  Identities=14%  Similarity=0.199  Sum_probs=218.9

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ++++..++..|+.   ..||+|+           ...|++||+.+.+......+.+|+..|+++.|..+    ++.+++|
T Consensus        40 dsqVNrLeiTpdk---~~LAaa~-----------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d----grWMyTg  101 (311)
T KOG0315|consen   40 DSQVNRLEITPDK---KDLAAAG-----------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD----GRWMYTG  101 (311)
T ss_pred             ccceeeEEEcCCc---chhhhcc-----------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeec----CeEEEec
Confidence            5677778777776   8999997           88999999998875456667999999999999999    9999999


Q ss_pred             cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      ++||++ |||++...+     +.++|+++..+|+...|++|..+|.|++||+.+...... .+......|.++...| ++
T Consensus       102 seDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-liPe~~~~i~sl~v~~-dg  179 (311)
T KOG0315|consen  102 SEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-LIPEDDTSIQSLTVMP-DG  179 (311)
T ss_pred             CCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc-cCCCCCcceeeEEEcC-CC
Confidence            999999 999998654     579999999999999999999999999999988643221 1233456899999998 89


Q ss_pred             cEEEEEcCCCeEEEEEccCCCcee---eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKL---AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL  239 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  239 (331)
                      .+++.+...|.+++|++-+.....   .+..++.|...+..+.++| +.++|++++.|.+++||+.... -.+...+.+|
T Consensus       180 sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~-~kle~~l~gh  257 (311)
T KOG0315|consen  180 SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF-FKLELVLTGH  257 (311)
T ss_pred             cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc-eeeEEEeecC
Confidence            999999999999999998654322   2222456999999999999 9999999999999999999986 3444446889


Q ss_pred             CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107          240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQ  294 (331)
Q Consensus       240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  294 (331)
                      ...++..+||.++ .++++++++...++|++..  ++.+..+.+|.....+++..
T Consensus       258 ~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~--~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  258 QRWVWDCAFSADG-EYLVTASSDHTARLWDLSA--GKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             CceEEeeeeccCc-cEEEecCCCCceeeccccc--CceeeecCCcccccEEEEee
Confidence            9999999999998 7888888888888888887  68888999998877776643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.6e-35  Score=246.31  Aligned_cols=292  Identities=17%  Similarity=0.296  Sum_probs=232.4

Q ss_pred             eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107            5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   84 (331)
                      +..+++|+..++|.|.+   .+||+|+          .||.++|||+..+.  ....+++|.+.|.++.|+|+..  ...
T Consensus       101 Ka~He~Pvi~ma~~~~g---~LlAtgg----------aD~~v~VWdi~~~~--~th~fkG~gGvVssl~F~~~~~--~~l  163 (775)
T KOG0319|consen  101 KAIHEAPVITMAFDPTG---TLLATGG----------ADGRVKVWDIKNGY--CTHSFKGHGGVVSSLLFHPHWN--RWL  163 (775)
T ss_pred             hhccCCCeEEEEEcCCC---ceEEecc----------ccceEEEEEeeCCE--EEEEecCCCceEEEEEeCCccc--hhh
Confidence            34568899999999988   8999998          89999999999886  5566688999999999998742  346


Q ss_pred             EEEEcCCccE-EEecCCCcc-------c----------------------------------------------------
Q 020107           85 LAQADADGGL-LRDITGEKI-------S----------------------------------------------------  104 (331)
Q Consensus        85 l~~~~~dg~i-iw~~~~~~~-------~----------------------------------------------------  104 (331)
                      |++|..|+.+ +|++.....       |                                                    
T Consensus       164 L~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~  243 (775)
T KOG0319|consen  164 LASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLR  243 (775)
T ss_pred             eeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEec
Confidence            7888888887 676652111       1                                                    


Q ss_pred             --------------------------------------------------------------------------------
Q 020107          105 --------------------------------------------------------------------------------  104 (331)
Q Consensus       105 --------------------------------------------------------------------------------  104 (331)
                                                                                                      
T Consensus       244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n  323 (775)
T KOG0319|consen  244 EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN  323 (775)
T ss_pred             hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc
Confidence                                                                                            


Q ss_pred             -----------------------------------------CccEEEEEEcCCCCeEEEEecCCeEEEEEcccc--ceee
Q 020107          105 -----------------------------------------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVES--QLEV  141 (331)
Q Consensus       105 -----------------------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~  141 (331)
                                                               ...|.++....+|-+|++|+.|.++++|.++.+  +..+
T Consensus       324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~  403 (775)
T KOG0319|consen  324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC  403 (775)
T ss_pred             hhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhh
Confidence                                                     122334442234557777888888888877432  2334


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc---eeeee---cccCCCcceEEEEEecCCCCEEEEEe
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF---KLAFQ---NSKIHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      +....+|...|.+++++.....+|++++.|+++++|++...+.   ...+.   ....|...|++++++| +..++|||+
T Consensus       404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~S  482 (775)
T KOG0319|consen  404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGS  482 (775)
T ss_pred             hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecc
Confidence            5556789999999999876778999999999999999987221   11121   1245999999999999 999999999


Q ss_pred             cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107          216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR  295 (331)
Q Consensus       216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  295 (331)
                      .|.+.+||++.+. + +.-.+.+|...|+++.|+|.. ..++++++|.++++|.+.+  ..+++++.||+..|..+.|-.
T Consensus       483 qDktaKiW~le~~-~-l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~--fSClkT~eGH~~aVlra~F~~  557 (775)
T KOG0319|consen  483 QDKTAKIWDLEQL-R-LLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSIST--FSCLKTFEGHTSAVLRASFIR  557 (775)
T ss_pred             cccceeeecccCc-e-EEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEecc--ceeeeeecCccceeEeeeeee
Confidence            9999999999953 3 344478999999999999986 7788888899999999998  599999999999999999999


Q ss_pred             CCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          296 GRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       296 ~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ++         ..|+|++ .||.|++|++.++..
T Consensus       558 ~~---------~qliS~~-adGliKlWnikt~eC  581 (775)
T KOG0319|consen  558 NG---------KQLISAG-ADGLIKLWNIKTNEC  581 (775)
T ss_pred             CC---------cEEEecc-CCCcEEEEeccchhh
Confidence            99         6999999 999999999998753

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.8e-36  Score=240.70  Aligned_cols=285  Identities=18%  Similarity=0.262  Sum_probs=234.2

Q ss_pred             eeecCcceeEeeecCCC-CCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107            6 CELDGNADAVEFCPQDS-YHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~-~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   84 (331)
                      +.+.||...|.+..+.| .+.+|++++          .|+.|+||++-... .+...+.+|..+|.+++|++.    +..
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~g----------mD~~vklW~vy~~~-~~lrtf~gH~k~Vrd~~~s~~----g~~  272 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGG----------MDGLVKLWNVYDDR-RCLRTFKGHRKPVRDASFNNC----GTS  272 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecC----------CCceEEEEEEecCc-ceehhhhcchhhhhhhhcccc----CCe
Confidence            34566655444444333 337999998          79999999998855 344455899999999999999    999


Q ss_pred             EEEEcCCccE-EEecCCCccc-----CccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEee
Q 020107           85 LAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSF  157 (331)
Q Consensus        85 l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  157 (331)
                      +++++.|+.+ +||.+++++.     ...++|+.|+|++ +.+++|+.|+.|+.||++++++  +.++..|-+.|..+.|
T Consensus       273 fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~hLg~i~~i~F  350 (503)
T KOG0282|consen  273 FLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQEYDRHLGAILDITF  350 (503)
T ss_pred             eeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HHHHHhhhhheeeeEE
Confidence            9999999999 9999999873     5678999999998 7799999999999999999975  8888889999999999


Q ss_pred             CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC-Cceeee
Q 020107          158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK-PVNETS  236 (331)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~  236 (331)
                      -+ ++..+++.++|+.++||+.+.+..+..+...  +.....++..+| ++.+++.-+.|+.|.+|.+...-+ .....+
T Consensus       351 ~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f  426 (503)
T KOG0282|consen  351 VD-EGRRFISSSDDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF  426 (503)
T ss_pred             cc-CCceEeeeccCccEEEEEcCCCccchhhcch--hhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhh
Confidence            98 8899999999999999999988665544432  344567889999 999999999999999998765311 111223


Q ss_pred             eecC--CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107          237 VCLG--GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       237 ~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  314 (331)
                      .+|.  +--..+.||||+ .+++++.+++.+.+|+...  .+++..++.|.+++..+.|+|..+        ..+|||| 
T Consensus       427 eGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt--~kl~~~lkah~~~ci~v~wHP~e~--------Skvat~~-  494 (503)
T KOG0282|consen  427 EGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKT--TKLVSKLKAHDQPCIGVDWHPVEP--------SKVATCG-  494 (503)
T ss_pred             cceeccCceeeEEEcCCC-CeEEeecCCccEEEeechh--hhhhhccccCCcceEEEEecCCCc--------ceeEecc-
Confidence            4553  446678999997 7777777888888888776  488889999999999999999987        8999999 


Q ss_pred             CCCeEEEEc
Q 020107          315 YDRLLRIWM  323 (331)
Q Consensus       315 ~d~~i~iW~  323 (331)
                      .||.|++|+
T Consensus       495 w~G~Ikiwd  503 (503)
T KOG0282|consen  495 WDGLIKIWD  503 (503)
T ss_pred             cCceeEecC
Confidence            999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4e-35  Score=245.14  Aligned_cols=277  Identities=14%  Similarity=0.175  Sum_probs=234.2

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+..+.|.  +|..++||+++          ..+.+++|++.+..  . .+..+|+..|.++....+    +.+|++|+.
T Consensus       325 EI~Dm~~l--G~e~~~laVAT----------Ns~~lr~y~~~~~~--c-~ii~GH~e~vlSL~~~~~----g~llat~sK  385 (775)
T KOG0319|consen  325 EILDMKFL--GPEESHLAVAT----------NSPELRLYTLPTSY--C-QIIPGHTEAVLSLDVWSS----GDLLATGSK  385 (775)
T ss_pred             hheeeeec--CCccceEEEEe----------CCCceEEEecCCCc--e-EEEeCchhheeeeeeccc----CcEEEEecC
Confidence            34444443  44458999999          79999999888864  3 366999999999996666    779999999


Q ss_pred             CccE-EEecCCC----------cccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccce---eeee----eeecccce
Q 020107           91 DGGL-LRDITGE----------KISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQL---EVLQ----QWKAHEFE  151 (331)
Q Consensus        91 dg~i-iw~~~~~----------~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---~~~~----~~~~~~~~  151 (331)
                      |.++ +|.++..          ..|...|.+++++..+ .+|++++.|+++++|++...+.   ....    ....|+..
T Consensus       386 D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd  465 (775)
T KOG0319|consen  386 DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD  465 (775)
T ss_pred             CceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence            9999 9988432          2378889999997655 5689999999999999986211   1111    23579999


Q ss_pred             eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107          152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP  231 (331)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  231 (331)
                      |++++.+| +..++++|+.|.+.+||++........+..   |...|.++.|+| ..+.++|++.|++|+||.+.+. .+
T Consensus       466 IN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsG---H~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~f-SC  539 (775)
T KOG0319|consen  466 INCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSG---HTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTF-SC  539 (775)
T ss_pred             ccceEecC-CCceEEecccccceeeecccCceEEEEeeC---CccceEEEEecc-ccceeEeccCCceEEEEEeccc-ee
Confidence            99999999 779999999999999999997776777776   999999999999 8899999999999999999996 56


Q ss_pred             ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107          232 VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVAT  311 (331)
Q Consensus       232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  311 (331)
                      +.+ +.+|...|..+.|-.++ ..++++++++-+++|++..  ..++.++.+|++.|++++.+|..         .+++|
T Consensus       540 lkT-~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt--~eC~~tlD~H~DrvWaL~~~~~~---------~~~~t  606 (775)
T KOG0319|consen  540 LKT-FEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKT--NECEMTLDAHNDRVWALSVSPLL---------DMFVT  606 (775)
T ss_pred             eee-ecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccc--hhhhhhhhhccceeEEEeecCcc---------ceeEe
Confidence            665 68899999999999987 7889999999999999988  58999999999999999999998         69999


Q ss_pred             eecCCCeEEEEcCCC
Q 020107          312 CSFYDRLLRIWMPES  326 (331)
Q Consensus       312 ~~~~d~~i~iW~~~~  326 (331)
                      |+ .||.|.+|.=.+
T Consensus       607 gg-~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  607 GG-GDGRIIFWKDVT  620 (775)
T ss_pred             cC-CCeEEEEeecCc
Confidence            99 999999997443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.8e-34  Score=212.31  Aligned_cols=243  Identities=16%  Similarity=0.246  Sum_probs=205.4

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC----------cccCccEEEEEEcCCCCeEEEEecCCe
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE----------KISSSMCLCLEWNPSATSITVGLSDGS  128 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~dg~  128 (331)
                      ....+|.+.+..++|+|..   |..||+++.|..+ +|+....          ..|+..|.+++|+|.|++|++|+.|.+
T Consensus         8 ~~~~gh~~r~W~~awhp~~---g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGK---GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             EeecCCCCcEEEEEeccCC---ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            3457899999999999984   5689999999999 9998842          237899999999999999999999999


Q ss_pred             EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC
Q 020107          129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS  208 (331)
Q Consensus       129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  208 (331)
                      +.||.-..+.++++..+.+|+..|.+++|++ ++++|+++++|..|-||.+............++|...|..+.|+| ..
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~  162 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TE  162 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-Cc
Confidence            9999999999999999999999999999998 899999999999999999986554333333344999999999999 99


Q ss_pred             CEEEEEecCCeEEEEEecC-CCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcc
Q 020107          209 NTLLTGSYDEYLRVWDVRS-ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL  287 (331)
Q Consensus       209 ~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  287 (331)
                      .+|+++++|.+|++|+-.. ..-.....+.+|...|++++|+|.+ ..+++++.+..+++|.....      .-..|...
T Consensus       163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~------~~~~~sr~  235 (312)
T KOG0645|consen  163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTD------LSGMHSRA  235 (312)
T ss_pred             ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccC------cchhcccc
Confidence            9999999999999998773 2223333467899999999999997 67777778888888886532      12247789


Q ss_pred             eeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          288 AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       288 v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ++.+.|. ++          .|+|++ .|+.|+++.-..
T Consensus       236 ~Y~v~W~-~~----------~IaS~g-gD~~i~lf~~s~  262 (312)
T KOG0645|consen  236 LYDVPWD-NG----------VIASGG-GDDAIRLFKESD  262 (312)
T ss_pred             eEeeeec-cc----------ceEecc-CCCEEEEEEecC
Confidence            9999999 54          899999 999999998664

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.7e-34  Score=246.56  Aligned_cols=279  Identities=21%  Similarity=0.342  Sum_probs=226.7

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+.++.|++.+   ++|++++          .++.+++|+.......+.....+|...|++++|+|+    ++++++++.
T Consensus       161 sv~~~~fs~~g---~~l~~~~----------~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d----~~~l~s~s~  223 (456)
T KOG0266|consen  161 SVTCVDFSPDG---RALAAAS----------SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD----GSYLLSGSD  223 (456)
T ss_pred             ceEEEEEcCCC---CeEEEcc----------CCCcEEEeecccccchhhccccccccceeeeEECCC----CcEEEEecC
Confidence            34445555554   8899997          799999999955431123333789999999999999    999999999


Q ss_pred             CccE-EEecCCC-------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           91 DGGL-LRDITGE-------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        91 dg~i-iw~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      |+++ +|++...       +.|...|++++|+|+++.+++|+.|++|++||+++++  ++..+.+|...|++++|++ ++
T Consensus       224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--~~~~l~~hs~~is~~~f~~-d~  300 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--CVRKLKGHSDGISGLAFSP-DG  300 (456)
T ss_pred             CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe--EEEeeeccCCceEEEEECC-CC
Confidence            9999 9999332       2388999999999999999999999999999999874  4889999999999999998 88


Q ss_pred             cEEEEEcCCCeEEEEEccCCC--ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107          163 HMVYTGSDDCKFSGWDIRESP--FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      ++|++++.|+.|++||+.++.  +...+....... .++++.|+| ++.++++++.|+.+++||++....+...  ..|.
T Consensus       301 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~--~~~~  376 (456)
T KOG0266|consen  301 NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTY--TGHS  376 (456)
T ss_pred             CEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeee--cccC
Confidence            999999999999999999998  345555422122 699999999 9999999999999999999986444443  5665


Q ss_pred             Cc---eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC-CcceeeeeecCCCCcccccccCcEEEEeec-C
Q 020107          241 GG---VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH-GSLAYGADWQRGRSSLEGKRKNSLVATCSF-Y  315 (331)
Q Consensus       241 ~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-~  315 (331)
                      ..   +.+...++.+ ..+++++.+..+.+|++..  ...+..+.+| ...+..+.++|..         +++++++. .
T Consensus       377 ~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s--~~~~~~l~~h~~~~~~~~~~~~~~---------~~~~s~s~~~  444 (456)
T KOG0266|consen  377 NLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSS--GGILQRLEGHSKAAVSDLSSHPTE---------NLIASSSFEG  444 (456)
T ss_pred             CcceeEecccccCCC-CeEEEEeCCceEEEEeCCc--cchhhhhcCCCCCceeccccCCCc---------CeeeecCcCC
Confidence            53   4444555664 6777777888888888877  5778888899 8999999999998         68888862 4


Q ss_pred             CCeEEEEcCC
Q 020107          316 DRLLRIWMPE  325 (331)
Q Consensus       316 d~~i~iW~~~  325 (331)
                      |+.+++|..+
T Consensus       445 d~~~~~w~~~  454 (456)
T KOG0266|consen  445 DGLIRLWKYD  454 (456)
T ss_pred             CceEEEecCC
Confidence            8899999865

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.8e-34  Score=238.48  Aligned_cols=280  Identities=18%  Similarity=0.289  Sum_probs=225.9

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+.+|.|+.++   ++|++|+          +|-.+++|.++..+......+.+|...|-+.-|..+    ...+.+.+.
T Consensus       147 di~si~Ws~DS---r~l~~gs----------rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~----~~~l~tvsk  209 (893)
T KOG0291|consen  147 DITSIDWSDDS---RLLVTGS----------RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN----SLDLYTVSK  209 (893)
T ss_pred             ceeEEEeccCC---ceEEecc----------ccceEEEEEeccccccceEeccCCCcceEEEEeccC----cceEEEEec
Confidence            35566676666   8999998          899999999998775556677899999999999998    778999999


Q ss_pred             CccE-EEecCC------------------------Cc-c-------------------------c---------------
Q 020107           91 DGGL-LRDITG------------------------EK-I-------------------------S---------------  104 (331)
Q Consensus        91 dg~i-iw~~~~------------------------~~-~-------------------------~---------------  104 (331)
                      ||.+ +|....                        .+ .                         |               
T Consensus       210 dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f  289 (893)
T KOG0291|consen  210 DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEF  289 (893)
T ss_pred             CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCee
Confidence            9999 887651                        11 0                         0               


Q ss_pred             -----------------CccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEE
Q 020107          105 -----------------SSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY  166 (331)
Q Consensus       105 -----------------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  166 (331)
                                       ..+|..++|+..|..||.|+. -|++.+|+......  +...++|...+++++++| ++++++
T Consensus       290 ~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSp-Dgq~ia  366 (893)
T KOG0291|consen  290 GLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSP-DGQLIA  366 (893)
T ss_pred             EEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECC-CCcEEE
Confidence                             233455566666666666665 36777777766543  666788999999999999 899999


Q ss_pred             EEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEE
Q 020107          167 TGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRI  246 (331)
Q Consensus       167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  246 (331)
                      +|+.||.|+|||..++-|...|..   |+..|+.+.|+. .++.+++.+.||+|+.||+... +...++..+..-...++
T Consensus       367 TG~eDgKVKvWn~~SgfC~vTFte---Hts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRY-rNfRTft~P~p~Qfscv  441 (893)
T KOG0291|consen  367 TGAEDGKVKVWNTQSGFCFVTFTE---HTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSPEPIQFSCV  441 (893)
T ss_pred             eccCCCcEEEEeccCceEEEEecc---CCCceEEEEEEe-cCCEEEEeecCCeEEeeeeccc-ceeeeecCCCceeeeEE
Confidence            999999999999999999999988   999999999999 9999999999999999999874 55555334445556788


Q ss_pred             EECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          247 KHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +..|.  +.++++|..+...|+-+...+++++..+.||+++|.+++|+|.+         ..|+|+| +|.+||+||+-.
T Consensus       442 avD~s--GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~---------~~LaS~S-WDkTVRiW~if~  509 (893)
T KOG0291|consen  442 AVDPS--GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG---------SLLASGS-WDKTVRIWDIFS  509 (893)
T ss_pred             EEcCC--CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc---------CeEEecc-ccceEEEEEeec
Confidence            88888  56677776666544443344489999999999999999999999         6999999 999999999854


Q ss_pred             c
Q 020107          327 D  327 (331)
Q Consensus       327 ~  327 (331)
                      .
T Consensus       510 s  510 (893)
T KOG0291|consen  510 S  510 (893)
T ss_pred             c
Confidence            3

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-35  Score=218.57  Aligned_cols=279  Identities=14%  Similarity=0.167  Sum_probs=237.7

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ..++-.++|+|.-|+|-+|++++          +||.-.+-+-+++.  ..-.+.+|.++|+....+.+    ...-|++
T Consensus        14 trpvvdl~~s~itp~g~flisa~----------kd~~pmlr~g~tgd--wigtfeghkgavw~~~l~~n----a~~aasa   77 (334)
T KOG0278|consen   14 TRPVVDLAFSPITPDGYFLISAS----------KDGKPMLRNGDTGD--WIGTFEGHKGAVWSATLNKN----ATRAASA   77 (334)
T ss_pred             CcceeEEeccCCCCCceEEEEec----------cCCCchhccCCCCC--cEEeeeccCcceeeeecCch----hhhhhhh
Confidence            44678899999999999999998          78888877777665  55556899999999999888    7788899


Q ss_pred             cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      +.|-+. +|+.-++..     |+..|.+++|+.|.++|++|+.+..+++||++..+ .+..++.+|.+.|..+.|.. ..
T Consensus        78 aadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~-eD  155 (334)
T KOG0278|consen   78 AADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCH-ED  155 (334)
T ss_pred             cccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEec-cC
Confidence            988888 999877653     67889999999999999999999999999999866 45678899999999999996 77


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG  242 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  242 (331)
                      +.|++.+.|++||+||.+++...+.+..    ..+|+++.+++ ++.+|.++ ..+.|++||..+. .++..  ......
T Consensus       156 ~~iLSSadd~tVRLWD~rTgt~v~sL~~----~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf-~~lKs--~k~P~n  226 (334)
T KOG0278|consen  156 KCILSSADDKTVRLWDHRTGTEVQSLEF----NSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSF-GLLKS--YKMPCN  226 (334)
T ss_pred             ceEEeeccCCceEEEEeccCcEEEEEec----CCCCcceeecc-CCCEEEEe-cCceeEEeccccc-cceee--ccCccc
Confidence            8888889999999999999998888886    78899999999 88765554 6788999999986 55665  667778


Q ss_pred             eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe-ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107          243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY-AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI  321 (331)
Q Consensus       243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i  321 (331)
                      |.+...+|+. +.+++++.+..++.++...  ++.+..+ ++|.++|-++.|+|++         ...++|+ +||+|++
T Consensus       227 V~SASL~P~k-~~fVaGged~~~~kfDy~T--geEi~~~nkgh~gpVhcVrFSPdG---------E~yAsGS-EDGTirl  293 (334)
T KOG0278|consen  227 VESASLHPKK-EFFVAGGEDFKVYKFDYNT--GEEIGSYNKGHFGPVHCVRFSPDG---------ELYASGS-EDGTIRL  293 (334)
T ss_pred             cccccccCCC-ceEEecCcceEEEEEeccC--CceeeecccCCCCceEEEEECCCC---------ceeeccC-CCceEEE
Confidence            9999999997 7888887777755566555  6777775 8999999999999999         5999999 9999999


Q ss_pred             EcCCCc
Q 020107          322 WMPESD  327 (331)
Q Consensus       322 W~~~~~  327 (331)
                      |.+..+
T Consensus       294 WQt~~~  299 (334)
T KOG0278|consen  294 WQTTPG  299 (334)
T ss_pred             EEecCC
Confidence            998654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.6e-33  Score=257.51  Aligned_cols=280  Identities=16%  Similarity=0.205  Sum_probs=218.1

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc---c--eEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK---N--LELLYRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~---~--~~~~~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      .+.+.+++|+|.+   ++||+|+          .|+.|+||++.....   .  .......+...|.+++|+|..   +.
T Consensus       483 ~~~V~~i~fs~dg---~~latgg----------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~  546 (793)
T PLN00181        483 SNLVCAIGFDRDG---EFFATAG----------VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYI---KS  546 (793)
T ss_pred             CCcEEEEEECCCC---CEEEEEe----------CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCC---CC
Confidence            4457778888766   8999998          799999999754210   0  011112345679999999863   67


Q ss_pred             eEEEEcCCccE-EEecCCCc------ccCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           84 FLAQADADGGL-LRDITGEK------ISSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      +|++++.||.+ +|++.+.+      .|...|++++|+| ++.+|++|+.||.|++||++++..  +..+..+ ..+.++
T Consensus       547 ~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--~~~~~~~-~~v~~v  623 (793)
T PLN00181        547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--IGTIKTK-ANICCV  623 (793)
T ss_pred             EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE--EEEEecC-CCeEEE
Confidence            99999999999 99998754      3788999999997 788999999999999999987654  5566544 578999


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC-----
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS-----  229 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----  229 (331)
                      .|++.++.++++|+.||.|++||+++.+. ...+..   |...|.++.|.  ++.+|++++.|++|++||++...     
T Consensus       624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~  698 (793)
T PLN00181        624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINE  698 (793)
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC---CCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCC
Confidence            99766789999999999999999987652 334444   99999999996  57799999999999999998531     


Q ss_pred             CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE-----------EeecCCcceeeeeecCCCC
Q 020107          230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE-----------TYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~h~~~v~~~~~~~~~~  298 (331)
                      .++.. +.+|...+..++|+|++ .++++++.++.+.+|+..........           ....|...|.+++|+|++ 
T Consensus       699 ~~l~~-~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~-  775 (793)
T PLN00181        699 TPLHS-FMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS-  775 (793)
T ss_pred             cceEE-EcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC-
Confidence            33443 56889999999999986 67777778888888886542111111           123456679999999998 


Q ss_pred             cccccccCcEEEEeecCCCeEEEEcC
Q 020107          299 SLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       299 ~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                              .+|++++ .||.|+||++
T Consensus       776 --------~~lva~~-~dG~I~i~~~  792 (793)
T PLN00181        776 --------STLVAAN-STGNIKILEM  792 (793)
T ss_pred             --------CeEEEec-CCCcEEEEec
Confidence                    6999999 9999999986

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-34  Score=238.68  Aligned_cols=273  Identities=21%  Similarity=0.303  Sum_probs=231.6

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      ...-+.|+..    +.||+|.           ...|++|+.....  +..+...+...|+++.|+++    +.+|++|..
T Consensus       179 Y~nlldWss~----n~laVal-----------g~~vylW~~~s~~--v~~l~~~~~~~vtSv~ws~~----G~~LavG~~  237 (484)
T KOG0305|consen  179 YLNLLDWSSA----NVLAVAL-----------GQSVYLWSASSGS--VTELCSFGEELVTSVKWSPD----GSHLAVGTS  237 (484)
T ss_pred             hhhHhhcccC----CeEEEEe-----------cceEEEEecCCCc--eEEeEecCCCceEEEEECCC----CCEEEEeec
Confidence            3344566633    6899996           7899999998885  55565666788999999999    999999999


Q ss_pred             CccE-EEecCCCc------c-cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           91 DGGL-LRDITGEK------I-SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        91 dg~i-iw~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      +|.+ |||....+      . |...|-+++|+  +..+.+|+.++.|..+|++..+.. ...+.+|...|..++|++ ++
T Consensus       238 ~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~-d~  313 (484)
T KOG0305|consen  238 DGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV-VSTLQGHRQEVCGLKWSP-DG  313 (484)
T ss_pred             CCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh-hhhhhcccceeeeeEECC-CC
Confidence            9999 99976543      3 78899999997  678999999999999999986532 235889999999999998 88


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe--cCCeEEEEEecCCCCCceeeeeecC
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS--YDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      .++++|+.|+.+.|||.........+..   |.+.|.+++|+|....+||+|+  .|++|++||..++ ..+..  ..-.
T Consensus       314 ~~lASGgnDN~~~Iwd~~~~~p~~~~~~---H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~--vdtg  387 (484)
T KOG0305|consen  314 NQLASGGNDNVVFIWDGLSPEPKFTFTE---HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDS--VDTG  387 (484)
T ss_pred             CeeccCCCccceEeccCCCccccEEEec---cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecc--cccC
Confidence            9999999999999999987776777776   9999999999998899999986  6999999999985 55555  6678


Q ss_pred             CceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107          241 GGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL  319 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i  319 (331)
                      +.|.+|.|++..+.++.+.| +++.+.+|++..  .+.+..+.+|...|..++++|++         ..+++++ .|.++
T Consensus       388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~~RVl~la~SPdg---------~~i~t~a-~DETl  455 (484)
T KOG0305|consen  388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAELLGHTSRVLYLALSPDG---------ETIVTGA-ADETL  455 (484)
T ss_pred             CceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeeeecCCcceeEEEEECCCC---------CEEEEec-ccCcE
Confidence            89999999999756666665 456678888877  57888899999999999999999         6999999 99999


Q ss_pred             EEEcCCC
Q 020107          320 RIWMPES  326 (331)
Q Consensus       320 ~iW~~~~  326 (331)
                      ++|++-+
T Consensus       456 rfw~~f~  462 (484)
T KOG0305|consen  456 RFWNLFD  462 (484)
T ss_pred             EeccccC
Confidence            9999865

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.5e-33  Score=226.16  Aligned_cols=287  Identities=16%  Similarity=0.201  Sum_probs=232.1

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      .|...+....++|.|.|+|+|.          ..|.||||+....+..++..++.-.++|.+++|+++    ++.|++.+
T Consensus        57 EH~~~vtVAkySPsG~yiASGD----------~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d----s~RI~avG  122 (603)
T KOG0318|consen   57 EHAHQVTVAKYSPSGFYIASGD----------VSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD----SKRIAAVG  122 (603)
T ss_pred             cccceeEEEEeCCCceEEeecC----------CcCcEEEEeccCcceeeeeeeeecccccccceeCCC----CcEEEEEe
Confidence            3444444444444458999997          899999999988665666666777899999999999    66666554


Q ss_pred             C-CccE----EEecCCCc----ccCccEEEEEEcCCCCe-EEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107           90 A-DGGL----LRDITGEK----ISSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        90 ~-dg~i----iw~~~~~~----~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (331)
                      + .+..    +||..+..    -|...|++++|-|..++ +++|++|++|.+|+-.-  ++....+..|..-|.++.|+|
T Consensus       123 EGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP--FKFk~s~r~HskFV~~VRysP  200 (603)
T KOG0318|consen  123 EGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP--FKFKSSFREHSKFVNCVRYSP  200 (603)
T ss_pred             cCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC--eeeeecccccccceeeEEECC
Confidence            3 3333    88876532    37889999999998886 99999999999998543  344667788999999999999


Q ss_pred             CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec
Q 020107          160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL  239 (331)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  239 (331)
                       ++.++++++.||++.+||-.+++....+....+|++.|.+++|+| |+..++|.+.|.+++|||..+. ..+.++....
T Consensus       201 -DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~  277 (603)
T KOG0318|consen  201 -DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGS  277 (603)
T ss_pred             -CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeecc-ceEEEeecCC
Confidence             799999999999999999999999888886677999999999999 9999999999999999999985 5555422222


Q ss_pred             C--CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107          240 G--GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR  317 (331)
Q Consensus       240 ~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~  317 (331)
                      .  ..-..+.|-.   ..+++.+..+.+.+++..+.  ..+..+.||...|+++..+|++         .+|.||+ .||
T Consensus       278 ~v~dqqvG~lWqk---d~lItVSl~G~in~ln~~d~--~~~~~i~GHnK~ITaLtv~~d~---------~~i~Sgs-yDG  342 (603)
T KOG0318|consen  278 TVEDQQVGCLWQK---DHLITVSLSGTINYLNPSDP--SVLKVISGHNKSITALTVSPDG---------KTIYSGS-YDG  342 (603)
T ss_pred             chhceEEEEEEeC---CeEEEEEcCcEEEEecccCC--ChhheecccccceeEEEEcCCC---------CEEEeec-cCc
Confidence            2  3344556663   56888888898888888775  5888999999999999999999         6999999 999


Q ss_pred             eEEEEcCCCcccC
Q 020107          318 LLRIWMPESDCLT  330 (331)
Q Consensus       318 ~i~iW~~~~~~~~  330 (331)
                      .|.-|+..++...
T Consensus       343 ~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  343 HINSWDSGSGTSD  355 (603)
T ss_pred             eEEEEecCCcccc
Confidence            9999999887643

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.9e-34  Score=217.33  Aligned_cols=243  Identities=21%  Similarity=0.318  Sum_probs=211.6

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC-------cccCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE-------KISSSMCLCLEWNPSATSITVGLSDGSVSI  131 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  131 (331)
                      ....+|.+.|+.+.|+|+    +..||+|+.|..| +|++...       +.|.+.|..+.|.++++.+++++.|.+|+.
T Consensus        41 m~l~gh~geI~~~~F~P~----gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPD----GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG  116 (338)
T ss_pred             hhcCCCcceEEEEEECCC----CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence            345789999999999998    9999999999999 9996542       358999999999999999999999999999


Q ss_pred             EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107          132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      ||.++++.  ++.+++|..-|+++.-+..+..++.+++.|+++++||+|+...++.+..    +..++++.|.. .+..+
T Consensus       117 wD~~tG~~--~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~----kyqltAv~f~d-~s~qv  189 (338)
T KOG0265|consen  117 WDAETGKR--IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN----KYQLTAVGFKD-TSDQV  189 (338)
T ss_pred             Eeccccee--eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc----ceeEEEEEecc-cccce
Confidence            99999965  8889999999999986655677899999999999999999888877764    77899999998 88999


Q ss_pred             EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc--ccceeEEeecCCc---
Q 020107          212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE--KAEVLETYAKHGS---  286 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~---  286 (331)
                      .+|+-|+.|++||++.... +. .+.+|..+|+.+..+|++ ..+++-++++.+++|+++..  ..+++..+.+|..   
T Consensus       190 ~sggIdn~ikvWd~r~~d~-~~-~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe  266 (338)
T KOG0265|consen  190 ISGGIDNDIKVWDLRKNDG-LY-TLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE  266 (338)
T ss_pred             eeccccCceeeeccccCcc-eE-EeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence            9999999999999998533 33 358999999999999998 78899999999999999763  3556777877643   


Q ss_pred             -ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          287 -LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       287 -~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                       ....++|+|++         +.+.+++ .|+.+++||...
T Consensus       267 knlL~cswsp~~---------~~i~ags-~dr~vyvwd~~~  297 (338)
T KOG0265|consen  267 KNLLKCSWSPNG---------TKITAGS-ADRFVYVWDTTS  297 (338)
T ss_pred             hhcceeeccCCC---------Ccccccc-ccceEEEeeccc
Confidence             56678999998         6888888 999999999866

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.8e-35  Score=227.51  Aligned_cols=258  Identities=15%  Similarity=0.252  Sum_probs=220.1

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI  103 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~  103 (331)
                      ..+++|.          +|++|+|||..+..  ....+.+|++.|.|+.|...      .|++|+.|.++ +||++++++
T Consensus       208 ~kiVSGl----------rDnTikiWD~n~~~--c~~~L~GHtGSVLCLqyd~r------viisGSSDsTvrvWDv~tge~  269 (499)
T KOG0281|consen  208 EKIVSGL----------RDNTIKIWDKNSLE--CLKILTGHTGSVLCLQYDER------VIVSGSSDSTVRVWDVNTGEP  269 (499)
T ss_pred             hhhhccc----------ccCceEEeccccHH--HHHhhhcCCCcEEeeeccce------EEEecCCCceEEEEeccCCch
Confidence            5688887          89999999999876  44555899999999999765      99999999999 999999886


Q ss_pred             ------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce-eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107          104 ------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL-EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG  176 (331)
Q Consensus       104 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (331)
                            |...|..+.|+  ..++++++.|.++.+||+....- .....+.+|...|+.+.|+.   +++++++.|.+|++
T Consensus       270 l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikv  344 (499)
T KOG0281|consen  270 LNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKV  344 (499)
T ss_pred             hhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEE
Confidence                  67889999996  47899999999999999987542 22345789999999999864   69999999999999


Q ss_pred             EEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeE
Q 020107          177 WDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLV  256 (331)
Q Consensus       177 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  256 (331)
                      |++.+.+.+..+..   |+..|.|+.+   .++++++|+.|.+|++||+..+ .++.. +.+|+.-|.++.|..   ..+
T Consensus       345 W~~st~efvRtl~g---HkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G-~cLRv-LeGHEeLvRciRFd~---krI  413 (499)
T KOG0281|consen  345 WSTSTCEFVRTLNG---HKRGIACLQY---RDRLVVSGSSDNTIRLWDIECG-ACLRV-LEGHEELVRCIRFDN---KRI  413 (499)
T ss_pred             Eeccceeeehhhhc---ccccceehhc---cCeEEEecCCCceEEEEecccc-HHHHH-HhchHHhhhheeecC---cee
Confidence            99999998888877   9999999988   6799999999999999999996 44443 589999999999986   578


Q ss_pred             EEEEecCcEEEEEEcCcccc-------eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          257 LAACMHNGFAVVKVGGEKAE-------VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ++++.|+.+++|++......       ++.++..|.+.|..+.|..-           .+++++ .|.+|-|||+.++.
T Consensus       414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-----------qIvsss-HddtILiWdFl~~~  480 (499)
T KOG0281|consen  414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-----------QIISSS-HDDTILIWDFLNGP  480 (499)
T ss_pred             eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-----------EEEecc-CCCeEEEEEcCCCC
Confidence            89999999999999764222       45566689999999999764           688888 89999999997763

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.2e-34  Score=219.86  Aligned_cols=283  Identities=17%  Similarity=0.256  Sum_probs=241.4

Q ss_pred             eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc------eEEeEeeecCcEeEEEEcCCCC
Q 020107            6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN------LELLYRMDTAGIFDIKWSPVGG   79 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~   79 (331)
                      +--..|+.|..|+|++   +||++|+          .||.|.+|+..+++..      ....+-.+..+|.|+.|+.+  
T Consensus       210 Fg~KSh~EcA~FSPDg---qyLvsgS----------vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--  274 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDG---QYLVSGS----------VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--  274 (508)
T ss_pred             cccccchhheeeCCCC---ceEeecc----------ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--
Confidence            3345688888888887   9999999          8999999999877521      11223346789999999999  


Q ss_pred             CCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccce
Q 020107           80 NAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFE  151 (331)
Q Consensus        80 ~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  151 (331)
                        ..+||+|+.||.+ +|.+.++++       |...|+|+.|+.|+..+++++.|.++++.-+.+++.  ++.+++|...
T Consensus       275 --sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~--LKEfrGHsSy  350 (508)
T KOG0275|consen  275 --SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC--LKEFRGHSSY  350 (508)
T ss_pred             --HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh--HHHhcCcccc
Confidence              8999999999999 999999876       788999999999999999999999999999999965  8999999999


Q ss_pred             eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107          152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP  231 (331)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  231 (331)
                      |+...|.+ +++.+++++.||+|++|+..+.++...+.. .+...+|+++..-|.++..++++...++|.+-++..  +.
T Consensus       351 vn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--Qv  426 (508)
T KOG0275|consen  351 VNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKP-LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QV  426 (508)
T ss_pred             ccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccC-CCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eE
Confidence            99999997 899999999999999999999999988887 446788999999997888999999999999999875  44


Q ss_pred             ceeeee--ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEE
Q 020107          232 VNETSV--CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLV  309 (331)
Q Consensus       232 ~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  309 (331)
                      +..+..  ...+..-+.+.+|.| ..+.+.+.|+.++.+.+..  +.+-.++.-|...|.+++-+|..         ++|
T Consensus       427 VrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~s--G~LE~tl~VhEkdvIGl~HHPHq---------Nll  494 (508)
T KOG0275|consen  427 VRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLS--GKLERTLPVHEKDVIGLTHHPHQ---------NLL  494 (508)
T ss_pred             EeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeec--CceeeeeecccccccccccCccc---------chh
Confidence            444222  234567778889998 7777888888766666555  78888899999999999999988         799


Q ss_pred             EEeecCCCeEEEEcC
Q 020107          310 ATCSFYDRLLRIWMP  324 (331)
Q Consensus       310 ~s~~~~d~~i~iW~~  324 (331)
                      |+-+ +||.+++|..
T Consensus       495 AsYs-EDgllKLWkp  508 (508)
T KOG0275|consen  495 ASYS-EDGLLKLWKP  508 (508)
T ss_pred             hhhc-ccchhhhcCC
Confidence            9999 9999999963

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-34  Score=220.89  Aligned_cols=248  Identities=17%  Similarity=0.197  Sum_probs=219.0

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      +.....+|..+|+.+-|+|.    ...+++++.|+++ +||..++++      |...+.+++|+..|+++++++.|-.+.
T Consensus       100 l~~~l~g~r~~vt~v~~hp~----~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPS----EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK  175 (406)
T ss_pred             chhhhhccccceeeeeeccC----ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence            44444678999999999999    8899999999999 999998765      677899999999999999999999999


Q ss_pred             EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107          131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                      +||..+. ..+++.+.+|+..|.+++|-| .++++++++.|.+|+.|++.++-++..+..   |...|..+..+. |+.+
T Consensus       176 LWd~~~~-~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~---h~ewvr~v~v~~-DGti  249 (406)
T KOG0295|consen  176 LWDFDTF-FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPG---HSEWVRMVRVNQ-DGTI  249 (406)
T ss_pred             heeHHHH-HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccC---chHhEEEEEecC-CeeE
Confidence            9999874 456788889999999999999 679999999999999999999999988887   999999999999 9999


Q ss_pred             EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC--------------CCeEEEEEecCcEEEEEEcCcccc
Q 020107          211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI--------------PGLVLAACMHNGFAVVKVGGEKAE  276 (331)
Q Consensus       211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~  276 (331)
                      +++++.|.+|++|-..+. ++... +..|..+|.+++|.|..              ...+.+.+.|+.|++|++..  +.
T Consensus       250 ~As~s~dqtl~vW~~~t~-~~k~~-lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t--g~  325 (406)
T KOG0295|consen  250 IASCSNDQTLRVWVVATK-QCKAE-LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST--GM  325 (406)
T ss_pred             EEecCCCceEEEEEeccc-hhhhh-hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC--Ce
Confidence            999999999999999985 33333 47899999999998732              13566666778889999887  69


Q ss_pred             eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          277 VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       277 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ++.++.+|.+.|.+++|+|.|         ++|+|+. +|++|++||+.+...
T Consensus       326 cL~tL~ghdnwVr~~af~p~G---------kyi~Sca-DDktlrvwdl~~~~c  368 (406)
T KOG0295|consen  326 CLFTLVGHDNWVRGVAFSPGG---------KYILSCA-DDKTLRVWDLKNLQC  368 (406)
T ss_pred             EEEEEecccceeeeeEEcCCC---------eEEEEEe-cCCcEEEEEecccee
Confidence            999999999999999999999         7999999 999999999988753

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-33  Score=206.88  Aligned_cols=286  Identities=14%  Similarity=0.139  Sum_probs=229.9

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      .+.||-..+....++.+|++|.+++          +|..+.||-..+++ .+. .+.+|++.|+++...-+    .+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFsca----------KD~~~~vw~s~nGe-rlG-ty~GHtGavW~~Did~~----s~~li   68 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCA----------KDSTPTVWYSLNGE-RLG-TYDGHTGAVWCCDIDWD----SKHLI   68 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEec----------CCCCceEEEecCCc-eee-eecCCCceEEEEEecCC----cceee
Confidence            3455555555555555559999998          89999999887775 444 45899999999999998    88999


Q ss_pred             EEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEec-----CCeEEEEEcccc-----ceeeeeeeecccc
Q 020107           87 QADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLS-----DGSVSIVSVVES-----QLEVLQQWKAHEF  150 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~-----~~~~~~~~~~~~~  150 (331)
                      +|+.|.++ +||+.+++.     .+.+|..+.|+++|++++....     .+.|.++|++..     ..+|...+..+..
T Consensus        69 TGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s  148 (327)
T KOG0643|consen   69 TGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS  148 (327)
T ss_pred             eccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc
Confidence            99999999 999999887     3788999999999998777654     468999999842     1245677777889


Q ss_pred             eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107          151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      .++.+-|.| -+..|++|..||.|.+||++++.. +.....   |...|+.|.++| +..++++++.|.+-++||.++. 
T Consensus       149 kit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~---h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl-  222 (327)
T KOG0643|consen  149 KITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEE---HSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTL-  222 (327)
T ss_pred             ceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhh---hccccccccccC-CcceEEecccCccceeeeccce-
Confidence            999999999 789999999999999999999853 233333   999999999999 9999999999999999999986 


Q ss_pred             CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc------------cceeEEeecCCcceeeeeecCCC
Q 020107          230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK------------AEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                      ..+..  .....+|++.+++|.. ..++.+|+.+...+-......            .+.+..+++|-++|++++|+|+|
T Consensus       223 ~v~Kt--y~te~PvN~aaisP~~-d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG  299 (327)
T KOG0643|consen  223 EVLKT--YTTERPVNTAAISPLL-DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG  299 (327)
T ss_pred             eeEEE--eeecccccceeccccc-ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence            55555  6678899999999976 444444444432222222211            45677888999999999999999


Q ss_pred             CcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          298 SSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       298 ~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                               ...+||| +||.||+..++..
T Consensus       300 ---------ksYsSGG-EDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  300 ---------KSYSSGG-EDGYVRLHHFDSN  319 (327)
T ss_pred             ---------cccccCC-CCceEEEEEeccc
Confidence                     6999999 9999999877654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-33  Score=208.69  Aligned_cols=240  Identities=22%  Similarity=0.321  Sum_probs=203.8

Q ss_pred             EeEEEEcCCCCCCCCeEEEE--cC-----CccE-EEecCCCcc--------cCccEEEEEEcCCC-CeEEEEecCCeEEE
Q 020107           69 IFDIKWSPVGGNAGPFLAQA--DA-----DGGL-LRDITGEKI--------SSSMCLCLEWNPSA-TSITVGLSDGSVSI  131 (331)
Q Consensus        69 v~~~~~~~~~~~~~~~l~~~--~~-----dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~-~~l~~~~~dg~i~i  131 (331)
                      =.++.|||--++   +||++  ..     .|.+ |-++...+.        -...+..++|+++. +.+++++.||++++
T Consensus        11 GysvqfSPf~~n---rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl   87 (311)
T KOG0277|consen   11 GYSVQFSPFVEN---RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRL   87 (311)
T ss_pred             cceeEecccccc---hhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEE
Confidence            367899997533   44443  32     3444 666642221        25678899999965 45888899999999


Q ss_pred             EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107          132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      ||+... ..|+..++.|..+|.++.|++..+..+++++-|++|++||...++.+..+..   |...|+...|+|..++++
T Consensus        88 ~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g---h~~~Iy~a~~sp~~~nlf  163 (311)
T KOG0277|consen   88 FDLTMP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG---HNSCIYQAAFSPHIPNLF  163 (311)
T ss_pred             eccCCC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC---CccEEEEEecCCCCCCeE
Confidence            996544 3688999999999999999998888899999999999999998888888877   999999999999999999


Q ss_pred             EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeee
Q 020107          212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGA  291 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  291 (331)
                      ++++.|+++++||++...+.+..  ..|...|.++.|+...+.++++++.++.++.|++++. ..++.++.+|.-.|..+
T Consensus       164 as~Sgd~~l~lwdvr~~gk~~~i--~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-r~pl~eL~gh~~AVRkv  240 (311)
T KOG0277|consen  164 ASASGDGTLRLWDVRSPGKFMSI--EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL-RTPLFELNGHGLAVRKV  240 (311)
T ss_pred             EEccCCceEEEEEecCCCceeEE--EeccceeEeecccccCCcEEEecCCCceEEEEehhhc-cccceeecCCceEEEEE
Confidence            99999999999999998776664  8999999999999988788889999999999999998 57788899999999999


Q ss_pred             eecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      +|||...        .+|||++ .|-++||||...+
T Consensus       241 k~Sph~~--------~lLaSas-YDmT~riw~~~~~  267 (311)
T KOG0277|consen  241 KFSPHHA--------SLLASAS-YDMTVRIWDPERQ  267 (311)
T ss_pred             ecCcchh--------hHhhhcc-ccceEEecccccc
Confidence            9999886        8999999 9999999998743

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-34  Score=241.45  Aligned_cols=242  Identities=17%  Similarity=0.253  Sum_probs=212.9

Q ss_pred             eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc
Q 020107           64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE  136 (331)
Q Consensus        64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  136 (331)
                      ..+..|..++|+|.    ..+++++-.+|.| +||.+-+.      .|.++|..+.|+|+..++++|+.|-.|++|+..+
T Consensus         7 skSsRvKglsFHP~----rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPK----RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             cccccccceecCCC----CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            34567999999999    7899999999999 99987654      4899999999999999999999999999999998


Q ss_pred             cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec
Q 020107          137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                      .+  ++.++.+|...|..+.|++ .-..++++|+|.+|+||+..+.+++..+..   |...|.|..|+| ...++++++.
T Consensus        83 rr--clftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltG---HnHYVMcAqFhp-tEDlIVSaSL  155 (1202)
T KOG0292|consen   83 RR--CLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTG---HNHYVMCAQFHP-TEDLIVSASL  155 (1202)
T ss_pred             ce--ehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEec---CceEEEeeccCC-ccceEEEecc
Confidence            75  4889999999999999997 778999999999999999999999999998   999999999999 9999999999


Q ss_pred             CCeEEEEEecCCC---------------------------CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107          217 DEYLRVWDVRSIS---------------------------KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK  269 (331)
Q Consensus       217 d~~i~iwd~~~~~---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (331)
                      |.+||+||+...+                           ..+...+.+|...|+-++|+|.- .++++++.|..+++|+
T Consensus       156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWr  234 (1202)
T KOG0292|consen  156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWR  234 (1202)
T ss_pred             cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEE
Confidence            9999999996421                           11233456899999999999985 5556666666778888


Q ss_pred             EcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          270 VGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       270 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      +.....-.+.+.++|.+.|.++-|+|..         .+++|.| +|++|++||++..
T Consensus       235 mnetKaWEvDtcrgH~nnVssvlfhp~q---------~lIlSns-EDksirVwDm~kR  282 (1202)
T KOG0292|consen  235 MNETKAWEVDTCRGHYNNVSSVLFHPHQ---------DLILSNS-EDKSIRVWDMTKR  282 (1202)
T ss_pred             eccccceeehhhhcccCCcceEEecCcc---------ceeEecC-CCccEEEEecccc
Confidence            8877666788889999999999999987         6999999 9999999999753

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-33  Score=228.35  Aligned_cols=273  Identities=14%  Similarity=0.251  Sum_probs=228.2

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+.+|.++|..|   .+.++-|          +|.|.||+.+++.  +...+.-..-+|++..|-+.    .+++++|+
T Consensus        14 dRVKsVd~HPteP---w~la~Ly----------nG~V~IWnyetqt--mVksfeV~~~PvRa~kfiaR----knWiv~Gs   74 (794)
T KOG0276|consen   14 DRVKSVDFHPTEP---WILAALY----------NGDVQIWNYETQT--MVKSFEVSEVPVRAAKFIAR----KNWIVTGS   74 (794)
T ss_pred             CceeeeecCCCCc---eEEEeee----------cCeeEEEecccce--eeeeeeecccchhhheeeec----cceEEEec
Confidence            3577888888885   7777764          9999999999986  44444566788999999999    88999999


Q ss_pred             CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      .|+.| +++..+.+.      |...|.+++.+|..+++++++.|-.|++||.+. .+.+.+++.+|..-|.+++|+|.+.
T Consensus        75 DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD~  153 (794)
T KOG0276|consen   75 DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKDP  153 (794)
T ss_pred             CCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCCc
Confidence            99999 998887643      789999999999999999999999999999974 5678899999999999999999999


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC-CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS-DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG  241 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  241 (331)
                      +.+++++-|++|++|.+.+..+...+..   |...|+|+.+-+- +..+|++|+.|.+|++||.++ +.++.+ +.+|..
T Consensus       154 ntFaS~sLDrTVKVWslgs~~~nfTl~g---HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~CV~T-LeGHt~  228 (794)
T KOG0276|consen  154 NTFASASLDRTVKVWSLGSPHPNFTLEG---HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KSCVQT-LEGHTN  228 (794)
T ss_pred             cceeeeeccccEEEEEcCCCCCceeeec---cccCcceEEeccCCCcceEEecCCCceEEEeecch-HHHHHH-hhcccc
Confidence            9999999999999999998877777776   9999999999872 335999999999999999998 466666 689999


Q ss_pred             ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107          242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR  320 (331)
Q Consensus       242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~  320 (331)
                      .|..+.|+|.- ..+++++.|+.+++|+-..  -++..++.-.-+.|++++-.+.+         +.++.|. +.|.|.
T Consensus       229 Nvs~v~fhp~l-piiisgsEDGTvriWhs~T--y~lE~tLn~gleRvW~I~~~k~~---------~~i~vG~-Deg~i~  294 (794)
T KOG0276|consen  229 NVSFVFFHPEL-PIIISGSEDGTVRIWNSKT--YKLEKTLNYGLERVWCIAAHKGD---------GKIAVGF-DEGSVT  294 (794)
T ss_pred             cceEEEecCCC-cEEEEecCCccEEEecCcc--eehhhhhhcCCceEEEEeecCCC---------CeEEEec-cCCcEE
Confidence            99999999985 5566666677777776554  34455555556789999988877         5677776 555553

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.8e-32  Score=235.32  Aligned_cols=240  Identities=23%  Similarity=0.370  Sum_probs=202.9

Q ss_pred             ecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107           65 DTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  135 (331)
                      +...|.++.|+|+    +..+++++.++.+ +|+.....        .|...|.+++|+|+++++++++.|++|++||++
T Consensus       158 ~~~sv~~~~fs~~----g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  158 ECPSVTCVDFSPD----GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             ccCceEEEEEcCC----CCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            3678999999999    8999999999999 88874333        378889999999999999999999999999994


Q ss_pred             ccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107          136 ESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      ... ..++.+++|...|++++|+| .++++++|+.|++|++||++++++...+..   |...|++++|++ ++++|++++
T Consensus       234 ~~~-~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~---hs~~is~~~f~~-d~~~l~s~s  307 (456)
T KOG0266|consen  234 DDG-RNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKG---HSDGISGLAFSP-DGNLLVSAS  307 (456)
T ss_pred             CCC-eEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeec---cCCceEEEEECC-CCCEEEEcC
Confidence            432 45888999999999999999 559999999999999999999988888887   999999999999 999999999


Q ss_pred             cCCeEEEEEecCCCC-CceeeeeecCC--ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce---e
Q 020107          216 YDEYLRVWDVRSISK-PVNETSVCLGG--GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA---Y  289 (331)
Q Consensus       216 ~d~~i~iwd~~~~~~-~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---~  289 (331)
                      .|+.|++||+.++.. ++.. +..+..  ++++++|+|++ .+++++..++.+++|++..  +..+..+.+|...+   .
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~--~~~~~~~~~~~~~~~~~~  383 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKL-LSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRS--GKSVGTYTGHSNLVRCIF  383 (456)
T ss_pred             CCccEEEEECCCCceeeeec-ccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccC--CcceeeecccCCcceeEe
Confidence            999999999998642 2222 233333  59999999997 6777777777899999987  57888888887753   3


Q ss_pred             eeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +...++.+         .++++++ .|+.|++|++.++.
T Consensus       384 ~~~~~~~~---------~~i~sg~-~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  384 SPTLSTGG---------KLIYSGS-EDGSVYVWDSSSGG  412 (456)
T ss_pred             cccccCCC---------CeEEEEe-CCceEEEEeCCccc
Confidence            33445555         7999999 99999999998753

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.7e-32  Score=250.75  Aligned_cols=261  Identities=17%  Similarity=0.254  Sum_probs=214.5

Q ss_pred             CCcEEEEeccCcccceEEe----EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-------------cc
Q 020107           43 NGSISLFNVNAEEKNLELL----YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-------------IS  104 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-------------~~  104 (331)
                      +|.+++|+...... ....    ...|...|.+++|+|+    +++|++|+.|+.+ +|+.....             .+
T Consensus       457 ~gl~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~i~fs~d----g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~  531 (793)
T PLN00181        457 EGLCKYLSFSKLRV-KADLKQGDLLNSSNLVCAIGFDRD----GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS  531 (793)
T ss_pred             hhhhhhhcccceEE-EEeeccccccCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEECCcccccccccccceEEecc
Confidence            56788888776431 1111    1237888999999999    8999999999999 99975311             12


Q ss_pred             CccEEEEEEcCC-CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107          105 SSMCLCLEWNPS-ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP  183 (331)
Q Consensus       105 ~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  183 (331)
                      ...+.+++|++. +.+|++++.||+|++||+.+++.  +..+.+|...|++++|+|.++.+|++|+.|+.|++||++++.
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~  609 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV  609 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence            456789999874 67899999999999999987743  777889999999999998678899999999999999999887


Q ss_pred             ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107          184 FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN  263 (331)
Q Consensus       184 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  263 (331)
                      ....+..    ...+.++.|++.++.+|++|+.|+.|++||+++...++.. ...|...|..+.|.+.  ..+++++.|+
T Consensus       610 ~~~~~~~----~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~-~~~h~~~V~~v~f~~~--~~lvs~s~D~  682 (793)
T PLN00181        610 SIGTIKT----KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT-MIGHSKTVSYVRFVDS--STLVSSSTDN  682 (793)
T ss_pred             EEEEEec----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE-ecCCCCCEEEEEEeCC--CEEEEEECCC
Confidence            7666654    4679999997657999999999999999999986444444 4689999999999854  7788888999


Q ss_pred             cEEEEEEcCc----ccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          264 GFAVVKVGGE----KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       264 ~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .+++|++...    ....+.++.+|...+..+.|+|++         .+|++|+ .|+.|++|+....
T Consensus       683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~---------~~lasgs-~D~~v~iw~~~~~  740 (793)
T PLN00181        683 TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD---------GYIATGS-ETNEVFVYHKAFP  740 (793)
T ss_pred             EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC---------CEEEEEe-CCCEEEEEECCCC
Confidence            9999998742    245678899999999999999998         6999999 9999999997543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-33  Score=230.58  Aligned_cols=243  Identities=17%  Similarity=0.222  Sum_probs=211.3

Q ss_pred             eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107           63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  135 (331)
                      ..+...|.++.|+|.    ..+++++-.+|.+ ||+.++...      ...+|.+..|-+..+.+++|+.|..|++|+..
T Consensus        10 ~~rSdRVKsVd~HPt----ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPT----EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             hccCCceeeeecCCC----CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            347788999999999    8899999999999 999988654      46788888999999999999999999999999


Q ss_pred             ccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-CceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107          136 ESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      +.+.  +..|..|..-|++++.+| ...+++++++|-.|++||.... .+.+.+..   |...|.+++|+|.|.+.++++
T Consensus        86 t~ek--V~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeG---H~HyVMqv~fnPkD~ntFaS~  159 (794)
T KOG0276|consen   86 TGEK--VKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEG---HEHYVMQVAFNPKDPNTFASA  159 (794)
T ss_pred             ccee--eEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcC---cceEEEEEEecCCCccceeee
Confidence            8754  899999999999999999 6688999999999999999865 34555655   999999999999999999999


Q ss_pred             ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCC-eEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeee
Q 020107          215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPG-LVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADW  293 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  293 (331)
                      +.|++|++|.+.+. .|..+ +.+|...|+++.+-+.++. ++++++.|..+++|+...  ..+++++.||...|..+.|
T Consensus       160 sLDrTVKVWslgs~-~~nfT-l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt--k~CV~TLeGHt~Nvs~v~f  235 (794)
T KOG0276|consen  160 SLDRTVKVWSLGSP-HPNFT-LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT--KSCVQTLEGHTNNVSFVFF  235 (794)
T ss_pred             eccccEEEEEcCCC-CCcee-eeccccCcceEEeccCCCcceEEecCCCceEEEeecch--HHHHHHhhcccccceEEEe
Confidence            99999999999985 55555 5799999999999987644 555555556677777776  5899999999999999999


Q ss_pred             cCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          294 QRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       294 ~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +|.-|         +++||| +||++|||+-.+-.+
T Consensus       236 hp~lp---------iiisgs-EDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  236 HPELP---------IIISGS-EDGTVRIWNSKTYKL  261 (794)
T ss_pred             cCCCc---------EEEEec-CCccEEEecCcceeh
Confidence            99995         999999 999999999876543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-32  Score=201.36  Aligned_cols=243  Identities=16%  Similarity=0.246  Sum_probs=203.5

Q ss_pred             eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEE
Q 020107           61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVS  133 (331)
Q Consensus        61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  133 (331)
                      +...++++|.++.|+-+    +++.++++.|.++ +|+...+.+      |...|..++.+.|+..+++++.|..+.+||
T Consensus        12 ~l~~~qgaV~avryN~d----GnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVD----GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             eecccccceEEEEEccC----CCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            34778999999999999    9999999999999 999876654      788899999999999999999999999999


Q ss_pred             ccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107          134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT  213 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  213 (331)
                      +++++.  .+.+.+|...|+.++|+. +...+++|+.|..+++||.|+....++. ......+.|.++...   +..+++
T Consensus        88 V~TGkv--~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQ-ildea~D~V~Si~v~---~heIva  160 (307)
T KOG0316|consen   88 VNTGKV--DRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQ-ILDEAKDGVSSIDVA---EHEIVA  160 (307)
T ss_pred             cccCee--eeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccc-hhhhhcCceeEEEec---ccEEEe
Confidence            999976  899999999999999996 8899999999999999999976543322 223367889999985   578999


Q ss_pred             EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeee
Q 020107          214 GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADW  293 (331)
Q Consensus       214 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  293 (331)
                      |+.||++|.||+|.+ + +..  .....+|+++.|++++ +..++++.+..+++++-.  +++++..+++|...-+.+..
T Consensus       161 GS~DGtvRtydiR~G-~-l~s--Dy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~--tGklL~sYkGhkn~eykldc  233 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKG-T-LSS--DYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKE--TGKLLKSYKGHKNMEYKLDC  233 (307)
T ss_pred             eccCCcEEEEEeecc-e-eeh--hhcCCcceeEEecCCC-CEEEEeeccceeeecccc--hhHHHHHhcccccceeeeee
Confidence            999999999999986 2 222  5677899999999998 788888898886666544  48999999999887666554


Q ss_pred             cCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          294 QRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       294 ~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +-...       ...+++|+ +||.|++||+.+..+
T Consensus       234 ~l~qs-------dthV~sgS-EDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  234 CLNQS-------DTHVFSGS-EDGKVYFWDLVDETQ  261 (307)
T ss_pred             eeccc-------ceeEEecc-CCceEEEEEecccee
Confidence            43321       16899999 999999999987643

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-32  Score=233.74  Aligned_cols=279  Identities=15%  Similarity=0.206  Sum_probs=234.3

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+..++|+|..|   .+.++-          -+|.|++||..-+.  +..-+..|.++|..+.|+|.    +.++++|+
T Consensus        10 sRvKglsFHP~rP---wILtsl----------HsG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~----qplFVSGG   70 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRP---WILTSL----------HSGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPT----QPLFVSGG   70 (1202)
T ss_pred             ccccceecCCCCC---EEEEee----------cCceeeeehhhhhh--HHhhhhccCCccceeeecCC----CCeEEecC
Confidence            3567788888884   788876          59999999998775  33344789999999999999    88999999


Q ss_pred             CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      .|-+| +|+..+.++      |-..|..+.|++.-+.|++++.|.+|+||+..+.+.  +..+.+|...|.|..|+| ..
T Consensus        71 DDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~--iavltGHnHYVMcAqFhp-tE  147 (1202)
T KOG0292|consen   71 DDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC--IAVLTGHNHYVMCAQFHP-TE  147 (1202)
T ss_pred             CccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce--EEEEecCceEEEeeccCC-cc
Confidence            99999 999998776      788999999999999999999999999999998754  888999999999999999 78


Q ss_pred             cEEEEEcCCCeEEEEEccCCCce---e---------------ee--------ecccCCCcceEEEEEecCCCCEEEEEec
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFK---L---------------AF--------QNSKIHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~---~---------------~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                      .+++++|-|.+||+||+..-+..   +               .+        ....+|...|+-++|+| .-.++++|+.
T Consensus       148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~D  226 (1202)
T KOG0292|consen  148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGAD  226 (1202)
T ss_pred             ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCC
Confidence            99999999999999999632110   0               00        11246999999999999 8889999999


Q ss_pred             CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107          217 DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRG  296 (331)
Q Consensus       217 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  296 (331)
                      |..|++|.+...+.--.....+|...|.++-|+|.. .++++.+.|..+++|++...  ..+++++...+.-+.++-+|.
T Consensus       227 DRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kR--t~v~tfrrendRFW~laahP~  303 (1202)
T KOG0292|consen  227 DRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKR--TSVQTFRRENDRFWILAAHPE  303 (1202)
T ss_pred             cceeeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccc--cceeeeeccCCeEEEEEecCC
Confidence            999999999764322222357899999999999986 78889999999999999884  778888877788999999999


Q ss_pred             CCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          297 RSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      .         ++++.|-  |+-+.++.++
T Consensus       304 l---------NLfAAgH--DsGm~VFkle  321 (1202)
T KOG0292|consen  304 L---------NLFAAGH--DSGMIVFKLE  321 (1202)
T ss_pred             c---------ceeeeec--CCceEEEEEc
Confidence            8         5777664  8878888776

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.5e-32  Score=227.02  Aligned_cols=282  Identities=17%  Similarity=0.232  Sum_probs=231.6

Q ss_pred             eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107            6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      +...||-..|.-...+.+...+++|+           ++.|++|+.++.+ .++.+   ..+-+.+..|.|.    +.++
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-----------~~SikiWn~~t~k-ciRTi---~~~y~l~~~Fvpg----d~~I  427 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-----------GESIKIWNRDTLK-CIRTI---TCGYILASKFVPG----DRYI  427 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-----------CCcEEEEEccCcc-eeEEe---ccccEEEEEecCC----CceE
Confidence            44556554444433333337888886           9999999999875 45544   3357999999999    8999


Q ss_pred             EEEcCCccE-EEecCCC------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc-----ceeee------eeeec
Q 020107           86 AQADADGGL-LRDITGE------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES-----QLEVL------QQWKA  147 (331)
Q Consensus        86 ~~~~~dg~i-iw~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~------~~~~~  147 (331)
                      ++|..+|.+ ++++...      +.|.+.+.+++..||++.+++|+.|.+|++||..-.     ....+      +.+. 
T Consensus       428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-  506 (888)
T KOG0306|consen  428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-  506 (888)
T ss_pred             EEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-
Confidence            999999999 8887664      348999999999999999999999999999997531     10011      1222 


Q ss_pred             ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      -+..|.|+.++| ++.+|+++--|.++++|-+.+-+....+.+   |.-+|.||.++| ++++++||+.|.+|++|-++-
T Consensus       507 l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYG---HkLPV~smDIS~-DSklivTgSADKnVKiWGLdF  581 (888)
T KOG0306|consen  507 LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYG---HKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF  581 (888)
T ss_pred             ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecc---cccceeEEeccC-CcCeEEeccCCCceEEecccc
Confidence            356799999999 889999999999999999998775555555   999999999999 999999999999999999987


Q ss_pred             CCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCc
Q 020107          228 ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNS  307 (331)
Q Consensus       228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  307 (331)
                      + .+... +.+|...|+++.|.|.. ..+.++|.++.++.|+-.+  .+.++.+.+|...|++++.+|+|         .
T Consensus       582 G-DCHKS-~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~G---------~  647 (888)
T KOG0306|consen  582 G-DCHKS-FFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPNG---------S  647 (888)
T ss_pred             c-hhhhh-hhcccCceeEEEEcccc-eeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcCCC---------C
Confidence            6 44444 58999999999999975 7788888888888887666  58899999999999999999999         7


Q ss_pred             EEEEeecCCCeEEEEcCCCc
Q 020107          308 LVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       308 ~l~s~~~~d~~i~iW~~~~~  327 (331)
                      +++|+| .|.+|++|.....
T Consensus       648 ~vvs~s-hD~sIRlwE~tde  666 (888)
T KOG0306|consen  648 FVVSSS-HDKSIRLWERTDE  666 (888)
T ss_pred             eEEecc-CCceeEeeeccCc
Confidence            999999 9999999997664

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.5e-32  Score=197.26  Aligned_cols=273  Identities=15%  Similarity=0.155  Sum_probs=223.4

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ++++..++|.-++   +|.++++          .|.+|++|+...+.  +...+.+|...|.+++.+.+    ...|++|
T Consensus        17 qgaV~avryN~dG---nY~ltcG----------sdrtvrLWNp~rg~--liktYsghG~EVlD~~~s~D----nskf~s~   77 (307)
T KOG0316|consen   17 QGAVRAVRYNVDG---NYCLTCG----------SDRTVRLWNPLRGA--LIKTYSGHGHEVLDAALSSD----NSKFASC   77 (307)
T ss_pred             ccceEEEEEccCC---CEEEEcC----------CCceEEeecccccc--eeeeecCCCceeeecccccc----ccccccC
Confidence            5677788887776   7766665          69999999998885  66677999999999999999    7899999


Q ss_pred             cCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107           89 DADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (331)
                      +.|..+ +||+.+++.      |...|+.++|+.+...+++|+.|.++++||.++...+|++.+......|.++..+.  
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--  155 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--  155 (307)
T ss_pred             CCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--
Confidence            999999 999999875      78999999999999999999999999999999999999999988888999999864  


Q ss_pred             CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107          162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG  241 (331)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  241 (331)
                       +.|++|+.||+++.||+|.++...-+     -..+|++++|++ +++..+.++.|+++++.|-.++ +.+.. ..+|..
T Consensus       156 -heIvaGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tG-klL~s-YkGhkn  226 (307)
T KOG0316|consen  156 -HEIVAGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETG-KLLKS-YKGHKN  226 (307)
T ss_pred             -cEEEeeccCCcEEEEEeecceeehhh-----cCCcceeEEecC-CCCEEEEeeccceeeecccchh-HHHHH-hccccc
Confidence             78999999999999999998743332     367899999999 9999999999999999999986 44443 467766


Q ss_pred             ceEEE--EECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcc-eeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107          242 GVWRI--KHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL-AYGADWQRGRSSLEGKRKNSLVATCSFYDRL  318 (331)
Q Consensus       242 ~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~  318 (331)
                      .=+.+  +++... ..++.++.|+.+.+|++-+  ...+..+..|... |.+++++|..+         -++++.  ++.
T Consensus       227 ~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd--~~~~sk~~~~~~v~v~dl~~hp~~~---------~f~~A~--~~~  292 (307)
T KOG0316|consen  227 MEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVD--ETQISKLSVVSTVIVTDLSCHPTMD---------DFITAT--GHG  292 (307)
T ss_pred             ceeeeeeeecccc-eeEEeccCCceEEEEEecc--ceeeeeeccCCceeEEeeecccCcc---------ceeEec--CCc
Confidence            55444  344432 4555555667778888887  4677777777766 89999999985         455554  667


Q ss_pred             EEEEcCC
Q 020107          319 LRIWMPE  325 (331)
Q Consensus       319 i~iW~~~  325 (331)
                      +.+|.-+
T Consensus       293 ~~~~~~~  299 (307)
T KOG0316|consen  293 DLFWYQE  299 (307)
T ss_pred             eeceeeh
Confidence            7777644

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=1.6e-31  Score=211.05  Aligned_cols=275  Identities=16%  Similarity=0.197  Sum_probs=227.6

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD   91 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   91 (331)
                      +.++.-+|..   +.+++|+          .|..+.++|...++  +..++++|...|+.+.|+|+    ...+++++.|
T Consensus       222 i~ald~~~s~---~~ilTGG----------~d~~av~~d~~s~q--~l~~~~Gh~kki~~v~~~~~----~~~v~~aSad  282 (506)
T KOG0289|consen  222 ITALDIIPSS---SKILTGG----------EDKTAVLFDKPSNQ--ILATLKGHTKKITSVKFHKD----LDTVITASAD  282 (506)
T ss_pred             eeEEeecCCC---CcceecC----------CCCceEEEecchhh--hhhhccCcceEEEEEEeccc----hhheeecCCc
Confidence            4455555553   6888887          79899999999886  66677999999999999999    8899999999


Q ss_pred             ccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE
Q 020107           92 GGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM  164 (331)
Q Consensus        92 g~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (331)
                      ..+ +|......      +|..+|+.+..+|.|++|++++.||+..+.|++++.......-+..+-.+++.+|+| ++.+
T Consensus       283 ~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLi  361 (506)
T KOG0289|consen  283 EIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLI  361 (506)
T ss_pred             ceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceE
Confidence            999 99886643      478999999999999999999999999999999987533333333446699999999 8999


Q ss_pred             EEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceE
Q 020107          165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVW  244 (331)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  244 (331)
                      |.+|..|+.|+|||+.++.....|..   |.++|..|+|+. +|.+|++++.|+.|++||+|.. +.+..+......++.
T Consensus       362 fgtgt~d~~vkiwdlks~~~~a~Fpg---ht~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~v~  436 (506)
T KOG0289|consen  362 FGTGTPDGVVKIWDLKSQTNVAKFPG---HTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKEVN  436 (506)
T ss_pred             EeccCCCceEEEEEcCCccccccCCC---CCCceeEEEecc-CceEEEEEecCCeEEEEEehhh-cccceeeccccccce
Confidence            99999999999999998876666665   999999999999 9999999999999999999986 445543445555899


Q ss_pred             EEEECCCCCCeEEEEEecCcEEEEEEc--CcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107          245 RIKHHPFIPGLVLAACMHNGFAVVKVG--GEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW  322 (331)
                      ++.|.+.| .+++++|.+  ++++...  ..+...+..+..|.+..+.+.|....         ++++++| .|..++++
T Consensus       437 s~~fD~SG-t~L~~~g~~--l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a---------q~l~s~s-md~~l~~~  503 (506)
T KOG0289|consen  437 SLSFDQSG-TYLGIAGSD--LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA---------QYLASTS-MDAILRLY  503 (506)
T ss_pred             eEEEcCCC-CeEEeecce--eEEEEEecccccceeeehhhhcccccceeeecccc---------eEEeecc-chhheEEe
Confidence            99999997 555555444  4455544  33467788888899999999999988         7999999 99999988


Q ss_pred             cC
Q 020107          323 MP  324 (331)
Q Consensus       323 ~~  324 (331)
                      .+
T Consensus       504 a~  505 (506)
T KOG0289|consen  504 AL  505 (506)
T ss_pred             ec
Confidence            64

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.1e-32  Score=230.79  Aligned_cols=240  Identities=18%  Similarity=0.311  Sum_probs=197.2

Q ss_pred             eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC-------------------------------cc-----
Q 020107           61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE-------------------------------KI-----  103 (331)
Q Consensus        61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~-------------------------------~~-----  103 (331)
                      +...|.++|++|.||++    |++||+|+.|+.| ||.+...                               ..     
T Consensus       262 ~~~ah~gaIw~mKFS~D----GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHD----GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             cccccCCcEEEEEeCCC----CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            33379999999999999    9999999999999 9987550                               00     


Q ss_pred             ------------------------------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeE
Q 020107          104 ------------------------------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW  153 (331)
Q Consensus       104 ------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~  153 (331)
                                                    |...|.+|+|+.+ ++|++++-|.+|++|++...  .++..|. |..-|+
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~--~CL~~F~-HndfVT  413 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK--ECLKVFS-HNDFVT  413 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc--ceeeEEe-cCCeeE
Confidence                                          4566889999854 68999999999999999865  4577776 999999


Q ss_pred             EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCce
Q 020107          154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVN  233 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  233 (331)
                      |++|+|.+.++|++|+-||.||||++...+.. .+..   -..-|++++|.| +|+..++|+.+|.+++|+.+..+ ...
T Consensus       414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~D---l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk-~~~  487 (712)
T KOG0283|consen  414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-DWND---LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLK-LVS  487 (712)
T ss_pred             EEEecccCCCcEeecccccceEEeecCcCeeE-eehh---hhhhheeEEecc-CCceEEEEEeccEEEEEEccCCe-EEE
Confidence            99999999999999999999999999976643 3433   358899999999 89999999999999999998753 222


Q ss_pred             ee-eeec------CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc--ceeeeeecCCCCcccccc
Q 020107          234 ET-SVCL------GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS--LAYGADWQRGRSSLEGKR  304 (331)
Q Consensus       234 ~~-~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~  304 (331)
                      .. ...+      ...|+.++|.|.....+++++.|..|+|++..+.  .++..|+|+..  .-....|+.++       
T Consensus       488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~--~lv~KfKG~~n~~SQ~~Asfs~Dg-------  558 (712)
T KOG0283|consen  488 DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK--DLVHKFKGFRNTSSQISASFSSDG-------  558 (712)
T ss_pred             eeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch--hhhhhhcccccCCcceeeeEccCC-------
Confidence            21 1111      2379999999987777999999999999999774  67777776433  44578899988       


Q ss_pred             cCcEEEEeecCCCeEEEEcCCC
Q 020107          305 KNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       305 ~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                        ++|++++ +|..|++|+.+.
T Consensus       559 --k~IVs~s-eDs~VYiW~~~~  577 (712)
T KOG0283|consen  559 --KHIVSAS-EDSWVYIWKNDS  577 (712)
T ss_pred             --CEEEEee-cCceEEEEeCCC
Confidence              7999999 999999999854

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-31  Score=212.60  Aligned_cols=274  Identities=14%  Similarity=0.205  Sum_probs=227.9

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ...+.++.|+|.+|  .-+|+.+           .-.+.||+..+.. ..+.+ ......|.++.|-.|    |++||+|
T Consensus        26 ~~~vssl~fsp~~P--~d~aVt~-----------S~rvqly~~~~~~-~~k~~-srFk~~v~s~~fR~D----G~LlaaG   86 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHP--YDFAVTS-----------SVRVQLYSSVTRS-VRKTF-SRFKDVVYSVDFRSD----GRLLAAG   86 (487)
T ss_pred             cCcceeEecCCCCC--CceEEec-----------ccEEEEEecchhh-hhhhH-HhhccceeEEEeecC----CeEEEcc
Confidence            35788999999998  4466665           5689999988875 33333 445678999999999    9999999


Q ss_pred             cCCccE-EEecCCC------cccCccEEEEEEcCCCCe-EEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           89 DADGGL-LRDITGE------KISSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        89 ~~dg~i-iw~~~~~------~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      ...|.+ ++|..+.      ..|..++..+.|+|+++. +++|+.|+.+++||+.+...  ...+.+|+..|.+.+|+|.
T Consensus        87 D~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~  164 (487)
T KOG0310|consen   87 DESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPA  164 (487)
T ss_pred             CCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccC
Confidence            999999 9996552      348899999999997665 77788899999999998753  6678899999999999998


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCC-ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESP-FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL  239 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  239 (331)
                      +++++++|+.||.|++||++... .+..+.    |..+|..+.+-| .+..+++++. ..|++||+-++.+.+.. ...|
T Consensus       165 ~~hivvtGsYDg~vrl~DtR~~~~~v~eln----hg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~~-~~~H  237 (487)
T KOG0310|consen  165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELN----HGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLTS-MFNH  237 (487)
T ss_pred             CCeEEEecCCCceEEEEEeccCCceeEEec----CCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehhh-hhcc
Confidence            88999999999999999999874 233333    899999999999 8899999874 67999999987666665 3559


Q ss_pred             CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107          240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL  319 (331)
Q Consensus       240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i  319 (331)
                      ...|+|+++..++ ..|++++-|+.++++++.+  .+.+..+.- .++|.+++.+|++         +.++.|. .||.+
T Consensus       238 ~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~--~Kvv~s~~~-~~pvLsiavs~dd---------~t~viGm-snGlv  303 (487)
T KOG0310|consen  238 NKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTN--YKVVHSWKY-PGPVLSIAVSPDD---------QTVVIGM-SNGLV  303 (487)
T ss_pred             cceEEEEEeecCC-ceEeecccccceEEEEccc--eEEEEeeec-ccceeeEEecCCC---------ceEEEec-cccee
Confidence            9999999999987 8899999999999999776  477777764 6899999999998         6888888 89988


Q ss_pred             EEEcC
Q 020107          320 RIWMP  324 (331)
Q Consensus       320 ~iW~~  324 (331)
                      .+=+.
T Consensus       304 ~~rr~  308 (487)
T KOG0310|consen  304 SIRRR  308 (487)
T ss_pred             eeehh
Confidence            76544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=4.9e-32  Score=218.34  Aligned_cols=288  Identities=16%  Similarity=0.223  Sum_probs=216.1

Q ss_pred             eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCCCC
Q 020107            5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGGNA   81 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~   81 (331)
                      .+.+.++...|.-....|.|..|++|+          -|-.|++||+......   ++.+.......|++++|++.    
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs----------~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T----  225 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGS----------LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT----  225 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeecc----------ccceEEEEecccccccchhhhccCcccccccceeeecCC----
Confidence            356677778888888888889999999          5999999999876533   44444445667999999999    


Q ss_pred             CCeEEEEcCCccE-------------------EEecCCCcccCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceee
Q 020107           82 GPFLAQADADGGL-------------------LRDITGEKISSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEV  141 (331)
Q Consensus        82 ~~~l~~~~~dg~i-------------------iw~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  141 (331)
                      +..|++.+.....                   |-|+...+.|...++|.+|+|..+ .+++++.||++++||+...+. .
T Consensus       226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-q  304 (641)
T KOG0772|consen  226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-Q  304 (641)
T ss_pred             CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-h
Confidence            6666665554444                   334444555788899999999765 589999999999999987442 2


Q ss_pred             eeeee-----cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc--ceEEEEEecCCCCEEEEE
Q 020107          142 LQQWK-----AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM--GVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       142 ~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~  214 (331)
                      ...++     +..-+++.++|+| ++++|++|..||.|.+||.+.......+....+|..  .|+||.|++ ++++|++-
T Consensus       305 ~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSR  382 (641)
T KOG0772|consen  305 LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSR  382 (641)
T ss_pred             eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhc
Confidence            22222     3446789999999 889999999999999999977666666666567887  899999999 99999999


Q ss_pred             ecCCeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCeEEEEEe------cCcEEEEEEcCcccceeEEeecCCcc
Q 020107          215 SYDEYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGLVLAACM------HNGFAVVKVGGEKAEVLETYAKHGSL  287 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~h~~~  287 (331)
                      +.|+++++||+++.++++.... .....+-+.++|+|+. .+++++.+      .+.+.+++  ......++.+.-.+..
T Consensus       383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d--~~t~d~v~ki~i~~aS  459 (641)
T KOG0772|consen  383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFD--RMTLDTVYKIDISTAS  459 (641)
T ss_pred             cCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEe--ccceeeEEEecCCCce
Confidence            9999999999999988887621 1223456789999995 44444432      22333343  3335677777766889


Q ss_pred             eeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107          288 AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       288 v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW  322 (331)
                      |..+.|+|.-.        ++++++  .||.++++
T Consensus       460 vv~~~WhpkLN--------Qi~~gs--gdG~~~vy  484 (641)
T KOG0772|consen  460 VVRCLWHPKLN--------QIFAGS--GDGTAHVY  484 (641)
T ss_pred             EEEEeecchhh--------heeeec--CCCceEEE
Confidence            99999999884        445544  48988875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.2e-33  Score=215.98  Aligned_cols=230  Identities=16%  Similarity=0.238  Sum_probs=198.3

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ  138 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  138 (331)
                      ..+|+|+.+..+      .+++|..|.++ +||.....+      |.+.|.|+.|.  .+.+++|+.|.+|++||.++++
T Consensus       197 skgVYClQYDD~------kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  197 SKGVYCLQYDDE------KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             CCceEEEEecch------hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence            457999998665      99999999999 999987654      78999999995  4689999999999999999985


Q ss_pred             eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC
Q 020107          139 LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE  218 (331)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  218 (331)
                      +  +.++-+|...|..+.|+.   .++++++.|.++.+||+..+..+.......+|...|+.+.|+   .+++++++.|.
T Consensus       269 ~--l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDR  340 (499)
T KOG0281|consen  269 P--LNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDR  340 (499)
T ss_pred             h--hhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCc
Confidence            4  888889999999999974   799999999999999999877554444445599999999995   57999999999


Q ss_pred             eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107          219 YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  298 (331)
                      +|++|++.+. ..+.. +.+|...|-++++..   .+++++++|+.|++|++..  +.++..+.||+.-|.++.|...  
T Consensus       341 TikvW~~st~-efvRt-l~gHkRGIAClQYr~---rlvVSGSSDntIRlwdi~~--G~cLRvLeGHEeLvRciRFd~k--  411 (499)
T KOG0281|consen  341 TIKVWSTSTC-EFVRT-LNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC--GACLRVLEGHEELVRCIRFDNK--  411 (499)
T ss_pred             eEEEEeccce-eeehh-hhcccccceehhccC---eEEEecCCCceEEEEeccc--cHHHHHHhchHHhhhheeecCc--
Confidence            9999999986 33333 589999999988764   6777777899999999988  7999999999999999999764  


Q ss_pred             cccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107          299 SLEGKRKNSLVATCSFYDRLLRIWMPESDCLT  330 (331)
Q Consensus       299 ~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~  330 (331)
                               .+++|+ +||+|++||+..++..
T Consensus       412 ---------rIVSGa-YDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  412 ---------RIVSGA-YDGKIKVWDLQAALDP  433 (499)
T ss_pred             ---------eeeecc-ccceEEEEecccccCC
Confidence                     799999 9999999999887654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.3e-33  Score=214.28  Aligned_cols=281  Identities=14%  Similarity=0.197  Sum_probs=232.2

Q ss_pred             eecCcceeEeeecCCCCC-cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107            7 ELDGNADAVEFCPQDSYH-HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~-~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      .|.||...|.+...+|.. ..+|+|+          .||.|+|||+....  ....+..|.+.|..|++...      .+
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs----------~DG~VkiWnlsqR~--~~~~f~AH~G~V~Gi~v~~~------~~  122 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGS----------CDGEVKIWNLSQRE--CIRTFKAHEGLVRGICVTQT------SF  122 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccc----------cCceEEEEehhhhh--hhheeecccCceeeEEeccc------ce
Confidence            467888888877777654 5789998          69999999999876  44455889999999999875      79


Q ss_pred             EEEcCCccE-EEecCCCccc----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           86 AQADADGGL-LRDITGEKIS----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        86 ~~~~~dg~i-iw~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      ++++.|.++ .|.+.....+    .+.+..+.-+..+..+++++.  .|.|||....  .|+..+.-....|.++.|+|.
T Consensus       123 ~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~--~Pv~smswG~Dti~svkfNpv  198 (433)
T KOG0268|consen  123 FTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD--NPVSSMSWGADSISSVKFNPV  198 (433)
T ss_pred             EEecCCcceeeeeccCCcceeeeccccccccccccccccccccCc--eeeecccccC--CccceeecCCCceeEEecCCC
Confidence            999999999 9987765332    455666666666777888776  6889998765  457777777788999999998


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      ....|++|..|+.|.+||+|+...+..+..    ...-+.|+|+| ....|+++.+|..+..||++....|+.. ...|.
T Consensus       199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~----~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v-~~dhv  272 (433)
T KOG0268|consen  199 ETSILASCASDRSIVLYDLRQASPLKKVIL----TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNV-HKDHV  272 (433)
T ss_pred             cchheeeeccCCceEEEecccCCccceeee----eccccceecCc-cccceeeccccccceehhhhhhcccchh-hcccc
Confidence            888999999999999999999988777765    66778999999 9999999999999999999999888876 67999


Q ss_pred             CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107          241 GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR  320 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~  320 (331)
                      +.|.++.|+|.| .-+++++.|..|+++.......+.+.-- -.-..|.++.|+.|.         ++++||| +|+.|+
T Consensus       273 sAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Ds---------kyi~SGS-dd~nvR  340 (433)
T KOG0268|consen  273 SAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDS---------KYIISGS-DDGNVR  340 (433)
T ss_pred             eeEEEeccCCCc-chhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccc---------cEEEecC-CCccee
Confidence            999999999998 6788999999999999987533333211 124579999999998         7999999 999999


Q ss_pred             EEcCCCc
Q 020107          321 IWMPESD  327 (331)
Q Consensus       321 iW~~~~~  327 (331)
                      +|.....
T Consensus       341 lWka~As  347 (433)
T KOG0268|consen  341 LWKAKAS  347 (433)
T ss_pred             eeecchh
Confidence            9987543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.5e-32  Score=216.12  Aligned_cols=257  Identities=19%  Similarity=0.278  Sum_probs=206.8

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc------cCccEEEEEEcCC
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI------SSSMCLCLEWNPS  116 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~------~~~~v~~~~~~~~  116 (331)
                      .-.++.|+-.+..    ...+ ....|.+++|+|..|.   -+|+.+.-+.-+++..+...      -+..++++.|..|
T Consensus         8 t~e~~~w~~~~~~----~~~k-e~~~vssl~fsp~~P~---d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D   79 (487)
T KOG0310|consen    8 TPEIRYWRQETFP----PVHK-EHNSVSSLCFSPKHPY---DFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD   79 (487)
T ss_pred             Cccchhhhhhccc----cccc-ccCcceeEecCCCCCC---ceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecC
Confidence            4456666654432    1212 2357999999998653   45555444433666655433      2577899999999


Q ss_pred             CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc
Q 020107          117 ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM  196 (331)
Q Consensus       117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  196 (331)
                      |++|++|...|.|++||..+.  ..++.+.+|+.++..+.|+|.++..+++|++|+.+++||+.+......+.   +|++
T Consensus        80 G~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~---~htD  154 (487)
T KOG0310|consen   80 GRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS---GHTD  154 (487)
T ss_pred             CeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec---CCcc
Confidence            999999999999999996653  34788899999999999999999999999999999999999887433444   4999


Q ss_pred             ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc
Q 020107          197 GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE  276 (331)
Q Consensus       197 ~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (331)
                      .|+|.+|+|.++.+++||++||+|++||++....++.+  ..|+.+|.++.+-|.  +.++++++.+.+++|++-.. ++
T Consensus       155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e--lnhg~pVe~vl~lps--gs~iasAgGn~vkVWDl~~G-~q  229 (487)
T KOG0310|consen  155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE--LNHGCPVESVLALPS--GSLIASAGGNSVKVWDLTTG-GQ  229 (487)
T ss_pred             eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE--ecCCCceeeEEEcCC--CCEEEEcCCCeEEEEEecCC-ce
Confidence            99999999988889999999999999999996555555  899999999999998  45566666788999999865 56


Q ss_pred             eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          277 VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       277 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .+..+..|...|+++.+..++         ..|+|+| -|+.|++||+.+-
T Consensus       230 ll~~~~~H~KtVTcL~l~s~~---------~rLlS~s-LD~~VKVfd~t~~  270 (487)
T KOG0310|consen  230 LLTSMFNHNKTVTCLRLASDS---------TRLLSGS-LDRHVKVFDTTNY  270 (487)
T ss_pred             ehhhhhcccceEEEEEeecCC---------ceEeecc-cccceEEEEccce
Confidence            666666799999999999988         7999999 9999999996553

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.7e-33  Score=221.48  Aligned_cols=249  Identities=18%  Similarity=0.242  Sum_probs=211.1

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC-------cccCccEEEEEEcCCCCeEEEEecCCeE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE-------KISSSMCLCLEWNPSATSITVGLSDGSV  129 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i  129 (331)
                      ....+.+|+..|+++.|.|..   +.+|++++.|+.+ ||++...       ..|..+|.+++|+++|..+++++.|+.|
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~---~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKK---GHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             heeeccCCccccchhhhccce---eeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence            455678999999999999943   8899999999999 9987662       3389999999999999999999999999


Q ss_pred             EEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107          130 SIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN  209 (331)
Q Consensus       130 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  209 (331)
                      ++||+++|+.  +..+. -...++++.|+|++.+.+++|+.|+.|+.||+|+++.++.+..   |-+.|..+.|-+ ++.
T Consensus       283 KlwDtETG~~--~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~---hLg~i~~i~F~~-~g~  355 (503)
T KOG0282|consen  283 KLWDTETGQV--LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR---HLGAILDITFVD-EGR  355 (503)
T ss_pred             eeeccccceE--EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh---hhhheeeeEEcc-CCc
Confidence            9999999965  66665 3457899999997779999999999999999999998877777   999999999999 999


Q ss_pred             EEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc-ccceeEEeecCCc--
Q 020107          210 TLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE-KAEVLETYAKHGS--  286 (331)
Q Consensus       210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~--  286 (331)
                      .+++.+.|++++||+.+.+ .++............++..+|++ ..+++-+.++.+.++.+... .......+.+|..  
T Consensus       356 rFissSDdks~riWe~~~~-v~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG  433 (503)
T KOG0282|consen  356 RFISSSDDKSVRIWENRIP-VPIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG  433 (503)
T ss_pred             eEeeeccCccEEEEEcCCC-ccchhhcchhhccCcceecCCCC-CeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence            9999999999999999985 66665445556677889999997 77888889999888886543 2344556778854  


Q ss_pred             ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      --..+.||||+         ++|++|. .||.+.+||..+-.
T Consensus       434 ys~~v~fSpDG---------~~l~SGd-sdG~v~~wdwkt~k  465 (503)
T KOG0282|consen  434 YSCQVDFSPDG---------RTLCSGD-SDGKVNFWDWKTTK  465 (503)
T ss_pred             ceeeEEEcCCC---------CeEEeec-CCccEEEeechhhh
Confidence            44568999999         7999999 99999999987643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.1e-30  Score=213.26  Aligned_cols=240  Identities=19%  Similarity=0.268  Sum_probs=204.9

Q ss_pred             eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107           63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  135 (331)
                      .+|..+|++++|+|+    +++|++++.||.+ +|++.+.+      .+...+..+.|+|+++.+++++.+|.|++|++.
T Consensus         6 ~~h~~~i~~~~~~~~----~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           6 KGHTGGVTCVAFSPD----GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             cccCCCEEEEEEcCC----CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            579999999999999    8899999999999 99987653      256778899999999999999999999999998


Q ss_pred             ccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107          136 ESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      +++.  ...+..|...+.++.|+| ++.++++++.++.|++||+++++....+..   |...+.++.|+| ++.++++++
T Consensus        82 ~~~~--~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~  154 (289)
T cd00200          82 TGEC--VRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSP-DGTFVASSS  154 (289)
T ss_pred             cccc--eEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEecc---CCCcEEEEEEcC-cCCEEEEEc
Confidence            7643  666778888999999998 678888888899999999997776666664   888999999999 788888888


Q ss_pred             cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107          216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR  295 (331)
Q Consensus       216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  295 (331)
                      .|+.|++||++.. ++... +..|...+.++.|+|++ ..+++++.++.+.+|++..  ++.+..+..|...+.++.|+|
T Consensus       155 ~~~~i~i~d~~~~-~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~  229 (289)
T cd00200         155 QDGTIKLWDLRTG-KCVAT-LTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLST--GKCLGTLRGHENGVNSVAFSP  229 (289)
T ss_pred             CCCcEEEEEcccc-cccee-EecCccccceEEECCCc-CEEEEecCCCcEEEEECCC--CceecchhhcCCceEEEEEcC
Confidence            8999999999875 44443 46788899999999996 5677777788999999876  467777778888999999999


Q ss_pred             CCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          296 GRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       296 ~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ++         .++++++ .|+.|++|++.++.
T Consensus       230 ~~---------~~~~~~~-~~~~i~i~~~~~~~  252 (289)
T cd00200         230 DG---------YLLASGS-EDGTIRVWDLRTGE  252 (289)
T ss_pred             CC---------cEEEEEc-CCCcEEEEEcCCce
Confidence            96         6888887 89999999998643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=1.8e-31  Score=202.56  Aligned_cols=284  Identities=15%  Similarity=0.185  Sum_probs=214.7

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCc------c----------cceEEeEeeecCcEeEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAE------E----------KNLELLYRMDTAGIFDI   72 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~------~----------~~~~~~~~~~~~~v~~~   72 (331)
                      .+++.+-+|+|++   .++|+|+          .|-.|+|+|++..      .          -++...+-.|..+|+++
T Consensus       112 K~~cR~aafs~DG---~lvATGs----------aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l  178 (430)
T KOG0640|consen  112 KSPCRAAAFSPDG---SLVATGS----------ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL  178 (430)
T ss_pred             ccceeeeeeCCCC---cEEEccC----------CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence            3445555555555   9999999          8999999998721      0          03333445688999999


Q ss_pred             EEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceee-e
Q 020107           73 KWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEV-L  142 (331)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~  142 (331)
                      .|+|.    ..+|++|+.|+++ ++|......        ...+|.+++|+|.|.+|++|....++++||+++-+.-. .
T Consensus       179 ~FHPr----e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa  254 (430)
T KOG0640|consen  179 DFHPR----ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA  254 (430)
T ss_pred             eecch----hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence            99999    8999999999999 999876433        35789999999999999999999999999999864311 1


Q ss_pred             eeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEE
Q 020107          143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV  222 (331)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  222 (331)
                      ..-..|.+.|+++.+++ .+++.++++.||.|++||--+++++..+.. ......|++..|.. +++++++.+.|..+++
T Consensus       255 nPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~-AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkL  331 (430)
T KOG0640|consen  255 NPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGN-AHGGSEVCSAVFTK-NGKYILSSGKDSTVKL  331 (430)
T ss_pred             CcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHh-hcCCceeeeEEEcc-CCeEEeecCCcceeee
Confidence            12346889999999998 889999999999999999999998888765 22346799999999 9999999999999999


Q ss_pred             EEecCCCCCceeeeee-cCCc---eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107          223 WDVRSISKPVNETSVC-LGGG---VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       223 wd~~~~~~~~~~~~~~-~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  298 (331)
                      |.+.++ +++.+..-. ..+.   -+...|+...+..++---..+.+..|+-+.. .+.-.--.+|++.+..+.-+|.++
T Consensus       332 WEi~t~-R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta-dr~~l~slgHn~a~R~i~HSP~~p  409 (430)
T KOG0640|consen  332 WEISTG-RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA-DRVALLSLGHNGAVRWIVHSPVEP  409 (430)
T ss_pred             eeecCC-ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch-hhhhhcccCCCCCceEEEeCCCCC
Confidence            999996 555542111 1111   2345566554233332223345556666654 222222348999999999999995


Q ss_pred             cccccccCcEEEEeecCCCeEEEEcC
Q 020107          299 SLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       299 ~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                               -+++|| .|..+|+|--
T Consensus       410 ---------~FmTcs-dD~raRFWyr  425 (430)
T KOG0640|consen  410 ---------AFMTCS-DDFRARFWYR  425 (430)
T ss_pred             ---------ceeeec-ccceeeeeee
Confidence                     899999 9999999964

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-30  Score=196.62  Aligned_cols=306  Identities=43%  Similarity=0.695  Sum_probs=249.2

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCC--CCCcEEEEeccCccc-ceEEeEeeecCcEeEEEEcCCCCCCCC-eEEE
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPS--RNGSISLFNVNAEEK-NLELLYRMDTAGIFDIKWSPVGGNAGP-FLAQ   87 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~--~~g~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~   87 (331)
                      ...+.+||.....++||+|+|.++.+...+  +.|.+.+|++...+. ++..+....+..++.|.|.-.... +. .++-
T Consensus        12 ~~~~~~C~l~~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~-g~~~l~~   90 (339)
T KOG0280|consen   12 ADPVPICCLCHTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETD-GDFNLLD   90 (339)
T ss_pred             cCCCCccccccccceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCC-ccceeee
Confidence            566778887777789999999998873333  789999999987652 245566667788999999865433 45 6777


Q ss_pred             EcCCccE-EEecCC------------CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE
Q 020107           88 ADADGGL-LRDITG------------EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA  154 (331)
Q Consensus        88 ~~~dg~i-iw~~~~------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~  154 (331)
                      +...|.+ ++....            .+.......++.|++.+..++++..+|.+.+.+.....++.++.++.|+.+++.
T Consensus        91 a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wt  170 (339)
T KOG0280|consen   91 AHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWT  170 (339)
T ss_pred             ccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeee
Confidence            8888888 443322            111223467889999999999999999999777777777667789999999999


Q ss_pred             EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107          155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      ..|+..+++++.+|++|+.+..||+|.++ ...+...+.|...|.+|.-+|..+.+++||++|..|++||.|+..+|+..
T Consensus       171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~  249 (339)
T KOG0280|consen  171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK  249 (339)
T ss_pred             eecccCCCceEEecCCCceEEEEEecCCc-ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc
Confidence            99998888999999999999999999554 55555445699999999999878999999999999999999999999988


Q ss_pred             eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc---eeEEeecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107          235 TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE---VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVAT  311 (331)
Q Consensus       235 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  311 (331)
                        ....+.|+.+.++|.....++++|+.++.++.++.+...+   .....+.|.+.+++.+|....         .+|||
T Consensus       250 --~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~---------~~lAT  318 (339)
T KOG0280|consen  250 --AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKD---------SFLAT  318 (339)
T ss_pred             --CccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecccccccc---------ceeee
Confidence              7778999999999987788999999999999999886555   566677899999999995554         69999


Q ss_pred             eecCCCeEE-EEcCCCcccC
Q 020107          312 CSFYDRLLR-IWMPESDCLT  330 (331)
Q Consensus       312 ~~~~d~~i~-iW~~~~~~~~  330 (331)
                      |++.|+.++ +|-.-++.-.
T Consensus       319 CsFYDk~~~~~Wl~~t~~~t  338 (339)
T KOG0280|consen  319 CSFYDKKIRQLWLHITGEPT  338 (339)
T ss_pred             eeccccceeeeeeeccCCcC
Confidence            999999966 9988777644

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-31  Score=222.57  Aligned_cols=288  Identities=17%  Similarity=0.274  Sum_probs=226.6

Q ss_pred             eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe--ee---cCcEeEEEEcCCCC
Q 020107            5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR--MD---TAGIFDIKWSPVGG   79 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~--~~---~~~v~~~~~~~~~~   79 (331)
                      .+.++.+...|.-++..   +.+++++           ...++||.+............  ..   ...+.++.|..-. 
T Consensus        35 ~~~~k~~~nAIs~nr~~---~qiv~AG-----------rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~-   99 (839)
T KOG0269|consen   35 NCKLKAKANAISVNRDI---NQIVVAG-----------RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLY-   99 (839)
T ss_pred             eeecccccceEeecCCc---ceeEEec-----------ccceeeEeeCcccCCcceeeecccccceeeehhhcccccch-
Confidence            34577888888888776   6777776           678888888765432222211  11   1236788898543 


Q ss_pred             CCCCeEEEEcCCccE-EEecCC---Cc------ccCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeeeeecc
Q 020107           80 NAGPFLAQADADGGL-LRDITG---EK------ISSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQWKAH  148 (331)
Q Consensus        80 ~~~~~l~~~~~dg~i-iw~~~~---~~------~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  148 (331)
                        .++||+++.+|.| +||+..   .+      .|...+.++.|++... +|++|+.||.|++||++..+-  ...+.+.
T Consensus       100 --~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--~~t~~~n  175 (839)
T KOG0269|consen  100 --SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--KSTFRSN  175 (839)
T ss_pred             --hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc--ccccccc
Confidence              6699999999999 999987   22      2788999999998664 589999999999999998654  5667778


Q ss_pred             cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      ...|++++|+|..++.|+++.+.|.+++||+|.... ...+   .+|.++|.|+.|+| ++.+|||||.|++|+|||+..
T Consensus       176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~---~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~  251 (839)
T KOG0269|consen  176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL---TAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTD  251 (839)
T ss_pred             chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh---hcccCceEEEeecC-CCceeeecCCCccEEEEeccC
Confidence            889999999998899999999999999999998753 3333   44999999999999 999999999999999999986


Q ss_pred             CCCCceeeeeecCCceEEEEECCCCCCeEEEEE--ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCccccccc
Q 020107          228 ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC--MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRK  305 (331)
Q Consensus       228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  305 (331)
                      .+ +..........+|.+++|-|.....|++++  .+-.+++|+++.. .-+..++..|+..++.++|.....       
T Consensus       252 ~~-~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP-YIP~~t~~eH~~~vt~i~W~~~d~-------  322 (839)
T KOG0269|consen  252 SR-AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP-YIPYATFLEHTDSVTGIAWDSGDR-------  322 (839)
T ss_pred             CC-ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc-cccceeeeccCccccceeccCCCc-------
Confidence            42 222223566789999999999865555544  3567899999886 567788999999999999988554       


Q ss_pred             CcEEEEeecCCCeEEEEcCCC
Q 020107          306 NSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       306 ~~~l~s~~~~d~~i~iW~~~~  326 (331)
                       ..+.+++ .|++|..-.+++
T Consensus       323 -~~l~s~s-KD~tv~qh~~kn  341 (839)
T KOG0269|consen  323 -INLWSCS-KDGTVLQHLFKN  341 (839)
T ss_pred             -eeeEeec-CccHHHHhhhhc
Confidence             6899999 999886655443

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=5.4e-30  Score=219.36  Aligned_cols=209  Identities=15%  Similarity=0.131  Sum_probs=166.3

Q ss_pred             cCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccce-----eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107          104 SSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQL-----EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW  177 (331)
Q Consensus       104 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (331)
                      |...|.+++|+| ++++|++|+.|++|++||+.++..     .++..+.+|...|.+++|+|...++|++++.|+.|++|
T Consensus        74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW  153 (493)
T PTZ00421         74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW  153 (493)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence            678999999999 788999999999999999976431     34667889999999999999556899999999999999


Q ss_pred             EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc-eEEEEECCCCCCeE
Q 020107          178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG-VWRIKHHPFIPGLV  256 (331)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~  256 (331)
                      |+++++....+..   |...|.+++|+| ++.+|++++.|++|++||++++ +.+.. ...|.+. +..+.|.+++ ..+
T Consensus       154 Dl~tg~~~~~l~~---h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg-~~v~t-l~~H~~~~~~~~~w~~~~-~~i  226 (493)
T PTZ00421        154 DVERGKAVEVIKC---HSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDG-TIVSS-VEAHASAKSQRCLWAKRK-DLI  226 (493)
T ss_pred             ECCCCeEEEEEcC---CCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCC-cEEEE-EecCCCCcceEEEEcCCC-CeE
Confidence            9998876666665   999999999999 9999999999999999999986 44444 4567654 4578899886 566


Q ss_pred             EEEEe----cCcEEEEEEcCcccceeEEeecC-CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          257 LAACM----HNGFAVVKVGGEKAEVLETYAKH-GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       257 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ++++.    ++.+++|++... ...+.....+ ...+....|++++         ++|++++..|+.|++||+.++.+
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~-~~p~~~~~~d~~~~~~~~~~d~d~---------~~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKM-ASPYSTVDLDQSSALFIPFFDEDT---------NLLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCC-CCceeEeccCCCCceEEEEEcCCC---------CEEEEEEeCCCeEEEEEeeCCce
Confidence            66553    567999998765 2344444333 3455566788888         57777762499999999987653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-30  Score=198.84  Aligned_cols=286  Identities=17%  Similarity=0.311  Sum_probs=226.1

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      ++||-..|--........++.+++          .|.+.+||.++.+. .+ ..+.+|.+.|++++|++.    +.++++
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtAS----------ADhTA~iWs~Esg~-CL-~~Y~GH~GSVNsikfh~s----~~L~lT  207 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTAS----------ADHTARIWSLESGA-CL-ATYTGHTGSVNSIKFHNS----GLLLLT  207 (481)
T ss_pred             hcccccceeeehhhcCCcceeecc----------cccceeEEeecccc-ce-eeecccccceeeEEeccc----cceEEE
Confidence            455655554444333335777776          89999999999986 34 455899999999999999    999999


Q ss_pred             EcCCccE-EEe------cCCCc----------------------------------------ccCccEEEEEEcCCCCeE
Q 020107           88 ADADGGL-LRD------ITGEK----------------------------------------ISSSMCLCLEWNPSATSI  120 (331)
Q Consensus        88 ~~~dg~i-iw~------~~~~~----------------------------------------~~~~~v~~~~~~~~~~~l  120 (331)
                      ++.|++. ||.      +....                                        .|...|.+..|-..++.+
T Consensus       208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~  287 (481)
T KOG0300|consen  208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM  287 (481)
T ss_pred             ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee
Confidence            9999998 765      22100                                        034566777888889999


Q ss_pred             EEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEE
Q 020107          121 TVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCC  200 (331)
Q Consensus       121 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  200 (331)
                      ++++.|.+..+||++++..  +..+.+|+...+.++-+| ...++++.+.|.+.++||.+..  ++....+++|...|++
T Consensus       288 vTaSWDRTAnlwDVEtge~--v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  288 VTASWDRTANLWDVETGEV--VNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGHTDTVTS  362 (481)
T ss_pred             eeeeccccceeeeeccCce--eccccCcchhccccccCC-cceEEEEeccCceeEeccchhh--cceeeeecccccceeE
Confidence            9999999999999999854  888999999999999999 7899999999999999999943  4444445569999999


Q ss_pred             EEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec-CcEEEEEEcCccc-cee
Q 020107          201 IASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH-NGFAVVKVGGEKA-EVL  278 (331)
Q Consensus       201 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~  278 (331)
                      +.|..  +..+++|+.|.+|++||++++..|+..  .....+++.++.+..  +.+++.-.| ..++++++....- ++.
T Consensus       363 ~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplAT--IRtdS~~NRvavs~g--~~iIAiPhDNRqvRlfDlnG~RlaRlP  436 (481)
T KOG0300|consen  363 VVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLAT--IRTDSPANRVAVSKG--HPIIAIPHDNRQVRLFDLNGNRLARLP  436 (481)
T ss_pred             EEEec--CCceeecCCCceEEEeeeccccCccee--eecCCccceeEeecC--CceEEeccCCceEEEEecCCCccccCC
Confidence            99985  667999999999999999999999988  778889999999987  445555444 4567777765321 111


Q ss_pred             -EEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          279 -ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       279 -~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                       ..-.+|...|++++|..+.+-       .-|++|| -|..+.=|+++...
T Consensus       437 rtsRqgHrRMV~c~AW~eehp~-------cnLftcG-FDR~v~gW~in~p~  479 (481)
T KOG0300|consen  437 RTSRQGHRRMVTCCAWLEEHPA-------CNLFTCG-FDRMVAGWKINTPT  479 (481)
T ss_pred             cccccccceeeeeeeccccCcc-------ccccccc-ccceeeeeEecccC
Confidence             133489999999999987541       4688999 79999999987653

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=3e-29  Score=214.77  Aligned_cols=223  Identities=14%  Similarity=0.140  Sum_probs=176.2

Q ss_pred             eEeeecCcEeEEEEcC-CCCCCCCeEEEEcCCccE-EEecCCCc-------------ccCccEEEEEEcCCC-CeEEEEe
Q 020107           61 LYRMDTAGIFDIKWSP-VGGNAGPFLAQADADGGL-LRDITGEK-------------ISSSMCLCLEWNPSA-TSITVGL  124 (331)
Q Consensus        61 ~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~~~~~~-------------~~~~~v~~~~~~~~~-~~l~~~~  124 (331)
                      .+.+|.+.|++++|+| +    +.+|++|+.|+.+ +|++....             .|...|.+++|+|++ +.|++++
T Consensus        70 ~l~GH~~~V~~v~fsP~d----~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs  145 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFD----PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG  145 (493)
T ss_pred             eEeCCCCCEEEEEEcCCC----CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence            3578999999999999 5    7799999999999 99987542             267889999999986 6899999


Q ss_pred             cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcc-eEEEEE
Q 020107          125 SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMG-VCCIAS  203 (331)
Q Consensus       125 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~~~~  203 (331)
                      .|+.|++||+++++.  +..+..|...|.+++|+| ++.+|++++.|+.|++||+++++....+..   |... +..+.|
T Consensus       146 ~DgtVrIWDl~tg~~--~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~---H~~~~~~~~~w  219 (493)
T PTZ00421        146 ADMVVNVWDVERGKA--VEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEA---HASAKSQRCLW  219 (493)
T ss_pred             CCCEEEEEECCCCeE--EEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEec---CCCCcceEEEE
Confidence            999999999998753  677888999999999999 889999999999999999999887666655   7654 456788


Q ss_pred             ecCCCCEEEEEe----cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCccccee
Q 020107          204 IPSDSNTLLTGS----YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVL  278 (331)
Q Consensus       204 ~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  278 (331)
                      .+ ++..+++++    .|+.|++||+++...++..........+....|++++ ..+++++ .++.+++|++.+.  +.+
T Consensus       220 ~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~--~~~  295 (493)
T PTZ00421        220 AK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNE--RLT  295 (493)
T ss_pred             cC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCC--ceE
Confidence            88 666666654    4789999999987666654222334556677889987 5666665 4888999999874  444


Q ss_pred             EEeec-CCcceeeeeecCCC
Q 020107          279 ETYAK-HGSLAYGADWQRGR  297 (331)
Q Consensus       279 ~~~~~-h~~~v~~~~~~~~~  297 (331)
                      ..... +..++.+++|.|..
T Consensus       296 ~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        296 FCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             EEeeccCCCCCcceEecccc
Confidence            44432 45567888888864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=1.5e-29  Score=187.51  Aligned_cols=277  Identities=18%  Similarity=0.297  Sum_probs=223.4

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+++.+|+|..++   ..||+|+          -|+++.+|+++..........++|.+.|-.++|.|.+   ...|+++
T Consensus        20 ~~~v~Sv~wn~~g---~~lasgs----------~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~---~d~~ata   83 (313)
T KOG1407|consen   20 VQKVHSVAWNCDG---TKLASGS----------FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH---PDLFATA   83 (313)
T ss_pred             hhcceEEEEcccC---ceeeecc----------cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC---CcceEEe
Confidence            3567788888877   8999999          6999999999987655666778999999999999987   4599999


Q ss_pred             cCCccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           89 DADGGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      +.|.++ +|++...++.     ...-.-+.|+|+|++++++..|..|.+.|.++.+.  ....+ ....+..++|+ .++
T Consensus        84 s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~--~~~~~-~~~e~ne~~w~-~~n  159 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI--VNEEQ-FKFEVNEISWN-NSN  159 (313)
T ss_pred             cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccce--eehhc-ccceeeeeeec-CCC
Confidence            999999 9999988763     33334678999999999999999999999987654  33333 34567889999 477


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG  242 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  242 (331)
                      ++++.....|+|.|.....-+.+..++.   |.....||.|+| +|++||+|+.|-.+.+||+... .+... +..+.-+
T Consensus       160 d~Fflt~GlG~v~ILsypsLkpv~si~A---H~snCicI~f~p-~GryfA~GsADAlvSLWD~~EL-iC~R~-isRldwp  233 (313)
T KOG1407|consen  160 DLFFLTNGLGCVEILSYPSLKPVQSIKA---HPSNCICIEFDP-DGRYFATGSADALVSLWDVDEL-ICERC-ISRLDWP  233 (313)
T ss_pred             CEEEEecCCceEEEEecccccccccccc---CCcceEEEEECC-CCceEeeccccceeeccChhHh-hhhee-eccccCc
Confidence            8888888789999999887766666666   999999999999 9999999999999999999975 33333 5788999


Q ss_pred             eEEEEECCCCCCeEEEEEecCcEEEEEEcC-cccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC-----
Q 020107          243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGG-EKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD-----  316 (331)
Q Consensus       243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d-----  316 (331)
                      |..+.|+.+  +.++++++++.  .+++.. .++..+..++ ++++-..++|+|..         .+||-+. .|     
T Consensus       234 VRTlSFS~d--g~~lASaSEDh--~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~---------~LLAyA~-ddk~~d~  298 (313)
T KOG1407|consen  234 VRTLSFSHD--GRMLASASEDH--FIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR---------PLLAYAC-DDKDGDS  298 (313)
T ss_pred             eEEEEeccC--cceeeccCccc--eEEeEecccCCeEEEee-ccCCceeEEecCCC---------ceeeEEe-cCCCCcc
Confidence            999999999  56677777776  666644 3366666665 67889999999998         4777665 33     


Q ss_pred             ----CeEEEEcCCC
Q 020107          317 ----RLLRIWMPES  326 (331)
Q Consensus       317 ----~~i~iW~~~~  326 (331)
                          |.|+++-+.+
T Consensus       299 ~reag~vKiFG~~~  312 (313)
T KOG1407|consen  299 NREAGTVKIFGLSN  312 (313)
T ss_pred             ccccceeEEecCCC
Confidence                6788876653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=1.3e-28  Score=179.28  Aligned_cols=282  Identities=16%  Similarity=0.230  Sum_probs=217.7

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc----------cc---eEEeEeeecCcEeEEEEc
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE----------KN---LELLYRMDTAGIFDIKWS   75 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~----------~~---~~~~~~~~~~~v~~~~~~   75 (331)
                      ...+.+|+|+|.+   .+.|+|+          ...+++|-......          .+   +..-.+.|.+.|+|.+|+
T Consensus        32 sqairav~fhp~g---~lyavgs----------nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws   98 (350)
T KOG0641|consen   32 SQAIRAVAFHPAG---GLYAVGS----------NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS   98 (350)
T ss_pred             hhheeeEEecCCC---ceEEecc----------CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence            4577888888887   8999998          67788886543211          11   112224478889999999


Q ss_pred             CCCCCCCCeEEEEcCCccE-E--EecCCC---------cccCccEEEEEEcCC----CCeEEEEec-CCeEEEEEccccc
Q 020107           76 PVGGNAGPFLAQADADGGL-L--RDITGE---------KISSSMCLCLEWNPS----ATSITVGLS-DGSVSIVSVVESQ  138 (331)
Q Consensus        76 ~~~~~~~~~l~~~~~dg~i-i--w~~~~~---------~~~~~~v~~~~~~~~----~~~l~~~~~-dg~i~i~d~~~~~  138 (331)
                      |.    +++|++|+.|..+ +  ++..+.         ..|.+.|..++|..+    +..|++++. |..|++-|...++
T Consensus        99 ~~----geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~  174 (350)
T KOG0641|consen   99 PC----GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ  174 (350)
T ss_pred             Cc----cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence            99    9999999999999 2  333322         237889999999643    345666655 7777777777664


Q ss_pred             eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc----CCCcceEEEEEecCCCCEEEEE
Q 020107          139 LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK----IHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                        ....+.+|.+.|.++- + .++.++++|+.|.+|++||+|-..++..+....    -....|.+++..| .+++|++|
T Consensus       175 --~~~a~sghtghilaly-s-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg  249 (350)
T KOG0641|consen  175 --GFHALSGHTGHILALY-S-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASG  249 (350)
T ss_pred             --cceeecCCcccEEEEE-E-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-Ccceeeec
Confidence              4888999999888773 2 356899999999999999999888776664411    1236799999999 99999999


Q ss_pred             ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--cceeEEeecCCcceeeee
Q 020107          215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK--AEVLETYAKHGSLAYGAD  292 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~  292 (331)
                      -.|....+||++.+ +++.. +.+|...|.++.|+|.. .++++++.+..|++-++...-  .-.+.....|...+..+.
T Consensus       250 ~~dssc~lydirg~-r~iq~-f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r  326 (350)
T KOG0641|consen  250 HADSSCMLYDIRGG-RMIQR-FHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR  326 (350)
T ss_pred             cCCCceEEEEeeCC-ceeee-eCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE
Confidence            99999999999985 66665 68999999999999986 778888888888888876532  233455668999999999


Q ss_pred             ecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      |+|..         --+++.+ .|.++.+|-++
T Consensus       327 wh~~d---------~sfisss-adkt~tlwa~~  349 (350)
T KOG0641|consen  327 WHPQD---------FSFISSS-ADKTATLWALN  349 (350)
T ss_pred             ecCcc---------ceeeecc-CcceEEEeccC
Confidence            99998         4677777 89999999764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=4.2e-30  Score=199.80  Aligned_cols=241  Identities=19%  Similarity=0.278  Sum_probs=198.6

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEE--eEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL--LYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      .+++.++.|...++....|++++          .|.++++|..+.....+..  ..++|...|-++...++    +..++
T Consensus       144 t~~ik~v~~v~~n~~~~~fvsas----------~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s----gtr~~  209 (423)
T KOG0313|consen  144 TGPIKSVAWVIKNSSSCLFVSAS----------MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS----GTRFC  209 (423)
T ss_pred             CcceeeeEEEecCCccceEEEec----------CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC----CCeEE
Confidence            34566666766665445788888          7999999999876643333  33599999999999999    99999


Q ss_pred             EEcCCccE-EEecCCCc-------------------------------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEc
Q 020107           87 QADADGGL-LRDITGEK-------------------------------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSV  134 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~-------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  134 (331)
                      +|+.|..+ +|+.....                               .|..+|.++.|++ ...+++++.|.+|+.||+
T Consensus       210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDl  288 (423)
T KOG0313|consen  210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDL  288 (423)
T ss_pred             eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEe
Confidence            99999999 99933211                               1678899999997 678999999999999999


Q ss_pred             cccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107          135 VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      ++++.  +..+.+ ...++++..+| ..++|++|+.|..+++||.|++.-....+.+-+|+..|.++.|+|.+..+|+++
T Consensus       289 etg~~--~~~~~~-~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~  364 (423)
T KOG0313|consen  289 ETGGL--KSTLTT-NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG  364 (423)
T ss_pred             ecccc--eeeeec-CcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEE
Confidence            99865  555553 55799999999 889999999999999999998865433333355999999999999888999999


Q ss_pred             ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107          215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG  271 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (331)
                      +.|+++++||+|+.+.|+.. ..+|...|.++.|+..  ..++++|.|+.++++.-.
T Consensus       365 S~D~t~klWDvRS~k~plyd-I~~h~DKvl~vdW~~~--~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  365 SYDNTVKLWDVRSTKAPLYD-IAGHNDKVLSVDWNEG--GLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ecCCeEEEEEeccCCCccee-eccCCceEEEEeccCC--ceEEeccCcceEEEeccc
Confidence            99999999999998768877 6899999999999987  788888899988887644

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.9e-31  Score=201.57  Aligned_cols=242  Identities=17%  Similarity=0.232  Sum_probs=207.3

Q ss_pred             eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------------cCccEEEEEEcCCCCeEEEEecCCe
Q 020107           64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------------SSSMCLCLEWNPSATSITVGLSDGS  128 (331)
Q Consensus        64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~dg~  128 (331)
                      +...-+.|..|+|+    +++|++|+.||.+ +|+..+++.              +..+|.|+.|+.|.+.+++|+.||.
T Consensus       211 g~KSh~EcA~FSPD----gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk  286 (508)
T KOG0275|consen  211 GQKSHVECARFSPD----GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK  286 (508)
T ss_pred             ccccchhheeeCCC----CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence            44566889999999    9999999999999 999988765              4788999999999999999999999


Q ss_pred             EEEEEccccceeeeeeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC
Q 020107          129 VSIVSVVESQLEVLQQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD  207 (331)
Q Consensus       129 i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  207 (331)
                      |++|.++++..  ++.+. .|...|+++.|+. ++..+++++.|.++++.-+.++++.+.+..   |.+.|+...|.+ +
T Consensus       287 IKvWri~tG~C--lRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrG---HsSyvn~a~ft~-d  359 (508)
T KOG0275|consen  287 IKVWRIETGQC--LRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRG---HSSYVNEATFTD-D  359 (508)
T ss_pred             EEEEEEecchH--HHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcC---ccccccceEEcC-C
Confidence            99999999954  77776 8999999999997 788899999999999999999999988888   999999999999 9


Q ss_pred             CCEEEEEecCCeEEEEEecCCCCCcee-eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec---
Q 020107          208 SNTLLTGSYDEYLRVWDVRSISKPVNE-TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK---  283 (331)
Q Consensus       208 ~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  283 (331)
                      |..+++++.||+|++|+.++. .++.. ...+...+|.++..-|..+..++++-..+.+.+.++.   ++.+.++..   
T Consensus       360 G~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q---GQvVrsfsSGkR  435 (508)
T KOG0275|consen  360 GHHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ---GQVVRSFSSGKR  435 (508)
T ss_pred             CCeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc---ceEEeeeccCCc
Confidence            999999999999999999986 44433 2234566899999999887888887777776665554   677777762   


Q ss_pred             CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107          284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT  330 (331)
Q Consensus       284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~  330 (331)
                      ..+...++..+|.|         .++...+ +|+.++.+.+.+|.+.
T Consensus       436 EgGdFi~~~lSpkG---------ewiYcig-ED~vlYCF~~~sG~LE  472 (508)
T KOG0275|consen  436 EGGDFINAILSPKG---------EWIYCIG-EDGVLYCFSVLSGKLE  472 (508)
T ss_pred             cCCceEEEEecCCC---------cEEEEEc-cCcEEEEEEeecCcee
Confidence            23456677889998         6999999 9999999999888765

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=7.2e-29  Score=213.51  Aligned_cols=240  Identities=14%  Similarity=0.145  Sum_probs=181.8

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC--------------cccCc
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE--------------KISSS  106 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~--------------~~~~~  106 (331)
                      ..+.|++|+.....  ....+.+|...|.+++|+|++   +.+|++|+.||.+ +|++...              ..|..
T Consensus        52 ~~gvI~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~---~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         52 LIGAIRLENQMRKP--PVIKLKGHTSSILDLQFNPCF---SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             ceeEEEeeecCCCc--eEEEEcCCCCCEEEEEEcCCC---CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence            67899999987653  344457899999999999974   5699999999999 9998753              12678


Q ss_pred             cEEEEEEcCCCCe-EEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107          107 MCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK  185 (331)
Q Consensus       107 ~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (331)
                      .|.+++|+|++.. |++++.|++|++||+++++.  ...+. |...|.+++|+| ++.+|++++.|+.|+|||+++++..
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIA  202 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEE
Confidence            8999999999876 57889999999999998754  44454 556899999998 8899999999999999999998877


Q ss_pred             eeeecccCCCcceEEE-----EEecCCCCEEEEEecCC----eEEEEEecCCCCCceeeeeecCCceEE--EEECCCCCC
Q 020107          186 LAFQNSKIHKMGVCCI-----ASIPSDSNTLLTGSYDE----YLRVWDVRSISKPVNETSVCLGGGVWR--IKHHPFIPG  254 (331)
Q Consensus       186 ~~~~~~~~~~~~v~~~-----~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~  254 (331)
                      ..+..   |.+.+.+.     .|++ ++.+|++++.|+    .|+|||++....++..  ..+......  -.|.++...
T Consensus       203 ~tl~g---H~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~--~~ld~~~~~L~p~~D~~tg~  276 (568)
T PTZ00420        203 SSFHI---HDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVT--MSIDNASAPLIPHYDESTGL  276 (568)
T ss_pred             EEEec---ccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEE--EEecCCccceEEeeeCCCCC
Confidence            66665   77665433     3457 778889888774    7999999976677765  333322222  233344326


Q ss_pred             eEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107          255 LVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                      ++++++.|+.+++|++.......+..+. +..++.+++|.|..
T Consensus       277 l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        277 IYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence            6777778999999999764333333333 56788899999975

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.97  E-value=1.4e-29  Score=190.39  Aligned_cols=297  Identities=22%  Similarity=0.323  Sum_probs=224.6

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LELLYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      ++....|+.--.-..+.-.|.+|+..+.      .++.|.+.+++..... ....+..|.+.|..++-+|.+   ..+|+
T Consensus        10 le~qAR~lT~qtad~d~icFlvgTnslK------~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d---~~ila   80 (370)
T KOG1007|consen   10 LEYQARCLTPQTADRDHICFLVGTNSLK------EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFD---QRILA   80 (370)
T ss_pred             eeeeeeecCccccCccceEEEEeccccC------CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCC---CceEE
Confidence            4444455543333333457888874333      4789999988876533 445556677889999999985   55777


Q ss_pred             EEcCC----ccE----EEecCCCcc----------------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee
Q 020107           87 QADAD----GGL----LRDITGEKI----------------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL  142 (331)
Q Consensus        87 ~~~~d----g~i----iw~~~~~~~----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  142 (331)
                      ++..+    |.+    ||.+.....                +-+.|.|+.|.|++..+++-. |..|.+|++..+... +
T Consensus        81 T~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~-v  158 (370)
T KOG1007|consen   81 TVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI-V  158 (370)
T ss_pred             EEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch-h
Confidence            76542    222    998865321                235789999999998888766 789999999875421 2


Q ss_pred             eee-----ecccceeEEEeeCC-CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec
Q 020107          143 QQW-----KAHEFELWATSFDV-HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       143 ~~~-----~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                      ..+     ..+....++-+|+| ++++.+++.+ |+++..||+|+.++...+.  .+|...|+.+.|+|....+|++|+.
T Consensus       159 aev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~--dAHgq~vrdlDfNpnkq~~lvt~gD  235 (370)
T KOG1007|consen  159 AEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE--DAHGQRVRDLDFNPNKQHILVTCGD  235 (370)
T ss_pred             eeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh--hhhcceeeeccCCCCceEEEEEcCC
Confidence            222     23566788999999 4667776655 8999999999876655444  4699999999999977788999999


Q ss_pred             CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc----------------------
Q 020107          217 DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK----------------------  274 (331)
Q Consensus       217 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  274 (331)
                      ||.|++||.|+.+.|+.+ +.+|...|++++|+|..+.+++++++|..+.++......                      
T Consensus       236 dgyvriWD~R~tk~pv~e-l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer  314 (370)
T KOG1007|consen  236 DGYVRIWDTRKTKFPVQE-LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER  314 (370)
T ss_pred             CccEEEEeccCCCccccc-cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHh
Confidence            999999999998888887 789999999999999888899999998887776543211                      


Q ss_pred             -----cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          275 -----AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       275 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                           ...+.++..|...|++++|+.-.|        .++|+-+ +||++.|=++....
T Consensus       315 ~kpL~dg~l~tydehEDSVY~~aWSsadP--------WiFASLS-YDGRviIs~V~r~~  364 (370)
T KOG1007|consen  315 VKPLQDGQLETYDEHEDSVYALAWSSADP--------WIFASLS-YDGRVIISSVPRFL  364 (370)
T ss_pred             cccccccccccccccccceEEEeeccCCC--------eeEEEec-cCceEEeecCChhh
Confidence                 234567889999999999999998        8999999 99999998776543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-29  Score=210.13  Aligned_cols=235  Identities=17%  Similarity=0.256  Sum_probs=201.0

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      +..+.+|.|++.+   .+||+|.          .+|.|.|||..+.. .+..+...|...|-+++|+..      .+.+|
T Consensus       217 ~~~vtSv~ws~~G---~~LavG~----------~~g~v~iwD~~~~k-~~~~~~~~h~~rvg~laW~~~------~lssG  276 (484)
T KOG0305|consen  217 EELVTSVKWSPDG---SHLAVGT----------SDGTVQIWDVKEQK-KTRTLRGSHASRVGSLAWNSS------VLSSG  276 (484)
T ss_pred             CCceEEEEECCCC---CEEEEee----------cCCeEEEEehhhcc-ccccccCCcCceeEEEeccCc------eEEEe
Confidence            6788999999988   8999999          89999999998876 455553338999999999976      99999


Q ss_pred             cCCccE-EEecCCC-------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           89 DADGGL-LRDITGE-------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        89 ~~dg~i-iw~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      +.++.+ .+++...       +.|...|..++|++++.++|+|+.|+.+.|||....  ++...+..|...|.+++|+|.
T Consensus       277 sr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~--~p~~~~~~H~aAVKA~awcP~  354 (484)
T KOG0305|consen  277 SRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP--EPKFTFTEHTAAVKALAWCPW  354 (484)
T ss_pred             cCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc--cccEEEeccceeeeEeeeCCC
Confidence            999999 7777653       347899999999999999999999999999999654  457888899999999999999


Q ss_pred             CCcEEEEEc--CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE--ecCCeEEEEEecCCCCCceeee
Q 020107          161 QPHMVYTGS--DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG--SYDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       161 ~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~  236 (331)
                      ...+||+|+  .|+.|++||..++..+..+..    ...|++|.|++ ..+-|+++  ..++.|.||+..+.+. +.. +
T Consensus       355 q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt----gsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~ps~~~-~~~-l  427 (484)
T KOG0305|consen  355 QSGLLATGGGSADRCIKFWNTNTGARIDSVDT----GSQVCSLIWSK-KYKELLSTHGYSENQITLWKYPSMKL-VAE-L  427 (484)
T ss_pred             ccCceEEcCCCcccEEEEEEcCCCcEeccccc----CCceeeEEEcC-CCCEEEEecCCCCCcEEEEeccccce-eee-e
Confidence            999999976  789999999999987777664    78899999999 55444443  3567899999998643 333 5


Q ss_pred             eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      .+|...|..++++|++ ..+++++.|..+++|++++.
T Consensus       428 ~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  428 LGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cCCcceeEEEEECCCC-CEEEEecccCcEEeccccCC
Confidence            8999999999999998 78889999999999999985

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=9.6e-30  Score=202.12  Aligned_cols=222  Identities=18%  Similarity=0.233  Sum_probs=183.2

Q ss_pred             EEecCCCcccCccEEEEEEcCCCCe-EEEEecCCeEEEEEcccc--------ceeeeeeeecccceeEEEeeCCCCCcEE
Q 020107           95 LRDITGEKISSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVES--------QLEVLQQWKAHEFELWATSFDVHQPHMV  165 (331)
Q Consensus        95 iw~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (331)
                      .+++...-.|.+.|+.+.+.|+... +++.+..+.|.|||..+.        ...+-..+.+|...-++++|++.....+
T Consensus       114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L  193 (422)
T KOG0264|consen  114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL  193 (422)
T ss_pred             ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence            3444444557888999999997765 566677999999998762        2233447889998889999999888899


Q ss_pred             EEEcCCCeEEEEEccCCCc----eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107          166 YTGSDDCKFSGWDIRESPF----KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG  241 (331)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  241 (331)
                      ++++.|+.|++||+.....    +.....+.+|...|..++|+|.+..+|++++.|+.+.|||+|+...+......+|.+
T Consensus       194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence            9999999999999986543    222333455999999999999889999999999999999999632333333589999


Q ss_pred             ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107          242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI  321 (331)
Q Consensus       242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i  321 (331)
                      +|++++|+|.+..++++++.|+.+.+|++++. ...+.++.+|...|..+.|+|...        ..|||+| .|+.+.+
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL-~~~lh~~e~H~dev~~V~WSPh~e--------tvLASSg-~D~rl~v  343 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNL-NKPLHTFEGHEDEVFQVEWSPHNE--------TVLASSG-TDRRLNV  343 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhc-ccCceeccCCCcceEEEEeCCCCC--------ceeEecc-cCCcEEE
Confidence            99999999998666777777999999999998 568899999999999999999987        8999999 9999999


Q ss_pred             EcCCC
Q 020107          322 WMPES  326 (331)
Q Consensus       322 W~~~~  326 (331)
                      ||+..
T Consensus       344 WDls~  348 (422)
T KOG0264|consen  344 WDLSR  348 (422)
T ss_pred             Eeccc
Confidence            99864

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.6e-29  Score=187.79  Aligned_cols=263  Identities=17%  Similarity=0.268  Sum_probs=206.2

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      +..+.+++|+|...  .++++|+          -||+||+|+++............|.++|.+++|+.+    +..+++|
T Consensus        27 ~DsIS~l~FSP~~~--~~~~A~S----------WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd----gskVf~g   90 (347)
T KOG0647|consen   27 EDSISALAFSPQAD--NLLAAGS----------WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD----GSKVFSG   90 (347)
T ss_pred             ccchheeEeccccC--ceEEecc----------cCCceEEEEEecCCcccchhhhccCCCeEEEEEccC----CceEEee
Confidence            45678899999432  6777888          699999999988532344555678999999999999    9999999


Q ss_pred             cCCccE-EEecCCCcc-----cCccEEEEEEcCCCC--eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSAT--SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      +.|+.+ +||+.+++.     |..+|.++.|-+...  .|++|+.|.+|+.||.+....  +..+. -.+.++++..-  
T Consensus        91 ~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p--v~t~~-LPeRvYa~Dv~--  165 (347)
T KOG0647|consen   91 GCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP--VATLQ-LPERVYAADVL--  165 (347)
T ss_pred             ccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe--eeeee-ccceeeehhcc--
Confidence            999999 999999875     899999999987665  799999999999999997643  55555 34567777753  


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                       ..+++.+..+..|.+|+++++..+..... ..-.-.++||+..+ +....+.|+-+|.+-+..+..+.......+.-|.
T Consensus       166 -~pm~vVata~r~i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR  242 (347)
T KOG0647|consen  166 -YPMAVVATAERHIAVYNLENPPTEFKRIE-SPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHR  242 (347)
T ss_pred             -CceeEEEecCCcEEEEEcCCCcchhhhhc-CcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEec
Confidence             36788888899999999987654322222 12455689999998 7777799999999999998875222222234554


Q ss_pred             C---------ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107          241 G---------GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       241 ~---------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  298 (331)
                      .         .|++|+|+|.. +.++++|+|+.+.+|+-..  ...+.+...|..+|++..|+.+|.
T Consensus       243 ~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkda--r~kLk~s~~~~qpItcc~fn~~G~  306 (347)
T KOG0647|consen  243 STNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDA--RTKLKTSETHPQPITCCSFNRNGS  306 (347)
T ss_pred             cCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchh--hhhhhccCcCCCccceeEecCCCC
Confidence            2         57889999976 8999999999877776555  356777788999999999999994

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.6e-28  Score=185.90  Aligned_cols=241  Identities=16%  Similarity=0.175  Sum_probs=195.2

Q ss_pred             eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEec--CCeEEEEE
Q 020107           63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLS--DGSVSIVS  133 (331)
Q Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d  133 (331)
                      +.....|+++.|+++    |..|++++.|..+ +++...+..      ++-.+..++|......++.++.  |.+|+..+
T Consensus        11 ~~~~~~i~sl~fs~~----G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen   11 RETNGKINSLDFSDD----GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             ccCCCceeEEEecCC----CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence            445678999999999    9999999999888 999887765      2446677888777777777766  89999999


Q ss_pred             ccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107          134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT  213 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  213 (331)
                      +.+++.  ++.+.+|...|.+++.+| .++.+++++.|++|++||+|..++...+..     ..-..++|.| .|-++|+
T Consensus        87 l~dNky--lRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-----~~~pi~AfDp-~GLifA~  157 (311)
T KOG1446|consen   87 LHDNKY--LRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-----SGRPIAAFDP-EGLIFAL  157 (311)
T ss_pred             eecCce--EEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEec-----CCCcceeECC-CCcEEEE
Confidence            998865  999999999999999999 669999999999999999998887666654     2334578999 9999999


Q ss_pred             EecCCeEEEEEecCC-CCCceeeee--ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce--
Q 020107          214 GSYDEYLRVWDVRSI-SKPVNETSV--CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA--  288 (331)
Q Consensus       214 ~~~d~~i~iwd~~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--  288 (331)
                      +...+.|++||+|+. +.|...+..  +.....+.|.|+|+| ..++.+...+.+.+++-.+  +..+.++.++...-  
T Consensus       158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~--G~~~~tfs~~~~~~~~  234 (311)
T KOG1446|consen  158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFD--GTVKSTFSGYPNAGNL  234 (311)
T ss_pred             ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccC--CcEeeeEeeccCCCCc
Confidence            988889999999986 445554222  235678999999999 5556666677766666655  67888888765533  


Q ss_pred             -eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          289 -YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       289 -~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                       .+..|.|++         +++++|+ .||+|.+|+++++..
T Consensus       235 ~~~a~ftPds---------~Fvl~gs-~dg~i~vw~~~tg~~  266 (311)
T KOG1446|consen  235 PLSATFTPDS---------KFVLSGS-DDGTIHVWNLETGKK  266 (311)
T ss_pred             ceeEEECCCC---------cEEEEec-CCCcEEEEEcCCCcE
Confidence             578899999         7999999 999999999988753

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=2.9e-29  Score=215.22  Aligned_cols=261  Identities=18%  Similarity=0.248  Sum_probs=221.3

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI  103 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~  103 (331)
                      .++++++          .+++|++|+..... .+..-+.+|.+.|.++++...    +.+|++|+.|.++ +|+..++.+
T Consensus       219 ~~~~~~s----------~~~tl~~~~~~~~~-~i~~~l~GH~g~V~~l~~~~~----~~~lvsgS~D~t~rvWd~~sg~C  283 (537)
T KOG0274|consen  219 GFFKSGS----------DDSTLHLWDLNNGY-LILTRLVGHFGGVWGLAFPSG----GDKLVSGSTDKTERVWDCSTGEC  283 (537)
T ss_pred             CeEEecC----------CCceeEEeecccce-EEEeeccCCCCCceeEEEecC----CCEEEEEecCCcEEeEecCCCcE
Confidence            6788887          79999999999886 344436899999999999975    7799999999999 999998876


Q ss_pred             ------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107          104 ------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW  177 (331)
Q Consensus       104 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (331)
                            |.+.+.++...  ...+++|+.|.+|++|+++++..  +..+.+|..+|.++..+   +.++++|+.|++|++|
T Consensus       284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~--l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW  356 (537)
T KOG0274|consen  284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGAC--LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVW  356 (537)
T ss_pred             EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcce--EEEeccccccEEEEEec---CCEEEEEecCceEEEE
Confidence                  67888887764  35688889999999999998754  77788899999999986   5899999999999999


Q ss_pred             EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE
Q 020107          178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL  257 (331)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  257 (331)
                      |+++++++..+..   |...|+++.+.+ . ..+++|+.|++|++||+++..+++.. +..|.+-+..+.+..   ..++
T Consensus       357 ~~~~~~cl~sl~g---H~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~t-l~~h~~~v~~l~~~~---~~Lv  427 (537)
T KOG0274|consen  357 DPRTGKCLKSLSG---HTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHT-LQGHTSLVSSLLLRD---NFLV  427 (537)
T ss_pred             EhhhceeeeeecC---CcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhh-hcCCccccccccccc---ceeE
Confidence            9999999999888   999999998865 3 89999999999999999996345554 578888887777665   5788


Q ss_pred             EEEecCcEEEEEEcCcccceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107          258 AACMHNGFAVVKVGGEKAEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT  330 (331)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~  330 (331)
                      +++.++.+++|+...  ++.+.++.+ |...|+.+.+. +          ..+++++ .|+.+++||+.++...
T Consensus       428 s~~aD~~Ik~WD~~~--~~~~~~~~~~~~~~v~~l~~~-~----------~~il~s~-~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  428 SSSADGTIKLWDAEE--GECLRTLEGRHVGGVSALALG-K----------EEILCSS-DDGSVKLWDLRSGTLI  487 (537)
T ss_pred             eccccccEEEeeccc--CceeeeeccCCcccEEEeecC-c----------ceEEEEe-cCCeeEEEecccCchh
Confidence            888889899998877  688888888 77899999887 2          3677777 8999999999988654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=8.7e-29  Score=187.12  Aligned_cols=239  Identities=15%  Similarity=0.180  Sum_probs=197.8

Q ss_pred             eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC-c-------ccCccEEEEEEcCCCCeEEEEecCCeEEEEE
Q 020107           63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE-K-------ISSSMCLCLEWNPSATSITVGLSDGSVSIVS  133 (331)
Q Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~-~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  133 (331)
                      ....+.|.+|+|||..   ..++++++.||++ +|+++.. .       .+.++|.+++|+.+|..+++|+.|+++++||
T Consensus        24 ~pP~DsIS~l~FSP~~---~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQA---DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             CCcccchheeEecccc---CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence            4456779999999953   5577799999999 9999873 2       2689999999999999999999999999999


Q ss_pred             ccccceeeeeeeecccceeEEEeeCCCCCc--EEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107          134 VVESQLEVLQQWKAHEFELWATSFDVHQPH--MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      +.+++   +..+..|..+|..+.|-+ ...  .|++|+-|.+|+.||.|....+..++.    ...++++..-   ..++
T Consensus       101 L~S~Q---~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L----PeRvYa~Dv~---~pm~  169 (347)
T KOG0647|consen  101 LASGQ---VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL----PERVYAADVL---YPMA  169 (347)
T ss_pred             ccCCC---eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeec----cceeeehhcc---Ccee
Confidence            99986   456778999999999986 444  899999999999999999888877776    6788888774   4688


Q ss_pred             EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc-----
Q 020107          212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS-----  286 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----  286 (331)
                      +++..++.|.+|+++++.........+..-.+.+++..++.++. +.++-++.+.+..+.....+.-.+|+.|..     
T Consensus       170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~-alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~  248 (347)
T KOG0647|consen  170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF-ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN  248 (347)
T ss_pred             EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce-EeeeecceEEEEecCCCCccCceeEEEeccCCCCC
Confidence            88889999999999886555444445566678999999988554 677788888888888754567778888863     


Q ss_pred             ----ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          287 ----LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       287 ----~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                          +|.+++|+|.-         ..|+|+| .||+..+||-+.
T Consensus       249 ~~VYaVNsi~FhP~h---------gtlvTaG-sDGtf~FWDkda  282 (347)
T KOG0647|consen  249 DDVYAVNSIAFHPVH---------GTLVTAG-SDGTFSFWDKDA  282 (347)
T ss_pred             CceEEecceEeeccc---------ceEEEec-CCceEEEecchh
Confidence                57789999987         6999999 899999999654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.3e-29  Score=184.07  Aligned_cols=238  Identities=20%  Similarity=0.268  Sum_probs=189.6

Q ss_pred             CCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-ceEEeEeeecCcEeEEEEcC-CCCCCCCeEEEEcCCccE-EEe
Q 020107           21 DSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-NLELLYRMDTAGIFDIKWSP-VGGNAGPFLAQADADGGL-LRD   97 (331)
Q Consensus        21 ~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~   97 (331)
                      +-+|.+||+++          .|++|+||....+.. .+...+.+|.++|..++|.. ..   |.+||+++.||++ ||.
T Consensus        20 DyygkrlATcs----------SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~---G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen   20 DYYGKRLATCS----------SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKF---GTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhcceeeeec----------CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccccc---CcEeeEeecCceEEEEe
Confidence            34458999998          899999999987653 35555699999999999975 32   8899999999999 999


Q ss_pred             cCCCcc--------cCccEEEEEEcCC--CCeEEEEecCCeEEEEEcccc-ceeeeeeeecccceeEEEeeCCCC--C--
Q 020107           98 ITGEKI--------SSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVES-QLEVLQQWKAHEFELWATSFDVHQ--P--  162 (331)
Q Consensus        98 ~~~~~~--------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~--  162 (331)
                      -.+++-        |...|++++|.|.  |-.|++++.||.|.+.+.+.. .....+....|...|++++|.|..  +  
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            887643        7899999999985  457999999999999998875 444455667899999999999841  1  


Q ss_pred             ---------cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC---CCEEEEEecCCeEEEEEecCCCC
Q 020107          163 ---------HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD---SNTLLTGSYDEYLRVWDVRSISK  230 (331)
Q Consensus       163 ---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~  230 (331)
                               +.|++|+.|..|+||+...++-+..-. ..+|.+.|+.++|.|..   ..+||++++||++.||-.+....
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~-l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e  245 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT-LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE  245 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhh-hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence                     569999999999999998864322222 24599999999999943   35799999999999998875322


Q ss_pred             Cce-eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          231 PVN-ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       231 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      +.. ..+......++++.|++.+ ..|.+++.++.+.+|+-...
T Consensus       246 ~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  246 PWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             cccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeCCC
Confidence            222 2234577889999999998 78888888898888876554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.7e-28  Score=184.77  Aligned_cols=262  Identities=14%  Similarity=0.223  Sum_probs=210.8

Q ss_pred             EEEEEeecccCCCCCCCCCcEEEEeccCccc------c----eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-
Q 020107           26 VLAASTYTLQEGDKPSRNGSISLFNVNAEEK------N----LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-   94 (331)
Q Consensus        26 ~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~------~----~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-   94 (331)
                      .+++|+|          ...|.-+++....+      .    ....+..|.++|++++.+-.      ++|+|+.|-+| 
T Consensus         3 ~iIvGtY----------E~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~------~~aSGssDetI~   66 (362)
T KOG0294|consen    3 EIIVGTY----------EHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGP------YVASGSSDETIH   66 (362)
T ss_pred             eEEEeee----------eeEEEEEEeccCccccccccceeeeccccccccccceeEEEecce------eEeccCCCCcEE
Confidence            4778886          66777777654331      1    12234668999999999755      99999999999 


Q ss_pred             EEecCCCcc------cCccEEEEEEcCCCC--eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEE
Q 020107           95 LRDITGEKI------SSSMCLCLEWNPSAT--SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY  166 (331)
Q Consensus        95 iw~~~~~~~------~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  166 (331)
                      |+|+.....      |.+.|+++.|.+...  .|++|+.||.|.+|+..  .+..+..+++|...|+.++.+| .+++.+
T Consensus        67 IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~--~W~~~~slK~H~~~Vt~lsiHP-S~KLAL  143 (362)
T KOG0294|consen   67 IYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG--SWELLKSLKAHKGQVTDLSIHP-SGKLAL  143 (362)
T ss_pred             EEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC--CeEEeeeecccccccceeEecC-CCceEE
Confidence            999987654      689999999998765  79999999999999986  4577999999999999999999 889999


Q ss_pred             EEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEE
Q 020107          167 TGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRI  246 (331)
Q Consensus       167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  246 (331)
                      +.+.|+.+++||+-+++.......    ....+.+.|+| .|.+++.++.++ |-+|.+.+. ....+  ......+.++
T Consensus       144 sVg~D~~lr~WNLV~Gr~a~v~~L----~~~at~v~w~~-~Gd~F~v~~~~~-i~i~q~d~A-~v~~~--i~~~~r~l~~  214 (362)
T KOG0294|consen  144 SVGGDQVLRTWNLVRGRVAFVLNL----KNKATLVSWSP-QGDHFVVSGRNK-IDIYQLDNA-SVFRE--IENPKRILCA  214 (362)
T ss_pred             EEcCCceeeeehhhcCccceeecc----CCcceeeEEcC-CCCEEEEEeccE-EEEEecccH-hHhhh--hhccccceee
Confidence            999999999999999987766665    33445599999 899888888754 899999874 33433  3444678888


Q ss_pred             EECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          247 KHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      .|...  +.+++++.+..+.+++..+  ..+...+.+|...|-++.+-.+.       ...+|+|+| .||.|++||++.
T Consensus       215 ~~l~~--~~L~vG~d~~~i~~~D~ds--~~~~~~~~AH~~RVK~i~~~~~~-------~~~~lvTaS-SDG~I~vWd~~~  282 (362)
T KOG0294|consen  215 TFLDG--SELLVGGDNEWISLKDTDS--DTPLTEFLAHENRVKDIASYTNP-------EHEYLVTAS-SDGFIKVWDIDM  282 (362)
T ss_pred             eecCC--ceEEEecCCceEEEeccCC--CccceeeecchhheeeeEEEecC-------CceEEEEec-cCceEEEEEccc
Confidence            88776  7888888888877887776  57888899999999999854431       127999999 899999999987


Q ss_pred             c
Q 020107          327 D  327 (331)
Q Consensus       327 ~  327 (331)
                      .
T Consensus       283 ~  283 (362)
T KOG0294|consen  283 E  283 (362)
T ss_pred             c
Confidence            6

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=6.3e-29  Score=192.35  Aligned_cols=245  Identities=17%  Similarity=0.280  Sum_probs=194.9

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIV  132 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  132 (331)
                      ..+..|+..|++++.+|+    .+++++|+.|... +|++.++..      |+..|.++.|+.+|.+||+|.-+|.|+||
T Consensus        58 ~tF~~H~~svFavsl~P~----~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPN----NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             eehhhcCCceEEEEeCCC----CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence            345789999999999997    7899999999998 999998765      79999999999999999999999999999


Q ss_pred             EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107          133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL  212 (331)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  212 (331)
                      +..++..  ...+...-..+.-+.|+| ....|++|+.||.+-+|.+.++...+.+..   |..++++=.|.| +|+.++
T Consensus       134 ~~stg~~--~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~G---h~~~ct~G~f~p-dGKr~~  206 (399)
T KOG0296|consen  134 KVSTGGE--QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSG---HNSPCTCGEFIP-DGKRIL  206 (399)
T ss_pred             EcccCce--EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecC---CCCCcccccccC-CCceEE
Confidence            9998764  334433455688899999 889999999999999999998766777766   999999999999 999999


Q ss_pred             EEecCCeEEEEEecCCCCCceeeee--------------------------------------------------ecCCc
Q 020107          213 TGSYDEYLRVWDVRSISKPVNETSV--------------------------------------------------CLGGG  242 (331)
Q Consensus       213 ~~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------------------------~~~~~  242 (331)
                      ++..||+|++||+.++ +|+.....                                                  .+...
T Consensus       207 tgy~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~  285 (399)
T KOG0296|consen  207 TGYDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL  285 (399)
T ss_pred             EEecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence            9999999999999986 44433110                                                  01111


Q ss_pred             eEEEEECCCCC--CeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107          243 VWRIKHHPFIP--GLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR  320 (331)
Q Consensus       243 v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~  320 (331)
                      +.++.+.|...  .+.++++.++.+.+|++...   .++..-.|...|+.+.|-++          .+|+++. .||.|+
T Consensus       286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~---~~R~~c~he~~V~~l~w~~t----------~~l~t~c-~~g~v~  351 (399)
T KOG0296|consen  286 DESVESIPSSSKLPLAACGSVDGTIAIYDLAAS---TLRHICEHEDGVTKLKWLNT----------DYLLTAC-ANGKVR  351 (399)
T ss_pred             hhhhhhcccccccchhhcccccceEEEEecccc---hhheeccCCCceEEEEEcCc----------chheeec-cCceEE
Confidence            22233333211  23445556778888887763   33344468899999999994          4888888 899999


Q ss_pred             EEcCCCcccC
Q 020107          321 IWMPESDCLT  330 (331)
Q Consensus       321 iW~~~~~~~~  330 (331)
                      .||..+|.+.
T Consensus       352 ~wDaRtG~l~  361 (399)
T KOG0296|consen  352 QWDARTGQLK  361 (399)
T ss_pred             eeeccccceE
Confidence            9999999875

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=5.9e-30  Score=200.98  Aligned_cols=274  Identities=18%  Similarity=0.179  Sum_probs=224.5

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      ..++.+..|.|.+..   ..|++|+          .|..|++|+.......+...+.+..++|+++.|.++    +..++
T Consensus       173 ~h~gev~~v~~l~~s---dtlatgg----------~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~----~~~~i  235 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRNS---DTLATGG----------SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD----NKHVI  235 (459)
T ss_pred             ccccccceeEEccCc---chhhhcc----------hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC----CceEE
Confidence            356788899999887   7899998          799999999987764455566777889999999999    88999


Q ss_pred             EEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107           87 QADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (331)
                      +++.|+.+ +|++...+      .|...|+++.|......+++|+.|.+|++||+....  +.+++.. ...+..|..+ 
T Consensus       236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~--C~kt~l~-~S~cnDI~~~-  311 (459)
T KOG0288|consen  236 AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY--CSKTVLP-GSQCNDIVCS-  311 (459)
T ss_pred             eecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh--eeccccc-cccccceEec-
Confidence            99999999 99998654      389999999998877779999999999999998753  3554432 3346667665 


Q ss_pred             CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee--
Q 020107          160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV--  237 (331)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--  237 (331)
                        ...+++|..|++|++||+++..+......    .+.|+++..++ ++..+++++.|.++.+.|+++. ..... +.  
T Consensus       312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~----gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~-eI~~~-~sA~  382 (459)
T KOG0288|consen  312 --ISDVISGHFDKKVRFWDIRSADKTRSVPL----GGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTK-EIRQT-FSAE  382 (459)
T ss_pred             --ceeeeecccccceEEEeccCCceeeEeec----CcceeeEeecc-CCeEEeeecCCCceeeeecccc-cEEEE-eecc
Confidence              36789999999999999999988777776    45999999999 9999999999999999999984 22222 11  


Q ss_pred             --ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc--ceeeeeecCCCCcccccccCcEEEEee
Q 020107          238 --CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS--LAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       238 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                        ......+.+.|||++ .+++++++++.+++|.+..  +++...+.....  .|++++|+|.|         ..|++++
T Consensus       383 g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~t--gKlE~~l~~s~s~~aI~s~~W~~sG---------~~Llsad  450 (459)
T KOG0288|consen  383 GFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFT--GKLEKVLSLSTSNAAITSLSWNPSG---------SGLLSAD  450 (459)
T ss_pred             ccccccccceeEECCCC-ceeeeccCCCcEEEEEccC--ceEEEEeccCCCCcceEEEEEcCCC---------chhhccc
Confidence              223458899999997 7888888999999999988  466666664433  59999999999         6999999


Q ss_pred             cCCCeEEEEc
Q 020107          314 FYDRLLRIWM  323 (331)
Q Consensus       314 ~~d~~i~iW~  323 (331)
                       .++.+.+|.
T Consensus       451 -k~~~v~lW~  459 (459)
T KOG0288|consen  451 -KQKAVTLWT  459 (459)
T ss_pred             -CCcceEecC
Confidence             999999994

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.7e-29  Score=195.88  Aligned_cols=277  Identities=15%  Similarity=0.144  Sum_probs=210.3

Q ss_pred             eeecCcceeEeeecC----CCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCC
Q 020107            6 CELDGNADAVEFCPQ----DSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNA   81 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~----~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   81 (331)
                      +.+...+.|++|...    +..|+|+|+|+          -+..|.|||++-....+-.+.-+...       +..    
T Consensus       170 ~ilpafPLC~ewld~~~~~~~~gNyvAiGt----------mdp~IeIWDLDI~d~v~P~~~LGs~~-------sk~----  228 (463)
T KOG0270|consen  170 FILPAFPLCIEWLDHGSKSGGAGNYVAIGT----------MDPEIEIWDLDIVDAVLPCVTLGSKA-------SKK----  228 (463)
T ss_pred             eeccCcchhhhhhhcCCCCCCCcceEEEec----------cCceeEEeccccccccccceeechhh-------hhh----
Confidence            345667789999766    34468999999          58899999997644211111111000       000    


Q ss_pred             CCeEEEEcCCccEEEecCCCcccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           82 GPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        82 ~~~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                         .--.      -..-.....|...|.+++|+..- +.||+|+.|.+|.+||+.++++  ...+..|...|.++.|+|.
T Consensus       229 ---~~k~------~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p--~~s~~~~~k~Vq~l~wh~~  297 (463)
T KOG0270|consen  229 ---KKKK------GKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP--KSSITHHGKKVQTLEWHPY  297 (463)
T ss_pred             ---hhhh------cccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc--ceehhhcCCceeEEEecCC
Confidence               0000      00001123366677778777644 4689999999999999999865  6777789999999999999


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCC-ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESP-FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL  239 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  239 (331)
                      .+..|++|+.|++|.+.|.|... .-..++.    .+.|-.++|.|.....++++..||+|+-+|+|+..+++.+ ...|
T Consensus       298 ~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~----~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt-~~AH  372 (463)
T KOG0270|consen  298 EPSVLLSGSYDGTVALKDCRDPSNSGKEWKF----DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT-LKAH  372 (463)
T ss_pred             CceEEEeccccceEEeeeccCccccCceEEe----ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE-EEec
Confidence            99999999999999999999533 2345554    7789999999988899999999999999999998888877 7899


Q ss_pred             CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107          240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL  319 (331)
Q Consensus       240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i  319 (331)
                      .++|.++++++..++++.+++.+..+++|++...+++.+....-.-+...++++.|+-+        .++|.|| ..+.+
T Consensus       373 d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a--------~~la~GG-~k~~~  443 (463)
T KOG0270|consen  373 DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVA--------FTLAFGG-EKAVL  443 (463)
T ss_pred             cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcc--------eEEEecC-ccceE
Confidence            99999999999998999999999999999998876655544333334466788888876        7899999 88899


Q ss_pred             EEEcCCCcc
Q 020107          320 RIWMPESDC  328 (331)
Q Consensus       320 ~iW~~~~~~  328 (331)
                      +|||+.+..
T Consensus       444 ~vwd~~~~~  452 (463)
T KOG0270|consen  444 RVWDIFTNS  452 (463)
T ss_pred             EEeecccCh
Confidence            999987753

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=7.3e-28  Score=202.46  Aligned_cols=287  Identities=15%  Similarity=0.223  Sum_probs=232.4

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-------eEEeEeeecCcEeEEEEcCCCC
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-------LELLYRMDTAGIFDIKWSPVGG   79 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~   79 (331)
                      .....+.++.|.|.....+.|+.-           .++.+.+|.++.....       -.....+|...|.++++|.+  
T Consensus       318 r~~~kiks~dv~~~~~~~~~lv~l-----------~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d--  384 (888)
T KOG0306|consen  318 RTSAKIKSFDVTPSGGTENTLVLL-----------ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD--  384 (888)
T ss_pred             echhheeEEEEEecCCcceeEEEe-----------ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC--
Confidence            445567888998887655556654           4889999988762211       12345689999999999999  


Q ss_pred             CCCCeEEEEcCCccEEEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           80 NAGPFLAQADADGGLLRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        80 ~~~~~l~~~~~dg~iiw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                        ...+++|+.+...+|+..+.++    ....+.+..|.|.++++++|...|.+.+||+.....  +...++|++.++++
T Consensus       385 --~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l--~Eti~AHdgaIWsi  460 (888)
T KOG0306|consen  385 --SILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL--VETIRAHDGAIWSI  460 (888)
T ss_pred             --ceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhh--hhhhhccccceeee
Confidence              6677777666666999998776    345788999999999999999999999999998754  67778999999999


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCC-----Cceeeeecc----cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRES-----PFKLAFQNS----KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR  226 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~  226 (331)
                      +.+| ++..+++|+.|.+|++||..--     ...+.+...    -.-...|.|+.++| ++.+|+++-.|.++++|-+.
T Consensus       461 ~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflD  538 (888)
T KOG0306|consen  461 SLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLD  538 (888)
T ss_pred             eecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEec
Confidence            9999 8899999999999999998531     111112110    00256799999999 99999999999999999999


Q ss_pred             CCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccC
Q 020107          227 SISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKN  306 (331)
Q Consensus       227 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  306 (331)
                      +.+--+.  +.+|.-||.++..+|++ .++++++.|..+++|-+.-  +.+-..+-+|...|.++.|.|..         
T Consensus       539 tlKFfls--LYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdF--GDCHKS~fAHdDSvm~V~F~P~~---------  604 (888)
T KOG0306|consen  539 TLKFFLS--LYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDF--GDCHKSFFAHDDSVMSVQFLPKT---------  604 (888)
T ss_pred             ceeeeee--ecccccceeEEeccCCc-CeEEeccCCCceEEecccc--chhhhhhhcccCceeEEEEcccc---------
Confidence            8643333  58999999999999997 7778888888888888776  68888899999999999999987         


Q ss_pred             cEEEEeecCCCeEEEEcCCCc
Q 020107          307 SLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       307 ~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .++.|+| .|+.|+-||-++-
T Consensus       605 ~~FFt~g-KD~kvKqWDg~kF  624 (888)
T KOG0306|consen  605 HLFFTCG-KDGKVKQWDGEKF  624 (888)
T ss_pred             eeEEEec-CcceEEeechhhh
Confidence            7999999 9999999986653

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=2.3e-27  Score=204.26  Aligned_cols=222  Identities=12%  Similarity=0.077  Sum_probs=164.8

Q ss_pred             EcCCccE-EEecCCC------cccCccEEEEEEcCC-CCeEEEEecCCeEEEEEccccce------eeeeeeecccceeE
Q 020107           88 ADADGGL-LRDITGE------KISSSMCLCLEWNPS-ATSITVGLSDGSVSIVSVVESQL------EVLQQWKAHEFELW  153 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~------~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~v~  153 (331)
                      |+.++.+ +|+....      ..|...|.+++|+|+ +++|++|+.||.|++||+.++..      .++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            3445555 7765442      237889999999997 78999999999999999976421      23456788999999


Q ss_pred             EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCce
Q 020107          154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVN  233 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  233 (331)
                      +++|+|....++++++.|+.|++||+++++....+.    |...|.+++|+| ++.+|++++.|+.|++||++++ ..+.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg-~~i~  203 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQ-EIAS  203 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCC-cEEE
Confidence            999999554567899999999999999887554443    567899999999 9999999999999999999985 4444


Q ss_pred             eeeeecCCceEE-----EEECCCCCCeEEEEEecC----cEEEEEEcCcccceeEEee--cCCcceeeeeecCCCCcccc
Q 020107          234 ETSVCLGGGVWR-----IKHHPFIPGLVLAACMHN----GFAVVKVGGEKAEVLETYA--KHGSLAYGADWQRGRSSLEG  302 (331)
Q Consensus       234 ~~~~~~~~~v~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~  302 (331)
                      . +..|.+.+..     ..|++++ ..++++|.++    .+++|++... .+.+..+.  .+.+.+......+++     
T Consensus       204 t-l~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~-~~pl~~~~ld~~~~~L~p~~D~~tg-----  275 (568)
T PTZ00420        204 S-FHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNT-TSALVTMSIDNASAPLIPHYDESTG-----  275 (568)
T ss_pred             E-EecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCC-CCceEEEEecCCccceEEeeeCCCC-----
Confidence            3 4678776533     3345775 6777777664    5899998864 34444433  333333333333444     


Q ss_pred             cccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          303 KRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       303 ~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                          .++++|+ .|+.|++|++..+.
T Consensus       276 ----~l~lsGk-GD~tIr~~e~~~~~  296 (568)
T PTZ00420        276 ----LIYLIGK-GDGNCRYYQHSLGS  296 (568)
T ss_pred             ----CEEEEEE-CCCeEEEEEccCCc
Confidence                6888998 89999999997664

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.7e-29  Score=183.80  Aligned_cols=254  Identities=16%  Similarity=0.200  Sum_probs=202.3

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc---------ccCccEEEEEEcC--CCCeEEEEec
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK---------ISSSMCLCLEWNP--SATSITVGLS  125 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~---------~~~~~v~~~~~~~--~~~~l~~~~~  125 (331)
                      +..+...|...|.++...--    ++.||+++.|+++ |+.++...         .|.++|..++|..  .|.+||+++.
T Consensus         3 ~q~idt~H~D~IHda~lDyy----gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY   78 (299)
T KOG1332|consen    3 MQTIDTQHEDMIHDAQLDYY----GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY   78 (299)
T ss_pred             ceehhhhhhhhhhHhhhhhh----cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeec
Confidence            44556778888888888777    8899999999999 88776544         2799999999976  8999999999


Q ss_pred             CCeEEEEEccccceeeeeeeecccceeEEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe
Q 020107          126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI  204 (331)
Q Consensus       126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  204 (331)
                      ||.|.||.-+.+++........|...|++++|.|++ +-.|++++.||.|.|.+.+....-..-.....|.-.|++++|.
T Consensus        79 DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswa  158 (299)
T KOG1332|consen   79 DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWA  158 (299)
T ss_pred             CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeec
Confidence            999999999999887788888999999999999965 4578889999999999998752111111123499999999999


Q ss_pred             cCC--C-----------CEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC---CCeEEEEEecCcEEEE
Q 020107          205 PSD--S-----------NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI---PGLVLAACMHNGFAVV  268 (331)
Q Consensus       205 ~~~--~-----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~  268 (331)
                      |..  +           +.|++|+.|..|+||+..+..-.+...+..|...|..++|.|.-   ...+++++.|+.+.+|
T Consensus       159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw  238 (299)
T KOG1332|consen  159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW  238 (299)
T ss_pred             CcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence            831  2           56999999999999999986444445578999999999999964   2356666677888888


Q ss_pred             EEcCcccc-eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          269 KVGGEKAE-VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       269 ~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      ....+..+ ....+......++.+.||+.+         ++|+.++ .|+.|.+|.-+
T Consensus       239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sG---------n~LaVs~-GdNkvtlwke~  286 (299)
T KOG1332|consen  239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSG---------NILAVSG-GDNKVTLWKEN  286 (299)
T ss_pred             EecCccCcccccccccCCcceEEEEEeccc---------cEEEEec-CCcEEEEEEeC
Confidence            88754222 222334456789999999999         6888888 89999999854

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3e-28  Score=212.56  Aligned_cols=287  Identities=15%  Similarity=0.149  Sum_probs=219.5

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc----------ceEEeEeeecCcEeEEEEcCCCC
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK----------NLELLYRMDTAGIFDIKWSPVGG   79 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~   79 (331)
                      ..+.+|..+|++   ..+|+|+..        .||.++||+.+.-..          +.......|.+.|+|+.|+|+  
T Consensus        14 ~~IfSIdv~pdg---~~~aTgGq~--------~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d--   80 (942)
T KOG0973|consen   14 KSIFSIDVHPDG---VKFATGGQV--------LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD--   80 (942)
T ss_pred             eeEEEEEecCCc---eeEecCCcc--------ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC--
Confidence            346677777776   899999732        477888999754210          122334568899999999999  


Q ss_pred             CCCCeEEEEcCCccE-EEecCCC------------------------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEc
Q 020107           80 NAGPFLAQADADGGL-LRDITGE------------------------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSV  134 (331)
Q Consensus        80 ~~~~~l~~~~~dg~i-iw~~~~~------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  134 (331)
                        +++||+|++|..+ +|.....                        ..|...|..++|+|++.+|++++.|++|.+|+.
T Consensus        81 --G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~  158 (942)
T KOG0973|consen   81 --GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA  158 (942)
T ss_pred             --CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc
Confidence              9999999999999 9988730                        116888999999999999999999999999999


Q ss_pred             cccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc---cCCCcceEEEEEecCCCCEE
Q 020107          135 VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS---KIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l  211 (331)
                      .+.  ..+..+++|...|-.+.|.| -+++|++-+.|++|++|++........+...   .+-....+.+.|+| +|.+|
T Consensus       159 ~tF--~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~l  234 (942)
T KOG0973|consen  159 KTF--ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHL  234 (942)
T ss_pred             ccc--eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCee
Confidence            877  55889999999999999999 8899999999999999997765554444431   12345688999999 99999


Q ss_pred             EEEec----CCeEEEEEecCCCCCceeeeeecCCceEEEEECCC----CCC-----------eEEEEE-ecCcEEEEEEc
Q 020107          212 LTGSY----DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF----IPG-----------LVLAAC-MHNGFAVVKVG  271 (331)
Q Consensus       212 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~-----------~~~~~~-~~~~~~~~~~~  271 (331)
                      ++...    -.++.|.+-.+.+...  .+.+|.+++.+++|+|.    ...           .++|.| .|..+.+|...
T Consensus       235 as~nA~n~~~~~~~IieR~tWk~~~--~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~  312 (942)
T KOG0973|consen  235 ASPNAVNGGKSTIAIIERGTWKVDK--DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA  312 (942)
T ss_pred             cchhhccCCcceeEEEecCCceeee--eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence            98642    3468888776653333  35899999999999982    001           144444 55666677664


Q ss_pred             CcccceeEEee-cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          272 GEKAEVLETYA-KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       272 ~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      .  .+++.... -....|.+++|+|||         ..|..|| .||+|.+..++...+
T Consensus       313 ~--~RPl~vi~~lf~~SI~DmsWspdG---------~~LfacS-~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  313 L--PRPLFVIHNLFNKSIVDMSWSPDG---------FSLFACS-LDGTVALIHFEEKEL  359 (942)
T ss_pred             C--CCchhhhhhhhcCceeeeeEcCCC---------CeEEEEe-cCCeEEEEEcchHHh
Confidence            4  34444433 235689999999999         6888999 999999999887643

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=7.7e-29  Score=199.61  Aligned_cols=271  Identities=15%  Similarity=0.155  Sum_probs=220.5

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeEee-ecCcEeEEEEcCCCCCCCCeEEE
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLYRM-DTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      -+..+..+...   +.+.+|+           .|.|+|||+.....  ++..+-.. ...-|+++...|+    ++.|++
T Consensus       421 vVcAvtIS~~t---rhVyTgG-----------kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd----grtLiv  482 (705)
T KOG0639|consen  421 VVCAVTISNPT---RHVYTGG-----------KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD----GRTLIV  482 (705)
T ss_pred             EEEEEEecCCc---ceeEecC-----------CCeEEEeeccCCCCCCccccccccCcccceeeeEecCC----CceEEe
Confidence            34455555554   7888887           99999999986532  23333221 2345999999999    999999


Q ss_pred             EcCCccE-EEecCCCccc--------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107           88 ADADGGL-LRDITGEKIS--------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  158 (331)
                      |++-.++ |||+.....+        .-.+++++.+||.+..++++.||.|.|||+.....  ++.|++|...+.|+..+
T Consensus       483 GGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~--VrqfqGhtDGascIdis  560 (705)
T KOG0639|consen  483 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL--VRQFQGHTDGASCIDIS  560 (705)
T ss_pred             ccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee--eecccCCCCCceeEEec
Confidence            9998888 9999876542        34577899999999999999999999999997644  89999999999999999


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC  238 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  238 (331)
                      + ++..|-+|+-|.+||-||+|+++.......    ...|.++.++| ++.++++|-+++.+.+.......   ...+..
T Consensus       561 ~-dGtklWTGGlDntvRcWDlregrqlqqhdF----~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~---kyqlhl  631 (705)
T KOG0639|consen  561 K-DGTKLWTGGLDNTVRCWDLREGRQLQQHDF----SSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPE---KYQLHL  631 (705)
T ss_pred             C-CCceeecCCCccceeehhhhhhhhhhhhhh----hhhheecccCC-CccceeeecccCcEEEEecCCcc---ceeecc
Confidence            7 889999999999999999999887666554    77899999999 99999999999999888776532   222478


Q ss_pred             cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107          239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL  318 (331)
Q Consensus       239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~  318 (331)
                      |...|.++.|.+.| ..++++|.|+-+..|+..-  +..++..+. .+.|.+++.+.++         ++|+||+ .|..
T Consensus       632 heScVLSlKFa~cG-kwfvStGkDnlLnawrtPy--GasiFqskE-~SsVlsCDIS~dd---------kyIVTGS-Gdkk  697 (705)
T KOG0639|consen  632 HESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPY--GASIFQSKE-SSSVLSCDISFDD---------KYIVTGS-GDKK  697 (705)
T ss_pred             cccEEEEEEecccC-ceeeecCchhhhhhccCcc--ccceeeccc-cCcceeeeeccCc---------eEEEecC-CCcc
Confidence            99999999999998 7888888988766776654  555665554 6789999999998         7999999 8988


Q ss_pred             EEEEcC
Q 020107          319 LRIWMP  324 (331)
Q Consensus       319 i~iW~~  324 (331)
                      -.+|.+
T Consensus       698 ATVYeV  703 (705)
T KOG0639|consen  698 ATVYEV  703 (705)
T ss_pred             eEEEEE
Confidence            888865

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.2e-27  Score=181.59  Aligned_cols=237  Identities=20%  Similarity=0.261  Sum_probs=193.4

Q ss_pred             eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107           64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES  137 (331)
Q Consensus        64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  137 (331)
                      .....|.+|.|+|.    ...|++++.||.+ +++......     +..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus        11 pP~d~IS~v~f~~~----~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   11 PPEDGISSVKFSPS----SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             CChhceeeEEEcCc----CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence            34577999999988    7788888899999 998877654     689999999986 567999999999999999987


Q ss_pred             ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107          138 QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD  217 (331)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  217 (331)
                      ..   ..+..|..++.++.+.+ ..+.+++|+-|++|++||.|.......+..    ...|.++..   .++.|++|+.|
T Consensus        86 ~~---~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~----~kkVy~~~v---~g~~LvVg~~~  154 (323)
T KOG1036|consen   86 NE---DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQ----GKKVYCMDV---SGNRLVVGTSD  154 (323)
T ss_pred             cc---eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccccccccc----CceEEEEec---cCCEEEEeecC
Confidence            53   45667999999999998 778999999999999999998555545543    558999987   56899999999


Q ss_pred             CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc--ccceeEEeecCCc---------
Q 020107          218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE--KAEVLETYAKHGS---------  286 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~---------  286 (331)
                      ..+.+||+|+...+.........-.+.++++.|++.+ +++++-++++.+=.+...  ..+....|+.|..         
T Consensus       155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             ceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            9999999999887775545667788999999997644 556667787655444443  1345566777753         


Q ss_pred             ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      +|.+++|+|-.         +.||||| .||.|.+||+.+.
T Consensus       234 PVNai~Fhp~~---------~tfaTgG-sDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  234 PVNAIAFHPIH---------GTFATGG-SDGIVNIWDLFNR  264 (323)
T ss_pred             EeceeEecccc---------ceEEecC-CCceEEEccCcch
Confidence            79999999997         6999999 9999999999765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.97  E-value=2.9e-28  Score=189.57  Aligned_cols=266  Identities=17%  Similarity=0.254  Sum_probs=195.7

Q ss_pred             eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107            4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      ..+.+.+.+..|+-.+.+   +-.+++++.        ..|.|+||++...-   ..+ ......+....+.|-      
T Consensus       146 ~~i~h~g~~NRvr~~~~~---~~~~~asws--------e~G~V~Vw~l~~~l---~~l-~~~~~~~~~s~~~Pl------  204 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLG---NEVLCASWS--------ENGRVQVWDLAPHL---NAL-SEPGLEVKDSEFRPL------  204 (440)
T ss_pred             cccccccccceeeecccC---Ccceeeeec--------ccCcEEEEEchhhh---hhh-cCccccccccccCce------
Confidence            344556677778777776   333333332        89999999987642   211 111111222111111      


Q ss_pred             eEEEEcCCccEEEecCCCcccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceee-eeeeecccceeEEEeeCCCC
Q 020107           84 FLAQADADGGLLRDITGEKISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEV-LQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        84 ~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~  161 (331)
                                  +   +...|...-+.++|+|-. ..|++|..-+.|++|...++.+.. ...+.+|...|..++|+|..
T Consensus       205 ------------~---t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE  269 (440)
T KOG0302|consen  205 ------------F---TFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE  269 (440)
T ss_pred             ------------E---EecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCcc
Confidence                        1   112244556788899833 348888888899999999877632 23466799999999999988


Q ss_pred             CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC--CCCceeeeeec
Q 020107          162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI--SKPVNETSVCL  239 (331)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~  239 (331)
                      ...|++|+.||+|+|||+|.+.....+.. ++|.+.|+.|.|+. +..+||+|+.||+++|||+|+.  .+|+.. +..|
T Consensus       270 ~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~-fk~H  346 (440)
T KOG0302|consen  270 DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVAT-FKYH  346 (440)
T ss_pred             CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCccee-EEec
Confidence            89999999999999999999865544444 66999999999998 7679999999999999999974  355665 6899


Q ss_pred             CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-----------------cceeEEeecCCcceeeeeecCCCCcccc
Q 020107          240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-----------------AEVLETYAKHGSLAYGADWQRGRSSLEG  302 (331)
Q Consensus       240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~  302 (331)
                      ..+|++|.|+|.....++++|.|+.+.+|++.-..                 +++++...+ ...+-.+.|++..+    
T Consensus       347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiP----  421 (440)
T KOG0302|consen  347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIP----  421 (440)
T ss_pred             cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhheeccCCC----
Confidence            99999999999988999999999999999996432                 223333333 44688899999998    


Q ss_pred             cccCcEEEEeecCCCe
Q 020107          303 KRKNSLVATCSFYDRL  318 (331)
Q Consensus       303 ~~~~~~l~s~~~~d~~  318 (331)
                          .+|++.+ .||.
T Consensus       422 ----G~lvsTa-~dGf  432 (440)
T KOG0302|consen  422 ----GLLVSTA-IDGF  432 (440)
T ss_pred             ----CeEEEec-ccce
Confidence                8999998 7875

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=4.6e-28  Score=195.59  Aligned_cols=251  Identities=14%  Similarity=0.121  Sum_probs=200.3

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEEcCCCCeEEEEecCC
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEWNPSATSITVGLSDG  127 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~dg  127 (331)
                      ..+++|+..|.++++.|.    |..|++|+.|-.+ +||......           ....|.+++|++.+..|++.+...
T Consensus       161 i~l~hgtk~Vsal~~Dp~----GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPS----GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             EeccCCceEEEEeeecCC----CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence            344667888999999999    9999999999999 999987532           366789999999999999999999


Q ss_pred             eEEEEEccccce----------eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeec--ccCC
Q 020107          128 SVSIVSVVESQL----------EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQN--SKIH  194 (331)
Q Consensus       128 ~i~i~d~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~--~~~~  194 (331)
                      ..+++|-....+          ..+..-++|...+++.+|+|.+...+++++.||++|+||+...+. .+++..  ..+.
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            999999765322          012223679999999999998889999999999999999987543 333433  1234


Q ss_pred             CcceEEEEEecCCCCEEEEEecCCeEEEEEecCC-CCCceeeeeecCC--ceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107          195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI-SKPVNETSVCLGG--GVWRIKHHPFIPGLVLAACMHNGFAVVKVG  271 (331)
Q Consensus       195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (331)
                      .-+++.++|+| ++++||+|+.||.|.+||.++. ..+......+|..  .|++|.|++++ ++|++-|.|+.+++|+++
T Consensus       317 Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  317 RVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             ccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeecc
Confidence            55789999999 9999999999999999998664 2344444568877  89999999998 888999999999999999


Q ss_pred             CcccceeEEeecC--CcceeeeeecCCCCcccccccCcEEEEeec-----CCCeEEEEcCCC
Q 020107          272 GEKAEVLETYAKH--GSLAYGADWQRGRSSLEGKRKNSLVATCSF-----YDRLLRIWMPES  326 (331)
Q Consensus       272 ~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-----~d~~i~iW~~~~  326 (331)
                      .. .+++.+..+-  .-+-+.++|||+.         ++|++|.+     ..|.+.++|.-+
T Consensus       395 q~-kkpL~~~tgL~t~~~~tdc~FSPd~---------kli~TGtS~~~~~~~g~L~f~d~~t  446 (641)
T KOG0772|consen  395 QF-KKPLNVRTGLPTPFPGTDCCFSPDD---------KLILTGTSAPNGMTAGTLFFFDRMT  446 (641)
T ss_pred             cc-ccchhhhcCCCccCCCCccccCCCc---------eEEEecccccCCCCCceEEEEeccc
Confidence            87 4555555542  2356789999998         79999864     346788888654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.96  E-value=2.3e-27  Score=188.85  Aligned_cols=289  Identities=18%  Similarity=0.284  Sum_probs=213.0

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLYRMDTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~   84 (331)
                      .+.+.+.+++|+|..+ ..++|+|.          ..|.|-+||+..++.  .-..++..|..+|.+|.|+|.+   ...
T Consensus       184 v~~~Rit~l~fHPt~~-~~lva~Gd----------K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n---~s~  249 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTEN-RKLVAVGD----------KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN---TSQ  249 (498)
T ss_pred             ecccceEEEEecccCc-ceEEEEcc----------CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC---hhh
Confidence            4567899999999874 25888887          899999999963321  2334557789999999999997   569


Q ss_pred             EEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           85 LAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        85 l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      +++.+.||++ +-|+++...        ....+.++.|+.+...++.+..=|...+||++++.- ....+..|...|+.+
T Consensus       250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s-~~~~~~lh~kKI~sv  328 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS-EYENLRLHKKKITSV  328 (498)
T ss_pred             eeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc-cchhhhhhhccccee
Confidence            9999999999 666655432        345567788888888888888888999999998653 244556788899999


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCceee--eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec---CCCC
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLA--FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR---SISK  230 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~  230 (331)
                      +++|..+.++++++.|++++|||+|.-.....  +.. -.|...|.+..|+|.++ .|+|.+.|..|+|||..   ....
T Consensus       329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst-~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~dss~~sa~~~  406 (498)
T KOG4328|consen  329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST-LPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVFDSSCISAKDE  406 (498)
T ss_pred             ecCCCCchheeecccCcceeeeehhhhcCCCCcceec-ccccceeeeeEEcCCCC-ceEeeccCCceEEeecccccccCC
Confidence            99999999999999999999999997554442  333 34999999999999445 49999999999999984   3234


Q ss_pred             CceeeeeecCC------ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc-ceee-eeecCCCCcccc
Q 020107          231 PVNETSVCLGG------GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS-LAYG-ADWQRGRSSLEG  302 (331)
Q Consensus       231 ~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~-~~~~~~~~~~~~  302 (331)
                      +...  ..|..      .....+|.|+. .+++++-....|-+++-..  ++.+..+..... .|.+ ..|+|-+     
T Consensus       407 p~~~--I~Hn~~t~RwlT~fKA~W~P~~-~li~vg~~~r~IDv~~~~~--~q~v~el~~P~~~tI~~vn~~HP~~-----  476 (498)
T KOG4328|consen  407 PLGT--IPHNNRTGRWLTPFKAAWDPDY-NLIVVGRYPRPIDVFDGNG--GQMVCELHDPESSTIPSVNEFHPMR-----  476 (498)
T ss_pred             ccce--eeccCcccccccchhheeCCCc-cEEEEeccCcceeEEcCCC--CEEeeeccCccccccccceeecccc-----
Confidence            5555  44443      24567999974 5555554555544444333  455666544332 4544 4889987     


Q ss_pred             cccCcEEEEeecCCCeEEEEcCCC
Q 020107          303 KRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       303 ~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                          ..+++|+...|.|+||.-+.
T Consensus       477 ----~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  477 ----DTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             ----cceeccCCccceEEEEecCC
Confidence                44666664889999997554

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.3e-28  Score=205.90  Aligned_cols=240  Identities=18%  Similarity=0.240  Sum_probs=189.4

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccC--------------------------------c
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNA--------------------------------E   54 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~--------------------------------~   54 (331)
                      .+.+.|.++.|++++   .|||+|+          +||.|+||.+..                                .
T Consensus       265 ah~gaIw~mKFS~DG---KyLAsaG----------eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~  331 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDG---KYLASAG----------EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK  331 (712)
T ss_pred             ccCCcEEEEEeCCCC---ceeeecC----------CCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence            456778888888877   9999999          899999999866                                0


Q ss_pred             cc--------------------------ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----
Q 020107           55 EK--------------------------NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----  103 (331)
Q Consensus        55 ~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----  103 (331)
                      ..                          .....+.+|.+.|.++.||.++     +|++++.|.++ ||.+....+    
T Consensus       332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-----fLLSSSMDKTVRLWh~~~~~CL~~F  406 (712)
T KOG0283|consen  332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-----FLLSSSMDKTVRLWHPGRKECLKVF  406 (712)
T ss_pred             ccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-----eeEeccccccEEeecCCCcceeeEE
Confidence            00                          0112347899999999999874     99999999999 999998876    


Q ss_pred             -cCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107          104 -SSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE  181 (331)
Q Consensus       104 -~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  181 (331)
                       |..-|+|++|+| |.+++++|+-||.|+||++...+.   ..+..-..-|++++|.| +++..+.|+.+|.+++|+.+.
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V---v~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~  482 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV---VDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEG  482 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCee---EeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccC
Confidence             899999999999 778999999999999999987654   33333447899999999 799999999999999999987


Q ss_pred             CCceeeeecc-----cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec--CCceEEEEECCCCCC
Q 020107          182 SPFKLAFQNS-----KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL--GGGVWRIKHHPFIPG  254 (331)
Q Consensus       182 ~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~  254 (331)
                      .+....+...     +.....|+.+.|.|.+...+++.+.|..|||||.+.. .++.. +.++  ...-....|+.++ .
T Consensus       483 lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~K-fKG~~n~~SQ~~Asfs~Dg-k  559 (712)
T KOG0283|consen  483 LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHK-FKGFRNTSSQISASFSSDG-K  559 (712)
T ss_pred             CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhh-hcccccCCcceeeeEccCC-C
Confidence            7654443330     1112379999999977777888899999999999763 33333 2332  2334567889987 7


Q ss_pred             eEEEEEecCcEEEEEEc
Q 020107          255 LVLAACMHNGFAVVKVG  271 (331)
Q Consensus       255 ~~~~~~~~~~~~~~~~~  271 (331)
                      .+++++.|..+++|++.
T Consensus       560 ~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  560 HIVSASEDSWVYIWKND  576 (712)
T ss_pred             EEEEeecCceEEEEeCC
Confidence            78888888899999973

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.2e-28  Score=191.41  Aligned_cols=244  Identities=15%  Similarity=0.150  Sum_probs=193.4

Q ss_pred             eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107            5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   84 (331)
                      ..++.+|...|.+..++|+.++|++++          .+..+.+||+.++. .......++...+.+++|.|+    +..
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg----------~~e~~~lwDv~tgd-~~~~y~~~~~~S~~sc~W~pD----g~~  326 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACG----------FDEVLSLWDVDTGD-LRHLYPSGLGFSVSSCAWCPD----GFR  326 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecC----------chHheeeccCCcch-hhhhcccCcCCCcceeEEccC----Cce
Confidence            346677666666555555557766665          47789999999987 444444455678999999999    999


Q ss_pred             EEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEee
Q 020107           85 LAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSF  157 (331)
Q Consensus        85 l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  157 (331)
                      +++|+.|+.+ .|++.....      ....|.+++..+||+++++.+.|..|++++.++...  .... ....+|+++..
T Consensus       327 ~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--r~li-se~~~its~~i  403 (519)
T KOG0293|consen  327 FVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--RGLI-SEEQPITSFSI  403 (519)
T ss_pred             eEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh--hccc-cccCceeEEEE
Confidence            9999999999 999987544      235589999999999999999999999999987432  2222 34568999999


Q ss_pred             CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcc--eEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107          158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMG--VCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  235 (331)
                      +. +++++++--.+..+++||+...+.+..+.+   |...  +..-+|--.+..++++|++|+.|+||+..++ +++.. 
T Consensus       404 S~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~G---hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~-  477 (519)
T KOG0293|consen  404 SK-DGKLALVNLQDQEIHLWDLEENKLVRKYFG---HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAV-  477 (519)
T ss_pred             cC-CCcEEEEEcccCeeEEeecchhhHHHHhhc---ccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEe-
Confidence            96 889999988999999999997776666666   5433  3344555446789999999999999999985 66665 


Q ss_pred             eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      +.+|...|++++|+|..+.++++++.|+++++|...+
T Consensus       478 LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  478 LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            6899999999999999988888888889888887764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.1e-28  Score=200.28  Aligned_cols=272  Identities=15%  Similarity=0.230  Sum_probs=216.6

Q ss_pred             CCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc----ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-E
Q 020107           21 DSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK----NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-L   95 (331)
Q Consensus        21 ~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-i   95 (331)
                      -|.+++|.+|+          +||.|++|+......    +.......|...|+++....+    ++.|++++.|-++ +
T Consensus        34 a~~~ryLfTgG----------RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~----~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   34 APNGRYLFTGG----------RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN----GKTLISASSDTTVKV   99 (735)
T ss_pred             CCCCceEEecC----------CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC----CCceEEecCCceEEE
Confidence            34557899998          899999999876542    223334678999999999988    8899999999999 9


Q ss_pred             EecCCCc--------ccCccEEEEEE-cCCCCeEEEEecCCeEEEEEccccce--------eeeeeee-cccceeEEEee
Q 020107           96 RDITGEK--------ISSSMCLCLEW-NPSATSITVGLSDGSVSIVSVVESQL--------EVLQQWK-AHEFELWATSF  157 (331)
Q Consensus        96 w~~~~~~--------~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~-~~~~~v~~~~~  157 (331)
                      |+.....        .|...|.|+++ .++...+|+|+-|+.|.+||++++..        .....+. ++...|++++.
T Consensus       100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~  179 (735)
T KOG0308|consen  100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM  179 (735)
T ss_pred             eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence            9887653        48899999999 77888899999999999999997521        1122233 77889999999


Q ss_pred             CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee
Q 020107          158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV  237 (331)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  237 (331)
                      ++ .+..+++|+..+.|++||.++.+.+..++.   |...|..+..++ +|+.+++++.||+|++||+... +++.. +.
T Consensus       180 N~-t~t~ivsGgtek~lr~wDprt~~kimkLrG---HTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQ-rCl~T-~~  252 (735)
T KOG0308|consen  180 NQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRG---HTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQ-RCLAT-YI  252 (735)
T ss_pred             CC-cceEEEecCcccceEEeccccccceeeeec---cccceEEEEEcC-CCCeEeecCCCceEEeeecccc-ceeee-EE
Confidence            97 778999999999999999999987777776   999999999999 9999999999999999999984 66666 68


Q ss_pred             ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107          238 CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR  317 (331)
Q Consensus       238 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~  317 (331)
                      .|...|+++..+|+- ..+++++.++.+..-++++. .+....++ ...+|..+..+....         -+-.+. .|+
T Consensus       253 vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~-~~~tlick-~daPv~~l~~~~~~~---------~~WvtT-tds  319 (735)
T KOG0308|consen  253 VHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNP-AKSTLICK-EDAPVLKLHLHEHDN---------SVWVTT-TDS  319 (735)
T ss_pred             eccCceEEEeeCCCc-ceEEecCCCCcEEecccCCc-hhheEeec-CCCchhhhhhccccC---------Cceeee-ccc
Confidence            899999999999987 67888888888777777774 22222222 345666777665442         234444 699


Q ss_pred             eEEEEcCCC
Q 020107          318 LLRIWMPES  326 (331)
Q Consensus       318 ~i~iW~~~~  326 (331)
                      .|+-|...-
T Consensus       320 ~I~rW~~~~  328 (735)
T KOG0308|consen  320 SIKRWKLEP  328 (735)
T ss_pred             cceecCCcc
Confidence            999997653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.7e-27  Score=189.59  Aligned_cols=240  Identities=18%  Similarity=0.201  Sum_probs=203.6

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------------------------ccCccEEEEEEc
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------------------------ISSSMCLCLEWN  114 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------------------------~~~~~v~~~~~~  114 (331)
                      .....|.-+|.+|+++|+    .++.++++.+|+| -|++.++.                        .|...+.+++.+
T Consensus       136 ~~~~~H~~s~~~vals~d----~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS  211 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPD----DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS  211 (479)
T ss_pred             eeeccccCcceEEEeecc----ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence            344679999999999999    8999999999999 55544322                        356778999999


Q ss_pred             CCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC
Q 020107          115 PSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH  194 (331)
Q Consensus       115 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  194 (331)
                      +|+++|++|+.|..|.||+.++.+  +++.+.+|.+.|.+++|-. +.+.+++++.|+.+++|++.....+..+..   |
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~t~e--hv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyG---H  285 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCDTLE--HVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYG---H  285 (479)
T ss_pred             CCCcEEEecCCCceEEEecCcccc--hhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhC---C
Confidence            999999999999999999999874  4888999999999999996 778899999999999999998777777776   9


Q ss_pred             CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc
Q 020107          195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK  274 (331)
Q Consensus       195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (331)
                      ++.|.+|.... .++.+-+|+.|+++++|++....   ..++.++.+.+-+++|-.+  ..+++++.++.|.+|.+... 
T Consensus       286 qd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ees---qlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KK-  358 (479)
T KOG0299|consen  286 QDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKK-  358 (479)
T ss_pred             ccceeeechhc-ccceEEeccccceeEEEeccccc---eeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeeccc-
Confidence            99999999887 78888888899999999996532   2234788999999999988  77889999999999999985 


Q ss_pred             cceeEEee-cC-----------CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          275 AEVLETYA-KH-----------GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       275 ~~~~~~~~-~h-----------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                       +++.+.+ .|           ...|++++..|..         .++|+|+ .+|.|++|.++++
T Consensus       359 -kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s---------dL~asGS-~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  359 -KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS---------DLLASGS-WSGCVRLWKIEDG  412 (479)
T ss_pred             -CceeEeeccccccCCccccccccceeeeEecccC---------ceEEecC-CCCceEEEEecCC
Confidence             4444433 12           2278999999998         6999999 9999999999988

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=6.3e-27  Score=195.18  Aligned_cols=277  Identities=16%  Similarity=0.204  Sum_probs=219.4

Q ss_pred             eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeE-EEEcCCCCCCC
Q 020107            4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFD-IKWSPVGGNAG   82 (331)
Q Consensus         4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~   82 (331)
                      .++.+++|-..|+-+...+. ..+++++          +||++++|+-...+..-...+.+|.+-|.. +++-+..   +
T Consensus         6 ls~~l~gH~~DVr~v~~~~~-~~i~s~s----------Rd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~---~   71 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDG-VCIISGS----------RDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESD---K   71 (745)
T ss_pred             eEEEeccCccchheeEecCC-eEEeecC----------CCCceeeeeccCcccccceecccCcceeeccceecccc---C
Confidence            34577888877766544321 4677777          899999999877653333455667777766 8888642   4


Q ss_pred             CeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           83 PFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        83 ~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      ..|++|+.|..+ +|...+...      |+..|.+++...++. +++|+.|.++++|-..+    +...+++|+..|+++
T Consensus        72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~----l~~~l~gH~asVWAv  146 (745)
T KOG0301|consen   72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE----LVYSLQGHTASVWAV  146 (745)
T ss_pred             cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh----hhcccCCcchheeee
Confidence            579999999999 998877654      899999999877776 99999999999999863    355689999999999


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  235 (331)
                      +.-| + +.+++|+.|.+|++|.-  ++..+.+..   |.+.|+.+++-+  ...|++++.||.|++|++.. +. +.+ 
T Consensus       147 ~~l~-e-~~~vTgsaDKtIklWk~--~~~l~tf~g---HtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~g-e~-l~~-  214 (745)
T KOG0301|consen  147 ASLP-E-NTYVTGSADKTIKLWKG--GTLLKTFSG---HTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDG-EV-LLE-  214 (745)
T ss_pred             eecC-C-CcEEeccCcceeeeccC--Cchhhhhcc---chhheeeeEEec--CCCeEeecCCceEEEEeccC-ce-eee-
Confidence            9987 4 38999999999999986  455777776   999999999997  45689999999999999953 34 433 


Q ss_pred             eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107          236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY  315 (331)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~  315 (331)
                      ..+|..-|+++...+++ +.++++|.|+.+++|+..    ++.+.+.-....|+++.+-+++          -|++|+ .
T Consensus       215 ~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWsa~~L~Ng----------DIvvg~-S  278 (745)
T KOG0301|consen  215 MHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWSAKVLLNG----------DIVVGG-S  278 (745)
T ss_pred             eeccceEEEEEEecCCC-CeEEEecCCceEEEeecC----ceEEEEecCccceEEEEEeeCC----------CEEEec-c
Confidence            48999999999955554 788888888888888765    5666776666699999999998          467777 7


Q ss_pred             CCeEEEEcCCCc
Q 020107          316 DRLLRIWMPESD  327 (331)
Q Consensus       316 d~~i~iW~~~~~  327 (331)
                      ||.||||..+..
T Consensus       279 DG~VrVfT~~k~  290 (745)
T KOG0301|consen  279 DGRVRVFTVDKD  290 (745)
T ss_pred             CceEEEEEeccc
Confidence            999999988744

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=9.2e-27  Score=185.63  Aligned_cols=279  Identities=14%  Similarity=0.220  Sum_probs=216.8

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC-eE
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP-FL   85 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l   85 (331)
                      ...+.+.+|.|+|..   .+|.+++          -||.++||.++....+..........+|.+.+|.|+    |. .+
T Consensus       211 ps~~~I~sv~FHp~~---plllvaG----------~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~----G~~~i  273 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTA---PLLLVAG----------LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN----GHSVI  273 (514)
T ss_pred             cCcCCceEEEecCCC---ceEEEec----------CCCcEEEEEecCccChhheeeeeccCccceeeecCC----CceEE
Confidence            346789999999998   4666666          599999999998764533333444678999999999    66 77


Q ss_pred             EEEcCCccE-EEecCCCccc---------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           86 AQADADGGL-LRDITGEKIS---------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        86 ~~~~~dg~i-iw~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      ++++....+ .||+.+.+..         ...+.....++++++|+..+..|.|.+....++.+  +..++ -.+.|..+
T Consensus       274 ~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el--i~s~K-ieG~v~~~  350 (514)
T KOG2055|consen  274 FTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL--ITSFK-IEGVVSDF  350 (514)
T ss_pred             EecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh--hheee-eccEEeeE
Confidence            887777766 9999886652         34566778899999999999999999999988865  66666 46689999


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcce--EEEEEecCCCCEEEEEecCCeEEEEEecCC-----
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV--CCIASIPSDSNTLLTGSYDEYLRVWDVRSI-----  228 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----  228 (331)
                      +|+. ++..|++++.+|.|.+||+++..++..+..    .+.|  ++++.++ ++.+||+|+..|.|.|||..+.     
T Consensus       351 ~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D----~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  351 TFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVD----DGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTN  424 (514)
T ss_pred             EEec-CCcEEEEEcCCceEEEEecCCcceEEEEee----cCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCC
Confidence            9996 778888888899999999999988888886    3333  5666678 8999999999999999997542     


Q ss_pred             CCCceeeeeecCCceEEEEECCCCCCeEEEEE--ecCcEEEEEEcCcccceeEEee---cCCcceeeeeecCCCCccccc
Q 020107          229 SKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC--MHNGFAVVKVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLEGK  303 (331)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~  303 (331)
                      .+|+.. +......|++++|+|+. .+++.++  ..+.++++.+...  .....+.   ..-+.|++++|+|.+      
T Consensus       425 PkPik~-~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~--TVFsNfP~~n~~vg~vtc~aFSP~s------  494 (514)
T KOG2055|consen  425 PKPIKT-VDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSC--TVFSNFPTSNTKVGHVTCMAFSPNS------  494 (514)
T ss_pred             CCchhh-hhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccce--eeeccCCCCCCcccceEEEEecCCC------
Confidence            345554 45567789999999995 4433332  4567788887663  3333333   234579999999988      


Q ss_pred             ccCcEEEEeecCCCeEEEEcCC
Q 020107          304 RKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       304 ~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                         .+||.|. .+|.|.+|.+.
T Consensus       495 ---G~lAvGN-e~grv~l~kL~  512 (514)
T KOG2055|consen  495 ---GYLAVGN-EAGRVHLFKLH  512 (514)
T ss_pred             ---ceEEeec-CCCceeeEeec
Confidence               6999999 99999999874

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.1e-26  Score=183.52  Aligned_cols=279  Identities=16%  Similarity=0.248  Sum_probs=220.7

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc----------------eEEeEeeecCcEeEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN----------------LELLYRMDTAGIFDI   72 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~----------------~~~~~~~~~~~v~~~   72 (331)
                      .-++.+|..+|..   .++.+++          .+|+|.=|++.++...                ++.-.+.|...+.++
T Consensus       142 ~~s~~~vals~d~---~~~fsas----------k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~  208 (479)
T KOG0299|consen  142 QLSVTSVALSPDD---KRVFSAS----------KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL  208 (479)
T ss_pred             cCcceEEEeeccc---cceeecC----------CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence            3466777777776   7888888          8999999998765421                111113688889999


Q ss_pred             EEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee
Q 020107           73 KWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW  145 (331)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  145 (331)
                      +.+|+    +++|++|+.|..+ ||+..+.+.      |...|.+++|-.....+++++.|++|++|+++....  +.++
T Consensus       209 avS~D----gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~--vetl  282 (479)
T KOG0299|consen  209 AVSSD----GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY--VETL  282 (479)
T ss_pred             EEcCC----CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH--HHHH
Confidence            99999    9999999999999 999987643      788999999998888899999999999999987644  7888


Q ss_pred             ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEe
Q 020107          146 KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDV  225 (331)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~  225 (331)
                      .+|+..|.++.... .+..+-+|+.|+++++|++.... ..++..   |.+.+-|++|-  +...|++|+.+|.|.+|++
T Consensus       283 yGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ees-qlifrg---~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  283 YGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEES-QLIFRG---GEGSIDCVAFI--NDEHFVSGSDNGSIALWSL  355 (479)
T ss_pred             hCCccceeeechhc-ccceEEeccccceeEEEeccccc-eeeeeC---CCCCeeeEEEe--cccceeeccCCceEEEeee
Confidence            99999999998774 56677777799999999995433 444554   88899999998  5778999999999999999


Q ss_pred             cCCCCCceeeeeecC-----------CceEEEEECCCCCCeEEEEEecCcEEEEEEcCc--ccceeEEeecCCcceeeee
Q 020107          226 RSISKPVNETSVCLG-----------GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE--KAEVLETYAKHGSLAYGAD  292 (331)
Q Consensus       226 ~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~  292 (331)
                      .+ ++|+.....+|.           ..|++++..|.. .++++++.++.+++|.+.+.  ..+++..+. -.+-|++++
T Consensus       356 ~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~  432 (479)
T KOG0299|consen  356 LK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLA  432 (479)
T ss_pred             cc-cCceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEE
Confidence            98 477766444442           278999999985 66666677888999999775  234555555 578899999


Q ss_pred             ecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      |++++.        .+++..| ....+--|-..
T Consensus       433 f~~sgk--------~ivagiG-kEhRlGRW~~~  456 (479)
T KOG0299|consen  433 FSNSGK--------RIVAGIG-KEHRLGRWWCL  456 (479)
T ss_pred             EccCCC--------EEEEecc-cccccceeeEe
Confidence            999995        5777777 77776666543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.2e-27  Score=181.94  Aligned_cols=248  Identities=15%  Similarity=0.188  Sum_probs=197.4

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC---------------c---------ccCccEEEEEEc
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE---------------K---------ISSSMCLCLEWN  114 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~---------------~---------~~~~~v~~~~~~  114 (331)
                      .....|..++.+.+|+|+    |.++|+|+.|..| |.+++..               .         -|..+|+++.|+
T Consensus       106 ~ylt~HK~~cR~aafs~D----G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPD----GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH  181 (430)
T ss_pred             EEEeecccceeeeeeCCC----CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence            345779999999999999    9999999999999 7776520               0         056789999999


Q ss_pred             CCCCeEEEEecCCeEEEEEccccceee-eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC
Q 020107          115 PSATSITVGLSDGSVSIVSVVESQLEV-LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI  193 (331)
Q Consensus       115 ~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  193 (331)
                      |....|++|+.|++|++||......+. .+.++ ...+|.++.|+| .+.+++.|.+-..+++||+.+.++...-.....
T Consensus       182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~q  259 (430)
T KOG0640|consen  182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ  259 (430)
T ss_pred             chhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence            999999999999999999998643221 22333 456899999999 899999999999999999999887544433456


Q ss_pred             CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC-ceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG-GVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      |.+.|+++.+++ .+++.++++.||.|++||--+. +++..+...|.+ .|.+..|..++ .+++++|.|..+++|.+..
T Consensus       260 ht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  260 HTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             cccceeEEEecC-CccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecC
Confidence            999999999999 9999999999999999998874 677765667765 68999999998 7889999999999999987


Q ss_pred             cccceeEEeecC-----CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          273 EKAEVLETYAKH-----GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       273 ~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                        ++.+.++.|-     ...-+...|+...         .+++.-....+.+.-||..+.
T Consensus       337 --~R~l~~YtGAg~tgrq~~rtqAvFNhtE---------dyVl~pDEas~slcsWdaRta  385 (430)
T KOG0640|consen  337 --GRMLKEYTGAGTTGRQKHRTQAVFNHTE---------DYVLFPDEASNSLCSWDARTA  385 (430)
T ss_pred             --CceEEEEecCCcccchhhhhhhhhcCcc---------ceEEccccccCceeeccccch
Confidence              5777777643     1223445566655         466665535577888887664

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.9e-28  Score=192.56  Aligned_cols=240  Identities=20%  Similarity=0.266  Sum_probs=200.3

Q ss_pred             eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107           61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSI  131 (331)
Q Consensus        61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i  131 (331)
                      ....|.+.+..+.|-++    ...|++|+.|..| +|+....+.        ..+.|+++.|.++++.+++++.|+.+++
T Consensus       170 ~ld~h~gev~~v~~l~~----sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRN----SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL  245 (459)
T ss_pred             hhhccccccceeEEccC----cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence            34668899999999999    8899999999999 999987763        2567999999999999999999999999


Q ss_pred             EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107          132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      |++...+.  ..++.+|...|+++.|.. ....+++|+.|.+|++||+....+...+..    ...+..|..+   ...+
T Consensus       246 Wnvd~~r~--~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~----~S~cnDI~~~---~~~~  315 (459)
T KOG0288|consen  246 WNVDSLRL--RHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP----GSQCNDIVCS---ISDV  315 (459)
T ss_pred             eeccchhh--hhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc----cccccceEec---ceee
Confidence            99998765  788999999999999986 555599999999999999998877666553    4556666664   4678


Q ss_pred             EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec--C--Ccc
Q 020107          212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK--H--GSL  287 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h--~~~  287 (331)
                      ++|..|++|++||++.. .+...  .+..+.|+++..++++ ..+++++-++.+.+++++..  +....+..  .  ...
T Consensus       316 ~SgH~DkkvRfwD~Rs~-~~~~s--v~~gg~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~--eI~~~~sA~g~k~asD  389 (459)
T KOG0288|consen  316 ISGHFDKKVRFWDIRSA-DKTRS--VPLGGRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTK--EIRQTFSAEGFKCASD  389 (459)
T ss_pred             eecccccceEEEeccCC-ceeeE--eecCcceeeEeeccCC-eEEeeecCCCceeeeecccc--cEEEEeeccccccccc
Confidence            99999999999999985 55555  6677799999999998 66778889999999999885  44444432  1  224


Q ss_pred             eeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107          288 AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT  330 (331)
Q Consensus       288 v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~  330 (331)
                      .+.+.|||++         .|+++|| .||.|+||++.++.+.
T Consensus       390 wtrvvfSpd~---------~YvaAGS-~dgsv~iW~v~tgKlE  422 (459)
T KOG0288|consen  390 WTRVVFSPDG---------SYVAAGS-ADGSVYIWSVFTGKLE  422 (459)
T ss_pred             cceeEECCCC---------ceeeecc-CCCcEEEEEccCceEE
Confidence            8899999999         7999999 9999999999988653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=6.1e-27  Score=176.82  Aligned_cols=286  Identities=16%  Similarity=0.215  Sum_probs=219.1

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--c-------e----EEeEeeecCcEeEEE
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--N-------L----ELLYRMDTAGIFDIK   73 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~-------~----~~~~~~~~~~v~~~~   73 (331)
                      .+.|.+.++..-+...  +|+++|+          .||.|.+||++....  .       .    +.-..+|...|.++.
T Consensus        41 ~HgGsvNsL~id~teg--rymlSGg----------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~  108 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEG--RYMLSGG----------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAI  108 (397)
T ss_pred             cCCCccceeeeccccc--eEEeecC----------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeE
Confidence            3456777777766543  8999998          899999999986441  0       1    111234667899999


Q ss_pred             EcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCC---CeEEEEecCCeEEEEEccccceeeeee
Q 020107           74 WSPVGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSA---TSITVGLSDGSVSIVSVVESQLEVLQQ  144 (331)
Q Consensus        74 ~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~  144 (331)
                      |-|-+   .-++.+++.|..+ +||..+.+.     -++.|++-+++|-.   -++|+|..+-.|++.|+..+..  ...
T Consensus       109 WyP~D---tGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~--sH~  183 (397)
T KOG4283|consen  109 WYPID---TGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF--SHT  183 (397)
T ss_pred             Eeeec---CceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc--eee
Confidence            99975   4589999999999 999998775     26778888888843   3688888899999999999965  788


Q ss_pred             eecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-Cc-----------eeeeecccCCCcceEEEEEecCCCCEEE
Q 020107          145 WKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PF-----------KLAFQNSKIHKMGVCCIASIPSDSNTLL  212 (331)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~  212 (331)
                      +.+|...|.++.|+|...-.|++|+.||.|++||+|.. .+           .+.++...+|.+.|..++|.. ++.+++
T Consensus       184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~  262 (397)
T KOG4283|consen  184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLA  262 (397)
T ss_pred             eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhh
Confidence            99999999999999977778999999999999999864 11           223333356889999999999 999999


Q ss_pred             EEecCCeEEEEEecCCCCCceeee-eecCC---ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce
Q 020107          213 TGSYDEYLRVWDVRSISKPVNETS-VCLGG---GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA  288 (331)
Q Consensus       213 ~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  288 (331)
                      +++.|..+++|+..+++..+...- ..|..   .-..+. +.+. +.++..-.++++.++.+..  +..+..+..|-..|
T Consensus       263 ~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s-~vfv~~p~~~~lall~~~s--gs~ir~l~~h~k~i  338 (397)
T KOG4283|consen  263 SCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDS-DVFVLFPNDGSLALLNLLE--GSFVRRLSTHLKRI  338 (397)
T ss_pred             hccCccceEEeecccCcccccccccccccccccceEEEe-eccc-ceEEEEecCCeEEEEEccC--ceEEEeeeccccee
Confidence            999999999999988754333211 11111   111133 2222 3444444557777777766  68889999998899


Q ss_pred             eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                      .+..+-|+-         +...++. .|+.|..|-+
T Consensus       339 ~c~~~~~~f---------q~~~tg~-~d~ni~~w~p  364 (397)
T KOG4283|consen  339 NCAAYRPDF---------EQCFTGD-MNGNIYMWSP  364 (397)
T ss_pred             eEEeecCch---------hhhhccc-cCCccccccc
Confidence            999999998         6889999 9999999987

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6.2e-25  Score=167.54  Aligned_cols=279  Identities=11%  Similarity=0.155  Sum_probs=212.9

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      ..+++.++.|++.+   ++|++++          .|..++|||...+. ..+.+ ..+..+|..++|...    ...++.
T Consensus        13 ~~~~i~sl~fs~~G---~~litss----------~dDsl~LYd~~~g~-~~~ti-~skkyG~~~~~Fth~----~~~~i~   73 (311)
T KOG1446|consen   13 TNGKINSLDFSDDG---LLLITSS----------EDDSLRLYDSLSGK-QVKTI-NSKKYGVDLACFTHH----SNTVIH   73 (311)
T ss_pred             CCCceeEEEecCCC---CEEEEec----------CCCeEEEEEcCCCc-eeeEe-ecccccccEEEEecC----CceEEE
Confidence            45789999999888   7888877          68899999999886 45444 456667888999877    455555


Q ss_pred             EcC--CccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107           88 ADA--DGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus        88 ~~~--dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  158 (331)
                      ++.  |.+| .-++.+.+.      |...|.+++.+|-++.+++++.|++|++||++..+.+-+..+.    .-..++|.
T Consensus        74 sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~----~~pi~AfD  149 (311)
T KOG1446|consen   74 SSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS----GRPIAAFD  149 (311)
T ss_pred             ccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC----CCcceeEC
Confidence            555  6666 555555443      8999999999999999999999999999999976553333332    23367899


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCCC--ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRESP--FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  236 (331)
                      | .+-++|++.....|++||+|.-.  ....+....+-....+.|.|+| +|++|+.+...+.+++.|.-.+. .... +
T Consensus       150 p-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~-~~~t-f  225 (311)
T KOG1446|consen  150 P-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGT-VKST-F  225 (311)
T ss_pred             C-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCc-Eeee-E
Confidence            8 88888888888899999999753  2334444223567899999999 99999999999999999998864 2322 2


Q ss_pred             eecCCc---eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEe
Q 020107          237 VCLGGG---VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATC  312 (331)
Q Consensus       237 ~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  312 (331)
                      ..+...   .-..+|.|++ ..++++..++.+.+|++..  +..+..+++ +.+++.++.|+|..         -+++| 
T Consensus       226 s~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~t--g~~v~~~~~~~~~~~~~~~fnP~~---------~mf~s-  292 (311)
T KOG1446|consen  226 SGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLET--GKKVAVLRGPNGGPVSCVRFNPRY---------AMFVS-  292 (311)
T ss_pred             eeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCC--CcEeeEecCCCCCCccccccCCce---------eeeee-
Confidence            333222   2578899997 7777777789999999955  688888887 78999999999986         35554 


Q ss_pred             ecCCCeEEEEcCCCcc
Q 020107          313 SFYDRLLRIWMPESDC  328 (331)
Q Consensus       313 ~~~d~~i~iW~~~~~~  328 (331)
                        .+..+-+|=+....
T Consensus       293 --a~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  293 --ASSNLVFWLPDEDA  306 (311)
T ss_pred             --cCceEEEEeccccc
Confidence              46789999876543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.2e-26  Score=174.70  Aligned_cols=281  Identities=19%  Similarity=0.187  Sum_probs=198.1

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee--ecCcEeEEEEcCCCCCCCCeE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM--DTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      |.+|-..|....++.+|.+||+.+          .|+.|++|++...........+.  ..+--+.+.|.|+    -+-+
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~----------~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapD----c~s~  147 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATIS----------GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPD----CKSV  147 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEe----------CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCC----cceE
Confidence            444444444444444459999998          89999999998754221111111  1234678999999    5555


Q ss_pred             EEEcCCcc-E-EEecCC------------------CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee
Q 020107           86 AQADADGG-L-LRDITG------------------EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW  145 (331)
Q Consensus        86 ~~~~~dg~-i-iw~~~~------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  145 (331)
                      +.....|. + ++.+..                  .+.|...+..+-....+.+|++++.|..|.+|+++ ++.  +..+
T Consensus       148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~--L~~i  224 (420)
T KOG2096|consen  148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL--LQSI  224 (420)
T ss_pred             EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce--eeee
Confidence            54444443 3 443322                  22245666777777788999999999999999998 544  6667


Q ss_pred             ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC------ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCe
Q 020107          146 KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP------FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY  219 (331)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  219 (331)
                      ......-+..+.+| ++.++++++..-.|++|.+--.+      ....++. ++|+..|..++|+| +...+++.+.||+
T Consensus       225 dtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn-~S~r~vtvSkDG~  301 (420)
T KOG2096|consen  225 DTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSN-SSTRAVTVSKDGK  301 (420)
T ss_pred             ccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCC-CcceeEEEecCCc
Confidence            66666778889999 89999999999999999874322      2334444 66999999999999 9999999999999


Q ss_pred             EEEEEecCC----C--CCcee---eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-cCCccee
Q 020107          220 LRVWDVRSI----S--KPVNE---TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-KHGSLAY  289 (331)
Q Consensus       220 i~iwd~~~~----~--~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~  289 (331)
                      +++||+.-.    +  +.+.+   .+..-.+....++++|.+  ..++.+....++++.-.+  ++...++. .|...|.
T Consensus       302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g--~~lA~s~gs~l~~~~se~--g~~~~~~e~~h~~~Is  377 (420)
T KOG2096|consen  302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG--DSLAVSFGSDLKVFASED--GKDYPELEDIHSTTIS  377 (420)
T ss_pred             EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC--cEEEeecCCceEEEEccc--CccchhHHHhhcCcee
Confidence            999998632    1  11111   012234445599999995  455555556666666555  45555554 5899999


Q ss_pred             eeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107          290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~  323 (331)
                      +++|++++         ++++|||  |+.+++..
T Consensus       378 ~is~~~~g---------~~~atcG--dr~vrv~~  400 (420)
T KOG2096|consen  378 SISYSSDG---------KYIATCG--DRYVRVIR  400 (420)
T ss_pred             eEEecCCC---------cEEeeec--ceeeeeec
Confidence            99999999         7999999  99999876

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2.4e-26  Score=192.74  Aligned_cols=274  Identities=16%  Similarity=0.206  Sum_probs=212.4

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eEEeEeeecCcEeEEEEcCCC---CC----CCCeEEEEcCCccE-E
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LELLYRMDTAGIFDIKWSPVG---GN----AGPFLAQADADGGL-L   95 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~---~~----~~~~l~~~~~dg~i-i   95 (331)
                      +.|.+-.          .|..++|||+....+. .....-.|...|+++.--|-+   ++    -...+.+++.|++| +
T Consensus       337 ~klscVY----------ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  337 DKLSCVY----------NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             ceEEEEE----------cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            6776664          5999999999876532 112234588889998877721   00    03368999999999 9


Q ss_pred             EecCCCcc-------------------------------------------cCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107           96 RDITGEKI-------------------------------------------SSSMCLCLEWNPSATSITVGLSDGSVSIV  132 (331)
Q Consensus        96 w~~~~~~~-------------------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  132 (331)
                      |++.....                                           ....+.+++.+|++++||+|..-|.+++|
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence            99875110                                           13457899999999999999999999999


Q ss_pred             EccccceeeeeeeecccceeEEEeeCCC--CCcEEEEEcCCCeEEEEEccCCC-ceeeeecccCCCc-------------
Q 020107          133 SVVESQLEVLQQWKAHEFELWATSFDVH--QPHMVYTGSDDCKFSGWDIRESP-FKLAFQNSKIHKM-------------  196 (331)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~-------------  196 (331)
                      ++..-+.  ...+..|+..|.|+.|+..  ..++|++++.|..|++||....- ..+.+..   |..             
T Consensus       487 ~Lq~l~~--~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~---HSssITsvKFa~~gln  561 (1080)
T KOG1408|consen  487 DLQELEY--TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG---HSSSITSVKFACNGLN  561 (1080)
T ss_pred             Eehhhhh--hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc---cccceeEEEEeecCCc
Confidence            9986543  6677899999999999842  35789999999999999986421 1111111   333             


Q ss_pred             ------------------------------------ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee-eeeec
Q 020107          197 ------------------------------------GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE-TSVCL  239 (331)
Q Consensus       197 ------------------------------------~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~  239 (331)
                                                          .++.|+..| +..++++++.|..|+|||+.++++.... -...|
T Consensus       562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~  640 (1080)
T KOG1408|consen  562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH  640 (1080)
T ss_pred             eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccC
Confidence                                                355666667 7779999999999999999997543221 12356


Q ss_pred             CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107          240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL  319 (331)
Q Consensus       240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i  319 (331)
                      .+..-.+...|.+ -++++++++..+.+++...  ++++.++.||...|+++.|.+|-         +.|++++ .||.|
T Consensus       641 eG~lIKv~lDPSg-iY~atScsdktl~~~Df~s--gEcvA~m~GHsE~VTG~kF~nDC---------kHlISvs-gDgCI  707 (1080)
T KOG1408|consen  641 EGDLIKVILDPSG-IYLATSCSDKTLCFVDFVS--GECVAQMTGHSEAVTGVKFLNDC---------KHLISVS-GDGCI  707 (1080)
T ss_pred             CCceEEEEECCCc-cEEEEeecCCceEEEEecc--chhhhhhcCcchheeeeeecccc---------hhheeec-CCceE
Confidence            7788899999997 7888889999999999988  79999999999999999999999         6899999 89999


Q ss_pred             EEEcCCCc
Q 020107          320 RIWMPESD  327 (331)
Q Consensus       320 ~iW~~~~~  327 (331)
                      .||.+...
T Consensus       708 FvW~lp~~  715 (1080)
T KOG1408|consen  708 FVWKLPLT  715 (1080)
T ss_pred             EEEECchh
Confidence            99998653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=1.2e-26  Score=191.85  Aligned_cols=289  Identities=19%  Similarity=0.267  Sum_probs=212.4

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-----eEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-----LELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      ++....|++......+||.+.          ++|.|.++|.....-.     + .....|..+|.++.|-|.    ...|
T Consensus        51 pPf~~sFs~~~n~eHiLavad----------E~G~i~l~dt~~~~fr~ee~~l-k~~~aH~nAifDl~wapg----e~~l  115 (720)
T KOG0321|consen   51 PPFADSFSAAPNKEHILAVAD----------EDGGIILFDTKSIVFRLEERQL-KKPLAHKNAIFDLKWAPG----ESLL  115 (720)
T ss_pred             CCccccccCCCCccceEEEec----------CCCceeeecchhhhcchhhhhh-cccccccceeEeeccCCC----ceeE
Confidence            345678888777778999997          8999999998765321     2 234569999999999997    8899


Q ss_pred             EEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCe-EEEEecCCeEEEEEccccce----------------
Q 020107           86 AQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQL----------------  139 (331)
Q Consensus        86 ~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~----------------  139 (331)
                      ++++.|.++ .|++.+..+        |...+.+++|.|..+. |++|+.||.|.|||++....                
T Consensus       116 VsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~  195 (720)
T KOG0321|consen  116 VSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT  195 (720)
T ss_pred             EEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence            999999999 999988665        6778899999997764 88899999999999875320                


Q ss_pred             --ee-------eeeeeccccee----EEEeeCCCCCcEEEEEcC-CCeEEEEEccCCCceeeeec-----ccCC---Ccc
Q 020107          140 --EV-------LQQWKAHEFEL----WATSFDVHQPHMVYTGSD-DCKFSGWDIRESPFKLAFQN-----SKIH---KMG  197 (331)
Q Consensus       140 --~~-------~~~~~~~~~~v----~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-----~~~~---~~~  197 (331)
                        .+       +...+.+...|    +.+.|  .+...|++++. |+.|++||+++.........     .+-|   ...
T Consensus       196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G  273 (720)
T KOG0321|consen  196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG  273 (720)
T ss_pred             CCCCCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence              00       11122333334    44554  37788888887 99999999997654322211     1113   345


Q ss_pred             eEEEEEecCCCCEEEEEecCCeEEEEEecCCCC-CceeeeeecC-Cc-eEEEEECCCCCCeEEEEEecCcEEEEEEcCcc
Q 020107          198 VCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK-PVNETSVCLG-GG-VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK  274 (331)
Q Consensus       198 v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (331)
                      +.++.... .|.+|.+.+.|+.|.+|+++.... |+.. +.++. .. -..-..+|++ ..+++++.+....+|.+... 
T Consensus       274 ~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~-~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~-  349 (720)
T KOG0321|consen  274 QVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAE-FSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSP-  349 (720)
T ss_pred             eEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhh-ccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCc-
Confidence            77787777 778888888899999999987543 2222 12221 11 1223457886 67778888888999999886 


Q ss_pred             cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          275 AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       275 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ......+.+|.-.|+.++|.|..-        .-+++|+ +|-.+++|++.+++.
T Consensus       350 e~~~~~l~Ght~eVt~V~w~pS~~--------t~v~TcS-dD~~~kiW~l~~~l~  395 (720)
T KOG0321|consen  350 EAPPALLLGHTREVTTVRWLPSAT--------TPVATCS-DDFRVKIWRLSNGLE  395 (720)
T ss_pred             cCChhhhhCcceEEEEEeeccccC--------CCceeec-cCcceEEEeccCchh
Confidence            556667889999999999999865        6789998 999999999987754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=184.94  Aligned_cols=260  Identities=13%  Similarity=0.111  Sum_probs=201.9

Q ss_pred             CCCcEEEEeccCcccceEEeEeee-cCcEeEE-EEcCCCCCCCCeEEEEcCCccE--EEecCCCcc------cCccEEEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMD-TAGIFDI-KWSPVGGNAGPFLAQADADGGL--LRDITGEKI------SSSMCLCL  111 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~-~~~v~~~-~~~~~~~~~~~~l~~~~~dg~i--iw~~~~~~~------~~~~v~~~  111 (331)
                      ....+.+||+.++...+ .+ ++. ...-.++ ...      ..+++++......  +|.+.....      .++++.++
T Consensus        16 d~~~~~~~dl~TGt~~~-~y-kg~~~a~~~sl~~l~------~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al   87 (476)
T KOG0646|consen   16 DPINCIVWDLRTGTSLL-QY-KGSYLAQAASLTALN------NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL   87 (476)
T ss_pred             CCcceeEEecCCCceeE-Ee-cCcccccchhhhhhc------hhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence            45669999999986322 22 222 1111111 122      3377777766655  888876433      36889999


Q ss_pred             EEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC---------C
Q 020107          112 EWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE---------S  182 (331)
Q Consensus       112 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~  182 (331)
                      +-+|.|.+|+.|+..|.|++|.+.+|.+  +..+.+|-..|+++.|+- ++.+|++|+.||.|.+|++..         .
T Consensus        88 ~s~n~G~~l~ag~i~g~lYlWelssG~L--L~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~  164 (476)
T KOG0646|consen   88 ASSNLGYFLLAGTISGNLYLWELSSGIL--LNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSV  164 (476)
T ss_pred             ecCCCceEEEeecccCcEEEEEeccccH--HHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence            9999999999999999999999999976  777789999999999995 899999999999999998742         2


Q ss_pred             CceeeeecccCCCcceEEEEEecC-CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107          183 PFKLAFQNSKIHKMGVCCIASIPS-DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       183 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  261 (331)
                      +....|.   .|.-+|+.+...+- ...+++|.+.|.++++||+..+ ..+..  ......+.+++..|.+ ..+.+++.
T Consensus       165 ~p~~~f~---~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlt--i~fp~si~av~lDpae-~~~yiGt~  237 (476)
T KOG0646|consen  165 KPLHIFS---DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLT--ITFPSSIKAVALDPAE-RVVYIGTE  237 (476)
T ss_pred             cceeeec---cCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEE--EecCCcceeEEEcccc-cEEEecCC
Confidence            2233444   49999999998762 3468999999999999999986 55555  6778899999999986 77778888


Q ss_pred             cCcEEEEEEcCcc--------------cceeEEeecCCc--ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          262 HNGFAVVKVGGEK--------------AEVLETYAKHGS--LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       262 ~~~~~~~~~~~~~--------------~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      ++.+.+..+....              +..+..+.||.+  .|++++.+-|+         .+|++|+ .||.|+|||+.
T Consensus       238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg---------tlLlSGd-~dg~VcvWdi~  307 (476)
T KOG0646|consen  238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG---------TLLLSGD-EDGKVCVWDIY  307 (476)
T ss_pred             cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc---------cEEEeeC-CCCCEEEEecc
Confidence            8887666664432              345666778988  99999999999         7999999 99999999997


Q ss_pred             Cccc
Q 020107          326 SDCL  329 (331)
Q Consensus       326 ~~~~  329 (331)
                      +...
T Consensus       308 S~Q~  311 (476)
T KOG0646|consen  308 SKQC  311 (476)
T ss_pred             hHHH
Confidence            7543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=8e-27  Score=200.27  Aligned_cols=231  Identities=18%  Similarity=0.281  Sum_probs=201.9

Q ss_pred             ecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc
Q 020107           65 DTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE  136 (331)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  136 (331)
                      +...+.+..|..+      ++++++.+.++ +|+..+..       .|.+.|.++++..-+..+++|+.|.++++||..+
T Consensus       207 ~~~~~~~~q~~~~------~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLHDG------FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             CcchhhhheeecC------eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence            4567888999866      89999999999 99987654       3789999999988788999999999999999998


Q ss_pred             cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec
Q 020107          137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                      ++.  ...+.+|...+.++...+   ..+++|+.|.+|++|++.++..+..+..   |..+|+++..+   +.++++|+.
T Consensus       281 g~C--~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~---h~~~V~~v~~~---~~~lvsgs~  349 (537)
T KOG0274|consen  281 GEC--THSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRG---HTGPVNCVQLD---EPLLVSGSY  349 (537)
T ss_pred             CcE--EEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEecc---ccccEEEEEec---CCEEEEEec
Confidence            854  888999999999999754   7888999999999999999998888877   99999999995   789999999


Q ss_pred             CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107          217 DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRG  296 (331)
Q Consensus       217 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  296 (331)
                      |++|++||+.++ +++.. +.+|.+.|+++.+.+.  ..++.++.|..+++|++.... +++.++.+|.+.+.++.+.. 
T Consensus       350 d~~v~VW~~~~~-~cl~s-l~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~-  423 (537)
T KOG0274|consen  350 DGTVKVWDPRTG-KCLKS-LSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRD-  423 (537)
T ss_pred             CceEEEEEhhhc-eeeee-ecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh-hhhhhhcCCccccccccccc-
Confidence            999999999975 66666 6789999999999886  678888899889999998842 89999999999887766554 


Q ss_pred             CCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          297 RSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                                ++|++++ .|++|++||.+++..
T Consensus       424 ----------~~Lvs~~-aD~~Ik~WD~~~~~~  445 (537)
T KOG0274|consen  424 ----------NFLVSSS-ADGTIKLWDAEEGEC  445 (537)
T ss_pred             ----------ceeEecc-ccccEEEeecccCce
Confidence                      4899999 999999999988754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=4.5e-27  Score=174.46  Aligned_cols=206  Identities=19%  Similarity=0.221  Sum_probs=179.0

Q ss_pred             ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC
Q 020107          103 ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES  182 (331)
Q Consensus       103 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  182 (331)
                      .|...+.+++|+.+|..|++|+.|+++.+|+++..+........+|...|-.++|+|..+.++++++.|..|++||++.+
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~   97 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG   97 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence            35678899999999999999999999999999887654455667899999999999988999999999999999999999


Q ss_pred             CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec
Q 020107          183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH  262 (331)
Q Consensus       183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  262 (331)
                      ++...+..    ...=.-+.|+| ++.+++.++.|..|.+.|.++. +++..  ......+..++|+.++ .+++.+.+.
T Consensus        98 k~~~~i~~----~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~-~~~~~--~~~~~e~ne~~w~~~n-d~Fflt~Gl  168 (313)
T KOG1407|consen   98 KCTARIET----KGENINITWSP-DGEYIAVGNKDDRITFIDARTY-KIVNE--EQFKFEVNEISWNNSN-DLFFLTNGL  168 (313)
T ss_pred             cEEEEeec----cCcceEEEEcC-CCCEEEEecCcccEEEEEeccc-ceeeh--hcccceeeeeeecCCC-CEEEEecCC
Confidence            98888776    44445688999 9999999999999999999984 55555  6677788999999665 777777777


Q ss_pred             CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          263 NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +.+.|.....  -+++.+++.|.....++.|+|+|         +++|+|+ .|..+.+||++....
T Consensus       169 G~v~ILsyps--Lkpv~si~AH~snCicI~f~p~G---------ryfA~Gs-ADAlvSLWD~~ELiC  223 (313)
T KOG1407|consen  169 GCVEILSYPS--LKPVQSIKAHPSNCICIEFDPDG---------RYFATGS-ADALVSLWDVDELIC  223 (313)
T ss_pred             ceEEEEeccc--cccccccccCCcceEEEEECCCC---------ceEeecc-ccceeeccChhHhhh
Confidence            8888888775  58899999999999999999999         8999999 999999999987544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.8e-27  Score=200.62  Aligned_cols=243  Identities=19%  Similarity=0.250  Sum_probs=191.8

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCc-------------ccCccEEEEEEcC-CCCeEEEEecCCeEEEE
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEK-------------ISSSMCLCLEWNP-SATSITVGLSDGSVSIV  132 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~-------------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~  132 (331)
                      ....+|..+++    ...++.++..-.-++.+....             -....+..+.|.. +.++||+++..|.|.+|
T Consensus        40 ~~~nAIs~nr~----~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW  115 (839)
T KOG0269|consen   40 AKANAISVNRD----INQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW  115 (839)
T ss_pred             cccceEeecCC----cceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence            34566667777    555666554322133332211             1123455677874 45789999999999999


Q ss_pred             Ecccc-ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107          133 SVVES-QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       133 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      |+... +.+.+..|..|+..++++.|++..+++|++|+.||+|++||+|..+....+..   ....|+.|.|+|..++.|
T Consensus       116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~---nSESiRDV~fsp~~~~~F  192 (839)
T KOG0269|consen  116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS---NSESIRDVKFSPGYGNKF  192 (839)
T ss_pred             ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---cchhhhceeeccCCCceE
Confidence            99861 22345678899999999999998999999999999999999999888777776   788999999999889999


Q ss_pred             EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeee
Q 020107          212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGA  291 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  291 (331)
                      +++.+.|.+++||+|...++... +.+|.++|.++.|+|++ ..++++|.|+.+++|++.......+.++.. ..+|..+
T Consensus       193 ~s~~dsG~lqlWDlRqp~r~~~k-~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~rV  269 (839)
T KOG0269|consen  193 ASIHDSGYLQLWDLRQPDRCEKK-LTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGRV  269 (839)
T ss_pred             EEecCCceEEEeeccCchhHHHH-hhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccceeEEee-cceeeee
Confidence            99999999999999998777666 68999999999999975 777788888889999998765556655543 5689999


Q ss_pred             eecCCCCcccccccCcEEEEeec-CCCeEEEEcCCCc
Q 020107          292 DWQRGRSSLEGKRKNSLVATCSF-YDRLLRIWMPESD  327 (331)
Q Consensus       292 ~~~~~~~~~~~~~~~~~l~s~~~-~d~~i~iW~~~~~  327 (331)
                      .|-|..+        ..||+++- .|-.|+|||+.-.
T Consensus       270 kWRP~~~--------~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  270 KWRPARS--------YHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             eeccCcc--------chhhhhhccccceEEEEeeccc
Confidence            9999986        78888763 5789999998654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.6e-28  Score=211.51  Aligned_cols=302  Identities=21%  Similarity=0.341  Sum_probs=232.8

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--eEEeEe-eecCcEeEEEEcCCCCCCCCeEEE
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--LELLYR-MDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      ....++|+|.++  .++|+|+.......+.+.+.++-||.++.....  ++.... .-....+.++|.+.+....-+||.
T Consensus         8 Rta~~awSp~~~--~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaG   85 (1049)
T KOG0307|consen    8 RTATFAWSPASP--PLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAG   85 (1049)
T ss_pred             ccceEEecCCCc--hhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeec
Confidence            345789999985  789988744333333446778888877654321  222211 123568999999983210124999


Q ss_pred             EcCCccE-EEecCCC------------cccCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeeeeecccceeE
Q 020107           88 ADADGGL-LRDITGE------------KISSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW  153 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~------------~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~  153 (331)
                      |..||.| +|+....            +.|.+.|..+.|++... .||+|+.||.|.|||+...+......-......|.
T Consensus        86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~  165 (1049)
T KOG0307|consen   86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK  165 (1049)
T ss_pred             cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence            9999999 9987652            33799999999999665 89999999999999998743211111122456899


Q ss_pred             EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC---eEEEEEecCCCC
Q 020107          154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVWDVRSISK  230 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~  230 (331)
                      +++|+....+.|++++.+|.+.|||+|..+.+..+.... ....+..+.|+|.....+++++.|.   .|.+||+|....
T Consensus       166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass  244 (1049)
T KOG0307|consen  166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS  244 (1049)
T ss_pred             EeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence            999998778899999999999999999887665555511 2245889999997777888887664   699999999888


Q ss_pred             CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEE
Q 020107          231 PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVA  310 (331)
Q Consensus       231 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~  310 (331)
                      |+.. +..|...|.++.|++.++.++++++.|+.+.+|+...  ++.+..+......+..+.|+|..+        ..|+
T Consensus       245 P~k~-~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t--gEvl~~~p~~~nW~fdv~w~pr~P--------~~~A  313 (1049)
T KOG0307|consen  245 PLKI-LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT--GEVLGELPAQGNWCFDVQWCPRNP--------SVMA  313 (1049)
T ss_pred             chhh-hcccccceeeeccCCCCchhhhcccCCCCeeEecCCC--ceEeeecCCCCcceeeeeecCCCc--------chhh
Confidence            8887 4799999999999999888999999999988888776  789999988888999999999998        7888


Q ss_pred             EeecCCCeEEEEcCCCc
Q 020107          311 TCSFYDRLLRIWMPESD  327 (331)
Q Consensus       311 s~~~~d~~i~iW~~~~~  327 (331)
                      .++ -||.|.|+.+...
T Consensus       314 ~as-fdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  314 AAS-FDGKISIYSLQGT  329 (1049)
T ss_pred             hhe-eccceeeeeeecC
Confidence            888 8999999998654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.8e-25  Score=169.77  Aligned_cols=265  Identities=17%  Similarity=0.237  Sum_probs=204.1

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      +..+..|.|+|.+   +.|++++          -||.+++|++...+  ++..+ .|..++.+++|.++     ..+++|
T Consensus        13 ~d~IS~v~f~~~~---~~LLvss----------WDgslrlYdv~~~~--l~~~~-~~~~plL~c~F~d~-----~~~~~G   71 (323)
T KOG1036|consen   13 EDGISSVKFSPSS---SDLLVSS----------WDGSLRLYDVPANS--LKLKF-KHGAPLLDCAFADE-----STIVTG   71 (323)
T ss_pred             hhceeeEEEcCcC---CcEEEEe----------ccCcEEEEeccchh--hhhhe-ecCCceeeeeccCC-----ceEEEe
Confidence            3457888898766   6666666          49999999999885  43332 48899999999986     379999


Q ss_pred             cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      +-||.+ ..|+.+.+.     |..++.|+.+++-...+++|+.|++|++||.+...  ....+. ....|.++...   +
T Consensus        72 ~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~--~~~~~d-~~kkVy~~~v~---g  145 (323)
T KOG1036|consen   72 GLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV--VVGTFD-QGKKVYCMDVS---G  145 (323)
T ss_pred             ccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc--cccccc-cCceEEEEecc---C
Confidence            999999 999987654     78999999999988999999999999999998642  234443 34478888864   4


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC--CCceeeeeecC
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS--KPVNETSVCLG  240 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~  240 (331)
                      +.|+.|+.+..+.+||+|+......... ..-+..++||++.| ++.=++.++-||.|.+=.+....  +.....+..|.
T Consensus       146 ~~LvVg~~~r~v~iyDLRn~~~~~q~re-S~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr  223 (323)
T KOG1036|consen  146 NRLVVGTSDRKVLIYDLRNLDEPFQRRE-SSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR  223 (323)
T ss_pred             CEEEEeecCceEEEEEcccccchhhhcc-ccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence            7899999999999999998764432222 23567899999999 88888999999998875555431  11111123443


Q ss_pred             ---------CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107          241 ---------GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVAT  311 (331)
Q Consensus       241 ---------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  311 (331)
                               .+|++|+|+|-. +.++++|+|+-+.+|++...  +.+..+..-...|.+++|+.++         ..||.
T Consensus       224 ~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~r--Krl~q~~~~~~SI~slsfs~dG---------~~LAi  291 (323)
T KOG1036|consen  224 LSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNR--KRLKQLAKYETSISSLSFSMDG---------SLLAI  291 (323)
T ss_pred             cccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcch--hhhhhccCCCCceEEEEeccCC---------CeEEE
Confidence                     379999999985 88888888888778887763  5666676667789999999999         58888


Q ss_pred             eec
Q 020107          312 CSF  314 (331)
Q Consensus       312 ~~~  314 (331)
                      +++
T Consensus       292 a~s  294 (323)
T KOG1036|consen  292 ASS  294 (323)
T ss_pred             Eec
Confidence            864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=9.3e-28  Score=185.86  Aligned_cols=241  Identities=15%  Similarity=0.128  Sum_probs=201.6

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC------cccCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE------KISSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      +...+.+|..+|.+++=+|..   -..+++|+.||.+ +|++...      +.|.+.|..|++..  ..+++++.|.+|+
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~---ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK  132 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNK---LSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK  132 (433)
T ss_pred             chhhccccccccchhhcCcch---hhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCccee
Confidence            333458899999999999984   2689999999999 9999874      44889999999976  7799999999999


Q ss_pred             EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107          131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                      .|.++..   ++.++.+ ...+..+.-+. ..+.+++++.  .|.|||.+...++..+..   ....|.++.|+|....+
T Consensus       133 ~wk~~~~---p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smsw---G~Dti~svkfNpvETsI  202 (433)
T KOG0268|consen  133 QWKIDGP---PLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSW---GADSISSVKFNPVETSI  202 (433)
T ss_pred             eeeccCC---cceeeec-ccccccccccc-ccccccccCc--eeeecccccCCccceeec---CCCceeEEecCCCcchh
Confidence            9998753   4666664 45677887765 6678888874  588999988877888887   67889999999977788


Q ss_pred             EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceee
Q 020107          211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG  290 (331)
Q Consensus       211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  290 (331)
                      |++++.|+.|.+||++.. .|+..  ......-+.|+|+|.. ..++++..|..++.++++.. ..++..+.+|.++|.+
T Consensus       203 Las~~sDrsIvLyD~R~~-~Pl~K--Vi~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l-~~p~~v~~dhvsAV~d  277 (433)
T KOG0268|consen  203 LASCASDRSIVLYDLRQA-SPLKK--VILTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNL-SRPLNVHKDHVSAVMD  277 (433)
T ss_pred             eeeeccCCceEEEecccC-Cccce--eeeeccccceecCccc-cceeeccccccceehhhhhh-cccchhhcccceeEEE
Confidence            999999999999999995 77777  5556677899999954 56666667778888998887 6788899999999999


Q ss_pred             eeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ++|+|.|         +-++||| .|.+|+||.+..+.
T Consensus       278 VdfsptG---------~Efvsgs-yDksIRIf~~~~~~  305 (433)
T KOG0268|consen  278 VDFSPTG---------QEFVSGS-YDKSIRIFPVNHGH  305 (433)
T ss_pred             eccCCCc---------chhcccc-ccceEEEeecCCCc
Confidence            9999999         6899999 99999999987653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.4e-26  Score=202.29  Aligned_cols=251  Identities=18%  Similarity=0.241  Sum_probs=194.9

Q ss_pred             ee-cCcEeEEEEcCCCCCCCCeEEEEc--CCccE-EEecCCC------------------cccCccEEEEEEcCCCCeEE
Q 020107           64 MD-TAGIFDIKWSPVGGNAGPFLAQAD--ADGGL-LRDITGE------------------KISSSMCLCLEWNPSATSIT  121 (331)
Q Consensus        64 ~~-~~~v~~~~~~~~~~~~~~~l~~~~--~dg~i-iw~~~~~------------------~~~~~~v~~~~~~~~~~~l~  121 (331)
                      .| ...|.++..+|+    +..+++|+  .||.+ +|+...-                  ..|.+.|.|+.|+|||++||
T Consensus        10 ~H~~~~IfSIdv~pd----g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA   85 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPD----GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA   85 (942)
T ss_pred             ccCCeeEEEEEecCC----ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence            34 345999999999    99999999  88888 8876431                  12688999999999999999


Q ss_pred             EEecCCeEEEEEccc----------------cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107          122 VGLSDGSVSIVSVVE----------------SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK  185 (331)
Q Consensus       122 ~~~~dg~i~i~d~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (331)
                      +|++|+.|.||+...                .+++.+..+.+|...|..++|+| ++.++++++.|++|.+|+.++.+..
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~  164 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELL  164 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceee
Confidence            999999999999872                13456778889999999999999 8899999999999999999999888


Q ss_pred             eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC------CCceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107          186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS------KPVNETSVCLGGGVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  259 (331)
                      ..+..   |...|..+.|.| -|++||+-+.|++|++|++.+..      +|..+  ......+.++.|+|||..+....
T Consensus       165 ~vl~~---H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~--~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  165 KVLRG---HQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE--SPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             eeeec---ccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhh--CCCcceeeecccCCCcCeecchh
Confidence            88877   999999999999 99999999999999999976631      11111  23344578999999974333334


Q ss_pred             EecCcEEEEEEcC-cccceeEEeecCCcceeeeeecCCCCccc---ccc-cC----cEEEEeecCCCeEEEEcCCC
Q 020107          260 CMHNGFAVVKVGG-EKAEVLETYAKHGSLAYGADWQRGRSSLE---GKR-KN----SLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       260 ~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~---~~~-~~----~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +..++.....+-+ ...+.-..+-||..++..+.|+|.--+..   +.+ ..    ..+|+|| .|++|.||....
T Consensus       239 A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS-qDrSlSVW~T~~  313 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS-QDRSLSVWNTAL  313 (942)
T ss_pred             hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec-CCccEEEEecCC
Confidence            4555544444322 33566677889999999999999521100   001 11    1677888 999999999754

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=7.1e-26  Score=168.71  Aligned_cols=221  Identities=16%  Similarity=0.204  Sum_probs=185.7

Q ss_pred             eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEE
Q 020107           61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVS  133 (331)
Q Consensus        61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  133 (331)
                      ...+|..+++.+.++.+    +++|.+++.|.++ +|-..+++      .|.+.|+|+..+-+.+.+++|+.|.++++||
T Consensus         5 ~l~GHERplTqiKyN~e----GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNRE----GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEecCC----CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence            45789999999999999    9999999999999 88664433      3899999999999999999999999999999


Q ss_pred             ccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-----CCeEEEEEccCCC-------ceeeeecccCCCcceEEE
Q 020107          134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-----DCKFSGWDIRESP-------FKLAFQNSKIHKMGVCCI  201 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~-------~~~~~~~~~~~~~~v~~~  201 (331)
                      +++++.  +..++ -..+|..+.|++ ++++++.+.+     .+.|.++|++...       +...+..   +.+.++.+
T Consensus        81 v~tGk~--la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t---~~skit~a  153 (327)
T KOG0643|consen   81 VETGKQ--LATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT---PDSKITSA  153 (327)
T ss_pred             cCCCcE--EEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC---Cccceeee
Confidence            999975  66666 456899999998 7777776653     4789999998432       2333433   78999999


Q ss_pred             EEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe
Q 020107          202 ASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY  281 (331)
Q Consensus       202 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (331)
                      -|.| .+..|++|.+||.|..||++++.+.+.. ...|...|+.++++|+. .++++++.|...++|++...  +.++++
T Consensus       154 ~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s-~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl--~v~Kty  228 (327)
T KOG0643|consen  154 LWGP-LGETIIAGHEDGSISIYDARTGKELVDS-DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTL--EVLKTY  228 (327)
T ss_pred             eecc-cCCEEEEecCCCcEEEEEcccCceeeec-hhhhccccccccccCCc-ceEEecccCccceeeeccce--eeEEEe
Confidence            9999 9999999999999999999997444443 57899999999999997 78888888999899999884  777777


Q ss_pred             ecCCcceeeeeecCCCC
Q 020107          282 AKHGSLAYGADWQRGRS  298 (331)
Q Consensus       282 ~~h~~~v~~~~~~~~~~  298 (331)
                      .. ..+|++.+++|...
T Consensus       229 ~t-e~PvN~aaisP~~d  244 (327)
T KOG0643|consen  229 TT-ERPVNTAAISPLLD  244 (327)
T ss_pred             ee-cccccceecccccc
Confidence            75 67899999999874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.8e-26  Score=176.14  Aligned_cols=249  Identities=16%  Similarity=0.159  Sum_probs=215.1

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      +...+.+|..+|+.++-...    ..++.+++.|.+. ||.++++.+      |.+.|++++|++.+.++++++.|++..
T Consensus       140 lvre~~GHkDGiW~Vaa~~t----qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH  215 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADST----QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH  215 (481)
T ss_pred             ehhhhcccccceeeehhhcC----CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence            44556899999999998887    6799999999999 999999876      789999999999999999999999999


Q ss_pred             EEEcc------cc--------------------------------ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC
Q 020107          131 IVSVV------ES--------------------------------QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC  172 (331)
Q Consensus       131 i~d~~------~~--------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  172 (331)
                      ||...      .+                                -..++..+.+|...|.+..|-. .++.+++++-|.
T Consensus       216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDR  294 (481)
T ss_pred             HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccc
Confidence            99721      10                                0135667889999999999996 889999999999


Q ss_pred             eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC
Q 020107          173 KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI  252 (331)
Q Consensus       173 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  252 (331)
                      +..+||++++..+..+..   |....+.++-+| ..+++++.+.|.+.++||++.. -+....+.+|...|+++.|.-+ 
T Consensus       295 TAnlwDVEtge~v~~LtG---Hd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea-I~sV~VFQGHtdtVTS~vF~~d-  368 (481)
T KOG0300|consen  295 TANLWDVETGEVVNILTG---HDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA-IQSVAVFQGHTDTVTSVVFNTD-  368 (481)
T ss_pred             cceeeeeccCceeccccC---cchhccccccCC-cceEEEEeccCceeEeccchhh-cceeeeecccccceeEEEEecC-
Confidence            999999999998888887   999999999999 9999999999999999999964 3444457899999999999998 


Q ss_pred             CCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107          253 PGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT  330 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~  330 (331)
                       ..+++++.|..+++|++.+. ..++.+++. .+++..++.+...         ..|+.-- ++..|++||++...+.
T Consensus       369 -d~vVSgSDDrTvKvWdLrNM-RsplATIRt-dS~~NRvavs~g~---------~iIAiPh-DNRqvRlfDlnG~Rla  433 (481)
T KOG0300|consen  369 -DRVVSGSDDRTVKVWDLRNM-RSPLATIRT-DSPANRVAVSKGH---------PIIAIPH-DNRQVRLFDLNGNRLA  433 (481)
T ss_pred             -CceeecCCCceEEEeeeccc-cCcceeeec-CCccceeEeecCC---------ceEEecc-CCceEEEEecCCCccc
Confidence             77888888889999999997 566777764 5788999999987         4888888 8899999999877654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.6e-25  Score=160.41  Aligned_cols=239  Identities=19%  Similarity=0.293  Sum_probs=187.5

Q ss_pred             ecCcEeEEEEcCCCCCCCCeEEEEcCCccE-------EEecCC---------------CcccCccEEEEEEcCCCCeEEE
Q 020107           65 DTAGIFDIKWSPVGGNAGPFLAQADADGGL-------LRDITG---------------EKISSSMCLCLEWNPSATSITV  122 (331)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-------iw~~~~---------------~~~~~~~v~~~~~~~~~~~l~~  122 (331)
                      ....|.+++|+|.    +.+.++|+...+.       +-+++.               .+.|.+.|+|.+|+|.|++|++
T Consensus        31 dsqairav~fhp~----g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat  106 (350)
T KOG0641|consen   31 DSQAIRAVAFHPA----GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT  106 (350)
T ss_pred             chhheeeEEecCC----CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence            4577999999999    8999999998887       333321               2236889999999999999999


Q ss_pred             EecCCeEEEEEccccce---eeeeeeecccceeEEEeeCCC---CCcEEEEEc-CCCeEEEEEccCCCceeeeecccCCC
Q 020107          123 GLSDGSVSIVSVVESQL---EVLQQWKAHEFELWATSFDVH---QPHMVYTGS-DDCKFSGWDIRESPFKLAFQNSKIHK  195 (331)
Q Consensus       123 ~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~  195 (331)
                      |+.|.+|++.-.+....   -+-.++..|.+.|..++|-..   .+.+|++++ .|..|++-|...++....+..   |.
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg---ht  183 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG---HT  183 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC---Cc
Confidence            99999999977654322   123567889999999999732   245666655 577888888888887777766   99


Q ss_pred             cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee-eec-----CCceEEEEECCCCCCeEEEEE-ecCcEEEE
Q 020107          196 MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS-VCL-----GGGVWRIKHHPFIPGLVLAAC-MHNGFAVV  268 (331)
Q Consensus       196 ~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~  268 (331)
                      +.|.++-- - ++-++++|+.|.+|++||++-. ..+.... ..|     ...|.+++..|.+  .++++| .+....+|
T Consensus       184 ghilalys-w-n~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsg--rll~sg~~dssc~ly  258 (350)
T KOG0641|consen  184 GHILALYS-W-NGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSG--RLLASGHADSSCMLY  258 (350)
T ss_pred             ccEEEEEE-e-cCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCc--ceeeeccCCCceEEE
Confidence            99988742 2 6789999999999999999974 3333311 112     2568999999994  455555 56667889


Q ss_pred             EEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          269 KVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       269 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      +++.  ++.++.+..|...|.++.|+|..         .++++|+ .|..|++=|+...
T Consensus       259 dirg--~r~iq~f~phsadir~vrfsp~a---------~yllt~s-yd~~ikltdlqgd  305 (350)
T KOG0641|consen  259 DIRG--GRMIQRFHPHSADIRCVRFSPGA---------HYLLTCS-YDMKIKLTDLQGD  305 (350)
T ss_pred             EeeC--CceeeeeCCCccceeEEEeCCCc---------eEEEEec-ccceEEEeecccc
Confidence            9988  69999999999999999999998         7999999 9999999998754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.3e-25  Score=167.20  Aligned_cols=254  Identities=14%  Similarity=0.181  Sum_probs=195.4

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC----------cccCccEEEEEEcC--CCCeEEEEe
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE----------KISSSMCLCLEWNP--SATSITVGL  124 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~----------~~~~~~v~~~~~~~--~~~~l~~~~  124 (331)
                      +..+..+|..-|.++.|.+.    |+.+|+|+.|+++ ||+....          +.|.+.|..+.|.+  -|+.+|+++
T Consensus         5 ~~pi~s~h~DlihdVs~D~~----GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS   80 (361)
T KOG2445|consen    5 MAPIDSGHKDLIHDVSFDFY----GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS   80 (361)
T ss_pred             ccccccCCcceeeeeeeccc----CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence            44566788999999999999    9999999999999 9996443          23789999999975  688999999


Q ss_pred             cCCeEEEEEccc-------cceeeeeeeecccceeEEEeeCCC-CCcEEEEEcCCCeEEEEEccCCCceeeeec------
Q 020107          125 SDGSVSIVSVVE-------SQLEVLQQWKAHEFELWATSFDVH-QPHMVYTGSDDCKFSGWDIRESPFKLAFQN------  190 (331)
Q Consensus       125 ~dg~i~i~d~~~-------~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------  190 (331)
                      .|+++.||.-..       .++....++......|+++.|.|. -+-.+++++.||.||||+.........++.      
T Consensus        81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen   81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN  160 (361)
T ss_pred             cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence            999999998632       234445566667789999999984 356799999999999999876543333222      


Q ss_pred             ----ccCCCcceEEEEEecC--CCCEEEEEecC-----CeEEEEEecCCCCCcee--eeeecCCceEEEEECCCCC--Ce
Q 020107          191 ----SKIHKMGVCCIASIPS--DSNTLLTGSYD-----EYLRVWDVRSISKPVNE--TSVCLGGGVWRIKHHPFIP--GL  255 (331)
Q Consensus       191 ----~~~~~~~v~~~~~~~~--~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~--~~  255 (331)
                          ...+..+..|+.|+|.  ...+||+|+.+     +.++||......+....  .+..|..+|+.++|.|+-.  ..
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~  240 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH  240 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence                1125667889999983  25678888866     47999988765422221  2458999999999999642  34


Q ss_pred             EEEEEecCcEEEEEEcCcc------------------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107          256 VLAACMHNGFAVVKVGGEK------------------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR  317 (331)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~  317 (331)
                      +++.+..++++||++....                  -+.+..+.+|.+.|+.+.|+-.|         ..|+|.| .||
T Consensus       241 ~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG---------tiLsStG-dDG  310 (361)
T KOG2445|consen  241 LLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG---------TILSSTG-DDG  310 (361)
T ss_pred             eEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee---------eEEeecC-CCc
Confidence            6666666669999997311                  33556677999999999999999         7999999 999


Q ss_pred             eEEEEcCC
Q 020107          318 LLRIWMPE  325 (331)
Q Consensus       318 ~i~iW~~~  325 (331)
                      .||+|...
T Consensus       311 ~VRLWkan  318 (361)
T KOG2445|consen  311 CVRLWKAN  318 (361)
T ss_pred             eeeehhhh
Confidence            99999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=6.4e-26  Score=179.58  Aligned_cols=238  Identities=16%  Similarity=0.183  Sum_probs=189.9

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      .+.||...|.+..++++...+++++          .|-.|+||......  .......|..+|+.+..+|.    +++|+
T Consensus       256 ~~~Gh~kki~~v~~~~~~~~v~~aS----------ad~~i~vws~~~~s--~~~~~~~h~~~V~~ls~h~t----geYll  319 (506)
T KOG0289|consen  256 TLKGHTKKITSVKFHKDLDTVITAS----------ADEIIRVWSVPLSS--EPTSSRPHEEPVTGLSLHPT----GEYLL  319 (506)
T ss_pred             hccCcceEEEEEEeccchhheeecC----------CcceEEeecccccc--CccccccccccceeeeeccC----CcEEE
Confidence            4677877777777777668888888          89999999998876  33445789999999999999    99999


Q ss_pred             EEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEee
Q 020107           87 QADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSF  157 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  157 (331)
                      +++.||.. +.+++++..        ..-.+++.+|+|||..|.+|..||.|++||+.++.  .+..|.+|.++|..++|
T Consensus       320 sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~F  397 (506)
T KOG0289|consen  320 SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISF  397 (506)
T ss_pred             EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEe
Confidence            99999999 777776543        12458899999999999999999999999999875  47889999999999999


Q ss_pred             CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC-CCceeee
Q 020107          158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS-KPVNETS  236 (331)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~  236 (331)
                      +. ++.+++++.+|+.|++||+|..+..+.+...  ...++.++.|.+ .|.+|+.++.|=+|++++-.+.. ..+.. +
T Consensus       398 sE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~-~  472 (506)
T KOG0289|consen  398 SE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKE-L  472 (506)
T ss_pred             cc-CceEEEEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcC-CCCeEEeecceeEEEEEecccccceeeeh-h
Confidence            96 8999999999999999999998877777762  234799999999 99999999887666666643311 22222 3


Q ss_pred             eecCCceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107          237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVV  268 (331)
Q Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  268 (331)
                      ..|.+..+.+.|.... .+++.++.+..++++
T Consensus       473 ~~~sg~st~v~Fg~~a-q~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  473 ADHSGLSTGVRFGEHA-QYLASTSMDAILRLY  503 (506)
T ss_pred             hhcccccceeeecccc-eEEeeccchhheEEe
Confidence            5677888999998874 444444454444443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=5.5e-26  Score=181.03  Aligned_cols=252  Identities=18%  Similarity=0.255  Sum_probs=196.8

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc----------ccCccEEEEEEcCCC-CeEEEEecCC
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK----------ISSSMCLCLEWNPSA-TSITVGLSDG  127 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~----------~~~~~v~~~~~~~~~-~~l~~~~~dg  127 (331)
                      ...+.+.+.|++++|+|..+  .+++|+|..-|.+ +|++.+.+          .|..+|.++.|+|.. ..+++.+.||
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~--~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTEN--RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ceeEecccceEEEEecccCc--ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            34467889999999999853  3689999999999 99996322          268899999999955 5699999999


Q ss_pred             eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecC
Q 020107          128 SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPS  206 (331)
Q Consensus       128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~  206 (331)
                      +|+.-|++....+.+.........+..+.|+. +...++.+..=|...+||+|++.. ...+..   |...|++|+++|.
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l---h~kKI~sv~~NP~  333 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRL---HKKKITSVALNPV  333 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhh---hhcccceeecCCC
Confidence            99999999876655555554556678888886 556666677677999999998765 444555   8999999999999


Q ss_pred             CCCEEEEEecCCeEEEEEecCCCCCc--eeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc--ccceeEEee
Q 020107          207 DSNTLLTGSYDEYLRVWDVRSISKPV--NETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE--KAEVLETYA  282 (331)
Q Consensus       207 ~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  282 (331)
                      ...+|+|++.|++.+|||+|......  ......|...|.+..|||.+ +.++++|.|+.|++|+..-.  ...+..++.
T Consensus       334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~  412 (498)
T KOG4328|consen  334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAKDEPLGTIP  412 (498)
T ss_pred             CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-CceEeeccCCceEEeecccccccCCccceee
Confidence            99999999999999999999853221  12247899999999999998 66999999999999998411  022233322


Q ss_pred             -cCC----cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          283 -KHG----SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       283 -~h~----~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                       .+.    -......|.|+.         .+|+.+- .-..|-|+|-+.+.
T Consensus       413 Hn~~t~RwlT~fKA~W~P~~---------~li~vg~-~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  413 HNNRTGRWLTPFKAAWDPDY---------NLIVVGR-YPRPIDVFDGNGGQ  453 (498)
T ss_pred             ccCcccccccchhheeCCCc---------cEEEEec-cCcceeEEcCCCCE
Confidence             111    134567899987         7999998 89999999988765

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=7.1e-26  Score=192.59  Aligned_cols=291  Identities=18%  Similarity=0.285  Sum_probs=228.4

Q ss_pred             eeeeec-CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCC
Q 020107            4 AHCELD-GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAG   82 (331)
Q Consensus         4 ~~~~~~-~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   82 (331)
                      .++..+ |.+..++|-.+++  .++|+|.          ..|.+.+||++... ....+...|.+.|....|.|.    .
T Consensus       238 ~sFk~d~g~VtslSFrtDG~--p~las~~----------~~G~m~~wDLe~kk-l~~v~~nah~~sv~~~~fl~~----e  300 (910)
T KOG1539|consen  238 MSFKQDWGRVTSLSFRTDGN--PLLASGR----------SNGDMAFWDLEKKK-LINVTRNAHYGSVTGATFLPG----E  300 (910)
T ss_pred             EEEEccccceeEEEeccCCC--eeEEecc----------CCceEEEEEcCCCe-eeeeeeccccCCcccceecCC----C
Confidence            445554 8899999998886  6888887          78999999999886 455566689999999999999    8


Q ss_pred             CeEEEEcCCccE-EEecCC----------CcccCccEEEEEEc-CCCCeEEEEecCCeEEEEEcccc-------------
Q 020107           83 PFLAQADADGGL-LRDITG----------EKISSSMCLCLEWN-PSATSITVGLSDGSVSIVSVVES-------------  137 (331)
Q Consensus        83 ~~l~~~~~dg~i-iw~~~~----------~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~-------------  137 (331)
                      ..+++++.|..+ +|-..+          ...|..+..++.|. .++..+.+++.|++.+.+++...             
T Consensus       301 pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~  380 (910)
T KOG1539|consen  301 PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK  380 (910)
T ss_pred             ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc
Confidence            899999999998 444332          22366777777776 46666777777776666654320             


Q ss_pred             -------------ceeeeee-------------------------------------------eecccceeEEEeeCCCC
Q 020107          138 -------------QLEVLQQ-------------------------------------------WKAHEFELWATSFDVHQ  161 (331)
Q Consensus       138 -------------~~~~~~~-------------------------------------------~~~~~~~v~~~~~~~~~  161 (331)
                                   +.+++..                                           ++.-...+++++.++ .
T Consensus       381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-C  459 (910)
T KOG1539|consen  381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-C  459 (910)
T ss_pred             ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-c
Confidence                         0000000                                           111225678888887 8


Q ss_pred             CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107          162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG  241 (331)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  241 (331)
                      +++.+.|+..|.|-+|++.++-....+...+.|..+|+.++... .++.+++++.+|.+++||+.+. .++..  .....
T Consensus       460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k-~l~~~--l~l~~  535 (910)
T KOG1539|consen  460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKK-VLKKS--LRLGS  535 (910)
T ss_pred             CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCc-ceeee--eccCC
Confidence            89999999999999999999977777754466999999999987 7889999999999999999973 44444  55667


Q ss_pred             ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107          242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI  321 (331)
Q Consensus       242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i  321 (331)
                      .+..+..+... .++++++.+-.|.++++..  .+.++.+.+|.+.|++++|||++         ++|++++ .|++|++
T Consensus       536 ~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t--~kvvR~f~gh~nritd~~FS~Dg---------rWlisas-mD~tIr~  602 (910)
T KOG1539|consen  536 SITGIVYHRVS-DLLAIALDDFSIRVVDVVT--RKVVREFWGHGNRITDMTFSPDG---------RWLISAS-MDSTIRT  602 (910)
T ss_pred             Ccceeeeeehh-hhhhhhcCceeEEEEEchh--hhhhHHhhccccceeeeEeCCCC---------cEEEEee-cCCcEEE
Confidence            78888888775 7777777888888888776  48889999999999999999999         8999999 9999999


Q ss_pred             EcCCCccc
Q 020107          322 WMPESDCL  329 (331)
Q Consensus       322 W~~~~~~~  329 (331)
                      ||+.++.+
T Consensus       603 wDlpt~~l  610 (910)
T KOG1539|consen  603 WDLPTGTL  610 (910)
T ss_pred             EeccCcce
Confidence            99998764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.6e-26  Score=180.81  Aligned_cols=239  Identities=18%  Similarity=0.268  Sum_probs=191.2

Q ss_pred             eEEEEcCCCCCCCCeEEEEcCCccE----EEecCCCc--c--c-----CccEEEEEEcC-------CCCeEEEEecCCeE
Q 020107           70 FDIKWSPVGGNAGPFLAQADADGGL----LRDITGEK--I--S-----SSMCLCLEWNP-------SATSITVGLSDGSV  129 (331)
Q Consensus        70 ~~~~~~~~~~~~~~~l~~~~~dg~i----iw~~~~~~--~--~-----~~~v~~~~~~~-------~~~~l~~~~~dg~i  129 (331)
                      -.+..-|+    ..+|+++-.+..+    +|-.....  .  |     .....|++|..       .|+++|.|+.|-.|
T Consensus       129 de~~V~ps----DnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I  204 (463)
T KOG0270|consen  129 DEEQVKPS----DNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI  204 (463)
T ss_pred             ccceeccC----CcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence            45556665    5566666554444    44433322  1  2     34446777753       36799999999999


Q ss_pred             EEEEcccc-ceeeeee------------------eecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec
Q 020107          130 SIVSVVES-QLEVLQQ------------------WKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN  190 (331)
Q Consensus       130 ~i~d~~~~-~~~~~~~------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  190 (331)
                      .|||+.-. ...|...                  ..+|+..|.+++|+..-.+.|++|+.|.+|++||+.++++...+..
T Consensus       205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~  284 (463)
T KOG0270|consen  205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH  284 (463)
T ss_pred             EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence            99998641 1111111                  2358888999999987789999999999999999999999888887


Q ss_pred             ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                         |...|.++.|+|..+.+|++|+.|++|.+.|.|.....-..  -...+.|-.++|.|..+..++++..++.++-+++
T Consensus       285 ---~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~  359 (463)
T KOG0270|consen  285 ---HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDI  359 (463)
T ss_pred             ---cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce--EEeccceEEEEecCCCceeEEEecCCceEEeeec
Confidence               99999999999988999999999999999999964333333  5678899999999998888888888888888999


Q ss_pred             cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      +.. ++++.+++.|.+.|.++++++..+        .+++|+| .|+.|++|++...
T Consensus       360 R~~-~~~vwt~~AHd~~ISgl~~n~~~p--------~~l~t~s-~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  360 RNP-GKPVWTLKAHDDEISGLSVNIQTP--------GLLSTAS-TDKVVKLWKFDVD  406 (463)
T ss_pred             CCC-CCceeEEEeccCCcceEEecCCCC--------cceeecc-ccceEEEEeecCC
Confidence            887 699999999999999999999988        8999999 9999999998653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.95  E-value=4.5e-25  Score=166.40  Aligned_cols=300  Identities=15%  Similarity=0.163  Sum_probs=223.7

Q ss_pred             ceeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEE-eEeeecCcEeEEEEcCCCCCC
Q 020107            3 VAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL-LYRMDTAGIFDIKWSPVGGNA   81 (331)
Q Consensus         3 ~~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~   81 (331)
                      +.++.-..+..++.|+.....+.+||.|++....      .+.|.|..++.....+.. ....|..+++.+.|.|+..+.
T Consensus        38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~------~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~  111 (364)
T KOG0290|consen   38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEY------NNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGV  111 (364)
T ss_pred             EEEecCCCceeeeccccCCCcceeEEEeeecccc------CCeeEEEEEccCCCceeccCCCCCCCCccceEecCCcccc
Confidence            4555667788999999775555799999975444      678888887754422222 223578899999999985311


Q ss_pred             -CCeEEEEcCCccEEEecCCCc---------------ccCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccce-eeee
Q 020107           82 -GPFLAQADADGGLLRDITGEK---------------ISSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQL-EVLQ  143 (331)
Q Consensus        82 -~~~l~~~~~dg~iiw~~~~~~---------------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~  143 (331)
                       -++||+.+ |---+|.+...+               ....++++..|+. +-++|.+++-|-+..|||++++.. ....
T Consensus       112 ~pdlLATs~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT  190 (364)
T KOG0290|consen  112 YPDLLATSS-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT  190 (364)
T ss_pred             Ccchhhccc-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence             23555543 322288876321               1357888999987 446688888899999999998622 1245


Q ss_pred             eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC-eEEE
Q 020107          144 QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-YLRV  222 (331)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i  222 (331)
                      .+-.|+.+|..++|.....+.|++++.||.+|+||+|...-..++...+....+...++|++++.+++|+-..|. .|.+
T Consensus       191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i  270 (364)
T KOG0290|consen  191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI  270 (364)
T ss_pred             EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence            567899999999999866789999999999999999986644444432333678999999999999999988765 6999


Q ss_pred             EEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc----ceeEEeecCCcceeeeeecCCCC
Q 020107          223 WDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA----EVLETYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       223 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~  298 (331)
                      .|+|....++.+ +..|.+.|+.++|.|.....+.++|.|....+|++.....    .++..+. -.+.|..+.|++..+
T Consensus       271 LDiR~P~tpva~-L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~  348 (364)
T KOG0290|consen  271 LDIRVPCTPVAR-LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQP  348 (364)
T ss_pred             EEecCCCcceeh-hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCC
Confidence            999998788877 7899999999999999877888887777788899876522    2233333 456899999998876


Q ss_pred             cccccccCcEEEEeecCCCeEEE
Q 020107          299 SLEGKRKNSLVATCSFYDRLLRI  321 (331)
Q Consensus       299 ~~~~~~~~~~l~s~~~~d~~i~i  321 (331)
                              .+++.+.  ++.+.+
T Consensus       349 --------Dwiai~~--~kklei  361 (364)
T KOG0290|consen  349 --------DWIAICF--GKKLEI  361 (364)
T ss_pred             --------CEEEEEe--cCeeeE
Confidence                    7898886  666554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=1.6e-25  Score=184.08  Aligned_cols=283  Identities=13%  Similarity=0.181  Sum_probs=211.9

Q ss_pred             eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107            4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      +.+.+.||...|......|.|.+||+|+          .||+|+||.+.++. ++..+  ...+.|.+++|+|...  ..
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGs----------dDGtvriWEi~TgR-cvr~~--~~d~~I~~vaw~P~~~--~~  456 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGS----------DDGTVRIWEIATGR-CVRTV--QFDSEIRSVAWNPLSD--LC  456 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecC----------CCCcEEEEEeecce-EEEEE--eecceeEEEEecCCCC--ce
Confidence            4456677777777777777779999999          89999999999986 55554  2346899999999842  33


Q ss_pred             eEEEEcCCccE---------------------------------EEecCCC---c-------ccCccEEEEEEcCCCCeE
Q 020107           84 FLAQADADGGL---------------------------------LRDITGE---K-------ISSSMCLCLEWNPSATSI  120 (331)
Q Consensus        84 ~l~~~~~dg~i---------------------------------iw~~~~~---~-------~~~~~v~~~~~~~~~~~l  120 (331)
                      +||++..+..+                                 .|.-...   +       .|...|..+.|+..|.+|
T Consensus       457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl  536 (733)
T KOG0650|consen  457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL  536 (733)
T ss_pred             eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence            56665554422                                 1221100   0       146778899999999999


Q ss_pred             EEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcc
Q 020107          121 TVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMG  197 (331)
Q Consensus       121 ~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  197 (331)
                      ++...   ...|.|+++...+.  ...|....+.|.++.|+| ...+|++++ ...|+|||+......+.+..   ....
T Consensus       537 atV~~~~~~~~VliHQLSK~~s--Q~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~t---g~kw  609 (733)
T KOG0650|consen  537 ATVMPDSGNKSVLIHQLSKRKS--QSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLT---GSKW  609 (733)
T ss_pred             EEeccCCCcceEEEEecccccc--cCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhc---CCee
Confidence            98866   45788999986543  344544566799999999 555566555 57899999998665555554   5778


Q ss_pred             eEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec-CcEEEEEEcCcc--
Q 020107          198 VCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH-NGFAVVKVGGEK--  274 (331)
Q Consensus       198 v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--  274 (331)
                      |.+++.+| .|..|+.|+.|+.+..||+.-..+|... +..|...+++++|++.  .-|++++++ +.+.++.-.-.+  
T Consensus       610 iS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~-lr~H~~avr~Va~H~r--yPLfas~sdDgtv~Vfhg~VY~Dl  685 (733)
T KOG0650|consen  610 ISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKT-LRLHEKAVRSVAFHKR--YPLFASGSDDGTVIVFHGMVYNDL  685 (733)
T ss_pred             eeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHH-hhhhhhhhhhhhhccc--cceeeeecCCCcEEEEeeeeehhh
Confidence            99999999 9999999999999999999987777776 6789999999999998  556666666 555554432111  


Q ss_pred             -----cceeEEeecCCcc----eeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107          275 -----AEVLETYAKHGSL----AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       275 -----~~~~~~~~~h~~~----v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW  322 (331)
                           --++..+++|...    |.++.|+|..+         +|.|+| .||+|++|
T Consensus       686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp---------WLfsAG-Ad~tirlf  732 (733)
T KOG0650|consen  686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP---------WLFSAG-ADGTIRLF  732 (733)
T ss_pred             hcCCceEeeeeccCceeecccceEeecccCCCc---------eEEecC-CCceEEee
Confidence                 2356677888765    89999999985         888888 89999998

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=3.2e-26  Score=178.23  Aligned_cols=212  Identities=15%  Similarity=0.189  Sum_probs=167.1

Q ss_pred             CccEEEEEEcCCCC--eEEEEecCCeEEEEEccc--------------cceeeeeeeecccceeEEEeeCCCCCcEEEEE
Q 020107          105 SSMCLCLEWNPSAT--SITVGLSDGSVSIVSVVE--------------SQLEVLQQWKAHEFELWATSFDVHQPHMVYTG  168 (331)
Q Consensus       105 ~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  168 (331)
                      .+.++.+.-++.++  +.++=+..|.|.||++..              .+..++.++.+|...-+.++|+|.....+++|
T Consensus       151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG  230 (440)
T KOG0302|consen  151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG  230 (440)
T ss_pred             ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence            44455555555443  344445689999999864              23456888899999999999999666778999


Q ss_pred             cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEE
Q 020107          169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKH  248 (331)
Q Consensus       169 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  248 (331)
                      ..-+.|++|...++.-..--..+.+|...|-.++|+|.....|++|+.||+|+|||+|...+........|.+.|+-|.|
T Consensus       231 Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISW  310 (440)
T KOG0302|consen  231 DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISW  310 (440)
T ss_pred             ccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEc
Confidence            98999999999887543222223349999999999997788999999999999999999744433334899999999999


Q ss_pred             CCCCCCeEEEEEecCcEEEEEEcCcc-cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          249 HPFIPGLVLAACMHNGFAVVKVGGEK-AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +... .+|++++.++.+++|+++..+ ++++.+|+.|..+|+++.|+|...        ..|+++| .|.+|.+||+.-
T Consensus       311 nr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~--------s~iaasg-~D~QitiWDlsv  379 (440)
T KOG0302|consen  311 NRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED--------SVIAASG-EDNQITIWDLSV  379 (440)
T ss_pred             cCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC--------ceEEecc-CCCcEEEEEeec
Confidence            9986 355555566667888887754 678999999999999999999876        7888888 899999999864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=9.4e-27  Score=171.88  Aligned_cols=243  Identities=17%  Similarity=0.213  Sum_probs=204.3

Q ss_pred             EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC------cccCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107           59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE------KISSSMCLCLEWNPSATSITVGLSDGSVSI  131 (331)
Q Consensus        59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  131 (331)
                      .....+|+.+|..++|+|-.|. +-+|++++.||.. +.+-.++      ..|++.|++...+.+....++++.|-+-++
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~-g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv   85 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPD-GYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV   85 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCC-ceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence            3456789999999999997766 8899999999999 6655554      348899999999988888999999999999


Q ss_pred             EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCE
Q 020107          132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                      ||.-++..  +..+. |...|.+++|+. +.++|++|+.+..+||||++..+. ...+.   +|.+.|..+.|.. ..+.
T Consensus        86 w~a~tgde--lhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~---ghtg~Ir~v~wc~-eD~~  157 (334)
T KOG0278|consen   86 WDAVTGDE--LHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEIS---GHTGGIRTVLWCH-EDKC  157 (334)
T ss_pred             hhhhhhhh--hhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhc---CCCCcceeEEEec-cCce
Confidence            99998854  66665 888999999996 889999999999999999997764 23344   4999999999998 7778


Q ss_pred             EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceee
Q 020107          211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG  290 (331)
Q Consensus       211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  290 (331)
                      +++.+.|++||+||.+++ ..+..  .....+|+++..+++  +.+++.....++.+|+....  .++..++- ...|.+
T Consensus       158 iLSSadd~tVRLWD~rTg-t~v~s--L~~~s~VtSlEvs~d--G~ilTia~gssV~Fwdaksf--~~lKs~k~-P~nV~S  229 (334)
T KOG0278|consen  158 ILSSADDKTVRLWDHRTG-TEVQS--LEFNSPVTSLEVSQD--GRILTIAYGSSVKFWDAKSF--GLLKSYKM-PCNVES  229 (334)
T ss_pred             EEeeccCCceEEEEeccC-cEEEE--EecCCCCcceeeccC--CCEEEEecCceeEEeccccc--cceeeccC-cccccc
Confidence            888899999999999996 55555  677889999999999  66777777788888887774  56666653 467899


Q ss_pred             eeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ...+|+.         .+++.|+ +|..++.||..++.
T Consensus       230 ASL~P~k---------~~fVaGg-ed~~~~kfDy~Tge  257 (334)
T KOG0278|consen  230 ASLHPKK---------EFFVAGG-EDFKVYKFDYNTGE  257 (334)
T ss_pred             ccccCCC---------ceEEecC-cceEEEEEeccCCc
Confidence            9999998         6999999 99999999999875

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.9e-25  Score=170.27  Aligned_cols=278  Identities=15%  Similarity=0.203  Sum_probs=202.3

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      +..|++|++.+   .+||+|.          .||.|.|||+.+..  +..++.+|..+|.+++||++    +++|++++.
T Consensus        25 ~a~~~~Fs~~G---~~lAvGc----------~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~d----gr~LltsS~   85 (405)
T KOG1273|consen   25 LAECCQFSRWG---DYLAVGC----------ANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSRD----GRKLLTSSR   85 (405)
T ss_pred             ccceEEeccCc---ceeeeec----------cCCcEEEEEccccc--hhhhhhccccceeEEEecCC----CCEeeeecC
Confidence            47788888888   8999998          89999999999986  66777899999999999999    999999999


Q ss_pred             CccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeee-c-ccceeEEEeeCCCC
Q 020107           91 DGGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWK-A-HEFELWATSFDVHQ  161 (331)
Q Consensus        91 dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~  161 (331)
                      |..+ +||+..+.+.     .++|+...|+|.....++++- +..-.+.++..++...+..-. + -.....+..|.+ .
T Consensus        86 D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~  164 (405)
T KOG1273|consen   86 DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-R  164 (405)
T ss_pred             CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-C
Confidence            9999 9999988763     788999999996654433332 444555555543211111100 0 111222345776 8


Q ss_pred             CcEEEEEcCCCeEEEEEccCCCceeeeecccCCC-cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC-----ce--
Q 020107          162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK-MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP-----VN--  233 (331)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~--  233 (331)
                      ++++++|...|.+.++|..+.+++..++.   .. ..|..+.++. .+..|+..+.|..||.|+++....+     +.  
T Consensus       165 g~yIitGtsKGkllv~~a~t~e~vas~ri---ts~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~  240 (405)
T KOG1273|consen  165 GKYIITGTSKGKLLVYDAETLECVASFRI---TSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPE  240 (405)
T ss_pred             CCEEEEecCcceEEEEecchheeeeeeee---chheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChh
Confidence            89999999999999999999988888776   34 7899999998 9999999999999999998742111     00  


Q ss_pred             -ee-eeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCC-cceeeeeecCCCCcccccccCcEE
Q 020107          234 -ET-SVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHG-SLAYGADWQRGRSSLEGKRKNSLV  309 (331)
Q Consensus       234 -~~-~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l  309 (331)
                       .+ ..-....-.+++|+.++ .++++++ ....+++|.-  ..+.+++.+.|.. ....++.|+|-.+         .+
T Consensus       241 ~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~--~~GsLVKILhG~kgE~l~DV~whp~rp---------~i  308 (405)
T KOG1273|consen  241 HKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEK--SIGSLVKILHGTKGEELLDVNWHPVRP---------II  308 (405)
T ss_pred             HHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEec--CCcceeeeecCCchhheeeccccccee---------ee
Confidence             00 00112234568888885 3333332 2233334433  3388999998877 6788999999984         77


Q ss_pred             EEeecCCCeEEEEcCCC
Q 020107          310 ATCSFYDRLLRIWMPES  326 (331)
Q Consensus       310 ~s~~~~d~~i~iW~~~~  326 (331)
                      ++..  .|.|++|....
T Consensus       309 ~si~--sg~v~iw~~~~  323 (405)
T KOG1273|consen  309 ASIA--SGVVYIWAVVQ  323 (405)
T ss_pred             eecc--CCceEEEEeec
Confidence            7775  89999998754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.5e-26  Score=188.87  Aligned_cols=237  Identities=16%  Similarity=0.146  Sum_probs=199.6

Q ss_pred             EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107           71 DIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES  137 (331)
Q Consensus        71 ~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  137 (331)
                      ++..+..+   +++|++|+.||.+ +|+.....            .|..-|..+....+++.|++++.|-+|++|+....
T Consensus        29 ~Lq~da~~---~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~  105 (735)
T KOG0308|consen   29 ALQLDAPN---GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKD  105 (735)
T ss_pred             hccccCCC---CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccC
Confidence            44444443   6789999999999 99876532            25666777888888999999999999999999876


Q ss_pred             ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc--eee------eecccCCCcceEEEEEecCCCC
Q 020107          138 QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF--KLA------FQNSKIHKMGVCCIASIPSDSN  209 (331)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~------~~~~~~~~~~v~~~~~~~~~~~  209 (331)
                      .--++..+..|...|.|+++-..+..++++|+-|+.|.+||+.++..  ...      -....++...|++++.++ .+.
T Consensus       106 ~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t  184 (735)
T KOG0308|consen  106 NTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGT  184 (735)
T ss_pred             cchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cce
Confidence            43457788899999999999434788999999999999999997732  111      111225888999999999 899


Q ss_pred             EEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCccee
Q 020107          210 TLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAY  289 (331)
Q Consensus       210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  289 (331)
                      .+++|+..+.+++||.++.++.+..  .+|...|..+..+++| ..++++++|+.|++|++..  .+++.++..|...|+
T Consensus       185 ~ivsGgtek~lr~wDprt~~kimkL--rGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgq--QrCl~T~~vH~e~VW  259 (735)
T KOG0308|consen  185 IIVSGGTEKDLRLWDPRTCKKIMKL--RGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQ--QRCLATYIVHKEGVW  259 (735)
T ss_pred             EEEecCcccceEEeccccccceeee--eccccceEEEEEcCCC-CeEeecCCCceEEeeeccc--cceeeeEEeccCceE
Confidence            9999999999999999997665554  7999999999999998 7889999999999999988  589999999999999


Q ss_pred             eeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ++..+|+-         ..+.+|+ .||.|..=|+.+
T Consensus       260 aL~~~~sf---------~~vYsG~-rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  260 ALQSSPSF---------THVYSGG-RDGNIYRTDLRN  286 (735)
T ss_pred             EEeeCCCc---------ceEEecC-CCCcEEecccCC
Confidence            99999988         6999999 999999888776

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.3e-24  Score=177.97  Aligned_cols=279  Identities=16%  Similarity=0.179  Sum_probs=218.5

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee-cCcEeEEEEcCCCCCCCCeEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD-TAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      ...+.+++++..+   +.||++-          .+|.|.+|++...- -...+..++ ...|.+++|++.     ..|.+
T Consensus        25 Ps~I~slA~s~kS---~~lAvsR----------t~g~IEiwN~~~~w-~~~~vi~g~~drsIE~L~W~e~-----~RLFS   85 (691)
T KOG2048|consen   25 PSEIVSLAYSHKS---NQLAVSR----------TDGNIEIWNLSNNW-FLEPVIHGPEDRSIESLAWAEG-----GRLFS   85 (691)
T ss_pred             ccceEEEEEeccC---Cceeeec----------cCCcEEEEccCCCc-eeeEEEecCCCCceeeEEEccC-----CeEEe
Confidence            4567788888877   7899997          89999999998864 333343444 456999999954     58889


Q ss_pred             EcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      .+.+|.+ .||+.+.+.      ..+.|++++.+|.+..+++|+.||.+..++...++......+....+.|.+++|+| 
T Consensus        86 ~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-  164 (691)
T KOG2048|consen   86 SGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-  164 (691)
T ss_pred             ecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-
Confidence            9999999 999988654      47889999999999999999999988888888887766667766778999999999 


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeee-----ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAF-----QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  235 (331)
                      ++..+++|+.||.|++||..++......     ...+....-|.++.+-.  ...|++|..-|+|.+||...+ ..+.. 
T Consensus       165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~g-TLiqS-  240 (691)
T KOG2048|consen  165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFG-TLIQS-  240 (691)
T ss_pred             CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCc-chhhh-
Confidence            7788999999999999999988765522     22111334577888874  568999999999999999986 33433 


Q ss_pred             eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc--eeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107          236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE--VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                      ...|.+.|.+++-.+++ ..++++|.+..+..+.......+  .......|...|.+++..++           .+++||
T Consensus       241 ~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-----------~l~sgG  308 (691)
T KOG2048|consen  241 HSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-----------ALISGG  308 (691)
T ss_pred             hhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-----------eEEecc
Confidence            47899999999999987 78889999999666665543221  22233468888889888876           688888


Q ss_pred             cCCCeEEEEcC
Q 020107          314 FYDRLLRIWMP  324 (331)
Q Consensus       314 ~~d~~i~iW~~  324 (331)
                       .|..+.+=..
T Consensus       309 -~d~~l~i~~s  318 (691)
T KOG2048|consen  309 -RDFTLAICSS  318 (691)
T ss_pred             -eeeEEEEccc
Confidence             8888876544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=2.1e-26  Score=185.74  Aligned_cols=240  Identities=16%  Similarity=0.220  Sum_probs=196.4

Q ss_pred             eecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc-----------cCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107           64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI-----------SSSMCLCLEWNPSATSITVGLSDGSVSIV  132 (331)
Q Consensus        64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  132 (331)
                      .|..-|.++..+..    .+.+.+|+..+.-+|++.....           ....|.++...|||+.|++|++-.++.||
T Consensus       417 ~HGEvVcAvtIS~~----trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW  492 (705)
T KOG0639|consen  417 AHGEVVCAVTISNP----TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW  492 (705)
T ss_pred             ccCcEEEEEEecCC----cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence            36677889999988    8899999886666999976422           24567888999999999999999999999


Q ss_pred             EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107          133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL  212 (331)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  212 (331)
                      |+..........+.......++++.+| +.++.+++..||.|.|||+++...+..|+.   |.+.+.||.+++ +|..|-
T Consensus       493 DLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqG---htDGascIdis~-dGtklW  567 (705)
T KOG0639|consen  493 DLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCIDISK-DGTKLW  567 (705)
T ss_pred             eccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccC---CCCCceeEEecC-CCceee
Confidence            999876544455555556788999999 889999999999999999999887777777   999999999999 999999


Q ss_pred             EEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeee
Q 020107          213 TGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGAD  292 (331)
Q Consensus       213 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  292 (331)
                      ||+.|.+||.||++.+.+ +.+  ..+...|.++-++|.+  -.++.|+.++ .+|-+... +.....+.-|.+-|.++.
T Consensus       568 TGGlDntvRcWDlregrq-lqq--hdF~SQIfSLg~cP~~--dWlavGMens-~vevlh~s-kp~kyqlhlheScVLSlK  640 (705)
T KOG0639|consen  568 TGGLDNTVRCWDLREGRQ-LQQ--HDFSSQIFSLGYCPTG--DWLAVGMENS-NVEVLHTS-KPEKYQLHLHESCVLSLK  640 (705)
T ss_pred             cCCCccceeehhhhhhhh-hhh--hhhhhhheecccCCCc--cceeeecccC-cEEEEecC-CccceeecccccEEEEEE
Confidence            999999999999999744 444  6788899999999995  4555565554 13333333 455566778999999999


Q ss_pred             ecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      |.+.+         +++++.| .|..+..|...-|..
T Consensus       641 Fa~cG---------kwfvStG-kDnlLnawrtPyGas  667 (705)
T KOG0639|consen  641 FAYCG---------KWFVSTG-KDNLLNAWRTPYGAS  667 (705)
T ss_pred             ecccC---------ceeeecC-chhhhhhccCccccc
Confidence            99999         7999999 999999999876543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.9e-24  Score=164.72  Aligned_cols=255  Identities=15%  Similarity=0.196  Sum_probs=192.6

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +..|..+|.....+.  .++|+|+          .|-+|+|||+.... .+..+ -.|.+.|+++.|.+...  ...|++
T Consensus        39 ~~aH~~sitavAVs~--~~~aSGs----------sDetI~IYDm~k~~-qlg~l-l~HagsitaL~F~~~~S--~shLlS  102 (362)
T KOG0294|consen   39 FSAHAGSITALAVSG--PYVASGS----------SDETIHIYDMRKRK-QLGIL-LSHAGSITALKFYPPLS--KSHLLS  102 (362)
T ss_pred             ccccccceeEEEecc--eeEeccC----------CCCcEEEEeccchh-hhcce-eccccceEEEEecCCcc--hhheee
Confidence            344444444444432  7999998          89999999999876 45544 46899999999999821  228999


Q ss_pred             EcCCccE-EEecCC------CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           88 ADADGGL-LRDITG------EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        88 ~~~dg~i-iw~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      |+.||.+ +|+...      .+.|...|+.++.+|.+++.++.+.|+.++.|++-.++...+..+. +  ..+.+.|+| 
T Consensus       103 ~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~--~at~v~w~~-  178 (362)
T KOG0294|consen  103 GSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-N--KATLVSWSP-  178 (362)
T ss_pred             ecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-C--cceeeEEcC-
Confidence            9999999 998765      3457888999999999999999999999999999998765555554 2  234599998 


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      .+.+++.+.. ..|-+|.+.+......+..    ...+.++.|.  ++..|++|+.|+.|++||... ..++.. +.+|.
T Consensus       179 ~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~----~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds-~~~~~~-~~AH~  249 (362)
T KOG0294|consen  179 QGDHFVVSGR-NKIDIYQLDNASVFREIEN----PKRILCATFL--DGSELLVGGDNEWISLKDTDS-DTPLTE-FLAHE  249 (362)
T ss_pred             CCCEEEEEec-cEEEEEecccHhHhhhhhc----cccceeeeec--CCceEEEecCCceEEEeccCC-Ccccee-eecch
Confidence            6777776664 4688999987765444443    4567777776  688999999999999999998 466665 68999


Q ss_pred             CceEEEEEC--CCCCCeEEEEEecCcEEEEEEcCcc---cceeEEeecCCcceeeeee
Q 020107          241 GGVWRIKHH--PFIPGLVLAACMHNGFAVVKVGGEK---AEVLETYAKHGSLAYGADW  293 (331)
Q Consensus       241 ~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~  293 (331)
                      .+|..+.+-  |++ .+++++++++.|++|++....   +.++..+.. ...++++..
T Consensus       250 ~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  250 NRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             hheeeeEEEecCCc-eEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence            999999843  343 688888999999999997642   344554443 445555543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=1.4e-24  Score=181.26  Aligned_cols=292  Identities=15%  Similarity=0.209  Sum_probs=220.5

Q ss_pred             eecCcce---eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-----------------------c---
Q 020107            7 ELDGNAD---AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-----------------------N---   57 (331)
Q Consensus         7 ~~~~~~~---~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-----------------------~---   57 (331)
                      .++||.+   +++|...+.+.-+||+++          .|..||||.+.....                       .   
T Consensus       186 el~GH~DWIrsl~f~~~~~~~~~laS~S----------QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~  255 (764)
T KOG1063|consen  186 ELEGHTDWIRSLAFARLGGDDLLLASSS----------QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQY  255 (764)
T ss_pred             EeeccchhhhhhhhhccCCCcEEEEecC----------CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEE
Confidence            5667654   555655554445888887          899999999753320                       0   


Q ss_pred             ---eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----------cc--CccEEEEEEcCCCCeE
Q 020107           58 ---LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----------IS--SSMCLCLEWNPSATSI  120 (331)
Q Consensus        58 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----------~~--~~~v~~~~~~~~~~~l  120 (331)
                         +..+..+|.+.|+++.|+|.    +..|++++.|.++ +|......           ..  .......-|+|+++.+
T Consensus       256 ~is~eall~GHeDWV~sv~W~p~----~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i  331 (764)
T KOG1063|consen  256 RISFEALLMGHEDWVYSVWWHPE----GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI  331 (764)
T ss_pred             EEehhhhhcCcccceEEEEEccc----hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence               11234589999999999999    8889999999998 88766542           11  3447788999999999


Q ss_pred             EEEecCCeEEEEEccc-cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc---------------
Q 020107          121 TVGLSDGSVSIVSVVE-SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF---------------  184 (331)
Q Consensus       121 ~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------  184 (331)
                      ++-+..|..++|.... ..+.+...+.+|...|.+++|+| .+.+|++.+.|.+-|++-.-..+.               
T Consensus       332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl  410 (764)
T KOG1063|consen  332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL  410 (764)
T ss_pred             EEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccc
Confidence            9999999999999333 33444556779999999999999 788999999888877764320000               


Q ss_pred             -----ee---------------e---------------------------------------------------------
Q 020107          185 -----KL---------------A---------------------------------------------------------  187 (331)
Q Consensus       185 -----~~---------------~---------------------------------------------------------  187 (331)
                           +.               .                                                         
T Consensus       411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e  490 (764)
T KOG1063|consen  411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE  490 (764)
T ss_pred             eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence                 00               0                                                         


Q ss_pred             ---------------------------eecccCCCcceEEEEEecCCCCEEEEEecCC-----eEEEEEecCCCCCceee
Q 020107          188 ---------------------------FQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-----YLRVWDVRSISKPVNET  235 (331)
Q Consensus       188 ---------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~  235 (331)
                                                 ....-+|...|++++.+| +++++|+++...     .|++|+..+..+...  
T Consensus       491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~--  567 (764)
T KOG1063|consen  491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQE--  567 (764)
T ss_pred             cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhhe--
Confidence                                       000114788899999999 999999998653     599999998644432  


Q ss_pred             eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107          236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK--AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                      +..|.-.|+.++|+|++ .+|++.+.|....+|...+..  .......+.|+.-|++++|+|+.         .+++|+|
T Consensus       568 L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde---------~~FaTaS  637 (764)
T KOG1063|consen  568 LEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE---------KYFATAS  637 (764)
T ss_pred             ecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc---------ceeEEec
Confidence            58999999999999998 888899898888888775431  11233367899999999999998         6899999


Q ss_pred             cCCCeEEEEcCCCc
Q 020107          314 FYDRLLRIWMPESD  327 (331)
Q Consensus       314 ~~d~~i~iW~~~~~  327 (331)
                       .|.+|++|...++
T Consensus       638 -RDK~VkVW~~~~~  650 (764)
T KOG1063|consen  638 -RDKKVKVWEEPDL  650 (764)
T ss_pred             -CCceEEEEeccCc
Confidence             9999999998776

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=2.4e-23  Score=171.59  Aligned_cols=265  Identities=13%  Similarity=0.079  Sum_probs=185.3

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE-EEEcCCccE-EEecCCCc
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL-AQADADGGL-LRDITGEK  102 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i-iw~~~~~~  102 (331)
                      +++++++          .++.|++||+.+.+ .+..+ ..+ ..+..++|+|+    ++.+ ++++.++.+ +|+..+.+
T Consensus         2 ~~~~s~~----------~d~~v~~~d~~t~~-~~~~~-~~~-~~~~~l~~~~d----g~~l~~~~~~~~~v~~~d~~~~~   64 (300)
T TIGR03866         2 KAYVSNE----------KDNTISVIDTATLE-VTRTF-PVG-QRPRGITLSKD----GKLLYVCASDSDTIQVIDLATGE   64 (300)
T ss_pred             cEEEEec----------CCCEEEEEECCCCc-eEEEE-ECC-CCCCceEECCC----CCEEEEEECCCCeEEEEECCCCc
Confidence            5677776          79999999998765 33333 433 34678999999    7765 667788888 99988754


Q ss_pred             cc-----CccEEEEEEcCCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC-eEE
Q 020107          103 IS-----SSMCLCLEWNPSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC-KFS  175 (331)
Q Consensus       103 ~~-----~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~  175 (331)
                      ..     ...+..+.|+|+++.++++ ..++.|++||+.+.+.  +..+.. ...+.+++|+| ++.+++++..++ .+.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~  140 (300)
T TIGR03866        65 VIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV--LAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAH  140 (300)
T ss_pred             EEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE--EeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEE
Confidence            31     2335678999999987665 4589999999987643  444442 33467899999 778888877665 567


Q ss_pred             EEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE-EecCCeEEEEEecCCCCCceeeeee----c--CCceEEEEE
Q 020107          176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT-GSYDEYLRVWDVRSISKPVNETSVC----L--GGGVWRIKH  248 (331)
Q Consensus       176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~----~--~~~v~~~~~  248 (331)
                      +||.++++.......    ...+.++.|+| ++.+|++ +..++.|++||+++. +.+..+...    +  ......++|
T Consensus       141 ~~d~~~~~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~  214 (300)
T TIGR03866       141 FIDTKTYEIVDNVLV----DQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKL  214 (300)
T ss_pred             EEeCCCCeEEEEEEc----CCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEE
Confidence            889987765443332    34567899999 8877754 456999999999985 333321111    1  112356889


Q ss_pred             CCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEe-ecCCCeEEEEcCCCc
Q 020107          249 HPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATC-SFYDRLLRIWMPESD  327 (331)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-~~~d~~i~iW~~~~~  327 (331)
                      +|+++..+++.+.++.+.+|++..  ++....+. +...+.+++|+|++         ++|+++ + .++.|++||+.++
T Consensus       215 s~dg~~~~~~~~~~~~i~v~d~~~--~~~~~~~~-~~~~~~~~~~~~~g---------~~l~~~~~-~~~~i~v~d~~~~  281 (300)
T TIGR03866       215 TKDGKTAFVALGPANRVAVVDAKT--YEVLDYLL-VGQRVWQLAFTPDE---------KYLLTTNG-VSNDVSVIDVAAL  281 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCC--CcEEEEEE-eCCCcceEEECCCC---------CEEEEEcC-CCCeEEEEECCCC
Confidence            999744455555667788888754  45544443 34578999999999         466664 5 6999999999987


Q ss_pred             cc
Q 020107          328 CL  329 (331)
Q Consensus       328 ~~  329 (331)
                      ..
T Consensus       282 ~~  283 (300)
T TIGR03866       282 KV  283 (300)
T ss_pred             cE
Confidence            53

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=4.2e-23  Score=166.77  Aligned_cols=274  Identities=13%  Similarity=0.169  Sum_probs=210.4

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eEEeEeee-cCcEeEEEEcCCCCCCCCeEEE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LELLYRMD-TAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      ..+...+|+|..+  +++++.+           .|.+..|++..+... ..-+++.+ ..-|.+++|.++    + -+++
T Consensus       201 e~v~~a~FHPtd~--nliit~G-----------k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en----g-dviT  262 (626)
T KOG2106|consen  201 EVVFLATFHPTDP--NLIITCG-----------KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN----G-DVIT  262 (626)
T ss_pred             ceEEEEEeccCCC--cEEEEeC-----------CceEEEEEccCCceEEEeeccccccceEEEEEEEcCC----C-CEEe
Confidence            3456788999987  7888876           999999999876511 11122223 355999999998    3 5789


Q ss_pred             EcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee--------------------
Q 020107           88 ADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE--------------------  140 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------------------  140 (331)
                      |..+|.+ ||+..+.+      .|++.|.++....+|.+|- |+.|..|..||-.-.+..                    
T Consensus       263 gDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d  341 (626)
T KOG2106|consen  263 GDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD  341 (626)
T ss_pred             ecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCc
Confidence            9999999 99987654      3789999999988887555 999999999983311100                    


Q ss_pred             ------------------eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEE
Q 020107          141 ------------------VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIA  202 (331)
Q Consensus       141 ------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  202 (331)
                                        ......+|......++.+| +.+++++++.|+.+++|+  ..+.+....    -..++.|+.
T Consensus       342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~----~~d~~~~~~  414 (626)
T KOG2106|consen  342 ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKI----IEDPAECAD  414 (626)
T ss_pred             EEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEE----ecCceeEee
Confidence                              0111235777889999999 778999999999999999  333343333    377899999


Q ss_pred             EecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107          203 SIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA  282 (331)
Q Consensus       203 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (331)
                      |+| .+ .++.|...|...+.|.++ ...+..  ...+.+++.++|+|++ .+++.++-|+.+.+|.+.....+....-+
T Consensus       415 fhp-sg-~va~Gt~~G~w~V~d~e~-~~lv~~--~~d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k  488 (626)
T KOG2106|consen  415 FHP-SG-VVAVGTATGRWFVLDTET-QDLVTI--HTDNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGK  488 (626)
T ss_pred             ccC-cc-eEEEeeccceEEEEeccc-ceeEEE--EecCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence            999 77 999999999999999998 344443  3448999999999998 77778888889999999887433333334


Q ss_pred             cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          283 KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       283 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      .|..+|+.++|++|+         ++|.+-+ -|-.|-.|...
T Consensus       489 ~~gs~ithLDwS~Ds---------~~~~~~S-~d~eiLyW~~~  521 (626)
T KOG2106|consen  489 CSGSPITHLDWSSDS---------QFLVSNS-GDYEILYWKPS  521 (626)
T ss_pred             ecCceeEEeeecCCC---------ceEEecc-CceEEEEEccc
Confidence            556899999999999         7999999 99999999543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.1e-23  Score=160.03  Aligned_cols=271  Identities=15%  Similarity=0.229  Sum_probs=184.2

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--eEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--LELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +|.+-|....++++|+.+|+++          .|++|+|||.......  .....+.|.+.|..+.|.+..-  |+.+|+
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCS----------sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf--GqvvA~   78 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCS----------SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF--GQVVAT   78 (361)
T ss_pred             CCcceeeeeeecccCceeeecc----------CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc--cceEEE
Confidence            3434444444455559999998          8999999997654433  4445678999999999976432  899999


Q ss_pred             EcCCccE-EEecCCC--cc-------------cCccEEEEEEcCC--CCeEEEEecCCeEEEEEcccc----ceeeeeee
Q 020107           88 ADADGGL-LRDITGE--KI-------------SSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVES----QLEVLQQW  145 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~--~~-------------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~  145 (331)
                      ++.|+++ ||+-...  +.             ..+.|+++.|.|.  |-.+|+++.||.+|||+.-..    ++....++
T Consensus        79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI  158 (361)
T ss_pred             EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence            9999999 9976322  11             3678999999994  556899999999999997652    12222222


Q ss_pred             e-------cccceeEEEeeCCC--CCcEEEEEcCC-----CeEEEEEccCCC-ceeeeecccCCCcceEEEEEecCCC--
Q 020107          146 K-------AHEFELWATSFDVH--QPHMVYTGSDD-----CKFSGWDIRESP-FKLAFQNSKIHKMGVCCIASIPSDS--  208 (331)
Q Consensus       146 ~-------~~~~~v~~~~~~~~--~~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~--  208 (331)
                      +       .+..+..|+.|+|.  ...+|+.|+.+     +.+.||...... .-......+.|..+|+.|+|.|.-|  
T Consensus       159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~  238 (361)
T KOG2445|consen  159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS  238 (361)
T ss_pred             hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc
Confidence            2       35567889999973  24678888765     478888776543 2222222345999999999999533  


Q ss_pred             -CEEEEEecCCeEEEEEecCCCC----------------Cce--eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107          209 -NTLLTGSYDEYLRVWDVRSISK----------------PVN--ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK  269 (331)
Q Consensus       209 -~~l~~~~~d~~i~iwd~~~~~~----------------~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (331)
                       .+||+++.|| |+||.++....                ++.  ..+..|.+.|+++.|+-.| ..|.++|.|+.+++|+
T Consensus       239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWK  316 (361)
T ss_pred             eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehh
Confidence             5799999999 99999984211                111  1246799999999999985 4555555666666666


Q ss_pred             EcCc-ccceeEEeecCCcceeeeeecC
Q 020107          270 VGGE-KAEVLETYAKHGSLAYGADWQR  295 (331)
Q Consensus       270 ~~~~-~~~~~~~~~~h~~~v~~~~~~~  295 (331)
                      ..-. ..++...+.. .+.++...+++
T Consensus       317 any~n~~kC~sv~~~-e~~~~~~~~~~  342 (361)
T KOG2445|consen  317 ANYNNLWKCTSVLKA-EGSVTKPDFSQ  342 (361)
T ss_pred             hhhhhhheeeeEEec-cCCCCCccccc
Confidence            5322 2344444443 33344444444

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.5e-26  Score=201.67  Aligned_cols=244  Identities=20%  Similarity=0.300  Sum_probs=189.0

Q ss_pred             eEEEEcCCCCCCCC-eEEEEcCCccE-----------EEecCCCcc-----------cCccEEEEEEcCCCCe----EEE
Q 020107           70 FDIKWSPVGGNAGP-FLAQADADGGL-----------LRDITGEKI-----------SSSMCLCLEWNPSATS----ITV  122 (331)
Q Consensus        70 ~~~~~~~~~~~~~~-~l~~~~~dg~i-----------iw~~~~~~~-----------~~~~v~~~~~~~~~~~----l~~  122 (331)
                      ..++|+|.    +. ++++|..-+.+           ||.+.....           .....+.++|.+.+..    |+.
T Consensus        10 a~~awSp~----~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaG   85 (1049)
T KOG0307|consen   10 ATFAWSPA----SPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAG   85 (1049)
T ss_pred             ceEEecCC----CchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeec
Confidence            35689998    43 66666544433           554432211           2466789999997766    888


Q ss_pred             EecCCeEEEEEccc----cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcce
Q 020107          123 GLSDGSVSIVSVVE----SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV  198 (331)
Q Consensus       123 ~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  198 (331)
                      |.+||.|.+||...    .+...+.....|.+.|..+.|++..++++++|+.||.|.|||+.+.+....... ....+.|
T Consensus        86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~-~~~~~eI  164 (1049)
T KOG0307|consen   86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS-QAPPSEI  164 (1049)
T ss_pred             cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC-CCCcccc
Confidence            88899999999875    233445667789999999999998888999999999999999998654444322 3357789


Q ss_pred             EEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC--CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--
Q 020107          199 CCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG--GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK--  274 (331)
Q Consensus       199 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  274 (331)
                      .+++|+.....+|++++.+|.+.|||+|.. +++.. +..+.  ..+..++|+|+....+++++.+++.-++.+|+.+  
T Consensus       165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~-ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a  242 (1049)
T KOG0307|consen  165 KCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIK-LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA  242 (1049)
T ss_pred             eEeccchhhhHHhhccCCCCCceeccccCC-Ccccc-cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence            999999877889999999999999999985 55444 23333  3478899999988888888888876555555522  


Q ss_pred             cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          275 AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       275 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ...++++.+|...|.+++|++.++        ++|+|++ .|+.|.+|+.++++.
T Consensus       243 ssP~k~~~~H~~GilslsWc~~D~--------~lllSsg-kD~~ii~wN~~tgEv  288 (1049)
T KOG0307|consen  243 SSPLKILEGHQRGILSLSWCPQDP--------RLLLSSG-KDNRIICWNPNTGEV  288 (1049)
T ss_pred             CCchhhhcccccceeeeccCCCCc--------hhhhccc-CCCCeeEecCCCceE
Confidence            567788899999999999999987        8999999 999999999999753

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.3e-24  Score=172.29  Aligned_cols=250  Identities=14%  Similarity=0.184  Sum_probs=203.9

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI  103 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~  103 (331)
                      ++++++..         ....+.+|.+.......  ....-.++|.+++-+|.    +.+|+.|+..|.+ +|.+.++..
T Consensus        51 ~yllsaq~---------~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~----G~~l~ag~i~g~lYlWelssG~L  115 (476)
T KOG0646|consen   51 EYLLSAQL---------KRPLLHVWEILKKDQVV--QYIVLPGPVHALASSNL----GYFLLAGTISGNLYLWELSSGIL  115 (476)
T ss_pred             hheeeecc---------cCccccccccCchhhhh--hhcccccceeeeecCCC----ceEEEeecccCcEEEEEeccccH
Confidence            46677663         56789999988765222  12234578999999999    8999999999999 999999876


Q ss_pred             ------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-------cceeeeeeeecccceeEEEeeCCC-CCcEEEEEc
Q 020107          104 ------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-------SQLEVLQQWKAHEFELWATSFDVH-QPHMVYTGS  169 (331)
Q Consensus       104 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~  169 (331)
                            |-..|+|+.|+-|+.+|++|+.||.|.+|.+..       ....++..+..|.-+|+++...+. ....+++++
T Consensus       116 L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS  195 (476)
T KOG0646|consen  116 LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS  195 (476)
T ss_pred             HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence                  789999999999999999999999999998754       345678889999999999998863 346899999


Q ss_pred             CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC--------------Cceee
Q 020107          170 DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK--------------PVNET  235 (331)
Q Consensus       170 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~  235 (331)
                      .|.++++||+..+..+..+..    ...+.+++.+| .+..++.|+.+|.|.+.++.....              .....
T Consensus       196 ~D~t~k~wdlS~g~LLlti~f----p~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~  270 (476)
T KOG0646|consen  196 EDRTIKLWDLSLGVLLLTITF----PSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV  270 (476)
T ss_pred             CCceEEEEEeccceeeEEEec----CCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeee
Confidence            999999999999987777765    78899999999 999999999999999998865420              01112


Q ss_pred             eeecCC--ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107          236 SVCLGG--GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       236 ~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                      +.+|.+  +|+|++.+-|+ .++++++.++.+.+|++...  ++++++....++|+.+.+.|-.
T Consensus       271 ~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~--Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  271 LVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSK--QCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             eccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchH--HHHHHHhhhccccceeEeeccc
Confidence            456777  99999999997 77777778888999999884  7777776567889999886654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=7.2e-25  Score=165.72  Aligned_cols=211  Identities=18%  Similarity=0.235  Sum_probs=167.7

Q ss_pred             ccCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccc----------eee---eeeeecccceeEEEeeCCCCCcEEEEE
Q 020107          103 ISSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQ----------LEV---LQQWKAHEFELWATSFDVHQPHMVYTG  168 (331)
Q Consensus       103 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~----------~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~  168 (331)
                      .|.+.|+++...+ .|+++++|+.||.|.+||++...          ..+   ...-.+|...|.++.|-|.+..++.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            4566777777766 46777888888888888876521          001   111246888999999999999999999


Q ss_pred             cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC--CCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEE
Q 020107          169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD--SNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRI  246 (331)
Q Consensus       169 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  246 (331)
                      +.|.++++||..+.+....|..    .+.|++-+++|..  ..++|+|..|-.|++.|+.++.. ... +.+|...|.++
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~m----e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~-LsGHr~~vlaV  194 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFKM----EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHT-LSGHRDGVLAV  194 (397)
T ss_pred             cccceEEEeecccceeeEEeec----CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eee-eccccCceEEE
Confidence            9999999999999887777775    7789999998842  46788899999999999999643 333 58999999999


Q ss_pred             EECCCCCCeEEEEEecCcEEEEEEcCcc-------------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107          247 KHHPFIPGLVLAACMHNGFAVVKVGGEK-------------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                      .|+|..+..+++++.|+.+++|+++...             ...+++-..|.+.|.+++|..++         .++++++
T Consensus       195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~---------~~l~~~g  265 (397)
T KOG4283|consen  195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA---------RYLASCG  265 (397)
T ss_pred             EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc---------hhhhhcc
Confidence            9999986777777889999999998753             11222334678899999999999         7999999


Q ss_pred             cCCCeEEEEcCCCccc
Q 020107          314 FYDRLLRIWMPESDCL  329 (331)
Q Consensus       314 ~~d~~i~iW~~~~~~~  329 (331)
                       .|..+++|+.++|..
T Consensus       266 -td~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  266 -TDDRIRVWNMESGRN  280 (397)
T ss_pred             -CccceEEeecccCcc
Confidence             999999999988753

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=1.4e-22  Score=163.84  Aligned_cols=271  Identities=15%  Similarity=0.152  Sum_probs=206.0

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      .++.||.|.+.+    -+++|.          .+|.|.||+..... ..+... .|.+.|.+++...+    +.+|- |+
T Consensus       247 k~Vl~v~F~eng----dviTgD----------S~G~i~Iw~~~~~~-~~k~~~-aH~ggv~~L~~lr~----GtllS-Gg  305 (626)
T KOG2106|consen  247 KFVLCVTFLENG----DVITGD----------SGGNILIWSKGTNR-ISKQVH-AHDGGVFSLCMLRD----GTLLS-GG  305 (626)
T ss_pred             eEEEEEEEcCCC----CEEeec----------CCceEEEEeCCCce-EEeEee-ecCCceEEEEEecC----ccEee-cC
Confidence            356777777765    356665          79999999997765 334443 89999999999988    65555 99


Q ss_pred             CCccE-EEecCCCcc----------------------------------------------cCccEEEEEEcCCCCeEEE
Q 020107           90 ADGGL-LRDITGEKI----------------------------------------------SSSMCLCLEWNPSATSITV  122 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~----------------------------------------------~~~~v~~~~~~~~~~~l~~  122 (331)
                      .|..+ .|+-.-.+.                                              |......++.+|+.+.+++
T Consensus       306 KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T  385 (626)
T KOG2106|consen  306 KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLT  385 (626)
T ss_pred             ccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheee
Confidence            99999 887321100                                              3445678889999999999


Q ss_pred             EecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEE
Q 020107          123 GLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIA  202 (331)
Q Consensus       123 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  202 (331)
                      ++.|+.+++|+  ..++  +-... -..++.++.|+| .+ .++.|...|...+.|.++...+..-.    ...+++++.
T Consensus       386 ~gqdk~v~lW~--~~k~--~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~----d~~~ls~v~  454 (626)
T KOG2106|consen  386 CGQDKHVRLWN--DHKL--EWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHT----DNEQLSVVR  454 (626)
T ss_pred             ccCcceEEEcc--CCce--eEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEe----cCCceEEEE
Confidence            99999999999  3333  22222 355789999999 65 99999999999999999855333332    378999999


Q ss_pred             EecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--------
Q 020107          203 SIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK--------  274 (331)
Q Consensus       203 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  274 (331)
                      |+| ++.+||.|+.|+.|.+|-+....+........+..+|+.+.|++|+ +++.+.+.+-.+..|......        
T Consensus       455 ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds-~~~~~~S~d~eiLyW~~~~~~~~ts~kDv  532 (626)
T KOG2106|consen  455 YSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS-QFLVSNSGDYEILYWKPSECKQITSVKDV  532 (626)
T ss_pred             EcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC-ceEEeccCceEEEEEccccCcccceecce
Confidence            999 9999999999999999999887777766556677899999999997 566666555555555221100        


Q ss_pred             -----------------------------------------------------cceeEEeecCCcceeeeeecCCCCccc
Q 020107          275 -----------------------------------------------------AEVLETYAKHGSLAYGADWQRGRSSLE  301 (331)
Q Consensus       275 -----------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~  301 (331)
                                                                           ......+.+|.+.|++++|.-..    
T Consensus       533 kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d----  608 (626)
T KOG2106|consen  533 KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKD----  608 (626)
T ss_pred             eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCC----
Confidence                                                                 12234456899999999999988    


Q ss_pred             ccccCcEEEEeecCCCeEEEEcC
Q 020107          302 GKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       302 ~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                           ..+++.+ .|..|..|++
T Consensus       609 -----~~li~tg-~D~Si~qW~l  625 (626)
T KOG2106|consen  609 -----SHLISTG-KDTSIMQWRL  625 (626)
T ss_pred             -----ceEEecC-CCceEEEEEe
Confidence                 6888888 8999999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.4e-23  Score=179.11  Aligned_cols=237  Identities=17%  Similarity=0.238  Sum_probs=192.6

Q ss_pred             eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC-cc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEc
Q 020107           63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE-KI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSV  134 (331)
Q Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~-~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  134 (331)
                      ..|+.+-+.|+|.|+    +.+|++++.||.+ +|+.... +.      +...|.+++.  .+..|++|+.+++|.+|..
T Consensus        10 yaht~G~t~i~~d~~----gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPD----GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hhccCceEEEEEcCC----CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeC
Confidence            468899999999999    8999999999999 8876554 21      3455666654  5569999999999999999


Q ss_pred             cccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107          135 VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      ..+...  ..+..-.-++++++++- ++++++.|+.|-.|++.++........+..   |.++|.++.|+| .+++||+.
T Consensus        84 ps~~~~--~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrg---h~apVl~l~~~p-~~~fLAvs  156 (933)
T KOG1274|consen   84 PSGEED--TILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRG---HDAPVLQLSYDP-KGNFLAVS  156 (933)
T ss_pred             CCCCcc--ceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecc---cCCceeeeeEcC-CCCEEEEE
Confidence            887543  22333456799999995 899999999999999999998887777777   999999999999 99999999


Q ss_pred             ecCCeEEEEEecCCCCCceee-------eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee--cCC
Q 020107          215 SYDEYLRVWDVRSISKPVNET-------SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA--KHG  285 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~  285 (331)
                      +-||.|++||+.++. ....+       .......+..++|+|++ +.+++.+.++.+++++...  .+....++  .+.
T Consensus       157 s~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~--we~~f~Lr~~~~s  232 (933)
T KOG1274|consen  157 SCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKG--WELQFKLRDKLSS  232 (933)
T ss_pred             ecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCC--ceeheeecccccc
Confidence            999999999999752 22110       01224567889999998 8888889999988888766  45555555  345


Q ss_pred             cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          286 SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       286 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ..+..+.|+|.|         .|||+++ .||.|-|||+++
T Consensus       233 s~~~~~~wsPnG---------~YiAAs~-~~g~I~vWnv~t  263 (933)
T KOG1274|consen  233 SKFSDLQWSPNG---------KYIAAST-LDGQILVWNVDT  263 (933)
T ss_pred             cceEEEEEcCCC---------cEEeeec-cCCcEEEEeccc
Confidence            559999999999         7999999 999999999985

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.7e-23  Score=178.02  Aligned_cols=260  Identities=13%  Similarity=0.175  Sum_probs=202.4

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +...-..|.|-|.+   ++|.+++          .||.|++|+..........+. .+...|.+++-...      .|++
T Consensus        12 ht~G~t~i~~d~~g---efi~tcg----------sdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~s~------~f~~   71 (933)
T KOG1274|consen   12 HTGGLTLICYDPDG---EFICTCG----------SDGDIRKWKTNSDEEEPETID-ISGELVSSIACYSN------HFLT   71 (933)
T ss_pred             ccCceEEEEEcCCC---CEEEEec----------CCCceEEeecCCcccCCchhh-ccCceeEEEeeccc------ceEE
Confidence            34445677777776   6666665          699999999876632344442 26677888776544      9999


Q ss_pred             EcCCccE-EEecCCCccc------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           88 ADADGGL-LRDITGEKIS------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      ++.++.+ .+.....+.+      .-++.+++|+.+|++++.|+.|-.|++.+..+...  .+.+++|..+|.++.|+| 
T Consensus        72 ~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~--~~~lrgh~apVl~l~~~p-  148 (933)
T KOG1274|consen   72 GSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ--EKVLRGHDAPVLQLSYDP-  148 (933)
T ss_pred             eeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch--heeecccCCceeeeeEcC-
Confidence            9999999 8888776654      56788999999999999999999999999988754  778899999999999999 


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeeeecccC-----CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI-----HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  235 (331)
                      ++++|++.+.||.|++||+.++.....+.....     ....+..++|+| ++..|+..+.|+.|++|+...........
T Consensus       149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr  227 (933)
T KOG1274|consen  149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLR  227 (933)
T ss_pred             CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeec
Confidence            889999999999999999998877655544221     145578899999 77777777889999999999874433332


Q ss_pred             eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107          236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  298 (331)
                      ...+...+..++|+|.| .++++++.++.|.+|++...  .   + ......|++++|.|+.+
T Consensus       228 ~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~--~---~-~~~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  228 DKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTH--E---R-HEFKRAVCCEAWKPNAN  283 (933)
T ss_pred             ccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccc--h---h-ccccceeEEEecCCCCC
Confidence            23344559999999997 78888889999999998762  1   1 23356899999999874

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.8e-25  Score=187.43  Aligned_cols=231  Identities=17%  Similarity=0.255  Sum_probs=192.9

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC------CcccCccEEEEEEc
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG------EKISSSMCLCLEWN  114 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~------~~~~~~~v~~~~~~  114 (331)
                      ..-.+++|+....        ..|...|.++..-..    .+.+++|+.|-.+ +|.+..      ...|..+|.++.|+
T Consensus        12 ~~t~Lr~~~~~~~--------~~hsaav~~lk~~~s----~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~   79 (825)
T KOG0267|consen   12 RATKLRVWDTREF--------VAHSAAVGCLKIRKS----SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD   79 (825)
T ss_pred             eeeccccccchhh--------hhhhhhhceeeeecc----ceeeccCCCceeeccccccCCchhheeeccCCcceeeecC
Confidence            4556777775543        357778888887555    7899999999998 777654      35589999999999


Q ss_pred             CCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC
Q 020107          115 PSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH  194 (331)
Q Consensus       115 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  194 (331)
                      +...+|++|+.+|+|++||++..+.  ++++.+|...+.++.|+| -+.++++|+.|+.+++||++...+...+..   |
T Consensus        80 ~~E~LlaagsasgtiK~wDleeAk~--vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s---~  153 (825)
T KOG0267|consen   80 TSERLLAAGSASGTIKVWDLEEAKI--VRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKS---H  153 (825)
T ss_pred             cchhhhcccccCCceeeeehhhhhh--hhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecC---C
Confidence            9999999999999999999998765  789999999999999999 778889999999999999998777888876   9


Q ss_pred             CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCc
Q 020107          195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGE  273 (331)
Q Consensus       195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  273 (331)
                      ...+..+.|+| +|.+++.+++|..+++||+..+ +.+.+ +..|.+.+..+.|+|.  ..+++.| .+..+++|++.. 
T Consensus       154 ~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~ag-k~~~e-f~~~e~~v~sle~hp~--e~Lla~Gs~d~tv~f~dlet-  227 (825)
T KOG0267|consen  154 TRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAG-KLSKE-FKSHEGKVQSLEFHPL--EVLLAPGSSDRTVRFWDLET-  227 (825)
T ss_pred             cceeEEEeecC-CCceeeccCCcceeeeeccccc-ccccc-cccccccccccccCch--hhhhccCCCCceeeeeccce-
Confidence            99999999999 9999999999999999999885 44444 5779999999999998  5555555 555566666654 


Q ss_pred             ccceeEEeecCCcceeeeeecCCC
Q 020107          274 KAEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       274 ~~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                       .+.+...+.....|.+.+|+|++
T Consensus       228 -fe~I~s~~~~~~~v~~~~fn~~~  250 (825)
T KOG0267|consen  228 -FEVISSGKPETDGVRSLAFNPDG  250 (825)
T ss_pred             -eEEeeccCCccCCceeeeecCCc
Confidence             46666666677899999999998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.2e-25  Score=188.38  Aligned_cols=222  Identities=19%  Similarity=0.281  Sum_probs=187.1

Q ss_pred             eEEEEcCCccE-EEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           84 FLAQADADGGL-LRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      +++.....-.+ +|+.+....|...+.++..-..++.+++|+.|..+-+|.+...  .++..+.+|+.+|.++.|++ ..
T Consensus         6 ~~m~~~~~t~Lr~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~-~E   82 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDT-SE   82 (825)
T ss_pred             ccceeeeeeccccccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCc-ch
Confidence            33334334444 8888888889899999988778889999999999999998754  45777899999999999998 88


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG  242 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  242 (331)
                      .+|++|+.+|+|++||+...+....+..   |...+.++.|+| -+.+++.|+.|+.+++||++.. .+... ...|...
T Consensus        83 ~LlaagsasgtiK~wDleeAk~vrtLtg---h~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~-Gc~~~-~~s~~~v  156 (825)
T KOG0267|consen   83 RLLAAGSASGTIKVWDLEEAKIVRTLTG---HLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKK-GCSHT-YKSHTRV  156 (825)
T ss_pred             hhhcccccCCceeeeehhhhhhhhhhhc---cccCcceeeecc-ceEEeccccccccceehhhhcc-Cceee-ecCCcce
Confidence            9999999999999999999887777777   999999999999 8899999999999999999974 44444 3669999


Q ss_pred             eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107          243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW  322 (331)
                      +..++|+|+| ..+..++.+..+++|+...  ++....|..|.+.+..+.|+|..         -++++|| .|++|++|
T Consensus       157 v~~l~lsP~G-r~v~~g~ed~tvki~d~~a--gk~~~ef~~~e~~v~sle~hp~e---------~Lla~Gs-~d~tv~f~  223 (825)
T KOG0267|consen  157 VDVLRLSPDG-RWVASGGEDNTVKIWDLTA--GKLSKEFKSHEGKVQSLEFHPLE---------VLLAPGS-SDRTVRFW  223 (825)
T ss_pred             eEEEeecCCC-ceeeccCCcceeeeecccc--cccccccccccccccccccCchh---------hhhccCC-CCceeeee
Confidence            9999999994 3444444557677777766  68899999999999999999997         6899999 99999999


Q ss_pred             cCCCc
Q 020107          323 MPESD  327 (331)
Q Consensus       323 ~~~~~  327 (331)
                      |+++-
T Consensus       224 dletf  228 (825)
T KOG0267|consen  224 DLETF  228 (825)
T ss_pred             cccee
Confidence            99854

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=4.3e-23  Score=166.50  Aligned_cols=260  Identities=11%  Similarity=0.172  Sum_probs=200.9

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD   91 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   91 (331)
                      +.++.|....    +|++++.        ..|..+++|.-......+..+.+.....-.|++....    ..++++|+..
T Consensus        37 ~~s~~w~~~n----~lvvas~--------~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~----S~y~~sgG~~  100 (673)
T KOG4378|consen   37 DFSFNWQRRN----FLVVASM--------AGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ----SLYEISGGQS  100 (673)
T ss_pred             ceeeeccccc----eEEEeec--------CCceeEEEecccCCCCccceeeccccchHHHHhhhhc----ceeeeccCcC
Confidence            5566666553    4666652        2688899998665521222222222223344444444    5589999999


Q ss_pred             ccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc-cceeEEEeeCCCCCc
Q 020107           92 GGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH-EFELWATSFDVHQPH  163 (331)
Q Consensus        92 g~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  163 (331)
                      +.+ |||+....+      |.+.|+++.++-...+||+++..|.|.|..+.++..  ...|... ...|.-+.|+|....
T Consensus       101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~--tt~f~~~sgqsvRll~ys~skr~  178 (673)
T KOG4378|consen  101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK--TTTFTIDSGQSVRLLRYSPSKRF  178 (673)
T ss_pred             ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--ccceecCCCCeEEEeecccccce
Confidence            999 999986443      678999999999999999999999999999988754  3444422 455778999998888


Q ss_pred             EEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCce
Q 020107          164 MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV  243 (331)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  243 (331)
                      +|.+++.+|.|.+||.........+.  ..|..+...|+|+|.++.+|++.+.|..|.+||++.. +....  .....+.
T Consensus       179 lL~~asd~G~VtlwDv~g~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~--l~y~~Pl  253 (673)
T KOG4378|consen  179 LLSIASDKGAVTLWDVQGMSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDR--LTYSHPL  253 (673)
T ss_pred             eeEeeccCCeEEEEeccCCCcccchh--hhccCCcCcceecCCccceEEEecccceEEEeecccc-cccce--eeecCCc
Confidence            99999999999999998765544443  4599999999999988999999999999999999973 44444  5677889


Q ss_pred             EEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107          244 WRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRG  296 (331)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  296 (331)
                      ..++|.++| .+|+++.+.+.+..|+++.. ..++.+...|...|++++|.|.
T Consensus       254 stvaf~~~G-~~L~aG~s~G~~i~YD~R~~-k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  254 STVAFSECG-TYLCAGNSKGELIAYDMRST-KAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             ceeeecCCc-eEEEeecCCceEEEEecccC-CCCceEeeecccceeEEEeeec
Confidence            999999996 66666667888889999887 7888899999999999999987

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=2.9e-23  Score=173.51  Aligned_cols=233  Identities=19%  Similarity=0.282  Sum_probs=191.3

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------cCccEEE-EEEcC-CCCeEEEEecC
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------SSSMCLC-LEWNP-SATSITVGLSD  126 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~-~~~~~-~~~~l~~~~~d  126 (331)
                      +.....+|...|..++..+.     ..+++++.||++ +|.-...+.        +.+-|.. +++.+ ++-.+++|+.|
T Consensus         6 ls~~l~gH~~DVr~v~~~~~-----~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D   80 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDG-----VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD   80 (745)
T ss_pred             eEEEeccCccchheeEecCC-----eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc
Confidence            55667899999999987766     379999999999 998755443        3344444 67765 44459999999


Q ss_pred             CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS  206 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  206 (331)
                      ++|.+|.+.+.  .++..+++|+..|.+++... ++. +++|+-|.++++|-+..  +...++.   |+..|.++..-| 
T Consensus        81 ~~i~v~~~~~~--~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~--l~~~l~g---H~asVWAv~~l~-  150 (745)
T KOG0301|consen   81 TTIIVFKLSQA--EPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGE--LVYSLQG---HTASVWAVASLP-  150 (745)
T ss_pred             ceEEEEecCCC--CchhhhhccccceeeeecCC-cCc-eEecccccceEEecchh--hhcccCC---cchheeeeeecC-
Confidence            99999999876  55899999999999999764 444 99999999999998764  3444554   999999999998 


Q ss_pred             CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc
Q 020107          207 DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS  286 (331)
Q Consensus       207 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  286 (331)
                      .. .++||+.|.+|++|.-.   +.+.. +.+|...|..+++-++  .-+++++.|+.|+.|++.   ++.+.++.+|+.
T Consensus       151 e~-~~vTgsaDKtIklWk~~---~~l~t-f~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~~---ge~l~~~~ghtn  220 (745)
T KOG0301|consen  151 EN-TYVTGSADKTIKLWKGG---TLLKT-FSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDLD---GEVLLEMHGHTN  220 (745)
T ss_pred             CC-cEEeccCcceeeeccCC---chhhh-hccchhheeeeEEecC--CCeEeecCCceEEEEecc---Cceeeeeeccce
Confidence            44 89999999999999764   33443 5789999999999998  678888888888888773   688999999999


Q ss_pred             ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      -|++++...++         +.++|+| +|++++||+..
T Consensus       221 ~vYsis~~~~~---------~~Ivs~g-EDrtlriW~~~  249 (745)
T KOG0301|consen  221 FVYSISMALSD---------GLIVSTG-EDRTLRIWKKD  249 (745)
T ss_pred             EEEEEEecCCC---------CeEEEec-CCceEEEeecC
Confidence            99999966666         6999999 99999999976

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=2.2e-23  Score=168.18  Aligned_cols=261  Identities=14%  Similarity=0.175  Sum_probs=201.7

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC--CccE-EEecCCCc--c------cCccEEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA--DGGL-LRDITGEK--I------SSSMCLCL  111 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--dg~i-iw~~~~~~--~------~~~~v~~~  111 (331)
                      ...+++||+...+........-....+.++.|+..+     .|++++.  |..+ +|.-....  .      ....-.|+
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n-----~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv   85 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN-----FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV   85 (673)
T ss_pred             CCceEEeecccccCccccccCCCCCcceeeeccccc-----eEEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence            668999999876532222211123349999999873     3555544  4444 77654431  1      12233455


Q ss_pred             EEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc
Q 020107          112 EWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS  191 (331)
Q Consensus       112 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  191 (331)
                      +......++++|+..+.|+|||++..  ...+.+++|...|+++.++- ...+|++++..|.|.|..+.++.....|.. 
T Consensus        86 ~~~s~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~-  161 (673)
T KOG4378|consen   86 ACASQSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTI-  161 (673)
T ss_pred             hhhhcceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceec-
Confidence            55556689999999999999999954  34677899999999999995 779999999999999999999887777765 


Q ss_pred             cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107          192 KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG  271 (331)
Q Consensus       192 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (331)
                       +....|+-+.|+|....+|.+++.+|.|.+||.... .|.......|..+...|+|+|..+.++++.|.|..|.+|++.
T Consensus       162 -~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  162 -DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             -CCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence             134567799999977778889999999999999885 677776789999999999999998899999999999999998


Q ss_pred             CcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          272 GEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       272 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ..  +....+.. ..+.+.++|.++|         .+|+.|. ..|.|..||+...
T Consensus       240 s~--~s~~~l~y-~~Plstvaf~~~G---------~~L~aG~-s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  240 SQ--ASTDRLTY-SHPLSTVAFSECG---------TYLCAGN-SKGELIAYDMRST  282 (673)
T ss_pred             cc--cccceeee-cCCcceeeecCCc---------eEEEeec-CCceEEEEecccC
Confidence            64  33444432 4578899999999         6999998 8999999998654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2e-22  Score=168.08  Aligned_cols=240  Identities=14%  Similarity=0.159  Sum_probs=196.0

Q ss_pred             eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEc
Q 020107           64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSV  134 (331)
Q Consensus        64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  134 (331)
                      ....+|.+|+|+..    ...||.+-.+|.+ +|++...-.        ....|.+++|+ ++..|++.+.+|.|.-||+
T Consensus        23 ~~Ps~I~slA~s~k----S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHK----SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL   97 (691)
T ss_pred             eeccceEEEEEecc----CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence            34578999999999    8899999999999 999987432        36789999999 5567889999999999999


Q ss_pred             cccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107          135 VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      .+.+.  ...+....+.|++++.+| .+..++.|++||.+..++...++....... .-.++.|.+++|+| ++..+++|
T Consensus        98 ~~lk~--~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l-~rq~sRvLslsw~~-~~~~i~~G  172 (691)
T KOG2048|consen   98 HTLKQ--KYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSL-MRQKSRVLSLSWNP-TGTKIAGG  172 (691)
T ss_pred             ccCce--eEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeec-ccccceEEEEEecC-CccEEEec
Confidence            98754  677777888999999999 778999999999888888776654333322 22578999999999 99999999


Q ss_pred             ecCCeEEEEEecCCCCCceee------eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce
Q 020107          215 SYDEYLRVWDVRSISKPVNET------SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA  288 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  288 (331)
                      +.||.|++||...+.......      ...-..-|+++.|-.+  +.++++-+.+.+.+|+-..  +.+++.+..|...|
T Consensus       173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~--gTLiqS~~~h~adV  248 (691)
T KOG2048|consen  173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIF--GTLIQSHSCHDADV  248 (691)
T ss_pred             ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccC--cchhhhhhhhhcce
Confidence            999999999999864333110      0112335889999877  7888888889888888776  68899999999999


Q ss_pred             eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .+++..+++         .+++++| .|+.|..+...++
T Consensus       249 l~Lav~~~~---------d~vfsaG-vd~~ii~~~~~~~  277 (691)
T KOG2048|consen  249 LALAVADNE---------DRVFSAG-VDPKIIQYSLTTN  277 (691)
T ss_pred             eEEEEcCCC---------CeEEEcc-CCCceEEEEecCC
Confidence            999999998         6899999 9999998887665

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=2.4e-22  Score=153.97  Aligned_cols=270  Identities=16%  Similarity=0.201  Sum_probs=199.8

Q ss_pred             eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--------c--eEEeEee-ecCcEeEEEEcC----CC
Q 020107           14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--------N--LELLYRM-DTAGIFDIKWSP----VG   78 (331)
Q Consensus        14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--------~--~~~~~~~-~~~~v~~~~~~~----~~   78 (331)
                      ...|+|++   ..|.+-+          .|..+.+|++.....        .  .....+. ....|..-+|-+    +.
T Consensus        54 gckWSPDG---SciL~~s----------edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~q  120 (406)
T KOG2919|consen   54 GCKWSPDG---SCILSLS----------EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQ  120 (406)
T ss_pred             cceeCCCC---ceEEeec----------ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCC
Confidence            34455554   7777776          799999999864210        0  1111111 234478888763    22


Q ss_pred             CCCCCeEEEEcCCccE-EEecCCCccc-----------CccEEEEEEcCCCCeEEEEecCCeEEEEEc-cccceeeeeee
Q 020107           79 GNAGPFLAQADADGGL-LRDITGEKIS-----------SSMCLCLEWNPSATSITVGLSDGSVSIVSV-VESQLEVLQQW  145 (331)
Q Consensus        79 ~~~~~~l~~~~~dg~i-iw~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~  145 (331)
                      |. ..++++.+.+.-| +|+.-+++..           -....+++|+|||..|++|.. ..|+++|+ +.++..++...
T Consensus       121 P~-t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  121 PS-TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             Cc-cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhh
Confidence            32 6789999999999 9999887752           234568999999999998765 89999999 44543333332


Q ss_pred             e-----cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCe
Q 020107          146 K-----AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEY  219 (331)
Q Consensus       146 ~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~  219 (331)
                      .     +..+.+.+++|+|.+...++.++....+-||.-........+-.   |.+.|+.+.|++ +++.|.+|+ .|..
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg---h~gGvThL~~~e-dGn~lfsGaRk~dk  274 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG---HGGGVTHLQWCE-DGNKLFSGARKDDK  274 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc---cCCCeeeEEecc-CcCeecccccCCCe
Confidence            2     23678999999998888999999999998988877776666665   999999999999 999999988 4778


Q ss_pred             EEEEEecCCCCCceeeeeecCC-ceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107          220 LRVWDVRSISKPVNETSVCLGG-GVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                      |..||+|....++.. +..|.+ .-..|.|.-+..+.++++| .++.+++|++.+. +..+..+..|...+..++++|.-
T Consensus       275 Il~WDiR~~~~pv~~-L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~-gn~~sv~~~~sd~vNgvslnP~m  352 (406)
T KOG2919|consen  275 ILCWDIRYSRDPVYA-LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL-GNEVSVTGNYSDTVNGVSLNPIM  352 (406)
T ss_pred             EEEEeehhccchhhh-hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC-CCcccccccccccccceecCccc
Confidence            999999998777776 455555 4456666644445666666 7788889998876 56677788899999999999997


Q ss_pred             CcccccccCcEEEEee
Q 020107          298 SSLEGKRKNSLVATCS  313 (331)
Q Consensus       298 ~~~~~~~~~~~l~s~~  313 (331)
                               .++|+++
T Consensus       353 ---------pilatss  359 (406)
T KOG2919|consen  353 ---------PILATSS  359 (406)
T ss_pred             ---------ceeeecc
Confidence                     4888876

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.3e-23  Score=161.61  Aligned_cols=291  Identities=13%  Similarity=0.126  Sum_probs=217.1

Q ss_pred             eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCc-----ccceEEeEeeecCcEeEEEEcCCCCC
Q 020107            6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAE-----EKNLELLYRMDTAGIFDIKWSPVGGN   80 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (331)
                      ..+.+|..||....++..+++||+|+          .|-.+++|+++..     .+++...-..|...|.+++|...   
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGG----------DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~---  116 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGG----------DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE---  116 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecC----------CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC---
Confidence            33444555554444444459999998          8999999998642     12455554556788999999998   


Q ss_pred             CCCeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee-eeeeeecccc
Q 020107           81 AGPFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE-VLQQWKAHEF  150 (331)
Q Consensus        81 ~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~  150 (331)
                       .+++.+|..++++ +-++.+.+.        ..+.|+.+..+|..+.|++.+.++.|.+||.+..... ....+.....
T Consensus       117 -N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~  195 (609)
T KOG4227|consen  117 -NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK  195 (609)
T ss_pred             -CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence             8899999999999 677766543        3568999999999999999999999999999875411 1111222345


Q ss_pred             eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce-eeeecc---cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107          151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK-LAFQNS---KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR  226 (331)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~  226 (331)
                      ....+.|+|..+.+|++.+..+-+-+||++..... ......   +.....-.++.|+| +++.|++--....-.+||+-
T Consensus       196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~  274 (609)
T KOG4227|consen  196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFI  274 (609)
T ss_pred             cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeee
Confidence            67899999988999999999999999999976531 111111   11122346788999 99999888777778899998


Q ss_pred             CCCCCceeeeeecC-------CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc---------------------ccee
Q 020107          227 SISKPVNETSVCLG-------GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK---------------------AEVL  278 (331)
Q Consensus       227 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~  278 (331)
                      +...++..  ..|.       ..+.+++|-.+  ..+++++.+-++++|++....                     ...+
T Consensus       275 S~R~~V~k--~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~  350 (609)
T KOG4227|consen  275 SQRCFVLK--SDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKEL  350 (609)
T ss_pred             cccceeEe--ccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheeccee
Confidence            86555555  3433       25778888887  567777777789999986532                     2345


Q ss_pred             EEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          279 ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       279 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      ..+++|...+..+.|+|..         .+|++.| ....++||..-
T Consensus       351 ~VLrGHRSv~NQVRF~~H~---------~~l~SSG-VE~~~KlWS~~  387 (609)
T KOG4227|consen  351 TVLRGHRSVPNQVRFSQHN---------NLLVSSG-VENSFKLWSDH  387 (609)
T ss_pred             EEEecccccccceeecCCc---------ceEeccc-hhhheeccccc
Confidence            6688999999999999998         6999999 99999999864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.92  E-value=4.8e-23  Score=155.56  Aligned_cols=245  Identities=16%  Similarity=0.201  Sum_probs=183.2

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCc----cE-EEecC--CCc-------ccCccEEEEEEcCCCC-----eEEEEecCC
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADG----GL-LRDIT--GEK-------ISSSMCLCLEWNPSAT-----SITVGLSDG  127 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg----~i-iw~~~--~~~-------~~~~~v~~~~~~~~~~-----~l~~~~~dg  127 (331)
                      -.++++.|+..... ..+||.|+..-    .+ +-.+.  +.+       .|.-+++.+.|.|+..     +||+.  +.
T Consensus        45 ~~lya~~Ws~~~~~-~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D  121 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDK-KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SD  121 (364)
T ss_pred             CceeeeccccCCCc-ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cC
Confidence            45899999954222 56888887533    33 22221  111       2577889999999763     34443  34


Q ss_pred             eEEEEEccc--cceeeeeee-----ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc---eeeeecccCCCcc
Q 020107          128 SVSIVSVVE--SQLEVLQQW-----KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF---KLAFQNSKIHKMG  197 (331)
Q Consensus       128 ~i~i~d~~~--~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~  197 (331)
                      .+|+|.+..  .+..+...+     ..+..++++..|+..+++++.+++-|-+..|||+.++..   ...+..   |...
T Consensus       122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA---HDKE  198 (364)
T KOG0290|consen  122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA---HDKE  198 (364)
T ss_pred             eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe---cCcc
Confidence            899999874  332222222     235678999999988999999999999999999998743   334444   9999


Q ss_pred             eEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec-CCceEEEEECCCCCCeEEEEEec-CcEEEEEEcCccc
Q 020107          198 VCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL-GGGVWRIKHHPFIPGLVLAACMH-NGFAVVKVGGEKA  275 (331)
Q Consensus       198 v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  275 (331)
                      |..|+|.....+.||+.+.||.+|+||+|..+........+. ..+...++|++...+++++...+ ..+.+.+++.. .
T Consensus       199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-~  277 (364)
T KOG0290|consen  199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-C  277 (364)
T ss_pred             eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-C
Confidence            999999985567899999999999999998543222212233 56789999999887777666544 56778888887 7


Q ss_pred             ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          276 EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       276 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ..+.++++|.+.|.+++|.|...        ..|.|+| +|.++.+||+...
T Consensus       278 tpva~L~~H~a~VNgIaWaPhS~--------~hictaG-DD~qaliWDl~q~  320 (364)
T KOG0290|consen  278 TPVARLRNHQASVNGIAWAPHSS--------SHICTAG-DDCQALIWDLQQM  320 (364)
T ss_pred             cceehhhcCcccccceEecCCCC--------ceeeecC-CcceEEEEecccc
Confidence            88899999999999999999987        8999999 9999999999764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=4.5e-23  Score=157.91  Aligned_cols=239  Identities=18%  Similarity=0.223  Sum_probs=182.7

Q ss_pred             EeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------------------cCccEEEEEEc-------CCCCeEE
Q 020107           69 IFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------------------SSSMCLCLEWN-------PSATSIT  121 (331)
Q Consensus        69 v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------------------~~~~v~~~~~~-------~~~~~l~  121 (331)
                      ...+.|+|+    +..|++-+.|..+ +|++.....                   ....|+..+|-       |+..+++
T Consensus        52 ~kgckWSPD----GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   52 LKGCKWSPD----GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             hccceeCCC----CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence            567899999    9999999999999 888764322                   13456666664       5677899


Q ss_pred             EEecCCeEEEEEccccceeeeeeeecccc---eeEEEeeCCCCCcEEEEEcCCCeEEEEEc-cCCCceeeeec----ccC
Q 020107          122 VGLSDGSVSIVSVVESQLEVLQQWKAHEF---ELWATSFDVHQPHMVYTGSDDCKFSGWDI-RESPFKLAFQN----SKI  193 (331)
Q Consensus       122 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~----~~~  193 (331)
                      +.+.+.-|.+||.-+++.........|..   ...+++|+| ++..|++|. ...|+++|+ |.++....+..    ..+
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~g  205 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFG  205 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccc
Confidence            99999999999999997744433333443   345899998 888887765 789999999 66654333322    223


Q ss_pred             CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      ..+.|.+++|+|.+...++.|+....+-||.-... .|+.. +.+|.+.|+.++|+++++.++..+-.++.|..|+++..
T Consensus       206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~l-lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQL-LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             ccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceee-ecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            46789999999988889999999999999987764 56655 57999999999999999655555557889999999987


Q ss_pred             ccceeEEeecCCc-ceee--eeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          274 KAEVLETYAKHGS-LAYG--ADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       274 ~~~~~~~~~~h~~-~v~~--~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                       ..++..+..|.+ .-..  ++..|++         ++|++|+ .||.|++||+++
T Consensus       284 -~~pv~~L~rhv~~TNQRI~FDld~~~---------~~LasG~-tdG~V~vwdlk~  328 (406)
T KOG2919|consen  284 -RDPVYALERHVGDTNQRILFDLDPKG---------EILASGD-TDGSVRVWDLKD  328 (406)
T ss_pred             -cchhhhhhhhccCccceEEEecCCCC---------ceeeccC-CCccEEEEecCC
Confidence             566666766655 2223  4445666         7999999 999999999987

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=7.1e-23  Score=169.76  Aligned_cols=247  Identities=18%  Similarity=0.238  Sum_probs=183.8

Q ss_pred             eEEEEcCCCCCCCCeEEEEcCCccE-EEecCC------------CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc
Q 020107           70 FDIKWSPVGGNAGPFLAQADADGGL-LRDITG------------EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE  136 (331)
Q Consensus        70 ~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  136 (331)
                      .+..|++.... ..+|+.+.+||.+ +++...            ...|...|..+.|.|....|++++.|.++++||+++
T Consensus        53 f~~sFs~~~n~-eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   53 FADSFSAAPNK-EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             ccccccCCCCc-cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence            45777775433 7899999999999 666543            223789999999999667799999999999999999


Q ss_pred             cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce--ee----------------------eeccc
Q 020107          137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK--LA----------------------FQNSK  192 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~----------------------~~~~~  192 (331)
                      .+..-...+.+|...|.+++|.|.+...|++|+.||.|.|||++.....  ..                      .....
T Consensus       132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence            8775555688999999999999999999999999999999999854310  00                      00011


Q ss_pred             CCCcceEE---EEEecCCCCEEEEEec-CCeEEEEEecCCCCCceee------eeec---CCceEEEEECCCCCCeEEEE
Q 020107          193 IHKMGVCC---IASIPSDSNTLLTGSY-DEYLRVWDVRSISKPVNET------SVCL---GGGVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       193 ~~~~~v~~---~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~------~~~~---~~~v~~~~~~~~~~~~~~~~  259 (331)
                      ++...|.+   +.+.. |...||+++. |+.|++||++.........      ...|   ...+.++.....| .+++++
T Consensus       212 A~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~As  289 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFAS  289 (720)
T ss_pred             cccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEE
Confidence            23333443   44444 7888999887 9999999999864322210      1122   2357777877777 788899


Q ss_pred             EecCcEEEEEEcCcccceeEEeecCCccee--eeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAY--GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      |.|+.|..|++.......+..+.++...-.  .-..+|++         .++++|+ .|...++|.+.+-.+
T Consensus       290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~---------~~l~SgS-sd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD---------CSLLSGS-SDEQAYIWVVSSPEA  351 (720)
T ss_pred             ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC---------ceEeccC-CCcceeeeeecCccC
Confidence            999999999998877777777776643221  23467887         7999999 999999999987543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.92  E-value=2.7e-22  Score=171.27  Aligned_cols=270  Identities=15%  Similarity=0.159  Sum_probs=206.7

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------------cCccE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------------SSSMC  108 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------------~~~~v  108 (331)
                      .++.+.+|++.....+ ...+ .-...|.++.|+|.+   ..+++.|..+|.+ +||+.....            |..++
T Consensus       220 ~~~~~~vW~~~~p~~P-e~~~-~~~s~v~~~~f~p~~---p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  220 PDGVLLVWSLKNPNTP-ELVL-ESPSEVTCLKFCPFD---PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPV  294 (555)
T ss_pred             CCceEEEEecCCCCCc-eEEE-ecCCceeEEEeccCC---cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCe
Confidence            3458999999987423 3332 345789999999997   4599999999999 999987543            67889


Q ss_pred             EEEEEcCCCCe--EEEEecCCeEEEEEcccccee----eeeeee------cccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107          109 LCLEWNPSATS--ITVGLSDGSVSIVSVVESQLE----VLQQWK------AHEFELWATSFDVHQPHMVYTGSDDCKFSG  176 (331)
Q Consensus       109 ~~~~~~~~~~~--l~~~~~dg~i~i~d~~~~~~~----~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (331)
                      ..+.|..+...  +++++.||.|..|+++.-...    +.....      .....+++++|.+.+++.++.|+.+|.|.-
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~  374 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK  374 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence            99999775544  999999999999988752110    000011      123468899999989999999999999877


Q ss_pred             EEccCCCcee-----eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107          177 WDIRESPFKL-----AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       177 ~d~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  251 (331)
                      -+....+...     .......|.++|+++.++|.....+++++ |.+++||.......|+.. +..+...+++++|||.
T Consensus       375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~-~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLS-LDSSPDYVTDVAWSPT  452 (555)
T ss_pred             EeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchh-hhhccceeeeeEEcCc
Confidence            4433222111     11122348999999999997777888887 999999999854577766 4566777999999999


Q ss_pred             CCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          252 IPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      .+..++++..++.+.+|++......++.+.+-+....+.+.|++.+         ++|+.|. ..|.+++|++...+
T Consensus       453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g---------~~lavGd-~~G~~~~~~l~~~l  519 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG---------KLLAVGD-ANGTTHILKLSESL  519 (555)
T ss_pred             CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCC---------cEEEEec-CCCcEEEEEcCchh
Confidence            9888888888999999999887777777776667777888999988         6999999 99999999997543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=8.5e-23  Score=156.16  Aligned_cols=215  Identities=12%  Similarity=0.110  Sum_probs=162.5

Q ss_pred             EEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce---eeeeeeecccceeEEEeeCCCCCcEEEEEcCC
Q 020107           95 LRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL---EVLQQWKAHEFELWATSFDVHQPHMVYTGSDD  171 (331)
Q Consensus        95 iw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  171 (331)
                      -|++...+.|...|++++|+.+|+.|++++.|++|++|+++.-..   .+++.-. .-+..+.+.|.|+....++++-..
T Consensus        76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g  154 (420)
T KOG2096|consen   76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRG  154 (420)
T ss_pred             chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccC
Confidence            566667777899999999999999999999999999999986221   1111111 122467899999767778888888


Q ss_pred             CeEEEEEccCCCc---eee------eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107          172 CKFSGWDIRESPF---KLA------FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG  242 (331)
Q Consensus       172 g~i~i~d~~~~~~---~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  242 (331)
                      .++++|-+...+.   ...      +...+.|+..+..+-... ++.+|++++.|..|.+|+++.  +.+.. .......
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lkG--q~L~~-idtnq~~  230 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLKG--QLLQS-IDTNQSS  230 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecCC--ceeee-ecccccc
Confidence            8999998764321   111      112233677777777776 889999999999999999993  44444 2344455


Q ss_pred             eEEEEECCCCCCeEEEEEecCcEEEEEEcCcc------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC
Q 020107          243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD  316 (331)
Q Consensus       243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d  316 (331)
                      -+..+.+|+| .++++++..-.+++|.+--..      -..+..++||...|..++|+++.         ..++|++ .|
T Consensus       231 n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S---------~r~vtvS-kD  299 (420)
T KOG2096|consen  231 NYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS---------TRAVTVS-KD  299 (420)
T ss_pred             ccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc---------ceeEEEe-cC
Confidence            6778999997 777777788888899874321      33466788999999999999998         7999999 99


Q ss_pred             CeEEEEcCC
Q 020107          317 RLLRIWMPE  325 (331)
Q Consensus       317 ~~i~iW~~~  325 (331)
                      |+++|||.+
T Consensus       300 G~wriwdtd  308 (420)
T KOG2096|consen  300 GKWRIWDTD  308 (420)
T ss_pred             CcEEEeecc
Confidence            999999975

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.91  E-value=3.6e-23  Score=158.70  Aligned_cols=255  Identities=14%  Similarity=0.211  Sum_probs=191.6

Q ss_pred             EeEeeecCcEeEEEEcCCC-CCCCCeEEEEcCCccEEEecCC-----------CcccCccEEEEEEcCC----CCeEEEE
Q 020107           60 LLYRMDTAGIFDIKWSPVG-GNAGPFLAQADADGGLLRDITG-----------EKISSSMCLCLEWNPS----ATSITVG  123 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~-~~~~~~l~~~~~dg~iiw~~~~-----------~~~~~~~v~~~~~~~~----~~~l~~~  123 (331)
                      .+...|+.+|..++|++-. .+....+++++.+...+++...           ...+....+.++|+-+    ..++|+|
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            3456678899999998531 1114467777766555443322           1225666778888754    4578999


Q ss_pred             ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEE
Q 020107          124 LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIAS  203 (331)
Q Consensus       124 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  203 (331)
                      +.-|.|+|.|+.+++.  ...+.+|...|+.+.++|.+++++++++.|..|++|++++..++.++-...+|.+.|.++.|
T Consensus       112 G~~GvIrVid~~~~~~--~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQC--SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             cceeEEEEEecchhhh--ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence            9999999999998855  78899999999999999998999999999999999999999999999998899999999999


Q ss_pred             ecCCCCEEEEEecCCeEEEEEecCCC--C------------------------CceeeeeecCCceEEEEECCCCCCeEE
Q 020107          204 IPSDSNTLLTGSYDEYLRVWDVRSIS--K------------------------PVNETSVCLGGGVWRIKHHPFIPGLVL  257 (331)
Q Consensus       204 ~~~~~~~l~~~~~d~~i~iwd~~~~~--~------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~  257 (331)
                      ++ ++.+|++++.|.+|++|++...+  .                        |.......|...|-|++|-.   .+++
T Consensus       190 ~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~il  265 (385)
T KOG1034|consen  190 SL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFIL  265 (385)
T ss_pred             cC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hhee
Confidence            99 99999999999999999998321  0                        01001234666777777776   4677


Q ss_pred             EEEecCcEEEEEEcCcc------------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          258 AACMHNGFAVVKVGGEK------------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       258 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      +-+.++.|..|......            ...+.++.-....++-+.|.-|-       -+++||.|. ..|.|.+||++
T Consensus       266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-------~~~~la~gn-q~g~v~vwdL~  337 (385)
T KOG1034|consen  266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-------WQKMLALGN-QSGKVYVWDLD  337 (385)
T ss_pred             ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-------HHHHHhhcc-CCCcEEEEECC
Confidence            87888888888873211            12344455555667766665442       127899998 99999999998


Q ss_pred             Ccc
Q 020107          326 SDC  328 (331)
Q Consensus       326 ~~~  328 (331)
                      +..
T Consensus       338 ~~e  340 (385)
T KOG1034|consen  338 NNE  340 (385)
T ss_pred             CCC
Confidence            754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.5e-22  Score=156.01  Aligned_cols=276  Identities=18%  Similarity=0.201  Sum_probs=195.2

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI  103 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~  103 (331)
                      ..+|++-          .+|.|++||..+.+ .+. .++++...++.++|.....  ...+.+|+.||.+ +||++....
T Consensus        41 ~~vav~l----------Sngsv~lyd~~tg~-~l~-~fk~~~~~~N~vrf~~~ds--~h~v~s~ssDG~Vr~wD~Rs~~e  106 (376)
T KOG1188|consen   41 TAVAVSL----------SNGSVRLYDKGTGQ-LLE-EFKGPPATTNGVRFISCDS--PHGVISCSSDGTVRLWDIRSQAE  106 (376)
T ss_pred             eeEEEEe----------cCCeEEEEeccchh-hhh-eecCCCCcccceEEecCCC--CCeeEEeccCCeEEEEEeecchh
Confidence            4688886          79999999999965 344 4588888999999987421  5689999999999 999987543


Q ss_pred             ---------cCccEEEEEEcCCCCeEEEEec----CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC
Q 020107          104 ---------SSSMCLCLEWNPSATSITVGLS----DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD  170 (331)
Q Consensus       104 ---------~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  170 (331)
                               ...+..+++.+-.++.+++|..    +-.|.+||++..+...-.-...|...|+++.|+|.++++|++|+.
T Consensus       107 ~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSv  186 (376)
T KOG1188|consen  107 SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSV  186 (376)
T ss_pred             hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecc
Confidence                     2346677777667788888865    778999999976532223346799999999999999999999999


Q ss_pred             CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee-cCCce------
Q 020107          171 DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC-LGGGV------  243 (331)
Q Consensus       171 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v------  243 (331)
                      ||.|.+||+......-.+...-.|...|.++.|....-+.+.+-+..++..+|++..+...... ..+ ....+      
T Consensus       187 DGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~-~~~~~~~~d~r~~~~  265 (376)
T KOG1188|consen  187 DGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL-ENPDVSADDLRKEDN  265 (376)
T ss_pred             cceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc-cCccchhhhHHhhhh
Confidence            9999999998654322221112278889999999723346888888999999999886422221 111 01100      


Q ss_pred             --EEE-EECCCCCCeEEEEEe-cCcEEEEEEcCc----ccceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107          244 --WRI-KHHPFIPGLVLAACM-HNGFAVVKVGGE----KAEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       244 --~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  314 (331)
                        +-| +.+|.....++.++. .+...++.+...    ..+.+..+.+ |...|.++.|...+         .++.||| 
T Consensus       266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~---------~~l~TGG-  335 (376)
T KOG1188|consen  266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN---------DVLYTGG-  335 (376)
T ss_pred             hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc---------ceeeccC-
Confidence              011 223554456665555 455555555431    1334445555 77788888888776         6999999 


Q ss_pred             CCCeEEEEcCC
Q 020107          315 YDRLLRIWMPE  325 (331)
Q Consensus       315 ~d~~i~iW~~~  325 (331)
                      +||.|.+|..+
T Consensus       336 EDG~l~~Wk~~  346 (376)
T KOG1188|consen  336 EDGLLQAWKVE  346 (376)
T ss_pred             CCceEEEEecC
Confidence            99999999953

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=6e-22  Score=165.74  Aligned_cols=288  Identities=16%  Similarity=0.179  Sum_probs=205.1

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+.|+.|.|.+....++++|.          .||.|.+|.+......-.....+|...+.++  +..    .....+..
T Consensus        55 a~VnC~~~l~~s~~~a~~vsG~----------sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~----~~~~~~~~  118 (764)
T KOG1063|consen   55 ARVNCVHWLPTSEIVAEMVSGD----------SDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VAR----SSVMTCKA  118 (764)
T ss_pred             cceEEEEEcccccccceEEEcc----------CCCcEEEEEEeehheEEEEeecCcceeEEEE--Eee----eeEEEeec
Confidence            3577888888874334888987          8999999999954312222223345555444  443    22444457


Q ss_pred             CCccE-EEecCCCcc----------cCccEEEEEEcCCC-C-eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107           90 ADGGL-LRDITGEKI----------SSSMCLCLEWNPSA-T-SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~----------~~~~v~~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  156 (331)
                      .|+.+ +|+.+..+.          ..-...|+++.++. . .++.|+.+..|.++.-...++..+..+.+|...|.+++
T Consensus       119 ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~  198 (764)
T KOG1063|consen  119 ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLA  198 (764)
T ss_pred             cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhh
Confidence            88888 999965542          11112455555533 3 36777788889998877777777889999999999999


Q ss_pred             eCCCCC--cEEEEEcCCCeEEEEEccCCCce---------------------eeee-------cccCCCcceEEEEEecC
Q 020107          157 FDVHQP--HMVYTGSDDCKFSGWDIRESPFK---------------------LAFQ-------NSKIHKMGVCCIASIPS  206 (331)
Q Consensus       157 ~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~---------------------~~~~-------~~~~~~~~v~~~~~~~~  206 (331)
                      |....+  -++++++.|..||||.+.-....                     ..++       ...+|.+.|+++.|+| 
T Consensus       199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-  277 (764)
T KOG1063|consen  199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-  277 (764)
T ss_pred             hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-
Confidence            986433  57899999999999988643310                     0111       1236999999999999 


Q ss_pred             CCCEEEEEecCCeEEEEEecCCCCCceee-----eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc-ccceeEE
Q 020107          207 DSNTLLTGSYDEYLRVWDVRSISKPVNET-----SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE-KAEVLET  280 (331)
Q Consensus       207 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  280 (331)
                      .+..|++++.|.++.+|......-.....     ..+..+..+...|+|++ ..+++.+..++.++|.-.+. .......
T Consensus       278 ~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~w~~~~~  356 (764)
T KOG1063|consen  278 EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKTFWTQEPV  356 (764)
T ss_pred             chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcEEEEeccCccceeeccc
Confidence            88899999999999999887632221110     11224468899999998 78889999999888882221 1234445


Q ss_pred             eecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          281 YAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       281 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      ..||...|.+++|.|.|         .+|+|+| .|.+-|++-.-
T Consensus       357 iSGH~~~V~dv~W~psG---------eflLsvs-~DQTTRlFa~w  391 (764)
T KOG1063|consen  357 ISGHVDGVKDVDWDPSG---------EFLLSVS-LDQTTRLFARW  391 (764)
T ss_pred             cccccccceeeeecCCC---------CEEEEec-cccceeeeccc
Confidence            67999999999999999         6999999 99999998654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.91  E-value=2e-22  Score=167.41  Aligned_cols=122  Identities=18%  Similarity=0.311  Sum_probs=105.7

Q ss_pred             CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC-----ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107          195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP-----VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK  269 (331)
Q Consensus       195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (331)
                      ...|+.+.|.|++...|++++.||.|++|.+.....+     ....+..|...|+++.|+|-....+++++.+..|++|+
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            3458889999999999999999999999999764321     12236789999999999997768888999999999999


Q ss_pred             EcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          270 VGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       270 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +..  ......+.+|++.|.+++|+|+|         +.+|+.+ .||+|++|+..++.
T Consensus       707 l~~--~~~~~~l~gHtdqIf~~AWSpdG---------r~~AtVc-KDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  707 LAN--AKLYSRLVGHTDQIFGIAWSPDG---------RRIATVC-KDGTLRVYEPRSRE  753 (1012)
T ss_pred             hhh--hhhhheeccCcCceeEEEECCCC---------cceeeee-cCceEEEeCCCCCC
Confidence            998  47777899999999999999999         8999999 99999999998764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=1.7e-21  Score=166.24  Aligned_cols=277  Identities=16%  Similarity=0.188  Sum_probs=219.9

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      .+.+....|+|..   ..+++++          .|+.+++|-.+.+..  .+-....+|..+..+++|.-.+   +..+.
T Consensus       288 ~~sv~~~~fl~~e---pVl~ta~----------~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~---g~~il  351 (910)
T KOG1539|consen  288 YGSVTGATFLPGE---PVLVTAG----------ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ---GHFIL  351 (910)
T ss_pred             cCCcccceecCCC---ceEeecc----------CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC---cEEEE
Confidence            4566677777776   4777776          688888887765432  3444567899999999998554   88999


Q ss_pred             EEcCCccE-E-----------------------------------------------------------------EecCC
Q 020107           87 QADADGGL-L-----------------------------------------------------------------RDITG  100 (331)
Q Consensus        87 ~~~~dg~i-i-----------------------------------------------------------------w~~~~  100 (331)
                      +++.|++. .                                                                 |+...
T Consensus       352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n  431 (910)
T KOG1539|consen  352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN  431 (910)
T ss_pred             ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence            99999866 1                                                                 11110


Q ss_pred             Ccc------c------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee---ecccceeEEEeeCCCCCcEE
Q 020107          101 EKI------S------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW---KAHEFELWATSFDVHQPHMV  165 (331)
Q Consensus       101 ~~~------~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l  165 (331)
                      ...      +      ...+++++.++-|++.+.|+..|.|-+|++.++-.  ...+   ..|..+|+.++... -++.+
T Consensus       432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~--r~sf~~~~ah~~~V~gla~D~-~n~~~  508 (910)
T KOG1539|consen  432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH--RKSFGDSPAHKGEVTGLAVDG-TNRLL  508 (910)
T ss_pred             cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee--ecccccCccccCceeEEEecC-CCceE
Confidence            000      1      24678889999999999999999999999998743  4455   57999999999985 67889


Q ss_pred             EEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEE
Q 020107          166 YTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWR  245 (331)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~  245 (331)
                      ++++.+|.+++||..+...+..+..    ...+.++..+. ...+++.+..|-.|+++|..+. +.+.+ +.+|...|+.
T Consensus       509 vsa~~~Gilkfw~f~~k~l~~~l~l----~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~-kvvR~-f~gh~nritd  581 (910)
T KOG1539|consen  509 VSAGADGILKFWDFKKKVLKKSLRL----GSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTR-KVVRE-FWGHGNRITD  581 (910)
T ss_pred             EEccCcceEEEEecCCcceeeeecc----CCCcceeeeee-hhhhhhhhcCceeEEEEEchhh-hhhHH-hhccccceee
Confidence            9999999999999998876666665    67788888888 7889999999999999999984 44444 6889999999


Q ss_pred             EEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC-CeEEEEcC
Q 020107          246 IKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD-RLLRIWMP  324 (331)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d-~~i~iW~~  324 (331)
                      ++|||++ ..+++++.|..|++|++..  +.++-.+. -..+++++.|+|++         .+|||+. .| .-|++|.=
T Consensus       582 ~~FS~Dg-rWlisasmD~tIr~wDlpt--~~lID~~~-vd~~~~sls~SPng---------D~LAT~H-vd~~gIylWsN  647 (910)
T KOG1539|consen  582 MTFSPDG-RWLISASMDSTIRTWDLPT--GTLIDGLL-VDSPCTSLSFSPNG---------DFLATVH-VDQNGIYLWSN  647 (910)
T ss_pred             eEeCCCC-cEEEEeecCCcEEEEeccC--cceeeeEe-cCCcceeeEECCCC---------CEEEEEE-ecCceEEEEEc
Confidence            9999998 7888899999999999988  46665554 36788999999999         6999999 77 78999964


Q ss_pred             C
Q 020107          325 E  325 (331)
Q Consensus       325 ~  325 (331)
                      .
T Consensus       648 k  648 (910)
T KOG1539|consen  648 K  648 (910)
T ss_pred             h
Confidence            3

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=6.9e-22  Score=149.23  Aligned_cols=249  Identities=17%  Similarity=0.198  Sum_probs=178.3

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--------eEEeEeeecCcEeEEEEcCCCCC
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--------LELLYRMDTAGIFDIKWSPVGGN   80 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~   80 (331)
                      .|.+..++-+|+.+  .+|++.. ...+.  ...--.+.||.+.+...+        +..+...+-+.|.|+.|.|+   
T Consensus        63 agEvw~las~P~d~--~ilaT~y-n~~s~--s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn---  134 (370)
T KOG1007|consen   63 AGEVWDLASSPFDQ--RILATVY-NDTSD--SGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN---  134 (370)
T ss_pred             CcceehhhcCCCCC--ceEEEEE-eccCC--CcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC---
Confidence            46778888899886  6777764 32111  001135789998765432        22232334568999999998   


Q ss_pred             CCCeEEEEcCCccEEEecCCCcc------------cCccEEEEEEcC--CCCeEEEEecCCeEEEEEccccceeeeeeee
Q 020107           81 AGPFLAQADADGGLLRDITGEKI------------SSSMCLCLEWNP--SATSITVGLSDGSVSIVSVVESQLEVLQQWK  146 (331)
Q Consensus        81 ~~~~l~~~~~dg~iiw~~~~~~~------------~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  146 (331)
                       +..+++-..+..++|++.....            +....++-+|+|  +++.+++ ..|+++..||+++.+. ....-.
T Consensus       135 -s~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~-~~sI~d  211 (370)
T KOG1007|consen  135 -SDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKK-NNSIED  211 (370)
T ss_pred             -CCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhh-hcchhh
Confidence             8888888755555999876543            244566778998  5665655 4569999999997542 233345


Q ss_pred             cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107          147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR  226 (331)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~  226 (331)
                      .|...|..+.|+|+...+|++|++||.|++||.|..+ .+.... ++|...|.++.|+|....++++|+.|..|.+|...
T Consensus       212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-~pv~el-~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-FPVQEL-PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-cccccc-CCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            7888999999999888899999999999999999765 233333 55999999999999888999999999999999764


Q ss_pred             CCC-----------------------CCce----eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          227 SIS-----------------------KPVN----ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       227 ~~~-----------------------~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                      .-.                       +|+.    +....|...|++++|+...+-.+++-+.|+++.|=++
T Consensus       290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence            321                       1111    1346788999999999988666666666666544333

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.5e-20  Score=138.75  Aligned_cols=264  Identities=16%  Similarity=0.235  Sum_probs=192.0

Q ss_pred             EeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-------ce-EEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107           15 VEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-------NL-ELLYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus        15 v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-------~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      -+++|..   ++|++|.          .+|.|.++.++....       +. ....++|.++|+.++|..+      +|+
T Consensus        16 qa~sp~~---~~l~agn----------~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~------~Ll   76 (325)
T KOG0649|consen   16 QAISPSK---QYLFAGN----------LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD------FLL   76 (325)
T ss_pred             HhhCCcc---eEEEEec----------CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh------hee
Confidence            3455555   8999998          799999999864211       12 2223789999999999966      777


Q ss_pred             EEcCCccE---EEecCCC-----------------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee
Q 020107           87 QADADGGL---LRDITGE-----------------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK  146 (331)
Q Consensus        87 ~~~~dg~i---iw~~~~~-----------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  146 (331)
                      +|+. |.+   .|+-...                 ...-..|+++...|..+.++.++.|+.++-||++++++  .+.++
T Consensus        77 s~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i--~r~~r  153 (325)
T KOG0649|consen   77 SGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI--QREYR  153 (325)
T ss_pred             eccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE--EEEEc
Confidence            7765 888   4432211                 01234578999999988888888999999999999976  78899


Q ss_pred             cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc------C-CCcceEEEEEecCCCCEEEEEecCCe
Q 020107          147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK------I-HKMGVCCIASIPSDSNTLLTGSYDEY  219 (331)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~-~~~~v~~~~~~~~~~~~l~~~~~d~~  219 (331)
                      +|...+.++.--. ....+++|+.||++|+||.++++....+...+      + -...|.+++.   +..+|+.|+ ...
T Consensus       154 GHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~  228 (325)
T KOG0649|consen  154 GHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPK  228 (325)
T ss_pred             CCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCc
Confidence            9999999998753 55779999999999999999998877665422      1 1334667766   457777775 467


Q ss_pred             EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCc
Q 020107          220 LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSS  299 (331)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  299 (331)
                      +.+|.++.. .+...  .+..+++..+.|..+   .++++|..+.+.-|.+..   .+...........++..|+...- 
T Consensus       229 lslwhLrss-e~t~v--fpipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~G---vl~a~ip~~s~~c~s~s~~~~p~-  298 (325)
T KOG0649|consen  229 LSLWHLRSS-ESTCV--FPIPARVHLVDFVDD---CVLIGGEGNHVQSYTLNG---VLQANIPVESTACYSASWQTSPI-  298 (325)
T ss_pred             eeEEeccCC-CceEE--EecccceeEeeeecc---eEEEeccccceeeeeecc---EEEEeccCCccceeeecccCCce-
Confidence            999999985 56665  788899999999875   566776667666666653   44444444444566776665542 


Q ss_pred             ccccccCcEEEEeecCCCeEEEEc
Q 020107          300 LEGKRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       300 ~~~~~~~~~l~s~~~~d~~i~iW~  323 (331)
                             ++|-.+| ..+.+.|..
T Consensus       299 -------k~~s~ag-~s~~~~i~~  314 (325)
T KOG0649|consen  299 -------KFISIAG-FSNKLHILK  314 (325)
T ss_pred             -------EEEEecc-cceeeeeee
Confidence                   5777777 778887753

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=4.7e-22  Score=167.25  Aligned_cols=240  Identities=18%  Similarity=0.142  Sum_probs=195.3

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+.+|+.+|.+   +.||+|.          .-|.++||++.+.+  .......|...|.++.|+..... .++||+++.
T Consensus       461 G~R~~~vSp~g---qhLAsGD----------r~GnlrVy~Lq~l~--~~~~~eAHesEilcLeyS~p~~~-~kLLASasr  524 (1080)
T KOG1408|consen  461 GFRALAVSPDG---QHLASGD----------RGGNLRVYDLQELE--YTCFMEAHESEILCLEYSFPVLT-NKLLASASR  524 (1080)
T ss_pred             ceEEEEECCCc---ceecccC----------ccCceEEEEehhhh--hhhheecccceeEEEeecCchhh-hHhhhhccC
Confidence            45667777666   9999997          89999999999876  44455789999999999965433 678999999


Q ss_pred             CccE-EEecCC-------CcccCccEEEEEEcCCC--CeEEEEecCCeEEEEEccc----cceeeeeeeecccceeEEEe
Q 020107           91 DGGL-LRDITG-------EKISSSMCLCLEWNPSA--TSITVGLSDGSVSIVSVVE----SQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        91 dg~i-iw~~~~-------~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~  156 (331)
                      |..| ++|+..       ...|...|+++.|.-.|  ..+++++.|..|.+ +...    +..-+..+-......++.++
T Consensus       525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~  603 (1080)
T KOG1408|consen  525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMA  603 (1080)
T ss_pred             CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEee
Confidence            9999 888754       33478999999998877  56889999988764 4333    22111111111235789999


Q ss_pred             eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107          157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  236 (331)
                      ..| ..+++++++.|..|+|||+.+++..+.|+....|.+....+...| .+.|+++.+.|.++.++|+-++ +++.+ .
T Consensus       604 Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sg-EcvA~-m  679 (1080)
T KOG1408|consen  604 VDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSG-ECVAQ-M  679 (1080)
T ss_pred             eCC-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccc-hhhhh-h
Confidence            999 789999999999999999999999999998778888899999999 9999999999999999999996 44544 5


Q ss_pred             eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      .+|...|+.+.|.+|- ..+++.++|+.|.+|++..
T Consensus       680 ~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  680 TGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cCcchheeeeeecccc-hhheeecCCceEEEEECch
Confidence            8999999999999998 6677888899999999865

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=8.9e-20  Score=150.35  Aligned_cols=254  Identities=13%  Similarity=0.163  Sum_probs=173.3

Q ss_pred             CcceeEeeecCCCCCcEE-EEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107           10 GNADAVEFCPQDSYHHVL-AASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~l-a~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ..+..+.|+|.+   ..+ +++.          .++.|++||..+.+ ....+ ..+ ..+..++|+|+    ++.++++
T Consensus        31 ~~~~~l~~~~dg---~~l~~~~~----------~~~~v~~~d~~~~~-~~~~~-~~~-~~~~~~~~~~~----g~~l~~~   90 (300)
T TIGR03866        31 QRPRGITLSKDG---KLLYVCAS----------DSDTIQVIDLATGE-VIGTL-PSG-PDPELFALHPN----GKILYIA   90 (300)
T ss_pred             CCCCceEECCCC---CEEEEEEC----------CCCeEEEEECCCCc-EEEec-cCC-CCccEEEECCC----CCEEEEE
Confidence            345678887765   555 5555          58999999998765 23323 223 33567899999    7766554


Q ss_pred             -cCCccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEecCC-eEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           89 -DADGGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLSDG-SVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        89 -~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                       ..++.+ +|++.+.+..     ...+.+++|+|+++.++++..++ .+.+||.++++.  ..... .......++|+| 
T Consensus        91 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~--~~~~~-~~~~~~~~~~s~-  166 (300)
T TIGR03866        91 NEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI--VDNVL-VDQRPRFAEFTA-  166 (300)
T ss_pred             cCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE--EEEEE-cCCCccEEEECC-
Confidence             567888 9999875431     23467899999999999988765 567789877643  33332 223457899998 


Q ss_pred             CCcEE-EEEcCCCeEEEEEccCCCceeeeecc--cCC--CcceEEEEEecCCCCEEEE-EecCCeEEEEEecCCCCCcee
Q 020107          161 QPHMV-YTGSDDCKFSGWDIRESPFKLAFQNS--KIH--KMGVCCIASIPSDSNTLLT-GSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       161 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~--~~~v~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      ++..+ +++..++.|++||+++++....+...  ..+  ......+.|+| +++++++ .+.++.+.+||+++. +....
T Consensus       167 dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~-~~~~~  244 (300)
T TIGR03866       167 DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTY-EVLDY  244 (300)
T ss_pred             CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence            66666 45557999999999988765554421  001  11245688999 8877544 455778999999874 33333


Q ss_pred             eeeecCCceEEEEECCCCCCeEEEE-EecCcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107          235 TSVCLGGGVWRIKHHPFIPGLVLAA-CMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR  295 (331)
Q Consensus       235 ~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  295 (331)
                        ..+...+.+++|+|++ ..++++ +.++.+.+|++..  ++.+.++... ...++++++|
T Consensus       245 --~~~~~~~~~~~~~~~g-~~l~~~~~~~~~i~v~d~~~--~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       245 --LLVGQRVWQLAFTPDE-KYLLTTNGVSNDVSVIDVAA--LKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             --EEeCCCcceEEECCCC-CEEEEEcCCCCeEEEEECCC--CcEEEEEEcc-cccceeEeCC
Confidence              3456689999999997 445544 4578899999887  5777777653 5558888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.9e-21  Score=154.56  Aligned_cols=235  Identities=16%  Similarity=0.167  Sum_probs=190.0

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCC-eEEEEecCCeEEEEEcc
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVV  135 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~  135 (331)
                      .++|++|.|+|.    ..+|++|+.|+.+ ++.+....-        ...+|.+..|.|+|. .+++++....++.||+.
T Consensus       213 ~~~I~sv~FHp~----~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPT----APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEecCC----CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            467999999999    8899999999999 888876432        378899999999999 79999999999999999


Q ss_pred             ccceeeeeeeeccc-ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107          136 ESQLEVLQQWKAHE-FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       136 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      +.+...+....++. ..+.....+| ++++|+..+..|.|.+....+++.+..+..    .+.|..++|+. ++..|+++
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~Ki----eG~v~~~~fsS-dsk~l~~~  362 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKI----EGVVSDFTFSS-DSKELLAS  362 (514)
T ss_pred             ccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeee----ccEEeeEEEec-CCcEEEEE
Confidence            98877776666654 3567788887 788999999999999999999988888886    88999999998 88999999


Q ss_pred             ecCCeEEEEEecCCCCCceeeeeecCCce--EEEEECCCCCCeEEEEEecCcEEEEEEcCc-------ccceeEEeecCC
Q 020107          215 SYDEYLRVWDVRSISKPVNETSVCLGGGV--WRIKHHPFIPGLVLAACMHNGFAVVKVGGE-------KAEVLETYAKHG  285 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~h~  285 (331)
                      +.+|.|.+||++.. .++..  ....+.|  ++++.+++  +.++++|++.+  ++++++.       .++++.++..-.
T Consensus       363 ~~~GeV~v~nl~~~-~~~~r--f~D~G~v~gts~~~S~n--g~ylA~GS~~G--iVNIYd~~s~~~s~~PkPik~~dNLt  435 (514)
T KOG2055|consen  363 GGTGEVYVWNLRQN-SCLHR--FVDDGSVHGTSLCISLN--GSYLATGSDSG--IVNIYDGNSCFASTNPKPIKTVDNLT  435 (514)
T ss_pred             cCCceEEEEecCCc-ceEEE--EeecCccceeeeeecCC--CceEEeccCcc--eEEEeccchhhccCCCCchhhhhhhh
Confidence            99999999999985 55555  3344444  55666677  55777777777  5555542       267777887788


Q ss_pred             cceeeeeecCCCCcccccccCcEEEEeec-CCCeEEEEcCCC
Q 020107          286 SLAYGADWQRGRSSLEGKRKNSLVATCSF-YDRLLRIWMPES  326 (331)
Q Consensus       286 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-~d~~i~iW~~~~  326 (331)
                      ..|+++.|+++.         ++||.+|. .+..+|+-.+.+
T Consensus       436 t~Itsl~Fn~d~---------qiLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  436 TAITSLQFNHDA---------QILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             eeeeeeeeCcch---------hhhhhhhhccccceEEEeccc
Confidence            899999999998         68877763 456777766544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=8e-21  Score=149.71  Aligned_cols=288  Identities=20%  Similarity=0.221  Sum_probs=205.4

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-------ceEEeEeeecCcEeEEEEcCCCCCC
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-------NLELLYRMDTAGIFDIKWSPVGGNA   81 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~   81 (331)
                      ..++..+.|.+...  +.||+|+          .|..|++|.+.....       .....+..|..+|+++.|+|+    
T Consensus        13 ~~pv~s~dfq~n~~--~~laT~G----------~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~----   76 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSL--NKLATAG----------GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD----   76 (434)
T ss_pred             CCceEEEEeccCcc--cceeccc----------CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC----
Confidence            34677888887764  4899998          799999999865431       133345679999999999999    


Q ss_pred             CCeEEEEcCCccE-EEecC--------C-----C---------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc
Q 020107           82 GPFLAQADADGGL-LRDIT--------G-----E---------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ  138 (331)
Q Consensus        82 ~~~l~~~~~dg~i-iw~~~--------~-----~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  138 (331)
                      +++||+|+.+|.+ +|...        +     .         ..|...++.++|+|++.++++++-|..+++||+..++
T Consensus        77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~  156 (434)
T KOG1009|consen   77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ  156 (434)
T ss_pred             cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence            9999999999999 89776        2     0         0146788999999999999999999999999999986


Q ss_pred             eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee-----cccC-----------C----Ccce
Q 020107          139 LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ-----NSKI-----------H----KMGV  198 (331)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~-----------~----~~~v  198 (331)
                      .  ...+..|...+..++|.| -++++++-+.|...+.+.+...+......     ....           |    ..-.
T Consensus       157 l--~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF  233 (434)
T KOG1009|consen  157 L--LAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF  233 (434)
T ss_pred             e--Eeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence            5  777888999999999999 67889998888877777776543322211     0000           1    1224


Q ss_pred             EEEEEecCCCCEEEEEec----C-----CeEEEEEecCCCCCceeeeeecCCceEEEEECCCC----------------C
Q 020107          199 CCIASIPSDSNTLLTGSY----D-----EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI----------------P  253 (331)
Q Consensus       199 ~~~~~~~~~~~~l~~~~~----d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~  253 (331)
                      ..++|+| ++.++++.+.    +     ++.++|+-...++|... +.....++..++|+|-.                -
T Consensus       234 rRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~-lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpy  311 (434)
T KOG1009|consen  234 RRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR-LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPY  311 (434)
T ss_pred             hhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceee-cCCCCcceEEEEeeeeEEEecccccccccccccc
Confidence            5677889 8888888642    2     23456665555555554 33444555555555410                0


Q ss_pred             CeEEEEEecCcEEEEEEcCcccceeEEee-cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          254 GLVLAACMHNGFAVVKVGGEKAEVLETYA-KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +++++....+.+.+|+....  .++.... -|-..+++++|++++         ..++..| .||...+-.++..++
T Consensus       312 rlvfaiAt~~svyvydtq~~--~P~~~v~nihy~~iTDiaws~dg---------~~l~vSS-~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  312 RLVFAIATKNSVYVYDTQTL--EPLAVVDNIHYSAITDIAWSDDG---------SVLLVSS-TDGFCSLVTFEPWEL  376 (434)
T ss_pred             ceEEEEeecceEEEeccccc--cceEEEeeeeeeeecceeecCCC---------cEEEEec-cCCceEEEEEcchhc
Confidence            34556666777777765553  4444433 488899999999999         5888877 899877766655443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=5.1e-21  Score=157.85  Aligned_cols=241  Identities=16%  Similarity=0.188  Sum_probs=187.6

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEcCCCCe--EEEEecCCeE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPSATS--ITVGLSDGSV  129 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~--l~~~~~dg~i  129 (331)
                      ...++++|++.|.+|...|.    +.+|++|+.||++ +|.+.++.+.     .+.|.|++|+|.+..  ||++.... +
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~----G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~  466 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPS----GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-V  466 (733)
T ss_pred             eeeeEeccCCeEEEEEecCC----cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-e
Confidence            56778999999999999999    9999999999999 9999999873     678999999997764  44443333 4


Q ss_pred             EEEEcccc---------------------------------c--eeeeeeeecccceeEEEeeCCCCCcEEEEEcCC---
Q 020107          130 SIVSVVES---------------------------------Q--LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD---  171 (331)
Q Consensus       130 ~i~d~~~~---------------------------------~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---  171 (331)
                      .|.+..-+                                 .  ...+.....|...|..+.|+. .+.+|++...+   
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~  545 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGN  545 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCc
Confidence            44432211                                 0  001122234778899999997 88999887653   


Q ss_pred             CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107          172 CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  251 (331)
                      ..|.|+++........|+.   ..+.|.++.|+| ...+|++++. ..|++||+... ..+.. +......|..++.+|.
T Consensus       546 ~~VliHQLSK~~sQ~PF~k---skG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kq-elvKk-L~tg~kwiS~msihp~  618 (733)
T KOG0650|consen  546 KSVLIHQLSKRKSQSPFRK---SKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQ-ELVKK-LLTGSKWISSMSIHPN  618 (733)
T ss_pred             ceEEEEecccccccCchhh---cCCceeEEEecC-CCceEEEEec-cceEEEehhHH-HHHHH-HhcCCeeeeeeeecCC
Confidence            5789999987776656655   678899999999 7777777764 67999999873 33333 4566778999999998


Q ss_pred             CCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107          252 IPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~  323 (331)
                      | ..+++++.++.+..+++.-. .++.++++.|...+++++|++.-+         ++++|+ .||++.|+.
T Consensus       619 G-Dnli~gs~d~k~~WfDldls-skPyk~lr~H~~avr~Va~H~ryP---------Lfas~s-dDgtv~Vfh  678 (733)
T KOG0650|consen  619 G-DNLILGSYDKKMCWFDLDLS-SKPYKTLRLHEKAVRSVAFHKRYP---------LFASGS-DDGTVIVFH  678 (733)
T ss_pred             C-CeEEEecCCCeeEEEEcccC-cchhHHhhhhhhhhhhhhhccccc---------eeeeec-CCCcEEEEe
Confidence            8 56677778888777777655 678889999999999999999994         999999 999999875

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=8.5e-21  Score=145.77  Aligned_cols=291  Identities=14%  Similarity=0.214  Sum_probs=207.1

Q ss_pred             CcceeEeeecCCCCC--cEEEEEeecccCCCCCCCCCcEEEEeccCcc--cceEEeEee-ecCcEeEEEEcCCCCCCCCe
Q 020107           10 GNADAVEFCPQDSYH--HVLAASTYTLQEGDKPSRNGSISLFNVNAEE--KNLELLYRM-DTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~--~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~--~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~   84 (331)
                      .++..++|.++...+  +.+|+.+           ...+.+|+.....  ..++..... |....+.++|+-+-..+..+
T Consensus        39 ~~I~gv~fN~~~~~~e~~vfatvG-----------~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~  107 (385)
T KOG1034|consen   39 KPIFGVAFNSFLGCDEPQVFATVG-----------GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPF  107 (385)
T ss_pred             CccceeeeehhcCCCCCceEEEeC-----------CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCee
Confidence            467888888764332  5777775           7889999987654  122222222 55668889998875433668


Q ss_pred             EEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeee-eeeecccceeEEE
Q 020107           85 LAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVL-QQWKAHEFELWAT  155 (331)
Q Consensus        85 l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~v~~~  155 (331)
                      +|+|+.-|.| +-|+.+.++      |...|+.+.++|+. +++++++.|.+|++|++++.....+ .-+.+|...|.++
T Consensus       108 la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv  187 (385)
T KOG1034|consen  108 LAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV  187 (385)
T ss_pred             EEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence            9999999999 888887665      67889999999976 5688999999999999998754222 2346899999999


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCce-------------------------eeeecccCCCcceEEEEEecCCCCE
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFK-------------------------LAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                      .|++ ++.+|++++.|..|++|++...+..                         +.+.....|...|-|+.|   -+++
T Consensus       188 D~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw---~gd~  263 (385)
T KOG1034|consen  188 DFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW---FGDF  263 (385)
T ss_pred             EEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH---Hhhh
Confidence            9998 8889999999999999999843211                         111112336677777777   4689


Q ss_pred             EEEEecCCeEEEEEecCCCCCcee------------eeeecCCceEEEEECCCCC-CeEEEEEecCcEEEEEEcCcccce
Q 020107          211 LLTGSYDEYLRVWDVRSISKPVNE------------TSVCLGGGVWRIKHHPFIP-GLVLAACMHNGFAVVKVGGEKAEV  277 (331)
Q Consensus       211 l~~~~~d~~i~iwd~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  277 (331)
                      +++=+-++.|..|.....++.+..            .+.-....|+-+.|.-+-- ..++++...+.+.+|++....+..
T Consensus       264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~  343 (385)
T KOG1034|consen  264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK  343 (385)
T ss_pred             eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc
Confidence            999999999999988322221111            1122344566666554322 455556667889999998875544


Q ss_pred             eEEeecC--CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          278 LETYAKH--GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       278 ~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      ..++..+  ...|...+|+.++         .+|+.+. +|++|.-||.-
T Consensus       344 ~ttl~~s~~~~tVRQ~sfS~dg---------s~lv~vc-dd~~Vwrwdrv  383 (385)
T KOG1034|consen  344 CTTLTHSKSGSTVRQTSFSRDG---------SILVLVC-DDGTVWRWDRV  383 (385)
T ss_pred             CceEEeccccceeeeeeecccC---------cEEEEEe-CCCcEEEEEee
Confidence            4444432  4578899999999         6888887 89999999853

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=2.9e-20  Score=162.73  Aligned_cols=286  Identities=17%  Similarity=0.188  Sum_probs=203.0

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee--ecCcEeEEEEcCCCCCCCCeEEE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM--DTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +++..+.++|+.|   .++++.          ..-.|++||.+.+. .+..+..+  ....|+.+.+-....  ..++++
T Consensus      1065 ~~pk~~~~hpf~p---~i~~ad----------~r~~i~vwd~e~~~-~l~~F~n~~~~~t~Vs~l~liNe~D--~aLlLt 1128 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP---QIAAAD----------DRERIRVWDWEKGR-LLNGFDNGAFPDTRVSDLELINEQD--DALLLT 1128 (1387)
T ss_pred             CCCceeeecCCCc---eeEEcC----------CcceEEEEecccCc-eeccccCCCCCCCccceeeeecccc--hhheee
Confidence            3678899999994   666664          57899999998875 33332111  134599999876532  568999


Q ss_pred             EcCCccE-EEecCCCc-cc-----------------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee-c
Q 020107           88 ADADGGL-LRDITGEK-IS-----------------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK-A  147 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~-~~-----------------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~  147 (331)
                      |+.||.| ||+-.... ..                 .+.-.-+.|.....+|++++.-..|+|||......  +..+. +
T Consensus      1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--VADIPYG 1206 (1387)
T ss_pred             eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee--EeecccC
Confidence            9999999 88654332 10                 11113457877777888888889999999987543  33332 3


Q ss_pred             ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcc--eEEEEEecCCCC-EEEEEecCCeEEEEE
Q 020107          148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMG--VCCIASIPSDSN-TLLTGSYDEYLRVWD  224 (331)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~-~l~~~~~d~~i~iwd  224 (331)
                      ....++++.-+...++.+++|..||.|++||.|...........+.|+..  |..+.+.+ .|. .|++|+.||.|++||
T Consensus      1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~-~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR-QGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred             CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec-CCCcceeeeccCCeEEEEe
Confidence            45567888766556899999999999999999986553333333448877  99999988 444 599999999999999


Q ss_pred             ecCC-CCCceeeeeec---CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-------cCCcceeeeee
Q 020107          225 VRSI-SKPVNETSVCL---GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-------KHGSLAYGADW  293 (331)
Q Consensus       225 ~~~~-~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~  293 (331)
                      +|.. ...... ...|   ++..+++..+++  .-++++|+...++||++...   .+..++       ...+.+.+++|
T Consensus      1286 lR~~~~e~~~~-iv~~~~yGs~lTal~VH~h--apiiAsGs~q~ikIy~~~G~---~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1286 LRMSSKETFLT-IVAHWEYGSALTALTVHEH--APIIASGSAQLIKIYSLSGE---QLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred             cccCcccccce-eeeccccCccceeeeeccC--CCeeeecCcceEEEEecChh---hhcccccCcccccCcCCCcceeee
Confidence            9983 222222 1222   335999999998  56677776677888887654   333332       23457899999


Q ss_pred             cCCCCcccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107          294 QRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT  330 (331)
Q Consensus       294 ~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~  330 (331)
                      +|..         -++|.|+ .|.+|.||...+..+.
T Consensus      1360 HP~~---------~llAaG~-~Ds~V~iYs~~k~~~~ 1386 (1387)
T KOG1517|consen 1360 HPHR---------LLLAAGS-ADSTVSIYSCEKPRLT 1386 (1387)
T ss_pred             cchh---------Hhhhhcc-CCceEEEeecCCcCCC
Confidence            9997         4777787 9999999998877653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.87  E-value=6.5e-20  Score=144.24  Aligned_cols=262  Identities=18%  Similarity=0.246  Sum_probs=189.8

Q ss_pred             EeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc
Q 020107           15 VEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG   92 (331)
Q Consensus        15 v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg   92 (331)
                      -.||..+|  .+||+-..       +...|...+.-+....+  .-..+..+|+++|.+++|+|.+   ...||+|++|.
T Consensus        37 S~fcavNP--kfiAvi~e-------asgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~Pfn---D~vIASgSeD~  104 (472)
T KOG0303|consen   37 SSFCAVNP--KFVAVIIE-------ASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFN---DCVIASGSEDT  104 (472)
T ss_pred             ccccccCC--ceEEEEEe-------cCCCcceeecccccccccCCCCCCccCccccccccccCccC---CceeecCCCCc
Confidence            34566666  77777641       11344555555443221  1223457899999999999986   66999999999


Q ss_pred             cE-EEecCCCcc-------------cCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEee
Q 020107           93 GL-LRDITGEKI-------------SSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSF  157 (331)
Q Consensus        93 ~i-iw~~~~~~~-------------~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  157 (331)
                      ++ +|.+.....             |...|--++|+|.. +.|++++.|.+|.+|++.+++.  +..+. |...|+++.|
T Consensus       105 ~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea--li~l~-hpd~i~S~sf  181 (472)
T KOG0303|consen  105 KVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA--LITLD-HPDMVYSMSF  181 (472)
T ss_pred             eEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce--eeecC-CCCeEEEEEe
Confidence            99 999876432             67788899999976 4589999999999999999864  55666 9999999999


Q ss_pred             CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc-ceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCCCce
Q 020107          158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM-GVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISKPVN  233 (331)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~  233 (331)
                      +. ++.++++.+.|..|||||.++++.+..-..   |.+ .-..+.|.. ++.++-||-   .+..+-+||..+...|+.
T Consensus       182 n~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~---heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~  256 (472)
T KOG0303|consen  182 NR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVA---HEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIA  256 (472)
T ss_pred             cc-CCceeeeecccceeEEEcCCCCcEeeeccc---ccCCCcceeEEec-cCceeeeccccccccceeccCcccccCcce
Confidence            96 999999999999999999999987666544   543 234455666 777555553   467899999999888877


Q ss_pred             eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc--ceeEEeecCCcceeeeeecCCC
Q 020107          234 ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA--EVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       234 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                      ......+..|.-=-|.|+..-.++++-+|+.|+.|.+.++.+  ..+.+|. ...+-.++.|-|..
T Consensus       257 ~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  257 LQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKR  321 (472)
T ss_pred             eEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc-cCCccccccccccc
Confidence            655666777777778888745566666888999999988631  1223333 23344556666653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.87  E-value=4.7e-20  Score=157.69  Aligned_cols=248  Identities=17%  Similarity=0.225  Sum_probs=185.7

Q ss_pred             eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc----eEEeEeeecCcEeEEEEcCCCCC
Q 020107            5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN----LELLYRMDTAGIFDIKWSPVGGN   80 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~   80 (331)
                      .+.....+.|+.|+|++|  ++||.|.          .+|.|.+||+......    +......|..+++.+.|..+.. 
T Consensus       238 ~~~~~s~v~~~~f~p~~p--~ll~gG~----------y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~-  304 (555)
T KOG1587|consen  238 VLESPSEVTCLKFCPFDP--NLLAGGC----------YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH-  304 (555)
T ss_pred             EEecCCceeEEEeccCCc--ceEEeec----------cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC-
Confidence            344567889999999998  8999998          5999999999877642    3334455788999999988732 


Q ss_pred             CCCeEEEEcCCccE-EEecCCCcc------------------cCccEEEEEEcCCC-CeEEEEecCCeEEEEEcccccee
Q 020107           81 AGPFLAQADADGGL-LRDITGEKI------------------SSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLE  140 (331)
Q Consensus        81 ~~~~l~~~~~dg~i-iw~~~~~~~------------------~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~  140 (331)
                       ..-+++++.||.+ .|++.....                  ....+++++|.+.. ..+++|+.+|.|.--.....+..
T Consensus       305 -~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~  383 (555)
T KOG1587|consen  305 -NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPA  383 (555)
T ss_pred             -CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccc
Confidence             2348888889999 887654222                  13457889998855 45899999999887444332222


Q ss_pred             e------eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc-CCCceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107          141 V------LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR-ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT  213 (331)
Q Consensus       141 ~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  213 (331)
                      .      ...+..|.++|+++.++|.....+++++ |-+++||... ....+..+..   +...|++++|+|..+..|++
T Consensus       384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~---~~~~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS---SPDYVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             ccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh---ccceeeeeEEcCcCceEEEE
Confidence            2      3345668899999999998888888888 9999999987 4444444444   77789999999988899999


Q ss_pred             EecCCeEEEEEecCC-CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          214 GSYDEYLRVWDVRSI-SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       214 ~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      +..||.|.+||+... ..|+.. ........+.+.|++.+ ..++++...|.+.++++..
T Consensus       460 ~d~~G~l~iWDLl~~~~~Pv~s-~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  460 VDGDGNLDIWDLLQDDEEPVLS-QKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EcCCCceehhhhhccccCCccc-ccccccccceeecCCCC-cEEEEecCCCcEEEEEcCc
Confidence            999999999999764 234444 23345667778888875 5566666667788888854

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=2.8e-20  Score=155.70  Aligned_cols=272  Identities=12%  Similarity=0.126  Sum_probs=208.9

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+..|+|-|++   ..|+.+.           +..+.+||..++.  +-..+++|.+.|++++|+.+    |+.+|+|+.
T Consensus        14 ci~d~afkPDG---sqL~lAA-----------g~rlliyD~ndG~--llqtLKgHKDtVycVAys~d----GkrFASG~a   73 (1081)
T KOG1538|consen   14 CINDIAFKPDG---TQLILAA-----------GSRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKD----GKRFASGSA   73 (1081)
T ss_pred             chheeEECCCC---ceEEEec-----------CCEEEEEeCCCcc--cccccccccceEEEEEEccC----CceeccCCC
Confidence            45566776666   5666664           7799999999886  44455999999999999999    999999999


Q ss_pred             CccE-EEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE
Q 020107           91 DGGL-LRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV  165 (331)
Q Consensus        91 dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (331)
                      |..+ +|+..-...    |...|.|+.|+|-...|++++- ...-+|..+....   ...+ ....+.+++|.. ++.++
T Consensus        74 DK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V---~K~k-ss~R~~~CsWtn-DGqyl  147 (1081)
T KOG1538|consen   74 DKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV---SKHK-SSSRIICCSWTN-DGQYL  147 (1081)
T ss_pred             ceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH---Hhhh-hheeEEEeeecC-CCcEE
Confidence            9999 998765443    7899999999999888888876 3456798776432   2222 345788999995 99999


Q ss_pred             EEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC----CEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107          166 YTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS----NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG  241 (331)
Q Consensus       166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  241 (331)
                      +.|-.+|+|.+-+-. ++....+..+.+...+|.+++|+|..+    ..+++.....++.+|.+... ..-..  ...+-
T Consensus       148 alG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~--r~L~F  223 (1081)
T KOG1538|consen  148 ALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKD--RALNF  223 (1081)
T ss_pred             EEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eeccc--ccCCC
Confidence            999999999988654 333444554455788999999999432    57888888888888888642 21112  34445


Q ss_pred             ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107          242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI  321 (331)
Q Consensus       242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i  321 (331)
                      ...++.+.|+| .+++.+|+++.+.++.-   .+-.+.++......|+.++..|++         +.++.|. .||+|--
T Consensus       224 dP~CisYf~NG-Ey~LiGGsdk~L~~fTR---~GvrLGTvg~~D~WIWtV~~~PNs---------Q~v~~GC-qDGTiAC  289 (1081)
T KOG1538|consen  224 DPCCISYFTNG-EYILLGGSDKQLSLFTR---DGVRLGTVGEQDSWIWTVQAKPNS---------QYVVVGC-QDGTIAC  289 (1081)
T ss_pred             CchhheeccCC-cEEEEccCCCceEEEee---cCeEEeeccccceeEEEEEEccCC---------ceEEEEE-ccCeeeh
Confidence            56789999998 78888888887655543   367788888888899999999999         6888888 9999998


Q ss_pred             EcCCC
Q 020107          322 WMPES  326 (331)
Q Consensus       322 W~~~~  326 (331)
                      |++..
T Consensus       290 yNl~f  294 (1081)
T KOG1538|consen  290 YNLIF  294 (1081)
T ss_pred             hhhHH
Confidence            88743

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.87  E-value=2.7e-20  Score=146.33  Aligned_cols=206  Identities=17%  Similarity=0.192  Sum_probs=157.7

Q ss_pred             cCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccc-----eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107          104 SSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQ-----LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW  177 (331)
Q Consensus       104 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (331)
                      |..+|..++|+|.. ..||+|++|.+|.||++..+.     .+++..+.+|...|.-++|+|...+.|++++.|.+|.+|
T Consensus        80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW  159 (472)
T KOG0303|consen   80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW  159 (472)
T ss_pred             ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence            78999999999955 569999999999999987632     245778899999999999999888999999999999999


Q ss_pred             EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC-ceEEEEECCCCCCeE
Q 020107          178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG-GVWRIKHHPFIPGLV  256 (331)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  256 (331)
                      ++.+++....+.    |.+.|.++.|+. +|.+|++.+.|..|||||.+++ ..+.+. ..|.+ .-..+.|-.++  .+
T Consensus       160 nv~tgeali~l~----hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~-~~v~e~-~~heG~k~~Raifl~~g--~i  230 (472)
T KOG0303|consen  160 NVGTGEALITLD----HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG-TVVSEG-VAHEGAKPARAIFLASG--KI  230 (472)
T ss_pred             eccCCceeeecC----CCCeEEEEEecc-CCceeeeecccceeEEEcCCCC-cEeeec-ccccCCCcceeEEeccC--ce
Confidence            999997655543    999999999999 9999999999999999999996 555552 56654 45677888884  47


Q ss_pred             EEEEec----CcEEEEEEcCcc-cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          257 LAACMH----NGFAVVKVGGEK-AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       257 ~~~~~~----~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +++|..    ..+.+|+..+.+ +-...++.. .+.|.-=-|.++.         .++.-+|..|+.||.|.+.+..
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt---------~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDT---------SIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCC---------CEEEEEecCCcceEEEEecCCC
Confidence            777643    334455544432 222333433 3334434456665         5777776689999999987654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.6e-20  Score=142.50  Aligned_cols=241  Identities=12%  Similarity=0.112  Sum_probs=176.4

Q ss_pred             EeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceee
Q 020107           69 IFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEV  141 (331)
Q Consensus        69 v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  141 (331)
                      -.++.|++.    |.+||+|..||.+ |||..+...      |-.+|.+++|+++|+.|++++.|..|.+||+..+.+  
T Consensus        26 a~~~~Fs~~----G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~--   99 (405)
T KOG1273|consen   26 AECCQFSRW----GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP--   99 (405)
T ss_pred             cceEEeccC----cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc--
Confidence            789999999    9999999999999 999988654      788999999999999999999999999999999864  


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc-c-CCCcceEEEEEecCCCCEEEEEecCCe
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS-K-IHKMGVCCIASIPSDSNTLLTGSYDEY  219 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~l~~~~~d~~  219 (331)
                      ++.+. -..+|+.+.|+|.+.+.+++.-.+..-.+-++..+. ...+..- . .-.....+..|.+ .|+++++|...|.
T Consensus       100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGk  176 (405)
T KOG1273|consen  100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGK  176 (405)
T ss_pred             eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccC-CCCEEEEecCcce
Confidence            66666 467999999999877777776666555666665432 1222210 0 0111223345788 9999999999999


Q ss_pred             EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-----cc--eeEEeec--CCcceee
Q 020107          220 LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-----AE--VLETYAK--HGSLAYG  290 (331)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~--h~~~v~~  290 (331)
                      +.++|..+. +.+..........|.++.++..+ ..++..++|..|+.|++.+..     ++  +.+.+..  ....=..
T Consensus       177 llv~~a~t~-e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  177 LLVYDAETL-ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             EEEEecchh-eeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            999999986 55554223334689999999887 788888899989999887421     11  1111110  1112235


Q ss_pred             eeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +.|+.++         .+++.++..-..++||.-..|.+
T Consensus       255 ccfs~dg---------eYv~a~s~~aHaLYIWE~~~GsL  284 (405)
T KOG1273|consen  255 CCFSGDG---------EYVCAGSARAHALYIWEKSIGSL  284 (405)
T ss_pred             eeecCCc---------cEEEeccccceeEEEEecCCcce
Confidence            6777777         46666654678999999887755

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.4e-20  Score=144.01  Aligned_cols=198  Identities=22%  Similarity=0.308  Sum_probs=161.5

Q ss_pred             CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC-CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC-
Q 020107          118 TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH-QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK-  195 (331)
Q Consensus       118 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-  195 (331)
                      ..+|++...|+|++||..+++.  +..++++...+..+.|... .++.+.+|+.||+|++||+|.......+.... +. 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~--l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~-~~~  117 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQL--LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ-QSG  117 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhh--hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC-CCC
Confidence            4689999999999999998754  8889999988999998753 57899999999999999999887766666522 43 


Q ss_pred             cceEEEEEecCCCCEEEEEec----CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107          196 MGVCCIASIPSDSNTLLTGSY----DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG  271 (331)
Q Consensus       196 ~~v~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (331)
                      .+..+++.+- .++++++|.+    |-.|.+||+|..++++..+...|...|++++|+|..+.++++++.|+-+.++++.
T Consensus       118 ~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  118 TPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             CcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence            5677787765 6788888863    6789999999987878887889999999999999999999999999988899986


Q ss_pred             Ccc-cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          272 GEK-AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       272 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ... ...+...-.|...|-.+.|..++-        +.|..-+ ...+..+|+++.+.
T Consensus       197 ~d~EeDaL~~viN~~sSI~~igw~~~~y--------krI~clT-H~Etf~~~ele~~~  245 (376)
T KOG1188|consen  197 KDNEEDALLHVINHGSSIHLIGWLSKKY--------KRIMCLT-HMETFAIYELEDGS  245 (376)
T ss_pred             CCcchhhHHHhhcccceeeeeeeecCCc--------ceEEEEE-ccCceeEEEccCCC
Confidence            642 222333335778899999998875        5677787 89999999998763

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=7.3e-20  Score=144.10  Aligned_cols=247  Identities=15%  Similarity=0.051  Sum_probs=181.8

Q ss_pred             EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC-------------CcccCccEEEEEEcCCCCeEEEEecCC
Q 020107           62 YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG-------------EKISSSMCLCLEWNPSATSITVGLSDG  127 (331)
Q Consensus        62 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~dg  127 (331)
                      ..+|.+.|+++.|+.+    +++|++|+.|... +|++..             +..|.+.|.|++|......+++|..++
T Consensus        52 ~~~H~GCiNAlqFS~N----~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   52 VREHTGCINALQFSHN----DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhccccceeeeccC----CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            4679999999999999    9999999999999 998753             223678999999999999999999999


Q ss_pred             eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC
Q 020107          128 SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD  207 (331)
Q Consensus       128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  207 (331)
                      +|...|+++.+...+..-....+.|+.+..+| ..+.|++.+.++.|.+||.+...................++.|+|..
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            99999999875422222223345899999999 57899999999999999999766322222223356678899999988


Q ss_pred             CCEEEEEecCCeEEEEEecCCCCCceeeee--ec---CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107          208 SNTLLTGSYDEYLRVWDVRSISKPVNETSV--CL---GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA  282 (331)
Q Consensus       208 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (331)
                      +.+|++.+..+-+.+||++....++.+...  ..   ...-..+.|+|.| ..+++.-....-.++++-.. .-.+..+.
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~-R~~V~k~D  284 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQ-RCFVLKSD  284 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeecc-cceeEecc
Confidence            999999999999999999998777665211  11   1223678999998 55555543333345666553 11222222


Q ss_pred             c------CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          283 K------HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       283 ~------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      .      ....+.++.|..+.          .+++|+ .+-.|++|.+..
T Consensus       285 ~N~~GY~N~~T~KS~~F~~D~----------~v~tGS-D~~~i~~WklP~  323 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFIDDY----------TVATGS-DHWGIHIWKLPR  323 (609)
T ss_pred             CCCCcceeeeeeeeeeeecce----------eeeccC-cccceEEEecCC
Confidence            1      11245677887774          699999 999999999853

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.86  E-value=2.2e-20  Score=155.41  Aligned_cols=230  Identities=18%  Similarity=0.203  Sum_probs=166.8

Q ss_pred             CeEEE--EcCCccE-EEecCCCc-c---------cCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccc-----eeeee
Q 020107           83 PFLAQ--ADADGGL-LRDITGEK-I---------SSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQ-----LEVLQ  143 (331)
Q Consensus        83 ~~l~~--~~~dg~i-iw~~~~~~-~---------~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~  143 (331)
                      ..+|+  ++.-|.| |+++.... .         ....|+.+.|+| |...|++++.||.|++|.+..+.     ..+..
T Consensus       592 ~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~  671 (1012)
T KOG1445|consen  592 KRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEK  671 (1012)
T ss_pred             ceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcce
Confidence            34444  4556777 88887532 2         356789999999 56779999999999999987642     34566


Q ss_pred             eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEE
Q 020107          144 QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVW  223 (331)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw  223 (331)
                      .+..|...|+++.|+|-..+.|++++.|-+|++||+++.+....+..   |++.|..++|+| +|+.+++.+.||+|++|
T Consensus       672 ~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g---HtdqIf~~AWSp-dGr~~AtVcKDg~~rVy  747 (1012)
T KOG1445|consen  672 ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG---HTDQIFGIAWSP-DGRRIATVCKDGTLRVY  747 (1012)
T ss_pred             eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc---CcCceeEEEECC-CCcceeeeecCceEEEe
Confidence            78899999999999998889999999999999999999987777777   999999999999 99999999999999999


Q ss_pred             EecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc----EEEEEEcCcccceeEEeecCCcceeeeeecCCCCc
Q 020107          224 DVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG----FAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSS  299 (331)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  299 (331)
                      ..++.++++.+-.......--.|.|..++ .+++++|.+..    +.+|+........+.+        ..++.+|.---
T Consensus       748 ~Prs~e~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t--------~~lDvaps~Lv  818 (1012)
T KOG1445|consen  748 EPRSREQPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLDLRPLYT--------QVLDVAPSPLV  818 (1012)
T ss_pred             CCCCCCCccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhhhhhhhccCCccee--------eeecccCcccc
Confidence            99998888876333344555678888887 67777776543    2223322221222222        22222222111


Q ss_pred             ccccc-cCcEEEEeecCCCeEEEEcCCC
Q 020107          300 LEGKR-KNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       300 ~~~~~-~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      .+.++ .+-++++|- .|..|.+|.+-.
T Consensus       819 P~YD~Ds~~lfltGK-GD~~v~~yEv~~  845 (1012)
T KOG1445|consen  819 PHYDYDSNVLFLTGK-GDRFVNMYEVIY  845 (1012)
T ss_pred             ccccCCCceEEEecC-CCceEEEEEecC
Confidence            11111 225677777 899999998743

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.9e-18  Score=148.86  Aligned_cols=286  Identities=15%  Similarity=0.190  Sum_probs=210.9

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccC--cccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNA--EEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ...|++++|..   +++|+|.          .||.|.+|.--.  ....-..++.-|...|+++.|+++    |.+|++|
T Consensus       207 ~~t~~~~spn~---~~~Aa~d----------~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~----G~~LlSG  269 (792)
T KOG1963|consen  207 NITCVALSPNE---RYLAAGD----------SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD----GAYLLSG  269 (792)
T ss_pred             cceeEEecccc---ceEEEec----------cCCcEEEEeccccccccccceEEEecccccceeEEecC----CceEeec
Confidence            46788888887   8999997          799999997544  222344556789999999999999    9999999


Q ss_pred             cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee-eeeeee--------cccceeE
Q 020107           89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE-VLQQWK--------AHEFELW  153 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~--------~~~~~v~  153 (331)
                      +..|.+ +|.+.+++.     -.++|..+.++||+.+.++...|..|.+....+...+ .+..+.        ....-.+
T Consensus       270 G~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t  349 (792)
T KOG1963|consen  270 GREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT  349 (792)
T ss_pred             ccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence            999999 999998775     2788999999999999999999999999887543210 011111        1244567


Q ss_pred             EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc--------CCCcceEEEEEecCCCCEEEEEe--------cC
Q 020107          154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK--------IHKMGVCCIASIPSDSNTLLTGS--------YD  217 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~--------~d  217 (331)
                      .++++| ..+.++-.+..|.|.+||+-+.+.+..+....        .+...+++++.+. .+.+++|.-        .|
T Consensus       350 ~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~  427 (792)
T KOG1963|consen  350 GVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFD  427 (792)
T ss_pred             eEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccC
Confidence            788998 66788888999999999999877665544311        1344578888888 699999863        23


Q ss_pred             --CeEEEEEecCCCC---CceeeeeecCCceEEEEECCCCCC-eEEEEEecCcEEEEEEcCcc--------cceeEEeec
Q 020107          218 --EYLRVWDVRSISK---PVNETSVCLGGGVWRIKHHPFIPG-LVLAACMHNGFAVVKVGGEK--------AEVLETYAK  283 (331)
Q Consensus       218 --~~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  283 (331)
                        -.+++|-.....+   ....+..+|+..+...++.+..+. ..++++.++.+++|-+.+..        ..+...-.-
T Consensus       428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy  507 (792)
T KOG1963|consen  428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY  507 (792)
T ss_pred             ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence              3578897765322   222334578777666666554333 78888899999999994432        222222224


Q ss_pred             CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      |..++++++|+.||          -++++| .|++|.+||..+
T Consensus       508 ~k~~i~a~~fs~dG----------slla~s-~~~~Itiwd~~~  539 (792)
T KOG1963|consen  508 HKTPITALCFSQDG----------SLLAVS-FDDTITIWDYDT  539 (792)
T ss_pred             ccCcccchhhcCCC----------cEEEEe-cCCEEEEecCCC
Confidence            78899999999998          466666 799999999987

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.85  E-value=6.4e-19  Score=135.15  Aligned_cols=233  Identities=14%  Similarity=0.139  Sum_probs=171.1

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc-cceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE-KNLELLYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      +-.+++|-+|.++.   ..+|++.          .+..|.||.....+ ......+..|...|+.+.|+|.    ...|+
T Consensus         9 ~~~pitchAwn~dr---t~iAv~~----------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~----snrIv   71 (361)
T KOG1523|consen    9 LLEPITCHAWNSDR---TQIAVSP----------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK----SNRIV   71 (361)
T ss_pred             ccCceeeeeecCCC---ceEEecc----------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCC----CCcee
Confidence            45678888887776   8999997          68899999988776 3445556789999999999999    88999


Q ss_pred             EEcCCccE-EEecC-CCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce--eeeeeeecccceeEE
Q 020107           87 QADADGGL-LRDIT-GEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL--EVLQQWKAHEFELWA  154 (331)
Q Consensus        87 ~~~~dg~i-iw~~~-~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~  154 (331)
                      +++.|... +|... .+.-        ++..++++.|+|.++.+++|+.-..|.||-++...-  .....-+.+...|++
T Consensus        72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s  151 (361)
T KOG1523|consen   72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS  151 (361)
T ss_pred             EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence            99999888 99883 3322        578889999999999999999999999998876321  111122456778999


Q ss_pred             EeeCCCCCcEEEEEcCCCeEEEEEcc-----CCCcee----------eeecccCCCcceEEEEEecCCCCEEEEEecCCe
Q 020107          155 TSFDVHQPHMVYTGSDDCKFSGWDIR-----ESPFKL----------AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY  219 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  219 (331)
                      ++|+| ++-++++|+.|+.++++..-     ......          .+.......+.+..+.|+| +++.|+-.+.|.+
T Consensus       152 ldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~  229 (361)
T KOG1523|consen  152 LDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDST  229 (361)
T ss_pred             eeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCc
Confidence            99999 77899999999999998652     111000          0111112577899999999 9999999999999


Q ss_pred             EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec
Q 020107          220 LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH  262 (331)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  262 (331)
                      +.+-|.....+.+......+ -+..++.|-.+  ..+++++.+
T Consensus       230 v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise--~~vv~ag~~  269 (361)
T KOG1523|consen  230 VSFVDAAGPSERVQSVATAQ-LPLLSVSWISE--NSVVAAGYD  269 (361)
T ss_pred             eEEeecCCCchhccchhhcc-CCceeeEeecC--CceeecCCC
Confidence            99999887643333212222 56666666554  344444433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=3.3e-17  Score=141.44  Aligned_cols=283  Identities=20%  Similarity=0.343  Sum_probs=202.9

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEE-cCCCCCCCC-eE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKW-SPVGGNAGP-FL   85 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~-~l   85 (331)
                      ....+.++.+.+.+   ..++.++          .++.+.+|+..........+...+...+..+.+ +++    +. .+
T Consensus        64 ~~~~i~~~~~~~~~---~~~~~~~----------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  126 (466)
T COG2319          64 HEDSITSIAFSPDG---ELLLSGS----------SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD----GNSIL  126 (466)
T ss_pred             ccceEEEEEECCCC---cEEEEec----------CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCC----cceEE
Confidence            34455566666655   6777776          699999999988742233332222236777777 676    55 45


Q ss_pred             EEEcC-CccE-EEecCC-C------cccCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           86 AQADA-DGGL-LRDITG-E------KISSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        86 ~~~~~-dg~i-iw~~~~-~------~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      +..+. |+.+ +|+... .      ..|...+..++|+|+++.+++++. ++.+++|++..+.  .+..+..|...+.++
T Consensus       127 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~  204 (466)
T COG2319         127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSL  204 (466)
T ss_pred             eccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEE
Confidence            55444 8888 999886 2      236788999999999998888886 9999999998753  366777799999999


Q ss_pred             eeCCCCCc-EEEEEcCCCeEEEEEccCCCcee-eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCce
Q 020107          156 SFDVHQPH-MVYTGSDDCKFSGWDIRESPFKL-AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVN  233 (331)
Q Consensus       156 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  233 (331)
                      +|+| ++. .+++++.|+.+++||.+.+.... .+..   |.... ...|+| ++.++++++.|+.+++||++.....+.
T Consensus       205 ~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~  278 (466)
T COG2319         205 AFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG---HSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLR  278 (466)
T ss_pred             EEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCC---CCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEE
Confidence            9998 555 55665999999999988665554 3444   66665 338999 778889999999999999998644234


Q ss_pred             eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe--ecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107          234 ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY--AKHGSLAYGADWQRGRSSLEGKRKNSLVAT  311 (331)
Q Consensus       234 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  311 (331)
                      .. ..|...+.++.|+|++ ..+++++.++.+.+|+....  ......  ..|...+..+.|.+++.        .++.+
T Consensus       279 ~~-~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~  346 (466)
T COG2319         279 TL-SGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETG--KLLSSLTLKGHEGPVSSLSFSPDGS--------LLVSG  346 (466)
T ss_pred             EE-ecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCC--ceEEEeeecccCCceEEEEECCCCC--------EEEEe
Confidence            32 5778999999999965 56666666655677755543  333333  37777899999933312        34444


Q ss_pred             eecCCCeEEEEcCCCcc
Q 020107          312 CSFYDRLLRIWMPESDC  328 (331)
Q Consensus       312 ~~~~d~~i~iW~~~~~~  328 (331)
                      +. .|+.+++|++....
T Consensus       347 ~~-~d~~~~~~~~~~~~  362 (466)
T COG2319         347 GS-DDGTIRLWDLRTGK  362 (466)
T ss_pred             ec-CCCcEEeeecCCCc
Confidence            46 78999999987653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=3.6e-20  Score=151.82  Aligned_cols=250  Identities=16%  Similarity=0.203  Sum_probs=182.2

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------------ccCccEEEEEEcCCCCeEEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------------ISSSMCLCLEWNPSATSITV  122 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------------~~~~~v~~~~~~~~~~~l~~  122 (331)
                      ++.....|...|++++|.|.    ...|++++.||.+ +|+++...              .|.++|.|+...+++..+++
T Consensus       286 ik~tl~s~~d~ir~l~~~~s----ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys  361 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPS----EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS  361 (577)
T ss_pred             eeeeeecchhhhhhhhcCCC----CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe
Confidence            44456778899999999999    8899999999999 99994321              27899999999999999999


Q ss_pred             EecCCeEEEEEccccc--------eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC
Q 020107          123 GLSDGSVSIVSVVESQ--------LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH  194 (331)
Q Consensus       123 ~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  194 (331)
                      |+-||+|+.|++....        ......+.+|...++.+++++ ....|++++.||++++|+...... ..+...+ .
T Consensus       362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~-e  438 (577)
T KOG0642|consen  362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPK-E  438 (577)
T ss_pred             eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCcc-c
Confidence            9999999999654211        122346789999999999997 778899999999999999987654 3344422 2


Q ss_pred             CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee-----cCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107          195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC-----LGGGVWRIKHHPFIPGLVLAACMHNGFAVVK  269 (331)
Q Consensus       195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (331)
                      .+...++++-.......++...-+.--++++.........-...     -...+..+.++|.. .+.+++..+..+++++
T Consensus       439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~d  517 (577)
T KOG0642|consen  439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFD  517 (577)
T ss_pred             cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceeccc
Confidence            33445666654122233333222333333333321111110011     11347788999987 7777887888877777


Q ss_pred             EcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          270 VGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       270 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ...  +..+.....|...++++++.|+++         +|++++ .|+.+++|++...
T Consensus       518 n~~--~~~l~s~~a~~~svtslai~~ng~---------~l~s~s-~d~sv~l~kld~k  563 (577)
T KOG0642|consen  518 NKT--GKILHSMVAHKDSVTSLAIDPNGP---------YLMSGS-HDGSVRLWKLDVK  563 (577)
T ss_pred             ccc--cccchheeeccceecceeecCCCc---------eEEeec-CCceeehhhccch
Confidence            666  688888999999999999999994         999999 9999999998654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=6.6e-19  Score=143.92  Aligned_cols=202  Identities=13%  Similarity=0.152  Sum_probs=150.5

Q ss_pred             CCeEEEEcCCccE-EEecCC-----CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           82 GPFLAQADADGGL-LRDITG-----EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        82 ~~~l~~~~~dg~i-iw~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      .+.|+.++.||.+ +-+-..     -..|...+.+-.|+|+|.-|+++++||.|++|.-.. -+  ..++.....+|+|+
T Consensus        75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-ML--RStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-ML--RSTVVQNEESIRCA  151 (737)
T ss_pred             cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hH--HHHHhhcCceeEEE
Confidence            5689999999998 443322     234788899999999999999999999999999653 22  22333456789999


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  235 (331)
                      +|.|+..+.+++.+  +.+.|=-+.....+..++.   |.+-|.++.|+| ..+++++|++|-..++||-..  +++.. 
T Consensus       152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkA---HDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G--~~Lf~-  222 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRA---HDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQG--ANLFT-  222 (737)
T ss_pred             EECCCCCceEEecC--CeEEEeecccccceeEEec---cCcEEEEeecCc-cccceeecCCceeEEeecccC--ccccc-
Confidence            99996666666544  5666666665554555665   999999999999 899999999999999999875  34433 


Q ss_pred             eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107          236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY  315 (331)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~  315 (331)
                      ...|..+|++++|+|+  ..+ +.++.+..+   +.          +...+.|..++||+||         ..++.|. .
T Consensus       223 S~~~ey~ITSva~npd--~~~-~v~S~nt~R---~~----------~p~~GSifnlsWS~DG---------TQ~a~gt-~  276 (737)
T KOG1524|consen  223 SAAEEYAITSVAFNPE--KDY-LLWSYNTAR---FS----------SPRVGSIFNLSWSADG---------TQATCGT-S  276 (737)
T ss_pred             CChhccceeeeeeccc--cce-eeeeeeeee---ec----------CCCccceEEEEEcCCC---------ceeeccc-c
Confidence            3789999999999998  444 334444432   22          2356789999999999         5666666 6


Q ss_pred             CCeEEE
Q 020107          316 DRLLRI  321 (331)
Q Consensus       316 d~~i~i  321 (331)
                      .|.+.+
T Consensus       277 ~G~v~~  282 (737)
T KOG1524|consen  277 TGQLIV  282 (737)
T ss_pred             CceEEE
Confidence            676644

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.83  E-value=6.8e-17  Score=134.73  Aligned_cols=263  Identities=10%  Similarity=0.053  Sum_probs=167.3

Q ss_pred             CCCcEEEEeccCcccceEEeEee-ecCcEeEEEEcCCCCCCCCeEEEEc-CCccE-EEecCC-Ccc-------cCccEEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRM-DTAGIFDIKWSPVGGNAGPFLAQAD-ADGGL-LRDITG-EKI-------SSSMCLC  110 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i-iw~~~~-~~~-------~~~~v~~  110 (331)
                      .++.|++|++.+.. .+..+... +.+....++++|+    +++|++++ .++.+ .|++.. +..       .......
T Consensus        10 ~~~~I~~~~~~~~g-~l~~~~~~~~~~~~~~l~~spd----~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028         10 ESQQIHVWNLNHEG-ALTLLQVVDVPGQVQPMVISPD----KRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             CCCCEEEEEECCCC-ceeeeeEEecCCCCccEEECCC----CCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            58999999996432 23322222 3456788999999    88887664 45666 787752 221       1234568


Q ss_pred             EEEcCCCCeEEEEec-CCeEEEEEccccc-e-eeeeeeecccceeEEEeeCCCCCcEE-EEEcCCCeEEEEEccCCCcee
Q 020107          111 LEWNPSATSITVGLS-DGSVSIVSVVESQ-L-EVLQQWKAHEFELWATSFDVHQPHMV-YTGSDDCKFSGWDIRESPFKL  186 (331)
Q Consensus       111 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~  186 (331)
                      +.|+|+++++++++. ++.|.+|++++.. . ..+..+. +......++++| +++++ ++...++.|.+||+.+.....
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCccc
Confidence            999999999888775 8999999997422 1 1122222 233467788999 55555 566677999999998633221


Q ss_pred             -----eeecccCCCcceEEEEEecCCCCEEEEEec-CCeEEEEEecCCCCCcee--eeeec------CCceEEEEECCCC
Q 020107          187 -----AFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DEYLRVWDVRSISKPVNE--TSVCL------GGGVWRIKHHPFI  252 (331)
Q Consensus       187 -----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~--~~~~~------~~~v~~~~~~~~~  252 (331)
                           .... + .......+.|+| +++++++... ++.|.+||++.....+..  ....+      ......+.++|++
T Consensus       163 ~~~~~~~~~-~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        163 AQEPAEVTT-V-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ccCCCceec-C-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence                 1111 1 234567899999 8888888776 899999999842111111  01111      1123468899997


Q ss_pred             CCeEEEEE-ecCcEEEEEEcCccc--ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          253 PGLVLAAC-MHNGFAVVKVGGEKA--EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       253 ~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                       ..++++. .++.+.+|++.....  +.+..... ......+.++|++         ++|+++...+++|.+|+++
T Consensus       240 -~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg---------~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        240 -RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSG---------KYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             -CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCC---------CEEEEEEccCCcEEEEEEc
Confidence             4455553 467788898865422  22222222 1245578999999         4666555259999999874

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=8.5e-19  Score=131.04  Aligned_cols=245  Identities=13%  Similarity=0.144  Sum_probs=180.1

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSI  131 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i  131 (331)
                      ..+++|.+.|+++.|..+    + +|.+|..-|.+ +|.+++...       +...|+.+.--|+ ..+.+-+.|+.+.+
T Consensus         8 fvLRp~~~~v~s~~fqa~----~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQAN----E-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             eEeccccchheehhhccc----h-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence            344689999999999876    3 59999999999 999988653       4567777777776 56788888999999


Q ss_pred             EEccccceeeeeeee---------------------------------------------------cccceeEEEeeCCC
Q 020107          132 VSVVESQLEVLQQWK---------------------------------------------------AHEFELWATSFDVH  160 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~---------------------------------------------------~~~~~v~~~~~~~~  160 (331)
                      |++..+....+..+.                                                   +..+.+++..+.-.
T Consensus        82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~  161 (323)
T KOG0322|consen   82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA  161 (323)
T ss_pred             EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence            998752211111100                                                   01234455554322


Q ss_pred             C--CcEEEEEcCCCeEEEEEccCCCceeeee-------cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC--C
Q 020107          161 Q--PHMVYTGSDDCKFSGWDIRESPFKLAFQ-------NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI--S  229 (331)
Q Consensus       161 ~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~  229 (331)
                      .  .-++++|.++|.+.+||+.++..+..+.       ....|..+|.++.+.+ .-+.=++|+.+..+..|.+...  .
T Consensus       162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gs  240 (323)
T KOG0322|consen  162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGS  240 (323)
T ss_pred             ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCc
Confidence            2  2357788899999999999874322211       1234899999999988 5556678888888999988653  2


Q ss_pred             CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEE
Q 020107          230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLV  309 (331)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  309 (331)
                      .++.....-..-.|..+..-||+ ..++++|-|+++++|....  .+++..++.|...|.+++|+|+.         .+|
T Consensus       241 lq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrt--l~pLAVLkyHsagvn~vAfspd~---------~lm  308 (323)
T KOG0322|consen  241 LQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRT--LNPLAVLKYHSAGVNAVAFSPDC---------ELM  308 (323)
T ss_pred             ccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEecc--CCchhhhhhhhcceeEEEeCCCC---------chh
Confidence            22222223334568889999997 7888888999999999988  58888899999999999999997         599


Q ss_pred             EEeecCCCeEEEEcC
Q 020107          310 ATCSFYDRLLRIWMP  324 (331)
Q Consensus       310 ~s~~~~d~~i~iW~~  324 (331)
                      |++| .|++|.+|++
T Consensus       309 Aaas-kD~rISLWkL  322 (323)
T KOG0322|consen  309 AAAS-KDARISLWKL  322 (323)
T ss_pred             hhcc-CCceEEeeec
Confidence            9999 9999999986

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.82  E-value=1.2e-18  Score=133.59  Aligned_cols=209  Identities=15%  Similarity=0.156  Sum_probs=166.4

Q ss_pred             CccEEEEEEcCCCCeEEEEecCCeEEEEEccccc-eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC-C
Q 020107          105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ-LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE-S  182 (331)
Q Consensus       105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~  182 (331)
                      ..+|+|.+|++|...+|++.....|.||.....+ +++..++..|...|+.++|+| ..+.|++|+.|..-++|.... +
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCC
Confidence            4789999999999999999999999999998877 788899999999999999999 778999999999999999943 3


Q ss_pred             CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC--ceeeeeecCCceEEEEECCCCCCeEEEEE
Q 020107          183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP--VNETSVCLGGGVWRIKHHPFIPGLVLAAC  260 (331)
Q Consensus       183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  260 (331)
                      +-.+.+.. ..+....+++.|+| .++.||+|+....|.+|-++..+.-  -..+..++.+.|+++.|+|++ -++++++
T Consensus        89 ~WkptlvL-lRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLlaaGs  165 (361)
T KOG1523|consen   89 TWKPTLVL-LRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLLAAGS  165 (361)
T ss_pred             eeccceeE-EEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ceecccc
Confidence            33333333 22789999999999 9999999999999999988864221  011125778889999999994 4445555


Q ss_pred             ecCcEEEEEEcCcc----------------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          261 MHNGFAVVKVGGEK----------------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       261 ~~~~~~~~~~~~~~----------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                      .|...+++...-..                ++++.++....+.|.++.|+|++         ..|+-.+ .|..+.+=|.
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG---------~~lawv~-Hds~v~~~da  235 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG---------NRLAWVG-HDSTVSFVDA  235 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC---------CEeeEec-CCCceEEeec
Confidence            67777776643211                44555565567789999999999         6999999 9999998887


Q ss_pred             CCc
Q 020107          325 ESD  327 (331)
Q Consensus       325 ~~~  327 (331)
                      ...
T Consensus       236 ~~p  238 (361)
T KOG1523|consen  236 AGP  238 (361)
T ss_pred             CCC
Confidence            654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=8.1e-18  Score=124.49  Aligned_cols=227  Identities=14%  Similarity=0.132  Sum_probs=160.2

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC----------------CcccCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG----------------EKISSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~----------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      .|.+-+|+|.    +++|++|+.+|.+ +..+..                .+.|..+++.++|.  ..+|++++ ||.|+
T Consensus        12 tvf~qa~sp~----~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~   84 (325)
T KOG0649|consen   12 TVFAQAISPS----KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVY   84 (325)
T ss_pred             HHHHHhhCCc----ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEE
Confidence            4677789999    9999999999999 555432                13378899999997  34566655 49999


Q ss_pred             EEEccccce----eeeee--eecc-----cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceE
Q 020107          131 IVSVVESQL----EVLQQ--WKAH-----EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC  199 (331)
Q Consensus       131 i~d~~~~~~----~~~~~--~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  199 (331)
                      -|.-+....    +++-.  ...|     -..|+++...|.. +-++.++.|+.++-||+++++....++.   |++.|.
T Consensus        85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rG---HtDYvH  160 (325)
T KOG0649|consen   85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRG---HTDYVH  160 (325)
T ss_pred             EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcC---Ccceee
Confidence            998765211    00000  1111     2468899999955 4455555799999999999998888877   999999


Q ss_pred             EEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee--------eeec-CCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          200 CIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET--------SVCL-GGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       200 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                      ++.--. ....+++|++||++|+||.++.+ .+..+        +.+| ...|.+++-+.+    .+.+|....+.+|.+
T Consensus       161 ~vv~R~-~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp~~g~wigala~~ed----WlvCGgGp~lslwhL  234 (325)
T KOG0649|consen  161 SVVGRN-ANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIGALAVNED----WLVCGGGPKLSLWHL  234 (325)
T ss_pred             eeeecc-cCcceeecCCCccEEEEeccccc-eeEEeccccChhhcCcccCceeEEEeccCc----eEEecCCCceeEEec
Confidence            999855 56689999999999999999963 33221        1222 234667776654    445555566789999


Q ss_pred             cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +..+...+..+.+|   |..+.|..+           .++++| ..+.|.-|.+..
T Consensus       235 rsse~t~vfpipa~---v~~v~F~~d-----------~vl~~G-~g~~v~~~~l~G  275 (325)
T KOG0649|consen  235 RSSESTCVFPIPAR---VHLVDFVDD-----------CVLIGG-EGNHVQSYTLNG  275 (325)
T ss_pred             cCCCceEEEecccc---eeEeeeecc-----------eEEEec-cccceeeeeecc
Confidence            99766666666655   556677665           677777 778888887653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.4e-18  Score=142.63  Aligned_cols=260  Identities=14%  Similarity=0.125  Sum_probs=186.8

Q ss_pred             eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc------ceEEeEeeecCcEeEEEEcCC
Q 020107            4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK------NLELLYRMDTAGIFDIKWSPV   77 (331)
Q Consensus         4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~------~~~~~~~~~~~~v~~~~~~~~   77 (331)
                      .++++..|..||+-.++++....|++++          .+|.+.+|+++....      .....+++|.++|.|++..+.
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~s----------ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n  355 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITAS----------EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN  355 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEec----------cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC
Confidence            3457788899999888888778999998          899999999933111      133345889999999999999


Q ss_pred             CCCCCCeEEEEcCCccE-EEecCCCc----------------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee
Q 020107           78 GGNAGPFLAQADADGGL-LRDITGEK----------------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE  140 (331)
Q Consensus        78 ~~~~~~~l~~~~~dg~i-iw~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  140 (331)
                          ++.+++|+.||.| .|++....                .|...++.+++++....|++++.||++++|+...... 
T Consensus       356 ----~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-  430 (577)
T KOG0642|consen  356 ----GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-  430 (577)
T ss_pred             ----ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-
Confidence                9999999999999 99765221                1578889999999999999999999999999876543 


Q ss_pred             eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc----cCCCcceEEEEEecCCCCEEEEEec
Q 020107          141 VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS----KIHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                      +........+.-.++.+-.......++...-+.-.+++.........+...    +.....+..+.++| ...+.+++..
T Consensus       431 ~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~he  509 (577)
T KOG0642|consen  431 CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHE  509 (577)
T ss_pred             cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEeccc
Confidence            111112122334566665423234444444444445555554444433320    00124477888899 8899999999


Q ss_pred             CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107          217 DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH  284 (331)
Q Consensus       217 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  284 (331)
                      |+.|+++|..++ .++.. ...|...++++++.|++ ..++++..++.+.+|++...  .++.....|
T Consensus       510 d~~Ir~~dn~~~-~~l~s-~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k--~~~~es~~~  572 (577)
T KOG0642|consen  510 DRSIRFFDNKTG-KILHS-MVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVK--TCVLESTAH  572 (577)
T ss_pred             CCceeccccccc-ccchh-eeeccceecceeecCCC-ceEEeecCCceeehhhccch--heeeccccc
Confidence            999999999996 55555 48899999999999997 67777778888888887663  444444444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=1e-17  Score=143.97  Aligned_cols=232  Identities=12%  Similarity=0.044  Sum_probs=161.9

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc---cE-EEecCCCcc-----cCccEEEEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG---GL-LRDITGEKI-----SSSMCLCLEW  113 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i-iw~~~~~~~-----~~~~v~~~~~  113 (331)
                      +..|++||.+...  ...+ ..|...+...+|+|+    ++.|+..+.++   .+ +|++.+++.     .......++|
T Consensus       183 ~~~i~i~d~dg~~--~~~l-t~~~~~v~~p~wSPD----G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~w  255 (429)
T PRK01742        183 PYEVRVADYDGFN--QFIV-NRSSQPLMSPAWSPD----GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAF  255 (429)
T ss_pred             eEEEEEECCCCCC--ceEe-ccCCCccccceEcCC----CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeE
Confidence            5789999988764  3333 457778999999999    88888876543   45 899877542     1233457899


Q ss_pred             cCCCCeEEEEe-cCCeEEEE--EccccceeeeeeeecccceeEEEeeCCCCCcEEE-EEcCCCeEEEEEccCCCceeeee
Q 020107          114 NPSATSITVGL-SDGSVSIV--SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY-TGSDDCKFSGWDIRESPFKLAFQ  189 (331)
Q Consensus       114 ~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~  189 (331)
                      +|+|+.|+.+. .+|.+.||  |+.+++.   ..+..+...+....|+| ++..|+ +...++...||++..........
T Consensus       256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        256 SPDGSRLAFASSKDGVLNIYVMGANGGTP---SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             CCCCCEEEEEEecCCcEEEEEEECCCCCe---EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence            99999888765 57866655  5555543   34455666788999999 566544 55567888888876433222222


Q ss_pred             cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107          190 NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK  269 (331)
Q Consensus       190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (331)
                      .   +..  ....|+| +++.|+..+.++ +.+||+.++......  ..  .....+.|+|++ ..++.++.+++..+|.
T Consensus       332 ~---~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt--~~--~~~~~~~~sPdG-~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        332 G---GRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLS--ST--FLDESPSISPNG-IMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             c---CCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEec--CC--CCCCCceECCCC-CEEEEEEcCCCceEEE
Confidence            2   333  4578999 999998887765 556999875321111  11  234567899997 6677777788888888


Q ss_pred             EcCcccceeEEeecCCcceeeeeecCCC
Q 020107          270 VGGEKAEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       270 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                      +....++....+..|.+.+...+|+|-.
T Consensus       400 ~~~~~G~~~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        400 LVSADGRFKARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             EEECCCCceEEccCCCCCCCCcccCCCC
Confidence            8766688888898888889999999864

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.80  E-value=1.2e-17  Score=136.65  Aligned_cols=192  Identities=22%  Similarity=0.370  Sum_probs=146.2

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----ccCccEEEEEEcC
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----ISSSMCLCLEWNP  115 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----~~~~~v~~~~~~~  115 (331)
                      .||.+.+.+-...   ++.....|.++|.+-+|+|+    |.-|+++++||.+ +|.-...-     ....+|+|++|.|
T Consensus        83 ~DGkf~il~k~~r---VE~sv~AH~~A~~~gRW~~d----GtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p  155 (737)
T KOG1524|consen   83 NDGRFVILNKSAR---VERSISAHAAAISSGRWSPD----GAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP  155 (737)
T ss_pred             CCceEEEecccch---hhhhhhhhhhhhhhcccCCC----CceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence            5999999876553   44445789999999999999    9999999999999 99876642     2468899999999


Q ss_pred             CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107          116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK  195 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  195 (331)
                      +.+.++-+-. +.+.|=-+..+.  .+..++.|++-|.++.|++ ..+++++|+.|-..++||... ..+  +.. ..|.
T Consensus       156 ~S~~vl~c~g-~h~~IKpL~~n~--k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G-~~L--f~S-~~~e  227 (737)
T KOG1524|consen  156 NSNSIVFCQG-GHISIKPLAANS--KIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQG-ANL--FTS-AAEE  227 (737)
T ss_pred             CCCceEEecC-CeEEEeeccccc--ceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccC-ccc--ccC-Chhc
Confidence            9887665544 455555554432  2567889999999999998 779999999999999999764 323  332 4499


Q ss_pred             cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107          196 MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF  265 (331)
Q Consensus       196 ~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  265 (331)
                      .+|++++|+| + ..++.++. +++|             +..+..+.|..++|++|| ..+.++++.+.+
T Consensus       228 y~ITSva~np-d-~~~~v~S~-nt~R-------------~~~p~~GSifnlsWS~DG-TQ~a~gt~~G~v  280 (737)
T KOG1524|consen  228 YAITSVAFNP-E-KDYLLWSY-NTAR-------------FSSPRVGSIFNLSWSADG-TQATCGTSTGQL  280 (737)
T ss_pred             cceeeeeecc-c-cceeeeee-eeee-------------ecCCCccceEEEEEcCCC-ceeeccccCceE
Confidence            9999999999 6 66777764 3344             124567789999999996 455555555554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.80  E-value=2.6e-18  Score=128.47  Aligned_cols=223  Identities=18%  Similarity=0.235  Sum_probs=162.3

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI  103 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~  103 (331)
                      .+|.+|.          ..|.|++|.+.+.. ....+...+...|+.+.--|.     ..|.+-+.|+.+ +|++.....
T Consensus        26 ~rL~sg~----------~~G~V~~w~lqt~r-~~~~~r~~g~~~it~lq~~p~-----d~l~tqgRd~~L~lw~ia~s~~   89 (323)
T KOG0322|consen   26 ERLMSGL----------SVGIVKMWVLQTER-DLPLIRLFGRLFITNLQSIPN-----DSLDTQGRDPLLILWTIAYSAF   89 (323)
T ss_pred             hhhhccc----------ccceEEEEEeecCc-cchhhhhhccceeeceeecCC-----cchhhcCCCceEEEEEccCcce
Confidence            4688887          79999999999875 333332256677888888775     267777788887 777654111


Q ss_pred             -----------------------------------------------------------cCccEEEEEEcC-CCC--eEE
Q 020107          104 -----------------------------------------------------------SSSMCLCLEWNP-SAT--SIT  121 (331)
Q Consensus       104 -----------------------------------------------------------~~~~v~~~~~~~-~~~--~l~  121 (331)
                                                                                 ..+.+.+..+.. .+.  +++
T Consensus        90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll  169 (323)
T KOG0322|consen   90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL  169 (323)
T ss_pred             EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence                                                                       023345555432 222  477


Q ss_pred             EEecCCeEEEEEccccce--------eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc----eeeee
Q 020107          122 VGLSDGSVSIVSVVESQL--------EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF----KLAFQ  189 (331)
Q Consensus       122 ~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~  189 (331)
                      +|.++|.+.+||+.++..        +.......|..+|.++.+.+ .-+.=++|+.+..+..|.+.-...    .....
T Consensus       170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~  248 (323)
T KOG0322|consen  170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT  248 (323)
T ss_pred             EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccceEE
Confidence            888899999999998621        11233456889999999987 445557788888889998874321    11222


Q ss_pred             cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107          190 NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK  269 (331)
Q Consensus       190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (331)
                      .   ..-.|..+.+-| |++++||++.|+.||+|..++. +|+.. +..|.+.|++++|+|+. +++++++.|..|.+|+
T Consensus       249 l---knpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl-~pLAV-LkyHsagvn~vAfspd~-~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  249 L---KNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTL-NPLAV-LKYHSAGVNAVAFSPDC-ELMAAASKDARISLWK  321 (323)
T ss_pred             e---cCCCccceEEcc-CCcEEeecccCCcEEEEEeccC-Cchhh-hhhhhcceeEEEeCCCC-chhhhccCCceEEeee
Confidence            2   345688899999 9999999999999999999996 66665 58899999999999996 7788888888888898


Q ss_pred             Ec
Q 020107          270 VG  271 (331)
Q Consensus       270 ~~  271 (331)
                      +.
T Consensus       322 LY  323 (323)
T KOG0322|consen  322 LY  323 (323)
T ss_pred             cC
Confidence            63

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.80  E-value=5.3e-17  Score=144.60  Aligned_cols=281  Identities=9%  Similarity=0.087  Sum_probs=187.4

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc---eEEeEeee--cCcEeEEEEcCCCCCCCCeEE
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN---LELLYRMD--TAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~---~~~~~~~~--~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      +..++.++.  ++.+|++|+          .||+|++|+..+....   .+.....+  ...+.++...+.    ++.+|
T Consensus      1051 v~k~a~s~~--~~s~FvsgS----------~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~----~~~~A 1114 (1431)
T KOG1240|consen 1051 VIKLAVSSE--HTSLFVSGS----------DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN----GDQFA 1114 (1431)
T ss_pred             ccceeecCC--CCceEEEec----------CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC----CCeEE
Confidence            334444433  337999998          8999999998764322   22222333  566999999998    88999


Q ss_pred             EEcCCccE-EEecCCCcc--------------cCccE-EEEEEcCC-C-CeEEEEecCCeEEEEEccccceeeeeeeecc
Q 020107           87 QADADGGL-LRDITGEKI--------------SSSMC-LCLEWNPS-A-TSITVGLSDGSVSIVSVVESQLEVLQQWKAH  148 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~~--------------~~~~v-~~~~~~~~-~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  148 (331)
                      +++.||.+ +.++...+.              ..+.+ ...+|... . ..++.+...+.|..||++.....-.......
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence            99999999 555544111              12223 33344332 2 3688888899999999987432222233344


Q ss_pred             cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC--CEEEEEe--cCCeEEEEE
Q 020107          149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS--NTLLTGS--YDEYLRVWD  224 (331)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~--~d~~i~iwd  224 (331)
                      .+.|++++.+| .++.+++|+..|.+.+||+|-+..+..+.. + +..+++.+..+|..+  ...++++  ..+.|.+|+
T Consensus      1195 hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~-P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1195 HGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEH-P-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             ccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccC-c-ccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            56899999999 778999999999999999998877777765 3 558899998888444  4554444  467899999


Q ss_pred             ecCCCCCceeeeee-----------c-----CC---ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-----------
Q 020107          225 VRSISKPVNETSVC-----------L-----GG---GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-----------  274 (331)
Q Consensus       225 ~~~~~~~~~~~~~~-----------~-----~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  274 (331)
                      +.++.+.... ...           -     ..   .+.+.-  +++.+.+++++++.+|+.|+.....           
T Consensus      1272 ~~~g~~~~vl-~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~--~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~ 1348 (1431)
T KOG1240|consen 1272 METGLRQTVL-WASDGAPILSYALPSNDARKPDSLAGISCGV--CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPST 1348 (1431)
T ss_pred             cccCcceEEE-EcCCCCcchhhhcccccCCCCCcccceeeec--ccCCceeeecCCccceeeccCCCcccccccccCccc
Confidence            9886321111 111           0     01   111222  2334889999999999999875422           


Q ss_pred             -----------------------------------cceeEEe--------ecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107          275 -----------------------------------AEVLETY--------AKHGSLAYGADWQRGRSSLEGKRKNSLVAT  311 (331)
Q Consensus       275 -----------------------------------~~~~~~~--------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  311 (331)
                                                         .+.....        ..|..+|+++++.....        .+|++
T Consensus      1349 ~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q--------~llvs 1420 (1431)
T KOG1240|consen 1349 SYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQ--------PLLVS 1420 (1431)
T ss_pred             cccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCc--------cEEEE
Confidence                                               0000111        14777888888877764        79999


Q ss_pred             eecCCCeEEEEc
Q 020107          312 CSFYDRLLRIWM  323 (331)
Q Consensus       312 ~~~~d~~i~iW~  323 (331)
                      ++ .||.|+||.
T Consensus      1421 ~s-~dG~IkiWk 1431 (1431)
T KOG1240|consen 1421 SS-RDGVIKIWK 1431 (1431)
T ss_pred             ec-CCCeeeecC
Confidence            99 999999995

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=9.9e-19  Score=140.39  Aligned_cols=256  Identities=14%  Similarity=0.134  Sum_probs=197.4

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      +..++.+.+...+   ..|+.|+          +.|.|-.+|..+..  +... ..-...|.++.|..+    .+++|++
T Consensus       129 eFGPY~~~ytrnG---rhlllgG----------rKGHlAa~Dw~t~~--L~~E-i~v~Etv~Dv~~LHn----eq~~AVA  188 (545)
T KOG1272|consen  129 EFGPYHLDYTRNG---RHLLLGG----------RKGHLAAFDWVTKK--LHFE-INVMETVRDVTFLHN----EQFFAVA  188 (545)
T ss_pred             ccCCeeeeecCCc---cEEEecC----------Cccceeeeecccce--eeee-eehhhhhhhhhhhcc----hHHHHhh
Confidence            4566777777766   7788887          79999999998875  3222 112466999999998    7899988


Q ss_pred             cCCccEEEecCCCccc----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE
Q 020107           89 DADGGLLRDITGEKIS----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM  164 (331)
Q Consensus        89 ~~dg~iiw~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (331)
                      ...-..++|-...+.|    ...|..+.|-|..-+|++++..|.+..-|+.+|+.  +..+....+.+..++-+| -+..
T Consensus       189 QK~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl--Va~~~t~~G~~~vm~qNP-~NaV  265 (545)
T KOG1272|consen  189 QKKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL--VASIRTGAGRTDVMKQNP-YNAV  265 (545)
T ss_pred             hhceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhh--hHHHHccCCccchhhcCC-ccce
Confidence            8776668888877765    46788899999988899999999999999999976  777777778899999999 6688


Q ss_pred             EEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceE
Q 020107          165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVW  244 (331)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  244 (331)
                      +-+|...|+|.+|.......+..+..   |.++|.+|++.+ +|.+++|.+.|..++|||+|+..++... ..  ..+..
T Consensus       266 ih~GhsnGtVSlWSP~skePLvKiLc---H~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~-~t--p~~a~  338 (545)
T KOG1272|consen  266 IHLGHSNGTVSLWSPNSKEPLVKILC---HRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTY-RT--PHPAS  338 (545)
T ss_pred             EEEcCCCceEEecCCCCcchHHHHHh---cCCCcceEEECC-CCcEEeecccccceeEeeecccccccee-ec--CCCcc
Confidence            99999999999999998887777776   999999999999 9999999999999999999997544433 22  55677


Q ss_pred             EEEECCCCCCeEEEEEecCcEEEEEEcCcc-cceeEEeecC--CcceeeeeecCCC
Q 020107          245 RIKHHPFIPGLVLAACMHNGFAVVKVGGEK-AEVLETYAKH--GSLAYGADWQRGR  297 (331)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h--~~~v~~~~~~~~~  297 (331)
                      .+++|..  + +++.+..+.+.+|.-.-.. +..-..+..|  .+.|.++.|.|-.
T Consensus       339 ~ls~Sqk--g-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E  391 (545)
T KOG1272|consen  339 NLSLSQK--G-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE  391 (545)
T ss_pred             ccccccc--c-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH
Confidence            8888876  4 4455566666666532221 1111112223  3489999999975

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.5e-18  Score=138.89  Aligned_cols=256  Identities=16%  Similarity=0.202  Sum_probs=191.5

Q ss_pred             EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCC--CCeEEEEecCCe
Q 020107           59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPS--ATSITVGLSDGS  128 (331)
Q Consensus        59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~--~~~l~~~~~dg~  128 (331)
                      ...+..|.+.|+.|.|+..    +..|++++.|..+ +|+......       |...|....|-|.  ...+++.+.||.
T Consensus       135 ~~kL~~H~GcVntV~FN~~----Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQR----GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             hhcccCCCCccceeeeccc----CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            3345779999999999999    9999999999999 999877654       5566666678774  356999999999


Q ss_pred             EEEEEccc-cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc---ceEEEEEe
Q 020107          129 VSIVSVVE-SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM---GVCCIASI  204 (331)
Q Consensus       129 i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~  204 (331)
                      +++=.+.. +..+....+..|.++|..++.-|..++.|.+++.|+.+.-+|+++......+.....+..   ....++.+
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            99987654 333335566779999999999999999999999999999999998876555554343444   67899999


Q ss_pred             cCCCCEEEEEecCCeEEEEEecCCCCC-----ceeeee-----ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc
Q 020107          205 PSDSNTLLTGSYDEYLRVWDVRSISKP-----VNETSV-----CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK  274 (331)
Q Consensus       205 ~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (331)
                      |.+.+.+++|+.|..+++||.+...+.     +..+..     ...-.|++++|+.++ .-++++-.+..|+++.-....
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~  369 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGD  369 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc-cceeeeecccceEEecccccc
Confidence            977889999999999999999874322     222111     233469999999877 556666677776666332222


Q ss_pred             c----------ceeEE-eecCCc--ceeeeee-cCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          275 A----------EVLET-YAKHGS--LAYGADW-QRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       275 ~----------~~~~~-~~~h~~--~v~~~~~-~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +          ..+.. ++||..  .|-++-| -|..         .+++||+ +=|.|.||+-.++.+
T Consensus       370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs---------EyVvSGS-DCGhIFiW~K~t~ei  428 (559)
T KOG1334|consen  370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS---------EYVVSGS-DCGHIFIWDKKTGEI  428 (559)
T ss_pred             CCCCCCCcchhhccchhhcccccccccceeeeccCcc---------ceEEecC-ccceEEEEecchhHH
Confidence            2          23333 788876  3555554 3444         7999999 779999999887754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.79  E-value=8.1e-17  Score=143.48  Aligned_cols=257  Identities=16%  Similarity=0.159  Sum_probs=176.5

Q ss_pred             EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------------cCccEEEEEEcCCCCeEEEEecCC
Q 020107           62 YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------------SSSMCLCLEWNPSATSITVGLSDG  127 (331)
Q Consensus        62 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~dg  127 (331)
                      ...|...|..++.++..   +.++++|+.||++ +|+......             ..+.+.++...+.+..+|+++.||
T Consensus      1044 L~Ehs~~v~k~a~s~~~---~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEH---TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred             hhhccccccceeecCCC---CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence            35578888899988874   5899999999999 999876433             256778888889999999999999


Q ss_pred             eEEEEEcccccee-----eeee--eecccceeEEEeeCCCCCc-EEEEEcCCCeEEEEEccCCCceeeeecccCCCcceE
Q 020107          128 SVSIVSVVESQLE-----VLQQ--WKAHEFELWATSFDVHQPH-MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC  199 (331)
Q Consensus       128 ~i~i~d~~~~~~~-----~~~~--~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  199 (331)
                      .|++.+++.....     ..+.  .+.....|..-++...... .++.+..-+.|..||+++......++. +...+.|+
T Consensus      1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~-~~~hG~vT 1199 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN-QLRHGLVT 1199 (1431)
T ss_pred             eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc-Ccccccee
Confidence            9999998862111     1111  1112223344455543444 788889999999999998877666665 33567899


Q ss_pred             EEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC--CeEEEEEe--cCcEEEEEEcCccc
Q 020107          200 CIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP--GLVLAACM--HNGFAVVKVGGEKA  275 (331)
Q Consensus       200 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~  275 (331)
                      +++.+| .++++++|...|.+.+||+|- +.++.....++..+|..+..+|-.+  ...+++++  .+-+.+|++.... 
T Consensus      1200 Si~idp-~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~- 1276 (1431)
T KOG1240|consen 1200 SIVIDP-WCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL- 1276 (1431)
T ss_pred             EEEecC-CceEEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc-
Confidence            999999 899999999999999999998 4788877778889999999988654  44555444  4556677766532 


Q ss_pred             ceeEEeecCCcceeeeee-c-------CCC---CcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          276 EVLETYAKHGSLAYGADW-Q-------RGR---SSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       276 ~~~~~~~~h~~~v~~~~~-~-------~~~---~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                       ...++..-. .+..+.+ .       |..   ..+.....+.++.+|+ .|..|+.||.....
T Consensus      1277 -~~~vl~~s~-~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltgg-sd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 -RQTVLWASD-GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGG-SDMKIRKWDPTRPE 1337 (1431)
T ss_pred             -ceEEEEcCC-CCcchhhhcccccCCCCCcccceeeecccCCceeeecC-CccceeeccCCCcc
Confidence             222221110 0000000 0       000   0000112236899999 89999999987643

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.79  E-value=2.6e-17  Score=134.67  Aligned_cols=199  Identities=16%  Similarity=0.232  Sum_probs=138.3

Q ss_pred             CCcEEEEeccCccc---ce-EEeEeeecCcEeEEEE--cCCCCCCCCeEEEEcCCccE-EEecCCC----------cccC
Q 020107           43 NGSISLFNVNAEEK---NL-ELLYRMDTAGIFDIKW--SPVGGNAGPFLAQADADGGL-LRDITGE----------KISS  105 (331)
Q Consensus        43 ~g~i~vw~~~~~~~---~~-~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~~dg~i-iw~~~~~----------~~~~  105 (331)
                      ...+++|+......   ++ +.++++.  ...+-+|  .++.+. +--|..|-.-|.+ +.+....          ...+
T Consensus       143 g~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~-g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~k  219 (636)
T KOG2394|consen  143 GRELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPK-GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINK  219 (636)
T ss_pred             CCeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCC-CcceEEeeccCceEEecchhhHHHHhhhhcccccc
Confidence            55788888774321   11 1222222  2233334  222222 5567777777777 2222221          1246


Q ss_pred             ccEEEEEEcCCCC-eEEEEecCCeEEEEEcccc--------------c------------eeeeeeeecccceeEEEeeC
Q 020107          106 SMCLCLEWNPSAT-SITVGLSDGSVSIVSVVES--------------Q------------LEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus       106 ~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~--------------~------------~~~~~~~~~~~~~v~~~~~~  158 (331)
                      ..|+|+.|-|.++ .++++-.+|.+.+||.+-.              .            ..++..+.-....|...+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            8899999999655 4666677999999976420              0            01222333345678899999


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC  238 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  238 (331)
                      | ++.+|++.+.||.+||+|..+.+....++.   .-+...|++|+| |+++|++|++|.-|.||.+... +.+.. -.+
T Consensus       300 ~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS---YFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~er-RVVAR-GqG  372 (636)
T KOG2394|consen  300 P-DGKYLATVSQDGFLRIFDFDTQELLGVMKS---YFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEER-RVVAR-GQG  372 (636)
T ss_pred             C-CCceEEEEecCceEEEeeccHHHHHHHHHh---hccceEEEEEcC-CccEEEecCCcceEEEEEeccc-eEEEe-ccc
Confidence            9 999999999999999999998776666655   567899999999 9999999999999999999873 33333 689


Q ss_pred             cCCceEEEEECCC
Q 020107          239 LGGGVWRIKHHPF  251 (331)
Q Consensus       239 ~~~~v~~~~~~~~  251 (331)
                      |...|..++|.|-
T Consensus       373 HkSWVs~VaFDpy  385 (636)
T KOG2394|consen  373 HKSWVSVVAFDPY  385 (636)
T ss_pred             cccceeeEeeccc
Confidence            9999999999983

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.79  E-value=6.4e-15  Score=127.17  Aligned_cols=275  Identities=21%  Similarity=0.384  Sum_probs=199.8

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCC-CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC-eEEEE
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSR-NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP-FLAQA   88 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~-~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~   88 (331)
                      .+..+.|+|.+   .+++.+.          . ++.+++|++....  .......|...|.+++|+|+    +. .++++
T Consensus       157 ~v~~~~~~~~~---~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~~~~~~  217 (466)
T COG2319         157 SVTSLAFSPDG---KLLASGS----------SLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFSPD----GGLLIASG  217 (466)
T ss_pred             cEEEEEECCCC---CEEEecC----------CCCCceEEEEcCCCc--eEEeeccCCCceEEEEEcCC----cceEEEEe
Confidence            44566677766   6777775          4 9999999999743  33444668999999999988    66 55555


Q ss_pred             cCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           89 DADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      +.|+.+ +|+......       |.... ...|++++..+++++.|+.+++|+...... ....+..|...+.++.|+| 
T Consensus       218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~-  294 (466)
T COG2319         218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSP-  294 (466)
T ss_pred             cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECC-
Confidence            999999 897763322       22332 227999998889999999999999987543 2333367888999999999 


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE-ecCCeEEEEEecCCCCCceeeeeec
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG-SYDEYLRVWDVRSISKPVNETSVCL  239 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~  239 (331)
                      .+..+++++.|+.+++||.++........ ...|...+..+.+ +.++..++.+ ..|+.+.+|++.... ....  ...
T Consensus       295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~--~~~  369 (466)
T COG2319         295 DGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK-PLKT--LEG  369 (466)
T ss_pred             CCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc-eeEE--ecC
Confidence            66777778888899999998876555554 1237778999999 5243555555 688999999999864 2222  233


Q ss_pred             CCceEEEEECCCCCCeEEE-EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107          240 GGGVWRIKHHPFIPGLVLA-ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL  318 (331)
Q Consensus       240 ~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~  318 (331)
                      ...+..+.+.+ . ...+. ...++.+.+|+....  ........+...+....+.+++         ..+++++ .++.
T Consensus       370 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~  435 (466)
T COG2319         370 HSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTG--SLLRNLDGHTSRVTSLDFSPDG---------KSLASGS-SDNT  435 (466)
T ss_pred             CceEEEEEECC-C-CCEEEEecCCCceEEEecccC--eeeeeccCCCCcEEEEEECCCC---------cEEEEec-CCCc
Confidence            33389999999 6 66666 556677778887763  3333333332788889999998         5888888 8999


Q ss_pred             EEEEcCCC
Q 020107          319 LRIWMPES  326 (331)
Q Consensus       319 i~iW~~~~  326 (331)
                      +++|+..+
T Consensus       436 ~~~~~~~~  443 (466)
T COG2319         436 IRLWDLKT  443 (466)
T ss_pred             EEEEeccC
Confidence            99999876

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=3.2e-18  Score=140.33  Aligned_cols=212  Identities=20%  Similarity=0.266  Sum_probs=158.1

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcC--CCCeEEEEecCC
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNP--SATSITVGLSDG  127 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~--~~~~l~~~~~dg  127 (331)
                      ++..+.+|++.|++++|+.+    |.+|++|+.|-.+ +||....+.       |...|.++.|-|  +.+.+++|..|.
T Consensus        42 lE~eL~GH~GCVN~LeWn~d----G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNAD----GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hhhhhccccceecceeecCC----CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence            33455899999999999999    9999999999999 999876543       678899999998  445789999999


Q ss_pred             eEEEEEccc--------cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee-------eeeccc
Q 020107          128 SVSIVSVVE--------SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL-------AFQNSK  192 (331)
Q Consensus       128 ~i~i~d~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------~~~~~~  192 (331)
                      .|+++|+..        +-......+..|...|..++-.|..++.+.+++.||+|+-+|+|......       .+....
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~  197 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN  197 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence            999999985        12234556678999999999999777999999999999999999754211       111111


Q ss_pred             CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC-----------------ceeeeeecC-----------CceE
Q 020107          193 IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP-----------------VNETSVCLG-----------GGVW  244 (331)
Q Consensus       193 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------------~~~~~~~~~-----------~~v~  244 (331)
                      ..--...++.++|.+..+|++|+.|-..++||.|...++                 +..+...|.           ..++
T Consensus       198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t  277 (758)
T KOG1310|consen  198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT  277 (758)
T ss_pred             hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence            123457899999988999999999999999996542211                 111111221           1256


Q ss_pred             EEEECCCCCCeEEEEEecCcEEEEEEcCcc
Q 020107          245 RIKHHPFIPGLVLAACMHNGFAVVKVGGEK  274 (331)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (331)
                      -++|+|+|..+|+. -+...++++++...+
T Consensus       278 ~vtfnpNGtElLvs-~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  278 YVTFNPNGTELLVS-WGGEHVYLFDVNEDK  306 (758)
T ss_pred             EEEECCCCcEEEEe-eCCeEEEEEeecCCC
Confidence            68999998555544 445667788887753

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.78  E-value=2.4e-15  Score=117.88  Aligned_cols=229  Identities=16%  Similarity=0.185  Sum_probs=159.4

Q ss_pred             eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCcc
Q 020107           14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGG   93 (331)
Q Consensus        14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~   93 (331)
                      .+.+.-++.+...|..|+          .+| .++|+.....+....  ......|-.+-|+..      ++|..+.+..
T Consensus         7 ti~~~~~Nqd~~~lsvGs----------~~G-yk~~~~~~~~k~~~~--~~~~~~IvEmLFSSS------LvaiV~~~qp   67 (391)
T KOG2110|consen    7 TINFIGFNQDSTLLSVGS----------KDG-YKIFSCSPFEKCFSK--DTEGVSIVEMLFSSS------LVAIVSIKQP   67 (391)
T ss_pred             ceeeeeeccceeEEEccC----------CCc-eeEEecCchHHhhcc--cCCCeEEEEeecccc------eeEEEecCCC
Confidence            344444555557899998          454 788888876521111  111234777888877      7776665333


Q ss_pred             --E-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee---cccceeEEEeeCCCCC
Q 020107           94 --L-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK---AHEFELWATSFDVHQP  162 (331)
Q Consensus        94 --i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~  162 (331)
                        + +.+......     -+.+|.++.++.  +.|++.-.+ .|+|||+++.++  +.++.   .+...+.++.+++ .+
T Consensus        68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~-~n  141 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKL--LHTIETTPPNPKGLCALSPNN-AN  141 (391)
T ss_pred             ceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEeccccee--ehhhhccCCCccceEeeccCC-CC
Confidence              2 555544322     256788888754  567666664 499999998754  55443   3455566666665 44


Q ss_pred             cEEEEEc--CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCe-EEEEEecCCCCCceeeeee-
Q 020107          163 HMVYTGS--DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY-LRVWDVRSISKPVNETSVC-  238 (331)
Q Consensus       163 ~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~-  238 (331)
                      .+++--+  ..|.|.+||..+-+....+..   |.+.+.+++|++ +|.+|||+++.|+ ||+|.+.++ +.+.++..+ 
T Consensus       142 ~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a---H~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G-~kl~eFRRG~  216 (391)
T KOG2110|consen  142 CYLAYPGSTTSGDVVLFDTINLQPVNTINA---HKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEG-QKLYEFRRGT  216 (391)
T ss_pred             ceEEecCCCCCceEEEEEcccceeeeEEEe---cCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCc-cEeeeeeCCc
Confidence            5666533  468999999998877777776   999999999999 9999999999886 789999886 444442222 


Q ss_pred             cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      ....|.+++|+|++ .++.+++..+.++++++...
T Consensus       217 ~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  217 YPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eeeEEEEEEECCCC-CeEEEecCCCeEEEEEeccc
Confidence            24568999999997 68888888899999999763

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=7.1e-19  Score=150.63  Aligned_cols=236  Identities=16%  Similarity=0.148  Sum_probs=181.8

Q ss_pred             eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107           63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  135 (331)
                      .+|..+|+|+.|...    +.++++|+.|..+ ||...+..+      |.+.|+.++.+.+.-++++++.|..|++|.+.
T Consensus       187 lgH~naVyca~fDrt----g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRT----GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             Hhhhhheeeeeeccc----cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            578899999999999    9999999999999 999877654      78899999999888889999999999999999


Q ss_pred             ccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeee-ecccCCCcceEEEEEecCCCCEEEEE
Q 020107          136 ESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAF-QNSKIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      .+.  ++..+.+|++.|++++|+|     ..+.+.||++++||.+-...+..- .........+.++.|.. .+.-++|+
T Consensus       263 ~~~--pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tg  334 (1113)
T KOG0644|consen  263 DGA--PVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN-NGDRFLTG  334 (1113)
T ss_pred             CCc--hHHHHhccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccc-cccccccc
Confidence            884  4888999999999999999     237889999999999821111110 00011245677888877 88899999


Q ss_pred             ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107          215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQ  294 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  294 (331)
                      +.|+.-..|.+....        .+...+.-+.++.+-....+++-.+-.+.+|++..  +.+...+.+|...++.+.++
T Consensus       335 s~d~ea~n~e~~~l~--------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~--g~l~H~l~ghsd~~yvLd~H  404 (1113)
T KOG0644|consen  335 SRDGEARNHEFEQLA--------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT--GQLLHNLMGHSDEVYVLDVH  404 (1113)
T ss_pred             cCCcccccchhhHhh--------hhccceEEEeccccccccceeeeeeeEeeeeeccc--chhhhhhcccccceeeeeec
Confidence            999998888776421        11111222222223224445555555556777766  68888889999999999999


Q ss_pred             CCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          295 RGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       295 ~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      |-++        +...+++ .||...|||+-.+..
T Consensus       405 pfn~--------ri~msag-~dgst~iwdi~eg~p  430 (1113)
T KOG0644|consen  405 PFNP--------RIAMSAG-YDGSTIIWDIWEGIP  430 (1113)
T ss_pred             CCCc--------Hhhhhcc-CCCceEeeecccCCc
Confidence            9997        8888999 999999999987754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.78  E-value=2.1e-17  Score=138.79  Aligned_cols=232  Identities=14%  Similarity=0.250  Sum_probs=176.4

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .++||+|+.++   .++|+|+          .|..|.+|+.+-..    .+.-.|.+.|.||.|+|-    ...|++++-
T Consensus        55 tVycVAys~dG---krFASG~----------aDK~VI~W~~klEG----~LkYSH~D~IQCMsFNP~----~h~LasCsL  113 (1081)
T KOG1538|consen   55 TVYCVAYAKDG---KRFASGS----------ADKSVIIWTSKLEG----ILKYSHNDAIQCMSFNPI----THQLASCSL  113 (1081)
T ss_pred             eEEEEEEccCC---ceeccCC----------CceeEEEecccccc----eeeeccCCeeeEeecCch----HHHhhhcch
Confidence            45677777666   8999998          89999999876543    334469999999999999    889999987


Q ss_pred             CccEEEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC----
Q 020107           91 DGGLLRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP----  162 (331)
Q Consensus        91 dg~iiw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----  162 (331)
                      +..-+|.......    ....+.+.+|..||++++.|-.+|+|.+-+........+..--+...+|.+++|+|..+    
T Consensus       114 sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~  193 (1081)
T KOG1538|consen  114 SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRN  193 (1081)
T ss_pred             hhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCcc
Confidence            6666998876544    35678899999999999999999999998755433222333335678999999998542    


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG  242 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  242 (331)
                      ..+++..-..++..+.+.... +..-..   -.-...|+.+.| +|.+++.|+.|+.+++|--+.  ..+-+ .......
T Consensus       194 di~aV~DW~qTLSFy~LsG~~-Igk~r~---L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~G--vrLGT-vg~~D~W  265 (1081)
T KOG1538|consen  194 DILAVADWGQTLSFYQLSGKQ-IGKDRA---LNFDPCCISYFT-NGEYILLGGSDKQLSLFTRDG--VRLGT-VGEQDSW  265 (1081)
T ss_pred             ceEEEEeccceeEEEEeccee-eccccc---CCCCchhheecc-CCcEEEEccCCCceEEEeecC--eEEee-cccccee
Confidence            467777777888888876432 221111   345678999999 999999999999999996543  22333 3457789


Q ss_pred             eEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      |+.++..|++ +.++.+|.|+++..+++-.
T Consensus       266 IWtV~~~PNs-Q~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  266 IWTVQAKPNS-QYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEEEEEccCC-ceEEEEEccCeeehhhhHH
Confidence            9999999998 7888889999988877643

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.77  E-value=3.1e-17  Score=126.60  Aligned_cols=271  Identities=17%  Similarity=0.226  Sum_probs=179.2

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCC-CeEEEEc
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAG-PFLAQAD   89 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~   89 (331)
                      .+.-|.|..++   .++.++.|         .++.|.+|++...+ -...+ .....++.+++|||+    + .+|.+..
T Consensus        50 ki~yieW~ads---~~ilC~~y---------k~~~vqvwsl~Qpe-w~ckI-deg~agls~~~WSPd----grhiL~tse  111 (447)
T KOG4497|consen   50 KIVYIEWKADS---CHILCVAY---------KDPKVQVWSLVQPE-WYCKI-DEGQAGLSSISWSPD----GRHILLTSE  111 (447)
T ss_pred             Hhhheeeeccc---eeeeeeee---------ccceEEEEEeecce-eEEEe-ccCCCcceeeeECCC----cceEeeeec
Confidence            34556777665   67777765         69999999998865 22223 334567999999999    6 5677777


Q ss_pred             CCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-cceeeeeeeecccceeEEEeeCCCCC
Q 020107           90 ADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-SQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      .+-.+ +|.+.+.+.     .+..+..++|+|+|++.+..+.-.....+.+.. ..+..++.++...-..+.+.|+| ++
T Consensus       112 F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg  190 (447)
T KOG4497|consen  112 FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DG  190 (447)
T ss_pred             ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CC
Confidence            78888 999988765     356678999999999988887732222222221 22334555665666788999999 66


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC-------------
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS-------------  229 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------  229 (331)
                      +.++         +||.--.-.+..+.    ..-++..+.|+| .+++|++|+.|+.+|+.+--+.+             
T Consensus       191 ~~la---------Vwd~~Leykv~aYe----~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~d  256 (447)
T KOG4497|consen  191 NWLA---------VWDNVLEYKVYAYE----RGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHD  256 (447)
T ss_pred             cEEE---------Eecchhhheeeeee----eccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccC
Confidence            6655         57654322222222    246799999999 99999999999999886532211             


Q ss_pred             -----------C---------------------------------Ccee-e------eeecCCceEEEEECCCCCCeEEE
Q 020107          230 -----------K---------------------------------PVNE-T------SVCLGGGVWRIKHHPFIPGLVLA  258 (331)
Q Consensus       230 -----------~---------------------------------~~~~-~------~~~~~~~v~~~~~~~~~~~~~~~  258 (331)
                                 .                                 ++.. .      +......+-.++|++|  ..+++
T Consensus       257 p~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D--s~y~a  334 (447)
T KOG4497|consen  257 PTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD--STYAA  334 (447)
T ss_pred             chhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC--ceEEe
Confidence                       0                                 0000 0      0001124667999999  67777


Q ss_pred             EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          259 ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +-.++--....+|+.+...+...-....+|....|.|..+        ++++ +. ....+++|.+.-
T Consensus       335 Trnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~p--------rL~v-ct-g~srLY~W~psg  392 (447)
T KOG4497|consen  335 TRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRP--------RLVV-CT-GKSRLYFWAPSG  392 (447)
T ss_pred             eecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCc--------eEEE-Ec-CCceEEEEcCCC
Confidence            7666543445555543344444445677899999999996        4444 44 367799998754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.1e-17  Score=135.27  Aligned_cols=293  Identities=13%  Similarity=0.120  Sum_probs=207.2

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      .|..|..||.-..++..|..|++|+          .|..|.+||..... +...+..+|...|..-.|.|...  ..-++
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgS----------DD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~--d~ti~  203 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGS----------DDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSG--DRTIV  203 (559)
T ss_pred             cccCCCCccceeeecccCceeeccC----------ccceEEeehhhccC-cccccccccccchhhhhccCCCC--CcCce
Confidence            4566666666666666669999998          89999999998877 44455588999999999999743  45799


Q ss_pred             EEcCCccE-EEe---------cCCCcccCccEEEEEEcCCCCe-EEEEecCCeEEEEEccccceeeeeeeec-ccc---e
Q 020107           87 QADADGGL-LRD---------ITGEKISSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQWKA-HEF---E  151 (331)
Q Consensus        87 ~~~~dg~i-iw~---------~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~---~  151 (331)
                      +++.||.+ +-.         ......|.++|.-++.-|+..+ |.+++.|+.+.-+|++.+........+. +..   .
T Consensus       204 ~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~  283 (559)
T KOG1334|consen  204 TSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG  283 (559)
T ss_pred             eccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence            99999999 222         2223347889999999997765 8999999999999999865433322222 233   5


Q ss_pred             eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce------eeeec---ccCCCcceEEEEEecCCCCEEEEEecCCeEEE
Q 020107          152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK------LAFQN---SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV  222 (331)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  222 (331)
                      ...++.+|.+.+.+++++.|..+++||.+.-...      ..+..   .......|+++.|+. ++.-|++.-.|-.|++
T Consensus       284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe~IYL  362 (559)
T KOG1334|consen  284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDEDIYL  362 (559)
T ss_pred             eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC-CccceeeeecccceEE
Confidence            7789999988889999999999999999864322      11111   001245699999997 6666777777888999


Q ss_pred             EEecCCCC--C---------ceeeeeecC--CceEEEEECCCCCCeEEEEEec-CcEEEEEEcCcccceeEEeecCCcce
Q 020107          223 WDVRSISK--P---------VNETSVCLG--GGVWRIKHHPFIPGLVLAACMH-NGFAVVKVGGEKAEVLETYAKHGSLA  288 (331)
Q Consensus       223 wd~~~~~~--~---------~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v  288 (331)
                      +.-....-  |         +.....+|.  ..|..+-|-.-. .-++++|+| +.|.+|+-  ..++.++.+.+-...|
T Consensus       363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr-sEyVvSGSDCGhIFiW~K--~t~eii~~MegDr~VV  439 (559)
T KOG1334|consen  363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR-SEYVVSGSDCGHIFIWDK--KTGEIIRFMEGDRHVV  439 (559)
T ss_pred             eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc-cceEEecCccceEEEEec--chhHHHHHhhcccceE
Confidence            95433211  1         111134553  347777765422 345555555 44444443  3367777777766699


Q ss_pred             eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      .++.=+|..|         +||++| -|.-|+||.+.+
T Consensus       440 NCLEpHP~~P---------vLAsSG-id~DVKIWTP~~  467 (559)
T KOG1334|consen  440 NCLEPHPHLP---------VLASSG-IDHDVKIWTPLT  467 (559)
T ss_pred             eccCCCCCCc---------hhhccC-CccceeeecCCc
Confidence            9999999995         999999 999999999843

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=8.7e-16  Score=120.09  Aligned_cols=221  Identities=13%  Similarity=0.074  Sum_probs=156.1

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD   91 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   91 (331)
                      ...++|++.-   ..+|++.          .|-.|++|+-....  ...+....+..|++++|-|..   ++.|++|...
T Consensus       101 lr~~aWhqH~---~~fava~----------nddvVriy~ksst~--pt~Lks~sQrnvtclawRPls---aselavgCr~  162 (445)
T KOG2139|consen  101 LRGVAWHQHI---IAFAVAT----------NDDVVRIYDKSSTC--PTKLKSVSQRNVTCLAWRPLS---ASELAVGCRA  162 (445)
T ss_pred             eeeEeechhh---hhhhhhc----------cCcEEEEeccCCCC--CceecchhhcceeEEEeccCC---cceeeeeecc
Confidence            4566777754   6788887          69999999987742  334434456779999999986   6789999999


Q ss_pred             ccEEEecCCCcc-------------------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccce
Q 020107           92 GGLLRDITGEKI-------------------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFE  151 (331)
Q Consensus        92 g~iiw~~~~~~~-------------------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~  151 (331)
                      |..+|.....-.                   ...+|+++.|++||..+++++. |..|.|||..++...++...  ..+.
T Consensus       163 gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg  240 (445)
T KOG2139|consen  163 GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGG  240 (445)
T ss_pred             eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCc
Confidence            988887643110                   1467999999999999999887 78999999999876555522  3557


Q ss_pred             eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107          152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP  231 (331)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  231 (331)
                      +.-+.|+| ++++|++++-|+..++|......-...+..   ..+.|...+|+| .|.+|+.... |.-++|.+.-..++
T Consensus       241 ~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~l---gsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~  314 (445)
T KOG2139|consen  241 FSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWIL---GSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGED  314 (445)
T ss_pred             eeeEEEcC-CCCEEEEecccceeeeehhcccceecceec---cCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCC
Confidence            88999999 889999999999999996554433333444   456899999999 7766554432 34455555432221


Q ss_pred             ceee----------------------eeecCCceEEEEECCCCCCeEEEE
Q 020107          232 VNET----------------------SVCLGGGVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       232 ~~~~----------------------~~~~~~~v~~~~~~~~~~~~~~~~  259 (331)
                      ....                      ..-..+++.+++|.|.| .++++.
T Consensus       315 ~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~  363 (445)
T KOG2139|consen  315 SVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVI  363 (445)
T ss_pred             ccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEE
Confidence            1110                      01124678999999997 444433

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.7e-16  Score=129.79  Aligned_cols=280  Identities=12%  Similarity=0.101  Sum_probs=194.2

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec--CcEeEEEEcCCCCCCCCe
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT--AGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~   84 (331)
                      .+......|..+|++.  -++|+|.|          ...|++||+....  ++.  ..|.  ..|.-.-.+.+    -..
T Consensus        49 e~p~ast~ik~s~DGq--Y~lAtG~Y----------KP~ikvydlanLS--LKF--ERhlDae~V~feiLsDD----~SK  108 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQ--YLLATGTY----------KPQIKVYDLANLS--LKF--ERHLDAEVVDFEILSDD----YSK  108 (703)
T ss_pred             CCccccceeEecCCCc--EEEEeccc----------CCceEEEEcccce--eee--eecccccceeEEEeccc----hhh
Confidence            4455667888888884  57888886          8899999999864  332  3443  33444445555    556


Q ss_pred             EEEEcCCccEEEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           85 LAQADADGGLLRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        85 l~~~~~dg~iiw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      ++.-..|..|-+....+..    .+.....++++.-.--|++++....|+-++++.|++  +..+......++++..++ 
T Consensus       109 ~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf--L~P~~~~~~~lN~v~in~-  185 (703)
T KOG2321|consen  109 SVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF--LNPFETDSGELNVVSINE-  185 (703)
T ss_pred             heEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc--ccccccccccceeeeecC-
Confidence            6666677777222111111    123344566655444466666667888899999976  677776678899999998 


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeeeecc---cCCCc-----ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCc
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNS---KIHKM-----GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPV  232 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~-----~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  232 (331)
                      -..+|++|+.+|.|..||.|.......+...   ..|..     .|+++.|+. ++-.+++|..+|.+.|||++. .+|+
T Consensus       186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa-~~pl  263 (703)
T KOG2321|consen  186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRA-SKPL  263 (703)
T ss_pred             ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEccc-CCce
Confidence            6688999999999999999987665554431   11333     399999998 799999999999999999999 4777


Q ss_pred             eeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEe
Q 020107          233 NETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATC  312 (331)
Q Consensus       233 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  312 (331)
                      ........-+|..+.|.+.+.+-.+++.....+++|+-..  ++....+. .+..+..+++-|+.         .+++++
T Consensus       264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~--Gk~~asiE-pt~~lND~C~~p~s---------Gm~f~A  331 (703)
T KOG2321|consen  264 LVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT--GKPMASIE-PTSDLNDFCFVPGS---------GMFFTA  331 (703)
T ss_pred             eecccCCccceeeecccccCCCceEEecchHHhhhccccc--CCceeecc-ccCCcCceeeecCC---------ceEEEe
Confidence            7634455668999999887545555555444445555443  45544444 45669999999998         688888


Q ss_pred             ecCCCeEEEEcC
Q 020107          313 SFYDRLLRIWMP  324 (331)
Q Consensus       313 ~~~d~~i~iW~~  324 (331)
                      - ++..+..|=+
T Consensus       332 n-e~~~m~~yyi  342 (703)
T KOG2321|consen  332 N-ESSKMHTYYI  342 (703)
T ss_pred             c-CCCcceeEEc
Confidence            7 7776655533

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=6.9e-17  Score=127.76  Aligned_cols=154  Identities=14%  Similarity=0.218  Sum_probs=131.9

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc---------------cCccEEEEEEcCCCCeEEEEecCCeE
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI---------------SSSMCLCLEWNPSATSITVGLSDGSV  129 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~---------------~~~~v~~~~~~~~~~~l~~~~~dg~i  129 (331)
                      ..+|..+.|.+..   ...|++|+.|..+ +|.+.....               |...|+++.|+|+|+.|++|+.+|.|
T Consensus        13 ~~pv~s~dfq~n~---~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v   89 (434)
T KOG1009|consen   13 HEPVYSVDFQKNS---LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV   89 (434)
T ss_pred             CCceEEEEeccCc---ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence            4579999999983   3399999999999 998765332               67889999999999999999999999


Q ss_pred             EEEEcc--------c------cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107          130 SIVSVV--------E------SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK  195 (331)
Q Consensus       130 ~i~d~~--------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  195 (331)
                      .+|...        +      ..+...+.+.+|...|..++|+| +++++++++.|..+++||+..+.....+..   |.
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d---h~  165 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDD---HE  165 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccc---cc
Confidence            999876        1      22444566778999999999998 889999999999999999999988777776   99


Q ss_pred             cceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          196 MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       196 ~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      ..+..++|.| -.+++++-+.|...+.+++..
T Consensus       166 ~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  166 HYVQGVAWDP-LNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             cccceeecch-hhhhhhhhccCcccceeeeee
Confidence            9999999999 888999999998777777654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=2.1e-16  Score=124.56  Aligned_cols=241  Identities=16%  Similarity=0.208  Sum_probs=179.4

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE-------------EEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-------------LRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIV  132 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-------------iw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  132 (331)
                      ...|..++|.-++.  ...|...+.+-.+             +|++.+......+|..++..  ...|+++-.+|.+.+|
T Consensus        55 ~~ris~l~~~~d~~--tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   55 LDRISSLLFGVDGE--TEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhheeecCCc--eeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence            35688888886642  3445444344444             55555555555566665542  3468888899999999


Q ss_pred             Eccccc--eeeeeeeecccceeEEEeeCCCCCcEEEEEcCC--CeEEEEEccCCCceeeeecccCC--------CcceEE
Q 020107          133 SVVESQ--LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--CKFSGWDIRESPFKLAFQNSKIH--------KMGVCC  200 (331)
Q Consensus       133 d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~--------~~~v~~  200 (331)
                      ..+.+.  -.++..+..+ ..+..+.-++..+..+++|+..  ..+.+||+.+.  .++|......        .-.++.
T Consensus       131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~td  207 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITD  207 (412)
T ss_pred             eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeecc
Confidence            998543  1234444443 4577777777777888889988  89999999977  4444431111        234678


Q ss_pred             EEEecCC--CCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccccee
Q 020107          201 IASIPSD--SNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVL  278 (331)
Q Consensus       201 ~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (331)
                      +.|-| .  ...|++++.-+.+++||.+.+++|+.+ +.-...+++++...|.+ ..++++-..+.+..++++.  +...
T Consensus       208 i~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~-fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~--~kl~  282 (412)
T KOG3881|consen  208 IRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQ-FDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRG--GKLL  282 (412)
T ss_pred             ceecC-CCCCceEEEEecceeEEEecCcccCcceeE-eccccCcceeeeecCCC-cEEEEecccchhheecccC--ceee
Confidence            88988 5  788999999999999999999999988 45567899999999998 6777777778877888877  4555


Q ss_pred             EE-eecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          279 ET-YAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       279 ~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      .. +.+-.+.|.++..+|..         +++++|| -|+.|||+|+++..
T Consensus       283 g~~~kg~tGsirsih~hp~~---------~~las~G-LDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  283 GCGLKGITGSIRSIHCHPTH---------PVLASCG-LDRYVRIHDIKTRK  323 (412)
T ss_pred             ccccCCccCCcceEEEcCCC---------ceEEeec-cceeEEEeecccch
Confidence            55 88899999999999998         5999999 99999999999843

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=3.1e-17  Score=130.38  Aligned_cols=199  Identities=11%  Similarity=0.042  Sum_probs=149.5

Q ss_pred             EEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeee
Q 020107          109 LCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAF  188 (331)
Q Consensus       109 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  188 (331)
                      ..++|+.+|..+++|+.||++|+|+.....  .+.....|...|.++.|+| +++.|++.+.| ..+||+.+++..+...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcch--hhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            688999999999999999999999966543  3566677899999999999 88999999999 9999999999655544


Q ss_pred             ecccCCCcceEEEEEecCCC-----CEEEEEecCCeEEEEEecCCCC----CceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107          189 QNSKIHKMGVCCIASIPSDS-----NTLLTGSYDEYLRVWDVRSISK----PVNETSVCLGGGVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  259 (331)
                      .. .........+.|+. ++     .+++.-..-+.|+.||+.....    +... ...-...|++++.+++| .+++.+
T Consensus       224 t~-~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dG-kf~AlG  299 (398)
T KOG0771|consen  224 TP-FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK-KIKRFKSISSLAVSDDG-KFLALG  299 (398)
T ss_pred             CC-cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-hhhccCcceeEEEcCCC-cEEEEe
Confidence            43 22344566777876 44     2333334556788877765433    2222 12234479999999997 677777


Q ss_pred             EecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +.++.+.+++.... ......-+.|...|+++.|+|+.         +++++.+ .|.+..+-.+.-
T Consensus       300 T~dGsVai~~~~~l-q~~~~vk~aH~~~VT~ltF~Pds---------r~~~svS-s~~~~~v~~l~v  355 (398)
T KOG0771|consen  300 TMDGSVAIYDAKSL-QRLQYVKEAHLGFVTGLTFSPDS---------RYLASVS-SDNEAAVTKLAV  355 (398)
T ss_pred             ccCCcEEEEEecee-eeeEeehhhheeeeeeEEEcCCc---------Ccccccc-cCCceeEEEEee
Confidence            78888888888775 23333344799999999999998         7999988 888888876643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=7.2e-15  Score=122.58  Aligned_cols=246  Identities=11%  Similarity=0.114  Sum_probs=156.1

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe-eecCcEeEEEEcCCCCCCCCeEEEE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR-MDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      +.+..+.++|.+   ++|+++.+         .++.|.+|+++... .+..... ........++|+|+    +++|+++
T Consensus        35 ~~~~~l~~spd~---~~lyv~~~---------~~~~i~~~~~~~~g-~l~~~~~~~~~~~p~~i~~~~~----g~~l~v~   97 (330)
T PRK11028         35 GQVQPMVISPDK---RHLYVGVR---------PEFRVLSYRIADDG-ALTFAAESPLPGSPTHISTDHQ----GRFLFSA   97 (330)
T ss_pred             CCCccEEECCCC---CEEEEEEC---------CCCcEEEEEECCCC-ceEEeeeecCCCCceEEEECCC----CCEEEEE
Confidence            456667777665   78777763         47899999997422 2322211 12335678999999    8888877


Q ss_pred             cC-CccE-EEecCCCc-c--------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccc-eee----eeeeecccce
Q 020107           89 DA-DGGL-LRDITGEK-I--------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQ-LEV----LQQWKAHEFE  151 (331)
Q Consensus        89 ~~-dg~i-iw~~~~~~-~--------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~-~~~----~~~~~~~~~~  151 (331)
                      +. ++.+ +|++.... .        ......+++++|+++++++++. ++.|.+||+++.. +..    ..... ....
T Consensus        98 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~  176 (330)
T PRK11028         98 SYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAG  176 (330)
T ss_pred             EcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCC
Confidence            64 6666 88876321 1        1234577889999999866554 7999999997632 211    01111 1234


Q ss_pred             eEEEeeCCCCCcEEEEEcC-CCeEEEEEccC--CCc--eeeeecccC---CCcceEEEEEecCCCCEEEEEe-cCCeEEE
Q 020107          152 LWATSFDVHQPHMVYTGSD-DCKFSGWDIRE--SPF--KLAFQNSKI---HKMGVCCIASIPSDSNTLLTGS-YDEYLRV  222 (331)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i  222 (331)
                      ...++|+| ++++++++.. ++.|.+||+..  ++.  ...+...+.   +......+.++| ++++++++. .++.|.+
T Consensus       177 p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v  254 (330)
T PRK11028        177 PRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISV  254 (330)
T ss_pred             CceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEE
Confidence            67899999 7777766665 89999999974  221  122221111   122344688999 888888875 4789999


Q ss_pred             EEecCCCCCceeee-eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc
Q 020107          223 WDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA  275 (331)
Q Consensus       223 wd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (331)
                      |++......+.... ..-......++++|+++.++++...++.+.+|++....+
T Consensus       255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g  308 (330)
T PRK11028        255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETG  308 (330)
T ss_pred             EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCC
Confidence            99976432222200 111234668999999844444444578899999876433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=6e-15  Score=127.60  Aligned_cols=281  Identities=12%  Similarity=0.110  Sum_probs=194.8

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+|.+++.+   ++.+..-           +..+.+|......+  ........|...+++.+++|.    ++++|+|.
T Consensus       163 ~~~I~~~~~g---e~~~i~~-----------~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn----~~~~Aa~d  224 (792)
T KOG1963|consen  163 PKSIVDNNSG---EFKGIVH-----------MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN----ERYLAAGD  224 (792)
T ss_pred             CccEEEcCCc---eEEEEEE-----------eeeEEEEEecccceeeccchhhhhhcccceeEEeccc----cceEEEec
Confidence            4566676666   6666665           77889998887431  122233446777999999999    99999999


Q ss_pred             CCccE-EEecCC-C---------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107           90 ADGGL-LRDITG-E---------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus        90 ~dg~i-iw~~~~-~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  158 (331)
                      .||.+ +|.--. .         .-|..+|.+++|+++|.+|++|+..|.+.+|.+.+++.+.   +..-..+|..+.++
T Consensus       225 ~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf---LPRLgs~I~~i~vS  301 (792)
T KOG1963|consen  225 SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF---LPRLGSPILHIVVS  301 (792)
T ss_pred             cCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc---ccccCCeeEEEEEc
Confidence            99999 886544 1         1167899999999999999999999999999999986433   33346789999999


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC--------CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI--------HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK  230 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  230 (331)
                      | ++.+.+....|..|.+....+......+.....        ..+-.+.++++| ..+.++-.+..|.|.+||+.+...
T Consensus       302 ~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~  379 (792)
T KOG1963|consen  302 P-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDST  379 (792)
T ss_pred             C-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccce
Confidence            8 778888888899999988765444333333111        245577889999 888899999999999999988533


Q ss_pred             Cceeee----ee------cCCceEEEEECCCCCCeEEEEEe--------cC---cEEEEEEcCcc--cceeEE-eecCCc
Q 020107          231 PVNETS----VC------LGGGVWRIKHHPFIPGLVLAACM--------HN---GFAVVKVGGEK--AEVLET-YAKHGS  286 (331)
Q Consensus       231 ~~~~~~----~~------~~~~v~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~--~~~~~~-~~~h~~  286 (331)
                      . ..+.    ..      +.-.++.++.+-.  +.++++..        .+   .+++|......  ..+... ...|..
T Consensus       380 i-~~~~v~~~n~~~~~~n~~v~itav~~~~~--gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~  456 (792)
T KOG1963|consen  380 I-YKLQVCDENYSDGDVNIQVGITAVARSRF--GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN  456 (792)
T ss_pred             e-eeEEEEeecccCCcceeEEeeeeehhhcc--ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc
Confidence            2 2211    11      1224667777776  44555432        12   23445544332  111222 236877


Q ss_pred             ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      .+....+.+...       ....+++| .||.++||-+.+
T Consensus       457 ~~vat~~~~~~r-------s~~~vta~-~dg~~KiW~~~~  488 (792)
T KOG1963|consen  457 AFVATIFLNPTR-------SVRCVTAS-VDGDFKIWVFTD  488 (792)
T ss_pred             eeEEEEEecCcc-------cceeEEec-cCCeEEEEEEec
Confidence            777766665542       13899999 999999999844

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=1.7e-17  Score=142.36  Aligned_cols=274  Identities=15%  Similarity=0.195  Sum_probs=198.9

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +-+|-.+|.+..+.-.|.++++|+          .|..++||..++.. .+.. .++|.+.|+.++.+..    ..++++
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgs----------dd~lvKiwS~et~~-~lAs-~rGhs~ditdlavs~~----n~~iaa  249 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGS----------DDRLVKIWSMETAR-CLAS-CRGHSGDITDLAVSSN----NTMIAA  249 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecC----------ccceeeeeeccchh-hhcc-CCCCccccchhccchh----hhhhhh
Confidence            445665666666666669999998          89999999987765 4444 4899999999999998    789999


Q ss_pred             EcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc-ccceeeeeeeec-ccceeEEEeeC
Q 020107           88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV-ESQLEVLQQWKA-HEFELWATSFD  158 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~-~~~~v~~~~~~  158 (331)
                      ++.|..| +|.+..+..      |.+.|++++|+|-.    +.+.||++++||.+ ....-....++. ....+.++.|.
T Consensus       250 aS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~  325 (1113)
T KOG0644|consen  250 ASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE  325 (1113)
T ss_pred             cccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecc
Confidence            9999999 999988754      78999999999954    77889999999987 211100011111 12345566666


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC  238 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  238 (331)
                      . ....+++++.|+.-..|.+.....         +...+.-+..+.....+.++.-.+..+++|++..+ ...+. ...
T Consensus       326 ~-~~~~f~Tgs~d~ea~n~e~~~l~~---------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~-l~g  393 (1113)
T KOG0644|consen  326 N-NGDRFLTGSRDGEARNHEFEQLAW---------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHN-LMG  393 (1113)
T ss_pred             c-cccccccccCCcccccchhhHhhh---------hccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhh-hcc
Confidence            4 677899999999998887654321         22222222222213356777778889999999986 33333 478


Q ss_pred             cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe-ecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107          239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY-AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR  317 (331)
Q Consensus       239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~  317 (331)
                      |...++.+.++|-.+...+.++.++...||++|..  .+++.+ .+ ...+.+.+|+++|         ..++... .-|
T Consensus       394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg--~pik~y~~g-h~kl~d~kFSqdg---------ts~~lsd-~hg  460 (1113)
T KOG0644|consen  394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG--IPIKHYFIG-HGKLVDGKFSQDG---------TSIALSD-DHG  460 (1113)
T ss_pred             cccceeeeeecCCCcHhhhhccCCCceEeeecccC--Ccceeeecc-cceeeccccCCCC---------ceEecCC-CCC
Confidence            99999999999998888889999999999999995  333333 34 4667788999998         4555555 567


Q ss_pred             eEEEEcCCC
Q 020107          318 LLRIWMPES  326 (331)
Q Consensus       318 ~i~iW~~~~  326 (331)
                      .++|.....
T Consensus       461 ql~i~g~gq  469 (1113)
T KOG0644|consen  461 QLYILGTGQ  469 (1113)
T ss_pred             ceEEeccCC
Confidence            888776543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=6e-15  Score=115.69  Aligned_cols=232  Identities=13%  Similarity=0.153  Sum_probs=168.4

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc------cCccEEEEEEcCCCCeEEEEecC--CeEEEEEccccc
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI------SSSMCLCLEWNPSATSITVGLSD--GSVSIVSVVESQ  138 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~  138 (331)
                      ..+..+.|+.+    ...|..|+.||.-+++......      ....|..+-|+.  .++|..+.+  ..+++++.+.+.
T Consensus         6 ~ti~~~~~Nqd----~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    6 PTINFIGFNQD----STLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             cceeeeeeccc----eeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc
Confidence            34666779988    8899999999988776654322      234455555654  455555443  458888888665


Q ss_pred             eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe--c
Q 020107          139 LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS--Y  216 (331)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~  216 (331)
                      .  +..+. ....|.++.++.   +.|+++-.+. |+|||+++.+.+..+...+.+...+.++++++ .+.+++--+  .
T Consensus        80 ~--ICe~~-fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t  151 (391)
T KOG2110|consen   80 T--ICEIF-FPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTT  151 (391)
T ss_pred             e--EEEEe-cCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCC
Confidence            4  33333 345789999875   5566665444 99999999988888877656788898888887 667777654  4


Q ss_pred             CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc--EEEEEEcCcccceeEEeec--CCcceeeee
Q 020107          217 DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG--FAVVKVGGEKAEVLETYAK--HGSLAYGAD  292 (331)
Q Consensus       217 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--h~~~v~~~~  292 (331)
                      .|.|.+||..+. +++.. ...|.+++-+++|+++|  .+++++++.+  |+++.+.+  ++.+.+|+-  -...|++++
T Consensus       152 ~GdV~l~d~~nl-~~v~~-I~aH~~~lAalafs~~G--~llATASeKGTVIRVf~v~~--G~kl~eFRRG~~~~~IySL~  225 (391)
T KOG2110|consen  152 SGDVVLFDTINL-QPVNT-INAHKGPLAALAFSPDG--TLLATASEKGTVIRVFSVPE--GQKLYEFRRGTYPVSIYSLS  225 (391)
T ss_pred             CceEEEEEcccc-eeeeE-EEecCCceeEEEECCCC--CEEEEeccCceEEEEEEcCC--ccEeeeeeCCceeeEEEEEE
Confidence            688999999986 55555 47999999999999995  4555555544  35555544  788888873  234789999


Q ss_pred             ecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      |+|+.         ++|+..| ..++|+++.++...
T Consensus       226 Fs~ds---------~~L~~sS-~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  226 FSPDS---------QFLAASS-NTETVHIFKLEKVS  251 (391)
T ss_pred             ECCCC---------CeEEEec-CCCeEEEEEecccc
Confidence            99999         6888888 89999999997654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=7.3e-16  Score=135.70  Aligned_cols=244  Identities=14%  Similarity=0.148  Sum_probs=175.7

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc---------cCccEEEEEEcC--CCCeEEEEecCCeEEEEEcc
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI---------SSSMCLCLEWNP--SATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~---------~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~  135 (331)
                      +-..+.|+|-    ...++++...-.+ +|+.+.++.         ....|..+.+-.  |..++++|+.||.|+||+--
T Consensus      1066 ~pk~~~~hpf----~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPF----EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             CCceeeecCC----CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            4567888888    7788888866666 999887654         356788888754  45679999999999999754


Q ss_pred             cc---ceeeeeeeec-------ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107          136 ES---QLEVLQQWKA-------HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP  205 (331)
Q Consensus       136 ~~---~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  205 (331)
                      ..   +.+.+..+.+       ..+.-.-+.|.... .+|+++++-..|+|||.........+..  +....|+++.-+-
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~--~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPY--GSSTLVTALSADL 1218 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeeccc--CCCccceeecccc
Confidence            32   2223333221       11222446787544 4555555588999999998766555544  2466788887766


Q ss_pred             CCCCEEEEEecCCeEEEEEecCCCC-CceeeeeecCCc--eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107          206 SDSNTLLTGSYDEYLRVWDVRSISK-PVNETSVCLGGG--VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA  282 (331)
Q Consensus       206 ~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (331)
                      ..++++++|..||.|++||.|.... ........|...  |..+.+.+.|-+.+++++.++.|++|+++....+...+..
T Consensus      1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred             cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee
Confidence            5689999999999999999998533 122334678777  9999999987677999999999999999884333333333


Q ss_pred             cCC--c-ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          283 KHG--S-LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       283 ~h~--~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      .|.  + .++++..++..         ..+|+|+ . +.|+||++....+
T Consensus      1299 ~~~~yGs~lTal~VH~ha---------piiAsGs-~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHA---------PIIASGS-A-QLIKIYSLSGEQL 1337 (1387)
T ss_pred             eccccCccceeeeeccCC---------CeeeecC-c-ceEEEEecChhhh
Confidence            333  3 58999999998         5999998 6 9999999986654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1.1e-16  Score=127.24  Aligned_cols=195  Identities=15%  Similarity=0.093  Sum_probs=144.5

Q ss_pred             eEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee
Q 020107           70 FDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL  142 (331)
Q Consensus        70 ~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  142 (331)
                      ..++|+++    +..|++++.||.+ +|+.....      .|...|.++.|+||++.|++-+.| ..+||+.+++.....
T Consensus       148 k~vaf~~~----gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGD----GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCC----CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence            57899999    8999999999999 99965433      378899999999999999999999 999999998733111


Q ss_pred             eeeecccceeEEEeeCCCCC---c--EEEEEcCCCeEEEEEccCCCceeeeecc--cCCCcceEEEEEecCCCCEEEEEe
Q 020107          143 QQWKAHEFELWATSFDVHQP---H--MVYTGSDDCKFSGWDIRESPFKLAFQNS--KIHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      .+-.........+.|+. ++   .  +++.....+.|+.||+...+.-..++..  -.....|++++.++ ++++++.|+
T Consensus       223 ~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT  300 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGT  300 (398)
T ss_pred             cCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEec
Confidence            22123344566777775 44   2  2333345567777777644321111110  01244799999999 999999999


Q ss_pred             cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      .||.|-+++..+. +.+......|...|+.+.|+|+. +.+...+++....+..+..+
T Consensus       301 ~dGsVai~~~~~l-q~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  301 MDGSVAIYDAKSL-QRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             cCCcEEEEEecee-eeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEeec
Confidence            9999999999986 44444467899999999999997 66677778888888887653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2e-16  Score=130.05  Aligned_cols=209  Identities=18%  Similarity=0.234  Sum_probs=156.1

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      .|+||..||.+..++.+|.+||+|+          .|-.+.|||.-..+ .+..+..+|...|.++.|-|...  .++++
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGS----------DD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tn--nriv~  111 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGS----------DDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTN--NRIVL  111 (758)
T ss_pred             hhccccceecceeecCCCCEEeecC----------CcceEEeecchhcc-eeeeeecccccceeEEeeeccCC--CeEEE
Confidence            5677877777777777779999999          89999999998655 78888899999999999999754  57899


Q ss_pred             EEcCCccE-EEecCCCc----------------ccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccce-e-------
Q 020107           87 QADADGGL-LRDITGEK----------------ISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQL-E-------  140 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~----------------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-~-------  140 (331)
                      +|..|..| ++|+...+                +|...|..++-.|++ ..+.++++||+|+.+|++.... .       
T Consensus       112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~  191 (758)
T KOG1310|consen  112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS  191 (758)
T ss_pred             eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence            99999999 99987521                256677788888888 5688999999999999987321 0       


Q ss_pred             eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc------------------eeeeecccCCC-------
Q 020107          141 VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF------------------KLAFQNSKIHK-------  195 (331)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------~~~~~~~~~~~-------  195 (331)
                      .+..+...--...++..+|..+.+|++|+.|-..++||.|....                  +..+.  ++|-       
T Consensus       192 ~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--p~hlkn~~gn~  269 (758)
T KOG1310|consen  192 ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--PGHLKNSQGNL  269 (758)
T ss_pred             HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--CccccCccccc
Confidence            01112223345679999999999999999999999999653110                  11111  1121       


Q ss_pred             ----cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107          196 ----MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP  231 (331)
Q Consensus       196 ----~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  231 (331)
                          ..++-+.|+| +|.-|++.-....|.++|+...+.+
T Consensus       270 ~~~~~~~t~vtfnp-NGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  270 DRYITCCTYVTFNP-NGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             ccceeeeEEEEECC-CCcEEEEeeCCeEEEEEeecCCCCc
Confidence                1256678899 7777766666678999999875443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.72  E-value=1.5e-16  Score=135.13  Aligned_cols=305  Identities=15%  Similarity=0.255  Sum_probs=216.9

Q ss_pred             eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107            4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      .++..++....+..+|.+   +-+|.++           .--+.+.|++..-.+.+-+.....-.|-.+.|+|.... ..
T Consensus        19 lsl~v~~~~~a~si~p~g---rdi~lAs-----------r~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~-~~   83 (1081)
T KOG0309|consen   19 LSLKVDGGFNAVSINPSG---RDIVLAS-----------RQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAK-PY   83 (1081)
T ss_pred             eEEEecCcccceeecccc---chhhhhh-----------hcCeEEEeccCCCCCceeeeccCcchhcceecccCCCC-ce
Confidence            456677888888888887   5666666           33577778877654555552222334889999987432 34


Q ss_pred             eEEEEcCCccEEEecCCCcc---------cCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeeeeecccceeE
Q 020107           84 FLAQADADGGLLRDITGEKI---------SSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW  153 (331)
Q Consensus        84 ~l~~~~~dg~iiw~~~~~~~---------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~  153 (331)
                      .+++.+....++|++.....         |...++.+.|+|+.+ .+++++.|-.+..||+++.. .++..+..-.....
T Consensus        84 wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~ys~~~w~s~as  162 (1081)
T KOG0309|consen   84 WIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFYSTSSWRSAAS  162 (1081)
T ss_pred             eEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-cceeeeecccccCc
Confidence            56666766777999876432         678899999999765 47888889999999999865 35555555556788


Q ss_pred             EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCce
Q 020107          154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVN  233 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  233 (331)
                      .++|+..+++.+++ +....|++||++.+...... . +.|...|+.++|+......+.+++.|++|++||..+..+...
T Consensus       163 qVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s-~-K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~  239 (1081)
T KOG0309|consen  163 QVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCS-L-KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK  239 (1081)
T ss_pred             eeeecccCcchhhh-ccCCceEEEeccCCCcceEE-e-cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence            99999766665554 55788999999987643222 1 338899999999876677899999999999999987533332


Q ss_pred             eeeeecCCceEEEEECCCCCCeEEEEEecCc-EEEEEEcCc--------ccceeEEeecCCcceeeeeecCCCCcc-ccc
Q 020107          234 ETSVCLGGGVWRIKHHPFIPGLVLAACMHNG-FAVVKVGGE--------KAEVLETYAKHGSLAYGADWQRGRSSL-EGK  303 (331)
Q Consensus       234 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~-~~~  303 (331)
                      . ......+|+.-++.|-++++++.-...+. +.+++..+.        ..+.+.+|.||...|....|-..+... ..+
T Consensus       240 ~-~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d  318 (1081)
T KOG0309|consen  240 R-TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYD  318 (1081)
T ss_pred             e-eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCC
Confidence            2 35667789999999988776655433222 222222221        166889999999999988887654210 122


Q ss_pred             ccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          304 RKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       304 ~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ...-.|+|-+ .|..+++|.+.+.++
T Consensus       319 ~rdfQLVTWS-kD~~lrlWpI~~~i~  343 (1081)
T KOG0309|consen  319 SRDFQLVTWS-KDQTLRLWPIDSQIQ  343 (1081)
T ss_pred             ccceeEEEee-cCCceEeeeccHHHH
Confidence            3345799999 999999999987654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=2.2e-15  Score=118.93  Aligned_cols=196  Identities=14%  Similarity=0.217  Sum_probs=153.3

Q ss_pred             CCCcEEEEeccCcc---cceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC--ccE-EEecCCCcc------------
Q 020107           42 RNGSISLFNVNAEE---KNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD--GGL-LRDITGEKI------------  103 (331)
Q Consensus        42 ~~g~i~vw~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--g~i-iw~~~~~~~------------  103 (331)
                      .+|.+++|..+.+.   .++..+..  ..++..|.-+|..+   .++++|+..  ..+ +|++...+.            
T Consensus       123 ~sG~l~~~~~k~~d~hss~l~~la~--g~g~~~~r~~~~~p---~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L  197 (412)
T KOG3881|consen  123 SSGNLQVRHDKSGDLHSSKLIKLAT--GPGLYDVRQTDTDP---YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL  197 (412)
T ss_pred             cCCcEEEEeccCCccccccceeeec--CCceeeeccCCCCC---ceEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence            69999999988432   12333322  25688888888743   367778887  444 999887633            


Q ss_pred             ---cCccEEEEEEcCC--CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107          104 ---SSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWD  178 (331)
Q Consensus       104 ---~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  178 (331)
                         .+-.++++.|-+.  ...|++++.-+.+++||.+.++ .|+..+.-.+.+++++...| +++.+++|..-|.+..+|
T Consensus       198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD  275 (412)
T KOG3881|consen  198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFD  275 (412)
T ss_pred             cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-cceeEeccccCcceeeeecC-CCcEEEEecccchhheec
Confidence               1344578889887  6789999999999999999765 67888887888999999998 889999999999999999


Q ss_pred             ccCCCceee-eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107          179 IRESPFKLA-FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       179 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  251 (331)
                      ++.++.... +..   ..+.|++|..+| ...+++++|-|..+||+|+++ .+++..  ......++++.+.++
T Consensus       276 ~r~~kl~g~~~kg---~tGsirsih~hp-~~~~las~GLDRyvRIhD~kt-rkll~k--vYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  276 LRGGKLLGCGLKG---ITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKT-RKLLHK--VYVKSRLTFILLRDD  342 (412)
T ss_pred             ccCceeeccccCC---ccCCcceEEEcC-CCceEEeeccceeEEEeeccc-chhhhh--hhhhccccEEEecCC
Confidence            999875544 433   789999999999 889999999999999999998 455554  444566777777654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.6e-14  Score=123.92  Aligned_cols=233  Identities=9%  Similarity=0.033  Sum_probs=152.6

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC---CccE-EEecCCCcc-----cCccEEEEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA---DGGL-LRDITGEKI-----SSSMCLCLEW  113 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---dg~i-iw~~~~~~~-----~~~~v~~~~~  113 (331)
                      ...|.++|.+...  .+.+ ..+...+...+|+|+    ++.|+..+.   +..+ +|++.+++.     ....+....|
T Consensus       178 ~~~l~~~d~dg~~--~~~l-t~~~~~~~~p~wSPD----G~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~  250 (429)
T PRK03629        178 PYELRVSDYDGYN--QFVV-HRSPQPLMSPAWSPD----GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAF  250 (429)
T ss_pred             ceeEEEEcCCCCC--CEEe-ecCCCceeeeEEcCC----CCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEE
Confidence            3478888888764  3333 335567999999999    888876543   2234 888876542     1334557899


Q ss_pred             cCCCCeEEEE-ecCC--eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-CCe--EEEEEccCCCceee
Q 020107          114 NPSATSITVG-LSDG--SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-DCK--FSGWDIRESPFKLA  187 (331)
Q Consensus       114 ~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~  187 (331)
                      +|||+.|+.. +.+|  .|.+||+.+++.   ..+..+...+....|+| +++.|+..+. ++.  |.++|+.++.. ..
T Consensus       251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~---~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~  325 (429)
T PRK03629        251 SPDGSKLAFALSKTGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAP-QR  325 (429)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCE---EEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence            9999988765 3344  588899987754   23333445678899999 6676655554 444  44446665543 33


Q ss_pred             eecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107          188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG  264 (331)
Q Consensus       188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  264 (331)
                      +..   +........|+| ++++|+..+.+   ..|.+||+.++.  ... +. .........|+|++ ..++.++.+++
T Consensus       326 lt~---~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~-Lt-~~~~~~~p~~SpDG-~~i~~~s~~~~  396 (429)
T PRK03629        326 ITW---EGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGG--VQV-LT-DTFLDETPSIAPNG-TMVIYSSSQGM  396 (429)
T ss_pred             eec---CCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCC--eEE-eC-CCCCCCCceECCCC-CEEEEEEcCCC
Confidence            333   344456789999 88888776543   358889987753  222 11 12234567899998 56666666665


Q ss_pred             EEEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107          265 FAVVKVGGEKAEVLETYAKHGSLAYGADWQRG  296 (331)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  296 (331)
                      ...+.+.+..++....+.+|.+.+...+|+|-
T Consensus       397 ~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        397 GSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             ceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence            55555555446777778888888999999984

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=2.2e-13  Score=105.03  Aligned_cols=175  Identities=14%  Similarity=0.162  Sum_probs=129.6

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc---------cCccEEEEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI---------SSSMCLCLE  112 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~---------~~~~v~~~~  112 (331)
                      ..+.+.|||=.... ++..+  ....+|.++.+.++      .|++.-.+...+|.......         .+....++.
T Consensus        73 ~pNkviIWDD~k~~-~i~el--~f~~~I~~V~l~r~------riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   73 PPNKVIIWDDLKER-CIIEL--SFNSEIKAVKLRRD------RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             CCceEEEEecccCc-EEEEE--EeccceeeEEEcCC------eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence            46789999933222 33333  35688999999998      78877766555777663211         122233333


Q ss_pred             EcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCe-EEEEEccCCCceeeeec
Q 020107          113 WNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCK-FSGWDIRESPFKLAFQN  190 (331)
Q Consensus       113 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~  190 (331)
                      -..+...||.-+ .-|+|+|-|+...+..+...+.+|...|.|++.+. ++.++|+++..|+ |||||..++..+.++..
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence            222333344433 47999999998765434567889999999999996 8999999999997 69999999998888876


Q ss_pred             ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107          191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                       ......|++|+|+| +..+|++.+..|++++|.++..
T Consensus       223 -G~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  223 -GVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             -CCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecC
Confidence             33567899999999 9999999999999999999863

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=3e-13  Score=104.32  Aligned_cols=229  Identities=12%  Similarity=0.164  Sum_probs=148.9

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC--cEeEEEEcCCCCCCCCeEEEEc
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA--GIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ...++|..+.   .-+++|.           +.-.+||+.+.-++....  ..+.+  .+..|-|-.+      +||-.+
T Consensus         8 ~lsvs~NQD~---ScFava~-----------~~Gfriyn~~P~ke~~~r--~~~~~G~~~veMLfR~N------~laLVG   65 (346)
T KOG2111|consen    8 TLSVSFNQDH---SCFAVAT-----------DTGFRIYNCDPFKESASR--QFIDGGFKIVEMLFRSN------YLALVG   65 (346)
T ss_pred             eeEEEEccCC---ceEEEEe-----------cCceEEEecCchhhhhhh--ccccCchhhhhHhhhhc------eEEEec
Confidence            4457787776   7999997           777999999875422111  12222  2444445444      555433


Q ss_pred             CCc--c-----E-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec--ccceeEE
Q 020107           90 ADG--G-----L-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA--HEFELWA  154 (331)
Q Consensus        90 ~dg--~-----i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~v~~  154 (331)
                      ..+  .     + |||-....+     -..+|.++.+.+  ..|++.-. +.|.+|...+.- +.+..+..  ......+
T Consensus        66 Gg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r--~riVvvl~-~~I~VytF~~n~-k~l~~~et~~NPkGlC~  141 (346)
T KOG2111|consen   66 GGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRR--DRIVVVLE-NKIYVYTFPDNP-KLLHVIETRSNPKGLCS  141 (346)
T ss_pred             CCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcC--CeEEEEec-CeEEEEEcCCCh-hheeeeecccCCCceEe
Confidence            222  1     1 999544433     256777777765  45555544 789999987431 22333332  2333444


Q ss_pred             EeeCCCCCcEEEE-EcCCCeEEEEEccCCCce--eeeecccCCCcceEEEEEecCCCCEEEEEecCCe-EEEEEecCCCC
Q 020107          155 TSFDVHQPHMVYT-GSDDCKFSGWDIRESPFK--LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY-LRVWDVRSISK  230 (331)
Q Consensus       155 ~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~  230 (331)
                      ++-+. +..+|+. |-.-|.|+|-|+...+..  ..+.   +|...|.|++.+- +|.++||++..|+ |||||..++ .
T Consensus       142 ~~~~~-~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~---AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g-~  215 (346)
T KOG2111|consen  142 LCPTS-NKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN---AHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDG-T  215 (346)
T ss_pred             ecCCC-CceEEEcCCCccceEEEEEhhhcCcCCceEEE---cccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCC-c
Confidence            43332 3334443 335699999999876642  3344   4999999999999 9999999999986 799999996 5


Q ss_pred             Cceeeeee-cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          231 PVNETSVC-LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       231 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      ++.++..+ ....|++++|+|+. ..+++++..++++++.+.+.
T Consensus       216 ~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  216 LLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecC
Confidence            55553333 34679999999996 66667777788899999774

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.67  E-value=8e-12  Score=104.47  Aligned_cols=280  Identities=16%  Similarity=0.170  Sum_probs=177.3

Q ss_pred             EEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-ecCcEeEEEEcCCCCCCCCeEEEEcCC----ccE-EEecCC
Q 020107           27 LAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-DTAGIFDIKWSPVGGNAGPFLAQADAD----GGL-LRDITG  100 (331)
Q Consensus        27 la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~d----g~i-iw~~~~  100 (331)
                      +.+|+|..      ...+.|++|+++.....+...... .......++++|+    +++|.+....    |.+ .+.+..
T Consensus         2 ~~vgsy~~------~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~----~~~LY~~~e~~~~~g~v~~~~i~~   71 (345)
T PF10282_consen    2 LYVGSYTN------GKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPD----GRRLYVVNEGSGDSGGVSSYRIDP   71 (345)
T ss_dssp             EEEEECCS------SSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TT----SSEEEEEETTSSTTTEEEEEEEET
T ss_pred             EEEEcCCC------CCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeC----CCEEEEEEccccCCCCEEEEEECC
Confidence            45666532      135899999996555445544332 3455788999999    8888888774    456 555544


Q ss_pred             C--cc--------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEccc-cceeeeeeee-----------cccceeEEEee
Q 020107          101 E--KI--------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVE-SQLEVLQQWK-----------AHEFELWATSF  157 (331)
Q Consensus       101 ~--~~--------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~~~~~~-----------~~~~~v~~~~~  157 (331)
                      .  ..        .......++++|++++|+++.. +|.|.++++.. +.+.......           .......++.+
T Consensus        72 ~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~  151 (345)
T PF10282_consen   72 DTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF  151 (345)
T ss_dssp             TTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred             CcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE
Confidence            2  22        2344567899999999988875 99999999987 3332221111           12245678999


Q ss_pred             CCCCCcEEEEE-cCCCeEEEEEccCCC--cee--eeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCC
Q 020107          158 DVHQPHMVYTG-SDDCKFSGWDIRESP--FKL--AFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKP  231 (331)
Q Consensus       158 ~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~  231 (331)
                      +| +++++++. -....|.+|++....  ...  .+..  ......+.+.|+| +++++++.. .++.|.++++......
T Consensus       152 ~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~  227 (345)
T PF10282_consen  152 SP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV--PPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGS  227 (345)
T ss_dssp             -T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC--STTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             CC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc--ccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCc
Confidence            99 66655554 455689999998765  211  2222  2467789999999 887775554 6788999999832222


Q ss_pred             ceee--eee----c--CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc--ceeEEeecCCcceeeeeecCCCCccc
Q 020107          232 VNET--SVC----L--GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA--EVLETYAKHGSLAYGADWQRGRSSLE  301 (331)
Q Consensus       232 ~~~~--~~~----~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~  301 (331)
                      +...  ...    .  ......|+++|+++.++++....+.|.++++....+  +.+..+.........++++|++    
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g----  303 (345)
T PF10282_consen  228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG----  303 (345)
T ss_dssp             EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS----
T ss_pred             eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC----
Confidence            2111  111    1  125788999999855666666788899999965433  3344444334457899999999    


Q ss_pred             ccccCcEEEEeecCCCeEEEEcC--CCccc
Q 020107          302 GKRKNSLVATCSFYDRLLRIWMP--ESDCL  329 (331)
Q Consensus       302 ~~~~~~~l~s~~~~d~~i~iW~~--~~~~~  329 (331)
                           ++|+.+...++.|.+|++  +++.+
T Consensus       304 -----~~l~Va~~~s~~v~vf~~d~~tG~l  328 (345)
T PF10282_consen  304 -----RYLYVANQDSNTVSVFDIDPDTGKL  328 (345)
T ss_dssp             -----SEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             -----CEEEEEecCCCeEEEEEEeCCCCcE
Confidence                 566655537889999976  45554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2.7e-14  Score=122.85  Aligned_cols=204  Identities=11%  Similarity=0.069  Sum_probs=134.1

Q ss_pred             ccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecC---CeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           92 GGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSD---GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        92 g~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      ..+ +|+......     +...+.+..|+|+|+.|+.++.+   ..|++||+.+++...+..+.++   ...++|+| ++
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-DG  259 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-DG  259 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-CC
Confidence            344 788765432     35678899999999999887653   4799999988765445444443   34689999 66


Q ss_pred             cEEEEE-cCCCeEEEE--EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeeee
Q 020107          163 HMVYTG-SDDCKFSGW--DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSVC  238 (331)
Q Consensus       163 ~~l~~~-~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~  238 (331)
                      +.|+.+ +.+|.+.||  |+.++. ...+..   +...+....|+| +++.|+..+ .++...+|++.........  ..
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~---~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~--l~  332 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGT-PSQLTS---GAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASL--VG  332 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCC-eEeecc---CCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEE--ec
Confidence            666654 467866555  655554 333433   566788999999 888766554 6788999988654333332  23


Q ss_pred             cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107          239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL  318 (331)
Q Consensus       239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~  318 (331)
                      +.+  ....|+|++ ..++..+. +.+..|++..  ++.......+  ....+.|+|++         ++|+.++ .++.
T Consensus       333 ~~~--~~~~~SpDG-~~ia~~~~-~~i~~~Dl~~--g~~~~lt~~~--~~~~~~~sPdG---------~~i~~~s-~~g~  394 (429)
T PRK01742        333 GRG--YSAQISADG-KTLVMING-DNVVKQDLTS--GSTEVLSSTF--LDESPSISPNG---------IMIIYSS-TQGL  394 (429)
T ss_pred             CCC--CCccCCCCC-CEEEEEcC-CCEEEEECCC--CCeEEecCCC--CCCCceECCCC---------CEEEEEE-cCCC
Confidence            333  567899997 44444444 5555666654  2322211222  23567899998         6899888 7888


Q ss_pred             EEEEcC
Q 020107          319 LRIWMP  324 (331)
Q Consensus       319 i~iW~~  324 (331)
                      +.+|.+
T Consensus       395 ~~~l~~  400 (429)
T PRK01742        395 GKVLQL  400 (429)
T ss_pred             ceEEEE
Confidence            887775

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=7.5e-14  Score=120.38  Aligned_cols=232  Identities=11%  Similarity=0.079  Sum_probs=147.7

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc---cE-EEecCCCcc-----cCccEEEEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG---GL-LRDITGEKI-----SSSMCLCLEW  113 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i-iw~~~~~~~-----~~~~v~~~~~  113 (331)
                      ...|.+||.+...  .+.+ ..+...+...+|+|+    ++.|+..+.++   .+ +|++.+++.     ......+.+|
T Consensus       183 ~~~l~i~D~~g~~--~~~l-t~~~~~v~~p~wSpD----g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~  255 (433)
T PRK04922        183 RYALQVADSDGYN--PQTI-LRSAEPILSPAWSPD----GKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSF  255 (433)
T ss_pred             eEEEEEECCCCCC--ceEe-ecCCCccccccCCCC----CCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceE
Confidence            3468889987653  3333 345677999999999    88888776443   34 888876543     2334457899


Q ss_pred             cCCCCeEEE-EecCC--eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCCe--EEEEEccCCCceee
Q 020107          114 NPSATSITV-GLSDG--SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDCK--FSGWDIRESPFKLA  187 (331)
Q Consensus       114 ~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~  187 (331)
                      +|+|+.|+. .+.+|  .|++||+.+++.   ..+..+.......+|+| +++.++..+ .+|.  |.++|+.+++. ..
T Consensus       256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~---~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~-~~  330 (433)
T PRK04922        256 SPDGRRLALTLSRDGNPEIYVMDLGSRQL---TRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSA-ER  330 (433)
T ss_pred             CCCCCEEEEEEeCCCCceEEEEECCCCCe---EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCe-EE
Confidence            999998754 44455  599999988754   33444444556789999 666665554 4554  66667766653 33


Q ss_pred             eecccCCCcceEEEEEecCCCCEEEEEecCC---eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107          188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG  264 (331)
Q Consensus       188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  264 (331)
                      +..   +.......+|+| +++.|+..+.++   .|.+||+.++ .+. .  ..+........|+|++..+++++...+.
T Consensus       331 lt~---~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~--Lt~~~~~~~p~~spdG~~i~~~s~~~g~  402 (433)
T PRK04922        331 LTF---QGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTG-SVR-T--LTPGSLDESPSFAPNGSMVLYATREGGR  402 (433)
T ss_pred             eec---CCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCC-CeE-E--CCCCCCCCCceECCCCCEEEEEEecCCc
Confidence            332   233455789999 888888765433   6999999764 222 2  2233345567999998333333333333


Q ss_pred             EEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107          265 FAVVKVGGEKAEVLETYAKHGSLAYGADWQR  295 (331)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  295 (331)
                      -.++.+... +.....+..+.+.+...+|+|
T Consensus       403 ~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        403 GVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             eEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            344444333 455566666667778888887

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.65  E-value=1.3e-13  Score=107.45  Aligned_cols=242  Identities=16%  Similarity=0.188  Sum_probs=165.0

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc---ceEEeEeeec------------CcEeEEEEc
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK---NLELLYRMDT------------AGIFDIKWS   75 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~---~~~~~~~~~~------------~~v~~~~~~   75 (331)
                      -+.+|.|...+   ++||+|.          .+|.|.+|.-.....   .....+..|.            ..|+.++|.
T Consensus        27 iis~vef~~~G---e~LatGd----------kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~   93 (433)
T KOG1354|consen   27 IISAVEFDHYG---ERLATGD----------KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL   93 (433)
T ss_pred             ceeeEEeeccc---ceEeecC----------CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceec
Confidence            35667776666   8999998          899999997654431   2333344443            358999999


Q ss_pred             CCCCCCCCeEEEEcCCccE-EEecCCCcc------------------------------------------cCccEEEEE
Q 020107           76 PVGGNAGPFLAQADADGGL-LRDITGEKI------------------------------------------SSSMCLCLE  112 (331)
Q Consensus        76 ~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------------------------------------------~~~~v~~~~  112 (331)
                      ++.+  ...++..+.|.++ +|.+.....                                          |.-.|.+++
T Consensus        94 ~~~n--~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS  171 (433)
T KOG1354|consen   94 DDGN--LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS  171 (433)
T ss_pred             CCCC--ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee
Confidence            8854  4567777888888 887753211                                          344578899


Q ss_pred             EcCCCCeEEEEecCCeEEEEEccccc-eeeeeeeecc-----cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc--
Q 020107          113 WNPSATSITVGLSDGSVSIVSVVESQ-LEVLQQWKAH-----EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF--  184 (331)
Q Consensus       113 ~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--  184 (331)
                      ++.|.+.++++ .|=.|.+|+++-.. .-.+..++.+     ..-|++..|+|...+.++-.+..|+|++-|+|....  
T Consensus       172 ~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd  250 (433)
T KOG1354|consen  172 VNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD  250 (433)
T ss_pred             ecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence            99888887775 45789999987521 1112223332     356889999998889999999999999999995321  


Q ss_pred             --eeeeecc---------cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC------------
Q 020107          185 --KLAFQNS---------KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG------------  241 (331)
Q Consensus       185 --~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------  241 (331)
                        ...+...         ..--..|..+.|++ +|+++++-.. -+|++||+....+|+.. ...|..            
T Consensus       251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltvk~wD~nme~~pv~t-~~vh~~lr~kLc~lYEnD  327 (433)
T KOG1354|consen  251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAKPVET-YPVHEYLRSKLCSLYEND  327 (433)
T ss_pred             chhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-ceeEEEeccccCCcceE-EeehHhHHHHHHHHhhcc
Confidence              1111110         00124578899999 9999998754 68999999877777766 233321            


Q ss_pred             ce---EEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          242 GV---WRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       242 ~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      .|   ..++|+.++ ..+++++..+-++++....
T Consensus       328 ~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  328 AIFDKFECSWSGND-SYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             chhheeEEEEcCCc-ceEecccccceEEEecCCC
Confidence            22   457888875 5667777777777777443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.65  E-value=4.6e-14  Score=107.22  Aligned_cols=149  Identities=19%  Similarity=0.273  Sum_probs=98.7

Q ss_pred             EEEEEcCCCCeEEEEec----------CCeEEEEEccccceeeeeeeec-ccceeEEEeeCCCCCcEEEE--EcCCCeEE
Q 020107          109 LCLEWNPSATSITVGLS----------DGSVSIVSVVESQLEVLQQWKA-HEFELWATSFDVHQPHMVYT--GSDDCKFS  175 (331)
Q Consensus       109 ~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~--~~~dg~i~  175 (331)
                      ..+.|+++|++|++-..          -|...+|.++.... +...+.. ..++|.+++|+| +++.|++  |..++.|.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccE
Confidence            35678888877554332          23456666644321 2333322 345799999999 5565443  44678999


Q ss_pred             EEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCC
Q 020107          176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI  252 (331)
Q Consensus       176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  252 (331)
                      +||++ .+  .....   +...+..+.|+| +|++|++++.+   |.|.+||.++. +.+..  ..|. .+..++|+|+|
T Consensus        87 lyd~~-~~--~i~~~---~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~--~~~~-~~t~~~WsPdG  155 (194)
T PF08662_consen   87 LYDVK-GK--KIFSF---GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK-KKIST--FEHS-DATDVEWSPDG  155 (194)
T ss_pred             EEcCc-cc--EeEee---cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC-EEeec--cccC-cEEEEEEcCCC
Confidence            99997 33  33333   456788999999 99999998754   66999999974 44444  3444 47899999998


Q ss_pred             CCeEEEEEe------cCcEEEEEEc
Q 020107          253 PGLVLAACM------HNGFAVVKVG  271 (331)
Q Consensus       253 ~~~~~~~~~------~~~~~~~~~~  271 (331)
                       ..++++..      ++++++|+..
T Consensus       156 -r~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  156 -RYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             -CEEEEEEeccceeccccEEEEEec
Confidence             44554443      6777777764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=6.6e-14  Score=109.72  Aligned_cols=189  Identities=17%  Similarity=0.202  Sum_probs=137.7

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCC-eEEEEecCCeEEEEEcccc-
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVES-  137 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-  137 (331)
                      -.+..++|++.    --.+|++..|-.+ +++-.....      ....|.|++|-|.+. .|++|+. +-|.+|..... 
T Consensus        99 ~dlr~~aWhqH----~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl  173 (445)
T KOG2139|consen   99 IDLRGVAWHQH----IIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL  173 (445)
T ss_pred             cceeeEeechh----hhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence            45888999997    5678888888888 887665222      367899999999654 5777777 55889987541 


Q ss_pred             ---c--------eeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107          138 ---Q--------LEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP  205 (331)
Q Consensus       138 ---~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  205 (331)
                         +        ...+....+| .+|+++.|++ ++..+++++ .|..|.|||..++...+....   ..+.++-+.|+|
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~---glgg~slLkwSP  248 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPK---GLGGFSLLKWSP  248 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCccccccc---CCCceeeEEEcC
Confidence               1        0112223445 5899999998 777777776 577899999999987766644   577889999999


Q ss_pred             CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          206 SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       206 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                       ++.+|..+.-|+..++|..........-  .-..+.|...+|+|.|..++++....-.  ++.+
T Consensus       249 -dgd~lfaAt~davfrlw~e~q~wt~erw--~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl  308 (445)
T KOG2139|consen  249 -DGDVLFAATCDAVFRLWQENQSWTKERW--ILGSGRVQTACWSPCGSFLLFACSGSPR--LYSL  308 (445)
T ss_pred             -CCCEEEEecccceeeeehhcccceecce--eccCCceeeeeecCCCCEEEEEEcCCce--EEEE
Confidence             9999999999999999966543222222  3445699999999998555555555444  4444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.65  E-value=8.6e-16  Score=123.76  Aligned_cols=224  Identities=15%  Similarity=0.182  Sum_probs=180.4

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceee
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEV  141 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  141 (331)
                      +-..+.++.+    |..|+.|+.-|.+ .+|..+.+.+     ...|.++.|-.+.+++|++ ....++|||-..-+   
T Consensus       131 GPY~~~ytrn----GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtE---  202 (545)
T KOG1272|consen  131 GPYHLDYTRN----GRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTE---  202 (545)
T ss_pred             CCeeeeecCC----ccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcE---
Confidence            4567888888    9999999999999 7777777664     4667888898887777776 45789999976544   


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEE
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLR  221 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  221 (331)
                      +..++.| ..|..+.|-| .--+|++++..|.++.-|+.+++.+..+..   ..+.+..+.-+| -...+-+|...|+|.
T Consensus       203 lHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---~~G~~~vm~qNP-~NaVih~GhsnGtVS  276 (545)
T KOG1272|consen  203 LHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRT---GAGRTDVMKQNP-YNAVIHLGHSNGTVS  276 (545)
T ss_pred             Eeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHc---cCCccchhhcCC-ccceEEEcCCCceEE
Confidence            4445544 3689999999 557889999999999999999998888877   678888999999 777899999999999


Q ss_pred             EEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCccc
Q 020107          222 VWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLE  301 (331)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  301 (331)
                      +|.... +.|+.. +..|.++|.+|++.++| .+++++|.|..++|||++..  ..+.++.. .-+...+++|..+    
T Consensus       277 lWSP~s-kePLvK-iLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~--~ql~t~~t-p~~a~~ls~Sqkg----  346 (545)
T KOG1272|consen  277 LWSPNS-KEPLVK-ILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNF--YQLHTYRT-PHPASNLSLSQKG----  346 (545)
T ss_pred             ecCCCC-cchHHH-HHhcCCCcceEEECCCC-cEEeecccccceeEeeeccc--cccceeec-CCCcccccccccc----
Confidence            999988 466665 57999999999999998 88899999999999999986  34444443 3456778888876    


Q ss_pred             ccccCcEEEEeecCCCeEEEEc
Q 020107          302 GKRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       302 ~~~~~~~l~s~~~~d~~i~iW~  323 (331)
                            +|| +| ....|.||.
T Consensus       347 ------lLA-~~-~G~~v~iw~  360 (545)
T KOG1272|consen  347 ------LLA-LS-YGDHVQIWK  360 (545)
T ss_pred             ------cee-ee-cCCeeeeeh
Confidence                  444 44 577899996

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.64  E-value=7.3e-12  Score=98.76  Aligned_cols=281  Identities=14%  Similarity=0.109  Sum_probs=186.0

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-eeecCcEeEEEEcCCCCCCCCeEEEEcCCcc---E-E--Ee
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-RMDTAGIFDIKWSPVGGNAGPFLAQADADGG---L-L--RD   97 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~---i-i--w~   97 (331)
                      ..+.+|+|...      .+.-|++|++++....+.... -.+.+.++-|+|+|+    ++.|.++..+|.   + -  ||
T Consensus         3 ~~~YiGtyT~~------~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~----~~~LY~v~~~~~~ggvaay~iD   72 (346)
T COG2706           3 QTVYIGTYTKR------ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD----QRHLYVVNEPGEEGGVAAYRID   72 (346)
T ss_pred             eEEEEeeeccc------CCCceEEEEEeCcccccchhhhccccCCCceEEECCC----CCEEEEEEecCCcCcEEEEEEc
Confidence            35666765322      377899999996543333322 235577899999999    888988877643   3 3  33


Q ss_pred             cCCCcc--------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEccc-cceeeeeeeecccce----------eEEEee
Q 020107           98 ITGEKI--------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVE-SQLEVLQQWKAHEFE----------LWATSF  157 (331)
Q Consensus        98 ~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~~~~~~~~~~~----------v~~~~~  157 (331)
                      -..+..        ...+-+.+++++++++++++.. .|.|.++-++. +.+........|.+.          +....+
T Consensus        73 ~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~  152 (346)
T COG2706          73 PDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANF  152 (346)
T ss_pred             CCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeee
Confidence            332332        2344478999999999998876 78999999966 544333333345544          888999


Q ss_pred             CCCCCcEEEEEc-CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceee
Q 020107          158 DVHQPHMVYTGS-DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       158 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~  235 (331)
                      .| +++++++.. .--.|.+|++..++....-...-......+.|.|+| ++++.+... .+++|.+|........+.++
T Consensus       153 tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~l  230 (346)
T COG2706         153 TP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEEL  230 (346)
T ss_pred             CC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence            99 777777765 345789999997765332222112467789999999 998887766 58999999998743333321


Q ss_pred             e------e--ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccccee--EEeecCCcceeeeeecCCCCccccccc
Q 020107          236 S------V--CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVL--ETYAKHGSLAYGADWQRGRSSLEGKRK  305 (331)
Q Consensus       236 ~------~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~  305 (331)
                      .      .  ........|..+|+++-+.++--..+.|.++.+....+++.  .....+...-.++.+++.+        
T Consensus       231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g--------  302 (346)
T COG2706         231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG--------  302 (346)
T ss_pred             eeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC--------
Confidence            1      1  12335677899999733333334667888899988754432  2222344446788999998        


Q ss_pred             CcEEEEeecCCCeEEEEcCCC
Q 020107          306 NSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       306 ~~~l~s~~~~d~~i~iW~~~~  326 (331)
                       ++|+.++..+..|.++.++.
T Consensus       303 -~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         303 -RFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             -CEEEEEccCCCcEEEEEEcC
Confidence             67777763556788887654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.64  E-value=4.1e-14  Score=110.14  Aligned_cols=218  Identities=10%  Similarity=0.118  Sum_probs=151.0

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEe----------cCCCcccCccEEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRD----------ITGEKISSSMCLC  110 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~----------~~~~~~~~~~v~~  110 (331)
                      .|.+++||--.+...-...+...-..+++++.+.++    ...|++|-.+|++ -+.          ++....|...+..
T Consensus        44 ~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e----~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~  119 (404)
T KOG1409|consen   44 EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE----SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSA  119 (404)
T ss_pred             ccceeeeEEeccccccCchhhhhCCCCceEeeeecc----ceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceee
Confidence            799999996544332333343334577999999999    8899999999999 222          2223347888999


Q ss_pred             EEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec
Q 020107          111 LEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN  190 (331)
Q Consensus       111 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  190 (331)
                      +-|+...+.+++.+.|..+.---.+.+..  +..+.. ....+++.+.-   .+...|...|.|.+-.+....+. .+..
T Consensus       120 ~if~~~~e~V~s~~~dk~~~~hc~e~~~~--lg~Y~~-~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~-~i~~  192 (404)
T KOG1409|consen  120 IVFSLTHEWVLSTGKDKQFAWHCTESGNR--LGGYNF-ETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQ-LITT  192 (404)
T ss_pred             EEecCCceeEEEeccccceEEEeeccCCc--ccceEe-eccCCCCceee---EEEEecccccceEEEEEeecCCc-eEEE
Confidence            99998889999999988875444443322  111110 11112222221   25566666777777666544433 3333


Q ss_pred             ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                      ..+|.+.++++.|.| ...+|.+|..|..+.+||+-..+. .......|...|..+...+.- ..+++.+.++++.+|++
T Consensus       193 ~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~m  269 (404)
T KOG1409|consen  193 FNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNM  269 (404)
T ss_pred             EcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcc-eeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEec
Confidence            366999999999999 889999999999999999987433 333367899999988887765 67888888999999988


Q ss_pred             cCc
Q 020107          271 GGE  273 (331)
Q Consensus       271 ~~~  273 (331)
                      ...
T Consensus       270 n~~  272 (404)
T KOG1409|consen  270 NVK  272 (404)
T ss_pred             cce
Confidence            653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=2.7e-13  Score=116.53  Aligned_cols=231  Identities=15%  Similarity=0.098  Sum_probs=144.8

Q ss_pred             CcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC-c--cE-EEecCCCcc-----cCccEEEEEEc
Q 020107           44 GSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD-G--GL-LRDITGEKI-----SSSMCLCLEWN  114 (331)
Q Consensus        44 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-g--~i-iw~~~~~~~-----~~~~v~~~~~~  114 (331)
                      ..|.++|.+...  ...+ ..+...+.+.+|+|+    ++.|+..+.+ +  .+ +|++.+++.     ........+|+
T Consensus       176 ~~L~~~D~dG~~--~~~l-~~~~~~v~~p~wSPD----G~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~S  248 (427)
T PRK02889        176 YQLQISDADGQN--AQSA-LSSPEPIISPAWSPD----GTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWS  248 (427)
T ss_pred             cEEEEECCCCCC--ceEe-ccCCCCcccceEcCC----CCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEEC
Confidence            457777765442  3333 346678999999999    8888776643 2  24 889877643     23445678999


Q ss_pred             CCCCeEEE-EecCCeEEEEEc--cccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEcc--CCCceeee
Q 020107          115 PSATSITV-GLSDGSVSIVSV--VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIR--ESPFKLAF  188 (331)
Q Consensus       115 ~~~~~l~~-~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~~~  188 (331)
                      |+|+.|+. .+.+|...+|.+  ..+.   ...+..+........|+| +++.++..+ .++...+|.+.  ++. ...+
T Consensus       249 PDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~l  323 (427)
T PRK02889        249 PDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGA-AQRV  323 (427)
T ss_pred             CCCCEEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCc-eEEE
Confidence            99998764 566777666654  3333   334444444566788999 666655444 45666666554  333 2233


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecCC---eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF  265 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  265 (331)
                      ..   .........|+| ++++|+..+.++   .|.+||+.++. . ..  ...........|+|++ ..++.++.+++.
T Consensus       324 t~---~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~-~-~~--lt~~~~~~~p~~spdg-~~l~~~~~~~g~  394 (427)
T PRK02889        324 TF---TGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQ-V-TA--LTDTTRDESPSFAPNG-RYILYATQQGGR  394 (427)
T ss_pred             ec---CCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCC-e-EE--ccCCCCccCceECCCC-CEEEEEEecCCC
Confidence            32   223344678999 999988776554   69999998753 2 22  1122334678999998 445555444433


Q ss_pred             E-EEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107          266 A-VVKVGGEKAEVLETYAKHGSLAYGADWQRG  296 (331)
Q Consensus       266 ~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  296 (331)
                      . ++-+.. .+.....+..+.+.+...+|+|-
T Consensus       395 ~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        395 SVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            3 333333 35666666667778888899885

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.63  E-value=5.8e-14  Score=109.36  Aligned_cols=243  Identities=16%  Similarity=0.213  Sum_probs=171.1

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----------cc------------CccEEEEEEcCCCC--eE
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----------IS------------SSMCLCLEWNPSAT--SI  120 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----------~~------------~~~v~~~~~~~~~~--~l  120 (331)
                      .-|.++.|...    |.+||+|..+|.+ ++.-....           .|            ...|..+.|.++++  .+
T Consensus        26 diis~vef~~~----Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   26 DIISAVEFDHY----GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             cceeeEEeecc----cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            45899999999    9999999999999 43322111           11            45678899998765  47


Q ss_pred             EEEecCCeEEEEEccccceee---------------------------------eeee-ecccceeEEEeeCCCCCcEEE
Q 020107          121 TVGLSDGSVSIVSVVESQLEV---------------------------------LQQW-KAHEFELWATSFDVHQPHMVY  166 (331)
Q Consensus       121 ~~~~~dg~i~i~d~~~~~~~~---------------------------------~~~~-~~~~~~v~~~~~~~~~~~~l~  166 (331)
                      +..+.|.+|++|.+.....+.                                 .+.+ .+|...|.++.++. +...++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~l  180 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFL  180 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEe
Confidence            778889999999987532111                                 0111 24778899999996 666666


Q ss_pred             EEcCCCeEEEEEccCCCceeeeecccCCC-----cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC-----Ccee--
Q 020107          167 TGSDDCKFSGWDIRESPFKLAFQNSKIHK-----MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK-----PVNE--  234 (331)
Q Consensus       167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~--  234 (331)
                      ++ +|=.|-+|.+.-......+...+++.     .-|++..|+|...+.|+-.+..|+|++-|+|....     .+.+  
T Consensus       181 SA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  181 SA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             ec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence            65 48899999997544333333223333     45899999997788899999999999999995311     1111  


Q ss_pred             -------eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc------------ce---eeee
Q 020107          235 -------TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS------------LA---YGAD  292 (331)
Q Consensus       235 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------~v---~~~~  292 (331)
                             .+...-..|..+.|+++  +.++.+-..-.+++|++... .+++.++.-|..            .|   ..++
T Consensus       260 edp~~rsffseiIsSISDvKFs~s--GryilsRDyltvk~wD~nme-~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~  336 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHS--GRYILSRDYLTVKLWDLNME-AKPVETYPVHEYLRSKLCSLYENDAIFDKFECS  336 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccC--CcEEEEeccceeEEEecccc-CCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence                   11122346888999999  55666667788999999665 566777765532            22   3578


Q ss_pred             ecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      |+-++         ..++||| .....++++++.|.
T Consensus       337 ~sg~~---------~~v~TGs-y~n~frvf~~~~gs  362 (433)
T KOG1354|consen  337 WSGND---------SYVMTGS-YNNVFRVFNLARGS  362 (433)
T ss_pred             EcCCc---------ceEeccc-ccceEEEecCCCCc
Confidence            88887         6999999 99999999977664

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=3.3e-14  Score=116.80  Aligned_cols=205  Identities=14%  Similarity=0.136  Sum_probs=151.2

Q ss_pred             CCCeEEEEecCCeEEEEEccccceeeeeee--ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC----------
Q 020107          116 SATSITVGLSDGSVSIVSVVESQLEVLQQW--KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP----------  183 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------  183 (331)
                      .+--++.|-.-|.|.+.|....+...+...  .-....|+++.|-|.+...++++-.+|.+.+||.....          
T Consensus       184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~  263 (636)
T KOG2394|consen  184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL  263 (636)
T ss_pred             CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence            455689999999999999876322111111  11246799999999888889999999999999764210          


Q ss_pred             ----c--------------eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEE
Q 020107          184 ----F--------------KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWR  245 (331)
Q Consensus       184 ----~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~  245 (331)
                          .              +..+..   -.+.|...+|+| |+.+||+.+.||.+||||+.++  .+.-.+...-+...|
T Consensus       264 k~~~~f~i~t~ksk~~rNPv~~w~~---~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~--eLlg~mkSYFGGLLC  337 (636)
T KOG2394|consen  264 KDGDQFAILTSKSKKTRNPVARWHI---GEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQ--ELLGVMKSYFGGLLC  337 (636)
T ss_pred             CCCCeeEEeeeeccccCCccceeEe---ccccccceeEcC-CCceEEEEecCceEEEeeccHH--HHHHHHHhhccceEE
Confidence                0              001111   245788999999 9999999999999999999974  333334566678999


Q ss_pred             EEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCc--------------cc----------
Q 020107          246 IKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSS--------------LE----------  301 (331)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--------------~~----------  301 (331)
                      ++|+||+ .+++++|.||-+.+|.+.+  .+++..-.+|.+.|..++|.|.--.              ..          
T Consensus       338 vcWSPDG-KyIvtGGEDDLVtVwSf~e--rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~  414 (636)
T KOG2394|consen  338 VCWSPDG-KYIVTGGEDDLVTVWSFEE--RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRAN  414 (636)
T ss_pred             EEEcCCc-cEEEecCCcceEEEEEecc--ceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccC
Confidence            9999998 7788888888888888887  5888888999999999999942100              00          


Q ss_pred             --ccc-------------cCcEEEEeecCCCeEEEEcCCCcccC
Q 020107          302 --GKR-------------KNSLVATCSFYDRLLRIWMPESDCLT  330 (331)
Q Consensus       302 --~~~-------------~~~~l~s~~~~d~~i~iW~~~~~~~~  330 (331)
                        +..             ..-.+.++| .|-++.+||+...++.
T Consensus       415 ~~~S~~~~~~s~~~~~~~v~YRfGSVG-qDTqlcLWDlteD~L~  457 (636)
T KOG2394|consen  415 GTGSAEGCPLSSFNRINSVTYRFGSVG-QDTQLCLWDLTEDVLV  457 (636)
T ss_pred             CCCCcCCCcccccccccceEEEeeccc-ccceEEEEecchhhcc
Confidence              000             123688999 9999999999877653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.62  E-value=6.9e-14  Score=123.24  Aligned_cols=193  Identities=18%  Similarity=0.176  Sum_probs=148.0

Q ss_pred             EEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc----eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107          111 LEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF----ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL  186 (331)
Q Consensus       111 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  186 (331)
                      ..+....+.++.++.+..+.+||...+..  .........    ...-+-+++ +.-++++|+.-+.|.+|+..... .+
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~--~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn-~p  168 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSV--LSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDN-KP  168 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCce--ehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccC-Cc
Confidence            44455677899999999999999987643  333332221    112233444 56789999999999999998333 33


Q ss_pred             e-eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107          187 A-FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF  265 (331)
Q Consensus       187 ~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  265 (331)
                      . +.   +|.+.|.++.++- ++.++++.++|.++|+|++.+.+... ....+|+++|+.+.|+|.   .+++.+.|-..
T Consensus       169 ~~l~---GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n---~i~t~gedctc  240 (967)
T KOG0974|consen  169 IRLK---GHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPN---RIITVGEDCTC  240 (967)
T ss_pred             ceec---ccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccc---eeEEeccceEE
Confidence            3 44   4999999999999 99999999999999999999975544 335899999999999996   67788777777


Q ss_pred             EEEEEcCcccceeEEeecCCc-ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          266 AVVKVGGEKAEVLETYAKHGS-LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ++|...   +..+..+.+|.. .+..++..++.         ..++|++ .|+.+++|++..-.
T Consensus       241 rvW~~~---~~~l~~y~~h~g~~iw~~~~~~~~---------~~~vT~g-~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  241 RVWGVN---GTQLEVYDEHSGKGIWKIAVPIGV---------IIKVTGG-NDSTLKLWDLNGRG  291 (967)
T ss_pred             EEEecc---cceehhhhhhhhcceeEEEEcCCc---------eEEEeec-cCcchhhhhhhccc
Confidence            777544   455668888754 78999999887         5899999 99999999986543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.2e-12  Score=112.97  Aligned_cols=208  Identities=16%  Similarity=0.105  Sum_probs=128.0

Q ss_pred             EEecCCCcc-----cCccEEEEEEcCCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCc-EE
Q 020107           95 LRDITGEKI-----SSSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH-MV  165 (331)
Q Consensus        95 iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l  165 (331)
                      +||......     +...+.+.+|+|+++.|+..+.   ...|.+||+.+++...+..+   .......+|+| +++ ++
T Consensus       188 i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~---~g~~~~~~~Sp-DG~~l~  263 (433)
T PRK04922        188 VADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF---RGINGAPSFSP-DGRRLA  263 (433)
T ss_pred             EECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC---CCCccCceECC-CCCEEE
Confidence            677655432     3456888999999999888764   34799999988765433333   33455789999 555 44


Q ss_pred             EEEcCCC--eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCe--EEEEEecCCCCCceeeeeecC
Q 020107          166 YTGSDDC--KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEY--LRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       166 ~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~--i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      ++.+.+|  .|++||+.+++.. .+..   +.......+|+| +++.|+..+ .++.  |.++|+..+ . ... .....
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~~~-~lt~---~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g-~-~~~-lt~~g  335 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQLT-RLTN---HFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGG-S-AER-LTFQG  335 (433)
T ss_pred             EEEeCCCCceEEEEECCCCCeE-ECcc---CCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC-C-eEE-eecCC
Confidence            5555555  6999999887633 3333   445567789999 888877766 3455  555565553 2 222 12233


Q ss_pred             CceEEEEECCCCCCeEEEEEecC--cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC--C
Q 020107          241 GGVWRIKHHPFIPGLVLAACMHN--GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY--D  316 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~--d  316 (331)
                      ......+|+|+++.++++...++  .+.+|++..  ++.. .+. +........|+|++         ++|+..+..  .
T Consensus       336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~--g~~~-~Lt-~~~~~~~p~~spdG---------~~i~~~s~~~g~  402 (433)
T PRK04922        336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST--GSVR-TLT-PGSLDESPSFAPNG---------SMVLYATREGGR  402 (433)
T ss_pred             CCccCEEECCCCCEEEEEECCCCceeEEEEECCC--CCeE-ECC-CCCCCCCceECCCC---------CEEEEEEecCCc
Confidence            44557899999844333333333  355565543  2322 333 22245567999999         566665512  2


Q ss_pred             CeEEEEcCCCc
Q 020107          317 RLLRIWMPESD  327 (331)
Q Consensus       317 ~~i~iW~~~~~  327 (331)
                      +.|.+++++..
T Consensus       403 ~~L~~~~~~g~  413 (433)
T PRK04922        403 GVLAAVSTDGR  413 (433)
T ss_pred             eEEEEEECCCC
Confidence            46788887654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=2.9e-11  Score=101.09  Aligned_cols=266  Identities=15%  Similarity=0.091  Sum_probs=156.7

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEcC
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWNP  115 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~  115 (331)
                      .+|.|.+.|..+.+ .+..+..+ ...-..+.|+|+    ++++++++.||.+ ++|+.+.+..     .....++++++
T Consensus        14 ~~~~v~viD~~t~~-~~~~i~~~-~~~h~~~~~s~D----gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~   87 (369)
T PF02239_consen   14 GSGSVAVIDGATNK-VVARIPTG-GAPHAGLKFSPD----GRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP   87 (369)
T ss_dssp             GGTEEEEEETTT-S-EEEEEE-S-TTEEEEEE-TT-----SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred             CCCEEEEEECCCCe-EEEEEcCC-CCceeEEEecCC----CCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence            58999999998875 45544332 233345779999    8999999999999 9999887752     44567899999


Q ss_pred             CCCeEEEEec-CCeEEEEEccccceeeeeeeecc-------cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceee
Q 020107          116 SATSITVGLS-DGSVSIVSVVESQLEVLQQWKAH-------EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLA  187 (331)
Q Consensus       116 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  187 (331)
                      +|++++++.. .+.+.++|.++.+.  ++.+...       ...+..+..+|....++++.-+.+.|.+.|....+....
T Consensus        88 DG~~~~v~n~~~~~v~v~D~~tle~--v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~  165 (369)
T PF02239_consen   88 DGKYVYVANYEPGTVSVIDAETLEP--VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV  165 (369)
T ss_dssp             TTTEEEEEEEETTEEEEEETTT--E--EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred             CCCEEEEEecCCCceeEeccccccc--eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence            9999988865 89999999987643  5554422       345677877774444666666678898889876654322


Q ss_pred             eecccCCCcceEEEEEecCCCCEEEEE-ecCCeEEEEEecCCCCCcee-----------eeeecC---------------
Q 020107          188 FQNSKIHKMGVCCIASIPSDSNTLLTG-SYDEYLRVWDVRSISKPVNE-----------TSVCLG---------------  240 (331)
Q Consensus       188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~-----------~~~~~~---------------  240 (331)
                      -.. . .........|+| ++++++++ ..++.|-++|.++.+.....           ....|.               
T Consensus       166 ~~i-~-~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~  242 (369)
T PF02239_consen  166 TTI-K-VGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA  242 (369)
T ss_dssp             EEE-E---TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE
T ss_pred             eee-c-ccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee
Confidence            221 1 345677889999 88877664 45667878887653211000           000111               


Q ss_pred             --------------------------CceEEEEECCCCCCeEEE---EEecCcEEEEEEcCcccceeEEeecC-Ccceee
Q 020107          241 --------------------------GGVWRIKHHPFIPGLVLA---ACMHNGFAVVKVGGEKAEVLETYAKH-GSLAYG  290 (331)
Q Consensus       241 --------------------------~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~  290 (331)
                                                +.-.-+.-+|+++..++.   .-..+.+.+++....  +.+.++... ...+..
T Consensus       243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~~~~~i~~~~~~~~~h  320 (369)
T PF02239_consen  243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--KVVKTITPGPGKRVVH  320 (369)
T ss_dssp             EEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--EEEE-HHHHHT--EEE
T ss_pred             cccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc--ceeEEEeccCCCcEec
Confidence                                      111335667776433333   123466667776663  555555422 235889


Q ss_pred             eeecCCCCcccccccCcEEEEeecCCC-eEEEEcCCCccc
Q 020107          291 ADWQRGRSSLEGKRKNSLVATCSFYDR-LLRIWMPESDCL  329 (331)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~-~i~iW~~~~~~~  329 (331)
                      +.|+++|.        ...+|.- ..+ .|.++|..+..+
T Consensus       321 ~ef~~dG~--------~v~vS~~-~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  321 MEFNPDGK--------EVWVSVW-DGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             EEE-TTSS--------EEEEEEE---TTEEEEEETTTTEE
T ss_pred             cEECCCCC--------EEEEEEe-cCCCEEEEEECCCcEE
Confidence            99999996        5555555 444 899999988654

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=4e-12  Score=109.84  Aligned_cols=232  Identities=8%  Similarity=-0.010  Sum_probs=145.9

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC---CccE-EEecCCCcc-----cCccEEEEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA---DGGL-LRDITGEKI-----SSSMCLCLEW  113 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---dg~i-iw~~~~~~~-----~~~~v~~~~~  113 (331)
                      ...|.++|.+...  .+.+ ..|...+...+|+|+    ++.|+..+.   +..+ +|++.+++.     ....+...+|
T Consensus       181 ~~~l~~~d~dg~~--~~~l-t~~~~~v~~p~wSpD----G~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~  253 (435)
T PRK05137        181 IKRLAIMDQDGAN--VRYL-TDGSSLVLTPRFSPN----RQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRF  253 (435)
T ss_pred             ceEEEEECCCCCC--cEEE-ecCCCCeEeeEECCC----CCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEE
Confidence            3478888886653  4443 457778999999999    888877654   2345 999877653     3455678899


Q ss_pred             cCCCCeEE-EEecCCe--EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCC--eEEEEEccCCCceee
Q 020107          114 NPSATSIT-VGLSDGS--VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDC--KFSGWDIRESPFKLA  187 (331)
Q Consensus       114 ~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~  187 (331)
                      +|+|+.|+ +.+.++.  |.+||+.+++.   ..+..+........|+| +++.++..+ .+|  .|.++|+..+.. ..
T Consensus       254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~---~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~  328 (435)
T PRK05137        254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTT---TRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNP-RR  328 (435)
T ss_pred             CCCCCEEEEEEecCCCceEEEEECCCCce---EEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCe-EE
Confidence            99999875 4445554  77778877654   33444555567889999 666666555 333  688888876653 33


Q ss_pred             eecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107          188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG  264 (331)
Q Consensus       188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  264 (331)
                      +..   +...+....|+| +++.|+....+   ..|.+||+....  ...  ......+....|+|+++.+++++...+.
T Consensus       329 lt~---~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~--~~~--lt~~~~~~~p~~spDG~~i~~~~~~~~~  400 (435)
T PRK05137        329 ISF---GGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSG--ERI--LTSGFLVEGPTWAPNGRVIMFFRQTPGS  400 (435)
T ss_pred             eec---CCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCCCc--eEe--ccCCCCCCCCeECCCCCEEEEEEccCCC
Confidence            333   345567788999 88888876643   367888875532  222  2223357788999998433333332222


Q ss_pred             ---EEEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107          265 ---FAVVKVGGEKAEVLETYAKHGSLAYGADWQRG  296 (331)
Q Consensus       265 ---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  296 (331)
                         ..+|.+... +.....+.. .+.+...+|+|-
T Consensus       401 ~~~~~L~~~dl~-g~~~~~l~~-~~~~~~p~Wsp~  433 (435)
T PRK05137        401 GGAPKLYTVDLT-GRNEREVPT-PGDASDPAWSPL  433 (435)
T ss_pred             CCcceEEEEECC-CCceEEccC-CCCccCcccCCC
Confidence               234444332 222334432 345667788774

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=2e-12  Score=110.23  Aligned_cols=279  Identities=13%  Similarity=0.140  Sum_probs=197.4

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-------------ceEEeEeeecCcEeEEEEcC
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-------------NLELLYRMDTAGIFDIKWSP   76 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-------------~~~~~~~~~~~~v~~~~~~~   76 (331)
                      ....|++|....   .++|+|+          .||.+++..+.+...             .+...+.+|+..|.-+.|+.
T Consensus        15 vkL~c~~WNke~---gyIAcgG----------~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe   81 (1189)
T KOG2041|consen   15 VKLHCAEWNKES---GYIACGG----------ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE   81 (1189)
T ss_pred             ceEEEEEEcccC---CeEEecc----------ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc
Confidence            345688898887   7999998          899999998865432             24456688999999999999


Q ss_pred             CCCCCCCeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec
Q 020107           77 VGGNAGPFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA  147 (331)
Q Consensus        77 ~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  147 (331)
                      .    .+.|-+...+|.| +|-+-.+.-        .++.|.+++|+.+|..++....||.|.+=.++.++. --+.+++
T Consensus        82 ~----~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg  156 (1189)
T KOG2041|consen   82 N----NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKG  156 (1189)
T ss_pred             c----cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcch
Confidence            8    8899999999999 998876543        468899999999999999999999998888776542 1223333


Q ss_pred             ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-----eeeeec---ccCCCcceEEEEEe--------cCCCCEE
Q 020107          148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-----KLAFQN---SKIHKMGVCCIASI--------PSDSNTL  211 (331)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~---~~~~~~~v~~~~~~--------~~~~~~l  211 (331)
                      .  ....+.|++ +...++.+-.+|.++++|....-.     ......   +......|..+.|.        | +...|
T Consensus       157 ~--~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p-drP~l  232 (1189)
T KOG2041|consen  157 Q--LLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP-DRPRL  232 (1189)
T ss_pred             h--eccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC-CCCEE
Confidence            2  345789998 667777788889999999764210     000100   11123336666664        3 66789


Q ss_pred             EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc------EEEEEEcCcccceeEEeecCC
Q 020107          212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG------FAVVKVGGEKAEVLETYAKHG  285 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~h~  285 (331)
                      +++-..|.+.+-.-.+...|+..   ..+-.+..+.|+++| ..++++|.+..      ...+.....-+..+.+++...
T Consensus       233 avcy~nGr~QiMR~eND~~Pvv~---dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg  308 (1189)
T KOG2041|consen  233 AVCYANGRMQIMRSENDPEPVVV---DTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPG  308 (1189)
T ss_pred             EEEEcCceehhhhhcCCCCCeEE---ecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhheEEEecCC
Confidence            99999999988766655455543   445778999999995 44444443211      113333333377888888888


Q ss_pred             cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          286 SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       286 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      ..|++++|-..+         -.+|-+-  |+.|++=++.
T Consensus       309 ~~It~lsWEg~g---------LriA~Av--dsfiyfanIR  337 (1189)
T KOG2041|consen  309 SCITGLSWEGTG---------LRIAIAV--DSFIYFANIR  337 (1189)
T ss_pred             ceeeeeEEcCCc---------eEEEEEe--cceEEEEeec
Confidence            899999998887         4566554  7776665443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.56  E-value=3.8e-12  Score=109.94  Aligned_cols=231  Identities=13%  Similarity=0.097  Sum_probs=146.2

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc---cE-EEecCCCcc-----cCccEEEEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG---GL-LRDITGEKI-----SSSMCLCLEW  113 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i-iw~~~~~~~-----~~~~v~~~~~  113 (331)
                      ...|.++|.+...  .+.+ ..+...+...+|+|+    ++.|+.+...+   .+ +|++.+++.     ....+.+++|
T Consensus       169 ~~~l~~~d~~g~~--~~~l-~~~~~~~~~p~~Spd----g~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~  241 (417)
T TIGR02800       169 RYELQVADYDGAN--PQTI-TRSREPILSPAWSPD----GQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAF  241 (417)
T ss_pred             cceEEEEcCCCCC--CEEe-ecCCCceecccCCCC----CCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEE
Confidence            4467888876543  3444 335567889999999    88888776443   44 888877643     2345667899


Q ss_pred             cCCCCeEEEE-ecCC--eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCC--eEEEEEccCCCceee
Q 020107          114 NPSATSITVG-LSDG--SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDC--KFSGWDIRESPFKLA  187 (331)
Q Consensus       114 ~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~  187 (331)
                      +|+++.|+.. +.++  .|++|++.+++.   ..+..+........|+| +++.|+..+ .++  .|.++|+.+++. ..
T Consensus       242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~  316 (417)
T TIGR02800       242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQL---TRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEV-RR  316 (417)
T ss_pred             CCCCCEEEEEECCCCCccEEEEECCCCCE---EECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCE-EE
Confidence            9999987654 4444  588889887653   23333444455678998 666665544 333  577788876653 33


Q ss_pred             eecccCCCcceEEEEEecCCCCEEEEEecCC---eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107          188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG  264 (331)
Q Consensus       188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  264 (331)
                      +..   +...+....|+| ++++++..+.++   .|.+||+.+..  ...  ...........|+|++ ..++.+...++
T Consensus       317 l~~---~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~--~~~--l~~~~~~~~p~~spdg-~~l~~~~~~~~  387 (417)
T TIGR02800       317 LTF---RGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGG--ERV--LTDTGLDESPSFAPNG-RMILYATTRGG  387 (417)
T ss_pred             eec---CCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCC--eEE--ccCCCCCCCceECCCC-CEEEEEEeCCC
Confidence            333   455677889999 888888888775   78888887632  222  1112234556899998 55666655555


Q ss_pred             EEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107          265 FAVVKVGGEKAEVLETYAKHGSLAYGADWQ  294 (331)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  294 (331)
                      ...+.+....+.....+..+.+.+...+|+
T Consensus       388 ~~~l~~~~~~g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       388 RGVLGLVSTDGRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             cEEEEEEECCCceeeECCCCCCCcCCCCCC
Confidence            444444444355555555445555555553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=1.1e-12  Score=99.66  Aligned_cols=160  Identities=19%  Similarity=0.340  Sum_probs=107.8

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE--
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA--   88 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~--   88 (331)
                      .-..+.|+|.+   ++|++-...........--|...+|.++....+...+.....++|.+++|+|+    ++.||+.  
T Consensus         7 ~~~~~~W~~~G---~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~----g~~favi~g   79 (194)
T PF08662_consen    7 DDAKLHWQPSG---DYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN----GNEFAVIYG   79 (194)
T ss_pred             ceEEEEecccC---CEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC----CCEEEEEEc
Confidence            34467788877   66665542110111111234566777755544555553334567999999999    7776554  


Q ss_pred             cCCccE-EEecCCCcc---cCccEEEEEEcCCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107           89 DADGGL-LRDITGEKI---SSSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (331)
                      ..+..+ +|++.....   +...+..+.|+|+|++|++++.   .|.|.+||.++.+  .+.... |. .++.++|+| +
T Consensus        80 ~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~~-~~-~~t~~~WsP-d  154 (194)
T PF08662_consen   80 SMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK--KISTFE-HS-DATDVEWSP-D  154 (194)
T ss_pred             cCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE--Eeeccc-cC-cEEEEEEcC-C
Confidence            345666 999975432   4667889999999999999874   4779999998653  355544 33 478999999 7


Q ss_pred             CcEEEEEcC------CCeEEEEEccCCC
Q 020107          162 PHMVYTGSD------DCKFSGWDIRESP  183 (331)
Q Consensus       162 ~~~l~~~~~------dg~i~i~d~~~~~  183 (331)
                      +++++++..      |..++||+.. |+
T Consensus       155 Gr~~~ta~t~~r~~~dng~~Iw~~~-G~  181 (194)
T PF08662_consen  155 GRYLATATTSPRLRVDNGFKIWSFQ-GR  181 (194)
T ss_pred             CCEEEEEEeccceeccccEEEEEec-Ce
Confidence            888888763      7888999986 44

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=4.4e-12  Score=109.01  Aligned_cols=206  Identities=11%  Similarity=0.106  Sum_probs=128.4

Q ss_pred             EEecCCCcc-----cCccEEEEEEcCCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEE
Q 020107           95 LRDITGEKI-----SSSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY  166 (331)
Q Consensus        95 iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  166 (331)
                      +++......     +...+.+.+|+|||+.|+..+.   +..|.+|++.+++...+..+.++   +...+|+| +++.|+
T Consensus       183 ~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SP-DG~~La  258 (429)
T PRK03629        183 VSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSP-DGSKLA  258 (429)
T ss_pred             EEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECC-CCCEEE
Confidence            666554432     3457889999999999886543   45799999988765444444433   45689999 666555


Q ss_pred             -EEcCCC--eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CCeEEEE--EecCCCCCceeeeeecC
Q 020107          167 -TGSDDC--KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DEYLRVW--DVRSISKPVNETSVCLG  240 (331)
Q Consensus       167 -~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iw--d~~~~~~~~~~~~~~~~  240 (331)
                       +.+.+|  .|.+||+.+++... +..   +...+....|+| +++.|+..+. ++...+|  |+..+  .... +....
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~~~-lt~---~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g--~~~~-lt~~~  330 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQIRQ-VTD---GRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGG--APQR-ITWEG  330 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCEEE-ccC---CCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCC--CeEE-eecCC
Confidence             445455  58899998876433 332   345678899999 8888876664 4455555  55443  2222 23344


Q ss_pred             CceEEEEECCCCCCeEEEEEec-Cc--EEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107          241 GGVWRIKHHPFIPGLVLAACMH-NG--FAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR  317 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~  317 (331)
                      .......|+|++ ..++..+.+ +.  +.++++..  ++ ...+... .......|+|++         ++|+..+ .++
T Consensus       331 ~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~--g~-~~~Lt~~-~~~~~p~~SpDG---------~~i~~~s-~~~  395 (429)
T PRK03629        331 SQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLAT--GG-VQVLTDT-FLDETPSIAPNG---------TMVIYSS-SQG  395 (429)
T ss_pred             CCccCEEECCCC-CEEEEEEccCCCceEEEEECCC--CC-eEEeCCC-CCCCCceECCCC---------CEEEEEE-cCC
Confidence            456678999998 444444433 22  34445433  22 2333321 223467899999         6788777 665


Q ss_pred             e---EEEEcCCCc
Q 020107          318 L---LRIWMPESD  327 (331)
Q Consensus       318 ~---i~iW~~~~~  327 (331)
                      .   +.+++++..
T Consensus       396 ~~~~l~~~~~~G~  408 (429)
T PRK03629        396 MGSVLNLVSTDGR  408 (429)
T ss_pred             CceEEEEEECCCC
Confidence            3   778887544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=9e-12  Score=107.69  Aligned_cols=209  Identities=15%  Similarity=0.103  Sum_probs=130.6

Q ss_pred             EEecCCCcc-----cCccEEEEEEcCCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE-E
Q 020107           95 LRDITGEKI-----SSSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM-V  165 (331)
Q Consensus        95 iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l  165 (331)
                      +++..+...     +...+.+.+|+|+|+.|+..+.   +..|.+||+.+++...   +..+...+...+|+| +++. +
T Consensus       186 ~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---l~~~~g~~~~~~~SP-DG~~la  261 (435)
T PRK05137        186 IMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---VGNFPGMTFAPRFSP-DGRKVV  261 (435)
T ss_pred             EECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---eecCCCcccCcEECC-CCCEEE
Confidence            566544432     4567899999999999887764   4689999998876433   333455677889999 5554 4


Q ss_pred             EEEcCCCe--EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CC--eEEEEEecCCCCCceeeeeecC
Q 020107          166 YTGSDDCK--FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DE--YLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       166 ~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      ++.+.++.  |.+||+.++.. ..+..   +........|+| +++.|+..+. ++  .|.++|+... . ... +....
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~~-~~Lt~---~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~-~-~~~-lt~~~  333 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGTT-TRLTD---SPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGS-N-PRR-ISFGG  333 (435)
T ss_pred             EEEecCCCceEEEEECCCCce-EEccC---CCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCC-C-eEE-eecCC
Confidence            56666654  77778887753 33333   455677899999 8888877663 33  5777787653 2 222 23345


Q ss_pred             CceEEEEECCCCCCeEEEEEec-CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC---
Q 020107          241 GGVWRIKHHPFIPGLVLAACMH-NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD---  316 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d---  316 (331)
                      +.+....|+|++ ..++....+ +...++.+... +.....+.. ...+....|+|++         ++|+..+...   
T Consensus       334 ~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~-~~~~~~lt~-~~~~~~p~~spDG---------~~i~~~~~~~~~~  401 (435)
T PRK05137        334 GRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPD-GSGERILTS-GFLVEGPTWAPNG---------RVIMFFRQTPGSG  401 (435)
T ss_pred             CcccCeEECCCC-CEEEEEEcCCCceEEEEEECC-CCceEeccC-CCCCCCCeECCCC---------CEEEEEEccCCCC
Confidence            567778999998 444444333 32334333322 222233322 2346788999998         5665544122   


Q ss_pred             --CeEEEEcCCCc
Q 020107          317 --RLLRIWMPESD  327 (331)
Q Consensus       317 --~~i~iW~~~~~  327 (331)
                        ..|.+.+++.+
T Consensus       402 ~~~~L~~~dl~g~  414 (435)
T PRK05137        402 GAPKLYTVDLTGR  414 (435)
T ss_pred             CcceEEEEECCCC
Confidence              35778887654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.54  E-value=1.3e-13  Score=106.83  Aligned_cols=218  Identities=19%  Similarity=0.183  Sum_probs=150.2

Q ss_pred             EEEEcCCCCCCCCeEEEEcCCccEEEecCCCccc-----CccEEEEEEcCCCCeEEEE-ecCCeEEEEEccccceeeeee
Q 020107           71 DIKWSPVGGNAGPFLAQADADGGLLRDITGEKIS-----SSMCLCLEWNPSATSITVG-LSDGSVSIVSVVESQLEVLQQ  144 (331)
Q Consensus        71 ~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~  144 (331)
                      -..|||+    ++++|+++.-..++.|..+.+.+     -..|.-+.|..+..+++++ ..++.|.+|++...+.  ...
T Consensus        13 ~c~fSp~----g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--~ck   86 (447)
T KOG4497|consen   13 FCSFSPC----GNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--YCK   86 (447)
T ss_pred             ceeECCC----CCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee--EEE
Confidence            3579999    99999999886669998888775     3556778899888776555 5588999999998765  556


Q ss_pred             eecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEE
Q 020107          145 WKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD  224 (331)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd  224 (331)
                      +.....++.+++|+|++.+.+.+...+-.|.+|.+.+.+.. .++.   .+..+..++|+| ++++.+..+.-.....+.
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~---pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~  161 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPH---PKTNVKGYAFHP-DGQFCAILSRRDCKDYVQ  161 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-Eecc---cccCceeEEECC-CCceeeeeecccHHHHHH
Confidence            77778889999999955578888889999999999987643 3333   345568899999 999988887532222222


Q ss_pred             ecCCC--CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccc
Q 020107          225 VRSIS--KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEG  302 (331)
Q Consensus       225 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  302 (331)
                      +...+  ..+.. +....-..+.+.|+|++ . .++        +|+---+  -.+..+. ..-.+..++|+|.+     
T Consensus       162 i~~c~~W~ll~~-f~~dT~DltgieWsPdg-~-~la--------Vwd~~Le--ykv~aYe-~~lG~k~v~wsP~~-----  222 (447)
T KOG4497|consen  162 ISSCKAWILLKE-FKLDTIDLTGIEWSPDG-N-WLA--------VWDNVLE--YKVYAYE-RGLGLKFVEWSPCN-----  222 (447)
T ss_pred             HHhhHHHHHHHh-cCCCcccccCceECCCC-c-EEE--------Eecchhh--heeeeee-eccceeEEEecccc-----
Confidence            21100  11111 22334456789999995 3 222        2322111  1111121 12467889999988     


Q ss_pred             cccCcEEEEeecCCCeEEEEc
Q 020107          303 KRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       303 ~~~~~~l~s~~~~d~~i~iW~  323 (331)
                          ++|+.|+ .|+.+|+-+
T Consensus       223 ----qflavGs-yD~~lrvln  238 (447)
T KOG4497|consen  223 ----QFLAVGS-YDQMLRVLN  238 (447)
T ss_pred             ----ceEEeec-cchhhhhhc
Confidence                7999999 999998744

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.54  E-value=1.8e-12  Score=99.02  Aligned_cols=223  Identities=15%  Similarity=0.121  Sum_probs=154.1

Q ss_pred             eecCcceeEeeecCCCCCc-EEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec------CcEeEEEEcCCCC
Q 020107            7 ELDGNADAVEFCPQDSYHH-VLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT------AGIFDIKWSPVGG   79 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~-~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~   79 (331)
                      .-...+..+.|+-...++. .|+-+-          ..|.|.+|........  ..+++-.      ..-.++.|++.  
T Consensus        67 ~dts~~~dm~w~~~~~~g~~~l~~a~----------a~G~i~~~r~~~~~ss--~~L~~ls~~ki~~~~~lslD~~~~--  132 (339)
T KOG0280|consen   67 TDTSTEFDMLWRIRETDGDFNLLDAH----------ARGQIQLYRNDEDESS--VHLRGLSSKKISVVEALSLDISTS--  132 (339)
T ss_pred             ecccccceeeeeeccCCccceeeecc----------ccceEEEEeeccceee--eeecccchhhhhheeeeEEEeecc--
Confidence            3344566677776655555 344443          6999999988765421  1111111      12457889998  


Q ss_pred             CCCCeEEEEcCCccE---------EEecCCCcccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeeeeccc
Q 020107           80 NAGPFLAQADADGGL---------LRDITGEKISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHE  149 (331)
Q Consensus        80 ~~~~~l~~~~~dg~i---------iw~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  149 (331)
                        +..++++..+|.+         +-..++-+.|.-++...+|+... +.+++|+.|+.+.-||++..+.-.....+.|.
T Consensus       133 --~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~  210 (339)
T KOG0280|consen  133 --GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT  210 (339)
T ss_pred             --CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeee
Confidence              8889999999988         44455566788889989987644 57899999999999999954322233356788


Q ss_pred             ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107          150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      ..|.++.-+|..+.++++|+.|-.|++||.|+. +++..-.    -.+.|..+.++|.....++.++.-.-.+|-+....
T Consensus       211 ~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  211 SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK  286 (339)
T ss_pred             cceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc----cccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence            999999999888999999999999999999954 3333322    36889999999965555555555555788888764


Q ss_pred             CCC---ceeeeeecCCceEEEEEC
Q 020107          229 SKP---VNETSVCLGGGVWRIKHH  249 (331)
Q Consensus       229 ~~~---~~~~~~~~~~~v~~~~~~  249 (331)
                      ...   .......|.+-++.-.|.
T Consensus       287 ~~e~~~~~~s~~~hdSl~YG~DWd  310 (339)
T KOG0280|consen  287 VLEFQIVLPSDKIHDSLCYGGDWD  310 (339)
T ss_pred             ccchheeeeccccccceeeccccc
Confidence            333   222234555555666663

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.52  E-value=3.4e-12  Score=99.66  Aligned_cols=245  Identities=13%  Similarity=0.145  Sum_probs=185.8

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC-Ccc-------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG-EKI-------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~-~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      ...++|.+.|++...-|.    ..-+.+.+.|.++ +|--.. ++.       -+.++.++++.++...|++|-..|++.
T Consensus        18 ~~~eG~~d~vn~~~l~~~----e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPK----EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhcCchhhhhhheeccC----CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            345788889999999998    7789999999999 775433 332       368899999999999999999999999


Q ss_pred             EEEccc--cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC
Q 020107          131 IVSVVE--SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS  208 (331)
Q Consensus       131 i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  208 (331)
                      -+.+..  ++....+.+..|...+..+-|+. ....+++.+.|..+.---.+.+.....+..    ....+++.+.-   
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~----~~~~t~~~~d~---  165 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNF----ETPASALQFDA---  165 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEe----eccCCCCceee---
Confidence            988765  34445667778999999999996 778899999888876555555544333332    12222333322   


Q ss_pred             CEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce
Q 020107          209 NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA  288 (331)
Q Consensus       209 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  288 (331)
                      .+...|...|.|..-.+......+...+.+|.+++.+++|.|.. ++++++..+..+.+|++-.. ......+.+|...|
T Consensus       166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~-~g~~~el~gh~~kV  243 (404)
T KOG1409|consen  166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGR-KGTAYELQGHNDKV  243 (404)
T ss_pred             EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCC-cceeeeeccchhhh
Confidence            15666767777777777654455555578999999999999975 77778778888899999876 34455677899999


Q ss_pred             eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ..+...+.-         +.+.+++ .||.|.+|+++...
T Consensus       244 ~~l~~~~~t---------~~l~S~~-edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  244 QALSYAQHT---------RQLISCG-EDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhhhhhh---------eeeeecc-CCCeEEEEecccee
Confidence            999888776         7899999 99999999997653

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.50  E-value=1.9e-11  Score=102.04  Aligned_cols=200  Identities=20%  Similarity=0.222  Sum_probs=152.1

Q ss_pred             CCeEEEEcCCccE-EEecCCCccc---------CccEEEEEEc------C--------------CCCeEEEEecCCeEEE
Q 020107           82 GPFLAQADADGGL-LRDITGEKIS---------SSMCLCLEWN------P--------------SATSITVGLSDGSVSI  131 (331)
Q Consensus        82 ~~~l~~~~~dg~i-iw~~~~~~~~---------~~~v~~~~~~------~--------------~~~~l~~~~~dg~i~i  131 (331)
                      ..++|....||.+ +|+....+.+         .+.+.+..|.      |              +...++-|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            6799999999999 9999887763         3344444442      2              2336888889999999


Q ss_pred             EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107          132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      |+...++......-..|.+.|.++.++. +-..|.+++.|+.+..|+.........+..   ....+.+++++| ++..+
T Consensus        85 ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~-D~~~l  159 (541)
T KOG4547|consen   85 YSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISP-DGKIL  159 (541)
T ss_pred             EEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcC-CCCEE
Confidence            9999987654444467999999999985 778999999999999999999887778877   678899999999 89999


Q ss_pred             EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC-----CCCeEEEEEecCcEEEEEEcCcc--cceeEEeecC
Q 020107          212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF-----IPGLVLAACMHNGFAVVKVGGEK--AEVLETYAKH  284 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h  284 (331)
                      ++++  +.|++||+.+. + +...+.+|.++|.++.|--.     |...+-....+..+.+|.+....  ......+...
T Consensus       160 ~~as--~~ik~~~~~~k-e-vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~  235 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIETK-E-VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVP  235 (541)
T ss_pred             Eecc--ceEEEEEccCc-e-EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccC
Confidence            9987  78999999984 3 33447999999999999876     43445555567777788876632  2333444433


Q ss_pred             Ccceee
Q 020107          285 GSLAYG  290 (331)
Q Consensus       285 ~~~v~~  290 (331)
                      ..+|+.
T Consensus       236 dipv~~  241 (541)
T KOG4547|consen  236 DIPVTS  241 (541)
T ss_pred             CCCeEe
Confidence            334433

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=3e-11  Score=104.54  Aligned_cols=230  Identities=11%  Similarity=0.076  Sum_probs=139.9

Q ss_pred             cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC-c--cE-EEecCCCcc-----cCccEEEEEEcC
Q 020107           45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD-G--GL-LRDITGEKI-----SSSMCLCLEWNP  115 (331)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-g--~i-iw~~~~~~~-----~~~~v~~~~~~~  115 (331)
                      .|.++|.+...  ...+ ..+...+....|+|+    ++.|+..+.+ +  .+ +|++.+++.     ....+....|+|
T Consensus       180 ~l~~~d~~g~~--~~~l-~~~~~~~~~p~wSpD----G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp  252 (430)
T PRK00178        180 TLQRSDYDGAR--AVTL-LQSREPILSPRWSPD----GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP  252 (430)
T ss_pred             EEEEECCCCCC--ceEE-ecCCCceeeeeECCC----CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC
Confidence            47777777653  3333 345667899999999    8888765543 3  34 788876543     123445689999


Q ss_pred             CCCeEEE-EecCC--eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEE-EEcCCC--eEEEEEccCCCceeeee
Q 020107          116 SATSITV-GLSDG--SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY-TGSDDC--KFSGWDIRESPFKLAFQ  189 (331)
Q Consensus       116 ~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~  189 (331)
                      +|+.|+. ...+|  .|.++|+.+++..   .+..+........|+| +++.++ +...++  .|.++|+.+++.. .+.
T Consensus       253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~---~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt  327 (430)
T PRK00178        253 DGSKLAFVLSKDGNPEIYVMDLASRQLS---RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVT  327 (430)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCCeE---EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-Eee
Confidence            9998774 44444  6888899877542   3333444566788999 555554 443444  5777788776633 232


Q ss_pred             cccCCCcceEEEEEecCCCCEEEEEecC-C--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec-CcE
Q 020107          190 NSKIHKMGVCCIASIPSDSNTLLTGSYD-E--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH-NGF  265 (331)
Q Consensus       190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~  265 (331)
                      .   .........|+| +++.++..+.+ +  .|.++|+.++..  ..  ...........|+|++ ..++.+... +..
T Consensus       328 ~---~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~--~~--lt~~~~~~~p~~spdg-~~i~~~~~~~g~~  398 (430)
T PRK00178        328 F---VGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSV--RI--LTDTSLDESPSVAPNG-TMLIYATRQQGRG  398 (430)
T ss_pred             c---CCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCCCE--EE--ccCCCCCCCceECCCC-CEEEEEEecCCce
Confidence            2   122334578999 88888776643 3  578889887432  22  1122223356899998 444444433 333


Q ss_pred             EEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107          266 AVVKVGGEKAEVLETYAKHGSLAYGADWQRG  296 (331)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  296 (331)
                      .++.+... +.....+..+.+.+...+|+|-
T Consensus       399 ~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        399 VLMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            34444333 4444455555667778888874

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.47  E-value=6.1e-09  Score=87.26  Aligned_cols=256  Identities=14%  Similarity=0.131  Sum_probs=157.7

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee--cCcEeEEEEcCCCCCCCCeEEE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD--TAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      ..+..++++|..   ++|.+.....      ..+|.|..|++......+..+....  ......++++|+    +++|++
T Consensus        37 ~~Ps~l~~~~~~---~~LY~~~e~~------~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~----g~~l~v  103 (345)
T PF10282_consen   37 ENPSWLAVSPDG---RRLYVVNEGS------GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD----GRFLYV  103 (345)
T ss_dssp             SSECCEEE-TTS---SEEEEEETTS------STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT----SSEEEE
T ss_pred             CCCceEEEEeCC---CEEEEEEccc------cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC----CCEEEE
Confidence            345556666555   7777776110      1378999999987632444443333  234668999999    888888


Q ss_pred             EcC-CccE-EEecCCC-c-------------------ccCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccc--eeee
Q 020107           88 ADA-DGGL-LRDITGE-K-------------------ISSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQ--LEVL  142 (331)
Q Consensus        88 ~~~-dg~i-iw~~~~~-~-------------------~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~~~~  142 (331)
                      +.. +|.+ ++++... .                   .......++.|+|+++++++... ...|.+|++....  +...
T Consensus       104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~  183 (345)
T PF10282_consen  104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPV  183 (345)
T ss_dssp             EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEE
T ss_pred             EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEe
Confidence            875 6666 6665542 1                   11345678999999998877654 6689999998754  4333


Q ss_pred             eeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc--CCCc--eeeeeccc---CCCcceEEEEEecCCCCEEEEE
Q 020107          143 QQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR--ESPF--KLAFQNSK---IHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       143 ~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      ..+. ......+.++|+|+.....++.-.++.|.++++.  .+..  ...+...+   ........|.++| ++++|++.
T Consensus       184 ~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvs  262 (345)
T PF10282_consen  184 DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVS  262 (345)
T ss_dssp             EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEE
T ss_pred             eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEE
Confidence            3332 2345678999999444445666678899999998  3321  11122111   0122678999999 88887776


Q ss_pred             e-cCCeEEEEEecCCCCCceee--eeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEE
Q 020107          215 S-YDEYLRVWDVRSISKPVNET--SVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLET  280 (331)
Q Consensus       215 ~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  280 (331)
                      . .++.|.+|++......+...  ..........++++|++ .+++++. ..+.+.++++...++.+...
T Consensus       263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence            5 56789999995432223221  12224458999999998 4455444 66788899987665555444

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.46  E-value=2.5e-10  Score=105.78  Aligned_cols=280  Identities=15%  Similarity=0.155  Sum_probs=179.8

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEE----eccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLF----NVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      +.+-++.|.+..   +.++++.          .+|.|.+.    +.....  +..+ ..-..+|.+++||||    +++|
T Consensus        76 ~~ivs~~yl~d~---~~l~~~~----------~~Gdi~~~~~~~~~~~~~--~E~V-G~vd~GI~a~~WSPD----~Ell  135 (928)
T PF04762_consen   76 DKIVSFQYLADS---ESLCIAL----------ASGDIILVREDPDPDEDE--IEIV-GSVDSGILAASWSPD----EELL  135 (928)
T ss_pred             CcEEEEEeccCC---CcEEEEE----------CCceEEEEEccCCCCCce--eEEE-EEEcCcEEEEEECCC----cCEE
Confidence            346666777766   5666665          69999999    444432  4443 445678999999999    8999


Q ss_pred             EEEcCCccE-----EEecC-----------------------CCccc--------------------------CccEEEE
Q 020107           86 AQADADGGL-----LRDIT-----------------------GEKIS--------------------------SSMCLCL  111 (331)
Q Consensus        86 ~~~~~dg~i-----iw~~~-----------------------~~~~~--------------------------~~~v~~~  111 (331)
                      +..+.++++     -|+.-                       ..+.|                          ...-..+
T Consensus       136 a~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~I  215 (928)
T PF04762_consen  136 ALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRI  215 (928)
T ss_pred             EEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEE
Confidence            999999888     11110                       00000                          1123568


Q ss_pred             EEcCCCCeEEEEec---C---CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC---CCeEEEEEccCC
Q 020107          112 EWNPSATSITVGLS---D---GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD---DCKFSGWDIRES  182 (331)
Q Consensus       112 ~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~  182 (331)
                      +|..||+++|+.+-   .   ..++||+-+ |.+...  ...-.+--.+++|.| .+++|++...   ...|.+|. |+|
T Consensus       216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st--SE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfE-rNG  290 (928)
T PF04762_consen  216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST--SEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFE-RNG  290 (928)
T ss_pred             EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec--cccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEe-cCC
Confidence            89999999998875   2   578999976 443222  222233345789999 8898888764   34455555 445


Q ss_pred             Cceeeeecc-cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee-eeeecCCceEEEEECCCCCCeEEEEE
Q 020107          183 PFKLAFQNS-KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE-TSVCLGGGVWRIKHHPFIPGLVLAAC  260 (331)
Q Consensus       183 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~  260 (331)
                      -....|... ......|..+.|++ ++..||.--.|. |.+|-..+-.=-+++ +.......+..+.|+|..+..+.+.+
T Consensus       291 LrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t  368 (928)
T PF04762_consen  291 LRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT  368 (928)
T ss_pred             cEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence            445555552 13567899999999 999999987665 999988874211222 11223344556999998877777777


Q ss_pred             ecCcEEEEEEc----Ccc------cceeEEee-----------------------cCCcceeeeeecCCCCcccccccCc
Q 020107          261 MHNGFAVVKVG----GEK------AEVLETYA-----------------------KHGSLAYGADWQRGRSSLEGKRKNS  307 (331)
Q Consensus       261 ~~~~~~~~~~~----~~~------~~~~~~~~-----------------------~h~~~v~~~~~~~~~~~~~~~~~~~  307 (331)
                      ..+.+..+++.    ...      ...+..+.                       .-...|.+++|+++.         .
T Consensus       369 ~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~---------~  439 (928)
T PF04762_consen  369 SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN---------S  439 (928)
T ss_pred             cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC---------C
Confidence            65666554432    110      00111111                       124578999999998         3


Q ss_pred             EEEEeecCCCeEEEEcCCC
Q 020107          308 LVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       308 ~l~s~~~~d~~i~iW~~~~  326 (331)
                      .++... .||.|.+|....
T Consensus       440 ~~avl~-~d~~l~~~~~~~  457 (928)
T PF04762_consen  440 RFAVLT-SDGSLSIYEWDL  457 (928)
T ss_pred             eEEEEE-CCCCEEEEEecC
Confidence            577777 799999998544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=7.2e-11  Score=102.02  Aligned_cols=231  Identities=10%  Similarity=0.086  Sum_probs=136.9

Q ss_pred             cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC-Ccc--E-EEecCCCcc-----cCccEEEEEEcC
Q 020107           45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA-DGG--L-LRDITGEKI-----SSSMCLCLEWNP  115 (331)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~--i-iw~~~~~~~-----~~~~v~~~~~~~  115 (331)
                      .|.++|.+...  .+.+ ..+...+....|+|+    ++.|+..+. ++.  + ++++.+++.     .........|+|
T Consensus       199 ~l~i~d~dG~~--~~~l-~~~~~~~~~p~wSPD----G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP  271 (448)
T PRK04792        199 QLMIADYDGYN--EQML-LRSPEPLMSPAWSPD----GRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP  271 (448)
T ss_pred             EEEEEeCCCCC--ceEe-ecCCCcccCceECCC----CCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC
Confidence            56666766653  3333 345667889999999    887776543 333  3 777766543     123345689999


Q ss_pred             CCCeEEE-EecCCe--EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEE-EEcCCC--eEEEEEccCCCceeeee
Q 020107          116 SATSITV-GLSDGS--VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY-TGSDDC--KFSGWDIRESPFKLAFQ  189 (331)
Q Consensus       116 ~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~  189 (331)
                      +|+.|+. ...+|.  |.++|+.+++.   ..+..+.......+|+| +++.++ +...++  .|.++|+.+++.. .+.
T Consensus       272 DG~~La~~~~~~g~~~Iy~~dl~tg~~---~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt  346 (448)
T PRK04792        272 DGKKLALVLSKDGQPEIYVVDIATKAL---TRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVS-RLT  346 (448)
T ss_pred             CCCEEEEEEeCCCCeEEEEEECCCCCe---EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EEe
Confidence            9998765 455664  77778877654   33333444567789999 555554 444444  4666677766533 332


Q ss_pred             cccCCCcceEEEEEecCCCCEEEEEec-CC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107          190 NSKIHKMGVCCIASIPSDSNTLLTGSY-DE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFA  266 (331)
Q Consensus       190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  266 (331)
                      .   .........|+| ++++|+..+. ++  .|.++|+.++.  ... +... .......|+|++..+++++..++.-.
T Consensus       347 ~---~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~--~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~  418 (448)
T PRK04792        347 F---EGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLETGA--MQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQV  418 (448)
T ss_pred             c---CCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCCCC--eEE-ccCC-CCCCCceECCCCCEEEEEEecCCceE
Confidence            2   222234578999 8888777654 34  35556766542  222 1111 12234579999844444443333333


Q ss_pred             EEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107          267 VVKVGGEKAEVLETYAKHGSLAYGADWQRG  296 (331)
Q Consensus       267 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  296 (331)
                      ++-+. ..+.....+..+.+.+...+|+|-
T Consensus       419 l~~~~-~~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        419 LAAVS-IDGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EEEEE-CCCCceEECcCCCCCcCCCccCCC
Confidence            33333 236666667666667788888874

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3.3e-11  Score=103.72  Aligned_cols=181  Identities=12%  Similarity=-0.024  Sum_probs=114.2

Q ss_pred             CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC---CCeEEEEEccCCCceeeeecccCCCcceEEEEE
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD---DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIAS  203 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  203 (331)
                      ..|.++|.....   ...+..+...+.+.+|+| +++.|+..+.   ...|.+||+.+++... +..   ....+....|
T Consensus       176 ~~L~~~D~dG~~---~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~---~~g~~~~~~~  247 (427)
T PRK02889        176 YQLQISDADGQN---AQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VAN---FKGSNSAPAW  247 (427)
T ss_pred             cEEEEECCCCCC---ceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eec---CCCCccceEE
Confidence            467777765432   233445667889999999 6677766553   2469999999886433 332   3445678999


Q ss_pred             ecCCCCEEE-EEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107          204 IPSDSNTLL-TGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA  282 (331)
Q Consensus       204 ~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (331)
                      +| +++.|+ +.+.++...+|.+......... +..+.+......|+|++..+++++...+...+|.+....+. ...+.
T Consensus       248 SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt  324 (427)
T PRK02889        248 SP-DGRTLAVALSRDGNSQIYTVNADGSGLRR-LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVT  324 (427)
T ss_pred             CC-CCCEEEEEEccCCCceEEEEECCCCCcEE-CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEe
Confidence            99 887775 5677888777776532233333 23445556778999998444444333355667777543222 22222


Q ss_pred             cCCcceeeeeecCCCCcccccccCcEEEEeecCCC---eEEEEcCCCcc
Q 020107          283 KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR---LLRIWMPESDC  328 (331)
Q Consensus       283 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~---~i~iW~~~~~~  328 (331)
                      .+.......+|+|++         ++|+..+ .++   .|.+||++++.
T Consensus       325 ~~g~~~~~~~~SpDG---------~~Ia~~s-~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        325 FTGSYNTSPRISPDG---------KLLAYIS-RVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             cCCCCcCceEECCCC---------CEEEEEE-ccCCcEEEEEEECCCCC
Confidence            222334467899999         6777666 443   69999998764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.3e-09  Score=90.74  Aligned_cols=264  Identities=14%  Similarity=0.191  Sum_probs=164.6

Q ss_pred             CCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc-------CCc
Q 020107           20 QDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD-------ADG   92 (331)
Q Consensus        20 ~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-------~dg   92 (331)
                      .++.|+++|.+.           +..++|++.....  ...  ......++++.|+|-    +.+|.+--       ...
T Consensus        42 ~S~~G~lfA~~~-----------~~~v~i~~~~~~~--~~l--t~~~~~~~~L~fSP~----g~yL~T~e~~~i~~~~~~  102 (566)
T KOG2315|consen   42 YSNNGRLFAYSD-----------NQVVKVFEIATLK--VVL--CVELKKTYDLLFSPK----GNYLLTWEPWAIYGPKNA  102 (566)
T ss_pred             EcCCCcEEEEEc-----------CCeEEEEEccCCc--EEE--Eeccceeeeeeeccc----ccccccccccccccCCCC
Confidence            344458999997           8999999998875  211  222237899999998    67776521       111


Q ss_pred             cE----EEecCCCcc----------------------------------------------cCccEEEEEEcCCCC--eE
Q 020107           93 GL----LRDITGEKI----------------------------------------------SSSMCLCLEWNPSAT--SI  120 (331)
Q Consensus        93 ~i----iw~~~~~~~----------------------------------------------~~~~v~~~~~~~~~~--~l  120 (331)
                      ..    +|++.+...                                              +...+..+.++|...  .+
T Consensus       103 ~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~v  182 (566)
T KOG2315|consen  103 SNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFV  182 (566)
T ss_pred             CCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceE
Confidence            11    666655211                                              233445555665422  12


Q ss_pred             EE-----EecCCeEEEEEcccccee---eeeeeecccceeEEEeeCCCCCcEEEEEcC-----------CCeEEEEEccC
Q 020107          121 TV-----GLSDGSVSIVSVVESQLE---VLQQWKAHEFELWATSFDVHQPHMVYTGSD-----------DCKFSGWDIRE  181 (331)
Q Consensus       121 ~~-----~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~  181 (331)
                      |+     .+.-+.|++|........   ..+.|-  ...=-.+.|++....+|+.++.           ..++++.++..
T Consensus       183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g  260 (566)
T KOG2315|consen  183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG  260 (566)
T ss_pred             EEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence            22     123445666665521110   111111  1112367788644445544432           24788888874


Q ss_pred             CCceeeeecccCCCcceEEEEEecCCCCEEEE--EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107          182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT--GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  259 (331)
                      ..+...+.    ..++|.++.|+| ++.-+++  |-+--++.|||++.  .++.   .-..++=+++-|+|.+ .+++.+
T Consensus       261 ~s~~V~L~----k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~--~~v~---df~egpRN~~~fnp~g-~ii~lA  329 (566)
T KOG2315|consen  261 ESVSVPLL----KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRG--KPVF---DFPEGPRNTAFFNPHG-NIILLA  329 (566)
T ss_pred             ceEEEecC----CCCCceEEEECC-CCCEEEEEEecccceEEEEcCCC--CEeE---eCCCCCccceEECCCC-CEEEEe
Confidence            33333333    488999999999 7766555  44667899999985  4554   3456778899999998 666666


Q ss_pred             Eec---CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec-----CCCeEEEEcCCCcc
Q 020107          260 CMH---NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF-----YDRLLRIWMPESDC  328 (331)
Q Consensus       260 ~~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-----~d~~i~iW~~~~~~  328 (331)
                      |..   +.+.+||+.+  .+++..+..-.  -+-++|+|+|         ++++|+..     .|+.++||+.....
T Consensus       330 GFGNL~G~mEvwDv~n--~K~i~~~~a~~--tt~~eW~PdG---------e~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  330 GFGNLPGDMEVWDVPN--RKLIAKFKAAN--TTVFEWSPDG---------EYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             ecCCCCCceEEEeccc--hhhccccccCC--ceEEEEcCCC---------cEEEEEeccccEEecCCeEEEEecCce
Confidence            654   5678898887  47777776543  3568999999         68888874     47899999986543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.41  E-value=1.7e-10  Score=87.44  Aligned_cols=245  Identities=11%  Similarity=0.074  Sum_probs=160.6

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCC-CCCCeEEEEcCCccE-EEecCCCcccCc----cEEEEEEcC
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGG-NAGPFLAQADADGGL-LRDITGEKISSS----MCLCLEWNP  115 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~l~~~~~dg~i-iw~~~~~~~~~~----~v~~~~~~~  115 (331)
                      ....+-+|++.+..+.+..++       ..|.|-|..- +.-.+||.|+..|.. +|...+.+.|-.    ....+....
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~  122 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK  122 (344)
T ss_pred             ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence            466788888887764555554       3355555310 004589999999999 999998776522    112222211


Q ss_pred             ----CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeec
Q 020107          116 ----SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQN  190 (331)
Q Consensus       116 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~  190 (331)
                          ..-.+..++.|.++++.+++.+.........  .-.+.++++++ ++.++++.++...|..|.+..... +..+..
T Consensus       123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~--~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~  199 (344)
T KOG4532|consen  123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ--NLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYE  199 (344)
T ss_pred             hhcccccceeeccCCcceeEEEEecCcccceeecc--ccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEe
Confidence                1223677788899999888765332222121  12378999998 889999999999999999976442 212222


Q ss_pred             ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee---eeecCCceEEEEECCCCC-CeEEEEEecCcEE
Q 020107          191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET---SVCLGGGVWRIKHHPFIP-GLVLAACMHNGFA  266 (331)
Q Consensus       191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~  266 (331)
                       ....+.-.+..|+. ....+|++..||++.|||+|....|..+.   ...|.+.+..+.|++.+. .+|+.+-.-+.+.
T Consensus       200 -a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h  277 (344)
T KOG4532|consen  200 -APTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH  277 (344)
T ss_pred             -cccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence             33455667889998 88899999999999999999976665442   245889999999998653 3455555556778


Q ss_pred             EEEEcCcccceeEE-----eecCC-cceeeeeecCCCC
Q 020107          267 VVKVGGEKAEVLET-----YAKHG-SLAYGADWQRGRS  298 (331)
Q Consensus       267 ~~~~~~~~~~~~~~-----~~~h~-~~v~~~~~~~~~~  298 (331)
                      +.++++...-.+..     +..|. ..|++..|+.++.
T Consensus       278 v~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~  315 (344)
T KOG4532|consen  278 VVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE  315 (344)
T ss_pred             EEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence            88887742111111     11232 3477788887764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=1.5e-11  Score=102.30  Aligned_cols=190  Identities=13%  Similarity=0.168  Sum_probs=142.6

Q ss_pred             eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCcc
Q 020107           14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGG   93 (331)
Q Consensus        14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~   93 (331)
                      .+.++..+  .+++.+|+           ...|+-++++.+.  +..-+....++++++..++.    ..+|++|+.+|.
T Consensus       138 Dm~y~~~s--cDly~~gs-----------g~evYRlNLEqGr--fL~P~~~~~~~lN~v~in~~----hgLla~Gt~~g~  198 (703)
T KOG2321|consen  138 DMKYHKPS--CDLYLVGS-----------GSEVYRLNLEQGR--FLNPFETDSGELNVVSINEE----HGLLACGTEDGV  198 (703)
T ss_pred             cccccCCC--ccEEEeec-----------CcceEEEEccccc--cccccccccccceeeeecCc----cceEEecccCce
Confidence            34444333  36777776           6678888888774  33333445688999999999    779999999999


Q ss_pred             E-EEecCCCcc------------c-----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           94 L-LRDITGEKI------------S-----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        94 i-iw~~~~~~~------------~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      + .||......            +     ...|+++.|+.+|-.+++|+.+|.+.|||+++.++. +..-.+...+|..+
T Consensus       199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-~~kdh~~e~pi~~l  277 (703)
T KOG2321|consen  199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-LVKDHGYELPIKKL  277 (703)
T ss_pred             EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-eecccCCccceeee
Confidence            9 999875432            1     234899999999999999999999999999987642 22233456788999


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      .|.+.+..--+...+...++|||-.+++....+..    ...++.+++-| ++.+++++-.+..+..|=+...
T Consensus       278 ~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp----t~~lND~C~~p-~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  278 DWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP----TSDLNDFCFVP-GSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             cccccCCCceEEecchHHhhhcccccCCceeeccc----cCCcCceeeec-CCceEEEecCCCcceeEEcccc
Confidence            99875433333344578899999999987666654    56699999999 8889999988888887776653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.41  E-value=2.7e-10  Score=95.40  Aligned_cols=191  Identities=13%  Similarity=0.093  Sum_probs=122.4

Q ss_pred             CeEE-EEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc
Q 020107          118 TSIT-VGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM  196 (331)
Q Consensus       118 ~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  196 (331)
                      ++++ +-..+|.|.+.|..+.+.  +..+......-..+.++| +++++++++.||.|.++|+.+.+.+..+..    ..
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~   78 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKV--VARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKV----GG   78 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SE--EEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-----SS
T ss_pred             cEEEEEecCCCEEEEEECCCCeE--EEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEec----CC
Confidence            3443 445689999999988754  677765444445577898 788888889999999999999998888876    55


Q ss_pred             ceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeeee------cCCceEEEEECCCCCCeEEEEEe-cCcEEEE
Q 020107          197 GVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSVC------LGGGVWRIKHHPFIPGLVLAACM-HNGFAVV  268 (331)
Q Consensus       197 ~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~  268 (331)
                      ....+++++ ++++++++. .++.+.++|.++. +++..+...      ...++..+..+|.. ..++++-. .+.+.++
T Consensus        79 ~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vV  155 (369)
T PF02239_consen   79 NPRGIAVSP-DGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVV  155 (369)
T ss_dssp             EEEEEEE---TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEE
T ss_pred             CcceEEEcC-CCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEE
Confidence            678899999 998888765 6899999999985 555542211      23467788888886 43444444 3554444


Q ss_pred             EEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          269 KVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       269 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +..+. ..+..+.........+..|.|++         ++++.+.+.+..|-++|.+++.
T Consensus       156 dy~d~-~~~~~~~i~~g~~~~D~~~dpdg---------ry~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  156 DYSDP-KNLKVTTIKVGRFPHDGGFDPDG---------RYFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             ETTTS-SCEEEEEEE--TTEEEEEE-TTS---------SEEEEEEGGGTEEEEEETTTTE
T ss_pred             Eeccc-cccceeeecccccccccccCccc---------ceeeecccccceeEEEeeccce
Confidence            44443 22222233334566789999998         5665554478899999988764

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=3.9e-10  Score=96.80  Aligned_cols=239  Identities=12%  Similarity=0.008  Sum_probs=134.3

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe---EEEEcCCccE---EEecCCCcc-----cCccEEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF---LAQADADGGL---LRDITGEKI-----SSSMCLCL  111 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~dg~i---iw~~~~~~~-----~~~~v~~~  111 (331)
                      ...|.+.|.+...  .+.+ ......+..-+|+|+    ++.   +++...+|..   +.++.+++.     ........
T Consensus       164 ~~~l~~~d~dG~~--~~~l-t~~~~~~~sP~wSPD----G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p  236 (428)
T PRK01029        164 QGELWSVDYDGQN--LRPL-TQEHSLSITPTWMHI----GSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMP  236 (428)
T ss_pred             cceEEEEcCCCCC--ceEc-ccCCCCcccceEccC----CCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccce
Confidence            3467777777654  3333 223445677899999    654   3355556554   556655432     13344567


Q ss_pred             EEcCCCCeEEEEec-CC----eEEEEEccccce-eeeeeeecccceeEEEeeCCCCCcEEEE-EcCCCeEEEEE--ccC-
Q 020107          112 EWNPSATSITVGLS-DG----SVSIVSVVESQL-EVLQQWKAHEFELWATSFDVHQPHMVYT-GSDDCKFSGWD--IRE-  181 (331)
Q Consensus       112 ~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~d--~~~-  181 (331)
                      +|+|||+.|+..+. +|    .+..|++..+.. ................+|+| +++.|+. ...+|...+|.  +.. 
T Consensus       237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~  315 (428)
T PRK01029        237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPE  315 (428)
T ss_pred             EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECccc
Confidence            89999998876653 23    344467664211 11222222223446789999 6665554 44566555554  432 


Q ss_pred             CCceeeeecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEE
Q 020107          182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLA  258 (331)
Q Consensus       182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  258 (331)
                      +.....+..   +...+....|+| +++.|+..+.+   ..|.+||+.+++ . .. +......+....|+|++..++++
T Consensus       316 g~~~~~lt~---~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~-~-~~-Lt~~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        316 GQSPRLLTK---KYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGR-D-YQ-LTTSPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             ccceEEecc---CCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCC-e-EE-ccCCCCCccceEECCCCCEEEEE
Confidence            222333333   345677889999 88888776543   468999998753 2 22 12233456789999997444444


Q ss_pred             EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107          259 ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                      +...+...+|.+.-..++ ...+....+.+...+|+|..
T Consensus       389 ~~~~g~~~L~~vdl~~g~-~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        389 AGNSNESELYLISLITKK-TRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             ECCCCCceEEEEECCCCC-EEEeecCCCcccCceecCCC
Confidence            433333334433332223 23333334556678888754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.38  E-value=3.1e-12  Score=109.40  Aligned_cols=208  Identities=20%  Similarity=0.241  Sum_probs=152.8

Q ss_pred             CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee-cccceeEEEeeCCCC--CcEEEEEcCCCeEEEEEccC
Q 020107          105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK-AHEFELWATSFDVHQ--PHMVYTGSDDCKFSGWDIRE  181 (331)
Q Consensus       105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~  181 (331)
                      ...+..+..+|.|+-++.++.-|. .+.|+...-. +.+-+. ...-.|-.+.|+|+.  +..+++. ....-.+|++..
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~-ppr~l~h~tpw~vad~qws~h~a~~~wiVst-s~qkaiiwnlA~  100 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFT-PPRWLHHITPWQVADVQWSPHPAKPYWIVST-SNQKAIIWNLAK  100 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCe-EEEeccCCCC-CceeeeccCcchhcceecccCCCCceeEEec-Ccchhhhhhhhc
Confidence            345667888899998998888764 4567765321 122221 112236677888753  2344444 455566899875


Q ss_pred             CCce-eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE
Q 020107          182 SPFK-LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC  260 (331)
Q Consensus       182 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  260 (331)
                      .... ..+.. -+|...|+.+.|+|+.+..+++++-|-.+..||+++...|+... ..-...-..++|+... ..+++++
T Consensus       101 ss~~aIef~l-hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-~~w~s~asqVkwnyk~-p~vlass  177 (1081)
T KOG0309|consen  101 SSSNAIEFVL-HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-SSWRSAASQVKWNYKD-PNVLASS  177 (1081)
T ss_pred             CCccceEEEE-ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-ecccccCceeeecccC-cchhhhc
Confidence            4432 22333 45999999999999999999999999999999999988888773 3444567789999876 4456666


Q ss_pred             ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          261 MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ..+.+.+|+.+.. ..++..+++|...|++++|.....        ..+.+++ .|++|++||.++..
T Consensus       178 hg~~i~vwd~r~g-s~pl~s~K~~vs~vn~~~fnr~~~--------s~~~s~~-~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  178 HGNDIFVWDLRKG-STPLCSLKGHVSSVNSIDFNRFKY--------SEIMSSS-NDGTVKFWDYSKST  235 (1081)
T ss_pred             cCCceEEEeccCC-CcceEEecccceeeehHHHhhhhh--------hhhcccC-CCCceeeecccccc
Confidence            6777889999887 778889999999999999988654        6788999 99999999987653

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.38  E-value=1.2e-10  Score=97.39  Aligned_cols=199  Identities=14%  Similarity=0.097  Sum_probs=146.8

Q ss_pred             CCCCeEEEEecCCeEEEEEccccceeeeeeee-cccceeEEEeeC------C-------------CCCcEEEEEcCCCeE
Q 020107          115 PSATSITVGLSDGSVSIVSVVESQLEVLQQWK-AHEFELWATSFD------V-------------HQPHMVYTGSDDCKF  174 (331)
Q Consensus       115 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~i  174 (331)
                      |...++|....||.+++|+...++......-. .-.+..++..|.      |             .+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            44568999999999999999887642211111 112333444442      2             134578889999999


Q ss_pred             EEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCC
Q 020107          175 SGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPG  254 (331)
Q Consensus       175 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  254 (331)
                      .+|+...++....+.. ..|.+.|.++.++. +-..|.+++.|+.+..|+.... + +..........+.+++.+||+ .
T Consensus        83 ~~ys~~~g~it~~~st-~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~-~-~~~~~~~~~~~~~sl~is~D~-~  157 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLST-DKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEK-V-IIRIWKEQKPLVSSLCISPDG-K  157 (541)
T ss_pred             EEEEecCCeEEEEEec-CCCCCcceeeeccc-ccCceEecCCceeEEEEecccc-e-eeeeeccCCCccceEEEcCCC-C
Confidence            9999999987666665 55999999999988 8889999999999999999873 3 333356777789999999996 5


Q ss_pred             eEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          255 LVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      .+++++  ..+++|++..  .+.+.+|.||.++|..+.|--+-.   +.....+|.+.. .+.-+.+|-++.
T Consensus       158 ~l~~as--~~ik~~~~~~--kevv~~ftgh~s~v~t~~f~~~~~---g~~G~~vLssa~-~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIET--KEVVITFTGHGSPVRTLSFTTLID---GIIGKYVLSSAA-AERGITVWVVEK  221 (541)
T ss_pred             EEEecc--ceEEEEEccC--ceEEEEecCCCcceEEEEEEEecc---ccccceeeeccc-cccceeEEEEEc
Confidence            555543  5688999988  599999999999999999987700   001114555666 778888998765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=2.4e-11  Score=107.60  Aligned_cols=179  Identities=16%  Similarity=0.213  Sum_probs=135.2

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC---cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA---GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG  100 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~  100 (331)
                      ..++.++          .++.+.+|+..... .+..+......   ...-+-++++    .-++++|+.-+.+ +|....
T Consensus       100 k~i~l~~----------~~ns~~i~d~~~~~-~~~~i~~~er~~l~~~~~~g~s~~----~~~i~~gsv~~~iivW~~~~  164 (967)
T KOG0974|consen  100 KKIALVT----------SRNSLLIRDSKNSS-VLSKIQSDERCTLYSSLIIGDSAE----ELYIASGSVFGEIIVWKPHE  164 (967)
T ss_pred             ceEEEEE----------cCceEEEEecccCc-eehhcCCCceEEEEeEEEEeccCc----EEEEEeccccccEEEEeccc
Confidence            4566666          58899999988764 22222111111   1223334555    6689999988888 898764


Q ss_pred             Ccc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107          101 EKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKF  174 (331)
Q Consensus       101 ~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  174 (331)
                      .+.      |.+.|.++.|+.+|.++++.+.|.++++|++++.+... ...-+|...+..++|.| +  .+++++.|.+.
T Consensus       165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~-n--~i~t~gedctc  240 (967)
T KOG0974|consen  165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLP-N--RIITVGEDCTC  240 (967)
T ss_pred             cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEecc-c--eeEEeccceEE
Confidence            332      68899999999999999999999999999999876433 34557999999999998 3  89999999999


Q ss_pred             EEEEccCCCceeeeecccCC-CcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          175 SGWDIRESPFKLAFQNSKIH-KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       175 ~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      ++|+....+ ...+..   | ...|..++..+ +...++|++.|+.+++||+..
T Consensus       241 rvW~~~~~~-l~~y~~---h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  241 RVWGVNGTQ-LEVYDE---HSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEecccce-ehhhhh---hhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence            999766433 334443   5 45689999988 888999999999999999865

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.36  E-value=9.5e-10  Score=95.09  Aligned_cols=195  Identities=13%  Similarity=0.088  Sum_probs=120.0

Q ss_pred             CccEEEEEEcCCCCeEEEEecC---CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE-EEEcCCC--eEEEEE
Q 020107          105 SSMCLCLEWNPSATSITVGLSD---GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV-YTGSDDC--KFSGWD  178 (331)
Q Consensus       105 ~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg--~i~i~d  178 (331)
                      ...+...+|+|+++.|+.+..+   ..|++||+.+++...+   ..+...+.+++|+| +++.| ++.+.++  .|++||
T Consensus       189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---ASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---ecCCCCccceEECC-CCCEEEEEECCCCCccEEEEE
Confidence            4457888999999998887653   4799999988754333   23444566789999 55544 5555544  588899


Q ss_pred             ccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCe
Q 020107          179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGL  255 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  255 (331)
                      +.++... .+..   +........|+| +++.|+..+. ++  .|.++|+... . ... +..+...+....|+|++ ..
T Consensus       265 ~~~~~~~-~l~~---~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~-~-~~~-l~~~~~~~~~~~~spdg-~~  335 (417)
T TIGR02800       265 LDGKQLT-RLTN---GPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGG-E-VRR-LTFRGGYNASPSWSPDG-DL  335 (417)
T ss_pred             CCCCCEE-ECCC---CCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCC-C-EEE-eecCCCCccCeEECCCC-CE
Confidence            8876533 3332   444456778999 8887776554 33  5777777653 2 222 23455667788999997 44


Q ss_pred             EEEEEecC---cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC---eEEEEcCCC
Q 020107          256 VLAACMHN---GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR---LLRIWMPES  326 (331)
Q Consensus       256 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~---~i~iW~~~~  326 (331)
                      ++.+..++   .+.++++..  +. ...+... .......|+|++         ++|+..+ .++   .+++.+.+.
T Consensus       336 i~~~~~~~~~~~i~~~d~~~--~~-~~~l~~~-~~~~~p~~spdg---------~~l~~~~-~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       336 IAFVHREGGGFNIAVMDLDG--GG-ERVLTDT-GLDESPSFAPNG---------RMILYAT-TRGGRGVLGLVSTDG  398 (417)
T ss_pred             EEEEEccCCceEEEEEeCCC--CC-eEEccCC-CCCCCceECCCC---------CEEEEEE-eCCCcEEEEEEECCC
Confidence            55544443   344444443  22 2223322 234456899998         5666665 333   455555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.35  E-value=7.7e-12  Score=116.39  Aligned_cols=190  Identities=12%  Similarity=0.225  Sum_probs=143.4

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      ++..|.....+|...+.++|+          .||.|++|....++ ++......-+..|+.+.|+..    |..+..+..
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs----------~dgsv~~~~w~~~~-~v~~~rt~g~s~vtr~~f~~q----Gnk~~i~d~ 2271 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGS----------QDGSVRMFEWGHGQ-QVVCFRTAGNSRVTRSRFNHQ----GNKFGIVDG 2271 (2439)
T ss_pred             ccCceeeecCCCCCceEEecC----------CCceEEEEeccCCC-eEEEeeccCcchhhhhhhccc----CCceeeecc
Confidence            444444444444446778887          79999999988776 455554445577999999999    889999999


Q ss_pred             CccE-EEecCC-----CcccCccEEEEEEcCCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107           91 DGGL-LRDITG-----EKISSSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        91 dg~i-iw~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (331)
                      ||.+ +|....     .++|+.....+.|-.  ..+++++.   ++.+.+||..-........ ..|.+.++++++.| .
T Consensus      2272 dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P-~ 2347 (2439)
T KOG1064|consen 2272 DGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAP-K 2347 (2439)
T ss_pred             CCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcC-c
Confidence            9999 998874     456777778888865  55666543   7899999976533222222 78999999999999 7


Q ss_pred             CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107          162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      .++|++|+++|.|++||++..+....++.            ++  ...+|++|+..|.|+||++... ..+..
T Consensus      2348 ~qllisggr~G~v~l~D~rqrql~h~~~~------------~~--~~~~f~~~ss~g~ikIw~~s~~-~ll~~ 2405 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQRQLRHTFQA------------LD--TREYFVTGSSEGNIKIWRLSEF-GLLHT 2405 (2439)
T ss_pred             ceEEEecCCcCcEEEeehHHHHHHHHhhh------------hh--hhheeeccCcccceEEEEcccc-chhhc
Confidence            79999999999999999998765544442            23  4678999999999999999875 44443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=1.2e-09  Score=94.57  Aligned_cols=200  Identities=13%  Similarity=0.096  Sum_probs=117.0

Q ss_pred             CccEEEEEEcCCCCeEEEEec-C--CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE-EEEcCCCe--EEEEE
Q 020107          105 SSMCLCLEWNPSATSITVGLS-D--GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV-YTGSDDCK--FSGWD  178 (331)
Q Consensus       105 ~~~v~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~--i~i~d  178 (331)
                      ...+.+..|+|||+.|+..+. +  ..|.++|+.+++...+..+.+   .....+|+| +++.| ++.+.++.  |.++|
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSP-DGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECC-CCCEEEEEEeCCCCeEEEEEE
Confidence            456778999999999887654 3  368889998876544433332   334789999 55544 45566664  77788


Q ss_pred             ccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCe
Q 020107          179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGL  255 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  255 (331)
                      +.+++. ..+..   +........|+| +++.|+..+ .++  .|.++|+.++ + ... +..........+|+|+++.+
T Consensus       293 l~tg~~-~~lt~---~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g-~-~~~-Lt~~g~~~~~~~~SpDG~~l  364 (448)
T PRK04792        293 IATKAL-TRITR---HRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASG-K-VSR-LTFEGEQNLGGSITPDGRSM  364 (448)
T ss_pred             CCCCCe-EECcc---CCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC-C-EEE-EecCCCCCcCeeECCCCCEE
Confidence            887653 33333   455667889999 887776655 344  4555566553 2 222 11222334457999998444


Q ss_pred             EEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe--EEEEcCCCc
Q 020107          256 VLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL--LRIWMPESD  327 (331)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~--i~iW~~~~~  327 (331)
                      +++....+...+|.+.-..++. ..+... .......|+|++         +.|+..+..++.  |++++.+..
T Consensus       365 ~~~~~~~g~~~I~~~dl~~g~~-~~lt~~-~~d~~ps~spdG---------~~I~~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLETGAM-QVLTST-RLDESPSVAPNG---------TMVIYSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             EEEEecCCceEEEEEECCCCCe-EEccCC-CCCCCceECCCC---------CEEEEEEecCCceEEEEEECCCC
Confidence            4443334445565554332332 223322 122345799998         455544414443  677776543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=1.2e-11  Score=115.18  Aligned_cols=192  Identities=15%  Similarity=0.250  Sum_probs=149.0

Q ss_pred             eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEc
Q 020107           63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSV  134 (331)
Q Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  134 (331)
                      +.+-..|.+|.=+|.    ..+.++|+.||.+ +|....++.       .+..|+.+.|+.+|+.+..+..||.+.+|..
T Consensus      2205 k~~v~~v~r~~sHp~----~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPS----DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             ecccCceeeecCCCC----CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc
Confidence            345567899998998    7799999999999 777665443       2477888999999999999999999999998


Q ss_pred             cccceeeeeeeecccceeEEEeeCCCCCcEEEEEc---CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107          135 VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS---DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      . .  .+....+.|.....++.|-.   ..+++++   .++.+.+||..-......+.  ..|.+.++++++.| ...+|
T Consensus      2281 ~-p--k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qll 2351 (2439)
T KOG1064|consen 2281 S-P--KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLL 2351 (2439)
T ss_pred             C-C--cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEE
Confidence            7 2  45778889999999999874   5666655   57899999987544322222  34999999999999 99999


Q ss_pred             EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107          212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA  282 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (331)
                      ++|+.+|.|++||++.. +..+. +..         +.  .+..++.+...+.++||++...  ..+.++.
T Consensus      2352 isggr~G~v~l~D~rqr-ql~h~-~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~--~ll~~~p 2407 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQR-QLRHT-FQA---------LD--TREYFVTGSSEGNIKIWRLSEF--GLLHTFP 2407 (2439)
T ss_pred             EecCCcCcEEEeehHHH-HHHHH-hhh---------hh--hhheeeccCcccceEEEEcccc--chhhcCc
Confidence            99999999999999973 33333 111         34  2277888888999999999874  5555544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.31  E-value=1.3e-10  Score=90.00  Aligned_cols=240  Identities=15%  Similarity=0.216  Sum_probs=162.6

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----------cc------------CccEEEEEEcCCCC--e
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----------IS------------SSMCLCLEWNPSAT--S  119 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----------~~------------~~~v~~~~~~~~~~--~  119 (331)
                      ...|+++.|...    |.+|++|...|.+ ++.-....           .|            ...|..+.|..++.  .
T Consensus        26 ad~ItaVefd~t----g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          26 ADKITAVEFDET----GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             cceeeEEEeccc----cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            356999999999    8999999999998 54433221           11            34577888876553  4


Q ss_pred             EEEEecCCeEEEEEcccccee----------------------------------------eeeee-ecccceeEEEeeC
Q 020107          120 ITVGLSDGSVSIVSVVESQLE----------------------------------------VLQQW-KAHEFELWATSFD  158 (331)
Q Consensus       120 l~~~~~dg~i~i~d~~~~~~~----------------------------------------~~~~~-~~~~~~v~~~~~~  158 (331)
                      ++..+.|.+|++|.+....++                                        +.+.+ ..|...+.++.++
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence            778888999999998653100                                        00011 3466778899998


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC-----cceEEEEEecCCCCEEEEEecCCeEEEEEecCCC----
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK-----MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS----  229 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----  229 (331)
                      . +...++++ .|-.|.+|++.-......+...++|.     .-|++..|+|...+.+.-.+..|.|++-|+|...    
T Consensus       182 s-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn  259 (460)
T COG5170         182 S-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN  259 (460)
T ss_pred             C-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence            6 65555554 58889999998655433333334454     3589999999777788888889999999999532    


Q ss_pred             -CCcee---------eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCC------------cc
Q 020107          230 -KPVNE---------TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHG------------SL  287 (331)
Q Consensus       230 -~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~  287 (331)
                       ..+.+         .+......|..+.|+++  +.++.+-....+++|++... ..++.+..-|.            ..
T Consensus       260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~n--gryIlsRdyltvkiwDvnm~-k~pikTi~~h~~l~~~l~d~YEnDa  336 (460)
T COG5170         260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDN--GRYILSRDYLTVKIWDVNMA-KNPIKTIPMHCDLMDELNDVYENDA  336 (460)
T ss_pred             chhhhhhccCcccchhHHHHhhhhcceEEcCC--CcEEEEeccceEEEEecccc-cCCceeechHHHHHHHHHhhhhccc
Confidence             11111         11122346888999999  66677777888999999876 56666665442            23


Q ss_pred             ee---eeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          288 AY---GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       288 v~---~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                      |.   .+.|+-+.         ..+++|+ .....-++-.
T Consensus       337 ifdkFeisfSgd~---------~~v~sgs-y~NNfgiyp~  366 (460)
T COG5170         337 IFDKFEISFSGDD---------KHVLSGS-YSNNFGIYPT  366 (460)
T ss_pred             eeeeEEEEecCCc---------ccccccc-cccceeeecc
Confidence            32   46777776         5788887 7776666654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.29  E-value=1.8e-08  Score=77.63  Aligned_cols=198  Identities=13%  Similarity=0.157  Sum_probs=117.6

Q ss_pred             EEEEEEcCCCCeEEEEecCCeEEEEEccccceeee---eeee-cccceeEEEeeCCCC-----CcEEEEEcCCCeEEEEE
Q 020107          108 CLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL---QQWK-AHEFELWATSFDVHQ-----PHMVYTGSDDCKFSGWD  178 (331)
Q Consensus       108 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~-~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~i~d  178 (331)
                      =..++|+||+..||.+...|+|++||+.....-.+   ..+. .-...|..+.|-+..     ...|++-..+|.++-|-
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            35789999999999999999999999986432111   0011 112456666665422     23566777788888777


Q ss_pred             ccCC-----CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC
Q 020107          179 IRES-----PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP  253 (331)
Q Consensus       179 ~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  253 (331)
                      +..+     +....+.....+...|.++.++| ..++|++||....      +.  . . .  .+-...+++-+.-.+.+
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~------~~--~-~-s--~a~~~GLtaWRiL~~~P  192 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQN------QD--G-M-S--KASSCGLTAWRILSDSP  192 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCC------CC--c-c-c--cccccCceEEEEcCCCC
Confidence            6432     22334444333577899999999 7778777764322      00  0 0 0  12222333333333322


Q ss_pred             CeEEEEEecCcEE-------EEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          254 GLVLAACMHNGFA-------VVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       254 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ....+...++.+.       ++++-.  .+...........|..|..||++         .+||+.. .+|.|.+|++.+
T Consensus       193 yyk~v~~~~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPdg---------~~La~ih-~sG~lsLW~iPs  260 (282)
T PF15492_consen  193 YYKQVTSSEDDITASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPDG---------SLLACIH-FSGSLSLWEIPS  260 (282)
T ss_pred             cEEEccccCccccccccccceeeccc--eeeeeccccCCCceEEEEECCCC---------CEEEEEE-cCCeEEEEecCc
Confidence            3333333333321       222221  11111122346789999999999         7999999 899999999987


Q ss_pred             cccC
Q 020107          327 DCLT  330 (331)
Q Consensus       327 ~~~~  330 (331)
                      -.+.
T Consensus       261 L~~~  264 (282)
T PF15492_consen  261 LRLQ  264 (282)
T ss_pred             chhh
Confidence            6543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=5.3e-09  Score=87.19  Aligned_cols=273  Identities=14%  Similarity=0.150  Sum_probs=178.5

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .-.-|+|+|.+   .||++--           ..-|.+|-=..-    ..+.+.-...|.-+.|||.    .++|++-+.
T Consensus       212 Tetyv~wSP~G---TYL~t~H-----------k~GI~lWGG~~f----~r~~RF~Hp~Vq~idfSP~----EkYLVT~s~  269 (698)
T KOG2314|consen  212 TETYVRWSPKG---TYLVTFH-----------KQGIALWGGESF----DRIQRFYHPGVQFIDFSPN----EKYLVTYSP  269 (698)
T ss_pred             eeeeEEecCCc---eEEEEEe-----------ccceeeecCccH----HHHHhccCCCceeeecCCc----cceEEEecC
Confidence            34568888888   8999886           566899964443    3333334456899999999    999999764


Q ss_pred             CccE------------EEecCCCcccCc--------cE-EEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccc
Q 020107           91 DGGL------------LRDITGEKISSS--------MC-LCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHE  149 (331)
Q Consensus        91 dg~i------------iw~~~~~~~~~~--------~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  149 (331)
                      .-..            |||+.++....+        .+ .-..||.|++++|.-.. .+|.||+..+-.+...+.+  .-
T Consensus       270 ~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl--ki  346 (698)
T KOG2314|consen  270 EPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL--KI  346 (698)
T ss_pred             CccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc--CC
Confidence            3222            999999876321        11 23579999999987766 6788998765322112222  24


Q ss_pred             ceeEEEeeCCCCCcEEEEEc-----CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE----------
Q 020107          150 FELWATSFDVHQPHMVYTGS-----DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG----------  214 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------  214 (331)
                      ..|....|+| .+++|+-=.     .-..+.+-.+.+++.+.....   +.-.=..+.|-. +|.+|+.-          
T Consensus       347 ~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl---fnVsDckLhWQk-~gdyLcvkvdR~tK~~~~  421 (698)
T KOG2314|consen  347 SGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL---FNVSDCKLHWQK-SGDYLCVKVDRHTKSKVK  421 (698)
T ss_pred             ccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccc---eeeeccEEEecc-CCcEEEEEEEeecccccc
Confidence            5688899999 666665422     123455666665554444444   444445566666 67776653          


Q ss_pred             ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec--CcEEEEEEcCc--ccceeEEeecCCcceee
Q 020107          215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH--NGFAVVKVGGE--KAEVLETYAKHGSLAYG  290 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~h~~~v~~  290 (331)
                      +.=..+.|+.++.-.-|+..  ......|...+|-|.|+...+.++..  ..+.+|.+...  ..+++..+..  ...+.
T Consensus       422 g~f~n~eIfrireKdIpve~--velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~  497 (698)
T KOG2314|consen  422 GQFSNLEIFRIREKDIPVEV--VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANT  497 (698)
T ss_pred             ceEeeEEEEEeeccCCCcee--eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccce
Confidence            22234777888875556655  67788999999999996666666544  34566666532  2445555543  45678


Q ss_pred             eeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCC
Q 020107          291 ADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPES  326 (331)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~  326 (331)
                      +.|+|.|         ++++.++-  ..|.+.++|++-
T Consensus       498 vfwsPkG---------~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  498 VFWSPKG---------RFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             EEEcCCC---------cEEEEEEecccccceEEEecch
Confidence            9999999         67766531  578899999863

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.29  E-value=8.5e-11  Score=90.95  Aligned_cols=210  Identities=13%  Similarity=0.203  Sum_probs=145.1

Q ss_pred             CccEEEEEEcCCCCeEEEEecCCeEEEEEccccc---eeeeeeeeccc------------ceeEEEeeCC-CCCcEEEEE
Q 020107          105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ---LEVLQQWKAHE------------FELWATSFDV-HQPHMVYTG  168 (331)
Q Consensus       105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~------------~~v~~~~~~~-~~~~~l~~~  168 (331)
                      ...|+++.|...|.++++|...|.|.+|.-+...   .+....+++|.            ..|..+.|-. .+.+.++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4568999999999999999999999999876532   22234455553            4567787764 234567777


Q ss_pred             cCCCeEEEEEccCCCce----------------------eee-----------------e-cccCCCcceEEEEEecCCC
Q 020107          169 SDDCKFSGWDIRESPFK----------------------LAF-----------------Q-NSKIHKMGVCCIASIPSDS  208 (331)
Q Consensus       169 ~~dg~i~i~d~~~~~~~----------------------~~~-----------------~-~~~~~~~~v~~~~~~~~~~  208 (331)
                      +.|.+|++|.+......                      +.+                 + ....|...|.++.++. +.
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~  184 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DK  184 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-ch
Confidence            88999999998754110                      000                 0 0134777789999987 66


Q ss_pred             CEEEEEecCCeEEEEEecCCCCCceeee-eec-----CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc----cce-
Q 020107          209 NTLLTGSYDEYLRVWDVRSISKPVNETS-VCL-----GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK----AEV-  277 (331)
Q Consensus       209 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-  277 (331)
                      ..++++ .|-.|.+|++........... .+|     ..-|++..|+|.....++-+++.+.|++.+++...    ... 
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            666655 578899999987544433311 223     23589999999877788888889999999888421    111 


Q ss_pred             ---------eEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          278 ---------LETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       278 ---------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                               ..-+.+-...|.++.|++++         +++++-.  =-+|+|||+...
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ng---------ryIlsRd--yltvkiwDvnm~  311 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNG---------RYILSRD--YLTVKIWDVNMA  311 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCC---------cEEEEec--cceEEEEecccc
Confidence                     11122344578899999998         7888865  689999998654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.29  E-value=2.1e-09  Score=81.61  Aligned_cols=218  Identities=11%  Similarity=-0.025  Sum_probs=138.5

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC---
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG---  100 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~---  100 (331)
                      .+||.|+          ..|...+|...+.+.-+... ..|...|+-+.=.-+.   ..-+..++.|.++ +.++..   
T Consensus        85 ~~la~gG----------~~g~fd~~~~~tn~~h~~~c-d~snn~v~~~~r~cd~---~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   85 VTLADGG----------ASGQFDLFACNTNDGHLYQC-DVSNNDVTLVKRYCDL---KFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             cEEEecc----------ccceeeeecccCcccceeee-cccccchhhhhhhccc---ccceeeccCCcceeEEEEecCcc
Confidence            4788887          79999999998776333333 4455443322221121   2245566666666 333332   


Q ss_pred             -CcccCc--cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeee-eeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107          101 -EKISSS--MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ-QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG  176 (331)
Q Consensus       101 -~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (331)
                       ...|..  .+.+++++++++++++.+....|..|.+.......+. ........-.+..|+. ....+|++..||++.|
T Consensus       151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I  229 (344)
T KOG4532|consen  151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAI  229 (344)
T ss_pred             cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEE
Confidence             223332  3789999999999999999999999999875433333 2233344556888996 7789999999999999


Q ss_pred             EEccCCCceeee--ecccCCCcceEEEEEecCCC--CEEEEEecCCeEEEEEecCCCCCceee-----eeecCC-ceEEE
Q 020107          177 WDIRESPFKLAF--QNSKIHKMGVCCIASIPSDS--NTLLTGSYDEYLRVWDVRSISKPVNET-----SVCLGG-GVWRI  246 (331)
Q Consensus       177 ~d~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~-~v~~~  246 (331)
                      ||+|........  ...+.|.+.++.+.|++ .+  .+|...-.=+.+.+.|+|+........     +..|.. .|...
T Consensus       230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt  308 (344)
T KOG4532|consen  230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT  308 (344)
T ss_pred             EEecccccchhhhcccCCCCCCceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc
Confidence            999975532222  12355899999999997 43  234444345789999999864322221     112222 36667


Q ss_pred             EECCCCCCeEEE
Q 020107          247 KHHPFIPGLVLA  258 (331)
Q Consensus       247 ~~~~~~~~~~~~  258 (331)
                      .|+.+++...++
T Consensus       309 ~f~~~n~s~~v~  320 (344)
T KOG4532|consen  309 NFNNENESNDVK  320 (344)
T ss_pred             cccCCCcccccc
Confidence            777765444433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=5.1e-09  Score=87.31  Aligned_cols=231  Identities=16%  Similarity=0.227  Sum_probs=148.8

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE--EcCCccE----EEecCCCccc---------Ccc
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ--ADADGGL----LRDITGEKIS---------SSM  107 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~--~~~dg~i----iw~~~~~~~~---------~~~  107 (331)
                      .+.+++|++.....   ...+.|...|+.+.+||.++  ...+|+  -..+|..    ||.......|         ...
T Consensus       145 ~nev~f~~~~~f~~---~~~kl~~~~i~~f~lSpgp~--~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkad  219 (566)
T KOG2315|consen  145 SNEVQFYDLGSFKT---IQHKLSVSGITMLSLSPGPE--PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKAD  219 (566)
T ss_pred             cceEEEEecCCccc---eeeeeeccceeeEEecCCCC--CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccc
Confidence            67899999988542   22345788999999999843  234544  2344544    8877744333         112


Q ss_pred             EEEEEEcCCCCeE-EEEec--C---------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEE--EcCCCe
Q 020107          108 CLCLEWNPSATSI-TVGLS--D---------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYT--GSDDCK  173 (331)
Q Consensus       108 v~~~~~~~~~~~l-~~~~~--d---------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~  173 (331)
                      =..+.|++-|.-| +.++.  |         .++++++++..  .....+. ..++|.++.|+| ++..+++  |-.-..
T Consensus       220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~--s~~V~L~-k~GPVhdv~W~~-s~~EF~VvyGfMPAk  295 (566)
T KOG2315|consen  220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE--SVSVPLL-KEGPVHDVTWSP-SGREFAVVYGFMPAK  295 (566)
T ss_pred             eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc--eEEEecC-CCCCceEEEECC-CCCEEEEEEecccce
Confidence            2357788877643 22221  3         35777777632  2233343 478999999999 6554443  456778


Q ss_pred             EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECC
Q 020107          174 FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP  250 (331)
Q Consensus       174 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  250 (331)
                      +.|+|++.   ...+..   ..++=+++-|+| .+++++.+|.+   |.|-+||..+ .+.+..   ..-..-+-+.|+|
T Consensus       296 vtifnlr~---~~v~df---~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~---~~a~~tt~~eW~P  364 (566)
T KOG2315|consen  296 VTIFNLRG---KPVFDF---PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPN-RKLIAK---FKAANTTVFEWSP  364 (566)
T ss_pred             EEEEcCCC---CEeEeC---CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccc-hhhccc---cccCCceEEEEcC
Confidence            99999984   334444   467788999999 99999998865   7899999998 344443   2223455689999


Q ss_pred             CCCCeEEEEEe-----cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107          251 FIPGLVLAACM-----HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       251 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                      +|+.++.+++.     |+++++|+...   ..+....- ....+.+.|-|-.
T Consensus       365 dGe~flTATTaPRlrvdNg~KiwhytG---~~l~~~~f-~sEL~qv~W~P~~  412 (566)
T KOG2315|consen  365 DGEYFLTATTAPRLRVDNGIKIWHYTG---SLLHEKMF-KSELLQVEWRPFN  412 (566)
T ss_pred             CCcEEEEEeccccEEecCCeEEEEecC---ceeehhhh-hHhHhheeeeecC
Confidence            99544444444     67888888774   33332211 1146777777654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.26  E-value=1.4e-10  Score=87.44  Aligned_cols=150  Identities=15%  Similarity=0.285  Sum_probs=98.4

Q ss_pred             CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-----CCCeEEEEEccCCCceeeeec
Q 020107          116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-----DDCKFSGWDIRESPFKLAFQN  190 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~  190 (331)
                      .++.++++..||.+.+++.+. .......+......-.+.+... .++.+.++.     .-+..+.|+++..+....-..
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~  177 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK  177 (319)
T ss_pred             cCCceEecCCCceEEEEechH-HHhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeeccccccccccccc
Confidence            456799999999999999875 2111111111111111222221 334444433     123456677664432222111


Q ss_pred             ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                         ....|.+++-+|...+++++|+.||.+.+||.|+...|... +..|+.+++.+-|+|..+..+++++.++.  +|.+
T Consensus       178 ---~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-l~ahk~~i~eV~FHpk~p~~Lft~sedGs--lw~w  251 (319)
T KOG4714|consen  178 ---ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-LKAHKAEIWEVHFHPKNPEHLFTCSEDGS--LWHW  251 (319)
T ss_pred             ---ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH-HHHhhhhhhheeccCCCchheeEecCCCc--EEEE
Confidence               24459999999977888999999999999999997555554 68999999999999998889999988888  6655


Q ss_pred             cCc
Q 020107          271 GGE  273 (331)
Q Consensus       271 ~~~  273 (331)
                      ...
T Consensus       252 das  254 (319)
T KOG4714|consen  252 DAS  254 (319)
T ss_pred             cCC
Confidence            543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.25  E-value=1.1e-07  Score=78.20  Aligned_cols=255  Identities=11%  Similarity=0.012  Sum_probs=147.7

Q ss_pred             CcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC----------CccE-EEecCCCcccCc------
Q 020107           44 GSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA----------DGGL-LRDITGEKISSS------  106 (331)
Q Consensus        44 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------dg~i-iw~~~~~~~~~~------  106 (331)
                      +.|.+.|.++.+ .+..+..+....  .+ ++|+    ++.|+++..          +..+ +||..+.+....      
T Consensus        27 ~~v~ViD~~~~~-v~g~i~~G~~P~--~~-~spD----g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~   98 (352)
T TIGR02658        27 TQVYTIDGEAGR-VLGMTDGGFLPN--PV-VASD----GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG   98 (352)
T ss_pred             ceEEEEECCCCE-EEEEEEccCCCc--ee-ECCC----CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence            899999999876 444454443332  24 9999    777777766          4555 999988765311      


Q ss_pred             -------cEEEEEEcCCCCeEEEEe-c-CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107          107 -------MCLCLEWNPSATSITVGL-S-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW  177 (331)
Q Consensus       107 -------~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (331)
                             ....++++|+|++|++.. . +..|.+.|+.+++.  +.++.... ...-...++ . ..+ +-+.||.....
T Consensus        99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv--v~ei~vp~-~~~vy~t~e-~-~~~-~~~~Dg~~~~v  172 (352)
T TIGR02658        99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF--VRMMDVPD-CYHIFPTAN-D-TFF-MHCRDGSLAKV  172 (352)
T ss_pred             chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE--EEEEeCCC-CcEEEEecC-C-ccE-EEeecCceEEE
Confidence                   122788999999999876 3 79999999998865  55444311 222222222 2 222 22335555444


Q ss_pred             EccCCCceeee--ecccC-----CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC----CCceeeee------ecC
Q 020107          178 DIRESPFKLAF--QNSKI-----HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS----KPVNETSV------CLG  240 (331)
Q Consensus       178 d~~~~~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~------~~~  240 (331)
                      .+........-  ..+..     ...+    .|.+.++.++.+..+ |+|.+.|+....    .++.....      -..
T Consensus       173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP  247 (352)
T TIGR02658       173 GYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP  247 (352)
T ss_pred             EecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence            33321111100  00000     0112    334436777766666 999999965421    12211000      123


Q ss_pred             CceEEEEECCCCCCeEEEE-E--------ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCc-EEE
Q 020107          241 GGVWRIKHHPFIPGLVLAA-C--------MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNS-LVA  310 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~  310 (331)
                      +.+.-++++|+++.++++. +        ..+.  +|-+...+.+.+..+.- ...+..++++|++         + +|+
T Consensus       248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~--V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dg---------kp~ly  315 (352)
T TIGR02658       248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRF--LFVVDAKTGKRLRKIEL-GHEIDSINVSQDA---------KPLLY  315 (352)
T ss_pred             CcceeEEEcCCCCEEEEEecCCccccccCCCCE--EEEEECCCCeEEEEEeC-CCceeeEEECCCC---------CeEEE
Confidence            3445599999985555433 1        1134  44444444677777663 3478899999998         4 555


Q ss_pred             EeecCCCeEEEEcCCCccc
Q 020107          311 TCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       311 s~~~~d~~i~iW~~~~~~~  329 (331)
                      +....++.|.+.|+.++..
T Consensus       316 vtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       316 ALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             EeCCCCCcEEEEECcCCeE
Confidence            4432688999999988743

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=3.5e-09  Score=90.93  Aligned_cols=202  Identities=8%  Similarity=-0.032  Sum_probs=115.3

Q ss_pred             ccEEEEEEcCCCCeE---EEEecC--CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCC----eEE
Q 020107          106 SMCLCLEWNPSATSI---TVGLSD--GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDC----KFS  175 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l---~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg----~i~  175 (331)
                      ....+-+|+|||+.+   ++...+  ..|.+.++.+++...+..+.+   .....+|+| +++.|+..+ .+|    .+.
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSP-DG~~Laf~s~~~g~~di~~~  260 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSP-RKKLLAFISDRYGNPDLFIQ  260 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECC-CCCEEEEEECCCCCcceeEE
Confidence            445667899999753   244444  357888888776544544443   345689999 665555443 323    445


Q ss_pred             EEEccCCC--ceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEec--CCCCCceeeeeecCCceEEEEECC
Q 020107          176 GWDIRESP--FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVR--SISKPVNETSVCLGGGVWRIKHHP  250 (331)
Q Consensus       176 i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~  250 (331)
                      +|++..+.  ....+..  ..........|+| +++.|+..+ .+|...+|.+.  ........ +......+....|+|
T Consensus       261 ~~~~~~g~~g~~~~lt~--~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~-lt~~~~~~~~p~wSP  336 (428)
T PRK01029        261 SFSLETGAIGKPRRLLN--EAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL-LTKKYRNSSCPAWSP  336 (428)
T ss_pred             EeecccCCCCcceEeec--CCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEE-eccCCCCccceeECC
Confidence            57776532  1222221  1223446789999 888777655 56765666543  21122222 233445677899999


Q ss_pred             CCCCeEEEEEec-C--cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC--CCeEEEEcCC
Q 020107          251 FIPGLVLAACMH-N--GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY--DRLLRIWMPE  325 (331)
Q Consensus       251 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~--d~~i~iW~~~  325 (331)
                      ++ ..++..+.. +  .+.+|++..  ++ ...+......+....|+|++         +.|+..+..  ...|++|+++
T Consensus       337 DG-~~Laf~~~~~g~~~I~v~dl~~--g~-~~~Lt~~~~~~~~p~wSpDG---------~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        337 DG-KKIAFCSVIKGVRQICVYDLAT--GR-DYQLTTSPENKESPSWAIDS---------LHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             CC-CEEEEEEcCCCCcEEEEEECCC--CC-eEEccCCCCCccceEECCCC---------CEEEEEECCCCCceEEEEECC
Confidence            98 444444333 2  344555443  23 23333333456789999998         455533212  3578889987


Q ss_pred             Ccc
Q 020107          326 SDC  328 (331)
Q Consensus       326 ~~~  328 (331)
                      ++.
T Consensus       404 ~g~  406 (428)
T PRK01029        404 TKK  406 (428)
T ss_pred             CCC
Confidence            764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1.4e-08  Score=84.81  Aligned_cols=293  Identities=12%  Similarity=0.118  Sum_probs=171.3

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCC-CCCCCcEEEEeccCcccceEEeEe--eecCcEeEEEEcCCCCCCCCe
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDK-PSRNGSISLFNVNAEEKNLELLYR--MDTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~-~~~~g~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~   84 (331)
                      ....+.-|.|+|..   +||++-++.+..... .+....+.|||+.++. ..+.+..  .....-.-..||.+    +++
T Consensus       248 ~Hp~Vq~idfSP~E---kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~-lkrsF~~~~~~~~~WP~frWS~D----dKy  319 (698)
T KOG2314|consen  248 YHPGVQFIDFSPNE---KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL-LKRSFPVIKSPYLKWPIFRWSHD----DKY  319 (698)
T ss_pred             cCCCceeeecCCcc---ceEEEecCCccccCcccCCCceEEEEEccccc-hhcceeccCCCccccceEEeccC----Cce
Confidence            33345566666666   899998876655322 2345689999999986 2222211  11112334789999    899


Q ss_pred             EEEEcCCccEEEecCC------CcccCccEEEEEEcCCCCeEEEEec-----CCeEEEEEccccceeeeeeeecccceeE
Q 020107           85 LAQADADGGLLRDITG------EKISSSMCLCLEWNPSATSITVGLS-----DGSVSIVSVVESQLEVLQQWKAHEFELW  153 (331)
Q Consensus        85 l~~~~~dg~iiw~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~v~  153 (331)
                      +|.-..++..|++...      .......|....|+|.++.||-=..     -..+.+..+.+++.  ++.-.-+.-.=.
T Consensus       320 ~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~--iRt~nlfnVsDc  397 (698)
T KOG2314|consen  320 FARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE--IRTKNLFNVSDC  397 (698)
T ss_pred             eEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce--eeeccceeeecc
Confidence            9988887776555443      2334567888999999877765332     12344444444322  332222222222


Q ss_pred             EEeeCCCCCcEEEEE----------cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec---CCeE
Q 020107          154 ATSFDVHQPHMVYTG----------SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY---DEYL  220 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i  220 (331)
                      .+.|.. ++.+|+.-          +.-..+.|+.++..........   -...|...+|-| .|+.+++-+.   ..++
T Consensus       398 kLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve---lke~vi~FaWEP-~gdkF~vi~g~~~k~tv  472 (698)
T KOG2314|consen  398 KLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE---LKESVIAFAWEP-HGDKFAVISGNTVKNTV  472 (698)
T ss_pred             EEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee---cchheeeeeecc-CCCeEEEEEccccccce
Confidence            345554 55555532          2223466777776553222222   477899999999 8877776553   3578


Q ss_pred             EEEEecC-CCCCceeeeeecCCceEEEEECCCCCCeEEEEE---ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107          221 RVWDVRS-ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC---MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRG  296 (331)
Q Consensus       221 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  296 (331)
                      .+|-+.+ ..++... ..-.....+.+.|+|.| +.+++++   ..+.+..++....  ....+-....-..+.+.|.|.
T Consensus       473 sfY~~e~~~~~~~lV-k~~dk~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a--~~k~~~~~eh~~at~veWDPt  548 (698)
T KOG2314|consen  473 SFYAVETNIKKPSLV-KELDKKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYA--DLKDTASPEHFAATEVEWDPT  548 (698)
T ss_pred             eEEEeecCCCchhhh-hhhcccccceEEEcCCC-cEEEEEEecccccceEEEecchh--hhhhccCccccccccceECCC
Confidence            8998884 3222221 11223557889999997 5544443   2455666666542  222221122235678999999


Q ss_pred             CCcccccccCcEEEEeec-----CCCeEEEEcCCCcc
Q 020107          297 RSSLEGKRKNSLVATCSF-----YDRLLRIWMPESDC  328 (331)
Q Consensus       297 ~~~~~~~~~~~~l~s~~~-----~d~~i~iW~~~~~~  328 (331)
                      |         ++++|+++     .|.--+||++...+
T Consensus       549 G---------RYvvT~ss~wrhk~d~GYri~tfqGrl  576 (698)
T KOG2314|consen  549 G---------RYVVTSSSSWRHKVDNGYRIFTFQGRL  576 (698)
T ss_pred             C---------CEEEEeeehhhhccccceEEEEeecHH
Confidence            9         89999973     34556777766543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.21  E-value=3.8e-08  Score=93.21  Aligned_cols=240  Identities=11%  Similarity=0.117  Sum_probs=148.8

Q ss_pred             EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-------------------CccEEEEEEcCCCCeEEEEec-CCeE
Q 020107           71 DIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-------------------SSMCLCLEWNPSATSITVGLS-DGSV  129 (331)
Q Consensus        71 ~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-------------------~~~v~~~~~~~~~~~l~~~~~-dg~i  129 (331)
                      .+++++.+   +.++++-..++.+ +++.......                   -.....++++++++.|+++.. ++.|
T Consensus       572 gvavd~~~---g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        572 KLAIDLLN---NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             eEEEECCC---CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            56777652   4455555666666 6665433110                   112467899998887766654 6789


Q ss_pred             EEEEccccceeeeee-------eecc-------cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc----
Q 020107          130 SIVSVVESQLEVLQQ-------WKAH-------EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS----  191 (331)
Q Consensus       130 ~i~d~~~~~~~~~~~-------~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----  191 (331)
                      +++|+.++....+..       +.+.       -.....++++|.++.++++.+.++.|++||..++... .+...    
T Consensus       649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            999987754322211       0000       1123578999866777888888999999999876432 22110    


Q ss_pred             --c------CCCcceEEEEEecCCCC-EEEEEecCCeEEEEEecCCCCCcee--------ee--ee---------cCCce
Q 020107          192 --K------IHKMGVCCIASIPSDSN-TLLTGSYDEYLRVWDVRSISKPVNE--------TS--VC---------LGGGV  243 (331)
Q Consensus       192 --~------~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--------~~--~~---------~~~~v  243 (331)
                        .      ..-.....|+++| ++. ++++-+.++.|++||+.++...+..        ..  .+         .-...
T Consensus       728 ~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             cCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence              0      0112456799999 776 5556667799999999864321100        00  00         01124


Q ss_pred             EEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec--------------CCcceeeeeecCCCCcccccccCcEE
Q 020107          244 WRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK--------------HGSLAYGADWQRGRSSLEGKRKNSLV  309 (331)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~~~~~~~~~~l  309 (331)
                      ..+++++++ .++++-..++.+++|+....  . +.++.+              .-....++++++++         +++
T Consensus       807 ~Gvavd~dG-~LYVADs~N~rIrviD~~tg--~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG---------~ly  873 (1057)
T PLN02919        807 LGVLCAKDG-QIYVADSYNHKIKKLDPATK--R-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG---------RLF  873 (1057)
T ss_pred             ceeeEeCCC-cEEEEECCCCEEEEEECCCC--e-EEEEeccCCcCCCCCcccccccCCceEEEEeCCC---------CEE
Confidence            678999987 56777777778888886542  2 222221              12246788999988         678


Q ss_pred             EEeecCCCeEEEEcCCCccc
Q 020107          310 ATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       310 ~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ++-+ .++.|++||++++..
T Consensus       874 VaDt-~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        874 VADT-NNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEC-CCCEEEEEECCCCcc
Confidence            8877 899999999988643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.21  E-value=2.1e-08  Score=82.89  Aligned_cols=272  Identities=12%  Similarity=0.102  Sum_probs=177.9

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      .++..+.++|.+   .+|++..           -..|.+|.-.... .+.   ..-...|..+.|+|.    +++|.+-+
T Consensus        33 ~p~~~~~~SP~G---~~l~~~~-----------~~~V~~~~g~~~~-~l~---~~~~~~V~~~~fSP~----~kYL~tw~   90 (561)
T COG5354          33 WPVAYVSESPLG---TYLFSEH-----------AAGVECWGGPSKA-KLV---RFRHPDVKYLDFSPN----EKYLVTWS   90 (561)
T ss_pred             cchhheeecCcc---hheehhh-----------ccceEEccccchh-hee---eeecCCceecccCcc----cceeeeec
Confidence            466677777776   8898886           6679999877654 232   333467999999999    99999988


Q ss_pred             CCccE----------------EEecCCCccc------Ccc--EE-EEEEcCCCCeEEEEecCCeEEEEEccccce--eee
Q 020107           90 ADGGL----------------LRDITGEKIS------SSM--CL-CLEWNPSATSITVGLSDGSVSIVSVVESQL--EVL  142 (331)
Q Consensus        90 ~dg~i----------------iw~~~~~~~~------~~~--v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~  142 (331)
                      ..+.+                +||+.++.+.      ..+  .. -+.|+-+.+++|-- ....+.|+++ ++..  .+.
T Consensus        91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~  168 (561)
T COG5354          91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPF  168 (561)
T ss_pred             cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCch
Confidence            77763                8988887652      122  33 56788787776554 3467899997 4332  122


Q ss_pred             eeeecccceeEEEeeCCC-CCcEEEE-----EcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec
Q 020107          143 QQWKAHEFELWATSFDVH-QPHMVYT-----GSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                      ..++  ...+....|+|. +...|+.     .+..+.+++|.+...+.+.....   ....=..+.|++ .+++|+.--.
T Consensus       169 ~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l---fk~~~~qLkW~~-~g~~ll~l~~  242 (561)
T COG5354         169 KNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL---FKVSGVQLKWQV-LGKYLLVLVM  242 (561)
T ss_pred             hhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee---EeecccEEEEec-CCceEEEEEE
Confidence            3332  356888899984 2233333     45678999999987665554444   233345688888 7776654321


Q ss_pred             -----------CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe-cCcEEEEEEcCcccceeEEeecC
Q 020107          217 -----------DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM-HNGFAVVKVGGEKAEVLETYAKH  284 (331)
Q Consensus       217 -----------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h  284 (331)
                                 ...+.|++++....++.   ....++|...+|.|.++++.+++|. .-.+.++++..   .+...+  .
T Consensus       243 t~~ksnKsyfgesnLyl~~~~e~~i~V~---~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~---Nl~~~~--P  314 (561)
T COG5354         243 THTKSNKSYFGESNLYLLRITERSIPVE---KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG---NLRFYF--P  314 (561)
T ss_pred             EeeecccceeccceEEEEeeccccccee---ccccccceeeeecccCCceeEEecccccceeeccccc---ceEEec--C
Confidence                       24588888885322222   3668899999999998777777653 44444555543   433333  3


Q ss_pred             CcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCcc
Q 020107          285 GSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDC  328 (331)
Q Consensus       285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~  328 (331)
                      ...-..+.|+|..         ++++.+|+  ..|.|-+|+.....
T Consensus       315 e~~rNT~~fsp~~---------r~il~agF~nl~gni~i~~~~~rf  351 (561)
T COG5354         315 EQKRNTIFFSPHE---------RYILFAGFDNLQGNIEIFDPAGRF  351 (561)
T ss_pred             CcccccccccCcc---------cEEEEecCCccccceEEeccCCce
Confidence            3444567788887         78888774  33778888877653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.21  E-value=1.2e-07  Score=77.92  Aligned_cols=165  Identities=10%  Similarity=0.038  Sum_probs=126.1

Q ss_pred             CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc-cE-EEecCCC
Q 020107           24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG-GL-LRDITGE  101 (331)
Q Consensus        24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-~i-iw~~~~~  101 (331)
                      |+++|.-+           .|...|.+.-.+.    .+.-+|.+.|.-..+..+    .+-++.|..|| .+ +++..+.
T Consensus       332 Gd~ia~VS-----------RGkaFi~~~~~~~----~iqv~~~~~VrY~r~~~~----~e~~vigt~dgD~l~iyd~~~~  392 (668)
T COG4946         332 GDYIALVS-----------RGKAFIMRPWDGY----SIQVGKKGGVRYRRIQVD----PEGDVIGTNDGDKLGIYDKDGG  392 (668)
T ss_pred             CcEEEEEe-----------cCcEEEECCCCCe----eEEcCCCCceEEEEEccC----CcceEEeccCCceEEEEecCCc
Confidence            47888887           8888888776653    334578888999999988    67899999999 45 9999887


Q ss_pred             cc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC----
Q 020107          102 KI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC----  172 (331)
Q Consensus       102 ~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----  172 (331)
                      +.     .-+.|.++..+++|+.++++.....|.++|++++..+.+.  +...+-|+.++|+| ++.+++-+--+|    
T Consensus       393 e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id--kS~~~lItdf~~~~-nsr~iAYafP~gy~tq  469 (668)
T COG4946         393 EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID--KSEYGLITDFDWHP-NSRWIAYAFPEGYYTQ  469 (668)
T ss_pred             eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec--ccccceeEEEEEcC-CceeEEEecCcceeee
Confidence            64     3577999999999999999999999999999998764333  34466799999999 778888776554    


Q ss_pred             eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107          173 KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       173 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      .|+++|+..++.. ....   ..+.=.+-+|.| ++++|.--+
T Consensus       470 ~Iklydm~~~Kiy-~vTT---~ta~DfsPaFD~-d~ryLYfLs  507 (668)
T COG4946         470 SIKLYDMDGGKIY-DVTT---PTAYDFSPAFDP-DGRYLYFLS  507 (668)
T ss_pred             eEEEEecCCCeEE-EecC---CcccccCcccCC-CCcEEEEEe
Confidence            6899999987633 3333   233345567888 777766544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1.6e-08  Score=87.73  Aligned_cols=198  Identities=12%  Similarity=0.029  Sum_probs=116.1

Q ss_pred             CccEEEEEEcCCCCeEEEEecC---CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEE-EEcCCC--eEEEEE
Q 020107          105 SSMCLCLEWNPSATSITVGLSD---GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY-TGSDDC--KFSGWD  178 (331)
Q Consensus       105 ~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~i~d  178 (331)
                      ...+....|+|+|+.|+..+.+   ..|.+|++.+++...+....   ..+....|+| +++.|+ +...++  .|.++|
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~---g~~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE---GLNGAPAWSP-DGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC---CCcCCeEECC-CCCEEEEEEccCCCceEEEEE
Confidence            4567889999999998776543   46899999887654443333   3345789999 555554 555555  688889


Q ss_pred             ccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCe
Q 020107          179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGL  255 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  255 (331)
                      +.+++.. .+..   +........|+| +++.|+..+. ++  .|.++|+.+++  ... ............|+|++..+
T Consensus       274 ~~~~~~~-~lt~---~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~--~~~-lt~~~~~~~~~~~Spdg~~i  345 (430)
T PRK00178        274 LASRQLS-RVTN---HPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGR--AER-VTFVGNYNARPRLSADGKTL  345 (430)
T ss_pred             CCCCCeE-Eccc---CCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCC--EEE-eecCCCCccceEECCCCCEE
Confidence            9887643 3333   445566788999 8877665553 33  56666776542  222 11122234467899998443


Q ss_pred             EEEEEecCc--EEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC--CeEEEEcCCCc
Q 020107          256 VLAACMHNG--FAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD--RLLRIWMPESD  327 (331)
Q Consensus       256 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d--~~i~iW~~~~~  327 (331)
                      +++...++.  +.++++..  ++ ...+.. ........|+|++         ++++..+..+  ..|.+++++.+
T Consensus       346 ~~~~~~~~~~~l~~~dl~t--g~-~~~lt~-~~~~~~p~~spdg---------~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        346 VMVHRQDGNFHVAAQDLQR--GS-VRILTD-TSLDESPSVAPNG---------TMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             EEEEccCCceEEEEEECCC--CC-EEEccC-CCCCCCceECCCC---------CEEEEEEecCCceEEEEEECCCC
Confidence            333323333  33344433  22 222221 2223356899998         4665544133  34666676543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=4.4e-09  Score=90.43  Aligned_cols=239  Identities=10%  Similarity=0.123  Sum_probs=163.9

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      +++||-.+|....++...+.|.++.          .+|.|.+|-+-.++.....+.....+.|.+|+|+.+    |+.++
T Consensus        66 tLeGH~~sV~vvTWNe~~QKLTtSD----------t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d----G~kIc  131 (1189)
T KOG2041|consen   66 TLEGHNASVMVVTWNENNQKLTTSD----------TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD----GTKIC  131 (1189)
T ss_pred             hhccCcceEEEEEeccccccccccC----------CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC----CcEEE
Confidence            4677777777666665556777765          899999999988764433443445567999999999    99999


Q ss_pred             EEcCCccE---------EEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc---c--eeeeee----eecc
Q 020107           87 QADADGGL---------LRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES---Q--LEVLQQ----WKAH  148 (331)
Q Consensus        87 ~~~~dg~i---------iw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~--~~~~~~----~~~~  148 (331)
                      ..-.||.+         ||.-+-   .......+.|++|.+.++.+-.+|.+.+||....   +  ..+...    +...
T Consensus       132 IvYeDGavIVGsvdGNRIwgKeL---kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~  208 (1189)
T KOG2041|consen  132 IVYEDGAVIVGSVDGNRIWGKEL---KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNF  208 (1189)
T ss_pred             EEEccCCEEEEeeccceecchhc---chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCC
Confidence            99999988         554332   2233457889999999999999999999997642   1  111111    1111


Q ss_pred             cceeEEEeeC-------CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC---
Q 020107          149 EFELWATSFD-------VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE---  218 (331)
Q Consensus       149 ~~~v~~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---  218 (331)
                      ...+..+.|.       |.+...++.+..+|.+.|..-.+......+..    ...+..+.|++ +|..|++++.+.   
T Consensus       209 ~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt----gm~~vgakWnh-~G~vLAvcG~~~da~  283 (1189)
T KOG2041|consen  209 PTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT----GMKIVGAKWNH-NGAVLAVCGNDSDAD  283 (1189)
T ss_pred             CccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec----ccEeecceecC-CCcEEEEccCccccc
Confidence            2235566665       22557899999999999887766554444443    57899999999 999999998653   


Q ss_pred             ------eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          219 ------YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       219 ------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                            .|.+|..-.  ..+.. +...+..|+.++|-..  ++-++-.-++.+.+-+++.
T Consensus       284 ~~~d~n~v~Fysp~G--~i~gt-lkvpg~~It~lsWEg~--gLriA~AvdsfiyfanIRP  338 (1189)
T KOG2041|consen  284 EPTDSNKVHFYSPYG--HIVGT-LKVPGSCITGLSWEGT--GLRIAIAVDSFIYFANIRP  338 (1189)
T ss_pred             CccccceEEEeccch--hheEE-EecCCceeeeeEEcCC--ceEEEEEecceEEEEeecc
Confidence                  455554332  22322 4566778999999877  5656666677666666554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.18  E-value=7.7e-07  Score=70.93  Aligned_cols=267  Identities=12%  Similarity=0.102  Sum_probs=167.1

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee--cCcEeEEEEcCCCCCCCCeEEE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD--TAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +.+.-+++.|..   +.|-++..       .+..|.|..|.++.....+..+-+.-  ..+-..++++++    +++|++
T Consensus        40 ~nptyl~~~~~~---~~LY~v~~-------~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~----g~~vf~  105 (346)
T COG2706          40 GNPTYLAVNPDQ---RHLYVVNE-------PGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDED----GRFVFV  105 (346)
T ss_pred             CCCceEEECCCC---CEEEEEEe-------cCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCC----CCEEEE
Confidence            445556666655   66766652       12378899999987533444442221  233478999999    899999


Q ss_pred             EcCCccE--EEecCC---------CcccCc----------cEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeee
Q 020107           88 ADADGGL--LRDITG---------EKISSS----------MCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQW  145 (331)
Q Consensus        88 ~~~dg~i--iw~~~~---------~~~~~~----------~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~  145 (331)
                      ++.....  +..+..         ...|..          -+....+.|++++|++..- --.|.+|++..+++.+....
T Consensus       106 AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~  185 (346)
T COG2706         106 ANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA  185 (346)
T ss_pred             EEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc
Confidence            8865443  443322         111222          2778899999999888765 55789999998876544332


Q ss_pred             e-cccceeEEEeeCCCCCcEEEEE-cCCCeEEEEEccCC-Cceeeeec---cc---CCCcceEEEEEecCCCCEEEEEec
Q 020107          146 K-AHEFELWATSFDVHQPHMVYTG-SDDCKFSGWDIRES-PFKLAFQN---SK---IHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       146 ~-~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~-~~~~~~~~---~~---~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                      . .....-+.+.|+| ++++.... --+++|.+|..... .....++.   .+   ........|.++| ++++|+++..
T Consensus       186 ~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNR  263 (346)
T COG2706         186 EVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNR  263 (346)
T ss_pred             ccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecC
Confidence            2 2345678999999 66665554 46899999998874 11222221   01   1245677899999 9999988763


Q ss_pred             -CCeEEEEEecCCCCCceee--eeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEee-cCCcceeee
Q 020107          217 -DEYLRVWDVRSISKPVNET--SVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYA-KHGSLAYGA  291 (331)
Q Consensus       217 -d~~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~  291 (331)
                       ...|.+|.+......+...  ...+........++|.+ .+|+++. ..+.+.++.+...++++-.... .......++
T Consensus       264 g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv  342 (346)
T COG2706         264 GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCV  342 (346)
T ss_pred             CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEE
Confidence             3478888887643333321  12233347889999997 5555555 4567888988887766554443 222333444


Q ss_pred             ee
Q 020107          292 DW  293 (331)
Q Consensus       292 ~~  293 (331)
                      .|
T Consensus       343 ~f  344 (346)
T COG2706         343 KF  344 (346)
T ss_pred             EE
Confidence            44

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=1.4e-10  Score=90.88  Aligned_cols=161  Identities=14%  Similarity=0.147  Sum_probs=121.7

Q ss_pred             EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC----C
Q 020107          154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI----S  229 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~  229 (331)
                      .++|+-....+-++.+.+..+-+-|+.++. .+.|.    ..+.|.++.|.. .++++..|+..|.|..+|+|..    .
T Consensus       216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~-~qsf~----sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~  289 (425)
T KOG2695|consen  216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGH-QQSFQ----SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNG  289 (425)
T ss_pred             hhhhhhccceeeecccccceeEEEEeeccc-ccccc----cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCC
Confidence            446664222223556668888999999885 33444    377899999987 7899999999999999999975    2


Q ss_pred             CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-cceeEEeecCCcceeeeeecCCCCcccccccCcE
Q 020107          230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSL  308 (331)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  308 (331)
                      .+...  ..|...|+++..-......++++++++.|.+||++... +.-+.++.||...-.-+-+.-+       +.+..
T Consensus       290 ~~a~r--lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~-------~eeg~  360 (425)
T KOG2695|consen  290 WCAQR--LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK-------EEEGS  360 (425)
T ss_pred             cceEE--EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc-------cccce
Confidence            34444  78999999988776444889999999999999998752 3448889998765544444433       33479


Q ss_pred             EEEeecCCCeEEEEcCCCcccC
Q 020107          309 VATCSFYDRLLRIWMPESDCLT  330 (331)
Q Consensus       309 l~s~~~~d~~i~iW~~~~~~~~  330 (331)
                      ++++| +|...|||.+..+.+.
T Consensus       361 I~s~G-dDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  361 IFSVG-DDCYTRIWSLDSGHLL  381 (425)
T ss_pred             EEEcc-CeeEEEEEecccCcee
Confidence            99999 9999999999988764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.11  E-value=4.7e-07  Score=84.48  Aligned_cols=236  Identities=10%  Similarity=0.063  Sum_probs=153.0

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EE----ecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LR----DITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw----~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  135 (331)
                      ...|.++.|.++    ...++.+..+|.+ +.    +......     -...|.+++|+||++.|+..+.++++.+.+..
T Consensus        75 ~~~ivs~~yl~d----~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~  150 (928)
T PF04762_consen   75 NDKIVSFQYLAD----SESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD  150 (928)
T ss_pred             CCcEEEEEeccC----CCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence            356999999999    8889999999999 55    3333332     26789999999999999999999988776432


Q ss_pred             c-------------cceeee--------eeeec------------------------ccceeEEEeeCCCCCcEEEEEcC
Q 020107          136 E-------------SQLEVL--------QQWKA------------------------HEFELWATSFDVHQPHMVYTGSD  170 (331)
Q Consensus       136 ~-------------~~~~~~--------~~~~~------------------------~~~~v~~~~~~~~~~~~l~~~~~  170 (331)
                      =             +..+++        ..|.|                        ....-..++|-. |+.++++.+.
T Consensus       151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~  229 (928)
T PF04762_consen  151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSV  229 (928)
T ss_pred             ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEE
Confidence            0             000000        00100                        222345788986 8888888764


Q ss_pred             ------CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec---CCeEEEEEecCCCCCceeee--eec
Q 020107          171 ------DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY---DEYLRVWDVRSISKPVNETS--VCL  239 (331)
Q Consensus       171 ------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~--~~~  239 (331)
                            -..+|||+-. |.....-..   -.+--.+++|.| .|+++|+.-.   ...|.+|.-... +.-...+  ...
T Consensus       230 ~~~~~~~R~iRVy~Re-G~L~stSE~---v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGL-rhgeF~l~~~~~  303 (928)
T PF04762_consen  230 EPETGSRRVIRVYSRE-GELQSTSEP---VDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGL-RHGEFTLRFDPE  303 (928)
T ss_pred             EcCCCceeEEEEECCC-ceEEecccc---CCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCc-EeeeEecCCCCC
Confidence                  2578999966 442222111   233345789999 9999998865   345667765432 1111101  134


Q ss_pred             CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC-CcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107          240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH-GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL  318 (331)
Q Consensus       240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~  318 (331)
                      ...|..++|++++  .+++.-..+.+.+|...+...-+.+.+.-. ...+..+.|+|..+        ..|.... .+|.
T Consensus       304 ~~~v~~l~Wn~ds--~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p--------~~L~v~t-~~g~  372 (928)
T PF04762_consen  304 EEKVIELAWNSDS--EILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP--------LRLHVLT-SNGQ  372 (928)
T ss_pred             CceeeEEEECCCC--CEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC--------CEEEEEe-cCCc
Confidence            5679999999994  455556677799999888655556666532 33455599999876        5566655 5566


Q ss_pred             EEEEc
Q 020107          319 LRIWM  323 (331)
Q Consensus       319 i~iW~  323 (331)
                      +..++
T Consensus       373 ~~~~~  377 (928)
T PF04762_consen  373 YEIYD  377 (928)
T ss_pred             EEEEE
Confidence            65543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.08  E-value=5e-07  Score=74.96  Aligned_cols=280  Identities=13%  Similarity=0.099  Sum_probs=170.9

Q ss_pred             EeeecCCCCCcEEEEEeecccCC-----CCCCCCCcEEEEeccCcccceEEeEeeecCc--Ee-EEEEcCCCCCCCCeEE
Q 020107           15 VEFCPQDSYHHVLAASTYTLQEG-----DKPSRNGSISLFNVNAEEKNLELLYRMDTAG--IF-DIKWSPVGGNAGPFLA   86 (331)
Q Consensus        15 v~~~~~~~~~~~la~g~~~~~~~-----~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~l~   86 (331)
                      |.+..++|.+.||.+-.+....+     .-...++.+.+||..++.  +...+.+-..+  .+ -+.|+-+    ..++|
T Consensus        74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~--iv~sf~~~~q~~~~Wp~~k~s~~----D~y~A  147 (561)
T COG5354          74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM--IVFSFNGISQPYLGWPVLKFSID----DKYVA  147 (561)
T ss_pred             ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce--eEeeccccCCcccccceeeeeec----chhhh
Confidence            34444445559999998766521     111234479999999885  33333333333  33 6788888    55655


Q ss_pred             EEcCCccEEEecCCCcc--------cCccEEEEEEcCCCCe--EEE-----EecCCeEEEEEccccceeeeeeeecccce
Q 020107           87 QADADGGLLRDITGEKI--------SSSMCLCLEWNPSATS--ITV-----GLSDGSVSIVSVVESQLEVLQQWKAHEFE  151 (331)
Q Consensus        87 ~~~~dg~iiw~~~~~~~--------~~~~v~~~~~~~~~~~--l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  151 (331)
                      --..+...+.++ +...        ....+...+|+|.++.  |+.     ....+++++|.+..++....+.+..  ..
T Consensus       148 Rvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk--~~  224 (561)
T COG5354         148 RVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK--VS  224 (561)
T ss_pred             hhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe--ec
Confidence            443333336665 3222        2356788889996543  443     3457889999998765544444432  22


Q ss_pred             eEEEeeCCCCCcEEEEEc-----------CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe--cCC
Q 020107          152 LWATSFDVHQPHMVYTGS-----------DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS--YDE  218 (331)
Q Consensus       152 v~~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~  218 (331)
                      -..+.|++ .+++++.--           ....+.+++++... ++....   ..++|...+|.| .++.+++.+  .+-
T Consensus       225 ~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~---~~~pVhdf~W~p-~S~~F~vi~g~~pa  298 (561)
T COG5354         225 GVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKD---LKDPVHDFTWEP-LSSRFAVISGYMPA  298 (561)
T ss_pred             ccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecccc-cceecc---ccccceeeeecc-cCCceeEEeccccc
Confidence            34678887 444443211           12568888888544 332223   588999999999 766666554  788


Q ss_pred             eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc---EEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107          219 YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG---FAVVKVGGEKAEVLETYAKHGSLAYGADWQR  295 (331)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  295 (331)
                      .+.++|++..   +..  ......=..+.|+|.. ..++.+|.++.   +.+|+.... ..++..+.+-  ...-+.|+|
T Consensus       299 ~~s~~~lr~N---l~~--~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~r-f~~~~~~~~~--n~s~~~wsp  369 (561)
T COG5354         299 SVSVFDLRGN---LRF--YFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGR-FKVAGAFNGL--NTSYCDWSP  369 (561)
T ss_pred             ceeecccccc---eEE--ecCCcccccccccCcc-cEEEEecCCccccceEEeccCCc-eEEEEEeecC--CceEeeccC
Confidence            8999999973   332  4455566788999997 66677666543   344444332 3334345543  345678999


Q ss_pred             CCCcccccccCcEEEEeec-----CCCeEEEEcCCCc
Q 020107          296 GRSSLEGKRKNSLVATCSF-----YDRLLRIWMPESD  327 (331)
Q Consensus       296 ~~~~~~~~~~~~~l~s~~~-----~d~~i~iW~~~~~  327 (331)
                      +++         ++.+.-.     .|..|+||++...
T Consensus       370 d~q---------F~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         370 DGQ---------FYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             Cce---------EEEecCCCcccccCcceEEEEecCc
Confidence            994         5554421     5789999998643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.08  E-value=5e-09  Score=83.92  Aligned_cols=158  Identities=15%  Similarity=0.100  Sum_probs=105.0

Q ss_pred             EEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCEEEEE---ecCCeEEEEEecCC
Q 020107          153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTG---SYDEYLRVWDVRSI  228 (331)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~  228 (331)
                      ..+..++ ++.+++.+..+....+++.+.... ...+.... -...-+++.+.. +......+   +....+.+|....+
T Consensus        66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeee-ccceEEEEeecCCceeeeeeccccc
Confidence            3444554 778888888888777777775442 11111111 122334455544 33333333   34445555555542


Q ss_pred             CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-cCCcceeeeeecCCCCcccccccCc
Q 020107          229 SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-KHGSLAYGADWQRGRSSLEGKRKNS  307 (331)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~  307 (331)
                       .+...  .+|-+.++.++|+||+ ..++++-.|+.|++-+....  ..+..+- ||+.-|..++.-++.          
T Consensus       143 -~~~~~--lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~--f~IesfclGH~eFVS~isl~~~~----------  206 (390)
T KOG3914|consen  143 -RCEPI--LGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPAT--FVIESFCLGHKEFVSTISLTDNY----------  206 (390)
T ss_pred             -Ccchh--hhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcc--cchhhhccccHhheeeeeeccCc----------
Confidence             33443  7999999999999997 77888888888777666553  4444443 899999999999985          


Q ss_pred             EEEEeecCCCeEEEEcCCCcccC
Q 020107          308 LVATCSFYDRLLRIWMPESDCLT  330 (331)
Q Consensus       308 ~l~s~~~~d~~i~iW~~~~~~~~  330 (331)
                      .|+|+| .|++|++||+.++.+.
T Consensus       207 ~LlS~s-GD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  207 LLLSGS-GDKTLRLWDITSGKLL  228 (390)
T ss_pred             eeeecC-CCCcEEEEecccCCcc
Confidence            789998 8999999999998654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.08  E-value=4.6e-07  Score=86.04  Aligned_cols=240  Identities=8%  Similarity=0.045  Sum_probs=144.1

Q ss_pred             eeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe-ee------------cCcEeEEEEcCCCC
Q 020107           13 DAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR-MD------------TAGIFDIKWSPVGG   79 (331)
Q Consensus        13 ~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~-~~------------~~~v~~~~~~~~~~   79 (331)
                      ..|++.+.+  ++++++-+          .++.|+++|.....  ...+.. +.            -.....|++.++  
T Consensus       571 ~gvavd~~~--g~lyVaDs----------~n~rI~v~d~~G~~--i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--  634 (1057)
T PLN02919        571 GKLAIDLLN--NRLFISDS----------NHNRIVVTDLDGNF--IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--  634 (1057)
T ss_pred             ceEEEECCC--CeEEEEEC----------CCCeEEEEeCCCCE--EEEEccCCCcCCCCCchhccccCCCcEEEEeCC--
Confidence            345555543  14555554          58899999986542  222211 11            123578889888  


Q ss_pred             CCCCeEEEEcCCc-cE-EEecCCCccc----------------------CccEEEEEEcCC-CCeEEEEecCCeEEEEEc
Q 020107           80 NAGPFLAQADADG-GL-LRDITGEKIS----------------------SSMCLCLEWNPS-ATSITVGLSDGSVSIVSV  134 (331)
Q Consensus        80 ~~~~~l~~~~~dg-~i-iw~~~~~~~~----------------------~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~  134 (331)
                        +..|+++...+ .+ ..+..+....                      -.....++++|+ +..+++...++.|++||.
T Consensus       635 --gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~  712 (1057)
T PLN02919        635 --KNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNI  712 (1057)
T ss_pred             --CCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEEC
Confidence              66666665544 34 4444332210                      012357899995 445566667899999998


Q ss_pred             cccceeeee------eeec------ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec----------cc
Q 020107          135 VESQLEVLQ------QWKA------HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN----------SK  192 (331)
Q Consensus       135 ~~~~~~~~~------~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~  192 (331)
                      .++......      ...+      .-.....++++|+...++++-+.++.|++||+.++........          ..
T Consensus       713 ~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG  792 (1057)
T PLN02919        713 SDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG  792 (1057)
T ss_pred             CCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence            776432110      0000      0123457899984444667777889999999987642211100          00


Q ss_pred             --------CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee------------eecCCceEEEEECCCC
Q 020107          193 --------IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS------------VCLGGGVWRIKHHPFI  252 (331)
Q Consensus       193 --------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~  252 (331)
                              ..-.....+++++ +++++++-..++.|++||..+. ......-            ...-.....+++++++
T Consensus       793 ~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg-~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG  870 (1057)
T PLN02919        793 DHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATK-RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG  870 (1057)
T ss_pred             CCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCC-eEEEEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence                    0111346889999 8888888889999999999764 2221100            0111256789999997


Q ss_pred             CCeEEEEEecCcEEEEEEcCc
Q 020107          253 PGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~  273 (331)
                       .++++-+.++.|++|++...
T Consensus       871 -~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        871 -RLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             -CEEEEECCCCEEEEEECCCC
Confidence             67777778888899988664

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.07  E-value=6.9e-09  Score=91.43  Aligned_cols=184  Identities=13%  Similarity=0.176  Sum_probs=136.0

Q ss_pred             CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107          116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK  195 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  195 (331)
                      +...++.|+-...+..+|+++.+.  .+...-....|.-+..   ++..+.+|...|+|.+-|.++.+.+..+..   |+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e--~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a---Hs  217 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKE--TRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDA---HS  217 (1118)
T ss_pred             CCcceeecchhhheeeeeccccee--eeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeec---cc
Confidence            345677777777788899988654  2333223334666663   558899999999999999999988888887   99


Q ss_pred             cceEEEEEecCCCCEEEEEec---------CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107          196 MGVCCIASIPSDSNTLLTGSY---------DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFA  266 (331)
Q Consensus       196 ~~v~~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  266 (331)
                      +.|..+..   .|+.|+++|.         |..|++||+|+.+....   ........-++|+|.-...+++++..+...
T Consensus       218 ~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P---I~~~~~P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  218 GSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP---IQFPYGPQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             cceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCC---cccccCchhhhhcccccceEEEEeccccee
Confidence            99988877   6789999885         56689999999744333   233333466889998778888888888888


Q ss_pred             EEE---EcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          267 VVK---VGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       267 ~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                      +.+   +.+. ..-+..+......+.++++++++         +.||.+. .+|.|.+|.-
T Consensus       292 ~vd~~~lsNP-~~~~~~v~p~~s~i~~fDiSsn~---------~alafgd-~~g~v~~wa~  341 (1118)
T KOG1275|consen  292 FVDTATLSNP-PAGVKMVNPNGSGISAFDISSNG---------DALAFGD-HEGHVNLWAD  341 (1118)
T ss_pred             eccccccCCC-ccceeEEccCCCcceeEEecCCC---------ceEEEec-ccCcEeeecC
Confidence            888   3332 12233333445569999999999         6999999 9999999983

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=5e-07  Score=77.36  Aligned_cols=222  Identities=8%  Similarity=-0.035  Sum_probs=124.2

Q ss_pred             cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe-EEEEcCCc-c--E-EEecCCCcc-----cCccEEEEEEc
Q 020107           45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF-LAQADADG-G--L-LRDITGEKI-----SSSMCLCLEWN  114 (331)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~dg-~--i-iw~~~~~~~-----~~~~v~~~~~~  114 (331)
                      .|.+=|.+...  .+.+...  +....-.|+|+    ++. ++..+.++ .  + ++++.+++.     .........|+
T Consensus       170 ~l~~~d~dg~~--~~~~~~~--~~~~~p~wSpD----G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~S  241 (419)
T PRK04043        170 NIVLADYTLTY--QKVIVKG--GLNIFPKWANK----EQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVS  241 (419)
T ss_pred             eEEEECCCCCc--eeEEccC--CCeEeEEECCC----CCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEEC
Confidence            45555554443  3333232  36778999999    763 66544442 3  3 777766543     23445567899


Q ss_pred             CCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE-EEEcCCC--eEEEEEccCCCceeee
Q 020107          115 PSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV-YTGSDDC--KFSGWDIRESPFKLAF  188 (331)
Q Consensus       115 ~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg--~i~i~d~~~~~~~~~~  188 (331)
                      |||+.++....   +..|.++|+.+++...+   ..+........|+| +++.| ++....+  .|.+.|+.+++.....
T Consensus       242 PDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L---T~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt  317 (419)
T PRK04043        242 KDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI---TNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV  317 (419)
T ss_pred             CCCCEEEEEEccCCCcEEEEEECCCCcEEEc---ccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence            99987665433   45688888877754333   22232234567999 55544 4443434  6788888877643332


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecC---------CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYD---------EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  259 (331)
                      ..    ...  ...|+| +++.|+..+..         ..|.+.|+..+.  ... +.. .+......|+|++...++++
T Consensus       318 ~~----g~~--~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~-LT~-~~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        318 FH----GKN--NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRR-LTA-NGVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             cC----CCc--CceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEE-CCC-CCCcCCeEECCCCCEEEEEE
Confidence            21    111  248999 88887776643         267788887642  222 122 22334588999985444444


Q ss_pred             EecCcEEEEEEcCcccceeEEeecCCcceee
Q 020107          260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAYG  290 (331)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  290 (331)
                      ...+...++.+.-. +.....+....+.+..
T Consensus       387 ~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~  416 (419)
T PRK04043        387 YLGNQSALGIIRLN-YNKSFLFPLKVGKIQS  416 (419)
T ss_pred             ccCCcEEEEEEecC-CCeeEEeecCCCccCC
Confidence            33333334444433 4444444433344433

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.04  E-value=1.2e-07  Score=77.95  Aligned_cols=183  Identities=14%  Similarity=0.114  Sum_probs=131.0

Q ss_pred             CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee---e---c-----CcEeEEE-EcCCCCCCCCeEEEEc
Q 020107           22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM---D---T-----AGIFDIK-WSPVGGNAGPFLAQAD   89 (331)
Q Consensus        22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~---~---~-----~~v~~~~-~~~~~~~~~~~l~~~~   89 (331)
                      .+|..++...           .|.|++||.++..  +..+--+   .   .     .+..-+. |++.+   +++++..+
T Consensus       276 sDGkrIvFq~-----------~GdIylydP~td~--lekldI~lpl~rk~k~~k~~~pskyledfa~~~---Gd~ia~VS  339 (668)
T COG4946         276 SDGKRIVFQN-----------AGDIYLYDPETDS--LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVN---GDYIALVS  339 (668)
T ss_pred             CCCcEEEEec-----------CCcEEEeCCCcCc--ceeeecCCccccccccccccCHHHhhhhhccCC---CcEEEEEe
Confidence            4556676664           8899999988764  3332111   0   0     1111222 44443   67888877


Q ss_pred             CCccE---EEecCCCcc-cCccEEEEEEcCCCCeEEEEecCC-eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE
Q 020107           90 ADGGL---LRDITGEKI-SSSMCLCLEWNPSATSITVGLSDG-SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM  164 (331)
Q Consensus        90 ~dg~i---iw~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (331)
                      .....   .|+-..-+. +...|.-..+..+++-++.|..|| .+-++|.++++.   +.+...-+.|.++..+| +++.
T Consensus       340 RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~---kr~e~~lg~I~av~vs~-dGK~  415 (668)
T COG4946         340 RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV---KRIEKDLGNIEAVKVSP-DGKK  415 (668)
T ss_pred             cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE---EEeeCCccceEEEEEcC-CCcE
Confidence            65544   444333332 456677777888888999999999 899999998753   45556677899999998 8899


Q ss_pred             EEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC----eEEEEEecCC
Q 020107          165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE----YLRVWDVRSI  228 (331)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~  228 (331)
                      ++.+.....|.+.|+.++.....-+.   ..+-|+...|+| ++.++|-+--+|    .|+++|+...
T Consensus       416 ~vvaNdr~el~vididngnv~~idkS---~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         416 VVVANDRFELWVIDIDNGNVRLIDKS---EYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             EEEEcCceEEEEEEecCCCeeEeccc---ccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCC
Confidence            99999999999999999974433333   577899999999 999999876655    6899999874

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.04  E-value=7.2e-09  Score=83.03  Aligned_cols=154  Identities=16%  Similarity=0.068  Sum_probs=107.9

Q ss_pred             EEEEcCCCCeEEEEecCCeEEEEEccccc--eeeeeeeecccceeEEEeeCCCCCcEEEEEc---CCCeEEEEEccCCCc
Q 020107          110 CLEWNPSATSITVGLSDGSVSIVSVVESQ--LEVLQQWKAHEFELWATSFDVHQPHMVYTGS---DDCKFSGWDIRESPF  184 (331)
Q Consensus       110 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~  184 (331)
                      .+..++.++++|++..+....+++.....  .++...... ...-+++.+.. .......+.   +...+.+|....+.+
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeee-ccceEEEEeecCCceeeeeecccccCc
Confidence            44567788899999988887777776543  222222221 22233444443 223333333   334455555554443


Q ss_pred             eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107          185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG  264 (331)
Q Consensus       185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  264 (331)
                      ...+ .   |-..++.++|+| |+.+++++..|..|++-.+... ..+..+..+|..-|..++.-++  ..++++++|+.
T Consensus       145 ~~~l-G---hvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS~isl~~~--~~LlS~sGD~t  216 (390)
T KOG3914|consen  145 EPIL-G---HVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVSTISLTDN--YLLLSGSGDKT  216 (390)
T ss_pred             chhh-h---hhhhhheeeecC-CCCEEEEecCCceEEEEecCcc-cchhhhccccHhheeeeeeccC--ceeeecCCCCc
Confidence            3332 3   899999999999 9999999999999999887763 5566667899999999999998  77999999999


Q ss_pred             EEEEEEcCc
Q 020107          265 FAVVKVGGE  273 (331)
Q Consensus       265 ~~~~~~~~~  273 (331)
                      +++|++...
T Consensus       217 lr~Wd~~sg  225 (390)
T KOG3914|consen  217 LRLWDITSG  225 (390)
T ss_pred             EEEEecccC
Confidence            999999873

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=1.1e-07  Score=82.77  Aligned_cols=287  Identities=13%  Similarity=0.101  Sum_probs=177.3

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCC--------CCC
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGN--------AGP   83 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~   83 (331)
                      -.++.|+|.+    ++|.|+           ...|.+-|....+ .+.. ...|...|+.++|.|.+--        ..-
T Consensus        18 ~~A~Dw~~~G----LiAygs-----------hslV~VVDs~s~q-~iqs-ie~h~s~V~~VrWap~~~p~~llS~~~~~l   80 (1062)
T KOG1912|consen   18 RNAADWSPSG----LIAYGS-----------HSLVSVVDSRSLQ-LIQS-IELHQSAVTSVRWAPAPSPRDLLSPSSSQL   80 (1062)
T ss_pred             ccccccCccc----eEEEec-----------CceEEEEehhhhh-hhhc-cccCccceeEEEeccCCCchhccCccccce
Confidence            3466777765    899997           7788998887765 3333 3678899999999986311        133


Q ss_pred             eEEEEcCCccE-EEecCCCc------ccCccEEEEEEcC---CC-CeEEEEecCCeEEEEEccccceeeeeeeeccccee
Q 020107           84 FLAQADADGGL-LRDITGEK------ISSSMCLCLEWNP---SA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFEL  152 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v  152 (331)
                      +||++...|.| +||.....      .+..++..+.|-+   +. ..|++-.....|.+|+..+|+.  +-.........
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k--~Wk~~ys~~iL  158 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK--FWKYDYSHEIL  158 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce--eeccccCCcce
Confidence            68888899999 99987643      3577888888876   33 4577777788999999999864  44444445567


Q ss_pred             EEEeeCCCCCcEEEEEcCCCeEEEEEccCCC----ceeeeecccCCCc----------------c---------eEEEEE
Q 020107          153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESP----FKLAFQNSKIHKM----------------G---------VCCIAS  203 (331)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~----------------~---------v~~~~~  203 (331)
                      .|+.+.|.+...+..-+..|.+.+-+.-..+    ..+.++....|.+                .         ...++|
T Consensus       159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf  238 (1062)
T KOG1912|consen  159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF  238 (1062)
T ss_pred             eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence            7899999888877777778888777653211    1222222112222                0         123456


Q ss_pred             ecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCC-eEEEEEecCcEEEEEEcCcc--------
Q 020107          204 IPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPG-LVLAACMHNGFAVVKVGGEK--------  274 (331)
Q Consensus       204 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------  274 (331)
                      +|.-.+.+. ......+.++|++-. .++.. ..-..+.+.-+.+-|+... .+++.-.++.+.+|.-....        
T Consensus       239 ~p~~rn~lf-i~~prellv~dle~~-~~l~v-vpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~  315 (1062)
T KOG1912|consen  239 SPHWRNILF-ITFPRELLVFDLEYE-CCLAV-VPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA  315 (1062)
T ss_pred             ChhhhceEE-EEeccceEEEcchhh-ceeEE-EEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch
Confidence            774344443 345677999999874 55554 2333445666777776544 44555566665555543321        


Q ss_pred             ------cceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          275 ------AEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       275 ------~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                            +.....+.. .+-........|..+        ..++..= .+|.+.+|.+.++.+
T Consensus       316 ~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~--------sa~avl~-s~g~~~~w~l~~~ri  368 (1062)
T KOG1912|consen  316 SLSMDLGEQVHVVRPMEEFRPVIGASCPSTP--------SALAVLY-SSGDSTFWQLSNGRI  368 (1062)
T ss_pred             hhccccccceEEEeechhcccceeecCCCCh--------hhhhhhh-hcchhHHHhhhcCCc
Confidence                  111111111 112233444555543        4444444 588899999987654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.01  E-value=2.4e-06  Score=70.44  Aligned_cols=223  Identities=13%  Similarity=0.111  Sum_probs=127.4

Q ss_pred             CCCcEEEEeccCcccceEEeEeee------cCcEeEEEEcCCCCCCCCeEEEEcCC--ccE-EEecCCCcccCccEEEEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMD------TAGIFDIKWSPVGGNAGPFLAQADAD--GGL-LRDITGEKISSSMCLCLE  112 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~l~~~~~d--g~i-iw~~~~~~~~~~~v~~~~  112 (331)
                      ++..|.+||..+.+ ....+..+.      ......++++|+    +++|++...+  ..+ +.|+.+.+...    .+.
T Consensus        75 ~~d~V~v~D~~t~~-~~~~i~~p~~p~~~~~~~~~~~~ls~d----gk~l~V~n~~p~~~V~VvD~~~~kvv~----ei~  145 (352)
T TIGR02658        75 RTDYVEVIDPQTHL-PIADIELPEGPRFLVGTYPWMTSLTPD----NKTLLFYQFSPSPAVGVVDLEGKAFVR----MMD  145 (352)
T ss_pred             CCCEEEEEECccCc-EEeEEccCCCchhhccCccceEEECCC----CCEEEEecCCCCCEEEEEECCCCcEEE----EEe
Confidence            57899999999986 444332211      112447899999    9999988754  555 88888876521    111


Q ss_pred             EcCCCCeEEEE--------ecCCeEEEEEccccceeeeee---eecccceeEE-EeeCCCCCcEEEEEcCCCeEEEEEcc
Q 020107          113 WNPSATSITVG--------LSDGSVSIVSVVESQLEVLQQ---WKAHEFELWA-TSFDVHQPHMVYTGSDDCKFSGWDIR  180 (331)
Q Consensus       113 ~~~~~~~l~~~--------~~dg~i~i~d~~~~~~~~~~~---~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~i~d~~  180 (331)
                      . |++..++..        +.||......+.+........   +.....++.. -.|.+.++.++..... |.|.+.|+.
T Consensus       146 v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~  223 (352)
T TIGR02658       146 V-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLS  223 (352)
T ss_pred             C-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecC
Confidence            1 333333333        345554444333311111111   1110000000 0334435566666555 999999965


Q ss_pred             CCCc-----eeeeecc----cCCCcceEEEEEecCCCCEEEEEe----------cCCeEEEEEecCCCCCceeeeeecCC
Q 020107          181 ESPF-----KLAFQNS----KIHKMGVCCIASIPSDSNTLLTGS----------YDEYLRVWDVRSISKPVNETSVCLGG  241 (331)
Q Consensus       181 ~~~~-----~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~  241 (331)
                      ....     ...+...    .-....+.-++++| +++.+++..          ..+.|.++|..+. +.+..  ..-..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~-kvi~~--i~vG~  299 (352)
T TIGR02658       224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKTG-KRLRK--IELGH  299 (352)
T ss_pred             CCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCCC-eEEEE--EeCCC
Confidence            4322     2222110    01234445599999 777776642          1257999999885 44554  45567


Q ss_pred             ceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEe
Q 020107          242 GVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETY  281 (331)
Q Consensus       242 ~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  281 (331)
                      .+..++++|+++..++++. .++.+.+++...  .+.+.++
T Consensus       300 ~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t--~k~i~~i  338 (352)
T TIGR02658       300 EIDSINVSQDAKPLLYALSTGDKTLYIFDAET--GKELSSV  338 (352)
T ss_pred             ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC--CeEEeee
Confidence            8999999999853555554 567788888766  4666665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=1.9e-09  Score=90.01  Aligned_cols=195  Identities=14%  Similarity=0.090  Sum_probs=131.0

Q ss_pred             EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-------------ccCccEEEEEEcCCCCeEEEEecCC
Q 020107           62 YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-------------ISSSMCLCLEWNPSATSITVGLSDG  127 (331)
Q Consensus        62 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~dg  127 (331)
                      +.+|+..|..++--.+    ..-+++++.|.++ +|.+....             .|+.+|.++.|-.+.+++++  .||
T Consensus       731 f~GH~~~iRai~AidN----ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~  804 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDN----ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDG  804 (1034)
T ss_pred             ccCcHHHhHHHHhccc----ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccC
Confidence            4678888888876666    6789999999999 99987532             26888999998887776654  578


Q ss_pred             eEEEEEccccceeeeeeeecccceeEEEeeCCC-CCcEEEEE-cCCCeEEEEEccCCCceeeeecc--cCCCcceEEEEE
Q 020107          128 SVSIVSVVESQLEVLQQWKAHEFELWATSFDVH-QPHMVYTG-SDDCKFSGWDIRESPFKLAFQNS--KIHKMGVCCIAS  203 (331)
Q Consensus       128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~  203 (331)
                      .|.+||.--++...........+.+..+..-|+ +...++++ +...+|+++|.|.......++.-  ++...-+++++.
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            999999876654221122222233333433332 44555554 78899999999988766666552  334567899999


Q ss_pred             ecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEE
Q 020107          204 IPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAV  267 (331)
Q Consensus       204 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  267 (331)
                      .| .|+.++.+-..|+|.+.|.|++ +.+.. ..+.......++--.+  +.++.+..+..+.+
T Consensus       885 a~-~GN~lAa~LSnGci~~LDaR~G-~vINs-wrpmecdllqlaapsd--q~L~~saldHslaV  943 (1034)
T KOG4190|consen  885 AD-KGNKLAAALSNGCIAILDARNG-KVINS-WRPMECDLLQLAAPSD--QALAQSALDHSLAV  943 (1034)
T ss_pred             cc-CcchhhHHhcCCcEEEEecCCC-ceecc-CCcccchhhhhcCchh--HHHHhhcccceeEe
Confidence            99 9999999999999999999996 33332 2333333444442222  44444445544433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.99  E-value=4e-09  Score=79.76  Aligned_cols=152  Identities=14%  Similarity=0.130  Sum_probs=100.6

Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-----CCeEEEEEecCCCCCceee
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-----DEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~  235 (331)
                      ..+.++++..||.+.+++.+.-  .+.....+.-...-.+.++.. .++.+.++..     -+..+.|+++..+..+.. 
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-  175 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS-  175 (319)
T ss_pred             cCCceEecCCCceEEEEechHH--Hhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeeccccccccccc-
Confidence            3467999999999999998862  111111011111122223333 3444444432     234667777764433333 


Q ss_pred             eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107          236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY  315 (331)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~  315 (331)
                       ......|.+++-+|....++++++.++.+.+|+.++. ..+...+..|+.+++.+-|+|..+        ..|++++ +
T Consensus       176 -~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~p--------~~Lft~s-e  244 (319)
T KOG4714|consen  176 -KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKNP--------EHLFTCS-E  244 (319)
T ss_pred             -ccccccchhhhCCcccccEEEEecCCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCCc--------hheeEec-C
Confidence             2233449999999987566666666666778888776 455666789999999999999998        7899999 9


Q ss_pred             CCeEEEEcCCCc
Q 020107          316 DRLLRIWMPESD  327 (331)
Q Consensus       316 d~~i~iW~~~~~  327 (331)
                      ||.+-.||..+.
T Consensus       245 dGslw~wdas~~  256 (319)
T KOG4714|consen  245 DGSLWHWDASTT  256 (319)
T ss_pred             CCcEEEEcCCCc
Confidence            999999998754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.99  E-value=6.9e-06  Score=65.59  Aligned_cols=212  Identities=14%  Similarity=0.076  Sum_probs=131.7

Q ss_pred             EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc---cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee
Q 020107           71 DIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI---SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK  146 (331)
Q Consensus        71 ~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  146 (331)
                      ++.|.+..   +.++++--..+.+ .|+..+...   .......+.+...+..|+++...+ +.++|+.+++.+.+....
T Consensus         4 gp~~d~~~---g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRD---GRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTT---TEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCC---CEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence            46777742   5666666667777 666666543   122367778873335566665544 455699888766665553


Q ss_pred             --c-ccceeEEEeeCCCCCcEEEEEcCC--------CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE-EE
Q 020107          147 --A-HEFELWATSFDVHQPHMVYTGSDD--------CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL-TG  214 (331)
Q Consensus       147 --~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~  214 (331)
                        . .....+.+++.| ++++.++....        |.|..++.. ++......    .-...+.|+|+| +++.|+ +-
T Consensus        80 ~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~----~~~~pNGi~~s~-dg~~lyv~d  152 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD----GLGFPNGIAFSP-DGKTLYVAD  152 (246)
T ss_dssp             TTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE----EESSEEEEEEET-TSSEEEEEE
T ss_pred             CCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec----CcccccceEECC-cchheeecc
Confidence              1 346788999998 77777765533        557777776 44333332    345678999999 887655 66


Q ss_pred             ecCCeEEEEEecCCCCCcee--eeee-cC--CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCccee
Q 020107          215 SYDEYLRVWDVRSISKPVNE--TSVC-LG--GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAY  289 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~--~~~~-~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  289 (331)
                      +..+.|..+++......+..  .+.. ..  +..-.+++..++ .++++....+.+  +.+... ++.+..+.-....++
T Consensus       153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I--~~~~p~-G~~~~~i~~p~~~~t  228 (246)
T PF08450_consen  153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRI--VVFDPD-GKLLREIELPVPRPT  228 (246)
T ss_dssp             TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEE--EEEETT-SCEEEEEE-SSSSEE
T ss_pred             cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEE--EEECCC-ccEEEEEcCCCCCEE
Confidence            67889999999754332221  1111 12  247789999986 566555556664  444444 677777775556899


Q ss_pred             eeeec-CCC
Q 020107          290 GADWQ-RGR  297 (331)
Q Consensus       290 ~~~~~-~~~  297 (331)
                      +++|. ++.
T Consensus       229 ~~~fgg~~~  237 (246)
T PF08450_consen  229 NCAFGGPDG  237 (246)
T ss_dssp             EEEEESTTS
T ss_pred             EEEEECCCC
Confidence            99994 454

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=1.9e-07  Score=81.33  Aligned_cols=239  Identities=13%  Similarity=0.123  Sum_probs=166.2

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE------EEecCCCcccCccEEEEEEcCCC------------CeEEEEecCCe
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL------LRDITGEKISSSMCLCLEWNPSA------------TSITVGLSDGS  128 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i------iw~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~  128 (331)
                      ..-.++.|+|.+     +||-|+..-..      +.-++.-+.|+..|+.+.|.|-.            -.||++...|.
T Consensus        16 sN~~A~Dw~~~G-----LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr   90 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-----LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR   90 (1062)
T ss_pred             ccccccccCccc-----eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence            336788999984     77777766554      33344455688999999998721            24777778999


Q ss_pred             EEEEEccccceeeeeeeecccceeEEEeeCCC--C-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107          129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVH--Q-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP  205 (331)
Q Consensus       129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  205 (331)
                      |.+||...+..  +..+..+..++..++|-|.  + ...|++-....++.+|+..+|+.......   ......|+.+.|
T Consensus        91 Iil~d~~~~s~--~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y---s~~iLs~f~~DP  165 (1062)
T KOG1912|consen   91 IILVDFVLASV--INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY---SHEILSCFRVDP  165 (1062)
T ss_pred             EEEEEehhhhh--hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc---CCcceeeeeeCC
Confidence            99999987644  5667778889999999863  2 36777778889999999999986655554   456678899999


Q ss_pred             CCCCEEEEEecCCeEEEEEecCCCC---Ccee--eeeecCC-------------------------ceEEEEECCCCCCe
Q 020107          206 SDSNTLLTGSYDEYLRVWDVRSISK---PVNE--TSVCLGG-------------------------GVWRIKHHPFIPGL  255 (331)
Q Consensus       206 ~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~--~~~~~~~-------------------------~v~~~~~~~~~~~~  255 (331)
                      ++...+..-+..|.+.+-+.-....   +.++  +...|..                         -...++|+|.-++.
T Consensus       166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~  245 (1062)
T KOG1912|consen  166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI  245 (1062)
T ss_pred             CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence            9988888888888888776643221   1111  1112221                         01236788987565


Q ss_pred             EEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          256 VLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ++++ ....+.++++.-+  ..+....-..+.+-=++|-|+..       ...|...- .||.+.+|-...
T Consensus       246 lfi~-~prellv~dle~~--~~l~vvpier~~akfv~vlP~~~-------rd~LfclH-~nG~ltirvrk~  305 (1062)
T KOG1912|consen  246 LFIT-FPRELLVFDLEYE--CCLAVVPIERGGAKFVDVLPDPR-------RDALFCLH-SNGRLTIRVRKE  305 (1062)
T ss_pred             EEEE-eccceEEEcchhh--ceeEEEEeccCCcceeEeccCCC-------cceEEEEe-cCCeEEEEEeec
Confidence            5554 5677778887664  55555554455566678888753       25777777 899999997654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.97  E-value=7.4e-06  Score=65.42  Aligned_cols=217  Identities=14%  Similarity=0.045  Sum_probs=134.9

Q ss_pred             eeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc
Q 020107           13 DAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG   92 (331)
Q Consensus        13 ~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg   92 (331)
                      .++.|.+...  .++.+-.          ..+.|+.|+..+..  ...+   .......+++...    +..|+.+...+
T Consensus         3 Egp~~d~~~g--~l~~~D~----------~~~~i~~~~~~~~~--~~~~---~~~~~~G~~~~~~----~g~l~v~~~~~   61 (246)
T PF08450_consen    3 EGPVWDPRDG--RLYWVDI----------PGGRIYRVDPDTGE--VEVI---DLPGPNGMAFDRP----DGRLYVADSGG   61 (246)
T ss_dssp             EEEEEETTTT--EEEEEET----------TTTEEEEEETTTTE--EEEE---ESSSEEEEEEECT----TSEEEEEETTC
T ss_pred             cceEEECCCC--EEEEEEc----------CCCEEEEEECCCCe--EEEE---ecCCCceEEEEcc----CCEEEEEEcCc
Confidence            4567777432  6666665          68999999998874  3222   1223777788843    23555555555


Q ss_pred             cEEEecCCCcc-----------cCccEEEEEEcCCCCeEEEEecC--------CeEEEEEccccceeeeeeeecccceeE
Q 020107           93 GLLRDITGEKI-----------SSSMCLCLEWNPSATSITVGLSD--------GSVSIVSVVESQLEVLQQWKAHEFELW  153 (331)
Q Consensus        93 ~iiw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~v~  153 (331)
                      ..+.+..+++.           .....+.+++.++|++.++....        |.|..++.. ++..   .+...-...+
T Consensus        62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~---~~~~~~~~pN  137 (246)
T PF08450_consen   62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT---VVADGLGFPN  137 (246)
T ss_dssp             EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE---EEEEEESSEE
T ss_pred             eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE---EEecCccccc
Confidence            55456555422           34567889999999976665543        567777776 4432   2222344578


Q ss_pred             EEeeCCCCCc-EEEEEcCCCeEEEEEccCCCc----eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107          154 ATSFDVHQPH-MVYTGSDDCKFSGWDIRESPF----KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       154 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      .++|+| +++ ++++-+..+.|..+++.....    ...+..........-.+++.. ++++.++....+.|.++|.+ +
T Consensus       138 Gi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G  214 (246)
T PF08450_consen  138 GIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-G  214 (246)
T ss_dssp             EEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-S
T ss_pred             ceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-c
Confidence            999999 555 556778889999999975432    122222121223478899999 89888887788999999987 3


Q ss_pred             CCCceeeeeecCCceEEEEEC-CCCCCeEEEE
Q 020107          229 SKPVNETSVCLGGGVWRIKHH-PFIPGLVLAA  259 (331)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~  259 (331)
                       +.+..+..+ ...+++++|. ++...+++++
T Consensus       215 -~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  215 -KLLREIELP-VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -CEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred             -cEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence             445543333 3589999994 5553455544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=2.8e-09  Score=89.06  Aligned_cols=207  Identities=13%  Similarity=0.105  Sum_probs=136.2

Q ss_pred             cCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-----cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107          104 SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-----SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWD  178 (331)
Q Consensus       104 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  178 (331)
                      |...|..++--.+.+.+++++.|.+|++|.++.     +...+..+++.|..+|.++.|-. +...+++  .||.|++||
T Consensus       734 H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--cD~giHlWD  810 (1034)
T KOG4190|consen  734 HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--CDGGIHLWD  810 (1034)
T ss_pred             cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--ccCcceeec
Confidence            444555554444667899999999999999875     22235667889999999999986 5555554  489999999


Q ss_pred             ccCCCceeeeecccCCCcceEEEEEecC-CCCEEEE-EecCCeEEEEEecCCCCCceeee----eecCCceEEEEECCCC
Q 020107          179 IRESPFKLAFQNSKIHKMGVCCIASIPS-DSNTLLT-GSYDEYLRVWDVRSISKPVNETS----VCLGGGVWRIKHHPFI  252 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~  252 (331)
                      .--++....+...+.| +.+..+..-|. +..++.. ++...+|+++|.|..+- ..++.    ...++.+.+++..|.|
T Consensus       811 PFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kVcna~~Pna~~R~iaVa~~G  888 (1034)
T KOG4190|consen  811 PFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-TCELKVCNAPGPNALTRAIAVADKG  888 (1034)
T ss_pred             ccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccc-eeeEEeccCCCCchheeEEEeccCc
Confidence            9877765544432222 22333333331 3444444 47889999999998532 22211    1233568889999987


Q ss_pred             CCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE-EcCCCccc
Q 020107          253 PGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI-WMPESDCL  329 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i-W~~~~~~~  329 (331)
                       +.++++-+.+.+.+.+.++  +..+..++.-......++- |.+         +.++... .|.++.+ |..-++.+
T Consensus       889 -N~lAa~LSnGci~~LDaR~--G~vINswrpmecdllqlaa-psd---------q~L~~sa-ldHslaVnWhaldgim  952 (1034)
T KOG4190|consen  889 -NKLAAALSNGCIAILDARN--GKVINSWRPMECDLLQLAA-PSD---------QALAQSA-LDHSLAVNWHALDGIM  952 (1034)
T ss_pred             -chhhHHhcCCcEEEEecCC--CceeccCCcccchhhhhcC-chh---------HHHHhhc-ccceeEeeehhcCCee
Confidence             6666666778866666665  6777777665554444442 333         5777777 7888888 87766643

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=5.6e-09  Score=82.12  Aligned_cols=162  Identities=11%  Similarity=0.087  Sum_probs=110.2

Q ss_pred             EEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC-----ceeeeecccCCC
Q 020107          121 TVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP-----FKLAFQNSKIHK  195 (331)
Q Consensus       121 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~  195 (331)
                      ++.+.+-.|.+-+++++-.   ..+. ....|.++.|.- ..+++..|.++|.|..+|+|...     +...+.    |.
T Consensus       228 fs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly----h~  298 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY----HD  298 (425)
T ss_pred             ecccccceeEEEEeecccc---cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE----cC
Confidence            4555667788889988642   3343 566799999985 78999999999999999999762     122222    89


Q ss_pred             cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC--ceeeeeecCCceEEEEE--CCCCCCeEEEEEecCcEEEEEEc
Q 020107          196 MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP--VNETSVCLGGGVWRIKH--HPFIPGLVLAACMHNGFAVVKVG  271 (331)
Q Consensus       196 ~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  271 (331)
                      ..|+++.....++.+|++.+.+|+|++||+|..+..  +.+ ..+|-..-.-+-+  .+. ++.++++|.|--.++|.+.
T Consensus       299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q-YeGHvN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ-YEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceee-eecccccccccccccccc-cceEEEccCeeEEEEEecc
Confidence            999999887767889999999999999999985432  222 2344332222222  233 3677777766667888888


Q ss_pred             CcccceeEEeecC----CcceeeeeecC
Q 020107          272 GEKAEVLETYAKH----GSLAYGADWQR  295 (331)
Q Consensus       272 ~~~~~~~~~~~~h----~~~v~~~~~~~  295 (331)
                      .  +.++.++.-.    ...+.+++|..
T Consensus       377 ~--ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  377 S--GHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             c--CceeeccCCCCccccccccceehhc
Confidence            7  5666666532    22344555543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.93  E-value=3.2e-06  Score=65.51  Aligned_cols=190  Identities=16%  Similarity=0.248  Sum_probs=122.4

Q ss_pred             CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccce-EEe--EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEe
Q 020107           22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNL-ELL--YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRD   97 (331)
Q Consensus        22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~-~~~--~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~   97 (331)
                      ++|++||+-.           |..|.|=...+.-..+ ...  .+.....-+.++|||+    +.+||.+...|++ ++|
T Consensus         7 ~~Gk~lAi~q-----------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD----~tlLa~a~S~G~i~vfd   71 (282)
T PF15492_consen    7 SDGKLLAILQ-----------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD----CTLLAYAESTGTIRVFD   71 (282)
T ss_pred             CCCcEEEEEe-----------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC----CcEEEEEcCCCeEEEEe
Confidence            4558888886           8888887766543222 222  1212334789999999    9999999999999 777


Q ss_pred             cCCCcc------------cCccEEEEEEcCCC------CeEEEEecCCeEEEEEcccc---ceeeeeee--e-cccceeE
Q 020107           98 ITGEKI------------SSSMCLCLEWNPSA------TSITVGLSDGSVSIVSVVES---QLEVLQQW--K-AHEFELW  153 (331)
Q Consensus        98 ~~~~~~------------~~~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~---~~~~~~~~--~-~~~~~v~  153 (331)
                      +.+..+            -...|..+.|.+..      ..|++-...|.++-|-+..+   +......+  . .+...|.
T Consensus        72 l~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~  151 (282)
T PF15492_consen   72 LMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN  151 (282)
T ss_pred             cccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence            765433            13456666665422      24677777888888776432   22222222  2 2356899


Q ss_pred             EEeeCCCCCcEEEEEcC-C----------CeEEEEEccCCCcee-----------------------e---eecccCCCc
Q 020107          154 ATSFDVHQPHMVYTGSD-D----------CKFSGWDIRESPFKL-----------------------A---FQNSKIHKM  196 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~~-d----------g~i~i~d~~~~~~~~-----------------------~---~~~~~~~~~  196 (331)
                      ++.++| .-++|+.|+. .          .-+.-|.+-++..-.                       .   +........
T Consensus       152 ~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d  230 (282)
T PF15492_consen  152 SAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQD  230 (282)
T ss_pred             EEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCC
Confidence            999999 5466665542 1          135566554322100                       0   000012366


Q ss_pred             ceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107          197 GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       197 ~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      .|..|..+| ++..||+...+|.|.+|++.+.
T Consensus       231 ~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  231 GIFKMSLSP-DGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             ceEEEEECC-CCCEEEEEEcCCeEEEEecCcc
Confidence            799999999 9999999999999999999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.93  E-value=4.5e-09  Score=57.35  Aligned_cols=39  Identities=23%  Similarity=0.489  Sum_probs=36.1

Q ss_pred             cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107          275 AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       275 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~  323 (331)
                      ++++.++.+|.+.|++++|+|++         .+|++++ .|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~---------~~~~s~~-~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDG---------NFLASGS-SDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTS---------SEEEEEE-TTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEeccc---------ccceeeC-CCCEEEEEC
Confidence            36788999999999999999998         7999999 999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.86  E-value=6.5e-06  Score=70.27  Aligned_cols=260  Identities=11%  Similarity=0.023  Sum_probs=138.0

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI  103 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~  103 (331)
                      ..+.+++          .+|.+..+|..+++...+.....  ........  +    +..+++++.+|.+ .++..+++.
T Consensus        66 ~~v~v~~----------~~g~v~a~d~~tG~~~W~~~~~~--~~~~~p~v--~----~~~v~v~~~~g~l~ald~~tG~~  127 (377)
T TIGR03300        66 GKVYAAD----------ADGTVVALDAETGKRLWRVDLDE--RLSGGVGA--D----GGLVFVGTEKGEVIALDAEDGKE  127 (377)
T ss_pred             CEEEEEC----------CCCeEEEEEccCCcEeeeecCCC--CcccceEE--c----CCEEEEEcCCCEEEEEECCCCcE
Confidence            4566665          58899999988776222211111  11111111  2    4467777777777 555544332


Q ss_pred             c-----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccccee-----EEEeeCCCCCcEEEEEcCCCe
Q 020107          104 S-----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFEL-----WATSFDVHQPHMVYTGSDDCK  173 (331)
Q Consensus       104 ~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~  173 (331)
                      .     ...+.+.... .+..+++++.+|.|..+|.++++.  +-.+.......     .+....  + ..++.+..++.
T Consensus       128 ~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~--~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~  201 (377)
T TIGR03300       128 LWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGER--LWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGK  201 (377)
T ss_pred             eeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCce--eeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCE
Confidence            1     1111110000 345778888899999999998764  32222211111     011111  2 46778888899


Q ss_pred             EEEEEccCCCceeeeecccCCC-cc---eEEEEEec-CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEE
Q 020107          174 FSGWDIRESPFKLAFQNSKIHK-MG---VCCIASIP-SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKH  248 (331)
Q Consensus       174 i~i~d~~~~~~~~~~~~~~~~~-~~---v~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  248 (331)
                      +..+|.++++............ ..   ...+.-+| ..+..+++++.+|.+..||.++++. +..  ..... ......
T Consensus       202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~-~W~--~~~~~-~~~p~~  277 (377)
T TIGR03300       202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV-LWK--RDASS-YQGPAV  277 (377)
T ss_pred             EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE-EEe--eccCC-ccCceE
Confidence            9999999887544332200000 00   00010011 0245778888899999999988643 222  12211 112222


Q ss_pred             CCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc-ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          249 HPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS-LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                        .+ +.+++...++.+..++...  ++.+........ .......  .+         ..|+.++ .+|.|+++|..++
T Consensus       278 --~~-~~vyv~~~~G~l~~~d~~t--G~~~W~~~~~~~~~~ssp~i--~g---------~~l~~~~-~~G~l~~~d~~tG  340 (377)
T TIGR03300       278 --DD-NRLYVTDADGVVVALDRRS--GSELWKNDELKYRQLTAPAV--VG---------GYLVVGD-FEGYLHWLSREDG  340 (377)
T ss_pred             --eC-CEEEEECCCCeEEEEECCC--CcEEEccccccCCccccCEE--EC---------CEEEEEe-CCCEEEEEECCCC
Confidence              22 5666666777766666644  455444321111 1111111  22         4778888 8999999999887


Q ss_pred             cc
Q 020107          328 CL  329 (331)
Q Consensus       328 ~~  329 (331)
                      .+
T Consensus       341 ~~  342 (377)
T TIGR03300       341 SF  342 (377)
T ss_pred             CE
Confidence            64

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.85  E-value=5e-06  Score=76.28  Aligned_cols=257  Identities=11%  Similarity=0.007  Sum_probs=140.4

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+.++.|....   +-+..+.          ..|.|.+-|..+..  +... ..-..+|.+++|+|+    ++.++..+.
T Consensus        70 ~i~s~~fl~d~---~~i~v~~----------~~G~iilvd~et~~--~eiv-g~vd~GI~aaswS~D----ee~l~liT~  129 (1265)
T KOG1920|consen   70 EIVSVQFLADT---NSICVIT----------ALGDIILVDPETLE--LEIV-GNVDNGISAASWSPD----EELLALITG  129 (1265)
T ss_pred             ceEEEEEeccc---ceEEEEe----------cCCcEEEEcccccc--eeee-eeccCceEEEeecCC----CcEEEEEeC
Confidence            45566666655   5555565          69999999887764  4444 334678999999999    999999999


Q ss_pred             CccEEEecCCCccc-CccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee---eeeeee-----cccceeEEEeeCCCC
Q 020107           91 DGGLLRDITGEKIS-SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE---VLQQWK-----AHEFELWATSFDVHQ  161 (331)
Q Consensus        91 dg~iiw~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~-----~~~~~v~~~~~~~~~  161 (331)
                      .++++........- ..+. ...-.+.++.+ .++....=.-+.-..++..   .+...+     .....=+.+.|-- +
T Consensus       130 ~~tll~mT~~f~~i~E~~L-~~d~~~~sk~v-~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-D  206 (1265)
T KOG1920|consen  130 RQTLLFMTKDFEPIAEKPL-DADDERKSKFV-NVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-D  206 (1265)
T ss_pred             CcEEEEEeccccchhcccc-ccccccccccc-eecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-C
Confidence            88883332221110 0111 11111222222 2222111111111111110   000000     0111234688985 8


Q ss_pred             CcEEEEE-----cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCCCce
Q 020107          162 PHMVYTG-----SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISKPVN  233 (331)
Q Consensus       162 ~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~  233 (331)
                      +.++++.     .....|++||.. +. ......  .....=.+++|-| .|..+++-.   .|+.|.+|.-.....--.
T Consensus       207 g~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se--~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f  281 (1265)
T KOG1920|consen  207 GEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSE--PVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEF  281 (1265)
T ss_pred             CcEEEEEEEeccCCceeEEEeccc-ch-hhcccC--cccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCcccccc
Confidence            8888873     333799999987 43 222221  0233446799999 888888864   456788887654322111


Q ss_pred             ee-eeecCCceEEEEECCCCCCeEEE---EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107          234 ET-SVCLGGGVWRIKHHPFIPGLVLA---ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       234 ~~-~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  298 (331)
                      .+ +.....++..++|+.++ ..+++   ......+++|.+.+...-+.+.+.-.....  +.|+|..+
T Consensus       282 ~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~  347 (1265)
T KOG1920|consen  282 VLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTE  347 (1265)
T ss_pred             ccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCc
Confidence            10 12223349999999986 44443   223344888888776544445554333332  77887654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=3.4e-07  Score=80.05  Aligned_cols=182  Identities=12%  Similarity=0.031  Sum_probs=123.7

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceee
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEV  141 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  141 (331)
                      ..+.+++++..      +|+-|+.+|.+ +.+.....    .|...      ..+|+++++++.||.|.|..+-+.+.  
T Consensus        40 D~is~~av~~~------~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~--  105 (846)
T KOG2066|consen   40 DAISCCAVHDK------FFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE--  105 (846)
T ss_pred             hHHHHHHhhcc------eeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCcc--
Confidence            45778887755      99999999999 66554432    12111      56899999999999999999887754  


Q ss_pred             eeeeecccceeEEEeeCCC----CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107          142 LQQWKAHEFELWATSFDVH----QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD  217 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  217 (331)
                      ...+. -..++.+++++|+    ....+++|+.-| +.++.-+--........ ..-.++|.++.|   .++++|-++.+
T Consensus       106 ~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l-~~~eG~I~~i~W---~g~lIAWand~  179 (846)
T KOG2066|consen  106 ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVL-SEGEGPIHSIKW---RGNLIAWANDD  179 (846)
T ss_pred             ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceee-ecCccceEEEEe---cCcEEEEecCC
Confidence            33333 3457999999995    356899999888 76765442211111112 226789999999   57899999877


Q ss_pred             CeEEEEEecCCCCCceeeeeecC-----CceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          218 EYLRVWDVRSISKPVNETSVCLG-----GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      | |++||.... +.+..+..++.     .-...+.|.++  ..++. |-.+.+.+..+...
T Consensus       180 G-v~vyd~~~~-~~l~~i~~p~~~~R~e~fpphl~W~~~--~~LVI-GW~d~v~i~~I~~~  235 (846)
T KOG2066|consen  180 G-VKVYDTPTR-QRLTNIPPPSQSVRPELFPPHLHWQDE--DRLVI-GWGDSVKICSIKKR  235 (846)
T ss_pred             C-cEEEecccc-ceeeccCCCCCCCCcccCCCceEecCC--CeEEE-ecCCeEEEEEEecc
Confidence            7 999999874 33333222221     12356888887  55544 46677888888843

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.83  E-value=5.9e-06  Score=70.53  Aligned_cols=244  Identities=14%  Similarity=0.057  Sum_probs=130.6

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeE-EEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEE-----
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFD-IKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCL-----  109 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~-----  109 (331)
                      .+|.++.+|..+++...+..   -...+.+ ...  .    +..++.+..+|.+ .+|..+++..     ..+..     
T Consensus       113 ~~g~l~ald~~tG~~~W~~~---~~~~~~~~p~v--~----~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~  183 (377)
T TIGR03300       113 EKGEVIALDAEDGKELWRAK---LSSEVLSPPLV--A----NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS  183 (377)
T ss_pred             CCCEEEEEECCCCcEeeeec---cCceeecCCEE--E----CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence            58999999988775222211   1111211 111  1    2356666667776 5555443320     00100     


Q ss_pred             -EEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccc--ce---eEEEeeCC-CCCcEEEEEcCCCeEEEEEccCC
Q 020107          110 -CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHE--FE---LWATSFDV-HQPHMVYTGSDDCKFSGWDIRES  182 (331)
Q Consensus       110 -~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~---v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~  182 (331)
                       +...  .+..++.+..+|.+..+|+++++..-...+....  ..   ...+.-+| -.+..++.++.+|.+..+|..++
T Consensus       184 ~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG  261 (377)
T TIGR03300       184 ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG  261 (377)
T ss_pred             CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence             0111  1246788888999999999887642111111000  00   00111111 02356777888999999999988


Q ss_pred             CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc-eEEEEECCCCCCeEEEEEe
Q 020107          183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG-VWRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~  261 (331)
                      +.......    . .......   .+..+++++.||.+..+|..+++ .+-.. ...... ......  .+ +.+++.+.
T Consensus       262 ~~~W~~~~----~-~~~~p~~---~~~~vyv~~~~G~l~~~d~~tG~-~~W~~-~~~~~~~~ssp~i--~g-~~l~~~~~  328 (377)
T TIGR03300       262 RVLWKRDA----S-SYQGPAV---DDNRLYVTDADGVVVALDRRSGS-ELWKN-DELKYRQLTAPAV--VG-GYLVVGDF  328 (377)
T ss_pred             cEEEeecc----C-CccCceE---eCCEEEEECCCCeEEEEECCCCc-EEEcc-ccccCCccccCEE--EC-CEEEEEeC
Confidence            75443332    1 1112222   45678888899999999998863 33221 111111 122222  12 56777777


Q ss_pred             cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107          262 HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW  322 (331)
                      ++.+.+++...  ++.+.++..+...+..--...++          .|+.++ .||.|+.+
T Consensus       329 ~G~l~~~d~~t--G~~~~~~~~~~~~~~~sp~~~~~----------~l~v~~-~dG~l~~~  376 (377)
T TIGR03300       329 EGYLHWLSRED--GSFVARLKTDGSGIASPPVVVGD----------GLLVQT-RDGDLYAF  376 (377)
T ss_pred             CCEEEEEECCC--CCEEEEEEcCCCccccCCEEECC----------EEEEEe-CCceEEEe
Confidence            78766666544  78887777655444333233333          466666 79999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.82  E-value=2.5e-09  Score=90.72  Aligned_cols=199  Identities=17%  Similarity=0.162  Sum_probs=134.3

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC--------cccCccEEEEEEcC-CCCeEEEEec----CCeEEE
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE--------KISSSMCLCLEWNP-SATSITVGLS----DGSVSI  131 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~--------~~~~~~v~~~~~~~-~~~~l~~~~~----dg~i~i  131 (331)
                      ...+.|++++.+..  ..++++|..+|.| +-.....        ..+..++++++|++ |.+.||+|-.    |..+.|
T Consensus        56 tqy~kcva~~y~~d--~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   56 TQYVKCVASFYGND--RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             CCCceeehhhcCCc--hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            45588888877632  4689999999999 4433321        12467889999998 4566777743    678999


Q ss_pred             EEccccceeee--eeeec-ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC
Q 020107          132 VSVVESQLEVL--QQWKA-HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS  208 (331)
Q Consensus       132 ~d~~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  208 (331)
                      ||+.+.--.|.  ..+.+ ......+++|-. +.+++.+|.....++++|+|..... ....   .+..+..+.+.|..+
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~-~~sv---nTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDS-VSSV---NTKYVQGITVDPFSP  208 (783)
T ss_pred             eecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhh-hhhh---hhhhcccceecCCCC
Confidence            99987511111  11222 334556888885 7788999999999999999954322 2222   355677788899888


Q ss_pred             CEEEEEecCCeEEEEE-ecCCCCCceeeee---ecCCceEEEEECCCCCCeEEEEEec-CcEEEEEEcC
Q 020107          209 NTLLTGSYDEYLRVWD-VRSISKPVNETSV---CLGGGVWRIKHHPFIPGLVLAACMH-NGFAVVKVGG  272 (331)
Q Consensus       209 ~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  272 (331)
                      +++++-. |+.|.+|| .++.+.++.....   .....+..++|+|...+++++...+ ..|+.+++..
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            9988876 99999999 6766666655211   1123589999999886766665544 3445565543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=5.4e-08  Score=79.36  Aligned_cols=210  Identities=11%  Similarity=0.002  Sum_probs=140.5

Q ss_pred             cCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-cceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-CCeEEEEEccC
Q 020107          104 SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-DCKFSGWDIRE  181 (331)
Q Consensus       104 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  181 (331)
                      |...|+.+ +....+++.+++-||.++.|.... .-.+.+..+..|...+.+++.+- ++.++.+.+. |..++++|+.+
T Consensus         8 hrd~i~hv-~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    8 HRDVITHV-FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             ccceeeeE-eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence            44445544 334567899999999999998765 33455677788999999999885 8888888777 99999999987


Q ss_pred             CCceeeeecccCCCcceEEEEEecCCC--C-EEEE-EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE
Q 020107          182 SPFKLAFQNSKIHKMGVCCIASIPSDS--N-TLLT-GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL  257 (331)
Q Consensus       182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  257 (331)
                      -.....+..    ......+.|....+  . .+++ .-.++.+.++|-+....+......-|..+|..+.+.+.+ ..++
T Consensus        86 ~DminmiKL----~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~v  160 (558)
T KOG0882|consen   86 FDMINMIKL----VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAV  160 (558)
T ss_pred             cchhhhccc----ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-ccee
Confidence            665444443    22222333332122  1 3333 346789999999876555555457899999999999986 3343


Q ss_pred             EEEecCcEEEEEEcCc----ccceeEE---------eecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          258 AACMHNGFAVVKVGGE----KAEVLET---------YAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       258 ~~~~~~~~~~~~~~~~----~~~~~~~---------~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                      +....+-+..|.....    ..++...         +.-......++.|+|++         ..+.+-+ .|..|+++++
T Consensus       161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g---------~qistl~-~DrkVR~F~~  230 (558)
T KOG0882|consen  161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG---------AQISTLN-PDRKVRGFVF  230 (558)
T ss_pred             eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc---------CcccccC-cccEEEEEEe
Confidence            4333343344443310    0111111         11234567889999999         6899999 9999999999


Q ss_pred             CCcccC
Q 020107          325 ESDCLT  330 (331)
Q Consensus       325 ~~~~~~  330 (331)
                      .++.+.
T Consensus       231 KtGklv  236 (558)
T KOG0882|consen  231 KTGKLV  236 (558)
T ss_pred             ccchhh
Confidence            888653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.80  E-value=1.9e-09  Score=91.47  Aligned_cols=206  Identities=16%  Similarity=0.174  Sum_probs=137.8

Q ss_pred             ccEEEEEEcCCC--CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc----CCCeEEEEEc
Q 020107          106 SMCLCLEWNPSA--TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS----DDCKFSGWDI  179 (331)
Q Consensus       106 ~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~i~d~  179 (331)
                      ..+.|+++..+.  ..+++|..+|.|.+-..+......-....++....++++|++-+.+.|++|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            345567665543  4688999999999998876433223344567889999999998778888875    4568999999


Q ss_pred             cCC--CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE
Q 020107          180 RES--PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL  257 (331)
Q Consensus       180 ~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  257 (331)
                      .+.  .+........+......+++|.. +.+++.+|.....++++|+|.......   .-....+..+...|-..++ +
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~---svnTk~vqG~tVdp~~~nY-~  211 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVS---SVNTKYVQGITVDPFSPNY-F  211 (783)
T ss_pred             ccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhh---hhhhhhcccceecCCCCCc-e
Confidence            876  22222221111344566899987 888999999999999999995311111   2233355667777744344 4


Q ss_pred             EEEecCcEEEEE-EcCcccceeEEeecCC----cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          258 AACMHNGFAVVK-VGGEKAEVLETYAKHG----SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       258 ~~~~~~~~~~~~-~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      ++..++-+.+|+ ..+. ..++..+...+    ..+..++|+|...        .++++.....++|+++++.
T Consensus       212 cs~~dg~iAiwD~~rni-enpl~~i~~~~N~~~~~l~~~aycPtrt--------glla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  212 CSNSDGDIAIWDTYRNI-ENPLQIILRNENKKPKQLFALAYCPTRT--------GLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eccccCceeeccchhhh-ccHHHHHhhCCCCcccceeeEEeccCCc--------chhhhhccCcceEEEeccc
Confidence            555688888888 3332 22333222222    2489999999876        7888888566899999974

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.76  E-value=3.8e-08  Score=53.61  Aligned_cols=38  Identities=16%  Similarity=0.437  Sum_probs=35.2

Q ss_pred             eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107          140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWD  178 (331)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  178 (331)
                      +++..+.+|...|++++|+| ++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            45788999999999999999 789999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=3.6e-06  Score=74.48  Aligned_cols=197  Identities=12%  Similarity=0.186  Sum_probs=132.4

Q ss_pred             EEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccce-eEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCC--
Q 020107          112 EWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFE-LWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESP--  183 (331)
Q Consensus       112 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~--  183 (331)
                      +|++.+..++.|+.+|.|.+.+-.   .+.+..++.+... |..+ +.-++.++|++.+.|+     .|++||+...+  
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS---FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc---ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            467888999999999999888743   2335677777766 4444 3333556787777654     58999997531  


Q ss_pred             ----ce---eeeec-ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC--CCCceeeeeecCCceEEEEECCCCC
Q 020107          184 ----FK---LAFQN-SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI--SKPVNETSVCLGGGVWRIKHHPFIP  253 (331)
Q Consensus       184 ----~~---~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~  253 (331)
                          +.   ..+.. .+....++.+++.+. +-..+|.|-.+|.|.++.-+-.  +............+|+.+++..++.
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~  184 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK  184 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence                22   11221 122467789999998 7888999999999998843221  1112222345577999999999875


Q ss_pred             CeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          254 GLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ..++++ ....+.++.+...+ .....+..|...+.+..+++..+         .++.++  +..|.+|+.+.
T Consensus       185 s~lFv~-Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~---------qfIca~--~e~l~fY~sd~  244 (933)
T KOG2114|consen  185 SVLFVA-TTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTY---------QFICAG--SEFLYFYDSDG  244 (933)
T ss_pred             eeEEEE-ecceeEEEEecCCC-cceeeeccCCccceeeecCCCCc---------cEEEec--CceEEEEcCCC
Confidence            533333 45667888888653 44566778888899999988763         344444  67888888764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.74  E-value=1.6e-06  Score=73.69  Aligned_cols=109  Identities=17%  Similarity=0.290  Sum_probs=82.6

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEE----cCCccE-----EEecCCCcc---------cCccEEEEEEcCCCCeEEEEecCCe
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQA----DADGGL-----LRDITGEKI---------SSSMCLCLEWNPSATSITVGLSDGS  128 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~----~~dg~i-----iw~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~  128 (331)
                      ....++.|+-..+   ..+.+.    +.+|.+     ++++...+.         .++.+.+++++|+.+.++.|+.||+
T Consensus       206 ~dPl~~~Fs~~~~---~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS  282 (545)
T PF11768_consen  206 NDPLDVEFSLNQP---YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS  282 (545)
T ss_pred             CCcEEEEccCCCC---cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe
Confidence            3457888887643   344442    345555     777766544         3677889999999999999999999


Q ss_pred             EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107          129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP  183 (331)
Q Consensus       129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  183 (331)
                      |.+||...+.    ..+....-..+.++|+| ++..+++|+..|.+.+||+.-..
T Consensus       283 iiLyD~~~~~----t~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  283 IILYDTTRGV----TLLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEEEcCCCe----eeeeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence            9999987653    22333456688999999 88999999999999999997554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=1.1e-05  Score=69.28  Aligned_cols=197  Identities=8%  Similarity=0.024  Sum_probs=109.3

Q ss_pred             cEEEEEEcCCCCe-EEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC--CeEEEEEcc
Q 020107          107 MCLCLEWNPSATS-ITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--CKFSGWDIR  180 (331)
Q Consensus       107 ~v~~~~~~~~~~~-l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~  180 (331)
                      ......|+|+++. ++..+.   +..|.++|+.+++...+..   ..+......|+|+...++++.+.+  ..|.++|+.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            5678899999985 554433   3568999998876544433   334455678999444455555444  568888887


Q ss_pred             CCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE
Q 020107          181 ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL  257 (331)
Q Consensus       181 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  257 (331)
                      ++.. ..+..   +........|+| +++.|+..+ ..+  .|.+.|+..++.  ......  +. ....|+|+++.+++
T Consensus       266 ~g~~-~~LT~---~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~--g~-~~~~~SPDG~~Ia~  335 (419)
T PRK04043        266 TKTL-TQITN---YPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFH--GK-NNSSVSTYKNYIVY  335 (419)
T ss_pred             CCcE-EEccc---CCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCe--EeCccC--CC-cCceECCCCCEEEE
Confidence            7763 33333   233334567999 887666655 333  577777766432  121111  11 23589999844444


Q ss_pred             EEEec------CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC--eEEEEcCCCc
Q 020107          258 AACMH------NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR--LLRIWMPESD  327 (331)
Q Consensus       258 ~~~~~------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~--~i~iW~~~~~  327 (331)
                      +....      +...++-+.-..+. ...+... .......|+|++         +.|+-.+...+  .|.+.+++..
T Consensus       336 ~~~~~~~~~~~~~~~I~v~d~~~g~-~~~LT~~-~~~~~p~~SPDG---------~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        336 SSRETNNEFGKNTFNLYLISTNSDY-IRRLTAN-GVNQFPRFSSDG---------GSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEcCCCcccCCCCcEEEEEECCCCC-eEECCCC-CCcCCeEECCCC---------CEEEEEEccCCcEEEEEEecCCC
Confidence            44322      21234443322222 2333332 223358899999         45544431222  3556666543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=2.8e-06  Score=74.53  Aligned_cols=184  Identities=15%  Similarity=0.115  Sum_probs=128.7

Q ss_pred             ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107          106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK  185 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (331)
                      ..+.|+++  .++.|+.|+.+|.|++++....   + .....|...      . .++.++++|+.||+|.|-.+-+.+..
T Consensus        40 D~is~~av--~~~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s~~------~-~~Gey~asCS~DGkv~I~sl~~~~~~  106 (846)
T KOG2066|consen   40 DAISCCAV--HDKFFALGTHRGAVYLTTCQGN---P-KTNFDHSSS------I-LEGEYVASCSDDGKVVIGSLFTDDEI  106 (846)
T ss_pred             hHHHHHHh--hcceeeeccccceEEEEecCCc---c-ccccccccc------c-cCCceEEEecCCCcEEEeeccCCccc
Confidence            34455555  3578999999999999997643   1 233334433      3 47899999999999999999988876


Q ss_pred             eeeecccCCCcceEEEEEecC----CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107          186 LAFQNSKIHKMGVCCIASIPS----DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       186 ~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  261 (331)
                      ..+..    ..++.+|+++|+    ..+.+++||.-| +.++.-+-.+...........|+|.++.|..+    +++=.+
T Consensus       107 ~~~df----~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~----lIAWan  177 (846)
T KOG2066|consen  107 TQYDF----KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN----LIAWAN  177 (846)
T ss_pred             eeEec----CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc----EEEEec
Confidence            66665    778999999993    257899999988 87776554333222234677899999999954    667778


Q ss_pred             cCcEEEEEEcCcccceeEEeecCCc------ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          262 HNGFAVVKVGGEKAEVLETYAKHGS------LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~h~~------~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      +.|+++++....  +.+..+.....      .-..+.|.+..          .|+.|  +.-+|+|..+.
T Consensus       178 d~Gv~vyd~~~~--~~l~~i~~p~~~~R~e~fpphl~W~~~~----------~LVIG--W~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDGVKVYDTPTR--QRLTNIPPPSQSVRPELFPPHLHWQDED----------RLVIG--WGDSVKICSIK  233 (846)
T ss_pred             CCCcEEEecccc--ceeeccCCCCCCCCcccCCCceEecCCC----------eEEEe--cCCeEEEEEEe
Confidence            999999998774  33333332111      22357787775          44444  46678887776

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=5e-07  Score=72.85  Aligned_cols=100  Identities=13%  Similarity=0.094  Sum_probs=81.3

Q ss_pred             EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC
Q 020107          129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS  208 (331)
Q Consensus       129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  208 (331)
                      +++.+..+  +.....+.++...|.+++|+|.+..++..++.+.+|+|.|+++......+..   + ..+.+++|.-++.
T Consensus       175 v~~l~~~~--fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a---~-~~~wSC~wDlde~  248 (463)
T KOG1645|consen  175 VQKLESHD--FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA---Y-NQIWSCCWDLDER  248 (463)
T ss_pred             eEEeccCC--cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec---c-CCceeeeeccCCc
Confidence            44444433  2334456678889999999997766899999999999999999887777776   4 7899999998778


Q ss_pred             CEEEEEecCCeEEEEEecCCCCCcee
Q 020107          209 NTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       209 ~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      ++++.|-..|.|.+||++..+.++.+
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~~~~~e  274 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPEGPLME  274 (463)
T ss_pred             ceeEEeccCceEEEEEccCCCchHhh
Confidence            89999999999999999997766655

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.63  E-value=5.3e-06  Score=70.65  Aligned_cols=162  Identities=15%  Similarity=0.135  Sum_probs=101.2

Q ss_pred             EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc----CCCe----EEEEEccCCCceeeeecccCCCcceEE
Q 020107          129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS----DDCK----FSGWDIRESPFKLAFQNSKIHKMGVCC  200 (331)
Q Consensus       129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~----i~i~d~~~~~~~~~~~~~~~~~~~v~~  200 (331)
                      +.++.+..++.+.+..... +....++.|+..+++.+.+..    .+|.    -++|+....+....-...-+....|.+
T Consensus       186 l~L~~~~~~klEvL~yirT-E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~  264 (545)
T PF11768_consen  186 LHLLSCSGGKLEVLSYIRT-ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC  264 (545)
T ss_pred             EEEEEecCCcEEEEEEEEe-cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence            4444444444444444433 233467888865666666643    3343    356777655432211111126888999


Q ss_pred             EEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc------
Q 020107          201 IASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK------  274 (331)
Q Consensus       201 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  274 (331)
                      ++++| ++..|+.|+.||.|.+||....   +.. .....-.++.++|+|++ ..+++++..+.+.+||+.-..      
T Consensus       265 ca~sp-~E~kLvlGC~DgSiiLyD~~~~---~t~-~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALspi~~qLl  338 (545)
T PF11768_consen  265 CARSP-SEDKLVLGCEDGSIILYDTTRG---VTL-LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALSPIKMQLL  338 (545)
T ss_pred             EecCc-ccceEEEEecCCeEEEEEcCCC---eee-eeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecCccceeec
Confidence            99999 9999999999999999999864   222 23445668899999997 677777777888999875432      


Q ss_pred             -----cceeEEee---cCCcceeeeeecCCC
Q 020107          275 -----AEVLETYA---KHGSLAYGADWQRGR  297 (331)
Q Consensus       275 -----~~~~~~~~---~h~~~v~~~~~~~~~  297 (331)
                           ++..-.+.   .+...+..+.|.+..
T Consensus       339 sEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  339 SEDATPKSTLQLSKYFRVSSSLVHIQWAPAP  369 (545)
T ss_pred             cccCCCccEEeeehhccCcchhheeEeccCC
Confidence                 11111122   345567788888543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.62  E-value=4.7e-06  Score=73.78  Aligned_cols=108  Identities=19%  Similarity=0.310  Sum_probs=82.2

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      ...-+.|+|..   .+||++++..      .+.|.|.||--.... .....+..|   +++++|+|.    .-.|+.|-.
T Consensus        17 vsti~SWHPse---PlfAVA~fS~------er~GSVtIfadtGEP-qr~Vt~P~h---atSLCWHpe----~~vLa~gwe   79 (1416)
T KOG3617|consen   17 VSTISSWHPSE---PLFAVASFSP------ERGGSVTIFADTGEP-QRDVTYPVH---ATSLCWHPE----EFVLAQGWE   79 (1416)
T ss_pred             cccccccCCCC---ceeEEEEecC------CCCceEEEEecCCCC-Cccccccee---hhhhccChH----HHHHhhccc
Confidence            44556777777   5999998642      258899998544332 222222333   556999999    778999999


Q ss_pred             CccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107           91 DGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus        91 dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  135 (331)
                      -|.+ +|...+.+.      |+.+|..+.|+++|..++++..-|.|.+|...
T Consensus        80 ~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   80 MGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            9998 998877554      68889999999999999999999999999876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.61  E-value=8.1e-08  Score=84.87  Aligned_cols=201  Identities=15%  Similarity=0.176  Sum_probs=137.4

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .-.|++|+...   +.|++|+          -.|.|++|++.++.  .......|..+|+-+.-+.+    +..+++.+.
T Consensus      1103 ~fTc~afs~~~---~hL~vG~----------~~Geik~~nv~sG~--~e~s~ncH~SavT~vePs~d----gs~~Ltsss 1163 (1516)
T KOG1832|consen 1103 LFTCIAFSGGT---NHLAVGS----------HAGEIKIFNVSSGS--MEESVNCHQSAVTLVEPSVD----GSTQLTSSS 1163 (1516)
T ss_pred             ceeeEEeecCC---ceEEeee----------ccceEEEEEccCcc--ccccccccccccccccccCC----cceeeeecc
Confidence            34577777666   8999999          59999999999986  44555789999999998888    777776666


Q ss_pred             CccE---EEecCCCc--cc-CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeee-ee---cccceeEEEeeCCC
Q 020107           91 DGGL---LRDITGEK--IS-SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQ-WK---AHEFELWATSFDVH  160 (331)
Q Consensus        91 dg~i---iw~~~~~~--~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~---~~~~~v~~~~~~~~  160 (331)
                      -...   +|+....-  .| -....++.|+.....-+.|+.-....+||+.++..  +.+ +.   +....-++..|+| 
T Consensus      1164 ~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~--l~tylt~~~~~~y~~n~a~FsP- 1240 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSP--LQTYLTDTVTSSYSNNLAHFSP- 1240 (1516)
T ss_pred             ccCchHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcH--HHHhcCcchhhhhhccccccCC-
Confidence            6654   99987622  12 23456788887766667777767889999998753  332 21   2223336888999 


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      ...+++   .||.  +||.|..+.+..|..   ... -..-.|+| .++.++..++     |||+|+. +.+..   ...
T Consensus      1241 ~D~LIl---ndGv--LWDvR~~~aIh~FD~---ft~-~~~G~FHP-~g~eVIINSE-----IwD~RTF-~lLh~---VP~ 1301 (1516)
T KOG1832|consen 1241 CDTLIL---NDGV--LWDVRIPEAIHRFDQ---FTD-YGGGGFHP-SGNEVIINSE-----IWDMRTF-KLLHS---VPS 1301 (1516)
T ss_pred             CcceEe---eCce--eeeeccHHHHhhhhh---hee-cccccccC-CCceEEeech-----hhhhHHH-HHHhc---Ccc
Confidence            556655   3564  799998877666655   221 22345899 8988888765     8999986 33332   111


Q ss_pred             CceEEEEECCCC
Q 020107          241 GGVWRIKHHPFI  252 (331)
Q Consensus       241 ~~v~~~~~~~~~  252 (331)
                      -.-..+.|+..|
T Consensus      1302 Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1302 LDQCAVTFNSTG 1313 (1516)
T ss_pred             ccceEEEeccCc
Confidence            123456777664

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.60  E-value=2.1e-06  Score=76.41  Aligned_cols=174  Identities=15%  Similarity=0.061  Sum_probs=122.2

Q ss_pred             eEEEEcCCccE-EEecCCCccc------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107           84 FLAQADADGGL-LRDITGEKIS------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  156 (331)
                      .++.|+-...+ ..|+.+.+.+      .+.|.-++  .+++.+++|...|+|.+-|.++.+  .+.++..|.+.+.++.
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~--~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFE--TIHTFDAHSGSISDFD  224 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCc--eeeeeeccccceeeee
Confidence            44444444444 5555554432      22344443  367889999999999999998764  5899999999998887


Q ss_pred             eCCCCCcEEEEEcC---------CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          157 FDVHQPHMVYTGSD---------DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       157 ~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      .   .+++|++++.         |..|+|||+|..+.+..++.   +.++ .-+.|+|.-...+++++..|...+-|..+
T Consensus       225 v---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~  297 (1118)
T KOG1275|consen  225 V---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT  297 (1118)
T ss_pred             c---cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence            5   4588888874         56789999999887777776   3333 66788996678899999999999999544


Q ss_pred             CCCCcee--eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107          228 ISKPVNE--TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK  269 (331)
Q Consensus       228 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (331)
                      ...|...  ........+..+.+++++ ..++.+-.++.+.+|.
T Consensus       298 lsNP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  298 LSNPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cCCCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence            4344222  123445569999999996 5555555566666665

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.4e-05  Score=64.73  Aligned_cols=235  Identities=13%  Similarity=0.095  Sum_probs=135.7

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+..++|+|+..  -++..++          .+..|+|.|+++..  ....+..+ ..+++++|.-+.   ..+|..|..
T Consensus       195 ~IrdlafSp~~~--GLl~~as----------l~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde---~h~IYaGl~  256 (463)
T KOG1645|consen  195 FIRDLAFSPFNE--GLLGLAS----------LGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDE---RHVIYAGLQ  256 (463)
T ss_pred             hhhhhccCcccc--ceeeeec----------cCceEEEEecccce--eeeheecc-CCceeeeeccCC---cceeEEecc
Confidence            466788888873  3777777          79999999999875  44444445 789999999885   668999999


Q ss_pred             CccE-EEecCCCccc---------CccEEEEEEcC------CCCeEEEEecCCeEEEEEccc--cceeeeeeeeccccee
Q 020107           91 DGGL-LRDITGEKIS---------SSMCLCLEWNP------SATSITVGLSDGSVSIVSVVE--SQLEVLQQWKAHEFEL  152 (331)
Q Consensus        91 dg~i-iw~~~~~~~~---------~~~v~~~~~~~------~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~v  152 (331)
                      +|.+ ++|++..+.+         ..+|..++.-+      .+..++....  .+..|++.-  +.+.++..+. ..+..
T Consensus       257 nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele-~pG~c  333 (463)
T KOG1645|consen  257 NGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELE-PPGIC  333 (463)
T ss_pred             CceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccC-CCcce
Confidence            9999 9998875442         34455544433      2333333333  234565543  2232333332 34556


Q ss_pred             EEEeeCCCCCcEEEEEcCCC------eEEE-EEccCCCceeeeecccCC-Cc---c--eEEEEEecCCCCEE-EEEecCC
Q 020107          153 WATSFDVHQPHMVYTGSDDC------KFSG-WDIRESPFKLAFQNSKIH-KM---G--VCCIASIPSDSNTL-LTGSYDE  218 (331)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg------~i~i-~d~~~~~~~~~~~~~~~~-~~---~--v~~~~~~~~~~~~l-~~~~~d~  218 (331)
                      .++..++...+.+++.-.+.      .+-+ -|-+.+..  +....+.+ ..   +  -+...+.+.+.+++ .++...+
T Consensus       334 ismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~p--Vc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn  411 (463)
T KOG1645|consen  334 ISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFP--VCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN  411 (463)
T ss_pred             eeeeecCccceEEEEecCCCCCccceeeeeeeccccCce--eeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence            67777764455555543321      1111 11111111  11000001 00   0  01111222133444 4455667


Q ss_pred             eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107          219 YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG  271 (331)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (331)
                      .+.+||..+. ..+..  .+...+|..++......+-+++.-.++.+++++..
T Consensus       412 ~lil~D~~s~-evvQ~--l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  412 ELILQDPHSF-EVVQT--LALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             eeEEeccchh-heeee--cccCcceeecceeecCCcchhhheecceEEEEecC
Confidence            8999999985 44444  56678899988776544667777788888887754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.56  E-value=0.00012  Score=58.70  Aligned_cols=203  Identities=16%  Similarity=0.132  Sum_probs=119.4

Q ss_pred             cEEEEEEcCC-CCeEEEEecCC-eEEEEEccccceeeeeeeecccce--eEEEeeCCCCCcEEEEEcC-----CCeEEEE
Q 020107          107 MCLCLEWNPS-ATSITVGLSDG-SVSIVSVVESQLEVLQQWKAHEFE--LWATSFDVHQPHMVYTGSD-----DCKFSGW  177 (331)
Q Consensus       107 ~v~~~~~~~~-~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~-----dg~i~i~  177 (331)
                      ....++.+|. ...++.+-.-| ...+||..+++.  ...+....+.  --...|+| ++.+|++.-.     .|.|-||
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEE
Confidence            3456778884 44466665544 567889988764  2222221111  11347898 7888887643     5899999


Q ss_pred             Ecc-CCCceeeeecccCCCcceEEEEEecCCCCEEEEEe------------------cCCeEEEEEecCCCCCceee-e-
Q 020107          178 DIR-ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS------------------YDEYLRVWDVRSISKPVNET-S-  236 (331)
Q Consensus       178 d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~~-~-  236 (331)
                      |.. +.+.+.++..   |.-....+.+.| ++..|+++-                  ++.++.+.|.+++ ..+.+. + 
T Consensus        83 d~~~~~~ri~E~~s---~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp  157 (305)
T PF07433_consen   83 DAARGYRRIGEFPS---HGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELP  157 (305)
T ss_pred             ECcCCcEEEeEecC---CCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeecC
Confidence            999 4444555555   777778888999 886666652                  1223444444443 222221 1 


Q ss_pred             -eecCCceEEEEECCCCCCeEEEEEecCc-----EEEEEEcCcccceeEEee-------cCCcceeeeeecCCCCccccc
Q 020107          237 -VCLGGGVWRIKHHPFIPGLVLAACMHNG-----FAVVKVGGEKAEVLETYA-------KHGSLAYGADWQRGRSSLEGK  303 (331)
Q Consensus       237 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~~  303 (331)
                       ..|.-.|..+++.++  +.++.+....+     .-++-+... ++.+..+.       .-.+.+-++++++++.     
T Consensus       158 ~~~~~lSiRHLa~~~~--G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~-----  229 (305)
T PF07433_consen  158 PDLHQLSIRHLAVDGD--GTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGR-----  229 (305)
T ss_pred             ccccccceeeEEecCC--CcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCC-----
Confidence             235567888999988  55555543322     111222221 22222222       1235678999999983     


Q ss_pred             ccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          304 RKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       304 ~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                         .+.+|+= .-+.+.+||..++.+
T Consensus       230 ---~ia~tsP-rGg~~~~~d~~tg~~  251 (305)
T PF07433_consen  230 ---LIAVTSP-RGGRVAVWDAATGRL  251 (305)
T ss_pred             ---EEEEECC-CCCEEEEEECCCCCE
Confidence               3445555 889999999998865

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.53  E-value=2.1e-05  Score=72.34  Aligned_cols=203  Identities=14%  Similarity=0.154  Sum_probs=128.1

Q ss_pred             ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEc----cC
Q 020107          106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDI----RE  181 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~----~~  181 (331)
                      ..|.++.|..+.+.++.+...|.|.+.|.++...+.+..   -...|.+++|+| ++..++..+..+++.+-+-    -.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---VDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---ccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchh
Confidence            578899999999999999999999999988765543333   356799999999 8888888887777765433    11


Q ss_pred             CCc-------------------eeeeecccC------------------CCcceEEEEEecCCCCEEEEEe----cC-Ce
Q 020107          182 SPF-------------------KLAFQNSKI------------------HKMGVCCIASIPSDSNTLLTGS----YD-EY  219 (331)
Q Consensus       182 ~~~-------------------~~~~~~~~~------------------~~~~v~~~~~~~~~~~~l~~~~----~d-~~  219 (331)
                      .+.                   ...|.+..+                  -.+.=++|.|-- +|.++|+..    .+ ..
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCcee
Confidence            110                   111111000                  011224588988 899999843    23 79


Q ss_pred             EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE---ecCcEEEEEEcCcc-cceeEEeecCCcceeeeeecC
Q 020107          220 LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC---MHNGFAVVKVGGEK-AEVLETYAKHGSLAYGADWQR  295 (331)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~  295 (331)
                      |++||-.. .  +.....+..+.-.+++|-|.| ..+.+..   +++.|.++.-.... +...-.+......|..++|+.
T Consensus       224 irV~drEg-~--Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  224 IRVYDREG-A--LNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS  299 (1265)
T ss_pred             EEEecccc-h--hhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence            99999872 1  111123344455689999975 4443332   34444444433321 222222333344599999999


Q ss_pred             CCCcccccccCcEEEE---eecCCCeEEEEcCCCc
Q 020107          296 GRSSLEGKRKNSLVAT---CSFYDRLLRIWMPESD  327 (331)
Q Consensus       296 ~~~~~~~~~~~~~l~s---~~~~d~~i~iW~~~~~  327 (331)
                      ++         ..||.   .. ....|++|-+.+.
T Consensus       300 ~s---------diLAv~~~~~-e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  300 NS---------DILAVVTSNL-ENSLVQLWTTGNY  324 (1265)
T ss_pred             CC---------Cceeeeeccc-ccceEEEEEecCe
Confidence            98         57777   55 5566999988764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.51  E-value=0.00027  Score=56.05  Aligned_cols=212  Identities=13%  Similarity=-0.007  Sum_probs=116.0

Q ss_pred             CCccEEEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc
Q 020107           90 ADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS  169 (331)
Q Consensus        90 ~dg~iiw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  169 (331)
                      .+|..+|...-.......+..  ..+++..+++++.++.|..||..+++..-...+.......  ...   .+..++.++
T Consensus        11 ~tG~~~W~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~---~~~~v~v~~   83 (238)
T PF13360_consen   11 RTGKELWSYDLGPGIGGPVAT--AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--PVV---DGGRVYVGT   83 (238)
T ss_dssp             TTTEEEEEEECSSSCSSEEET--EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--EEE---ETTEEEEEE
T ss_pred             CCCCEEEEEECCCCCCCccce--EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--eee---ccccccccc
Confidence            356666666442211121111  2225677888889999999999888653233332111111  111   335566666


Q ss_pred             CCCeEEEEEccCCCceeee-ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc------
Q 020107          170 DDCKFSGWDIRESPFKLAF-QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG------  242 (331)
Q Consensus       170 ~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------  242 (331)
                      .++.|..+|..+++..... .....-........... .+..++.+..++.|..+|+++++ .+... ......      
T Consensus        84 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~-~~w~~-~~~~~~~~~~~~  160 (238)
T PF13360_consen   84 SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGK-LLWKY-PVGEPRGSSPIS  160 (238)
T ss_dssp             TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTE-EEEEE-ESSTT-SS--EE
T ss_pred             ceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCc-EEEEe-ecCCCCCCccee
Confidence            7889999999999876663 32100011122223333 46788888889999999999874 33331 112111      


Q ss_pred             ----e-EEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107          243 ----V-WRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR  317 (331)
Q Consensus       243 ----v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~  317 (331)
                          + ..+.+. +  +.++++..++.+..+++..  ++.+....  ...+..+ ....+         ..|+.++ .++
T Consensus       161 ~~~~~~~~~~~~-~--~~v~~~~~~g~~~~~d~~t--g~~~w~~~--~~~~~~~-~~~~~---------~~l~~~~-~~~  222 (238)
T PF13360_consen  161 SFSDINGSPVIS-D--GRVYVSSGDGRVVAVDLAT--GEKLWSKP--ISGIYSL-PSVDG---------GTLYVTS-SDG  222 (238)
T ss_dssp             EETTEEEEEECC-T--TEEEEECCTSSEEEEETTT--TEEEEEEC--SS-ECEC-EECCC---------TEEEEEE-TTT
T ss_pred             eecccccceEEE-C--CEEEEEcCCCeEEEEECCC--CCEEEEec--CCCccCC-ceeeC---------CEEEEEe-CCC
Confidence                1 222323 3  4666666666532334443  44443222  2223332 23444         4788787 899


Q ss_pred             eEEEEcCCCccc
Q 020107          318 LLRIWMPESDCL  329 (331)
Q Consensus       318 ~i~iW~~~~~~~  329 (331)
                      .|..||+.++..
T Consensus       223 ~l~~~d~~tG~~  234 (238)
T PF13360_consen  223 RLYALDLKTGKV  234 (238)
T ss_dssp             EEEEEETTTTEE
T ss_pred             EEEEEECCCCCE
Confidence            999999999864

...

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.49  E-value=7.2e-05  Score=65.14  Aligned_cols=153  Identities=19%  Similarity=0.188  Sum_probs=101.2

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEe-EeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELL-YRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      +...|++-.......+++.|+          ..|.+++|+-..+.  +... ..+-.+.+..+..+++    ..++|.|+
T Consensus        32 ~~~~v~lTc~dst~~~l~~Gs----------S~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~----e~lvAagt   95 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGS----------SAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSV----EYLVAAGT   95 (726)
T ss_pred             CcceEEEEEeecCCceEEEec----------ccceEEEEecCchh--hhcccccCccceEEEEEecch----hHhhhhhc
Confidence            344455555555568999998          89999999998875  2222 2233455667778888    78899999


Q ss_pred             CCccE-EEecCCC------------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce--eeeeeeecccceeEE
Q 020107           90 ADGGL-LRDITGE------------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL--EVLQQWKAHEFELWA  154 (331)
Q Consensus        90 ~dg~i-iw~~~~~------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~  154 (331)
                      ..|.+ ++.+...            +.|+..|++++|++++..+++|...|.|..-.+.....  -....+..-...|-.
T Consensus        96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQ  175 (726)
T KOG3621|consen   96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQ  175 (726)
T ss_pred             CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEE
Confidence            99998 4444432            22678999999999999999999999999988876210  112222334556777


Q ss_pred             EeeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107          155 TSFDVHQPHMVYTGSDDCKFSGWDIRESP  183 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  183 (331)
                      +...  +..+|++...-  ..+++.+.++
T Consensus       176 lD~~--q~~LLVStl~r--~~Lc~tE~et  200 (726)
T KOG3621|consen  176 LDYL--QSYLLVSTLTR--CILCQTEAET  200 (726)
T ss_pred             eecc--cceehHhhhhh--hheeecchhH
Confidence            7765  33444443322  3355655443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.47  E-value=0.00039  Score=55.76  Aligned_cols=230  Identities=10%  Similarity=0.063  Sum_probs=140.3

Q ss_pred             EeEEEEcCCCCCCCCeEEEEcCCccE--EEecCCCccc------Ccc-EE-EEEEcCCCCeEEEEec-----CCeEEEEE
Q 020107           69 IFDIKWSPVGGNAGPFLAQADADGGL--LRDITGEKIS------SSM-CL-CLEWNPSATSITVGLS-----DGSVSIVS  133 (331)
Q Consensus        69 v~~~~~~~~~~~~~~~l~~~~~dg~i--iw~~~~~~~~------~~~-v~-~~~~~~~~~~l~~~~~-----dg~i~i~d  133 (331)
                      ...++.+|..   ...++.+-.-|..  ++|..+++..      ... .+ .-.|+++|++|++.-.     .|.|-|||
T Consensus         7 gH~~a~~p~~---~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    7 GHGVAAHPTR---PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             ccceeeCCCC---CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            3456677743   5677777777777  7777766542      011 11 3469999999988743     68999999


Q ss_pred             ccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc------------------CCCeEEEEEccCCCceeeeecc-cCC
Q 020107          134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS------------------DDCKFSGWDIRESPFKLAFQNS-KIH  194 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~~-~~~  194 (331)
                      .. .....+.++..+.-.-..+.+.| ++..|+.+.                  .+-.+...|.++++.+...... ..|
T Consensus        84 ~~-~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~  161 (305)
T PF07433_consen   84 AA-RGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH  161 (305)
T ss_pred             Cc-CCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence            98 34456778887777777888998 665555542                  2345666777888766654441 227


Q ss_pred             CcceEEEEEecCCCCEEEEEecCCe-------EEEEEecCCCCCcee---eeeecCCceEEEEECCCCCCeEEEEEec-C
Q 020107          195 KMGVCCIASIPSDSNTLLTGSYDEY-------LRVWDVRSISKPVNE---TSVCLGGGVWRIKHHPFIPGLVLAACMH-N  263 (331)
Q Consensus       195 ~~~v~~~~~~~~~~~~l~~~~~d~~-------i~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~  263 (331)
                      +-.|+.+++.+ ++..++..-..|.       |-+++....-+.+..   ......+.+-+|++++++ ..+++++-- +
T Consensus       162 ~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~tsPrGg  239 (305)
T PF07433_consen  162 QLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTSPRGG  239 (305)
T ss_pred             ccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEECCCCC
Confidence            77899999998 7766555443332       333333221000000   012345678999999996 556565544 4


Q ss_pred             cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107          264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI  321 (331)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i  321 (331)
                      .+.+|+...  ++.+....-  ..+.+++-.+++          +++|.+  .|.+..
T Consensus       240 ~~~~~d~~t--g~~~~~~~l--~D~cGva~~~~~----------f~~ssG--~G~~~~  281 (305)
T PF07433_consen  240 RVAVWDAAT--GRLLGSVPL--PDACGVAPTDDG----------FLVSSG--QGQLIR  281 (305)
T ss_pred             EEEEEECCC--CCEeecccc--CceeeeeecCCc----------eEEeCC--CccEEE
Confidence            445554444  555554432  235566666654          788877  455433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.2e-05  Score=66.17  Aligned_cols=189  Identities=12%  Similarity=0.100  Sum_probs=132.6

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccC-cccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC-CccE-EEecCCC
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNA-EEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA-DGGL-LRDITGE  101 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i-iw~~~~~  101 (331)
                      +++.+++          -||.++.|.-.. ....+...+..|...|.+++.+.+    +.++.+.+. |..+ ++++...
T Consensus        21 ~fiiqAS----------lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d----g~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen   21 KFIIQAS----------LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD----GWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             heEEeee----------cchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc----ceeEeeccCcccceeEEEeecc
Confidence            6888888          699999998766 222344445668888999999999    888898777 8888 7777654


Q ss_pred             ccc-----CccEEEEEEcC-CC---CeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC
Q 020107          102 KIS-----SSMCLCLEWNP-SA---TSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD  171 (331)
Q Consensus       102 ~~~-----~~~v~~~~~~~-~~---~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  171 (331)
                      ...     ....-.+.|.. .|   ..++++. .+|.+.++|-.....+....-.-|..+|..+.+++ .++.+++....
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~  165 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDIS  165 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeecccc
Confidence            431     01111222322 22   1344443 48999999987654444444456899999999997 78889999999


Q ss_pred             CeEEEEEccC----CCc--eee------eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107          172 CKFSGWDIRE----SPF--KLA------FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       172 g~i~i~d~~~----~~~--~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      |.|.-|....    ++.  ...      +...+.......++.|+| ++..+.+-+.|..|++++.++++
T Consensus       166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence            9999999873    111  000      111122456688999999 99999999999999999998863

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.45  E-value=0.00015  Score=62.29  Aligned_cols=181  Identities=13%  Similarity=-0.000  Sum_probs=99.7

Q ss_pred             CeEEEEecCCeEEEEEccccceeeeeeeeccc--c---eeEEEeeCCC-CCcEEEEEcCCCeEEEEEccCCCceeeeecc
Q 020107          118 TSITVGLSDGSVSIVSVVESQLEVLQQWKAHE--F---ELWATSFDVH-QPHMVYTGSDDCKFSGWDIRESPFKLAFQNS  191 (331)
Q Consensus       118 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~---~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  191 (331)
                      ..++.++.+|.+..+|..+++..-...+....  .   ....+.-+|. .+..++.++.+|.+..+|..+++....... 
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-  284 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-  284 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-
Confidence            45777888999999999887542111111000  0   0111111220 234566677899999999999875443322 


Q ss_pred             cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC-ceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          192 KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG-GVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       192 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                         . ....+..   .+..++.++.++.+..+|..+++.....  ..... ...+.... +  +.+++...++.+..++.
T Consensus       285 ---~-~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~--~~~~~~~~~sp~v~-~--g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        285 ---G-SVNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQ--SDLLHRLLTAPVLY-N--GYLVVGDSEGYLHWINR  352 (394)
T ss_pred             ---C-CccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcc--cccCCCcccCCEEE-C--CEEEEEeCCCEEEEEEC
Confidence               1 1112222   4567778888999999999886432221  11111 11111221 2  66777777777666555


Q ss_pred             cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                      .+  ++.+...+-....+.+--...+          ..|+.++ .||.|+.+++
T Consensus       353 ~t--G~~~~~~~~~~~~~~s~P~~~~----------~~l~v~t-~~G~l~~~~~  393 (394)
T PRK11138        353 ED--GRFVAQQKVDSSGFLSEPVVAD----------DKLLIQA-RDGTVYAITR  393 (394)
T ss_pred             CC--CCEEEEEEcCCCcceeCCEEEC----------CEEEEEe-CCceEEEEeC
Confidence            44  6777666543333332111123          3666677 8999998765

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.43  E-value=7.1e-06  Score=71.13  Aligned_cols=150  Identities=12%  Similarity=0.057  Sum_probs=104.9

Q ss_pred             CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc
Q 020107          105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF  184 (331)
Q Consensus       105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  184 (331)
                      ...+.--+++..+++++.|+.-|.+++|+-..+... .....+....+..+..++ ...++++|+..|.|.++-+.....
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence            344545556778899999999999999998876542 222333455566777787 778999999999999999887443


Q ss_pred             eeeee---cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC---CCCceeeeeecCCceEEEEECCCCCCeEEE
Q 020107          185 KLAFQ---NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI---SKPVNETSVCLGGGVWRIKHHPFIPGLVLA  258 (331)
Q Consensus       185 ~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  258 (331)
                      .....   .-+.|...|++++|++ ++..+++|..-|+|.+-.+...   ..+... .....+.|-.+.....  .++++
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~-il~~ds~IVQlD~~q~--~LLVS  186 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQE-ILSEDSEIVQLDYLQS--YLLVS  186 (726)
T ss_pred             CcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccce-eeccCcceEEeecccc--eehHh
Confidence            22221   1233778999999999 9999999999999998887761   111122 3455677888877654  44444


Q ss_pred             EE
Q 020107          259 AC  260 (331)
Q Consensus       259 ~~  260 (331)
                      +.
T Consensus       187 tl  188 (726)
T KOG3621|consen  187 TL  188 (726)
T ss_pred             hh
Confidence            43

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=0.00011  Score=65.56  Aligned_cols=201  Identities=9%  Similarity=-0.025  Sum_probs=125.7

Q ss_pred             EEcCCCCCCCCeEEEEcCCccE-EEec-----CCCcccCcc-EEEEEEcCCCCeEEEEecCC-----eEEEEEcccc---
Q 020107           73 KWSPVGGNAGPFLAQADADGGL-LRDI-----TGEKISSSM-CLCLEWNPSATSITVGLSDG-----SVSIVSVVES---  137 (331)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~dg~i-iw~~-----~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~---  137 (331)
                      +|++.    +..++.|+.+|.+ +.+-     ...+..... +..+....+.++|++.+.|+     .|++|+++.-   
T Consensus        30 c~~s~----~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSS----TGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCC----CceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            35676    7799999999999 3222     222222233 44443333446777777654     4899999762   


Q ss_pred             c-eeeee--eeec-----ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc--CCCc-eeeeecccCCCcceEEEEEecC
Q 020107          138 Q-LEVLQ--QWKA-----HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR--ESPF-KLAFQNSKIHKMGVCCIASIPS  206 (331)
Q Consensus       138 ~-~~~~~--~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~-~~~~~~~~~~~~~v~~~~~~~~  206 (331)
                      . +.++.  .+..     ...++.+++.+. +-+.++.|-.+|.|..+.-.  ..+- ...+.  .....+|+.+.+.. 
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~--~~~~~pITgL~~~~-  181 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYS--HRGKEPITGLALRS-  181 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeee--ccCCCCceeeEEec-
Confidence            2 22331  1112     356788899986 67889999999999888532  1111 11122  12478899999987 


Q ss_pred             CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-cCC
Q 020107          207 DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-KHG  285 (331)
Q Consensus       207 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~  285 (331)
                      ++..++-...-..|.+|.+.. +.|.......|+.++.|..+++.. +.+++++ ...+.+|+....  ....++. +|.
T Consensus       182 d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~--~~cfaf~~g~k  256 (933)
T KOG2114|consen  182 DGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGR--GPCFAFEVGEK  256 (933)
T ss_pred             CCceeEEEEecceeEEEEecC-CCcceeeeccCCccceeeecCCCC-ccEEEec-CceEEEEcCCCc--ceeeeecCCCe
Confidence            666533333446799999985 346666567888999999999875 4455554 455566665543  4445555 555


Q ss_pred             c
Q 020107          286 S  286 (331)
Q Consensus       286 ~  286 (331)
                      .
T Consensus       257 k  257 (933)
T KOG2114|consen  257 K  257 (933)
T ss_pred             E
Confidence            4

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.41  E-value=0.00068  Score=57.24  Aligned_cols=262  Identities=10%  Similarity=0.054  Sum_probs=139.5

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee----------------cCcEeEEE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD----------------TAGIFDIK   73 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~----------------~~~v~~~~   73 (331)
                      .......|+|.+   +.+|...           ++.|++.+..++. ..+....+.                -+.-.++-
T Consensus        43 ~~~~~~~~sP~g---~~~~~v~-----------~~nly~~~~~~~~-~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~  107 (353)
T PF00930_consen   43 PKLQDAKWSPDG---KYIAFVR-----------DNNLYLRDLATGQ-ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVW  107 (353)
T ss_dssp             TTBSEEEE-SSS---TEEEEEE-----------TTEEEEESSTTSE-EEESES--TTTEEESB--HHHHHHTSSSSBSEE
T ss_pred             cccccceeecCC---CeeEEEe-----------cCceEEEECCCCC-eEEeccccceeEEcCccceeccccccccccceE
Confidence            456778888886   8999996           8999999887664 232222220                11236788


Q ss_pred             EcCCCCCCCCeEEEEcCCccE--EEecCCCccc---CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee---
Q 020107           74 WSPVGGNAGPFLAQADADGGL--LRDITGEKIS---SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW---  145 (331)
Q Consensus        74 ~~~~~~~~~~~l~~~~~dg~i--iw~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---  145 (331)
                      |||+    +++||....|-.-  .+.+......   ...+..+.+-.-|....    .-.+.++|+.+++...+...   
T Consensus       108 WSpd----~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~~~  179 (353)
T PF00930_consen  108 WSPD----SKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPNSL  179 (353)
T ss_dssp             E-TT----SSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS-------EEEEEEEESSSTCCCEE---HHH
T ss_pred             ECCC----CCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC----ceEEEEEECCCCcEEEeeecccc
Confidence            9999    8888887665443  2221111111   12344454432222211    12466788887764322222   


Q ss_pred             ecccceeEEEeeCCCCCc-EEEE-EcCC---CeEEEEEccCCCceeeeecccCCCcce---EEEEEe-cCCCCEEEEEec
Q 020107          146 KAHEFELWATSFDVHQPH-MVYT-GSDD---CKFSGWDIRESPFKLAFQNSKIHKMGV---CCIASI-PSDSNTLLTGSY  216 (331)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~-~l~~-~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~l~~~~~  216 (331)
                      ......+..+.|.+ ++. +++. ..++   ..+.+.|..++.........  ....|   ....+. +....++.....
T Consensus       180 ~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~--~~~Wv~~~~~~~~~~~~~~~~l~~s~~  256 (353)
T PF00930_consen  180 NPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET--SDGWVDVYDPPHFLGPDGNEFLWISER  256 (353)
T ss_dssp             HTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE--SSSSSSSSSEEEE-TTTSSEEEEEEET
T ss_pred             CCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec--CCcceeeecccccccCCCCEEEEEEEc
Confidence            23466789999998 555 3332 3333   35677888877654444331  22222   244444 535556666667


Q ss_pred             CCeEEEEEecCCCCCceeeeeecCCceEE-EEECCCCCCeEEEEEec--CcEEEEEEcCcccceeEEeecCCcceeeeee
Q 020107          217 DEYLRVWDVRSISKPVNETSVCLGGGVWR-IKHHPFIPGLVLAACMH--NGFAVVKVGGEKAEVLETYAKHGSLAYGADW  293 (331)
Q Consensus       217 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  293 (331)
                      ||.-+||-+......... +....-.|.. +.|+++++.+++.+..+  ....+|.+.-..+..+..+......-..+.|
T Consensus       257 ~G~~hly~~~~~~~~~~~-lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~  335 (353)
T PF00930_consen  257 DGYRHLYLYDLDGGKPRQ-LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASF  335 (353)
T ss_dssp             TSSEEEEEEETTSSEEEE-SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE
T ss_pred             CCCcEEEEEcccccceec-cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEE
Confidence            887666666553333222 3444555644 77888874444455432  2445666655423455556544443378999


Q ss_pred             cCCCC
Q 020107          294 QRGRS  298 (331)
Q Consensus       294 ~~~~~  298 (331)
                      ||++.
T Consensus       336 Spdg~  340 (353)
T PF00930_consen  336 SPDGK  340 (353)
T ss_dssp             -TTSS
T ss_pred             CCCCC
Confidence            99985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.32  E-value=0.00076  Score=57.26  Aligned_cols=241  Identities=12%  Similarity=0.038  Sum_probs=123.0

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcccC----ccEEEEEEcCCCCeEEEEecCCeEEEEEccc------
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKISS----SMCLCLEWNPSATSITVGLSDGSVSIVSVVE------  136 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------  136 (331)
                      .|+.+.|.++    ..-|+++...|.+ +|.....+...    ..-..+.+.+    +  ...++.-.+-|+..      
T Consensus         3 ~v~~vs~a~~----t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~----~--~~~~~~~~l~di~~r~~~~~   72 (395)
T PF08596_consen    3 SVTHVSFAPE----TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRR----F--SLNNSPGKLTDISDRAPPSL   72 (395)
T ss_dssp             -EEEEEEETT----TTEEEEEETTS-EEEEEEEE------------------S--------GGGSS-SEEE-GGG--TT-
T ss_pred             eEEEEEecCC----CceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccc----c--cccCCCcceEEehhhCCccc
Confidence            5889999999    7789999999999 76665543321    1111112211    0  11122223444443      


Q ss_pred             -cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc-----CCCcceEEEEEec----C
Q 020107          137 -SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK-----IHKMGVCCIASIP----S  206 (331)
Q Consensus       137 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~~~~~~----~  206 (331)
                       ..+.+...+....++|++++.+  +-.+++.|..+|.+.|.|+|.+..+..-....     .....|+++.|..    .
T Consensus        73 ~~gf~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~  150 (395)
T PF08596_consen   73 KEGFLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG  150 (395)
T ss_dssp             SEEEEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred             ccccCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence             1245555666678899999987  55789999999999999999876554432211     1345688888872    1


Q ss_pred             C---CCEEEEEecCCeEEEEEecC-CCCCce----eeeeecCCceEEEE-ECCCC-------------------CCeEEE
Q 020107          207 D---SNTLLTGSYDEYLRVWDVRS-ISKPVN----ETSVCLGGGVWRIK-HHPFI-------------------PGLVLA  258 (331)
Q Consensus       207 ~---~~~l~~~~~d~~i~iwd~~~-~~~~~~----~~~~~~~~~v~~~~-~~~~~-------------------~~~~~~  258 (331)
                      +   .-.+++|...|.+.+|.+.- ......    .....+.++|..+. ++.+.                   -.-+++
T Consensus       151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV  230 (395)
T PF08596_consen  151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV  230 (395)
T ss_dssp             SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred             CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence            2   25789999999999998862 111111    10113556666554 32111                   012455


Q ss_pred             EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          259 ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .+++..++++.....  +.........-....+.+-+...    ...+..|+.-- .+|.|+++.+..-
T Consensus       231 vvSe~~irv~~~~~~--k~~~K~~~~~~~~~~~~vv~~~~----~~~~~~Lv~l~-~~G~i~i~SLP~L  292 (395)
T PF08596_consen  231 VVSESDIRVFKPPKS--KGAHKSFDDPFLCSSASVVPTIS----RNGGYCLVCLF-NNGSIRIYSLPSL  292 (395)
T ss_dssp             EE-SSEEEEE-TT-----EEEEE-SS-EEEEEEEEEEEE-----EEEEEEEEEEE-TTSEEEEEETTT-
T ss_pred             EEcccceEEEeCCCC--cccceeeccccccceEEEEeecc----cCCceEEEEEE-CCCcEEEEECCCc
Confidence            566788889888774  32222222223334444532000    00115677776 8999999998763

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.30  E-value=0.00061  Score=58.65  Aligned_cols=222  Identities=9%  Similarity=-0.000  Sum_probs=115.2

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCC-CcccCccEEEEEEcCCCCeEEEEecCCeEEEE-Eccccceeeee
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITG-EKISSSMCLCLEWNPSATSITVGLSDGSVSIV-SVVESQLEVLQ  143 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~  143 (331)
                      .-....+.++|+    ++.+++++...-.++.... .....+......|.+. +.+|+-...+.|.++ +.+...   ..
T Consensus        32 ~~~p~~ls~npn----gr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~---~k  103 (443)
T PF04053_consen   32 EIYPQSLSHNPN----GRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV---VK  103 (443)
T ss_dssp             SS--SEEEE-TT----SSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T---T-
T ss_pred             CcCCeeEEECCC----CCEEEEEcCCEEEEEEccCCcccccCceeEEEEecC-ccEEEEECCCeEEEEEcCcccc---ce
Confidence            344789999999    8888885544434665322 2233455667889984 457777778899996 333221   22


Q ss_pred             eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEE
Q 020107          144 QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVW  223 (331)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw  223 (331)
                      .++. ...+..+-.    +.+|...+ ++.|.+||..+++.+..+..    . +|..+.|++ ++.+++..+.+ .+.++
T Consensus       104 ~i~~-~~~~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v----~-~vk~V~Ws~-~g~~val~t~~-~i~il  170 (443)
T PF04053_consen  104 SIKL-PFSVEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDV----S-AVKYVIWSD-DGELVALVTKD-SIYIL  170 (443)
T ss_dssp             -----SS-EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS------E-EEEEE-T-TSSEEEEE-S--SEEEE
T ss_pred             EEcC-CcccceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEec----C-CCcEEEEEC-CCCEEEEEeCC-eEEEE
Confidence            3322 112344432    56666665 44899999999987777764    2 489999999 89999888765 57777


Q ss_pred             EecCC---------CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107          224 DVRSI---------SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQ  294 (331)
Q Consensus       224 d~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  294 (331)
                      +....         -.............|.+.+|..+  -++.++  .+.++.  +.......+..+   ..+++=+...
T Consensus       171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT--~~~lkY--l~~Ge~~~i~~l---d~~~yllgy~  241 (443)
T PF04053_consen  171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT--SNHLKY--LVNGETGIIAHL---DKPLYLLGYL  241 (443)
T ss_dssp             EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE---TTEEEE--EETTEEEEEEE----SS--EEEEEE
T ss_pred             EecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc--CCeEEE--EEcCCcceEEEc---CCceEEEEEE
Confidence            65431         01122222344678999999986  333333  235544  333212333333   4567777777


Q ss_pred             CCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          295 RGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       295 ~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      +..         +.+.... .|+.|..+.++..
T Consensus       242 ~~~---------~~ly~~D-r~~~v~~~~ld~~  264 (443)
T PF04053_consen  242 PKE---------NRLYLID-RDGNVISYELDLS  264 (443)
T ss_dssp             TTT---------TEEEEE--TT--EEEEE--HH
T ss_pred             ccC---------CEEEEEE-CCCCEEEEEECHH
Confidence            755         4777777 7888888876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.27  E-value=9.2e-07  Score=78.48  Aligned_cols=196  Identities=13%  Similarity=0.142  Sum_probs=130.1

Q ss_pred             ecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-CC-eE
Q 020107           97 DITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-DC-KF  174 (331)
Q Consensus        97 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg-~i  174 (331)
                      ++....-+....+|++|+.+.+.|++|+..|.|++|++.+|..  .....+|..+|+-+.-+. ++..+++.+. .. ..
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc--cccccccccccccccccC-CcceeeeeccccCchH
Confidence            3444444678889999999999999999999999999999865  667889999999999886 5665555443 33 46


Q ss_pred             EEEEccCC-CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee---cCCceEEEEECC
Q 020107          175 SGWDIRES-PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC---LGGGVWRIKHHP  250 (331)
Q Consensus       175 ~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~  250 (331)
                      .+|++..- .....+       ..-.++.|+. ....-+.|.......+||+.+. .++..++.+   ....-+...|+|
T Consensus      1170 aLW~~~s~~~~~Hsf-------~ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~-~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF-------DEDKAVKFSN-SLQFRALGTEADDALLYDVQTC-SPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred             HHhccccccCccccc-------cccceeehhh-hHHHHHhcccccceEEEecccC-cHHHHhcCcchhhhhhccccccCC
Confidence            78998752 112222       2346788887 4444455655677999999996 444332222   122336788999


Q ss_pred             CCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          251 FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +.  .++-  .++-  +|+++..  +.+..|...+..+ .-.|+|.+         .-++.-+      .|||+.+-.
T Consensus      1241 ~D--~LIl--ndGv--LWDvR~~--~aIh~FD~ft~~~-~G~FHP~g---------~eVIINS------EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1241 CD--TLIL--NDGV--LWDVRIP--EAIHRFDQFTDYG-GGGFHPSG---------NEVIINS------EIWDMRTFK 1294 (1516)
T ss_pred             Cc--ceEe--eCce--eeeeccH--HHHhhhhhheecc-cccccCCC---------ceEEeec------hhhhhHHHH
Confidence            84  3433  2343  8999874  5555555433221 33588887         5677666      578876643

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.23  E-value=0.0021  Score=55.22  Aligned_cols=222  Identities=11%  Similarity=0.027  Sum_probs=113.2

Q ss_pred             CeEEEEcCCccE-EEecCCCccc-----CccEEE-EEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeE-E
Q 020107           83 PFLAQADADGGL-LRDITGEKIS-----SSMCLC-LEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW-A  154 (331)
Q Consensus        83 ~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~-~  154 (331)
                      ..++.++.+|.+ -+|..+++..     ...+.+ ...  .+..++++..+|.+..+|.++++.  +-.......... .
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~~  196 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAV--KWTVNLDVPSLTLR  196 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCE--eeeecCCCCccccc
Confidence            356667777776 4444433320     111111 011  245677788899999999998865  322221110000 0


Q ss_pred             EeeCCC-CCcEEEEEcCCCeEEEEEccCCCceeeeecccCC-Cc---ceEEEEEecC-CCCEEEEEecCCeEEEEEecCC
Q 020107          155 TSFDVH-QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH-KM---GVCCIASIPS-DSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       155 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~---~v~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      ..-+|. ....++.++.+|.+..+|..+++........... ..   ....+..+|. .+..++.++.++.+..+|..++
T Consensus       197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG  276 (394)
T PRK11138        197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG  276 (394)
T ss_pred             CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence            001110 1235667778999999999988765443321100 00   0111111120 2456777778999999999987


Q ss_pred             CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc-ceeeeeecCCCCcccccccCc
Q 020107          229 SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS-LAYGADWQRGRSSLEGKRKNS  307 (331)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~  307 (331)
                      +.....   .... ...+...  + +.+++...++.+..++..+  ++.+-....-.. ...+.... +          .
T Consensus       277 ~~~W~~---~~~~-~~~~~~~--~-~~vy~~~~~g~l~ald~~t--G~~~W~~~~~~~~~~~sp~v~-~----------g  336 (394)
T PRK11138        277 QIVWKR---EYGS-VNDFAVD--G-GRIYLVDQNDRVYALDTRG--GVELWSQSDLLHRLLTAPVLY-N----------G  336 (394)
T ss_pred             CEEEee---cCCC-ccCcEEE--C-CEEEEEcCCCeEEEEECCC--CcEEEcccccCCCcccCCEEE-C----------C
Confidence            433222   1111 1122222  2 5566666777766666543  444332221111 11111121 2          3


Q ss_pred             EEEEeecCCCeEEEEcCCCccc
Q 020107          308 LVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       308 ~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      .|+.++ .||.|+..|.+++..
T Consensus       337 ~l~v~~-~~G~l~~ld~~tG~~  357 (394)
T PRK11138        337 YLVVGD-SEGYLHWINREDGRF  357 (394)
T ss_pred             EEEEEe-CCCEEEEEECCCCCE
Confidence            677777 899999999888754

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.20  E-value=0.0017  Score=51.29  Aligned_cols=192  Identities=14%  Similarity=0.151  Sum_probs=108.5

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+..++|.|...  .++|+..          ..+.|.-++.+..  .++.+.-.-.+..-.|++..+    +.++++--
T Consensus        22 ~e~SGLTy~pd~~--tLfaV~d----------~~~~i~els~~G~--vlr~i~l~g~~D~EgI~y~g~----~~~vl~~E   83 (248)
T PF06977_consen   22 DELSGLTYNPDTG--TLFAVQD----------EPGEIYELSLDGK--VLRRIPLDGFGDYEGITYLGN----GRYVLSEE   83 (248)
T ss_dssp             S-EEEEEEETTTT--EEEEEET----------TTTEEEEEETT----EEEEEE-SS-SSEEEEEE-ST----TEEEEEET
T ss_pred             CCccccEEcCCCC--eEEEEEC----------CCCEEEEEcCCCC--EEEEEeCCCCCCceeEEEECC----CEEEEEEc
Confidence            3578899999763  4666654          6777776665432  344442222355788888877    66666665


Q ss_pred             CCccE-EEecCC-----------------CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc--ccee-eeeee---
Q 020107           90 ADGGL-LRDITG-----------------EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE--SQLE-VLQQW---  145 (331)
Q Consensus        90 ~dg~i-iw~~~~-----------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~-~~~~~---  145 (331)
                      .++.+ +.++..                 ...++..+-.++|++.++.|+++-+..-..+|.+..  .... .....   
T Consensus        84 r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~  163 (248)
T PF06977_consen   84 RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL  163 (248)
T ss_dssp             TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH
T ss_pred             CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccc
Confidence            67777 444311                 111345678999999999888888877777777764  1110 01111   


Q ss_pred             ---ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC------CcceEEEEEecCCCCEEEEEec
Q 020107          146 ---KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH------KMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       146 ---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                         ......+.+++++|..+++++....+..|..+| .+++....+....+.      -...-.|+|.+ +|++.+++ +
T Consensus       164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvs-E  240 (248)
T PF06977_consen  164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVS-E  240 (248)
T ss_dssp             H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEE-T
T ss_pred             ccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEc-C
Confidence               112345789999998889999999999999999 557666666552211      12467899998 77555544 5


Q ss_pred             CCeEEE
Q 020107          217 DEYLRV  222 (331)
Q Consensus       217 d~~i~i  222 (331)
                      -+...+
T Consensus       241 pNlfy~  246 (248)
T PF06977_consen  241 PNLFYR  246 (248)
T ss_dssp             TTEEEE
T ss_pred             CceEEE
Confidence            554443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.16  E-value=0.0022  Score=54.51  Aligned_cols=238  Identities=16%  Similarity=0.210  Sum_probs=125.7

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc----------------------------------
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK----------------------------------   56 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~----------------------------------   56 (331)
                      .+..|.+++..   --||+|.          ..|.|.||.....+.                                  
T Consensus         3 ~v~~vs~a~~t---~Elav~~----------~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~   69 (395)
T PF08596_consen    3 SVTHVSFAPET---LELAVGL----------ESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAP   69 (395)
T ss_dssp             -EEEEEEETTT---TEEEEEE----------TTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--
T ss_pred             eEEEEEecCCC---ceEEEEc----------cCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCC
Confidence            46778888887   6788887          789999887643210                                  


Q ss_pred             -------ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------------cCccEEEEEEc
Q 020107           57 -------NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------------SSSMCLCLEWN  114 (331)
Q Consensus        57 -------~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------------~~~~v~~~~~~  114 (331)
                             ....+.....++|++++.|.-     -++|.|..+|.+ +-|++....              ....++++.|.
T Consensus        70 ~~~~~gf~P~~l~~~~~g~vtal~~S~i-----GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~  144 (395)
T PF08596_consen   70 PSLKEGFLPLTLLDAKQGPVTALKNSDI-----GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS  144 (395)
T ss_dssp             TT-SEEEEEEEEE---S-SEEEEEE-BT-----SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred             cccccccCchhheeccCCcEeEEecCCC-----cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence                   011122334678999999755     499999999999 777765332              24567788886


Q ss_pred             C-----CC---CeEEEEecCCeEEEEEccc---cce--eeeeeeecccceeEEEe-eCCCC-------------------
Q 020107          115 P-----SA---TSITVGLSDGSVSIVSVVE---SQL--EVLQQWKAHEFELWATS-FDVHQ-------------------  161 (331)
Q Consensus       115 ~-----~~---~~l~~~~~dg~i~i~d~~~---~~~--~~~~~~~~~~~~v~~~~-~~~~~-------------------  161 (331)
                      .     |+   -.+++|...|.+.+|.+.-   +.+  +.......+..+|..+. ++.+.                   
T Consensus       145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~  224 (395)
T PF08596_consen  145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS  224 (395)
T ss_dssp             EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred             EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence            2     22   3689999999999998752   222  11112223445555444 32111                   


Q ss_pred             -CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec----CCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107          162 -PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP----SDSNTLLTGSYDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       162 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  236 (331)
                       +.++++++ +..++++...+.+.......   .......+.+-+    ..+..|++-..+|.|++|.+... +++....
T Consensus       225 i~g~vVvvS-e~~irv~~~~~~k~~~K~~~---~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~  299 (395)
T PF08596_consen  225 IPGYVVVVS-ESDIRVFKPPKSKGAHKSFD---DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVS  299 (395)
T ss_dssp             --EEEEEE--SSEEEEE-TT---EEEEE-S---S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE
T ss_pred             cCcEEEEEc-ccceEEEeCCCCcccceeec---cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhccc
Confidence             12444444 78899999887664332222   222333344421    14667888889999999999886 3343311


Q ss_pred             ee---cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          237 VC---LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       237 ~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      ..   ....+....++++| . ++.-.+...+.++.++..
T Consensus       300 l~~~~d~~~~~~ssis~~G-d-i~~~~gpsE~~l~sv~~~  337 (395)
T PF08596_consen  300 LPPPLDSRRLSSSSISRNG-D-IFYWTGPSEIQLFSVWGE  337 (395)
T ss_dssp             -SS---HHHHTT-EE-TTS---EEEE-SSSEEEEEEEES-
T ss_pred             CCCccccccccccEECCCC-C-EEEEeCcccEEEEEEEcc
Confidence            11   11234556778885 3 444445556667777664

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.14  E-value=1.5e-05  Score=70.83  Aligned_cols=109  Identities=14%  Similarity=0.159  Sum_probs=83.6

Q ss_pred             EEEcCCCCeEEEEec----CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107          111 LEWNPSATSITVGLS----DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL  186 (331)
Q Consensus       111 ~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  186 (331)
                      .+|+|..+++++++.    .|+|.||- ++|++..-.++   .-.+++++|+| ..-.|+.|-.-|.+.+|...+.+...
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~---P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY---PVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc---ceehhhhccCh-HHHHHhhccccceeEEEecCCceeee
Confidence            468888888887764    68888885 34543222222   33467899999 76788888899999999988766443


Q ss_pred             eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107          187 AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       187 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      ....   |..+|.-+.|+| +|..++++..-|.+.+|.+...
T Consensus        96 v~~t---h~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   96 VVET---HPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             eccC---CCCCceeEEecC-CCCeEEEcCCCceeEEEEeeec
Confidence            3333   999999999999 9999999999999999988743

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.13  E-value=0.00022  Score=64.90  Aligned_cols=139  Identities=18%  Similarity=0.216  Sum_probs=91.8

Q ss_pred             ecCCeEEEEEccccceeeeeeeecccce-eEEEeeCC----CCCcEEEEEcCCCeEEEEEccCCCceeee-ec-ccCCCc
Q 020107          124 LSDGSVSIVSVVESQLEVLQQWKAHEFE-LWATSFDV----HQPHMVYTGSDDCKFSGWDIRESPFKLAF-QN-SKIHKM  196 (331)
Q Consensus       124 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~-v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~-~~~~~~  196 (331)
                      .....|+-.|++.|+.  +..++.+... |..++-..    -.+...+.|-.+..|..||.|-....... .. .-....
T Consensus       501 ~~~~~ly~mDLe~GKV--V~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKV--VEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCCCceEEEecCCCcE--EEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            3467899999999976  7788776643 55554321    12345667778899999999965421111 11 001344


Q ss_pred             ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          197 GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       197 ~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                      ...|++-..  ..+||+|+.+|.||+||-- +.+ ..+.+.+.+.+|..|..+.+| ..++++| ...+.+++.
T Consensus       579 ~Fs~~aTt~--~G~iavgs~~G~IRLyd~~-g~~-AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  579 NFSCFATTE--DGYIAVGSNKGDIRLYDRL-GKR-AKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLIDT  646 (794)
T ss_pred             CceEEEecC--CceEEEEeCCCcEEeeccc-chh-hhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEEE
Confidence            567777664  4589999999999999943 333 444456778999999999997 5555555 445555554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.12  E-value=0.0012  Score=58.23  Aligned_cols=246  Identities=11%  Similarity=0.043  Sum_probs=142.7

Q ss_pred             CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEc--CCCCCCCCeEEEEcCCccEEEecC
Q 020107           22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWS--PVGGNAGPFLAQADADGGLLRDIT   99 (331)
Q Consensus        22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~~dg~iiw~~~   99 (331)
                      -+|++|.+-.         ..+..|-..+++..+ .-+.+.-.....+..++|.  |.    ..+++.++..        
T Consensus       139 ydGr~~find---------k~n~Rvari~l~~~~-~~~i~~iPn~~~~Hg~~~~~~p~----t~yv~~~~e~--------  196 (635)
T PRK02888        139 YDGRYLFIND---------KANTRVARIRLDVMK-CDKITELPNVQGIHGLRPQKIPR----TGYVFCNGEF--------  196 (635)
T ss_pred             cceeEEEEec---------CCCcceEEEECccEe-eceeEeCCCccCccccCccccCC----ccEEEeCccc--------
Confidence            3456666654         145666666666554 2222223344567777775  55    6677766653        


Q ss_pred             CCcccCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC----CeE
Q 020107          100 GEKISSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD----CKF  174 (331)
Q Consensus       100 ~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i  174 (331)
                                .+-+.|+|+.+...+. .+.+.+.|.++.+.  ...+.- ......++++| ++.++++.+.+    ..+
T Consensus       197 ----------~~PlpnDGk~l~~~~ey~~~vSvID~etmeV--~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE~G~tl  262 (635)
T PRK02888        197 ----------RIPLPNDGKDLDDPKKYRSLFTAVDAETMEV--AWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSEEGVTL  262 (635)
T ss_pred             ----------ccccCCCCCEeecccceeEEEEEEECccceE--EEEEEe-CCCcccceECC-CCCEEEEeccCcccCcce
Confidence                      3345667776544433 67788888886543  333332 22446778888 66666666421    233


Q ss_pred             EEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC----CCCCceeeeeecCCceEEEEECC
Q 020107          175 SGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS----ISKPVNETSVCLGGGVWRIKHHP  250 (331)
Q Consensus       175 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~  250 (331)
                      ..-+.........+..     ..+.  .+.+ ++++...+  ++.|.+.|.++    ....+..  ..-......+.++|
T Consensus       263 ~em~a~e~d~~vvfni-----~~ie--a~vk-dGK~~~V~--gn~V~VID~~t~~~~~~~v~~y--IPVGKsPHGV~vSP  330 (635)
T PRK02888        263 AEMMAAERDWVVVFNI-----ARIE--EAVK-AGKFKTIG--GSKVPVVDGRKAANAGSALTRY--VPVPKNPHGVNTSP  330 (635)
T ss_pred             eeeccccCceEEEEch-----HHHH--Hhhh-CCCEEEEC--CCEEEEEECCccccCCcceEEE--EECCCCccceEECC
Confidence            3333322221111111     0010  2234 56666553  67899999987    2233333  67788899999999


Q ss_pred             CCCCeEEEEEecCcEEEEEEcCccc----------ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107          251 FIPGLVLAACMHNGFAVVKVGGEKA----------EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR  320 (331)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~  320 (331)
                      |+...+++...++.+.++++.....          ..+.+..- ...-...+|.+++         ....|.- -|.+|.
T Consensus       331 DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G---------~aytslf-~dsqv~  399 (635)
T PRK02888        331 DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRG---------NAYTTLF-LDSQIV  399 (635)
T ss_pred             CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCC---------CEEEeEe-ecceeE
Confidence            9966666666788889999877421          11222221 1223356777776         5677776 899999


Q ss_pred             EEcCCC
Q 020107          321 IWMPES  326 (331)
Q Consensus       321 iW~~~~  326 (331)
                      .|++++
T Consensus       400 kwn~~~  405 (635)
T PRK02888        400 KWNIEA  405 (635)
T ss_pred             EEehHH
Confidence            999876

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.09  E-value=0.0036  Score=51.09  Aligned_cols=263  Identities=12%  Similarity=0.014  Sum_probs=146.3

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC------CccE-----EEecCCCcc------cC
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA------DGGL-----LRDITGEKI------SS  105 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~------dg~i-----iw~~~~~~~------~~  105 (331)
                      .++++++|.++++ .+-.+..+..   -.+..+|+    ++.+++++.      -|..     +||..+...      +.
T Consensus        16 ~~rv~viD~d~~k-~lGmi~~g~~---~~~~~spd----gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~   87 (342)
T PF06433_consen   16 TSRVYVIDADSGK-LLGMIDTGFL---GNVALSPD----GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP   87 (342)
T ss_dssp             SEEEEEEETTTTE-EEEEEEEESS---EEEEE-TT----SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT
T ss_pred             cceEEEEECCCCc-EEEEeecccC---CceeECCC----CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC
Confidence            3579999988765 3444433333   33567899    888877642      2222     899887643      11


Q ss_pred             c-cE------EEEEEcCCCCeEEEEec--CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107          106 S-MC------LCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG  176 (331)
Q Consensus       106 ~-~v------~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (331)
                      . ..      ..++++.+++++++...  --+|.|.|+..++.  +.++.. .+   |...-|..+.-+.+-+.||.+.-
T Consensus        88 k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv--v~ei~~-PG---C~~iyP~~~~~F~~lC~DGsl~~  161 (342)
T PF06433_consen   88 KPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV--VGEIDT-PG---CWLIYPSGNRGFSMLCGDGSLLT  161 (342)
T ss_dssp             S-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE--EEEEEG-TS---EEEEEEEETTEEEEEETTSCEEE
T ss_pred             cchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCce--eeeecC-CC---EEEEEecCCCceEEEecCCceEE
Confidence            1 11      23567778887666543  66788888887765  455442 11   22222334456778888999999


Q ss_pred             EEccC-CCceeee-ecccCCCcce-EEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec----------CCce
Q 020107          177 WDIRE-SPFKLAF-QNSKIHKMGV-CCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL----------GGGV  243 (331)
Q Consensus       177 ~d~~~-~~~~~~~-~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~v  243 (331)
                      ..+.. ++..... ..+..-..++ ..-.+.. .+..++--+.+|.|+-.|+..............          .+.-
T Consensus       162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~  240 (342)
T PF06433_consen  162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW  240 (342)
T ss_dssp             EEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred             EEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence            98884 4332111 1111112222 2223344 455566678899999999886432111101100          1223


Q ss_pred             EEEEECCCCCCeEEEEEe--------cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107          244 WRIKHHPFIPGLVLAACM--------HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY  315 (331)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~  315 (331)
                      .-+++++.. +.+.+.-.        +.+-.+|-+...+.+.+.++.- ...+.++..+.+..        .+|.+.+..
T Consensus       241 Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~--------P~L~~~~~~  310 (342)
T PF06433_consen  241 QLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDK--------PLLYALSAG  310 (342)
T ss_dssp             S-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS---------EEEEEETT
T ss_pred             eeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCC--------cEEEEEcCC
Confidence            346777654 33333221        2245677777766777877763 34677999998875        466544315


Q ss_pred             CCeEEEEcCCCcccC
Q 020107          316 DRLLRIWMPESDCLT  330 (331)
Q Consensus       316 d~~i~iW~~~~~~~~  330 (331)
                      ++.|.+||..++.+.
T Consensus       311 ~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  311 DGTLDVYDAATGKLV  325 (342)
T ss_dssp             TTEEEEEETTT--EE
T ss_pred             CCeEEEEeCcCCcEE
Confidence            899999999998653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.07  E-value=0.0033  Score=49.82  Aligned_cols=211  Identities=15%  Similarity=0.124  Sum_probs=109.4

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEcCC
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPS  116 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~  116 (331)
                      +|.|..||..+++...+.-.........+. ..++    +..+++++.++.+ .++..+++..     ...+.... ...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~----~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPD----GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEE----TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEe----CCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eec
Confidence            678889998776532222211101111111 1222    3456666666666 5555444320     00000001 124


Q ss_pred             CCeEEEEecCCeEEEEEccccceeeeee-eeccc---ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc
Q 020107          117 ATSITVGLSDGSVSIVSVVESQLEVLQQ-WKAHE---FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK  192 (331)
Q Consensus       117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  192 (331)
                      +..+++++.++.++.+|..+++.  +-. .....   .......... .++.++.+..++.|..+|+++++.+.......
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKV--LWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCE--EEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             ccccccccceeeeEecccCCcce--eeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence            56677778888999999988865  333 12111   1111122221 25677888889999999999998766665511


Q ss_pred             CCC-cc------e-EEEEEecCCCCEEEEEecCCe-EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107          193 IHK-MG------V-CCIASIPSDSNTLLTGSYDEY-LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN  263 (331)
Q Consensus       193 ~~~-~~------v-~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  263 (331)
                      ... ..      + ..+.+.  ++ .++.++.++. +.+ |+.+++.. .+  .. ...+..+. .+.+ +.+++.+.++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~-w~--~~-~~~~~~~~-~~~~-~~l~~~~~~~  222 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKL-WS--KP-ISGIYSLP-SVDG-GTLYVTSSDG  222 (238)
T ss_dssp             T-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEE-EE--EC-SS-ECECE-ECCC-TEEEEEETTT
T ss_pred             CCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEE-EE--ec-CCCccCCc-eeeC-CEEEEEeCCC
Confidence            111 11      1 223332  34 6666777775 555 99986422 22  23 33333322 2333 5666666778


Q ss_pred             cEEEEEEcC
Q 020107          264 GFAVVKVGG  272 (331)
Q Consensus       264 ~~~~~~~~~  272 (331)
                      .+..+++..
T Consensus       223 ~l~~~d~~t  231 (238)
T PF13360_consen  223 RLYALDLKT  231 (238)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEECCC
Confidence            877777665

...

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=4.1e-05  Score=65.77  Aligned_cols=96  Identities=10%  Similarity=0.076  Sum_probs=76.7

Q ss_pred             cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceE-EEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC-CIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      ...+.-+.|+| .-.++|.+..+|.|.+..+. .+.+..+..   |...++ +++|.| +|+.||+|-.||+|++.|..+
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~---p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPI---PGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccC---CCCccceeeeecC-CCCEEEEEecCCeEEEEEccC
Confidence            34577899999 88999999999999999888 444555654   566666 999999 999999999999999999998


Q ss_pred             CCCCceeeeeecCCceEEEEECCC
Q 020107          228 ISKPVNETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       228 ~~~~~~~~~~~~~~~v~~~~~~~~  251 (331)
                      +.. +..........|.++.|.+.
T Consensus        94 ~~~-l~~~~~s~e~~is~~~w~~~  116 (665)
T KOG4640|consen   94 GGR-LVSFLFSVETDISKGIWDRI  116 (665)
T ss_pred             CCc-eeccccccccchheeecccc
Confidence            643 33324455678888888753

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.98  E-value=0.007  Score=50.46  Aligned_cols=212  Identities=14%  Similarity=0.105  Sum_probs=113.9

Q ss_pred             CcceeEeeecCCCC----CcEEEEEeecccCCCCCCCCCcEEEEeccCcc---cceEEeE-eeecCcEeEEEEcCCCCCC
Q 020107           10 GNADAVEFCPQDSY----HHVLAASTYTLQEGDKPSRNGSISLFNVNAEE---KNLELLY-RMDTAGIFDIKWSPVGGNA   81 (331)
Q Consensus        10 ~~~~~v~~~~~~~~----~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~~   81 (331)
                      .++.++.......+    ..+|++|+.-...+......|.|.++++....   ..++.+. ....++|++++-.      
T Consensus        24 E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~------   97 (321)
T PF03178_consen   24 EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF------   97 (321)
T ss_dssp             EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE------
T ss_pred             ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh------
Confidence            35666666654432    47999998433333222233999999988841   1122221 1123334444322      


Q ss_pred             CCeEEEEcCCccEEEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc-eeeeeeeecccceeEEEeeCCC
Q 020107           82 GPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ-LEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        82 ~~~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                                                        + ..|+++. .+.|.+|++...+ +.....+.. ...+.++...  
T Consensus        98 ----------------------------------~-~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~-~~~i~sl~~~--  138 (321)
T PF03178_consen   98 ----------------------------------N-GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDS-PFYITSLSVF--  138 (321)
T ss_dssp             ----------------------------------T-TEEEEEE-TTEEEEEEEETTSSEEEEEEE-B-SSSEEEEEEE--
T ss_pred             ----------------------------------C-CEEEEee-cCEEEEEEccCcccchhhheecc-eEEEEEEecc--
Confidence                                              2 2233332 3678888888776 544444433 2356666654  


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC------CC-Cc
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI------SK-PV  232 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~-~~  232 (331)
                       +++++.|.....+.++..+.... ...+.. ......++++.+-+ +++.++.+..+|.+.++.....      .. .+
T Consensus       139 -~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L  215 (321)
T PF03178_consen  139 -KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKL  215 (321)
T ss_dssp             -TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred             -ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccc
Confidence             36888998888888875554221 222222 22456689999986 5579999999999999988631      11 12


Q ss_pred             ee-eeeecCCceEEE---EECC--CCCC-----eEEEEEecCcEEEEE
Q 020107          233 NE-TSVCLGGGVWRI---KHHP--FIPG-----LVLAACMHNGFAVVK  269 (331)
Q Consensus       233 ~~-~~~~~~~~v~~~---~~~~--~~~~-----~~~~~~~~~~~~~~~  269 (331)
                      .. .....+..|+++   .+.|  .+..     .++.++.+|++..+-
T Consensus       216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~  263 (321)
T PF03178_consen  216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI  263 (321)
T ss_dssp             EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred             eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence            22 123445667777   5555  2222     377777888876443

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.92  E-value=0.01  Score=51.36  Aligned_cols=214  Identities=7%  Similarity=0.028  Sum_probs=107.4

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      +..+..+.++|.+   +++++++           +|.-.|+.....    +..   ..+.-....|.+.    + .+|+-
T Consensus        32 ~~~p~~ls~npng---r~v~V~g-----------~geY~iyt~~~~----r~k---~~G~g~~~vw~~~----n-~yAv~   85 (443)
T PF04053_consen   32 EIYPQSLSHNPNG---RFVLVCG-----------DGEYEIYTALAW----RNK---AFGSGLSFVWSSR----N-RYAVL   85 (443)
T ss_dssp             SS--SEEEE-TTS---SEEEEEE-----------TTEEEEEETTTT----EEE---EEEE-SEEEE-TS----S-EEEEE
T ss_pred             CcCCeeEEECCCC---CEEEEEc-----------CCEEEEEEccCC----ccc---ccCceeEEEEecC----c-cEEEE
Confidence            4457788888877   8888876           999999984332    222   1234566789886    4 46777


Q ss_pred             cCCccE-E-EecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           89 DADGGL-L-RDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        89 ~~dg~i-i-w~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      ..+..+ + .+......    .+..+..+-.   |..|...+. +.|.+||..+++.  +..+...  +|..+.|++ ++
T Consensus        86 ~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~--i~~i~v~--~vk~V~Ws~-~g  156 (443)
T PF04053_consen   86 ESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKL--IRRIDVS--AVKYVIWSD-DG  156 (443)
T ss_dssp             -TTS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEET-TEEEEE-TTT--E--EEEESS---E-EEEEE-T-TS
T ss_pred             ECCCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEECC-CCEEEEEhhHcce--eeEEecC--CCcEEEEEC-CC
Confidence            667777 5 45543331    1222333322   777777655 4899999998865  6666532  489999998 77


Q ss_pred             cEEEEEcCCCeEEEEEccCC-----------CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107          163 HMVYTGSDDCKFSGWDIRES-----------PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP  231 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  231 (331)
                      .+++..+.+ .+.+++....           .....+..   -...|.+..|.. +  .++-.... .|+.  +..+...
T Consensus       157 ~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~-d--~fiYtT~~-~lkY--l~~Ge~~  226 (443)
T PF04053_consen  157 ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVE-D--CFIYTTSN-HLKY--LVNGETG  226 (443)
T ss_dssp             SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEET-T--EEEEE-TT-EEEE--EETTEEE
T ss_pred             CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEc-C--EEEEEcCC-eEEE--EEcCCcc
Confidence            888877744 6667665432           01112211   256788888875 3  33333333 6665  4443221


Q ss_pred             ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107          232 VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG  271 (331)
Q Consensus       232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (331)
                      ..   .....+++=+...|.. +.+...-.+..+..+.+.
T Consensus       227 ~i---~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  227 II---AHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EE---EE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--
T ss_pred             eE---EEcCCceEEEEEEccC-CEEEEEECCCCEEEEEEC
Confidence            11   2334556666666643 444454455555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.90  E-value=0.019  Score=52.88  Aligned_cols=156  Identities=8%  Similarity=0.042  Sum_probs=98.1

Q ss_pred             eEEEeeCCCCCcEEEEEc----------CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEE
Q 020107          152 LWATSFDVHQPHMVYTGS----------DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLR  221 (331)
Q Consensus       152 v~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  221 (331)
                      +.++.|..+.+.+++.|.          ..|.|.++.......+..... ..-++.+.++..-  +++++|.-  ...|+
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e-~~v~Gav~aL~~f--ngkllA~I--n~~vr  851 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE-TVVKGAVYALVEF--NGKLLAGI--NQSVR  851 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee-eeeccceeehhhh--CCeEEEec--CcEEE
Confidence            444557753356666665          358888888877333333322 1124555555443  57666654  57899


Q ss_pred             EEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-cCCcceeeeeecCCCCcc
Q 020107          222 VWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-KHGSLAYGADWQRGRSSL  300 (331)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~  300 (331)
                      +|++...+....+  ..+..++..+...-.+ ..++++-.-..+.+......++.....-+ .+....+++.+-.+.   
T Consensus       852 Lye~t~~~eLr~e--~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d---  925 (1096)
T KOG1897|consen  852 LYEWTTERELRIE--CNISNPIIALDLQVKG-DEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD---  925 (1096)
T ss_pred             EEEccccceehhh--hcccCCeEEEEEEecC-cEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc---
Confidence            9999885333333  6777788888777766 56667666677777777766555555444 467788888888775   


Q ss_pred             cccccCcEEEEeecCCCeEEEEcCCC
Q 020107          301 EGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       301 ~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                             .++-+- .+|.+.+-..++
T Consensus       926 -------~ylgae-~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  926 -------TYLGAE-NSGNLFTVRKDS  943 (1096)
T ss_pred             -------eEEeec-ccccEEEEEecC
Confidence                   344444 678887766554

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=9e-05  Score=63.78  Aligned_cols=95  Identities=13%  Similarity=0.061  Sum_probs=76.2

Q ss_pred             CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeE-EEeeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107          105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW-ATSFDVHQPHMVYTGSDDCKFSGWDIRESP  183 (331)
Q Consensus       105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  183 (331)
                      ...+.-+.|+|.-..+|.+..+|.|.+..+.-   +.+-++.-+...++ +++|.| +++.++.|-.||+|++.|+.++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCC
Confidence            45577889999999999999999999988873   33566665666666 999999 79999999999999999999987


Q ss_pred             ceeeeecccCCCcceEEEEEec
Q 020107          184 FKLAFQNSKIHKMGVCCIASIP  205 (331)
Q Consensus       184 ~~~~~~~~~~~~~~v~~~~~~~  205 (331)
                      .+..+..  .-...|.++.|.|
T Consensus        96 ~l~~~~~--s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLF--SVETDISKGIWDR  115 (665)
T ss_pred             ceecccc--ccccchheeeccc
Confidence            6665322  1367788888875

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.88  E-value=0.011  Score=49.31  Aligned_cols=181  Identities=10%  Similarity=0.066  Sum_probs=108.3

Q ss_pred             CeEEEEEccccceeeeeeeecccceeEEE---eeCCC---CCcEEEEEcC----------CCeEEEEEccCC----Ccee
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEFELWAT---SFDVH---QPHMVYTGSD----------DCKFSGWDIRES----PFKL  186 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~---~~~~~---~~~~l~~~~~----------dg~i~i~d~~~~----~~~~  186 (331)
                      ..|++.|..+.+......+... ..++++   .+...   ...+++.|+.          .|.|.++++...    ....
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            3678888876654333444433 334443   33321   1467777652          289999999984    1222


Q ss_pred             eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107          187 AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFA  266 (331)
Q Consensus       187 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  266 (331)
                      .+.. ....++|++++--  ++. |+.+. ++.|.+|++...+.....-.......+.++....   .+++++....++.
T Consensus        81 ~i~~-~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~---~~I~vgD~~~sv~  152 (321)
T PF03178_consen   81 LIHS-TEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK---NYILVGDAMKSVS  152 (321)
T ss_dssp             EEEE-EEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET---TEEEEEESSSSEE
T ss_pred             EEEE-EeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccc---cEEEEEEcccCEE
Confidence            2222 2257889998876  344 44443 5889999999854233332233444677777664   5788888889988


Q ss_pred             EEEEcCcccceeEEee-cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          267 VVKVGGEKAEVLETYA-KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       267 ~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ++.+.....+....-+ .....++++.+-+++         ..++.+. .+|.|.++..+.
T Consensus       153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~---------~~~i~~D-~~gnl~~l~~~~  203 (321)
T PF03178_consen  153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDE---------DTIIVGD-KDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEETTTE-EEEEEEESS-BEEEEEEEE-SS---------SEEEEEE-TTSEEEEEEE-S
T ss_pred             EEEEEccCCEEEEEEecCCCccEEEEEEecCC---------cEEEEEc-CCCeEEEEEECC
Confidence            8877764222322222 235578899998776         4788888 899999998764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.85  E-value=0.0085  Score=47.35  Aligned_cols=199  Identities=11%  Similarity=0.073  Sum_probs=105.7

Q ss_pred             ccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc
Q 020107          106 SMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF  184 (331)
Q Consensus       106 ~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  184 (331)
                      ..+..++|+|+.+ ++++....+.|..++.+ ++......+.+ ......+++.. ++.++++--+++.+.++++.....
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----T
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccc
Confidence            4588999999766 45666668888888865 55422222333 34577888874 666777666789999999843221


Q ss_pred             ---e---eeee--cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC--CCCCcee-ee------eecCCceEEEE
Q 020107          185 ---K---LAFQ--NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS--ISKPVNE-TS------VCLGGGVWRIK  247 (331)
Q Consensus       185 ---~---~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~-~~------~~~~~~v~~~~  247 (331)
                         .   ..+.  ....+...+-.++|+| ..+.|+.+-+..-..+|.++.  ....+.. ..      ......+..++
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~  177 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS  177 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence               1   1222  1123566799999999 666666677777777887765  1111111 00      11234578899


Q ss_pred             ECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCC---------cceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107          248 HHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHG---------SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL  318 (331)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~  318 (331)
                      ++|....+++.+.....  ++.+... ++.+..+.-..         ..--+++|.++|          .|...+ +-+.
T Consensus       178 ~~p~t~~lliLS~es~~--l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G----------~LYIvs-EpNl  243 (248)
T PF06977_consen  178 YDPRTGHLLILSDESRL--LLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG----------NLYIVS-EPNL  243 (248)
T ss_dssp             EETTTTEEEEEETTTTE--EEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT------------EEEEE-TTTE
T ss_pred             EcCCCCeEEEEECCCCe--EEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCC----------CEEEEc-CCce
Confidence            99987455555444444  4444433 66555544111         246689999987          344445 6666


Q ss_pred             EEEE
Q 020107          319 LRIW  322 (331)
Q Consensus       319 i~iW  322 (331)
                      .+++
T Consensus       244 fy~f  247 (248)
T PF06977_consen  244 FYRF  247 (248)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.84  E-value=0.0047  Score=53.09  Aligned_cols=214  Identities=14%  Similarity=0.112  Sum_probs=114.8

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEc---CC-ccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEe-cCCe--EEEE
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQAD---AD-GGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGL-SDGS--VSIV  132 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~---~d-g~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~--i~i~  132 (331)
                      ...+..-+|+|+    +..++-..   .. ..+ ++++.+++..     ...-..-+|+|||+.|+... .||.  |.++
T Consensus       192 ~~~~~~p~ws~~----~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         192 GSLILTPAWSPD----GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             CcceeccccCcC----CCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence            345777789998    55544332   11 224 7777776542     23334567999999866554 4665  5555


Q ss_pred             EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCe--EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107          133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCK--FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                      |+..+..   ..+....+.-+.=.|+|++..++++.+..|.  |.++|...... ..+..   ....-..-.|+| ++++
T Consensus       268 dl~~~~~---~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~---~~~~~~~p~~Sp-dG~~  339 (425)
T COG0823         268 DLDGKNL---PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF---SGGGNSNPVWSP-DGDK  339 (425)
T ss_pred             cCCCCcc---eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec---cCCCCcCccCCC-CCCE
Confidence            6665542   2233333333466899954455555556665  55556665543 33333   222222778899 8888


Q ss_pred             EEEEecC-Ce--EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcc
Q 020107          211 LLTGSYD-EY--LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL  287 (331)
Q Consensus       211 l~~~~~d-~~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  287 (331)
                      ++..+.. |.  |.+.|+.+... ..  ..........-.|.|++..++..++..++-.++.+... ++....+....+.
T Consensus       340 i~~~~~~~g~~~i~~~~~~~~~~-~~--~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~-g~~~~~~~~~~~~  415 (425)
T COG0823         340 IVFESSSGGQWDIDKNDLASGGK-IR--ILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLD-GRVSRPLPLADGD  415 (425)
T ss_pred             EEEEeccCCceeeEEeccCCCCc-EE--EccccccCCCCCcCCCCceEEEeccCCCCceEEEeecc-ceeEEEEeccCcc
Confidence            8877743 44  66666655432 22  23444445566778887444444444433334444333 3333333333334


Q ss_pred             eeeeeecC
Q 020107          288 AYGADWQR  295 (331)
Q Consensus       288 v~~~~~~~  295 (331)
                      +..-+|+|
T Consensus       416 ~~~p~w~~  423 (425)
T COG0823         416 VRVPAWSP  423 (425)
T ss_pred             eecccccC
Confidence            44444443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.84  E-value=0.013  Score=49.43  Aligned_cols=199  Identities=9%  Similarity=0.032  Sum_probs=92.8

Q ss_pred             CCCeEEEEe-cCCeEEEEEcccc--ceeeeeeeec---cc----ceeEEEeeCCCCCcEEEEEc------CCCeEEEEEc
Q 020107          116 SATSITVGL-SDGSVSIVSVVES--QLEVLQQWKA---HE----FELWATSFDVHQPHMVYTGS------DDCKFSGWDI  179 (331)
Q Consensus       116 ~~~~l~~~~-~dg~i~i~d~~~~--~~~~~~~~~~---~~----~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~  179 (331)
                      +.++|++.+ ..+.|.|+|+.+.  +....+.+..   +.    .....+..-| ++.+++++-      .-|.+.+.|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcC
Confidence            445666665 6889999999852  2222333332   11    1222333334 666777642      2357888888


Q ss_pred             cCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe--------------------cCCeEEEEEecCCCCCceeeeeec
Q 020107          180 RESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS--------------------YDEYLRVWDVRSISKPVNETSVCL  239 (331)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------------------~d~~i~iwd~~~~~~~~~~~~~~~  239 (331)
                      .+.+....+.........-+.+-|.| ..+.++|..                    ...++.+||+.+. ++++.+..+.
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-~~~Q~idLg~  242 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR-KLLQTIDLGE  242 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT-EEEEEEES-T
T ss_pred             ccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC-cEeeEEecCC
Confidence            87766666655222344567788888 778888753                    2468999999984 5565533333


Q ss_pred             CC-ceEEEEECCC--CCCeEEEEEecCcEEEEEEcCcc-----cceeEEeecC-----------------Ccceeeeeec
Q 020107          240 GG-GVWRIKHHPF--IPGLVLAACMHNGFAVVKVGGEK-----AEVLETYAKH-----------------GSLAYGADWQ  294 (331)
Q Consensus       240 ~~-~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~h-----------------~~~v~~~~~~  294 (331)
                      .+ .+..|+|..+  ...-++.+.-...  +|.+....     .+.+..+..-                 ..-|+++..|
T Consensus       243 ~g~~pLEvRflH~P~~~~gFvg~aLss~--i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  243 EGQMPLEVRFLHDPDANYGFVGCALSSS--IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             TEEEEEEEEE-SSTT--EEEEEEE--EE--EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred             CCCceEEEEecCCCCccceEEEEeccce--EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence            33 4667777654  3223333333333  55554421     2233333211                 2458999999


Q ss_pred             CCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          295 RGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       295 ~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      .|+         ++|....+.+|.|+.||+.+-.
T Consensus       321 lDD---------rfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  321 LDD---------RFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             TTS----------EEEEEETTTTEEEEEE-SSTT
T ss_pred             cCC---------CEEEEEcccCCcEEEEecCCCC
Confidence            998         7887777799999999998743

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>smart00320 WD40 WD40 repeats

Probab=97.80  E-value=8.8e-05  Score=39.37  Aligned_cols=38  Identities=21%  Similarity=0.375  Sum_probs=33.2

Q ss_pred             ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107          276 EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       276 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~  323 (331)
                      +....+..|...|.++.|.+..         .++++++ .|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~-~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDG---------KYLASAS-DDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCC---------CEEEEec-CCCeEEEcC
Confidence            4566777889999999999987         6899999 999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.79  E-value=0.0098  Score=46.18  Aligned_cols=143  Identities=11%  Similarity=0.068  Sum_probs=83.5

Q ss_pred             eecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-E
Q 020107           17 FCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-L   95 (331)
Q Consensus        17 ~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-i   95 (331)
                      .+++..  .++..|+          -.+.+.--|..+++...+.+..   ..|.+-+.- -    +++++.|...|.+ +
T Consensus        18 V~~dsk--T~v~igS----------Hs~~~~avd~~sG~~~We~ilg---~RiE~sa~v-v----gdfVV~GCy~g~lYf   77 (354)
T KOG4649|consen   18 VCNDSK--TLVVIGS----------HSGIVIAVDPQSGNLIWEAILG---VRIECSAIV-V----GDFVVLGCYSGGLYF   77 (354)
T ss_pred             EecCCc--eEEEEec----------CCceEEEecCCCCcEEeehhhC---ceeeeeeEE-E----CCEEEEEEccCcEEE
Confidence            344443  7888898          5888888888887633333322   223222222 2    5689999999988 4


Q ss_pred             EecCCCccc-----CccE-EEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc
Q 020107           96 RDITGEKIS-----SSMC-LCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS  169 (331)
Q Consensus        96 w~~~~~~~~-----~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  169 (331)
                      -+..++..-     ...| ......+++..+..|+.|+..+..|.++...  +...+.......+-+..| ....|..+.
T Consensus        78 l~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c--VykskcgG~~f~sP~i~~-g~~sly~a~  154 (354)
T KOG4649|consen   78 LCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC--VYKSKCGGGTFVSPVIAP-GDGSLYAAI  154 (354)
T ss_pred             EEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce--EEecccCCceeccceecC-CCceEEEEe
Confidence            444443210     0111 1223467899999999999999999987643  555554343334445555 334444445


Q ss_pred             CCCeEEEEEccCC
Q 020107          170 DDCKFSGWDIRES  182 (331)
Q Consensus       170 ~dg~i~i~d~~~~  182 (331)
                      ..|.+.--.....
T Consensus       155 t~G~vlavt~~~~  167 (354)
T KOG4649|consen  155 TAGAVLAVTKNPY  167 (354)
T ss_pred             ccceEEEEccCCC
Confidence            5565554444433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.74  E-value=0.0032  Score=42.23  Aligned_cols=95  Identities=18%  Similarity=0.189  Sum_probs=65.4

Q ss_pred             ceeEeeecCCCCC-cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           12 ADAVEFCPQDSYH-HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        12 ~~~v~~~~~~~~~-~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      +.++.++.+..++ +.|++|+          .|..|++|+-+..   +..+  .....|+.+.-...     ..++.+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs----------~D~~IRvf~~~e~---~~Ei--~e~~~v~~L~~~~~-----~~F~Y~l~   61 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGS----------DDFEIRVFKGDEI---VAEI--TETDKVTSLCSLGG-----GRFAYALA   61 (111)
T ss_pred             eeEEEEEecCCCCcceEEEec----------CCcEEEEEeCCcE---EEEE--ecccceEEEEEcCC-----CEEEEEec
Confidence            5678888876554 5788888          8999999986653   3333  23466888776665     37999999


Q ss_pred             CccE--------EEecCCCcccCccEEEEEEcC---CC-CeEEEEecCCeEE
Q 020107           91 DGGL--------LRDITGEKISSSMCLCLEWNP---SA-TSITVGLSDGSVS  130 (331)
Q Consensus        91 dg~i--------iw~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~  130 (331)
                      +|++        +|.+.+..    .+.++.+..   +| +.|++|-.+|.|-
T Consensus        62 NGTVGvY~~~~RlWRiKSK~----~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   62 NGTVGVYDRSQRLWRIKSKN----QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CCEEEEEeCcceeeeeccCC----CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9999        77776543    345554432   33 2588888888764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.69  E-value=0.004  Score=41.80  Aligned_cols=100  Identities=10%  Similarity=0.010  Sum_probs=65.9

Q ss_pred             eEEEeeCC---CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107          152 LWATSFDV---HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       152 v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      |+++++..   +..+.|++|+.|..||+|+-.  ..+..+..    ...|+++.-..  +..|+.+-.+|+|-+|+-.. 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e----~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~-   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE----TDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ-   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec----ccceEEEEEcC--CCEEEEEecCCEEEEEeCcc-
Confidence            44555443   244789999999999999865  34566664    67788888775  47799999999999997643 


Q ss_pred             CCCceeeeeecCCceEEEEECC---CCCCeEEEEEecCc
Q 020107          229 SKPVNETSVCLGGGVWRIKHHP---FIPGLVLAACMHNG  264 (331)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~  264 (331)
                       +...   ......+.++.+..   ++...++++-+++.
T Consensus        73 -RlWR---iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGk  107 (111)
T PF14783_consen   73 -RLWR---IKSKNQVTSMAFYDINGDGVPELIVGWSNGK  107 (111)
T ss_pred             -eeee---eccCCCeEEEEEEcCCCCCceEEEEEecCCe
Confidence             3332   23334466665543   33235666655554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.67  E-value=0.027  Score=47.67  Aligned_cols=231  Identities=13%  Similarity=0.125  Sum_probs=123.6

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----------------
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----------------  104 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----------------  104 (331)
                      .+.+.+||+.++.  ...+... ...+....|||+    ++.++-.... .+ +++..+....                 
T Consensus        22 ~~~y~i~d~~~~~--~~~l~~~-~~~~~~~~~sP~----g~~~~~v~~~-nly~~~~~~~~~~~lT~dg~~~i~nG~~dw   93 (353)
T PF00930_consen   22 KGDYYIYDIETGE--ITPLTPP-PPKLQDAKWSPD----GKYIAFVRDN-NLYLRDLATGQETQLTTDGEPGIYNGVPDW   93 (353)
T ss_dssp             EEEEEEEETTTTE--EEESS-E-ETTBSEEEE-SS----STEEEEEETT-EEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred             ceeEEEEecCCCc--eEECcCC-ccccccceeecC----CCeeEEEecC-ceEEEECCCCCeEEeccccceeEEcCccce
Confidence            5689999999875  4444332 567899999999    8888877654 45 6655433210                 


Q ss_pred             ------CccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeeccc---ceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107          105 ------SSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHE---FELWATSFDVHQPHMVYTGSDDCKF  174 (331)
Q Consensus       105 ------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i  174 (331)
                            -..-..+-|+||+++|+.... +..|..+.+..        +....   ..+..+.+- .-+.--.    .-.+
T Consensus        94 vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~--------~~~~~~~yp~~~~~~YP-k~G~~np----~v~l  160 (353)
T PF00930_consen   94 VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD--------YSPPDSQYPEVESIRYP-KAGDPNP----RVSL  160 (353)
T ss_dssp             HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE--------ESSSTESS-EEEEEE---BTTS-------EEEE
T ss_pred             eccccccccccceEECCCCCEEEEEEECCcCCceEEeec--------cCCccccCCcccccccC-CCCCcCC----ceEE
Confidence                  112256889999998877644 44444444322        11111   133444432 1111111    1246


Q ss_pred             EEEEccCCCceeeeecc---cCCCcceEEEEEecCCCCEEEEEe--cCC---eEEEEEecCCCCCceeeeeecCCce---
Q 020107          175 SGWDIRESPFKLAFQNS---KIHKMGVCCIASIPSDSNTLLTGS--YDE---YLRVWDVRSISKPVNETSVCLGGGV---  243 (331)
Q Consensus       175 ~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~--~d~---~i~iwd~~~~~~~~~~~~~~~~~~v---  243 (331)
                      .|+|+.+++.. .+...   ......+..+.|.+ ++..|+..-  .+.   .+.++|..++...... .....+.|   
T Consensus       161 ~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~-~e~~~~Wv~~~  237 (353)
T PF00930_consen  161 FVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL-EETSDGWVDVY  237 (353)
T ss_dssp             EEEESSSTCCC-EE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE-EEESSSSSSSS
T ss_pred             EEEECCCCcEE-EeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEE-EecCCcceeee
Confidence            77899877643 22211   12466789999999 777344332  222   4667788764332222 23333333   


Q ss_pred             EEEEEC-CCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceee-eeecCCCC
Q 020107          244 WRIKHH-PFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG-ADWQRGRS  298 (331)
Q Consensus       244 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~  298 (331)
                      ....|. +++..++..+-.++--+++.+... +.....+....-.|.. +.|.+++.
T Consensus       238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~-~~~~~~lT~G~~~V~~i~~~d~~~~  293 (353)
T PF00930_consen  238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLD-GGKPRQLTSGDWEVTSILGWDEDNN  293 (353)
T ss_dssp             SEEEE-TTTSSEEEEEEETTSSEEEEEEETT-SSEEEESS-SSS-EEEEEEEECTSS
T ss_pred             cccccccCCCCEEEEEEEcCCCcEEEEEccc-ccceeccccCceeecccceEcCCCC
Confidence            245554 777566666666666677777665 3334455544555644 66777763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.66  E-value=0.0061  Score=53.96  Aligned_cols=165  Identities=9%  Similarity=0.031  Sum_probs=102.1

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE---EEecCCCcccCccEEEEEE------
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL---LRDITGEKISSSMCLCLEW------  113 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i---iw~~~~~~~~~~~v~~~~~------  113 (331)
                      .+.+.+.|.++.+ ....+.-  .+....++++|+    ++++++.+.+...   +-.+......    ..+.|      
T Consensus       214 ~~~vSvID~etme-V~~qV~V--dgnpd~v~~spd----Gk~afvTsyNsE~G~tl~em~a~e~d----~~vvfni~~ie  282 (635)
T PRK02888        214 RSLFTAVDAETME-VAWQVMV--DGNLDNVDTDYD----GKYAFSTCYNSEEGVTLAEMMAAERD----WVVVFNIARIE  282 (635)
T ss_pred             eEEEEEEECccce-EEEEEEe--CCCcccceECCC----CCEEEEeccCcccCcceeeeccccCc----eEEEEchHHHH
Confidence            5566666666543 2222211  224466788888    8888887644333   3333332211    22333      


Q ss_pred             --cCCCCeEEEEecCCeEEEEEccc----cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc---
Q 020107          114 --NPSATSITVGLSDGSVSIVSVVE----SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF---  184 (331)
Q Consensus       114 --~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---  184 (331)
                        .++|++...  .++.|.+.|..+    +. ..+..+. -......+.++|+....++++..+.++.|.|+.+.+.   
T Consensus       283 a~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~  358 (635)
T PRK02888        283 EAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD  358 (635)
T ss_pred             HhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence              346777665  357899999887    22 2244443 3456789999994444455555789999999987542   


Q ss_pred             ---------eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          185 ---------KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       185 ---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                               .....    -.......+|.+ +++...+..-|..|..||+..
T Consensus       359 ~~~~~~~~vvaeve----vGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        359 GKIKPRDAVVAEPE----LGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccCCccceEEEeec----cCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence                     11222    133456778888 888888888999999999875

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.62  E-value=0.005  Score=52.93  Aligned_cols=164  Identities=10%  Similarity=-0.049  Sum_probs=97.0

Q ss_pred             eecccceeEEEeeCCCCCcEEEEE---cCC-CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE-EEecCCe
Q 020107          145 WKAHEFELWATSFDVHQPHMVYTG---SDD-CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL-TGSYDEY  219 (331)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~~l~~~---~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~  219 (331)
                      +......+..-+|+| ++..++..   ... ..+.++|+.+++.......    ...-..-+|+| +++.|+ +...||.
T Consensus       188 l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~----~g~~~~P~fsp-DG~~l~f~~~rdg~  261 (425)
T COG0823         188 LTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF----NGNNGAPAFSP-DGSKLAFSSSRDGS  261 (425)
T ss_pred             ecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeecc----CCccCCccCCC-CCCEEEEEECCCCC
Confidence            333445677778888 44443322   222 4699999999886665553    34445578999 666554 4556675


Q ss_pred             --EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107          220 --LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       220 --i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                        |.+.|+....  ... +....+.-..=.|+|+|+.++.++...+.-.+|.+..+ +.....+......-..-.|+|++
T Consensus       262 ~~iy~~dl~~~~--~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~-g~~~~riT~~~~~~~~p~~SpdG  337 (425)
T COG0823         262 PDIYLMDLDGKN--LPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE-GSQVTRLTFSGGGNSNPVWSPDG  337 (425)
T ss_pred             ccEEEEcCCCCc--cee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC-CCceeEeeccCCCCcCccCCCCC
Confidence              5555666532  222 22333333466899999777777766666677777665 33334444333333367899999


Q ss_pred             CcccccccCcEEEEeecCCCe--EEEEcCCCc
Q 020107          298 SSLEGKRKNSLVATCSFYDRL--LRIWMPESD  327 (331)
Q Consensus       298 ~~~~~~~~~~~l~s~~~~d~~--i~iW~~~~~  327 (331)
                               ++|+..+..+|.  |.+.++.++
T Consensus       338 ---------~~i~~~~~~~g~~~i~~~~~~~~  360 (425)
T COG0823         338 ---------DKIVFESSSGGQWDIDKNDLASG  360 (425)
T ss_pred             ---------CEEEEEeccCCceeeEEeccCCC
Confidence                     566666523455  666665444

>smart00320 WD40 WD40 repeats

Probab=97.62  E-value=0.00018  Score=38.09  Aligned_cols=30  Identities=33%  Similarity=0.544  Sum_probs=28.0

Q ss_pred             CCcceEEEEEecCCCCEEEEEecCCeEEEEE
Q 020107          194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWD  224 (331)
Q Consensus       194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd  224 (331)
                      |...|.++.|.+ .+.++++++.|+.+++||
T Consensus        11 ~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            888999999999 778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.60  E-value=0.038  Score=47.67  Aligned_cols=186  Identities=14%  Similarity=0.088  Sum_probs=100.1

Q ss_pred             cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-------ccCccEE-----EE
Q 020107           45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-------ISSSMCL-----CL  111 (331)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-------~~~~~v~-----~~  111 (331)
                      .|+||+.....  +..+ ....+.|.++.|+.+    . .|++-..||.+ ++++....       .....|.     ..
T Consensus        62 ~I~iys~sG~l--l~~i-~w~~~~iv~~~wt~~----e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~  133 (410)
T PF04841_consen   62 SIQIYSSSGKL--LSSI-PWDSGRIVGMGWTDD----E-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAI  133 (410)
T ss_pred             EEEEECCCCCE--eEEE-EECCCCEEEEEECCC----C-eEEEEEcCCEEEEEeCCCceeechhhhccccCccccccccc
Confidence            59999888764  4444 223378999999887    3 56666789998 88775433       1112222     22


Q ss_pred             EEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE----------EeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107          112 EWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA----------TSFDVHQPHMVYTGSDDCKFSGWDIRE  181 (331)
Q Consensus       112 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~----------~~~~~~~~~~l~~~~~dg~i~i~d~~~  181 (331)
                      .+..+|  +++-..++.+.+..-..... ..+.+..-......          ..++. +....+....++.+.+.+-..
T Consensus       134 ~~~~~G--ivvLt~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~  209 (410)
T PF04841_consen  134 WFYKNG--IVVLTGNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENS  209 (410)
T ss_pred             ccCCCC--EEEECCCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEccc
Confidence            222233  44444455554443222110 01111000000000          11222 223333334445555343322


Q ss_pred             CCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107          182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  251 (331)
                      .+.   +.    ..+++..|+.|| +++++|.-..+|.+.+.+..- .+.+.+....-......+.|+.+
T Consensus       210 ~~~---i~----~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  210 FKQ---ID----SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDF-SEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             ccc---cc----CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcc-cceeEEeecCcCCCCcEEEEECC
Confidence            111   11    246899999999 999999999999999987654 34555533344467788999876

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.51  E-value=0.036  Score=45.07  Aligned_cols=216  Identities=14%  Similarity=0.043  Sum_probs=119.7

Q ss_pred             CCeEEEEcCCccEEEecCCC-c----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeee------------
Q 020107           82 GPFLAQADADGGLLRDITGE-K----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQ------------  144 (331)
Q Consensus        82 ~~~l~~~~~dg~iiw~~~~~-~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------  144 (331)
                      ++.|+.|..+|..++++... .    .+...|..+...++-+.+++-+ |+.+.++++..-.......            
T Consensus         7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~   85 (275)
T PF00780_consen    7 GDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPT   85 (275)
T ss_pred             CCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccc
Confidence            67899999999557776221 1    1344588898888777766654 4999999988632211100            


Q ss_pred             eecccceeEEEe-eCCCCCcEEEEEcCCCeEEEEEccCC-----CceeeeecccCCCcceEEEEEecCCCCEEEEEecCC
Q 020107          145 WKAHEFELWATS-FDVHQPHMVYTGSDDCKFSGWDIRES-----PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE  218 (331)
Q Consensus       145 ~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  218 (331)
                      .......+...+ -....+...+.......|.+|.....     +....+..    ...+.+++|.+   +.++.|..++
T Consensus        86 ~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l----p~~~~~i~~~~---~~i~v~~~~~  158 (275)
T PF00780_consen   86 KLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL----PDPPSSIAFLG---NKICVGTSKG  158 (275)
T ss_pred             cccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc----CCCcEEEEEeC---CEEEEEeCCc
Confidence            011223344444 11223333444444568999888763     23344443    57889999974   6777776544


Q ss_pred             eEEEEEecCCCCCceeeee-e-----------cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE--EeecC
Q 020107          219 YLRVWDVRSISKPVNETSV-C-----------LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE--TYAKH  284 (331)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~-~-----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h  284 (331)
                       ..+.|+.++ .+... .. .           ...++..+....+  .++++.  ++.-..++...   +..+  .+. -
T Consensus       159 -f~~idl~~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~Ll~~--~~~g~fv~~~G---~~~r~~~i~-W  227 (275)
T PF00780_consen  159 -FYLIDLNTG-SPSEL-LDPSDSSSSFKSRNSSSKPLGIFQLSDN--EFLLCY--DNIGVFVNKNG---EPSRKSTIQ-W  227 (275)
T ss_pred             -eEEEecCCC-CceEE-eCccCCcchhhhcccCCCceEEEEeCCc--eEEEEe--cceEEEEcCCC---CcCcccEEE-c
Confidence             778898864 22111 11 1           1123334444433  455442  33322333332   2222  222 2


Q ss_pred             CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      .....++++...           +|+..+  ++.|.||++.++.+
T Consensus       228 ~~~p~~~~~~~p-----------yli~~~--~~~iEV~~~~~~~l  259 (275)
T PF00780_consen  228 SSAPQSVAYSSP-----------YLIAFS--SNSIEVRSLETGEL  259 (275)
T ss_pred             CCchhEEEEECC-----------EEEEEC--CCEEEEEECcCCcE
Confidence            335556666442           677776  56699999999864

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.50  E-value=0.038  Score=47.70  Aligned_cols=49  Identities=14%  Similarity=0.082  Sum_probs=34.7

Q ss_pred             eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107          128 SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE  181 (331)
Q Consensus       128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  181 (331)
                      .|.+|+.... .  +..+.-..+.+.++.|+. + ..|+....||.+++||+..
T Consensus        62 ~I~iys~sG~-l--l~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSSSGK-L--LSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECCCCC-E--eEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCC
Confidence            5888987643 2  333333337899999985 4 4566667899999999973

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.0093  Score=55.26  Aligned_cols=208  Identities=13%  Similarity=0.125  Sum_probs=112.1

Q ss_pred             CCeEEEEcCCccE-----EEecC---CCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeE
Q 020107           82 GPFLAQADADGGL-----LRDIT---GEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW  153 (331)
Q Consensus        82 ~~~l~~~~~dg~i-----iw~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~  153 (331)
                      +..++.|+..|.+     .|++.   .++....+|.+++|+.+|..++.|-.+|.|.+||...++.  ++.+..|..+.+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~--l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI--LKVITEHGAPVT  176 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc--eeeeeecCCccc
Confidence            4478899999988     44443   2333578999999999999999999999999999998754  555555554444


Q ss_pred             EE---eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee------cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEE
Q 020107          154 AT---SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ------NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD  224 (331)
Q Consensus       154 ~~---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd  224 (331)
                      .+   .+.. ++..++++...|.  +|.+.-.+....+.      ...+..+.|.++.--| +. .+..-+.+. ..+.-
T Consensus       177 ~vi~v~~t~-~nS~llt~D~~Gs--f~~lv~nk~~L~~~~~kskcl~sg~~g~Vis~s~i~-~e-~l~~~~v~h-f~~v~  250 (1206)
T KOG2079|consen  177 GVIFVGRTS-QNSKLLTSDTGGS--FWKLVFNKALLNMNTDKSKCLLSGKNGEVISASPIS-DE-NLGSLLVSH-FGFVS  250 (1206)
T ss_pred             eEEEEEEeC-CCcEEEEccCCCc--eEEEEechhhhcccchHHHHhhcCCCCceEecccCC-cc-hhhhhheee-eeEEE
Confidence            43   3333 4456888877776  55543222100000      0011345565554444 21 111111111 00111


Q ss_pred             ecCCC-----CCceeeeeecCCceEEEE-----ECC----CCCCeEEEEEecCcEEEEEEcCcccceeEEee---cCCcc
Q 020107          225 VRSIS-----KPVNETSVCLGGGVWRIK-----HHP----FIPGLVLAACMHNGFAVVKVGGEKAEVLETYA---KHGSL  287 (331)
Q Consensus       225 ~~~~~-----~~~~~~~~~~~~~v~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~  287 (331)
                      +....     .|+.......++.+..++     ++.    -.....++++..+++.+..+...++.......   .-.+.
T Consensus       251 L~p~~sIvt~fPi~f~~q~pPa~v~~~~~~s~~ins~~ts~e~~~~ia~s~nNkL~v~sI~~sn~~~ql~~~~~~efa~S  330 (1206)
T KOG2079|consen  251 LVPLSSIVTLFPIKFMYQKPPAGVVGSGSHSKLINSDSTSVEEDVVIAASYNNKLVVKSIPNSNFYAQLQPRREGEFAGS  330 (1206)
T ss_pred             eecccceeeecceEEEEecCCCceeccccceeeeeccccccccceEEEEEeCCeEEEEEEecccceEEEeeccccccccc
Confidence            11100     111111111122221111     111    11256788888899999988776433322222   23567


Q ss_pred             eeeeeecCCC
Q 020107          288 AYGADWQRGR  297 (331)
Q Consensus       288 v~~~~~~~~~  297 (331)
                      +..+.|-+..
T Consensus       331 ilsi~W~~s~  340 (1206)
T KOG2079|consen  331 ILSIHWRRST  340 (1206)
T ss_pred             hhheeeeccc
Confidence            8889998874

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.38  E-value=0.054  Score=44.24  Aligned_cols=268  Identities=13%  Similarity=0.091  Sum_probs=124.5

Q ss_pred             eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-e---cCcEeEEEEcCCCCC
Q 020107            5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-D---TAGIFDIKWSPVGGN   80 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~   80 (331)
                      ++..+.+...|.|....   .-+|+|.           .+.|  +....+.+........ .   .....+|.|...   
T Consensus        12 ~l~t~~~l~dV~F~d~~---~G~~VG~-----------~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~---   72 (302)
T PF14870_consen   12 SLPTDKPLLDVAFVDPN---HGWAVGA-----------YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN---   72 (302)
T ss_dssp             E-S-SS-EEEEEESSSS----EEEEET-----------TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT---
T ss_pred             ecCCCCceEEEEEecCC---EEEEEec-----------CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC---
Confidence            34456678889998443   6788886           5543  3433332222222111 1   123667777644   


Q ss_pred             CCCeEEEEcCCccEEEecCCCc---------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc--cceeeeeeeeccc
Q 020107           81 AGPFLAQADADGGLLRDITGEK---------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE--SQLEVLQQWKAHE  149 (331)
Q Consensus        81 ~~~~l~~~~~dg~iiw~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~  149 (331)
                        ..++ ++..|.++.....++         .-+.....+....++..++ ++..|.|  |....  ..++.  ......
T Consensus        73 --~g~i-vG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW~~--~~~~~~  144 (302)
T PF14870_consen   73 --EGWI-VGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTWQA--VVSETS  144 (302)
T ss_dssp             --EEEE-EEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSEEE--EE-S--
T ss_pred             --ceEE-EcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCeeE--cccCCc
Confidence              2344 445566533222211         1122233333333333333 3444554  33333  23322  223344


Q ss_pred             ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC--
Q 020107          150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS--  227 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--  227 (331)
                      ..+..+.-++ ++.+++++.......-||.-...-.+.-..   ....|.+|.|.| ++.+.+++ ..|.|++=+...  
T Consensus       145 gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~---~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  145 GSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRN---SSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             --EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             ceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccC---ccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence            6688888886 888888887666667788654322222222   467899999999 77665544 888888876221  


Q ss_pred             --CCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee---cCCcceeeeeecCCCCcccc
Q 020107          228 --ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLEG  302 (331)
Q Consensus       228 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~  302 (331)
                        ..+++.. .....-.+..++|.++  ..+.+++..+.  ++.-.+. ++.-+..+   .-...++.+.|.+..     
T Consensus       219 ~~w~~~~~~-~~~~~~~~ld~a~~~~--~~~wa~gg~G~--l~~S~Dg-GktW~~~~~~~~~~~n~~~i~f~~~~-----  287 (302)
T PF14870_consen  219 ETWSEPIIP-IKTNGYGILDLAYRPP--NEIWAVGGSGT--LLVSTDG-GKTWQKDRVGENVPSNLYRIVFVNPD-----  287 (302)
T ss_dssp             EEE---B-T-TSS--S-EEEEEESSS--S-EEEEESTT---EEEESST-TSS-EE-GGGTTSSS---EEEEEETT-----
T ss_pred             cccccccCC-cccCceeeEEEEecCC--CCEEEEeCCcc--EEEeCCC-CccceECccccCCCCceEEEEEcCCC-----
Confidence              1111111 0122334889999988  55556666665  4544443 44444443   234578899998765     


Q ss_pred             cccCcEEEEeecCCCeEEEE
Q 020107          303 KRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       303 ~~~~~~l~s~~~~d~~i~iW  322 (331)
                          +-++-|  .+|.|--|
T Consensus       288 ----~gf~lG--~~G~ll~~  301 (302)
T PF14870_consen  288 ----KGFVLG--QDGVLLRY  301 (302)
T ss_dssp             ----EEEEE---STTEEEEE
T ss_pred             ----ceEEEC--CCcEEEEe
Confidence                455555  58988766

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.34  E-value=0.076  Score=44.98  Aligned_cols=221  Identities=14%  Similarity=0.076  Sum_probs=95.8

Q ss_pred             CcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--eEEeEee---ec----CcEeEEEEcCCCCCCCCeEEEE--cCCc
Q 020107           24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--LELLYRM---DT----AGIFDIKWSPVGGNAGPFLAQA--DADG   92 (331)
Q Consensus        24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~~~~~~~---~~----~~v~~~~~~~~~~~~~~~l~~~--~~dg   92 (331)
                      .++|++.+         ...+.|+|+|+.+....  +.++...   +.    ..-..+.--|+    +.+++++  +.+|
T Consensus        87 Rr~Li~Pg---------L~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~----G~imIS~lGd~~G  153 (461)
T PF05694_consen   87 RRYLILPG---------LRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPD----GRIMISALGDADG  153 (461)
T ss_dssp             S-EEEEEB---------TTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS------EEEEEEEETTS
T ss_pred             CCcEEeee---------eccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCC----ccEEEEeccCCCC
Confidence            46777776         36899999999865432  2222221   11    11233344556    6677664  3333


Q ss_pred             cE-----EEecCCCcc---------cCccEEEEEEcCCCCeEEEEe--------------------cCCeEEEEEccccc
Q 020107           93 GL-----LRDITGEKI---------SSSMCLCLEWNPSATSITVGL--------------------SDGSVSIVSVVESQ  138 (331)
Q Consensus        93 ~i-----iw~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~  138 (331)
                      .-     +.|-++.+.         ....-+.+-|.|..+.+++..                    ...++.+||+.+.+
T Consensus       154 ~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~  233 (461)
T PF05694_consen  154 NGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK  233 (461)
T ss_dssp             -S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred             CCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence            22     333332211         123345677778777777653                    24689999999886


Q ss_pred             eeeeeeeec--ccceeEEEeeC--CCCCcEEEEEcCCCeEEEEEc-cCCCc--eeeeeccc----------------CCC
Q 020107          139 LEVLQQWKA--HEFELWATSFD--VHQPHMVYTGSDDCKFSGWDI-RESPF--KLAFQNSK----------------IHK  195 (331)
Q Consensus       139 ~~~~~~~~~--~~~~v~~~~~~--~~~~~~l~~~~~dg~i~i~d~-~~~~~--~~~~~~~~----------------~~~  195 (331)
                      .  ++++.-  .......+.|.  |....-++.+.-...|..|-- ..++-  ..++....                .-.
T Consensus       234 ~--~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P  311 (461)
T PF05694_consen  234 L--LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP  311 (461)
T ss_dssp             E--EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred             E--eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence            5  444442  22345566665  423334444445555555543 33221  11222100                012


Q ss_pred             cceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeeee-----------------cCCceEEEEECCCCCCeEE
Q 020107          196 MGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSVC-----------------LGGGVWRIKHHPFIPGLVL  257 (331)
Q Consensus       196 ~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~  257 (331)
                      .-|+.|.++. |.++|.... .+|.|+.||+.....|...-...                 ..+...-+..|-|++.+++
T Consensus       312 ~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv  390 (461)
T PF05694_consen  312 PLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV  390 (461)
T ss_dssp             -----EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred             CceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence            4478999999 777766655 78999999999876665441111                 1223466888888855555


Q ss_pred             EEE
Q 020107          258 AAC  260 (331)
Q Consensus       258 ~~~  260 (331)
                      +.+
T Consensus       391 TnS  393 (461)
T PF05694_consen  391 TNS  393 (461)
T ss_dssp             E--
T ss_pred             Eee
Confidence            543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.32  E-value=0.00043  Score=52.31  Aligned_cols=145  Identities=14%  Similarity=0.107  Sum_probs=85.8

Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG  242 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  242 (331)
                      ..+...+.+|.|+-++++..+..  .+..+-+... ..   -+.-...++.|+.+|.|.+|........... .......
T Consensus        31 ~~l~~~sa~~~v~~~~~~k~k~s--~rse~~~~e~-~~---v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~-~~s~~e~  103 (238)
T KOG2444|consen   31 HLLRATSADGLVRERKVRKHKES--CRSERFIDEG-QR---VVTASAKLMVGTSDGAVYVFNWNLEGAHSDR-VCSGEES  103 (238)
T ss_pred             hhhccccCCcccccchhhhhhhh--hhhhhhhhcc-ee---ecccCceEEeecccceEEEecCCccchHHHh-hhccccc
Confidence            34556677899999988864321  1110112222 11   1114567999999999999988742221111 1122223


Q ss_pred             eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCC-cceeeeeecCCCCcccccccCcEEEEe--ecCCCeE
Q 020107          243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHG-SLAYGADWQRGRSSLEGKRKNSLVATC--SFYDRLL  319 (331)
Q Consensus       243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~--~~~d~~i  319 (331)
                      |.++.-.-+...+..+++.++.++.|.+..  .+.+.....|+ .++..+..+..+         ++++++  | .|..+
T Consensus       104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p--~k~~g~~g~h~~~~~e~~ivv~sd---------~~i~~a~~S-~d~~~  171 (238)
T KOG2444|consen  104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKP--NKVLGYVGQHNFESGEELIVVGSD---------EFLKIADTS-HDRVL  171 (238)
T ss_pred             ceeccccccccceeEEeccCCceeeecccc--CceeeeeccccCCCcceeEEecCC---------ceEEeeccc-cchhh
Confidence            333332223223677777888877777765  46666666677 566666666666         577777  7 78888


Q ss_pred             EEEcCCC
Q 020107          320 RIWMPES  326 (331)
Q Consensus       320 ~iW~~~~  326 (331)
                      +.|+++.
T Consensus       172 k~W~ve~  178 (238)
T KOG2444|consen  172 KKWNVEK  178 (238)
T ss_pred             hhcchhh
Confidence            8888864

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.30  E-value=0.013  Score=53.86  Aligned_cols=146  Identities=12%  Similarity=0.073  Sum_probs=97.9

Q ss_pred             CCcEEEEE-cCCCeEEEEEccCCCceeeeecccCCCcc-eEEEEEec----CCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107          161 QPHMVYTG-SDDCKFSGWDIRESPFKLAFQNSKIHKMG-VCCIASIP----SDSNTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       161 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      +.++|+.- .....|+-.|+..++.+..+..   |... |..++-..    .++..-+.|-.+..+..||.|-....+..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~---~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKV---HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeec---CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence            34454443 4568899999999999999988   5433 55443221    12345566777889999999975332221


Q ss_pred             -e--eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107          235 -T--SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVAT  311 (331)
Q Consensus       235 -~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  311 (331)
                       .  .........+++-+.+  +.+++++.+|.|++|+--.  .+....+.+-..+|.+++.+.||         ++|+.
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~~g--~~AKT~lp~lG~pI~~iDvt~DG---------kwila  635 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTED--GYIAVGSNKGDIRLYDRLG--KRAKTALPGLGDPIIGIDVTADG---------KWILA  635 (794)
T ss_pred             ccccccccCCCceEEEecCC--ceEEEEeCCCcEEeecccc--hhhhhcCCCCCCCeeEEEecCCC---------cEEEE
Confidence             0  1223445677777766  8899999999999998432  23333455777899999999999         46555


Q ss_pred             eecCCCeEEEEcC
Q 020107          312 CSFYDRLLRIWMP  324 (331)
Q Consensus       312 ~~~~d~~i~iW~~  324 (331)
                      ..  +..|.+.+.
T Consensus       636 Tc--~tyLlLi~t  646 (794)
T PF08553_consen  636 TC--KTYLLLIDT  646 (794)
T ss_pred             ee--cceEEEEEE
Confidence            54  677777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PHA02713 hypothetical protein; Provisional

Probab=97.23  E-value=0.018  Score=51.83  Aligned_cols=192  Identities=9%  Similarity=0.035  Sum_probs=94.8

Q ss_pred             CCCeEEEEecC------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCCc
Q 020107          116 SATSITVGLSD------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESPF  184 (331)
Q Consensus       116 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~  184 (331)
                      ++...++|+.+      ..+..||+.++.+..+..+.........+..   ++.+.+.|+.++     .+..||..+.+-
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI---DDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE---CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            45566666643      3477889888766444443322222222222   567788888654     478899887642


Q ss_pred             eeeeecccCCCcceEEEEEecCCCCEEEEEecCC-----------------------eEEEEEecCCCCCceeee-eecC
Q 020107          185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-----------------------YLRVWDVRSISKPVNETS-VCLG  240 (331)
Q Consensus       185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----------------------~i~iwd~~~~~~~~~~~~-~~~~  240 (331)
                      ...-.. +........+..   ++.+.+.||.++                       .+..||..+..  ..... ....
T Consensus       380 ~~~~~m-p~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~~  453 (557)
T PHA02713        380 KMLPDM-PIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWTG  453 (557)
T ss_pred             EECCCC-CcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--EeecCCCCcc
Confidence            221111 101111122222   677778887653                       46677776531  11100 0001


Q ss_pred             CceEEEEECCCCCCeEEEEEecC------cEEEEEEcC-cccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107          241 GGVWRIKHHPFIPGLVLAACMHN------GFAVVKVGG-EKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                      ..-.+++...+  .+++.+|.++      .+..|+... .+...+..+....... +++.. ++         .+.+.||
T Consensus       454 r~~~~~~~~~~--~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~~~-~~---------~iyv~Gg  520 (557)
T PHA02713        454 TIRPGVVSHKD--DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTILH-DN---------TIMMLHC  520 (557)
T ss_pred             cccCcEEEECC--EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeEEE-CC---------EEEEEee
Confidence            00112222222  4555554331      233455544 3344444444332222 22222 33         6889999


Q ss_pred             cCCC--eEEEEcCCCcccC
Q 020107          314 FYDR--LLRIWMPESDCLT  330 (331)
Q Consensus       314 ~~d~--~i~iW~~~~~~~~  330 (331)
                       .|+  .+..||+.++...
T Consensus       521 -~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        521 -YESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             -ecceeehhhcCccccccc
Confidence             888  7888998887653

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.21  E-value=0.088  Score=47.58  Aligned_cols=174  Identities=8%  Similarity=-0.026  Sum_probs=94.1

Q ss_pred             ccEEEEEEcCCCCeEEEEe------cCC--eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC------
Q 020107          106 SMCLCLEWNPSATSITVGL------SDG--SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD------  171 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------  171 (331)
                      ..+.+.+.+|+|+.++...      .|.  .|.+++.. +....+  ..+  ...+.-.|+| ++..+.+....      
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~l--t~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQV--LEG--HSLTRPSWSL-DADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccceee--ecC--CCCCCceECC-CCCceEEEecCcceEEE
Confidence            3567888999999876665      243  45555542 222122  222  2377889998 65555555422      


Q ss_pred             ------CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEE---EEecCCCCCc---eeeeeec
Q 020107          172 ------CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV---WDVRSISKPV---NETSVCL  239 (331)
Q Consensus       172 ------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~~~---~~~~~~~  239 (331)
                            +.+.+.+++.+....   .   ....|..+.|+| ++..++... ++.|.+   -....+...+   ..+....
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~---~---~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l  495 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS---R---VPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGL  495 (591)
T ss_pred             eccCCCceEEEEeccCchhhh---c---cCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeeccc
Confidence                  233333443332211   1   356799999999 998887765 477776   3322322111   1111223


Q ss_pred             CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec--CCcceeeeeecCC
Q 020107          240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK--HGSLAYGADWQRG  296 (331)
Q Consensus       240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~  296 (331)
                      ...+.++.|.+++  .|++........+|.+.-. +.....+..  ....+..++-++.
T Consensus       496 ~~~~~~l~W~~~~--~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        496 GDTAVSLDWRTGD--SLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS  551 (591)
T ss_pred             CCccccceEecCC--EEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc
Confidence            3446889999995  3455444444445665443 222112222  3556777777664

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.21  E-value=0.14  Score=45.44  Aligned_cols=69  Identities=17%  Similarity=0.318  Sum_probs=42.5

Q ss_pred             CCcEEEEEcCCC------------------eEEEEEccCCCceeeeecccCCCc----ceEEEEEe---cCCCC---EEE
Q 020107          161 QPHMVYTGSDDC------------------KFSGWDIRESPFKLAFQNSKIHKM----GVCCIASI---PSDSN---TLL  212 (331)
Q Consensus       161 ~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~~----~v~~~~~~---~~~~~---~l~  212 (331)
                      ....++.++.++                  .|.-+|..+++....++.. .|..    ......+.   ..++.   .++
T Consensus       227 ~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~  305 (488)
T cd00216         227 KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIV  305 (488)
T ss_pred             CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC-CCCCcccccCCCCeEEeccccCCCeeEEEE
Confidence            346677776555                  7999999999877665541 1211    00111111   11232   678


Q ss_pred             EEecCCeEEEEEecCCCC
Q 020107          213 TGSYDEYLRVWDVRSISK  230 (331)
Q Consensus       213 ~~~~d~~i~iwd~~~~~~  230 (331)
                      .++.+|.+...|.++++.
T Consensus       306 ~g~~~G~l~ald~~tG~~  323 (488)
T cd00216         306 HAPKNGFFYVLDRTTGKL  323 (488)
T ss_pred             EECCCceEEEEECCCCcE
Confidence            888999999999999743

The alignment model contains an 8-bladed beta-propeller.

>PHA02713 hypothetical protein; Provisional

Probab=97.13  E-value=0.025  Score=50.91  Aligned_cols=94  Identities=11%  Similarity=0.120  Sum_probs=54.0

Q ss_pred             eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEEccC-CCceeeeecccCCCcceEE
Q 020107          128 SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWDIRE-SPFKLAFQNSKIHKMGVCC  200 (331)
Q Consensus       128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~~v~~  200 (331)
                      .+..||..++++..+..+.........+.+   ++.+.+.|+.+      ..+..||..+ .+-...-.. +........
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~  508 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHT  508 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-Cccccccee
Confidence            577899988877655544322222222222   45777777754      2467899887 443222111 112223333


Q ss_pred             EEEecCCCCEEEEEecCC--eEEEEEecCC
Q 020107          201 IASIPSDSNTLLTGSYDE--YLRVWDVRSI  228 (331)
Q Consensus       201 ~~~~~~~~~~l~~~~~d~--~i~iwd~~~~  228 (331)
                      +.+   ++.+.++|+.|+  .+..||..+.
T Consensus       509 ~~~---~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        509 ILH---DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             EEE---CCEEEEEeeecceeehhhcCcccc
Confidence            333   678999999888  6777777763

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.019  Score=49.24  Aligned_cols=145  Identities=14%  Similarity=0.203  Sum_probs=92.7

Q ss_pred             CCCe-EEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC------CcEEEEEcCCCeEEEEEccCCCceeee
Q 020107          116 SATS-ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ------PHMVYTGSDDCKFSGWDIRESPFKLAF  188 (331)
Q Consensus       116 ~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~  188 (331)
                      +.++ +..+.....++-.|++.|+.  +..++-+.. |.-+.+.|..      ...-+.|-.+..|.-||.|-... ..+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKI--VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl  419 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKI--VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKL  419 (644)
T ss_pred             ccceEeeCCCCcCcceeeeccccee--eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-cee
Confidence            3344 44555567788889999876  777776664 7777777632      12234566788999999984332 111


Q ss_pred             ecccCC----CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107          189 QNSKIH----KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG  264 (331)
Q Consensus       189 ~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  264 (331)
                      ...+.|    .....|.+-.  ...++++|+.+|.||+||- .+ ....+.+.+.+.+|..+..+.+| ..++++| +..
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~-~~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~ty  493 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IG-RRAKTALPGLGDAIKHVDVTADG-KWILATC-KTY  493 (644)
T ss_pred             eeeeccccccccccceeeec--CCceEEEeecCCcEEeehh-hh-hhhhhcccccCCceeeEEeeccC-cEEEEec-ccE
Confidence            111112    2234455444  3558999999999999997 33 33344467889999999999996 4555554 445


Q ss_pred             EEEEEE
Q 020107          265 FAVVKV  270 (331)
Q Consensus       265 ~~~~~~  270 (331)
                      +.+.+.
T Consensus       494 LlLi~t  499 (644)
T KOG2395|consen  494 LLLIDT  499 (644)
T ss_pred             EEEEEE
Confidence            545444

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.06  E-value=0.098  Score=40.88  Aligned_cols=134  Identities=17%  Similarity=0.084  Sum_probs=86.9

Q ss_pred             CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc
Q 020107          117 ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM  196 (331)
Q Consensus       117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  196 (331)
                      ..+++.|+..+.+.-.|..+++..-...+   ..++.+-+.-  -+++++.|...|.+++.+..++.....+..    .+
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~----~~   93 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI----LE   93 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeee----hh
Confidence            34678888899999999988865222222   2234333332  246799999999999999999987777775    22


Q ss_pred             ceEE-EEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceE-EEEECCCCCCeEEEEEecCc
Q 020107          197 GVCC-IASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVW-RIKHHPFIPGLVLAACMHNG  264 (331)
Q Consensus       197 ~v~~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~  264 (331)
                      .|.+ ....+ ++.++..|+.|++.+..|.++. ..+..  ..-.+.+. +=+..|.. +.+.++...+.
T Consensus        94 ~vk~~a~~d~-~~glIycgshd~~~yalD~~~~-~cVyk--skcgG~~f~sP~i~~g~-~sly~a~t~G~  158 (354)
T KOG4649|consen   94 TVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTY-GCVYK--SKCGGGTFVSPVIAPGD-GSLYAAITAGA  158 (354)
T ss_pred             hhccceEEcC-CCceEEEecCCCcEEEeccccc-ceEEe--cccCCceeccceecCCC-ceEEEEeccce
Confidence            3322 33345 8899999999999999999984 44444  33333332 23344422 44555555555

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.02  E-value=0.13  Score=41.72  Aligned_cols=225  Identities=12%  Similarity=0.117  Sum_probs=124.7

Q ss_pred             CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc
Q 020107           24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK  102 (331)
Q Consensus        24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~  102 (331)
                      ++.|++|+          .+| +++++..... ....+  .+...|..+...|+    -+.|++-+. +.+ ++++....
T Consensus         7 ~~~L~vGt----------~~G-l~~~~~~~~~-~~~~i--~~~~~I~ql~vl~~----~~~llvLsd-~~l~~~~L~~l~   67 (275)
T PF00780_consen    7 GDRLLVGT----------EDG-LYVYDLSDPS-KPTRI--LKLSSITQLSVLPE----LNLLLVLSD-GQLYVYDLDSLE   67 (275)
T ss_pred             CCEEEEEE----------CCC-EEEEEecCCc-cceeE--eecceEEEEEEecc----cCEEEEEcC-CccEEEEchhhc
Confidence            47899998          677 9999993332 12222  23344999999998    556665544 777 55544321


Q ss_pred             cc--------------------CccEEEEE--EcCCCCeEEEEecCCeEEEEEcccc--ce-eeeeeeecccceeEEEee
Q 020107          103 IS--------------------SSMCLCLE--WNPSATSITVGLSDGSVSIVSVVES--QL-EVLQQWKAHEFELWATSF  157 (331)
Q Consensus       103 ~~--------------------~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~--~~-~~~~~~~~~~~~v~~~~~  157 (331)
                      ..                    ...+...+  -...+...++......|.+|.....  +. ...+++.- ...+.+++|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~  146 (275)
T PF00780_consen   68 PVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAF  146 (275)
T ss_pred             cccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEE
Confidence            11                    12223333  1123333333444458888888763  22 34555553 467889999


Q ss_pred             CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC---------CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107          158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI---------HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      .+   +.++.|..+ ...+.|+.++.....+.....         ...++..+...  ++.+|++  .|..-.+.|... 
T Consensus       147 ~~---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~--~~~~g~fv~~~G-  217 (275)
T PF00780_consen  147 LG---NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLC--YDNIGVFVNKNG-  217 (275)
T ss_pred             eC---CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEE--ecceEEEEcCCC-
Confidence            74   567776644 477899997765444322110         11234344433  3445543  344444555543 


Q ss_pred             CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107          229 SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH  284 (331)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  284 (331)
                       .+.......-...+.++++..   .++++. .++.+.++++.+  +++++++...
T Consensus       218 -~~~r~~~i~W~~~p~~~~~~~---pyli~~-~~~~iEV~~~~~--~~lvQ~i~~~  266 (275)
T PF00780_consen  218 -EPSRKSTIQWSSAPQSVAYSS---PYLIAF-SSNSIEVRSLET--GELVQTIPLP  266 (275)
T ss_pred             -CcCcccEEEcCCchhEEEEEC---CEEEEE-CCCEEEEEECcC--CcEEEEEECC
Confidence             222221234455677777754   344444 457788998888  5777777653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.97  E-value=0.0038  Score=34.93  Aligned_cols=31  Identities=29%  Similarity=0.625  Sum_probs=26.0

Q ss_pred             CccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107          105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus       105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  135 (331)
                      ...|.+++|+|..++||.++.+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4568888899988889999999998888874

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.96  E-value=0.0035  Score=47.59  Aligned_cols=107  Identities=16%  Similarity=0.157  Sum_probs=64.5

Q ss_pred             CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107          116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK  195 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  195 (331)
                      -+..+++|+.+|.|.+|....... ....+......|.+.--.-.++.+..++..+|.|+.|++.-.+.......   |.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~---h~  144 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGA-HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ---HN  144 (238)
T ss_pred             cCceEEeecccceEEEecCCccch-HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc---cc
Confidence            346799999999999998863111 11111122233333333323556889999999999999987765444443   55


Q ss_pred             -cceEEEEEecCCCCEEEEE--ecCCeEEEEEecC
Q 020107          196 -MGVCCIASIPSDSNTLLTG--SYDEYLRVWDVRS  227 (331)
Q Consensus       196 -~~v~~~~~~~~~~~~l~~~--~~d~~i~iwd~~~  227 (331)
                       .++....... .+..++..  +.|..++.|++..
T Consensus       145 ~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  145 FESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence             4444444444 45555555  6666666666654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.0054  Score=56.72  Aligned_cols=103  Identities=18%  Similarity=0.318  Sum_probs=74.0

Q ss_pred             CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107          116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK  195 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  195 (331)
                      .+..++.|+..|.+...|...+ ..+...-..-..+|++++|+. ++..++.|-.+|.|.+||...++..+.+..   |.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e---~~  172 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITE---HG  172 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeee---cC
Confidence            4456889999999999988753 222222223467899999995 899999999999999999999888877777   44


Q ss_pred             cceEE---EEEecCCCCEEEEEecCCeEEEEEec
Q 020107          196 MGVCC---IASIPSDSNTLLTGSYDEYLRVWDVR  226 (331)
Q Consensus       196 ~~v~~---~~~~~~~~~~l~~~~~d~~i~iwd~~  226 (331)
                      .+.+.   +.+.. ++..++++...|.  +|.+.
T Consensus       173 ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  173 APVTGVIFVGRTS-QNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CccceEEEEEEeC-CCcEEEEccCCCc--eEEEE
Confidence            44433   33444 4556788777775  56553

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.94  E-value=0.34  Score=45.17  Aligned_cols=220  Identities=9%  Similarity=0.022  Sum_probs=136.4

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE---------
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL---------   94 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i---------   94 (331)
                      ..||.+.           .+.+++..++.-++. .+.+  .-......+++.+.    ...+++.+.....         
T Consensus       685 d~l~~~~-----------~~~l~i~tid~iqkl~irtv--pl~~~prrI~~q~~----sl~~~v~s~r~e~~~~~~~ee~  747 (1096)
T KOG1897|consen  685 DSLASAN-----------GGALTIGTIDEIQKLHIRTV--PLGESPRRICYQES----SLTFGVLSNRIESSAEYYGEEY  747 (1096)
T ss_pred             ceEEEec-----------CCceEEEEecchhhcceeee--cCCCChhheEeccc----ceEEEEEecccccchhhcCCcc
Confidence            5677775           788888888775422 2222  22344667777775    4444444332211         


Q ss_pred             ------EEecCCCcc---c-------CccEEEEEEcCC-CCeEEEEec----------CCeEEEEEccc-cceeeeeeee
Q 020107           95 ------LRDITGEKI---S-------SSMCLCLEWNPS-ATSITVGLS----------DGSVSIVSVVE-SQLEVLQQWK  146 (331)
Q Consensus        95 ------iw~~~~~~~---~-------~~~v~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~-~~~~~~~~~~  146 (331)
                            +.|-.+.+.   |       ...+.+..|..| +.++++|..          .|.|.++.... ++++.+.+..
T Consensus       748 ~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~  827 (1096)
T KOG1897|consen  748 EVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV  827 (1096)
T ss_pred             eEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence                  344333222   1       223455568777 667887753          58889998887 5444444433


Q ss_pred             cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107          147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR  226 (331)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~  226 (331)
                      - ++.+.++..  .+++++|  +-+..|++|+..+.+....-.   .+..++..+...- .++.+++|..-+.+.+.-.+
T Consensus       828 v-~Gav~aL~~--fngkllA--~In~~vrLye~t~~~eLr~e~---~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  828 V-KGAVYALVE--FNGKLLA--GINQSVRLYEWTTERELRIEC---NISNPIIALDLQV-KGDEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             e-ccceeehhh--hCCeEEE--ecCcEEEEEEccccceehhhh---cccCCeEEEEEEe-cCcEEEEeeccceEEEEEEe
Confidence            2 344555543  2445554  346889999998875443333   3788889998888 89999999998999888877


Q ss_pred             CCCCCceee-eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          227 SISKPVNET-SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       227 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      ..+..+.+. ..-+....+++.+-.+  ..++.+-..+.+.+....+
T Consensus       899 ~~eg~f~evArD~~p~Wmtaveil~~--d~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  899 GDEGNFEEVARDYNPNWMTAVEILDD--DTYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             ccCCceEEeehhhCccceeeEEEecC--ceEEeecccccEEEEEecC
Confidence            654333331 2346677888888776  6666776777766666654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.90  E-value=0.16  Score=40.59  Aligned_cols=158  Identities=13%  Similarity=0.110  Sum_probs=94.7

Q ss_pred             ecCcEeEEEEcCCCCCCCCeEEEEcCCcc-EEEecCCCccc-------CccEEEEEEcCCCCeEEEEecCCeEEEEEccc
Q 020107           65 DTAGIFDIKWSPVGGNAGPFLAQADADGG-LLRDITGEKIS-------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVE  136 (331)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~-iiw~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  136 (331)
                      -...+.++.|+|+    .+.|++...... +++-...++.-       -...-.+.+..++++.++--.++.+.++.+..
T Consensus        84 ~~~nvS~LTynp~----~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          84 ETANVSSLTYNPD----TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccccceeeCCC----cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            3455999999999    555555544444 44444443331       11123566666666666666688888887765


Q ss_pred             cce--------eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC-------CcceEEE
Q 020107          137 SQL--------EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH-------KMGVCCI  201 (331)
Q Consensus       137 ~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~v~~~  201 (331)
                      ...        .++............++|.| ..+.|..+-.-.-+.||................+       -..|.++
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            421        01111122255678999999 5566666666666777766543311111110011       2347888


Q ss_pred             EEecCCCCEEEEEecCCeEEEEEecC
Q 020107          202 ASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       202 ~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      .|++..+.+|+-+.+++.+.-.|...
T Consensus       239 ~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         239 EFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             eecCCCCcEEEEecCCceEEEEecCC
Confidence            99987888888888999888888775

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.85  E-value=0.29  Score=44.30  Aligned_cols=139  Identities=12%  Similarity=0.032  Sum_probs=80.5

Q ss_pred             CCeEEEEcCCc--cE-----EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecC------CeEEEEEccccceee
Q 020107           82 GPFLAQADADG--GL-----LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSD------GSVSIVSVVESQLEV  141 (331)
Q Consensus        82 ~~~l~~~~~dg--~i-----iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~  141 (331)
                      +.+++.|+.++  ..     .++..+...       ....-.+++.. ++...++|+.|      .++..||..++++..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            55777787775  22     444444321       22222333333 45677888888      367889999888765


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                      +..+...........   .++.+.++|+.||     .+..||.++.+-...-.    .............++.+.++||.
T Consensus       364 ~a~M~~~R~~~~v~~---l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~----m~~~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAV---LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP----MLTRRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             cCCccCccccceeEE---ECCEEEEEeccccccccccEEEecCCCCcccccCC----CCcceeeeEEEEECCEEEEEcCc
Confidence            555543333232222   2668889999886     47788888765322221    12233333333337888888886


Q ss_pred             CC------eEEEEEecCC
Q 020107          217 DE------YLRVWDVRSI  228 (331)
Q Consensus       217 d~------~i~iwd~~~~  228 (331)
                      ++      ++..||..+.
T Consensus       437 ~~~~~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETN  454 (571)
T ss_pred             CCCccccceEEEEcCCCC
Confidence            64      4677877763

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.85  E-value=0.0066  Score=33.97  Aligned_cols=32  Identities=19%  Similarity=0.337  Sum_probs=28.9

Q ss_pred             CCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107          194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR  226 (331)
Q Consensus       194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~  226 (331)
                      ....|.+++|+| ..++||.+..+|.|.++.+.
T Consensus        10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            356799999999 99999999999999999983

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.83  E-value=0.28  Score=42.59  Aligned_cols=240  Identities=12%  Similarity=0.047  Sum_probs=126.2

Q ss_pred             EeEEEEcCCCCCCCCeEEEE-cCCcc----E-EEecCCCcccCcc-----EEEEEEcCCCCeEEEEecC-----------
Q 020107           69 IFDIKWSPVGGNAGPFLAQA-DADGG----L-LRDITGEKISSSM-----CLCLEWNPSATSITVGLSD-----------  126 (331)
Q Consensus        69 v~~~~~~~~~~~~~~~l~~~-~~dg~----i-iw~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d-----------  126 (331)
                      +....++|+    ++++|.+ +..|.    + +.|+.+++.....     ...+.|.++++.|+....+           
T Consensus       126 ~~~~~~Spd----g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  126 LGGFSVSPD----GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEETTT----SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             eeeeeECCC----CCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            446789999    7777755 44444    2 8999887653222     1238999998887665432           


Q ss_pred             CeEEEEEccccceeeeeeeecccce--eEEEeeCCCCCcEEEE-EcCC---CeEEEEEccCC----CceeeeecccCCCc
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEFE--LWATSFDVHQPHMVYT-GSDD---CKFSGWDIRES----PFKLAFQNSKIHKM  196 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~-~~~d---g~i~i~d~~~~----~~~~~~~~~~~~~~  196 (331)
                      ..|+.|.+.+........+......  ...+..++ ++++++. ....   ..+.+.|+..+    .....+..   ...
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~---~~~  277 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP---RED  277 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE---SSS
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC---CCC
Confidence            2378888877554323444433322  56778887 6666554 3322   35778888764    11222222   333


Q ss_pred             ce-EEEEEecCCCCEEEEEe---cCCeEEEEEecCCCC-CceeeeeecCC--ceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107          197 GV-CCIASIPSDSNTLLTGS---YDEYLRVWDVRSISK-PVNETSVCLGG--GVWRIKHHPFIPGLVLAACMHNGFAVVK  269 (331)
Q Consensus       197 ~v-~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~-~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (331)
                      .+ ..+...  .+.+++...   ..+.|.-.++..... ........+..  .+..+....   ..++..-..++...+.
T Consensus       278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~---~~Lvl~~~~~~~~~l~  352 (414)
T PF02897_consen  278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK---DYLVLSYRENGSSRLR  352 (414)
T ss_dssp             S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET---TEEEEEEEETTEEEEE
T ss_pred             ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC---CEEEEEEEECCccEEE
Confidence            34 334333  343433332   345677777776532 12223455555  455555544   3455555555544444


Q ss_pred             EcCcc-cceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCccc
Q 020107          270 VGGEK-AEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDCL  329 (331)
Q Consensus       270 ~~~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~~  329 (331)
                      +.+.. +.....+.. -.+.|..+...++..        .+.++.++  .-.++..||+.++.+
T Consensus       353 v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~--------~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  353 VYDLDDGKESREIPLPEAGSVSGVSGDFDSD--------ELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEETT-TEEEEEEESSSSSEEEEEES-TT-S--------EEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEECCCCcEEeeecCCcceEEeccCCCCCCC--------EEEEEEeCCCCCCEEEEEECCCCCE
Confidence            44433 344444332 344566666656554        45555542  346888899888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.80  E-value=0.19  Score=40.23  Aligned_cols=153  Identities=12%  Similarity=-0.065  Sum_probs=85.1

Q ss_pred             eeEEEeeCCCCCcEEEEEc---CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEE-ec
Q 020107          151 ELWATSFDVHQPHMVYTGS---DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD-VR  226 (331)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd-~~  226 (331)
                      .+.+.++++ ++..++...   ....+.++...  ........    ...+..-.|++ ++...+....+...+++. ..
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~----g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~   96 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT----GGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSA   96 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc----CCccccccccC-CCCEEEEEcCCCceEEEEecC
Confidence            688999998 556554444   33445555443  32333222    33788889999 777777766666666664 22


Q ss_pred             CCCC-CceeeeeecCCceEEEEECCCCCCeEEEEEe--cCcEEEEEEcC-ccc------ceeEEeecCCcceeeeeecCC
Q 020107          227 SISK-PVNETSVCLGGGVWRIKHHPFIPGLVLAACM--HNGFAVVKVGG-EKA------EVLETYAKHGSLAYGADWQRG  296 (331)
Q Consensus       227 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~------~~~~~~~~h~~~v~~~~~~~~  296 (331)
                      .+.. +...-.....+.|..++++||+....++...  .+.+.+--+.. ..+      ............+++++|.++
T Consensus        97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen   97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            2222 2211011122289999999999655555522  34555544432 222      111222233568899999999


Q ss_pred             CCcccccccCcEEEEeecCCCeEE
Q 020107          297 RSSLEGKRKNSLVATCSFYDRLLR  320 (331)
Q Consensus       297 ~~~~~~~~~~~~l~s~~~~d~~i~  320 (331)
                      .         .+++.+...++.+.
T Consensus       177 ~---------~L~V~~~~~~~~~~  191 (253)
T PF10647_consen  177 S---------TLVVLGRSAGGPVV  191 (253)
T ss_pred             C---------EEEEEeCCCCCcee
Confidence            8         56655552444333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.79  E-value=0.12  Score=46.66  Aligned_cols=155  Identities=12%  Similarity=0.022  Sum_probs=79.7

Q ss_pred             CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc------CCC--eEEEEEccCCCceeeeecccCCCcc
Q 020107          126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS------DDC--KFSGWDIRESPFKLAFQNSKIHKMG  197 (331)
Q Consensus       126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~  197 (331)
                      +|.+.-.+  .+...++....+....+.+.+++| +++.++...      .|.  .|.+++.. +. ...+..    ...
T Consensus       328 ~G~l~~~~--~~~~~pv~g~~g~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~-~~~lt~----g~~  398 (591)
T PRK13616        328 DGSLVSVD--GQGVTPVPGAFGQMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GV-AVQVLE----GHS  398 (591)
T ss_pred             CCeEEEec--CCCeeeCCCccccccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Cc-ceeeec----CCC
Confidence            56554433  222233333323334678889999 666555443      233  45555542 22 233322    223


Q ss_pred             eEEEEEecCCCCEEEEEecC------------CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107          198 VCCIASIPSDSNTLLTGSYD------------EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF  265 (331)
Q Consensus       198 v~~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  265 (331)
                      ...-.|+| ++..+++....            +.+.+.+++.+ .. .   ....+.|..++|+||+....++.  .+.+
T Consensus       399 ~t~PsWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g-e~-~---~~~~g~Issl~wSpDG~RiA~i~--~g~v  470 (591)
T PRK13616        399 LTRPSWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS-AV-A---SRVPGPISELQLSRDGVRAAMII--GGKV  470 (591)
T ss_pred             CCCceECC-CCCceEEEecCcceEEEeccCCCceEEEEeccCc-hh-h---hccCCCcCeEEECCCCCEEEEEE--CCEE
Confidence            78889999 87777666432            22222233221 11 1   13356799999999985544444  3555


Q ss_pred             EEEEE-cCcccc-ee---EEee-cCCcceeeeeecCCC
Q 020107          266 AVVKV-GGEKAE-VL---ETYA-KHGSLAYGADWQRGR  297 (331)
Q Consensus       266 ~~~~~-~~~~~~-~~---~~~~-~h~~~v~~~~~~~~~  297 (331)
                      .+--+ ....+. .+   ..+. +-...+.+++|..++
T Consensus       471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~  508 (591)
T PRK13616        471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD  508 (591)
T ss_pred             EEEEEEeCCCCceeecccEEeecccCCccccceEecCC
Confidence            44222 222232 11   1122 233346889999998

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.70  E-value=0.12  Score=44.55  Aligned_cols=126  Identities=13%  Similarity=0.105  Sum_probs=87.1

Q ss_pred             EEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC-------CEEEEEecCCeEEEEEecCCCCCceeee
Q 020107          164 MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS-------NTLLTGSYDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~~~~~d~~i~iwd~~~~~~~~~~~~  236 (331)
                      ++.++.....|+-.|+..++.+..+..   +.. |+-+.+.| +.       ..-+.|-.|..|.-||.|-.........
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~---~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKF---EDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeec---cCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            455566677899999999999999988   444 77777877 32       2234566788899999996443222111


Q ss_pred             eec----CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107          237 VCL----GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       237 ~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  298 (331)
                      ..|    .....|.+-..+  +.+++++.++.|++|+--.  .+....+.+-..+|..+..+.+|.
T Consensus       423 q~kqy~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdri~--~~AKTAlPgLG~~I~hVdvtadGK  484 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTES--GYIVVGSLKGDIRLYDRIG--RRAKTALPGLGDAIKHVDVTADGK  484 (644)
T ss_pred             eccccccccccceeeecCC--ceEEEeecCCcEEeehhhh--hhhhhcccccCCceeeEEeeccCc
Confidence            222    223455555555  8899999999999988633  233445677888999999999994

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.66  E-value=0.34  Score=44.19  Aligned_cols=108  Identities=8%  Similarity=0.146  Sum_probs=70.7

Q ss_pred             CCCeEEEEecCCeEEEEEccc-------c-----------ceeeeeeeecccceeEEEeeC--CCCCcEEEEEcCCCeEE
Q 020107          116 SATSITVGLSDGSVSIVSVVE-------S-----------QLEVLQQWKAHEFELWATSFD--VHQPHMVYTGSDDCKFS  175 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~-------~-----------~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~  175 (331)
                      ..+.|+++..||.|.+|.+++       .           ..+|...+. -...+++++++  . ..++||+++....|.
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VT  190 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVT  190 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEE
Confidence            446788899999999997643       0           011222333 23468899987  5 567888888888888


Q ss_pred             EEEccCCCceeeeecccCCCcceEEEEEecCC--CC---EEEEEecCCeEEEEEe
Q 020107          176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSD--SN---TLLTGSYDEYLRVWDV  225 (331)
Q Consensus       176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~d~~i~iwd~  225 (331)
                      ||-...............+..-|.+|+|.+.+  +.   .+++++-.|.+.+|++
T Consensus       191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            87665422111111011256779999998743  22   7888889999999988

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.62  E-value=0.25  Score=39.18  Aligned_cols=182  Identities=13%  Similarity=0.043  Sum_probs=105.9

Q ss_pred             EEEEEEcCCCCeEEEEecCC--eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107          108 CLCLEWNPSATSITVGLSDG--SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK  185 (331)
Q Consensus       108 v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (331)
                      ...+.|..++.++-+.+.-|  .|+.+|+.+++......+.. ..--..++..  +..+....=.++...+||..+-+.+
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence            34666766666666666655  78999999987644444432 2222334443  3466666678899999999988777


Q ss_pred             eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee-eecCC---ceEEEEECCCCCCeEEEEE-
Q 020107          186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS-VCLGG---GVWRIKHHPFIPGLVLAAC-  260 (331)
Q Consensus       186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~~~~~~-  260 (331)
                      ..+..    ...=..++.   ++..|+.......|.++|..+.+. ...+. .....   .++.+.|-.   +.+.+-- 
T Consensus       124 ~~~~y----~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i~---G~IyANVW  192 (264)
T PF05096_consen  124 GTFPY----PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYIN---GKIYANVW  192 (264)
T ss_dssp             EEEE-----SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEEET---TEEEEEET
T ss_pred             EEEec----CCcceEEEc---CCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEEEc---CEEEEEeC
Confidence            77765    334455653   566666666677899999887532 22211 12222   355677763   4555554 


Q ss_pred             ecCcEEEEEEcCcccceeEEeec------------C---CcceeeeeecCCCCcccccccCcEEEEee
Q 020107          261 MHNGFAVVKVGGEKAEVLETYAK------------H---GSLAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~------------h---~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                      ..+.  |+.+...+++....+.-            +   ..-.+++++.|...        ++++||=
T Consensus       193 ~td~--I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~--------~l~vTGK  250 (264)
T PF05096_consen  193 QTDR--IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD--------RLFVTGK  250 (264)
T ss_dssp             TSSE--EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT--------EEEEEET
T ss_pred             CCCe--EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC--------EEEEEeC
Confidence            3344  56666655676665531            1   34678999999885        7788774

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.59  E-value=0.32  Score=39.89  Aligned_cols=233  Identities=8%  Similarity=0.003  Sum_probs=99.5

Q ss_pred             EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE--------EEecCCCccc---CccEEEEEEcCCCCeEEEEecCC
Q 020107           59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL--------LRDITGEKIS---SSMCLCLEWNPSATSITVGLSDG  127 (331)
Q Consensus        59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i--------iw~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg  127 (331)
                      +.+...-...+.+|.|...    ..-+++|. .+.+        -|........   .....++.|..+ +.+++ +..+
T Consensus         9 ~~v~l~t~~~l~dV~F~d~----~~G~~VG~-~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g   81 (302)
T PF14870_consen    9 QQVSLPTDKPLLDVAFVDP----NHGWAVGA-YGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG   81 (302)
T ss_dssp             EEEE-S-SS-EEEEEESSS----S-EEEEET-TTEEEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT
T ss_pred             EEeecCCCCceEEEEEecC----CEEEEEec-CCEEEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc
Confidence            3333344567999999955    55666665 4555        3443332222   234667777643 33444 4555


Q ss_pred             eEEEEEcccc-ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107          128 SVSIVSVVES-QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS  206 (331)
Q Consensus       128 ~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  206 (331)
                      .| +...+.+ .++.+..-..-......+.... +...+++ +..|.  ||-...+-..-.... ..-...+..+.-++ 
T Consensus        82 ~l-l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~-~~~G~--iy~T~DgG~tW~~~~-~~~~gs~~~~~r~~-  154 (302)
T PF14870_consen   82 LL-LHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAELA-GDRGA--IYRTTDGGKTWQAVV-SETSGSINDITRSS-  154 (302)
T ss_dssp             EE-EEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEE-ETT----EEEESSTTSSEEEEE--S----EEEEEE-T-
T ss_pred             eE-EEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEE-cCCCc--EEEeCCCCCCeeEcc-cCCcceeEeEEECC-
Confidence            43 3333333 2322211001111222333222 3333333 34454  343333322211111 11456788888888 


Q ss_pred             CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE----ee
Q 020107          207 DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET----YA  282 (331)
Q Consensus       207 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  282 (331)
                      ++.+++++.......-||--.  .........-...|..|.|.|++ .+++++ ..+.++.-+.... .+....    ..
T Consensus       155 dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~-~lw~~~-~Gg~~~~s~~~~~-~~~w~~~~~~~~  229 (302)
T PF14870_consen  155 DGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDG-NLWMLA-RGGQIQFSDDPDD-GETWSEPIIPIK  229 (302)
T ss_dssp             TS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TTE-EEEE---B-TTS
T ss_pred             CCcEEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCC-CEEEEe-CCcEEEEccCCCC-ccccccccCCcc
Confidence            999999998777677787543  22333234567889999999995 554544 4444333321111 111111    11


Q ss_pred             cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107          283 KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI  321 (331)
Q Consensus       283 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i  321 (331)
                      ...-.+.+++|.+++         ...|+|+  .|.+..
T Consensus       230 ~~~~~~ld~a~~~~~---------~~wa~gg--~G~l~~  257 (302)
T PF14870_consen  230 TNGYGILDLAYRPPN---------EIWAVGG--SGTLLV  257 (302)
T ss_dssp             S--S-EEEEEESSSS----------EEEEES--TT-EEE
T ss_pred             cCceeeEEEEecCCC---------CEEEEeC--CccEEE
Confidence            122247889999887         5777666  565543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.43  Score=40.94  Aligned_cols=200  Identities=15%  Similarity=0.117  Sum_probs=118.2

Q ss_pred             EEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc--CCCeEEEEEccCCCce
Q 020107          109 LCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS--DDCKFSGWDIRESPFK  185 (331)
Q Consensus       109 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~  185 (331)
                      ..++.++.++.+++.. .++.|.+.|....+.  ...... ......++++|.+....++-.  .++.+.+.|..+.+..
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--LGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccce--eeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            4677888888655554 468999999776543  222221 225668899984444444444  3689999998888766


Q ss_pred             eeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceee---eeecCCceEEEEECCCCCCeEEEEEe
Q 020107          186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNET---SVCLGGGVWRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~  261 (331)
                      .....   -..+ ..+++.| ++..++... .++.|.+.|.... ....-.   ..........+.++|++...+++-..
T Consensus       154 ~~~~v---G~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         154 ATIPV---GNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             EEEec---CCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence            65433   2233 8899999 887555554 7889999997663 211100   02333455778999998444444444


Q ss_pred             cCcEEEEEEcCcccceeEE-ee-cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          262 HNGFAVVKVGGEKAEVLET-YA-KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~-~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ...-.+..+.......... .. +-. ....+...|++         ..+.......+.+.+-|..+.
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g---------~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAG---------KAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCC---------CEEEEEecCCCeEEEEeCCCC
Confidence            3212244443332333333 11 122 45668888888         455554314577777766553

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.54  E-value=0.26  Score=44.58  Aligned_cols=185  Identities=12%  Similarity=0.136  Sum_probs=101.9

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCc-EeEEEEcCCCCCCCCeEEEEcCCccE------EEe
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG-IFDIKWSPVGGNAGPFLAQADADGGL------LRD   97 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~dg~i------iw~   97 (331)
                      .+.++|+++.    ....-..+..||...++  ......-.... =.+++- -+    +.+.|+|+.||.-      .||
T Consensus       334 ~lYv~GG~~~----~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~v~~-l~----g~iYavGG~dg~~~l~svE~YD  402 (571)
T KOG4441|consen  334 KLYVVGGYDS----GSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFGVAV-LD----GKLYAVGGFDGEKSLNSVECYD  402 (571)
T ss_pred             EEEEEccccC----CCcccceEEEecCCCCc--eeccCCccCccccceeEE-EC----CEEEEEeccccccccccEEEec
Confidence            5778887542    01134677788887765  22221111111 111111 12    6789999999876      666


Q ss_pred             cCCCcccC-----ccEEEEEE-cCCCCeEEEEecC------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE
Q 020107           98 ITGEKISS-----SMCLCLEW-NPSATSITVGLSD------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV  165 (331)
Q Consensus        98 ~~~~~~~~-----~~v~~~~~-~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (331)
                      ..+.+.+.     ........ .-++...++|+.+      .++..||..++++..+..+........ ++.  .++.+.
T Consensus       403 p~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~--~~~~iY  479 (571)
T KOG4441|consen  403 PVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV--LNGKIY  479 (571)
T ss_pred             CCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE--ECCEEE
Confidence            66654421     11222222 2266677777754      457889999988866666553333333 332  256888


Q ss_pred             EEEcCCC-----eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCe-----EEEEEecC
Q 020107          166 YTGSDDC-----KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY-----LRVWDVRS  227 (331)
Q Consensus       166 ~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----i~iwd~~~  227 (331)
                      +.|+.|+     +|..||..+.+-... ...+.....+..+.+   ++.+.++|+.|+.     |..||..+
T Consensus       480 vvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  480 VVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             EECCccCCCccceEEEEcCCCCceeEc-ccCccccccccEEEE---CCEEEEEecccCccccceeEEcCCCC
Confidence            8888776     377899887764333 211112333322333   6778888887763     55565554

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.49  E-value=0.00032  Score=63.11  Aligned_cols=177  Identities=20%  Similarity=0.289  Sum_probs=103.8

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+.-|.|||+-+..-++.++-          +++.|++.+.+...   +.++++|...+.+++|-..    + ++... 
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~----------~~~~i~lL~~~ra~---~~l~rsHs~~~~d~a~~~~----g-~~~l~-  241 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGL----------KGGEIRLLNINRAL---RSLFRSHSQRVTDMAFFAE----G-VLKLA-  241 (1283)
T ss_pred             CCcceeeecccccccceeeecc----------CCCceeEeeechHH---HHHHHhcCCCcccHHHHhh----c-hhhhe-
Confidence            3557899999988666777775          78999998887754   2444669999999988776    2 22211 


Q ss_pred             CCccEEEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-cc--eeeeeeeeccc-ceeEEEeeCCCC----
Q 020107           90 ADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-SQ--LEVLQQWKAHE-FELWATSFDVHQ----  161 (331)
Q Consensus        90 ~dg~iiw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~-~~v~~~~~~~~~----  161 (331)
                                            ..+|||..++.++.||.++.|.+.- ++  ..++..++.|+ .+-.|.-++.+.    
T Consensus       242 ----------------------~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v  299 (1283)
T KOG1916|consen  242 ----------------------SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVV  299 (1283)
T ss_pred             ----------------------eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCC
Confidence                                  1688999999999999988887643 11  12345566665 222222233211    


Q ss_pred             --C--cEEEEEc-CCCeEEEEEccCCCce-----eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          162 --P--HMVYTGS-DDCKFSGWDIRESPFK-----LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       162 --~--~~l~~~~-~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                        +  .++++++ .+..+++|.....+|.     ..+.....|...|+.+.....--..++.-..++.|.+|--+.
T Consensus       300 ~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  300 SIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             ccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence              1  1233433 4567888887766654     112111123333333221110012244456788888886554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.45  E-value=0.19  Score=44.15  Aligned_cols=155  Identities=13%  Similarity=0.108  Sum_probs=90.5

Q ss_pred             ceeEEEeeCCCCCcEEEEEc--CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC----CCCEEEEEecCCeEEEE
Q 020107          150 FELWATSFDVHQPHMVYTGS--DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS----DSNTLLTGSYDEYLRVW  223 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~iw  223 (331)
                      .++..++|.- +...+++.-  .+|.+++=|.+      ++.    .-..|..+.|.|.    .+.+||+- ....|.+|
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds~------viG----qFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVW   87 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDSK------VIG----QFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVW   87 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCCcc------Eee----ccceeeeeeecCcccCCCCceEEEe-ccceEEEE
Confidence            4688999972 434444432  23333322211      111    2345899999984    23455555 46789999


Q ss_pred             EecCCC----CCceeeeeecCC----ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107          224 DVRSIS----KPVNETSVCLGG----GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR  295 (331)
Q Consensus       224 d~~~~~----~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  295 (331)
                      -+....    +.+....-....    -...+.|+|.. ..+.+-...+.-.+..+..+..+...-++ -.+.|.+.+|.+
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~  165 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTK  165 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecC
Confidence            986321    111110111111    22457899985 45555455555456666665455555554 467899999999


Q ss_pred             CCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          296 GRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       296 ~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ||.        +++++.| ..=.-++||-...
T Consensus       166 DG~--------RLVVAvG-SsLHSyiWd~~qK  188 (671)
T PF15390_consen  166 DGQ--------RLVVAVG-SSLHSYIWDSAQK  188 (671)
T ss_pred             cCC--------EEEEEeC-CeEEEEEecCchh
Confidence            997        7777777 6667789986544

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.37  E-value=0.084  Score=49.69  Aligned_cols=142  Identities=11%  Similarity=-0.025  Sum_probs=89.6

Q ss_pred             ccEEEEEEcCCCCeEEEEec--CCeEEEEEcccccee---eeeeee------cccceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107          106 SMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLE---VLQQWK------AHEFELWATSFDVHQPHMVYTGSDDCKF  174 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~---~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i  174 (331)
                      .++..+...+|+...++...  +-.|..||+++-...   ....+.      ....-..++.|+|.=....+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            44555666677766444433  447889999862110   011111      1223456788998656677888889999


Q ss_pred             EEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC-CCceeeeeecCCceEEEEECCCC
Q 020107          175 SGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS-KPVNETSVCLGGGVWRIKHHPFI  252 (331)
Q Consensus       175 ~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~  252 (331)
                      ++..+..... ...+.    -....++++|+| .|..++.|-..|++.-|...-.. ..+..........|.+|+|-...
T Consensus       181 ~V~~~~~~~~~v~s~p----~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFP----VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhhhhhcccC----cccceeeEEecc-ccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecce
Confidence            9988764322 22222    466789999999 99999999999999888664321 11111001125789999998773

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.33  E-value=0.71  Score=41.10  Aligned_cols=156  Identities=13%  Similarity=0.099  Sum_probs=81.5

Q ss_pred             EEcCCCCeEEEEecCC------------------eEEEEEccccceeeeeeeecccc---------eeEEEeeCCCCC--
Q 020107          112 EWNPSATSITVGLSDG------------------SVSIVSVVESQLEVLQQWKAHEF---------ELWATSFDVHQP--  162 (331)
Q Consensus       112 ~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~--  162 (331)
                      .+.+.+..+++++.++                  .|.-+|.++++..=......+..         .+..+.  ..++  
T Consensus       223 a~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~--~~~g~~  300 (488)
T cd00216         223 TYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK--PKDGKP  300 (488)
T ss_pred             eEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc--ccCCCe
Confidence            4445567788887665                  78889998886522222221210         011111  0122  


Q ss_pred             -cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE------------------ecCCeEEEE
Q 020107          163 -HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG------------------SYDEYLRVW  223 (331)
Q Consensus       163 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~------------------~~d~~i~iw  223 (331)
                       ..++.++.+|.+...|.++++.+......      ...+...|   ..++.+                  ..+|.+.-.
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al  371 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL  371 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence             36788889999999999999866554430      01122222   222221                  235778888


Q ss_pred             EecCCCCCceeeeeecC------Cce--EEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec
Q 020107          224 DVRSISKPVNETSVCLG------GGV--WRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK  283 (331)
Q Consensus       224 d~~~~~~~~~~~~~~~~------~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (331)
                      |+.+++.........+.      .+.  ..+...  + +.+++++.++.+..++.  .+++.+-+++-
T Consensus       372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~--g-~~v~~g~~dG~l~ald~--~tG~~lW~~~~  434 (488)
T cd00216         372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATA--G-NLVFAGAADGYFRAFDA--TTGKELWKFRT  434 (488)
T ss_pred             eCCCCcEeeEeeCCccccccccCCcccCcceEec--C-CeEEEECCCCeEEEEEC--CCCceeeEEEC
Confidence            88876433332111000      111  112222  2 56666667777555554  44777776653

The alignment model contains an 8-bladed beta-propeller.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.33  E-value=0.16  Score=44.49  Aligned_cols=152  Identities=11%  Similarity=0.025  Sum_probs=88.8

Q ss_pred             ccEEEEEEcCCCCeEE-EEe--cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC---CcEEEEEcCCCeEEEEEc
Q 020107          106 SMCLCLEWNPSATSIT-VGL--SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ---PHMVYTGSDDCKFSGWDI  179 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~-~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~i~d~  179 (331)
                      .++..++|. ||+.++ +.-  .+|.+++=|.     ..+.    .-..|..+.|.|..   ..-+++......|.+|.+
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-----~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-----KVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc-----cEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            467788886 555533 322  2444433221     1122    33458899999841   223445556789999998


Q ss_pred             cCC-----Cceeeeec--ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC
Q 020107          180 RES-----PFKLAFQN--SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI  252 (331)
Q Consensus       180 ~~~-----~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  252 (331)
                      ...     +.......  .....--...+.|+| ....|++-.....-.+++.+.....+.. .....+.|.+.+|.+||
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVka-Di~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKA-DIKTSGLIHCACWTKDG  167 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEE-eccCCceEEEEEecCcC
Confidence            621     11111110  000111234577999 8888887776666667788775444443 35667889999999999


Q ss_pred             CCeEEEEEecCcEEEEE
Q 020107          253 PGLVLAACMHNGFAVVK  269 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~~~  269 (331)
                      ..++++.|+.=..++|+
T Consensus       168 ~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             CEEEEEeCCeEEEEEec
Confidence            77777776643333444

>PHA03098 kelch-like protein; Provisional

Probab=96.31  E-value=0.33  Score=43.79  Aligned_cols=105  Identities=10%  Similarity=0.138  Sum_probs=55.3

Q ss_pred             CCCeEEEEecCC------eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-----CeEEEEEccCCCc
Q 020107          116 SATSITVGLSDG------SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-----CKFSGWDIRESPF  184 (331)
Q Consensus       116 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  184 (331)
                      ++..++.|+.++      .+..||..+.++..+..+.........+.+   ++.+++.|+.+     ..+..||..+.+-
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            445566665432      577888888776444333322222222222   55777888765     3577888876543


Q ss_pred             eeeeecccCCCcceEEEEEecCCCCEEEEEecC------CeEEEEEecC
Q 020107          185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD------EYLRVWDVRS  227 (331)
Q Consensus       185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~  227 (331)
                      ...-.. +..... .+++..  ++.+.+.||.+      ..+..||..+
T Consensus       371 ~~~~~l-p~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        371 REEPPL-IFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             eeCCCc-CcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCC
Confidence            221111 101111 122222  56777777732      3578888875

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.22  E-value=0.029  Score=30.39  Aligned_cols=32  Identities=9%  Similarity=0.036  Sum_probs=27.2

Q ss_pred             ceeEEEeeCCCCC--cEEEEEcCCCeEEEEEccC
Q 020107          150 FELWATSFDVHQP--HMVYTGSDDCKFSGWDIRE  181 (331)
Q Consensus       150 ~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~  181 (331)
                      +.+.+++|+|...  .+|+.+-..+.|.|+|+|+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3588999998555  6888888899999999995

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.22  E-value=0.35  Score=43.67  Aligned_cols=112  Identities=14%  Similarity=0.092  Sum_probs=70.1

Q ss_pred             eEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEEC--CCCCCeEEEEEecCcEEEEEEcCc--
Q 020107          198 VCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHH--PFIPGLVLAACMHNGFAVVKVGGE--  273 (331)
Q Consensus       198 v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--  273 (331)
                      +.-+.-+. -++..++.+....+.|||.+...-...+ .....+.|..+.|.  |++ +.+++.|....+.++.-...  
T Consensus        32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~-~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEE-SFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEee-eecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhh
Confidence            33344444 3444444445568999999986422222 22447889999987  455 67888899888777654211  


Q ss_pred             -----ccceeEEe--ecCC-cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          274 -----KAEVLETY--AKHG-SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       274 -----~~~~~~~~--~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                           ....+..+  ..|+ .+|.+..|.++|          .++.++  ++.+.|++-
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G----------~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG----------TLVVGS--GNQLFVFDK  155 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCC----------eEEEEe--CCEEEEECC
Confidence                 12233333  3444 589999999998          455554  678888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.15  E-value=0.74  Score=39.55  Aligned_cols=91  Identities=8%  Similarity=-0.047  Sum_probs=53.6

Q ss_pred             EEEEcCCCCeEEEEecCCeEEE---EEccc-c--ceeeeee----eecc-cceeEEEeeCCC----------CCcEEEEE
Q 020107          110 CLEWNPSATSITVGLSDGSVSI---VSVVE-S--QLEVLQQ----WKAH-EFELWATSFDVH----------QPHMVYTG  168 (331)
Q Consensus       110 ~~~~~~~~~~l~~~~~dg~i~i---~d~~~-~--~~~~~~~----~~~~-~~~v~~~~~~~~----------~~~~l~~~  168 (331)
                      .++.+|+++.|+.+..+..+.+   |+... +  .......    +... ...|+++.|-|-          +...++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4566777777777766655544   43311 1  0011111    1111 146776666542          34689999


Q ss_pred             cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe
Q 020107          169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI  204 (331)
Q Consensus       169 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  204 (331)
                      ..+|.|++|... +..+..-..   |..+|..|...
T Consensus        86 ~ssG~vrfyte~-G~LL~~Q~~---h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYTEN-GVLLLSQLL---HEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEecc-chHHHHHhc---CccceEEEEec
Confidence            999999999974 544444444   78888888765

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.53  Score=37.72  Aligned_cols=252  Identities=15%  Similarity=0.152  Sum_probs=136.8

Q ss_pred             CCCcEEEEeccCcccceEEeEeeec-CcEeEEEEcCCCCCCCCeEEEEc-CCccEEEecCCCccc---------CccEEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDT-AGIFDIKWSPVGGNAGPFLAQAD-ADGGLLRDITGEKIS---------SSMCLC  110 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~-~dg~iiw~~~~~~~~---------~~~v~~  110 (331)
                      .+.-++|.|+.+...+...- .... +--.++..+      +++..++. .||.++.|+.....+         ......
T Consensus       104 ~ssGL~IvDIS~P~sP~~~~-~lnt~gyaygv~vs------Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~  176 (370)
T COG5276         104 WSSGLRIVDISTPDSPTLIG-FLNTDGYAYGVYVS------GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHD  176 (370)
T ss_pred             CCCceEEEeccCCCCcceec-cccCCceEEEEEec------CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCcee
Confidence            46679999998876443322 2222 333444444      44777777 677777777765432         111123


Q ss_pred             EEEcCCCCeEEEEecCCeEEEEEccccceee-eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee
Q 020107          111 LEWNPSATSITVGLSDGSVSIVSVVESQLEV-LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ  189 (331)
Q Consensus       111 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  189 (331)
                      ++.  .|++-..+..|+-+.+.|+....... +.... -...+.++..++ +..+++.  .+--+.+-|....+....+.
T Consensus       177 v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsd-nr~y~vv--y~egvlivd~s~~ssp~~~g  250 (370)
T COG5276         177 VAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSD-NRAYLVV--YDEGVLIVDVSGPSSPTVFG  250 (370)
T ss_pred             EEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecC-CeeEEEE--cccceEEEecCCCCCceEee
Confidence            333  46777888889999999998754221 22222 233677888775 4334433  34557788888776555554


Q ss_pred             cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC-ceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107          190 NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG-GVWRIKHHPFIPGLVLAACMHNGFAVV  268 (331)
Q Consensus       190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~  268 (331)
                      ...  ...+.++.--|..+++......+.-+-+-|+.+...|...-.....+ .-..+..+.   ..+..+-.+ ...++
T Consensus       251 sye--t~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~---~y~yiadkn-~g~vV  324 (370)
T COG5276         251 SYE--TSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYG---NYNYIADKN-TGAVV  324 (370)
T ss_pred             ccc--cCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEec---CeeEeccCC-ceEEE
Confidence            421  22233332112256777777778888888888765554431111222 333444443   222233222 33355


Q ss_pred             EEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          269 KVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       269 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                      +..+.  +......+....+.+.+.+-+.         +.+.+.. .++.+.+|+.
T Consensus       325 ~~s~~--s~m~~~~g~~ti~~s~~v~~~~---------q~~y~~d-~~~gl~i~~~  368 (370)
T COG5276         325 DASPP--SMMDKRPGRPTIGQSCDVSVDT---------QIIYSTD-YNGGLSIIEY  368 (370)
T ss_pred             eCCCh--hhcccccCcceEeeecceEEEe---------eEEEEee-cCCCEEEEEe
Confidence            55442  2222222223334444555554         5677777 8899999875

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.11  Score=48.90  Aligned_cols=140  Identities=11%  Similarity=-0.016  Sum_probs=82.8

Q ss_pred             eeEEEeeCCCCCcE--EEEEcCCCeEEEEEccCCCcee-----eeec---ccCCCcceEEEEEecCCCCEEEEEecCCeE
Q 020107          151 ELWATSFDVHQPHM--VYTGSDDCKFSGWDIRESPFKL-----AFQN---SKIHKMGVCCIASIPSDSNTLLTGSYDEYL  220 (331)
Q Consensus       151 ~v~~~~~~~~~~~~--l~~~~~dg~i~i~d~~~~~~~~-----~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  220 (331)
                      ++..+...+ +...  ++..+.+-.|..||+++-....     .+..   .........++.|+|.-....+.+..|+.|
T Consensus       102 pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            344444444 4332  3334445578899998643211     1111   000233457888998556678888899999


Q ss_pred             EEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec----CCcceeeeeecCC
Q 020107          221 RVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK----HGSLAYGADWQRG  296 (331)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~  296 (331)
                      ++..+.........  .......++++|+|.| ..++++-..+.+..|...   .+....+.+    ....|.++.|...
T Consensus       181 ~V~~~~~~~~~v~s--~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~---leik~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTS--FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPS---LEIKSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             hhhhhhhhhhhhcc--cCcccceeeEEecccc-ceeeEecCCCeEEEeecc---cceeecccCCCcCCCcceeEEEEecc
Confidence            99888764333333  4667789999999997 455555555554333332   232222221    1467999999887


Q ss_pred             C
Q 020107          297 R  297 (331)
Q Consensus       297 ~  297 (331)
                      .
T Consensus       255 ~  255 (1405)
T KOG3630|consen  255 Q  255 (1405)
T ss_pred             e
Confidence            6

>PHA03098 kelch-like protein; Provisional

Probab=96.04  E-value=0.48  Score=42.75  Aligned_cols=105  Identities=7%  Similarity=0.082  Sum_probs=54.4

Q ss_pred             CCCeEEEEecC------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC--------CeEEEEEccC
Q 020107          116 SATSITVGLSD------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--------CKFSGWDIRE  181 (331)
Q Consensus       116 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~  181 (331)
                      +++..+.|+.+      ..+..||+.++++..+..+....... +++..  ++.+++.|+.+        ..+.+||..+
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEEE--CCEEEEECCccCCCCCcccceEEEecCCC
Confidence            45666666631      46888999887775444332211111 22222  45677777643        2388899887


Q ss_pred             CCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecC
Q 020107          182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRS  227 (331)
Q Consensus       182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~  227 (331)
                      .+-...-.. +........+.+   ++.+++.|+.+     ..+.+||..+
T Consensus       466 ~~W~~~~~~-~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        466 NKWTELSSL-NFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CceeeCCCC-CcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCC
Confidence            653222111 101111122222   56677777754     3577777665

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.00  E-value=0.72  Score=38.05  Aligned_cols=195  Identities=9%  Similarity=-0.025  Sum_probs=98.7

Q ss_pred             EEcCCCCeEE-EEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec
Q 020107          112 EWNPSATSIT-VGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN  190 (331)
Q Consensus       112 ~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  190 (331)
                      .|.++...|+ +--..+.|.-|+..+++.   ..+. ....+.++..- +.+..|+++.  ..+.+++..++.....+..
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~---~~~~-~p~~~~~~~~~-d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK---RVFP-SPGGFSSGALI-DAGGRLIACE--HGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce---EEEE-CCCCcccceee-cCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence            4666666444 444578888898876643   2333 22233444433 2445555554  3456677655543222222


Q ss_pred             -ccC-CCcceEEEEEecCCCCEEEEEec------C---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107          191 -SKI-HKMGVCCIASIPSDSNTLLTGSY------D---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       191 -~~~-~~~~v~~~~~~~~~~~~l~~~~~------d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  259 (331)
                       ... .....+.+...| ++.+.++...      +   ..=.+|-+..... .......+-..-+.|+|||+++.++++=
T Consensus       104 ~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-~~~l~~~~~~~~NGla~SpDg~tly~aD  181 (307)
T COG3386         104 PEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-VVRLLDDDLTIPNGLAFSPDGKTLYVAD  181 (307)
T ss_pred             ccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCC-EEEeecCcEEecCceEECCCCCEEEEEe
Confidence             111 124456777888 6665554333      0   0113443332112 2221233344567899999985455454


Q ss_pred             EecCcEEEEEEcCcc----cc-eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC-eEEEEcCC
Q 020107          260 CMHNGFAVVKVGGEK----AE-VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR-LLRIWMPE  325 (331)
Q Consensus       260 ~~~~~~~~~~~~~~~----~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~-~i~iW~~~  325 (331)
                      +..+.+..+.+....    .+ ....+....+..-+++...++         .+.+++. .+| .|.+|+.+
T Consensus       182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG---------~lw~~a~-~~g~~v~~~~pd  243 (307)
T COG3386         182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG---------NLWVAAV-WGGGRVVRFNPD  243 (307)
T ss_pred             CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC---------CEEEecc-cCCceEEEECCC
Confidence            444665555554211    11 112222334555566666666         4554444 344 99999988

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.96  E-value=0.25  Score=44.56  Aligned_cols=106  Identities=9%  Similarity=0.011  Sum_probs=68.8

Q ss_pred             CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC-CCcEEEEEcCCCeEEEEEccC-----C----Cce
Q 020107          116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH-QPHMVYTGSDDCKFSGWDIRE-----S----PFK  185 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-----~----~~~  185 (331)
                      -++..++-+...++.|||.+.+..+....+ .....|.++.|... +++.+++.+..+.|.+|--..     .    ..+
T Consensus        40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i  118 (631)
T PF12234_consen   40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI  118 (631)
T ss_pred             cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence            344444444456899999998876555556 35668999999742 567788888889998885421     1    112


Q ss_pred             eeeecccCCC-cceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107          186 LAFQNSKIHK-MGVCCIASIPSDSNTLLTGSYDEYLRVWDVR  226 (331)
Q Consensus       186 ~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~  226 (331)
                      ..+.. ..++ .+|....|.+ +|.+++..  ++.+.|+|-.
T Consensus       119 ~~i~i-~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  119 RKIDI-SSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             EEEEe-ecCCCCCccceeEec-CCeEEEEe--CCEEEEECCC
Confidence            22322 1233 6789999998 77655544  3678888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=95.92  E-value=1.6  Score=41.35  Aligned_cols=170  Identities=16%  Similarity=0.102  Sum_probs=97.1

Q ss_pred             EEecCCCcccCccEEEEEEc---C----CCCeEEEEecCCeEEEEEccccc-------------eeeeeeeec---ccce
Q 020107           95 LRDITGEKISSSMCLCLEWN---P----SATSITVGLSDGSVSIVSVVESQ-------------LEVLQQWKA---HEFE  151 (331)
Q Consensus        95 iw~~~~~~~~~~~v~~~~~~---~----~~~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~---~~~~  151 (331)
                      .|.+..    ..+|..|+|.   .    ...+|++- ....+.|+...-.+             ..++..+..   ...+
T Consensus        73 ~w~i~~----~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~  147 (765)
T PF10214_consen   73 AWSIDD----GSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFP  147 (765)
T ss_pred             eeEcCC----CCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCc
Confidence            555443    3677888887   2    12344443 44566666621111             122333331   2346


Q ss_pred             eEEEeeCCCCCcEEEEEcCCCeEEEEEccCC--CceeeeecccCC----------CcceEEEEEecCCCCEEEEEecCCe
Q 020107          152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRES--PFKLAFQNSKIH----------KMGVCCIASIPSDSNTLLTGSYDEY  219 (331)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~d~~  219 (331)
                      ..+++|+|.+...||.....|...|||+...  .....+.....+          .+.-..|.|.+ +.+.|++++. ..
T Consensus       148 ~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r-~~  225 (765)
T PF10214_consen  148 HADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR-SK  225 (765)
T ss_pred             cceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-Cc
Confidence            7799999988899999999999999999211  111111111111          12334788887 7777777765 56


Q ss_pred             EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          220 LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      +.++|+++...............|..+.-+|.....++.-.+ ..+..+++..
T Consensus       226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~  277 (765)
T PF10214_consen  226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS  277 (765)
T ss_pred             eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence            899999875331111124455678899988874444333322 4444444444

These proteins are found in fungi.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=1  Score=38.64  Aligned_cols=193  Identities=15%  Similarity=0.119  Sum_probs=115.4

Q ss_pred             EeEEEEcCCCCCCCCe-EEEEcCCccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEec---CCeEEEEEccccc
Q 020107           69 IFDIKWSPVGGNAGPF-LAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQ  138 (331)
Q Consensus        69 v~~~~~~~~~~~~~~~-l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~  138 (331)
                      -..++.++.    +.. .+....+..+ +-+..+....     ......++++++++.+.++..   ++.+.+.|..+++
T Consensus        76 p~~i~v~~~----~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          76 PAGVAVNPA----GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             ccceeeCCC----CCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence            456777877    554 4444444555 6664443321     224567899999988877766   6888888888775


Q ss_pred             eeeeeeeecccceeEEEeeCCCCCc-EEEEEcCCCeEEEEEccCCCcee-eeecccCCCcceEEEEEecCCCCEEEEEec
Q 020107          139 LEVLQQWKAHEFELWATSFDVHQPH-MVYTGSDDCKFSGWDIRESPFKL-AFQNSKIHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                      .  .........+ ..+++.| +++ .+++-..++.|.+.|........ .-...-.-......+.+.| ++..+.+...
T Consensus       152 ~--~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~  226 (381)
T COG3391         152 V--TATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVAND  226 (381)
T ss_pred             E--EEEEecCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEec
Confidence            4  3333333334 8899999 555 55555588999999977654332 1000001233456788899 7776555543


Q ss_pred             C---CeEEEEEecCCCCCceeeeeecCC-ceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          217 D---EYLRVWDVRSISKPVNETSVCLGG-GVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       217 d---~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      .   +.+...|..+..  +......-.. ....+..+|++....++....+.+.+.+...
T Consensus       227 ~~~~~~v~~id~~~~~--v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         227 GSGSNNVLKIDTATGN--VTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             cCCCceEEEEeCCCce--EEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            3   588888887742  2221112222 4667899999854444445546655555444

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.83  E-value=0.87  Score=37.66  Aligned_cols=147  Identities=13%  Similarity=0.075  Sum_probs=83.1

Q ss_pred             CeEEEEcCCccE-EEecC-CCccc----------CccEE-EEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc-
Q 020107           83 PFLAQADADGGL-LRDIT-GEKIS----------SSMCL-CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH-  148 (331)
Q Consensus        83 ~~l~~~~~dg~i-iw~~~-~~~~~----------~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-  148 (331)
                      .-+.+-+.||.+ ...+. .++..          ..++. .-++...+..++--+.+|.|+-.|+.....+....+..- 
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            367788888888 33332 11111          11111 112333444555577889999988887654444443211 


Q ss_pred             ---------cceeEEEeeCCCCCcEEEEEc-------CCC--eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107          149 ---------EFELWATSFDVHQPHMVYTGS-------DDC--KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       149 ---------~~~v~~~~~~~~~~~~l~~~~-------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                               .+.-.-+++++..+.+++.-.       .|+  .|-++|+.+++.+..+..    ..++.+|..+.++..+
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~  303 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPL  303 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-E
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcE
Confidence                     122345677763434433322       122  567778888887777776    4567899999855556


Q ss_pred             EEEE-ecCCeEEEEEecCCCCCcee
Q 020107          211 LLTG-SYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       211 l~~~-~~d~~i~iwd~~~~~~~~~~  234 (331)
                      |++. ..++.+.+||..++ +.+..
T Consensus       304 L~~~~~~~~~l~v~D~~tG-k~~~~  327 (342)
T PF06433_consen  304 LYALSAGDGTLDVYDAATG-KLVRS  327 (342)
T ss_dssp             EEEEETTTTEEEEEETTT---EEEE
T ss_pred             EEEEcCCCCeEEEEeCcCC-cEEee
Confidence            6554 46899999999996 44444

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.82  E-value=0.042  Score=29.80  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=26.7

Q ss_pred             cceEEEEEecCCC--CEEEEEecCCeEEEEEecC
Q 020107          196 MGVCCIASIPSDS--NTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       196 ~~v~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~  227 (331)
                      +.|+++.|+|..+  .+|+..-.-+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3689999998444  6888888889999999995

It contains a characteristic DLL sequence motif.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.69  E-value=0.85  Score=36.48  Aligned_cols=222  Identities=16%  Similarity=0.125  Sum_probs=116.0

Q ss_pred             eEEEEcCCccEEEecCCCcccCccEEEEEEcCCCCe-EEEEecCCe-EEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107           84 FLAQADADGGLLRDITGEKISSSMCLCLEWNPSATS-ITVGLSDGS-VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        84 ~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (331)
                      ..++.+.+|+++..+.-    ......+.|+|..+. ++.+-.-|+ ..++|....+......-.....-.-.-.|+| +
T Consensus        50 g~a~~~eaGk~v~~~~l----paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-d  124 (366)
T COG3490          50 GAATLSEAGKIVFATAL----PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-D  124 (366)
T ss_pred             eEEEEccCCceeeeeec----ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-C
Confidence            46667777777433322    122346777776544 555555443 4678877654321111111111111236888 7


Q ss_pred             CcEEEEEcCC-----CeEEEEEccCCC-ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEE--------EecC
Q 020107          162 PHMVYTGSDD-----CKFSGWDIRESP-FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVW--------DVRS  227 (331)
Q Consensus       162 ~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw--------d~~~  227 (331)
                      +.+|++.-.|     |.|-|||.+.+- .+-++.   .|.-....+.+.+ |+..++...  |-|..-        ++.+
T Consensus       125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~---t~GiGpHev~lm~-DGrtlvvan--GGIethpdfgR~~lNlds  198 (366)
T COG3490         125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS---THGIGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTELNLDS  198 (366)
T ss_pred             CcEEEeecCCCCCCCceEEEEecccccceecccc---cCCcCcceeEEec-CCcEEEEeC--CceecccccCccccchhh
Confidence            8888776543     789999998542 133344   3888888999999 898887763  334333        2222


Q ss_pred             CCCCceeeee---------------ecCCceEEEEECCCCCCeEEEEEecCcE-----EEEEEcCcccceeEEeec----
Q 020107          228 ISKPVNETSV---------------CLGGGVWRIKHHPFIPGLVLAACMHNGF-----AVVKVGGEKAEVLETYAK----  283 (331)
Q Consensus       228 ~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----  283 (331)
                      + +|...++.               .+.-.|..+...++  +.+..+|...+-     -++-.... ++.+..+.-    
T Consensus       199 M-ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d--gtvwfgcQy~G~~~d~ppLvg~~~~-g~~l~~~~~pee~  274 (366)
T COG3490         199 M-EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD--GTVWFGCQYRGPRNDLPPLVGHFRK-GEPLEFLDLPEEQ  274 (366)
T ss_pred             c-CccEEEEeccccchhhhccCchhhhhcceeeeeeCCC--CcEEEEEEeeCCCccCCcceeeccC-CCcCcccCCCHHH
Confidence            2 22111111               12234666777777  555555543220     01111111 222222221    


Q ss_pred             ---CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          284 ---HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       284 ---h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                         -...|-+++.+.+.         .+++..+-..+...+||.+++..
T Consensus       275 ~~~~anYigsiA~n~~~---------glV~lTSP~GN~~vi~da~tG~v  314 (366)
T COG3490         275 TAAFANYIGSIAANRRD---------GLVALTSPRGNRAVIWDAATGAV  314 (366)
T ss_pred             HHHHHhhhhheeecccC---------CeEEEecCCCCeEEEEEcCCCcE
Confidence               12245567776655         34444442667888999988754

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.63  E-value=0.72  Score=35.30  Aligned_cols=143  Identities=10%  Similarity=0.037  Sum_probs=84.8

Q ss_pred             CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC---C---eEEEE---EccCC--Cce-
Q 020107          118 TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD---C---KFSGW---DIRES--PFK-  185 (331)
Q Consensus       118 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g---~i~i~---d~~~~--~~~-  185 (331)
                      +.|+.+...+.|.+|++.+...++...+..- +.|..+.++. .++++++--.+   .   .+|+|   +....  +.. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            5565657778899999996666667777643 6789999997 78999886432   2   55654   22210  111 


Q ss_pred             --------------------eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCc---eee-------
Q 020107          186 --------------------LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPV---NET-------  235 (331)
Q Consensus       186 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~-------  235 (331)
                                          ..+.. + -..++.+++..|..|++++.+  ++.+.+|.+.......   ...       
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiEl-P-l~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~  182 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIEL-P-LSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLI  182 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEe-c-CCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEechhhhh
Confidence                                11111 1 245678899999777766644  5779999886532101   110       


Q ss_pred             eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                      ....+-.+..+++..+    +++..++..++++++
T Consensus       183 ~~~~~~~p~~v~ic~~----yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  183 DHIDNFKPTQVAICEG----YIAVMSDLEVLVLKL  213 (215)
T ss_pred             heecCceEEEEEEEee----EEEEecCCEEEEEEE
Confidence            0111223566676653    445556666666665

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.63  E-value=1.6  Score=39.25  Aligned_cols=55  Identities=15%  Similarity=0.158  Sum_probs=37.0

Q ss_pred             eEEEEEccCCCceeeeecccCCCc-------ceEEEEEecCCCC---EEEEEecCCeEEEEEecCCC
Q 020107          173 KFSGWDIRESPFKLAFQNSKIHKM-------GVCCIASIPSDSN---TLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       173 ~i~i~d~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~  229 (331)
                      .|.-.|+++++..-.++..+ |..       ...-+.+.. ++.   .++.+.++|.+.+.|.++++
T Consensus       272 s~vAld~~TG~~~W~~Q~~~-~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTP-HDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             eEEEEccccCCEEEeeeCCC-CCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCc
Confidence            67778999998877777622 321       111222222 454   78899999999999999864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.52  E-value=0.0046  Score=52.33  Aligned_cols=144  Identities=17%  Similarity=0.191  Sum_probs=96.8

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----cCccEEEEEEcCCCCeEEE-EecCCeEEEEEccccceee
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----SSSMCLCLEWNPSATSITV-GLSDGSVSIVSVVESQLEV  141 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~  141 (331)
                      .-....|-|.    +.-++.++.+-.+ .+|-.....    .+.....++|..++..+++ +-..+.+.+||+.+..-+.
T Consensus        36 ~pi~~~w~~e----~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq  111 (615)
T KOG2247|consen   36 GPIIHRWRPE----GHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ  111 (615)
T ss_pred             ccceeeEecC----CCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence            3445667887    5557777777776 565544332    2455667889888877544 4558999999998743211


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEE
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLR  221 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  221 (331)
                      + .+.+ ...-.-+.|++ ....++.+...|.+.|++..+.+.......   |...++++++.+  .++.+.++.|..+.
T Consensus       112 L-E~gg-~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gk---h~RRgtq~av~l--Ed~vil~dcd~~L~  183 (615)
T KOG2247|consen  112 L-ESGG-TSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGK---HQRRGTQIAVTL--EDYVILCDCDNTLS  183 (615)
T ss_pred             H-hccC-cchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcc---cccceeEEEecc--cceeeecCcHHHHH
Confidence            1 1211 11122278887 777888888999999999988765555544   889999999998  55677777776554


Q ss_pred             EE
Q 020107          222 VW  223 (331)
Q Consensus       222 iw  223 (331)
                      +-
T Consensus       184 v~  185 (615)
T KOG2247|consen  184 VT  185 (615)
T ss_pred             Hh
Confidence            43

>PHA02790 Kelch-like protein; Provisional

Probab=95.48  E-value=1.6  Score=38.82  Aligned_cols=187  Identities=4%  Similarity=-0.113  Sum_probs=89.0

Q ss_pred             CCCeEEEEecC-----CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC--CeEEEEEccCCCceeee
Q 020107          116 SATSITVGLSD-----GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--CKFSGWDIRESPFKLAF  188 (331)
Q Consensus       116 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~  188 (331)
                      ++..+++|+.+     ..+..||..++++..+..+.........+.   .++.+.+.|+.+  ..+..||..+.+-...-
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~---~~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP---ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE---ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            34445666643     256778888876655444432222222222   256777777754  35778887655322111


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecCC---eEEEEEecCCCCCceeeeeecCCc--eEEEEECCCCCCeEEEEEecC
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVWDVRSISKPVNETSVCLGGG--VWRIKHHPFIPGLVLAACMHN  263 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~  263 (331)
                      .. +........+..   ++.+.+.||.++   .+..||.++.  .... ......+  -.+++- -+  +.+.+.|+  
T Consensus       348 ~l-~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~--~W~~-~~~m~~~r~~~~~~~-~~--~~IYv~GG--  415 (480)
T PHA02790        348 SL-LKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHD--QWQF-GPSTYYPHYKSCALV-FG--RRLFLVGR--  415 (480)
T ss_pred             CC-CCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCC--EEEe-CCCCCCccccceEEE-EC--CEEEEECC--
Confidence            11 101111222222   677888887654   4667887652  1111 0000001  011221 12  33444432  


Q ss_pred             cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC-----CeEEEEcCCCccc
Q 020107          264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD-----RLLRIWMPESDCL  329 (331)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d-----~~i~iW~~~~~~~  329 (331)
                      ...+++........+..+....... +++.. ++         ++.+.|| .+     ..+..||++++..
T Consensus       416 ~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v~-~~---------~IYviGG-~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        416 NAEFYCESSNTWTLIDDPIYPRDNP-ELIIV-DN---------KLLLIGG-FYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             ceEEecCCCCcEeEcCCCCCCcccc-EEEEE-CC---------EEEEECC-cCCCcccceEEEEECCCCeE
Confidence            2346666544444443332212222 23332 33         5788887 54     4688999887754

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.12  E-value=1.8  Score=36.65  Aligned_cols=183  Identities=14%  Similarity=0.110  Sum_probs=91.0

Q ss_pred             EEcCCCCCCCCeEEEEcCCccE---EEecCCCccc------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeee
Q 020107           73 KWSPVGGNAGPFLAQADADGGL---LRDITGEKIS------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ  143 (331)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~dg~i---iw~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  143 (331)
                      +|.+++   .++|..+..+|.-   +-++.+.+..      ........++|+++.++-......|+-.|+++.+...+.
T Consensus        42 ~ft~dG---~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   42 CFTDDG---RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             -B-TTS----EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CcCCCC---CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence            466662   3566666667766   5566655431      111224556788888766656678888999987654555


Q ss_pred             eeecccceeEEEeeCC-CCCcEEEEEc----------------------CCCeEEEEEccCCCceeeeecccCCCcceEE
Q 020107          144 QWKAHEFELWATSFDV-HQPHMVYTGS----------------------DDCKFSGWDIRESPFKLAFQNSKIHKMGVCC  200 (331)
Q Consensus       144 ~~~~~~~~v~~~~~~~-~~~~~l~~~~----------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  200 (331)
                      .+.  ...+-...|.. .+...++-.-                      -...|.-.|+.+++...++..    ...+..
T Consensus       119 ~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~----~~wlgH  192 (386)
T PF14583_consen  119 EVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED----TDWLGH  192 (386)
T ss_dssp             E----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE----SS-EEE
T ss_pred             ECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec----CccccC
Confidence            443  33343345532 2334332221                      124566678888776555554    778899


Q ss_pred             EEEecCCCCEEEEEecC---C-eEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCeEEEEEecCc
Q 020107          201 IASIPSDSNTLLTGSYD---E-YLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGLVLAACMHNG  264 (331)
Q Consensus       201 ~~~~~~~~~~l~~~~~d---~-~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~  264 (331)
                      +.|+|.++.+|+-|-+.   . .-|||-++.......... ......+..=-|.|+|..++..+...++
T Consensus       193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~  261 (386)
T PF14583_consen  193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGG  261 (386)
T ss_dssp             EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred             cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCC
Confidence            99999778777777542   2 136777765332222111 1223345556788988655555443333

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.09  E-value=2  Score=37.01  Aligned_cols=107  Identities=11%  Similarity=0.064  Sum_probs=61.6

Q ss_pred             eeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCc------c-------cCccEEEEEEcCCCCeEEEEecCCeE
Q 020107           63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEK------I-------SSSMCLCLEWNPSATSITVGLSDGSV  129 (331)
Q Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~------~-------~~~~v~~~~~~~~~~~l~~~~~dg~i  129 (331)
                      ......+.++.|.++    +.+++++ ..|.+++....++      .       ....+.++.|.+++..+++ +..|.+
T Consensus       277 ~~~~~~l~~v~~~~d----g~l~l~g-~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v  350 (398)
T PLN00033        277 RASARRIQNMGWRAD----GGLWLLT-RGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGIL  350 (398)
T ss_pred             CCCccceeeeeEcCC----CCEEEEe-CCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcE
Confidence            334556899999988    6666655 5676744433321      1       1234788999877665554 566877


Q ss_pred             EEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107          130 SIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW  177 (331)
Q Consensus       130 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (331)
                      ....-....++....-..-....+.+.|.+ +++.++ .+.+|.|.-|
T Consensus       351 ~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g~~-~G~~G~il~~  396 (398)
T PLN00033        351 LRSTDGGKSWKRDKGADNIAANLYSVKFFD-DKKGFV-LGNDGVLLRY  396 (398)
T ss_pred             EEeCCCCcceeEccccCCCCcceeEEEEcC-CCceEE-EeCCcEEEEe
Confidence            665433333322221122245678999875 444444 4557877554

>PRK13684 Ycf48-like protein; Provisional

Probab=95.05  E-value=1.8  Score=36.38  Aligned_cols=153  Identities=12%  Similarity=0.046  Sum_probs=82.3

Q ss_pred             cceeEEEeeCCCCCcEEEEEcCCCeEEE-EEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          149 EFELWATSFDVHQPHMVYTGSDDCKFSG-WDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      ...+..+.+.| ++.+++++. .|.+.. +|-. ++.-....  ..-...++++.+.| ++..++++ ..|.+++=....
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~--~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~  244 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEPG-QTAWTPHQ--RNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDD  244 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcCCC-CCeEEEee--CCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCC
Confidence            45688899987 655555544 565443 2211 12111111  12456789999998 77776665 567664322222


Q ss_pred             CCCCceeeeee---cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee---cCCcceeeeeecCCCCccc
Q 020107          228 ISKPVNETSVC---LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLE  301 (331)
Q Consensus       228 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~  301 (331)
                      + ........+   ....+..+.+.|+  +.+++++..+.  ++.-.+. ++.-....   .-....+.+.|..++    
T Consensus       245 G-~sW~~~~~~~~~~~~~l~~v~~~~~--~~~~~~G~~G~--v~~S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~----  314 (334)
T PRK13684        245 L-ESWSKPIIPEITNGYGYLDLAYRTP--GEIWAGGGNGT--LLVSKDG-GKTWEKDPVGEEVPSNFYKIVFLDPE----  314 (334)
T ss_pred             C-CccccccCCccccccceeeEEEcCC--CCEEEEcCCCe--EEEeCCC-CCCCeECCcCCCCCcceEEEEEeCCC----
Confidence            2 211110011   2245788999987  44666666665  3333332 33333322   222357778877665    


Q ss_pred             ccccCcEEEEeecCCCeEEEEcCC
Q 020107          302 GKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       302 ~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                           +.++.|  ..|.|--|+-.
T Consensus       315 -----~~~~~G--~~G~il~~~~~  331 (334)
T PRK13684        315 -----KGFVLG--QRGVLLRYVGS  331 (334)
T ss_pred             -----ceEEEC--CCceEEEecCC
Confidence                 466655  58999888754

>PHA02790 Kelch-like protein; Provisional

Probab=95.01  E-value=2.4  Score=37.69  Aligned_cols=102  Identities=12%  Similarity=0.129  Sum_probs=53.3

Q ss_pred             CCCeEEEEecC---CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc
Q 020107          116 SATSITVGLSD---GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK  192 (331)
Q Consensus       116 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  192 (331)
                      +++..+.|+.+   ..+..||.+++++.....+.........+++   ++.+.+.|+   .+.+||.++.+-...-.. +
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~W~~~~~m-~  434 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSNTWTLIDDP-I  434 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCCcEeEcCCC-C
Confidence            56666676654   3477899988777554433322222222222   456666663   577899876643221111 1


Q ss_pred             CCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecC
Q 020107          193 IHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRS  227 (331)
Q Consensus       193 ~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~  227 (331)
                      ...... +++..  ++.+.+.||.+     ..+..||..+
T Consensus       435 ~~r~~~-~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        435 YPRDNP-ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             CCcccc-EEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence            112222 22222  57788888764     2455666554

>PRK10115 protease 2; Provisional

Probab=94.96  E-value=3.2  Score=38.78  Aligned_cols=237  Identities=9%  Similarity=-0.040  Sum_probs=113.2

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEc-CCccE-----EEecCCCcccCcc----EEEEEEcCCCCeEEEEecC------CeEEE
Q 020107           68 GIFDIKWSPVGGNAGPFLAQAD-ADGGL-----LRDITGEKISSSM----CLCLEWNPSATSITVGLSD------GSVSI  131 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~-~dg~i-----iw~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d------g~i~i  131 (331)
                      .+..+.|+|+    +++|+.+. .+|.-     +-++.++......    -..++|.++++.|+....+      ..|..
T Consensus       128 ~l~~~~~Spd----g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPD----NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEeEEEECCC----CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            4778899999    77776653 34443     6667655521111    2468999999877665442      36777


Q ss_pred             EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc---CCCeEEEEEccC--CCceeeeecccCCCcceEEEEEecC
Q 020107          132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS---DDCKFSGWDIRE--SPFKLAFQNSKIHKMGVCCIASIPS  206 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~--~~~~~~~~~~~~~~~~v~~~~~~~~  206 (331)
                      +++.++..+....+........-..+.+.++.+++..+   .++.+.+++...  +.....+..   .......+. +. 
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~-~~-  278 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR---RKDHEYSLD-HY-  278 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC---CCCCEEEEE-eC-
Confidence            88877632222333322222332223333555444333   345788888533  322222222   122222222 32 


Q ss_pred             CCCEEEEEec--CC--eEEEEEecCCCCCceeeeeec-C-CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE
Q 020107          207 DSNTLLTGSY--DE--YLRVWDVRSISKPVNETSVCL-G-GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET  280 (331)
Q Consensus       207 ~~~~l~~~~~--d~--~i~iwd~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (331)
                      . ..|..-+.  ..  .|...++... ..... +..+ . ..+..+.+..+  .++++...++..+++.+... ...+..
T Consensus       279 ~-~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~-l~~~~~~~~i~~~~~~~~--~l~~~~~~~g~~~l~~~~~~-~~~~~~  352 (686)
T PRK10115        279 Q-HRFYLRSNRHGKNFGLYRTRVRDE-QQWEE-LIPPRENIMLEGFTLFTD--WLVVEERQRGLTSLRQINRK-TREVIG  352 (686)
T ss_pred             C-CEEEEEEcCCCCCceEEEecCCCc-ccCeE-EECCCCCCEEEEEEEECC--EEEEEEEeCCEEEEEEEcCC-CCceEE
Confidence            2 33333322  12  3433444421 22223 2344 3 36888888743  44444444444444444332 233333


Q ss_pred             ee-cCCcceeeeeec--CCCCcccccccCcEEEEeec--CCCeEEEEcCCCc
Q 020107          281 YA-KHGSLAYGADWQ--RGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESD  327 (331)
Q Consensus       281 ~~-~h~~~v~~~~~~--~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~  327 (331)
                      +. .....+..+.++  ++..        .++++.++  .-+.+..+|+.++
T Consensus       353 l~~~~~~~~~~~~~~~~~~~~--------~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        353 IAFDDPAYVTWIAYNPEPETS--------RLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             ecCCCCceEeeecccCCCCCc--------eEEEEEecCCCCCEEEEEECCCC
Confidence            33 222223333344  2221        45555442  3467788887665

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.90  E-value=1.6  Score=35.12  Aligned_cols=157  Identities=15%  Similarity=0.107  Sum_probs=98.9

Q ss_pred             ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107          106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK  185 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (331)
                      ..+..+.++  +++...+..+.-+++.|+.+.....+..+..-.+-..++..   .+++...+.-|.-+.+.|+.+++..
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCc
Confidence            334455564  46788888888899999988653222222222244455554   4577777775666778999877643


Q ss_pred             eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107          186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF  265 (331)
Q Consensus       186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  265 (331)
                      ...-........-..++.   .+++-..+..|+-+.+.|+.+...|...-.......+.++..+++  ..+++. .+.++
T Consensus       162 ~lagrya~~~~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vv-y~egv  235 (370)
T COG5276         162 QLAGRYALPGGDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVV-YDEGV  235 (370)
T ss_pred             eeeeeeccCCCCceeEEE---ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEE-cccce
Confidence            322211112333345666   467888888999999999998877766533444557889988887  444444 45566


Q ss_pred             EEEEEcCc
Q 020107          266 AVVKVGGE  273 (331)
Q Consensus       266 ~~~~~~~~  273 (331)
                      .+.+....
T Consensus       236 livd~s~~  243 (370)
T COG5276         236 LIVDVSGP  243 (370)
T ss_pred             EEEecCCC
Confidence            66666554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.77  E-value=2  Score=36.64  Aligned_cols=138  Identities=11%  Similarity=-0.026  Sum_probs=69.2

Q ss_pred             eeEEEeeCCCCCcEEEEEc-----------CCC-eEEEEEccCC--Cc--eeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107          151 ELWATSFDVHQPHMVYTGS-----------DDC-KFSGWDIRES--PF--KLAFQNSKIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      ....++|.+ +++++++-.           ..+ .|.+++-..+  +.  ...+..   .-.....+++.+ ++ +++ +
T Consensus        15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---~l~~p~Gi~~~~-~G-lyV-~   87 (367)
T TIGR02604        15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---ELSMVTGLAVAV-GG-VYV-A   87 (367)
T ss_pred             CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---CCCCccceeEec-CC-EEE-e
Confidence            356788887 667666542           223 6766665432  21  122322   234568899988 77 444 4


Q ss_pred             ecCCeEEEEEecCCCC---Cceeeeee-------cCCceEEEEECCCCCCeEEEEEecCc-----------------EEE
Q 020107          215 SYDEYLRVWDVRSISK---PVNETSVC-------LGGGVWRIKHHPFIPGLVLAACMHNG-----------------FAV  267 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~---~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------~~~  267 (331)
                      ......++.|.....+   ....+...       +......++|.|++ .++++.+....                 -.+
T Consensus        88 ~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        88 TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceE
Confidence            4444333445432111   11111111       12347789999996 55555553211                 125


Q ss_pred             EEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107          268 VKVGGEKAEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       268 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                      +++.... ..+..+........+++|++++
T Consensus       167 ~r~~pdg-~~~e~~a~G~rnp~Gl~~d~~G  195 (367)
T TIGR02604       167 FRYNPDG-GKLRVVAHGFQNPYGHSVDSWG  195 (367)
T ss_pred             EEEecCC-CeEEEEecCcCCCccceECCCC
Confidence            5554432 2223333223345689999987

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.75  E-value=2  Score=35.48  Aligned_cols=204  Identities=11%  Similarity=0.046  Sum_probs=105.3

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCc-----------ccCccEEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEK-----------ISSSMCLC  110 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~-----------~~~~~v~~  110 (331)
                      ..+.|.-|+..++.  ...+ . +.+.+.++..-..    +..|+++. .|..+++.....           ......+.
T Consensus        45 ~~~~i~r~~~~~g~--~~~~-~-~p~~~~~~~~~d~----~g~Lv~~~-~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND  115 (307)
T COG3386          45 LGGRIHRLDPETGK--KRVF-P-SPGGFSSGALIDA----GGRLIACE-HGVRLLDPDTGGKITLLAEPEDGLPLNRPND  115 (307)
T ss_pred             CCCeEEEecCCcCc--eEEE-E-CCCCcccceeecC----CCeEEEEc-cccEEEeccCCceeEEeccccCCCCcCCCCc
Confidence            57788888877553  2222 1 2233344443333    33444443 333323322111           11244567


Q ss_pred             EEEcCCCCeEEEEec-----------CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEc
Q 020107          111 LEWNPSATSITVGLS-----------DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDI  179 (331)
Q Consensus       111 ~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  179 (331)
                      +...|+|.+-+....           -|.|+.++. .+..  ++.+..+-..-+.++|+|++..++++=+..+.|.-|++
T Consensus       116 ~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~--~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~  192 (307)
T COG3386         116 GVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV--VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL  192 (307)
T ss_pred             eeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE--EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence            778888876554433           244555554 2322  33344445566789999943344444455588888877


Q ss_pred             cC--CCc--eeeeecccCCCcceEEEEEecCCCCEEEEEecCC-eEEEEEecCCCCCceeeeeecCCceEEEEECC-CCC
Q 020107          180 RE--SPF--KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-YLRVWDVRSISKPVNETSVCLGGGVWRIKHHP-FIP  253 (331)
Q Consensus       180 ~~--~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~  253 (331)
                      ..  +..  ...+.......+..-.++... ++++.+++..+| .|..|+.. + +.+.....+. ..+++++|-- +.+
T Consensus       193 d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G-~l~~~i~lP~-~~~t~~~FgG~~~~  268 (307)
T COG3386         193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-G-KLLGEIKLPV-KRPTNPAFGGPDLN  268 (307)
T ss_pred             CcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-C-cEEEEEECCC-CCCccceEeCCCcC
Confidence            62  111  111111111345556667776 777775554444 89999988 3 5555522232 6677777765 332


Q ss_pred             CeEEEEEe
Q 020107          254 GLVLAACM  261 (331)
Q Consensus       254 ~~~~~~~~  261 (331)
                      .+++++..
T Consensus       269 ~L~iTs~~  276 (307)
T COG3386         269 TLYITSAR  276 (307)
T ss_pred             EEEEEecC
Confidence            34444433

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.66  E-value=2.7  Score=36.55  Aligned_cols=228  Identities=11%  Similarity=0.055  Sum_probs=116.0

Q ss_pred             eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc-
Q 020107           14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG-   92 (331)
Q Consensus        14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-   92 (331)
                      .+.....+|++++||.+--.     +++..-.++++|+.+++ .+......  ..-..+.|.++    ++.|+....+. 
T Consensus       125 ~~~~~~~Spdg~~la~~~s~-----~G~e~~~l~v~Dl~tg~-~l~d~i~~--~~~~~~~W~~d----~~~~~y~~~~~~  192 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSD-----GGSEWYTLRVFDLETGK-FLPDGIEN--PKFSSVSWSDD----GKGFFYTRFDED  192 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEE-----TTSSEEEEEEEETTTTE-EEEEEEEE--EESEEEEECTT----SSEEEEEECSTT
T ss_pred             EeeeeeECCCCCEEEEEecC-----CCCceEEEEEEECCCCc-CcCCcccc--cccceEEEeCC----CCEEEEEEeCcc
Confidence            34344445666899888521     11235569999999885 22222121  12223999999    66655544332 


Q ss_pred             -c------E----EEecCCCccc---------Ccc-EEEEEEcCCCCeEEEEec---C-CeEEEEEcccc--ceeeeeee
Q 020107           93 -G------L----LRDITGEKIS---------SSM-CLCLEWNPSATSITVGLS---D-GSVSIVSVVES--QLEVLQQW  145 (331)
Q Consensus        93 -~------i----iw~~~~~~~~---------~~~-v~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~--~~~~~~~~  145 (331)
                       .      .    .|.+.+....         ... ...+..++++++|+....   + ..+.+.++..+  .......+
T Consensus       193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l  272 (414)
T PF02897_consen  193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL  272 (414)
T ss_dssp             TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred             cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence             2      2    6666554321         222 567889999999765443   3 45788888764  01112333


Q ss_pred             eccccee-EEEeeCCCCCcEEEEEc---CCCeEEEEEccCCCc---eeeeecccCCCc--ceEEEEEecCCCCEEEEEec
Q 020107          146 KAHEFEL-WATSFDVHQPHMVYTGS---DDCKFSGWDIRESPF---KLAFQNSKIHKM--GVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       146 ~~~~~~v-~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~  216 (331)
                      ......+ ..+...  ++.+++...   ..+.|...++.....   ...+..   +..  .+..+...  ...+++.--.
T Consensus       273 ~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~--~~~Lvl~~~~  345 (414)
T PF02897_consen  273 SPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLF--KDYLVLSYRE  345 (414)
T ss_dssp             EESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEE--TTEEEEEEEE
T ss_pred             eCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEE--CCEEEEEEEE
Confidence            3233333 333332  444444443   346777788887663   112222   444  45555543  3455555555


Q ss_pred             CC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107          217 DE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       217 d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  261 (331)
                      ++  .|+++|+.. ..........-.+.|..+...++.+.+++..++
T Consensus       346 ~~~~~l~v~~~~~-~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss  391 (414)
T PF02897_consen  346 NGSSRLRVYDLDD-GKESREIPLPEAGSVSGVSGDFDSDELRFSYSS  391 (414)
T ss_dssp             TTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEE
T ss_pred             CCccEEEEEECCC-CcEEeeecCCcceEEeccCCCCCCCEEEEEEeC
Confidence            65  477788872 122333223344556666666665455555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.66  E-value=1.8  Score=34.65  Aligned_cols=206  Identities=14%  Similarity=0.107  Sum_probs=107.1

Q ss_pred             eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCC-cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107            6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNG-SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g-~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   84 (331)
                      ..+......|.++|..|  .-++.+-          +-| ...++|......+..........---.=.|||+    +.+
T Consensus        64 ~~lpaR~Hgi~~~p~~~--ravafAR----------rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~d----G~~  127 (366)
T COG3490          64 TALPARGHGIAFHPALP--RAVAFAR----------RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPD----GRL  127 (366)
T ss_pred             eecccccCCeecCCCCc--ceEEEEe----------cCCceEEEECCCCCcCcEEEecccCceeecccccCCC----CcE
Confidence            34445566788999887  6777775          344 467788887763322221110001112348999    888


Q ss_pred             EEEEcCC-----ccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecC-------C-----------eEEEEE
Q 020107           85 LAQADAD-----GGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSD-------G-----------SVSIVS  133 (331)
Q Consensus        85 l~~~~~d-----g~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d-------g-----------~i~i~d  133 (331)
                      |...-.|     |.| +++....-.       +.-....+.|.+||+.++.+...       |           ++.+.|
T Consensus       128 LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld  207 (366)
T COG3490         128 LYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLD  207 (366)
T ss_pred             EEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEe
Confidence            8876544     333 888764322       22334578899999998876530       1           233333


Q ss_pred             ccccceeeeeeee--cccceeEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCCceeeeeccc----CCCcceEEEE
Q 020107          134 VVESQLEVLQQWK--AHEFELWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESPFKLAFQNSK----IHKMGVCCIA  202 (331)
Q Consensus       134 ~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~  202 (331)
                      ..++.+....++.  .+...+..++..+ ++..++.+-..|     --.+=-.+.++....+...+    .-...|-+|+
T Consensus       208 ~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA  286 (366)
T COG3490         208 AATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIA  286 (366)
T ss_pred             ccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhhee
Confidence            3333321122222  2334456666654 444433332111     11111112222222222210    0134577888


Q ss_pred             EecCCCCEEEEEecCCeEEEEEecCC
Q 020107          203 SIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       203 ~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      .+..++-..+|.-..+...+||..++
T Consensus       287 ~n~~~glV~lTSP~GN~~vi~da~tG  312 (366)
T COG3490         287 ANRRDGLVALTSPRGNRAVIWDAATG  312 (366)
T ss_pred             ecccCCeEEEecCCCCeEEEEEcCCC
Confidence            88744555555556678889999996

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.66  E-value=1.6  Score=37.45  Aligned_cols=139  Identities=10%  Similarity=0.060  Sum_probs=84.5

Q ss_pred             CCeEEEEecCCeEEEEEccccceeeeeee-ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec-ccCC
Q 020107          117 ATSITVGLSDGSVSIVSVVESQLEVLQQW-KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN-SKIH  194 (331)
Q Consensus       117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~  194 (331)
                      .+..+.+...|.+.-|..........-.+ ....++|.++.|++ +.+.++.--.+..|.+++....+....... -+..
T Consensus        33 aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k  111 (657)
T KOG2377|consen   33 ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK  111 (657)
T ss_pred             CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence            33333334445556666554221111122 22456899999999 889999999999999999854332222221 1223


Q ss_pred             CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE
Q 020107          195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC  260 (331)
Q Consensus       195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  260 (331)
                      ...|....|..  ..-+|.....| +-+|-....++.+.. ...|...|.=..|+|+-.-.+++++
T Consensus       112 ~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~pekrslRl-Vks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  112 NANILGFCWTS--STEIAFITDQG-IEFYQVLPEKRSLRL-VKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             cceeEEEEEec--CeeEEEEecCC-eEEEEEchhhhhhhh-hhhcccCccEEEEccccceEeeecc
Confidence            45588889985  45566665544 777777665444433 4567778888888888644555555

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.65  E-value=1.1  Score=38.44  Aligned_cols=135  Identities=11%  Similarity=0.002  Sum_probs=84.8

Q ss_pred             EEEeeCCCCCcEEEEEcCCCeEEEEEccCCC--ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC
Q 020107          153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESP--FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK  230 (331)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  230 (331)
                      +.+-|.  +.+..+.+...|.+.-|-.....  ....+..  ...++|.++.|++ |.+.+|+--.|..|.+++.... +
T Consensus        26 ngvFfD--DaNkqlfavrSggatgvvvkgpndDVpiSfdm--~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d-~   99 (657)
T KOG2377|consen   26 NGVFFD--DANKQLFAVRSGGATGVVVKGPNDDVPISFDM--DDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPD-N   99 (657)
T ss_pred             cceeec--cCcceEEEEecCCeeEEEEeCCCCCCCceeee--cCCCceeEEEecc-CcceEEEEecCceEEEEecCCC-c
Confidence            445554  23333333345555666555332  2223322  2466999999999 9999999999999999998542 2


Q ss_pred             Cceee---eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107          231 PVNET---SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       231 ~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                      +..+.   ....+..|....|+...  -+ +--.+.++.++.+... .+.++..+.|.-.|.=..|.++.
T Consensus       100 ~~l~~~~~ck~k~~~IlGF~W~~s~--e~-A~i~~~G~e~y~v~pe-krslRlVks~~~nvnWy~yc~et  165 (657)
T KOG2377|consen  100 SQLEYTQECKTKNANILGFCWTSST--EI-AFITDQGIEFYQVLPE-KRSLRLVKSHNLNVNWYMYCPET  165 (657)
T ss_pred             hhhHHHHHhccCcceeEEEEEecCe--eE-EEEecCCeEEEEEchh-hhhhhhhhhcccCccEEEEcccc
Confidence            22221   12334458889998863  23 3334567778888765 45555666777778778888876

>PRK10115 protease 2; Provisional

Probab=94.56  E-value=4  Score=38.12  Aligned_cols=197  Identities=8%  Similarity=0.000  Sum_probs=100.2

Q ss_pred             ccEEEEEEcCCCCeEEEEec-----CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-----CeEE
Q 020107          106 SMCLCLEWNPSATSITVGLS-----DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-----CKFS  175 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~  175 (331)
                      -.+..+.|+|++++|+.+..     ...|++.|+.++... ...+.. .  -..++|.+++..++++...+     ..|.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence            34567889999998877644     235888898877521 112221 1  14589998443444444322     3677


Q ss_pred             EEEccCC--CceeeeecccCCCcceE-EEEEecCCCCEEEEEec---CCeEEEEEecCCC-CCceeeeeecC-CceEEEE
Q 020107          176 GWDIRES--PFKLAFQNSKIHKMGVC-CIASIPSDSNTLLTGSY---DEYLRVWDVRSIS-KPVNETSVCLG-GGVWRIK  247 (331)
Q Consensus       176 i~d~~~~--~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~-~~~~~~~~~~~-~~v~~~~  247 (331)
                      .+++.++  +....+..   ...... .+..+. ++.+++..+.   ++.+.+++..... .+...  ..+. +....+.
T Consensus       203 ~h~lgt~~~~d~lv~~e---~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~  276 (686)
T PRK10115        203 RHTIGTPASQDELVYEE---KDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAELADAEPFVF--LPRRKDHEYSLD  276 (686)
T ss_pred             EEECCCChhHCeEEEee---CCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcCCCCCceEE--EECCCCCEEEEE
Confidence            8888877  33344443   122222 223333 6666555443   3568888854321 22222  2222 2222332


Q ss_pred             ECCCCCCeEEEEEe-cCcEEEEEEcCcccceeEEeecC-C-cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          248 HHPFIPGLVLAACM-HNGFAVVKVGGEKAEVLETYAKH-G-SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       248 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h-~-~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                       +... .+++.+.. ....+++.+.-........+-.+ . ..+.++.+..+          .++++.. .++.-+++-+
T Consensus       277 -~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~l~~~~~-~~g~~~l~~~  343 (686)
T PRK10115        277 -HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD----------WLVVEER-QRGLTSLRQI  343 (686)
T ss_pred             -eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC----------EEEEEEE-eCCEEEEEEE
Confidence             2221 34443322 23344554433211222333344 2 36778888744          4677776 7777666544


Q ss_pred             C
Q 020107          325 E  325 (331)
Q Consensus       325 ~  325 (331)
                      +
T Consensus       344 ~  344 (686)
T PRK10115        344 N  344 (686)
T ss_pred             c
Confidence            3

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.48  E-value=1.1  Score=31.40  Aligned_cols=110  Identities=13%  Similarity=0.102  Sum_probs=68.0

Q ss_pred             EEEcCCCCeEEEEecCCeEEEEEccccc------eeeeeeeecccceeEEEeeCC---C-CCcEEEEEcCCCeEEEEEcc
Q 020107          111 LEWNPSATSITVGLSDGSVSIVSVVESQ------LEVLQQWKAHEFELWATSFDV---H-QPHMVYTGSDDCKFSGWDIR  180 (331)
Q Consensus       111 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~v~~~~~~~---~-~~~~l~~~~~dg~i~i~d~~  180 (331)
                      -.|....+.|++++.-|.|.|++.....      ...+..+. -...|++++-.+   . ....|+.|+ ...|..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            4566666788888899999999876431      12233333 234566665443   2 345677766 5678899999


Q ss_pred             CCCceeeeecccCCCcceEEEEEecC---CCCEEEEEecCCeEEEEEecC
Q 020107          181 ESPFKLAFQNSKIHKMGVCCIASIPS---DSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       181 ~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      ....+....    -.+.|+++.+-..   ...++++|+ +..|.-||...
T Consensus        82 ~N~d~Fyke----~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G  126 (136)
T PF14781_consen   82 NNSDLFYKE----VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG  126 (136)
T ss_pred             cCchhhhhh----CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence            776443333    3577888877431   234555554 56677777654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.42  E-value=0.0082  Score=50.88  Aligned_cols=134  Identities=8%  Similarity=0.080  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeee
Q 020107          109 LCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAF  188 (331)
Q Consensus       109 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  188 (331)
                      ....|-+.+..++.++.+..+..||-....   ..... .......++|....+..++.+-..+.+.+||+.+.. .+.+
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqL  112 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQL  112 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcce---ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHH
Confidence            456788888889999999999999965432   22222 344566788887444566677788999999998654 2233


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI  252 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  252 (331)
                      .....|....  +.|++ ....++.+-..|.+.+++....++.+..  -.|..+++++++.+.+
T Consensus       113 E~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~--Gkh~RRgtq~av~lEd  171 (615)
T KOG2247|consen  113 ESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVM--GKHQRRGTQIAVTLED  171 (615)
T ss_pred             hccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhhhhh--cccccceeEEEecccc
Confidence            3212233333  78888 7788888889999999999886444443  3488899999999873

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.41  E-value=4.1  Score=37.58  Aligned_cols=110  Identities=12%  Similarity=0.126  Sum_probs=67.4

Q ss_pred             CCCEEEEEecCCeEEEEEecCCC-------------------CCceeeeeecCCceEEEEEC--CCCCCeEEEEEecCcE
Q 020107          207 DSNTLLTGSYDEYLRVWDVRSIS-------------------KPVNETSVCLGGGVWRIKHH--PFIPGLVLAACMHNGF  265 (331)
Q Consensus       207 ~~~~l~~~~~d~~i~iwd~~~~~-------------------~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~  265 (331)
                      +...|+.+..||.|.+|..+..-                   +|..  .......++.++++  ... .+++++.....|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f--~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~V  189 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFF--HLRVGASAWGLDIHDYKKS-RLIAVSSNSQEV  189 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCe--EeecCCceeEEEEEecCcc-eEEEEecCCceE
Confidence            45688999999999999763210                   1222  24456688999998  442 444444445556


Q ss_pred             EEEEEcCcccceeE-EeecCCcceeeeeecCCCCcccccccC-cEEEEeecCCCeEEEEcC
Q 020107          266 AVVKVGGEKAEVLE-TYAKHGSLAYGADWQRGRSSLEGKRKN-SLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       266 ~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~l~s~~~~d~~i~iW~~  324 (331)
                      .++-......+... .-..|...|-+++|.++..    ++.+ ..|++++ -.|.+-+|++
T Consensus       190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~----d~~G~v~v~a~d-I~G~v~~~~I  245 (717)
T PF08728_consen  190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDL----DPNGHVKVVATD-ISGEVWTFKI  245 (717)
T ss_pred             EEEEEeccccccccccccccccCCCeeEeecCCC----CCccceEEEEEe-ccCcEEEEEE
Confidence            66655442111111 1113566889999998762    1112 2777788 8999988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.20  E-value=4.9  Score=37.59  Aligned_cols=66  Identities=23%  Similarity=0.383  Sum_probs=50.2

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccEE------EecCC----Ccc-----------------cCccEEEEEEcCC---C
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGLL------RDITG----EKI-----------------SSSMCLCLEWNPS---A  117 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~ii------w~~~~----~~~-----------------~~~~v~~~~~~~~---~  117 (331)
                      .|..|..+|+    +++|+..+..|..+      |-...    ++.                 +...|..+.|+|.   +
T Consensus        86 ~v~~i~~n~~----g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   86 EVHQISLNPT----GSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             eEEEEEECCC----CCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            5889999999    99999999888772      32111    110                 2456788999996   4


Q ss_pred             CeEEEEecCCeEEEEEcccc
Q 020107          118 TSITVGLSDGSVSIVSVVES  137 (331)
Q Consensus       118 ~~l~~~~~dg~i~i~d~~~~  137 (331)
                      ..|++-..|+++|+||+...
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CeEEEEecCCEEEEEecCCC
Confidence            78999999999999999763

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.12  E-value=2.5  Score=34.06  Aligned_cols=163  Identities=9%  Similarity=0.064  Sum_probs=96.4

Q ss_pred             ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107          106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK  185 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (331)
                      ..+.++.|+|+.+.|++......-.++=..+|+......+.+ -.....+.+.. ++.+.++--+++.+.++.+......
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccE
Confidence            448899999999998888877776666555665522222332 22345667764 6667777678888888877654321


Q ss_pred             e-----eeec--ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee-ee-------cCCceEEEEECC
Q 020107          186 L-----AFQN--SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS-VC-------LGGGVWRIKHHP  250 (331)
Q Consensus       186 ~-----~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~-------~~~~v~~~~~~~  250 (331)
                      .     .+..  ........-.++|.| ....|...-+-.-+.||........+.... ..       .-..|..+.|++
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence            1     1211  111256778999999 666666666667788887765332222100 01       123477889998


Q ss_pred             CCCCeEEEEEecCcEEEEEEcCc
Q 020107          251 FIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      ..+.++ +-+.+.+ .+..+...
T Consensus       243 ~~~~LL-VLS~ESr-~l~Evd~~  263 (316)
T COG3204         243 ITNSLL-VLSDESR-RLLEVDLS  263 (316)
T ss_pred             CCCcEE-EEecCCc-eEEEEecC
Confidence            763444 4444333 24444443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.11  E-value=4.1  Score=38.08  Aligned_cols=84  Identities=12%  Similarity=0.109  Sum_probs=55.2

Q ss_pred             cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC----------CCc-e--eeeec-----ccCCCcceEEEEEecC--CC
Q 020107          149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE----------SPF-K--LAFQN-----SKIHKMGVCCIASIPS--DS  208 (331)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~-~--~~~~~-----~~~~~~~v~~~~~~~~--~~  208 (331)
                      ...|..+..+| ++.+++..+..|.. |..+..          ++. +  ..+..     ...+...|..+.|+|.  ++
T Consensus        84 ~f~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   84 LFEVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             ceeEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            35788999998 77888877765544 444321          111 0  01100     1224567999999994  25


Q ss_pred             CEEEEEecCCeEEEEEecCCCCCcee
Q 020107          209 NTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       209 ~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      ..|++-..|+++|+||+.....|...
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~~p~~v  187 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQHPWQV  187 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCCCCeEE
Confidence            78889999999999999876555444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.04  E-value=4.4  Score=36.51  Aligned_cols=106  Identities=13%  Similarity=0.106  Sum_probs=60.0

Q ss_pred             CCeEEEEecCCeEEEEEccccceeeeeeeecccceeE----------EEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107          117 ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW----------ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL  186 (331)
Q Consensus       117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  186 (331)
                      +..+++++.++.|.-+|..+++..-....... ..+.          .+++.   +..++.++.|+.|.-.|.++++.+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVVW  144 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEEe
Confidence            45677778888888889888764221111111 1111          11221   2457778889999999999998765


Q ss_pred             eeecccCCC--cceEE-EEEecCCCCEEEEEe------cCCeEEEEEecCCCC
Q 020107          187 AFQNSKIHK--MGVCC-IASIPSDSNTLLTGS------YDEYLRVWDVRSISK  230 (331)
Q Consensus       187 ~~~~~~~~~--~~v~~-~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~  230 (331)
                      ..... .+.  ..+.+ -.+.  ++ .++++.      .+|.|.-+|.++++.
T Consensus       145 ~~~~~-~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       145 SKKNG-DYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             ecccc-cccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCce
Confidence            55431 111  11111 1111  33 444443      268899999988643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.79  E-value=3.9  Score=34.97  Aligned_cols=104  Identities=8%  Similarity=-0.013  Sum_probs=53.8

Q ss_pred             EEEEEEcCCCCeEEEEe-----------cCC-eEEEEEccc--cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCe
Q 020107          108 CLCLEWNPSATSITVGL-----------SDG-SVSIVSVVE--SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCK  173 (331)
Q Consensus       108 v~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  173 (331)
                      ...|+|.++|+.+++-.           ..+ .|.+++-..  ++......+.........+++.+ ++ +++ +.....
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~i   92 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPDI   92 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCeE
Confidence            44667777777655532           223 676665432  33322334433334567888886 55 444 444443


Q ss_pred             EEEEEccCC-----CceeeeecccC----CCcceEEEEEecCCCCEEEEEe
Q 020107          174 FSGWDIRES-----PFKLAFQNSKI----HKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       174 i~i~d~~~~-----~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      .++.|....     +....+.....    +......+.|.| ++.+.++-+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G  142 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHG  142 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecc
Confidence            344455321     22222222221    234578899999 877665544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.69  E-value=2.6  Score=32.78  Aligned_cols=150  Identities=8%  Similarity=-0.053  Sum_probs=84.8

Q ss_pred             CccEEEEEEcCCCCeEEEEec---------CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEE
Q 020107          105 SSMCLCLEWNPSATSITVGLS---------DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS  175 (331)
Q Consensus       105 ~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  175 (331)
                      +.+.+.-..+|+|++.+-...         .|.++.|-... +.   ..+...-..-+.++|+.+...+.++-+.+-.|.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~v---~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-QV---ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-Cc---eeeehhccCCccccccccCcEEEEEccCceEEe
Confidence            344556667889988432222         24455554432 21   112222233457889864445556666777887


Q ss_pred             EEE--ccCCCce---eeeeccc--C-CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEE
Q 020107          176 GWD--IRESPFK---LAFQNSK--I-HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIK  247 (331)
Q Consensus       176 i~d--~~~~~~~---~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  247 (331)
                      -||  ..++...   ..+...+  + ..-..-.+++.. .+++.++.-..++|...|..+++ .+.++ .-....|++++
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK-~L~ei-klPt~qitscc  260 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGK-ILLEI-KLPTPQITSCC  260 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCc-EEEEE-EcCCCceEEEE
Confidence            777  4444321   1122111  0 011123344555 78888888889999999999974 44442 34477899999


Q ss_pred             ECCCCCCeEEEEEe
Q 020107          248 HHPFIPGLVLAACM  261 (331)
Q Consensus       248 ~~~~~~~~~~~~~~  261 (331)
                      |-...-..+.+++.
T Consensus       261 FgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  261 FGGKNLDILYVTTA  274 (310)
T ss_pred             ecCCCccEEEEEeh
Confidence            97643345555544

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.64  E-value=7  Score=37.44  Aligned_cols=79  Identities=9%  Similarity=0.071  Sum_probs=48.7

Q ss_pred             eeecCcceeEeeecCCC---CCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCC-
Q 020107            6 CELDGNADAVEFCPQDS---YHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNA-   81 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~---~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-   81 (331)
                      .+++.-+.|++..+...   .-++++.|+          .++.++++.++...........+-..++.++.+-+..... 
T Consensus       579 ~tl~~~vac~ai~~~~~g~krsrfla~a~----------~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~  648 (1205)
T KOG1898|consen  579 VTLSTDVACLAIGQDPEGEKRSRFLALAS----------VDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGG  648 (1205)
T ss_pred             eeeceeehhhccCCCCcchhhcceeeeec----------cccceeEEEecCcceEEEccccccCCCccceEEEEecccCC
Confidence            35667788888877652   225799998          6999999999865422222223334445555554433221 


Q ss_pred             ----CCeEEEEcCCccE
Q 020107           82 ----GPFLAQADADGGL   94 (331)
Q Consensus        82 ----~~~l~~~~~dg~i   94 (331)
                          .-+|.+|-.+|.+
T Consensus       649 ~~~~~L~l~~GL~NGvl  665 (1205)
T KOG1898|consen  649 TDVAQLYLLIGLRNGVL  665 (1205)
T ss_pred             ccceeEEEEecccccEE
Confidence                1257778888877

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.11  E-value=1.4  Score=37.71  Aligned_cols=160  Identities=11%  Similarity=0.035  Sum_probs=93.7

Q ss_pred             ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc----eeE-EEeeCCCCCcEEEEEcCCCeEEEE-Ec
Q 020107          106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF----ELW-ATSFDVHQPHMVYTGSDDCKFSGW-DI  179 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~l~~~~~dg~i~i~-d~  179 (331)
                      ..+..+-..|+++.+.+-+. .++.++++.+...+..+......+    .|+ .+..- ..+..+..++.||.|.-| |.
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~vsQWFdv  298 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGLVSQWFDV  298 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCceeeeeee
Confidence            34556678899999887766 778889887654322211111111    122 11111 256678888889988766 66


Q ss_pred             cCCCceeee---ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeE
Q 020107          180 RESPFKLAF---QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLV  256 (331)
Q Consensus       180 ~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  256 (331)
                      +.... +.+   ..++-....+..+.-.. +.+-+++-...|++.++..... +++..  ...-..+.-+++||.+  -.
T Consensus       299 r~~~~-p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~-~~lL~--~~~~~~~~~~~~Sp~~--~~  371 (733)
T COG4590         299 RRDGQ-PHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSE-KLLLF--ERAYQAPQLVAMSPNQ--AY  371 (733)
T ss_pred             ecCCC-CcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccC-cceeh--hhhhcCcceeeeCccc--ch
Confidence            64432 211   11111233444443333 5567888888999998876653 33333  3333467788999985  33


Q ss_pred             EEEEecCcEEEEEEcCcc
Q 020107          257 LAACMHNGFAVVKVGGEK  274 (331)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~  274 (331)
                      +..-..++++++.+.+..
T Consensus       372 Ll~e~~gki~~~~l~Nr~  389 (733)
T COG4590         372 LLSEDQGKIRLAQLENRN  389 (733)
T ss_pred             heeecCCceEEEEecCCC
Confidence            444566788888887753

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.08  E-value=1.2  Score=38.40  Aligned_cols=82  Identities=18%  Similarity=0.235  Sum_probs=53.8

Q ss_pred             cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE-Eee-CCCC----------------CcEEEEE
Q 020107          107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA-TSF-DVHQ----------------PHMVYTG  168 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~-~~~-~~~~----------------~~~l~~~  168 (331)
                      .+.++..+|.+++.++...-|.|.++|+.++..  ++.+++..+.-.. +.. .+..                --+++-+
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v--vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIV--VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChh--hhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            467889999999888888889999999998744  5556554322111 000 0000                0134445


Q ss_pred             cCCCeEEEEEccCCCceeeeec
Q 020107          169 SDDCKFSGWDIRESPFKLAFQN  190 (331)
Q Consensus       169 ~~dg~i~i~d~~~~~~~~~~~~  190 (331)
                      -.-|.|.||.++++..+..+..
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEEe
Confidence            6788999999998876666654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.07  E-value=5  Score=34.08  Aligned_cols=216  Identities=14%  Similarity=0.111  Sum_probs=91.1

Q ss_pred             CCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEec
Q 020107           20 QDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDI   98 (331)
Q Consensus        20 ~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~   98 (331)
                      +.++|+.|+.++-       .+....+++.|+.+++  +..+..+.........++|+    .+.++-......+ --++
T Consensus        43 ft~dG~kllF~s~-------~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~----~~~~~Yv~~~~~l~~vdL  109 (386)
T PF14583_consen   43 FTDDGRKLLFASD-------FDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPD----DRALYYVKNGRSLRRVDL  109 (386)
T ss_dssp             B-TTS-EEEEEE--------TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TT----SSEEEEEETTTEEEEEET
T ss_pred             cCCCCCEEEEEec-------cCCCcceEEEEcccCE--EEECccCCCCCccceEEecC----CCeEEEEECCCeEEEEEC
Confidence            3455565555541       1124455566666664  55553432233345667787    5565443333344 4455


Q ss_pred             CCCcc------cCccEEEEEEc--CCCCeEEEEec-----------------------CCeEEEEEccccceeeeeeeec
Q 020107           99 TGEKI------SSSMCLCLEWN--PSATSITVGLS-----------------------DGSVSIVSVVESQLEVLQQWKA  147 (331)
Q Consensus        99 ~~~~~------~~~~v~~~~~~--~~~~~l~~~~~-----------------------dg~i~i~d~~~~~~~~~~~~~~  147 (331)
                      .+.+.      +..-+-...|.  .++.. ++|..                       ...|.-.|+.+++...+  + .
T Consensus       110 ~T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v--~-~  185 (386)
T PF14583_consen  110 DTLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV--F-E  185 (386)
T ss_dssp             TT--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE--E-E
T ss_pred             CcCcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE--E-e
Confidence            55432      12222233443  23333 22221                       13455566766654222  2 2


Q ss_pred             ccceeEEEeeCCCCCcEEEEEcCC---C-eEEEEEccCCC-ceeeeecccCCCcceEEEEEecCCCCEEEEEe-----cC
Q 020107          148 HEFELWATSFDVHQPHMVYTGSDD---C-KFSGWDIRESP-FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-----YD  217 (331)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~d  217 (331)
                      ....+..+.|+|.++.+|+-|-+.   . .-|||-+++.. ....+.. ......+..=-|.| +|..|.--+     .+
T Consensus       186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~  263 (386)
T PF14583_consen  186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-RMEGESVGHEFWVP-DGSTIWYDSYTPGGQD  263 (386)
T ss_dssp             ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-T-TSS-EEEEEEETTT--
T ss_pred             cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-CCCCcccccccccC-CCCEEEEEeecCCCCc
Confidence            345677899999888888887642   2 23677766432 2222222 11233455556788 666554422     24


Q ss_pred             CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE
Q 020107          218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC  260 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  260 (331)
                      ..|.-+|..+.+..  . +.... ....+--+++  +.++++-
T Consensus       264 ~~i~~~d~~t~~~~--~-~~~~p-~~~H~~ss~D--g~L~vGD  300 (386)
T PF14583_consen  264 FWIAGYDPDTGERR--R-LMEMP-WCSHFMSSPD--GKLFVGD  300 (386)
T ss_dssp             EEEEEE-TTT--EE--E-EEEE--SEEEEEE-TT--SSEEEEE
T ss_pred             eEEEeeCCCCCCce--E-EEeCC-ceeeeEEcCC--CCEEEec
Confidence            45666777765322  1 12222 3445555677  4555443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.59  E-value=3.8  Score=31.53  Aligned_cols=145  Identities=15%  Similarity=0.186  Sum_probs=82.8

Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC------eEEEE---Eec-CCCCCc
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE------YLRVW---DVR-SISKPV  232 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~------~i~iw---d~~-~~~~~~  232 (331)
                      +.|+.+...+.|.+|++.+..+...... + .-+.|..+.++. .|++++|--.+.      .+|+|   ... ....++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~-Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTF-S-TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEE-c-chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            4444446678899999995443332222 1 357899999999 899999975432      45654   222 111222


Q ss_pred             ee---------------------eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc--ce--eEEee----c
Q 020107          233 NE---------------------TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA--EV--LETYA----K  283 (331)
Q Consensus       233 ~~---------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~----~  283 (331)
                      ..                     ...+...++.+++..|-. +.++++ .++.+.+|.+.....  +.  +.-|.    .
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~t-G~LlVg-~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~  183 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVT-GNLLVG-CGNKLVLFTLKYQTIQSEKFSFLDFERSLID  183 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCC-CCEEEE-cCCEEEEEEEEEEEEecccccEEechhhhhh
Confidence            21                     123344567888888876 555554 456777877754322  11  11111    1


Q ss_pred             C-Cc-ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          284 H-GS-LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       284 h-~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      | .+ ....+++..           .++|..+  +-.+++..+.
T Consensus       184 ~~~~~~p~~v~ic~-----------~yiA~~s--~~ev~Vlkl~  214 (215)
T PF14761_consen  184 HIDNFKPTQVAICE-----------GYIAVMS--DLEVLVLKLE  214 (215)
T ss_pred             eecCceEEEEEEEe-----------eEEEEec--CCEEEEEEEe
Confidence            1 11 244555554           3788776  7788877654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.55  E-value=6.9  Score=34.43  Aligned_cols=35  Identities=9%  Similarity=0.010  Sum_probs=27.4

Q ss_pred             eeEEEeeCCCC--CcEEEEEcCCCeEEEEEccCCCce
Q 020107          151 ELWATSFDVHQ--PHMVYTGSDDCKFSGWDIRESPFK  185 (331)
Q Consensus       151 ~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~  185 (331)
                      .+..++|+|+.  ...+..-+.|..+|+||+......
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence            46678999965  566777778999999999876544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.36  E-value=4.9  Score=32.26  Aligned_cols=144  Identities=10%  Similarity=-0.064  Sum_probs=82.7

Q ss_pred             cEEEEEEcCCCCeEEEEe---cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEE-ccCC
Q 020107          107 MCLCLEWNPSATSITVGL---SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWD-IRES  182 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~  182 (331)
                      .+.+.+++++++.++...   ....++++......   ...+.  ...+..-.|++ ++...+....+...+++. ...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~---~~~~~--g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV---RPVLT--GGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc---eeecc--CCccccccccC-CCCEEEEEcCCCceEEEEecCCC
Confidence            567888899998776655   33455555543221   11122  23677889998 566666666666666663 3333


Q ss_pred             Ccee-eeecccCCCcceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCC--Cce-----eeeeecCCceEEEEECCC
Q 020107          183 PFKL-AFQNSKIHKMGVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISK--PVN-----ETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       183 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~--~~~-----~~~~~~~~~v~~~~~~~~  251 (331)
                      .... .... ..-...|.++.++| ++..++.-.   .++.|.+=-+.....  +..     .........+..+.|.++
T Consensus        99 ~~~~~~v~~-~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen   99 TGEPVEVDW-PGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             cceeEEecc-cccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            3222 1222 11122899999999 888877765   356777765543211  111     111233467899999999


Q ss_pred             CCCeEEEE
Q 020107          252 IPGLVLAA  259 (331)
Q Consensus       252 ~~~~~~~~  259 (331)
                      . .+++.+
T Consensus       177 ~-~L~V~~  183 (253)
T PF10647_consen  177 S-TLVVLG  183 (253)
T ss_pred             C-EEEEEe
Confidence            5 333333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.36  E-value=7.3  Score=34.21  Aligned_cols=144  Identities=14%  Similarity=0.120  Sum_probs=85.1

Q ss_pred             CCCeEE-EEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC------CcEEEEEcCCCeEEEEEccCCCc-eee
Q 020107          116 SATSIT-VGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ------PHMVYTGSDDCKFSGWDIRESPF-KLA  187 (331)
Q Consensus       116 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-~~~  187 (331)
                      +..+|+ .|.....++-.|++.|+.  +..+..|..-  -+.|.|..      ...-+.|-.+..|.-.|.|-... +..
T Consensus       478 dssli~~dg~~~~kLykmDIErGkv--veeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKV--VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CcceEEecCCCcccceeeeccccee--eeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence            444443 344566777778887765  7777766643  56777731      12234455566666677765332 222


Q ss_pred             eecccCCCcceEEEEEec---CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107          188 FQNSKIHKMGVCCIASIP---SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG  264 (331)
Q Consensus       188 ~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  264 (331)
                      ...    ...++.-.|+.   ....++|+++..|-|++||--.-  ...+.+.+.+..|..+..+.+| ..++++|. ..
T Consensus       554 ~es----KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~--rAKtalP~lG~aIk~idvta~G-k~ilaTCk-~y  625 (776)
T COG5167         554 VES----KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK--RAKTALPGLGDAIKHIDVTANG-KHILATCK-NY  625 (776)
T ss_pred             eee----hhccccccccccccccCceEEEecCCCceeeehhhcc--hhhhcCcccccceeeeEeecCC-cEEEEeec-ce
Confidence            221    22222222221   13568999999999999997542  2223346778889999999987 56666654 45


Q ss_pred             EEEEEEc
Q 020107          265 FAVVKVG  271 (331)
Q Consensus       265 ~~~~~~~  271 (331)
                      +.+.++.
T Consensus       626 llL~d~~  632 (776)
T COG5167         626 LLLTDVP  632 (776)
T ss_pred             EEEEecc
Confidence            5555554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.36  E-value=4.3  Score=31.65  Aligned_cols=103  Identities=12%  Similarity=0.072  Sum_probs=67.6

Q ss_pred             EEEEEcCCCCeEEEEec-CCeEEEEE--cccccee---eeeeeec----ccceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107          109 LCLEWNPSATSITVGLS-DGSVSIVS--VVESQLE---VLQQWKA----HEFELWATSFDVHQPHMVYTGSDDCKFSGWD  178 (331)
Q Consensus       109 ~~~~~~~~~~~l~~~~~-dg~i~i~d--~~~~~~~---~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  178 (331)
                      +.++|+.+.+.+..... +-+|.-||  ..++...   .+..++.    .....-.++... ++++.+++-..++|...|
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence            57889988887765544 77887787  4444321   1222221    011112334443 788899999999999999


Q ss_pred             ccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107          179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      ..+++.+..+..   ....|+|++|---+-..|++..
T Consensus       240 p~tGK~L~eikl---Pt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  240 PTTGKILLEIKL---PTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CCCCcEEEEEEc---CCCceEEEEecCCCccEEEEEe
Confidence            999999999888   5888999999642334454443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.15  E-value=7.2  Score=33.68  Aligned_cols=110  Identities=11%  Similarity=0.006  Sum_probs=63.7

Q ss_pred             CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC----Cceeeeee-cCCceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107          194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK----PVNETSVC-LGGGVWRIKHHPFIPGLVLAACMHNGFAVV  268 (331)
Q Consensus       194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  268 (331)
                      ....+.++.+.+ ++.+++++ .+|.+.. ....+..    .+...... ....+..+.|.++  +.++++|..+.  ++
T Consensus       279 ~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d--~~~~a~G~~G~--v~  351 (398)
T PLN00033        279 SARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSK--KEAWAAGGSGI--LL  351 (398)
T ss_pred             CccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCC--CcEEEEECCCc--EE
Confidence            355688999988 77777665 5565433 3333211    12221111 2235889999988  56677777665  33


Q ss_pred             EEcCcccceeEEee---cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107          269 KVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       269 ~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW  322 (331)
                      ...+. ++.-....   .-....+.+.|.+++         +.+++|  .+|.|.-|
T Consensus       352 ~s~D~-G~tW~~~~~~~~~~~~ly~v~f~~~~---------~g~~~G--~~G~il~~  396 (398)
T PLN00033        352 RSTDG-GKSWKRDKGADNIAANLYSVKFFDDK---------KGFVLG--NDGVLLRY  396 (398)
T ss_pred             EeCCC-CcceeEccccCCCCcceeEEEEcCCC---------ceEEEe--CCcEEEEe
Confidence            33332 33323222   334578899998876         466665  58888665

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.05  E-value=9.9  Score=35.06  Aligned_cols=194  Identities=15%  Similarity=0.107  Sum_probs=97.5

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc---------CccEEEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS---------SSMCLCLE  112 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~---------~~~v~~~~  112 (331)
                      .-.|+||++.+..  +..+.-.| +.+-.|.|+.+     ..|++...+|.+ ++++......         ...|..+.
T Consensus        63 ~~~I~If~~sG~l--L~~~~w~~-~~lI~mgWs~~-----eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~  134 (829)
T KOG2280|consen   63 RPYIRIFNISGQL--LGRILWKH-GELIGMGWSDD-----EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECR  134 (829)
T ss_pred             ceeEEEEeccccc--hHHHHhcC-CCeeeecccCC-----ceEEEEeccceEEEeecchhhhcccccccccccCceeEEE
Confidence            3458888877763  44442223 37889999987     367778899999 7776553321         22344444


Q ss_pred             EcCCCCeEEEEecCCeEEEEE-ccccceeeeeeeecccceeEEEeeCCCC--CcEEEEEcCCCeEEEEEccCCCc-eeee
Q 020107          113 WNPSATSITVGLSDGSVSIVS-VVESQLEVLQQWKAHEFELWATSFDVHQ--PHMVYTGSDDCKFSGWDIRESPF-KLAF  188 (331)
Q Consensus       113 ~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~  188 (331)
                      +..+|  +++-..+|.+.+-. .+..........+....+-.|-...+..  ...++-....-...++-...... ...+
T Consensus       135 ~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  135 FFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL  212 (829)
T ss_pred             EecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence            44444  44444455554433 3221111111111111111222211111  11222111000112222222211 1112


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  251 (331)
                      ..   ....+..+..+| +..+|+--..+|.|.+-+.... +.+.+.......+...++|..+
T Consensus       213 ~~---~~~~~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~-~~lce~~~~~~~~p~qm~Wcgn  270 (829)
T KOG2280|consen  213 SW---PNSSVVKISVSP-NRRFLALYTETGKIWVVSIDLS-QILCEFNCTDHDPPKQMAWCGN  270 (829)
T ss_pred             CC---CCceEEEEEEcC-CcceEEEEecCCcEEEEecchh-hhhhccCCCCCCchHhceeecC
Confidence            21   235678899999 8999999999999999888763 4444422233344447888776

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.04  E-value=3.1  Score=29.28  Aligned_cols=114  Identities=5%  Similarity=-0.113  Sum_probs=68.6

Q ss_pred             EEEecCCCCEEEEEecCCeEEEEEecCCC-------CCceeeeeecCCceEEEEECC---CCCCeEEEEEecCcEEEEEE
Q 020107          201 IASIPSDSNTLLTGSYDEYLRVWDVRSIS-------KPVNETSVCLGGGVWRIKHHP---FIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       201 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~  270 (331)
                      -.|.. ....|+.++.-|+|.|++.....       .++.  +......|++++-.+   +...-++..|+...+..|++
T Consensus         4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~--~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV   80 (136)
T PF14781_consen    4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDIS--FLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV   80 (136)
T ss_pred             EEeCC-CceeEEEEecCCEEEEECCCccccccccccCcee--EEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence            34555 44578888888999999876432       2233  356677888876444   33355666667788899999


Q ss_pred             cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .+...-..+   .-.+.|.++.+-.-+.     ....+++.||  +..|.=+|.+-.
T Consensus        81 ~~N~d~Fyk---e~~DGvn~i~~g~~~~-----~~~~l~ivGG--ncsi~Gfd~~G~  127 (136)
T PF14781_consen   81 ENNSDLFYK---EVPDGVNAIVIGKLGD-----IPSPLVIVGG--NCSIQGFDYEGN  127 (136)
T ss_pred             ccCchhhhh---hCccceeEEEEEecCC-----CCCcEEEECc--eEEEEEeCCCCc
Confidence            875322222   2234566665533221     1125667666  777777665543

>PRK13684 Ycf48-like protein; Provisional

Probab=91.48  E-value=7.7  Score=32.67  Aligned_cols=221  Identities=7%  Similarity=-0.048  Sum_probs=104.1

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE--------EEecCCCcc--cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL--------LRDITGEKI--SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i--------iw~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  135 (331)
                      ...+.+|.|...    ..-++++. +|.+        -|.......  ....+.++.|.++ ..+++ +..|.|..  .+
T Consensus        45 ~~~l~~v~F~d~----~~g~avG~-~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~--S~  115 (334)
T PRK13684         45 EANLLDIAFTDP----NHGWLVGS-NRTLLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH--TT  115 (334)
T ss_pred             CCceEEEEEeCC----CcEEEEEC-CCEEEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE--EC
Confidence            457899999855    55666665 5655        455433222  2334677887643 33444 45555433  33


Q ss_pred             c--cceeeeee---eecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107          136 E--SQLEVLQQ---WKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       136 ~--~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                      .  ..++.+..   +..+.  ....+..+  ...++. +..|.|..= ...++.=..+..  .-...+..+.+.| ++.+
T Consensus       116 DgG~tW~~~~~~~~~~~~~--~~i~~~~~--~~~~~~-g~~G~i~~S-~DgG~tW~~~~~--~~~g~~~~i~~~~-~g~~  186 (334)
T PRK13684        116 DGGKNWTRIPLSEKLPGSP--YLITALGP--GTAEMA-TNVGAIYRT-TDGGKNWEALVE--DAAGVVRNLRRSP-DGKY  186 (334)
T ss_pred             CCCCCCeEccCCcCCCCCc--eEEEEECC--Ccceee-eccceEEEE-CCCCCCceeCcC--CCcceEEEEEECC-CCeE
Confidence            2  12322211   11221  22222222  223333 334444221 122222111111  1245688999998 7766


Q ss_pred             EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec----CCc
Q 020107          211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK----HGS  286 (331)
Q Consensus       211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~  286 (331)
                      ++++. .|.+.. ..+...+........-...++.+.+.+++  .+++.+..+. .+.. ....+..-.....    ...
T Consensus       187 v~~g~-~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g--~~~~vg~~G~-~~~~-s~d~G~sW~~~~~~~~~~~~  260 (334)
T PRK13684        187 VAVSS-RGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDG--NLWMLARGGQ-IRFN-DPDDLESWSKPIIPEITNGY  260 (334)
T ss_pred             EEEeC-CceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCC--CEEEEecCCE-EEEc-cCCCCCccccccCCcccccc
Confidence            66654 454432 11222232333223445678999999984  3444444443 2222 1221222221111    123


Q ss_pred             ceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107          287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI  321 (331)
Q Consensus       287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i  321 (331)
                      .+.++.+.+++         ..++ ++ .+|.|..
T Consensus       261 ~l~~v~~~~~~---------~~~~-~G-~~G~v~~  284 (334)
T PRK13684        261 GYLDLAYRTPG---------EIWA-GG-GNGTLLV  284 (334)
T ss_pred             ceeeEEEcCCC---------CEEE-Ec-CCCeEEE
Confidence            57788888876         4554 44 5776653

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.43  E-value=0.3  Score=45.16  Aligned_cols=191  Identities=9%  Similarity=-0.039  Sum_probs=104.5

Q ss_pred             CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC--CCceeeeec--ccCCCcceEEE
Q 020107          126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE--SPFKLAFQN--SKIHKMGVCCI  201 (331)
Q Consensus       126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~--~~~~~~~v~~~  201 (331)
                      .+.+++-+....-. .-..+++..+.+-.+.|...+...+.  -.=|.+.+||+.-  |+....+..  .......+.-|
T Consensus       110 ~~~vrvaN~~~sm~-~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V  186 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMR-HNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV  186 (1283)
T ss_pred             hhhhhhccCcchhH-HHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence            45677766654211 01223455667777777532322222  3346788998863  333222221  12234556677


Q ss_pred             EEecC--CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEE-----------EECCCCCCeEEEEEecCcEEEE
Q 020107          202 ASIPS--DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRI-----------KHHPFIPGLVLAACMHNGFAVV  268 (331)
Q Consensus       202 ~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~~~~~~~~~~~~~~~  268 (331)
                      .|+|.  +.-++..+-.++.|++..+....+.+   +..|...+..+           ..+||| ..+++.+.++.++.|
T Consensus       187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l---~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  187 SWCPIAVNKVYICYGLKGGEIRLLNINRALRSL---FRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFY  262 (1283)
T ss_pred             eecccccccceeeeccCCCceeEeeechHHHHH---HHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCcccee
Confidence            77764  34566667778899988877643322   23476665543           368887 778888888888888


Q ss_pred             EEcCcc---cceeEEeecCCc-ceeeeeecCCCCccccccc---CcEEEEeecCCCeEEEEcCCC
Q 020107          269 KVGGEK---AEVLETYAKHGS-LAYGADWQRGRSSLEGKRK---NSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       269 ~~~~~~---~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~---~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      .+.-..   .+++...+.|.+ +-.+.-+.....   ...+   =.++++++.....+++|.-..
T Consensus       263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~---~~v~i~~w~~~Itttd~nre~k~w~~a~  324 (1283)
T KOG1916|consen  263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEI---LVVSIGKWVLRITTTDVNREEKFWAEAP  324 (1283)
T ss_pred             eeeeeccccHhhhhccCCCCCCCceeeeeccccc---cCCccceeEEEEecccCCcceeEeeccc
Confidence            775432   455666666663 222222322210   0000   034555552556789997543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.05  E-value=1.5  Score=39.68  Aligned_cols=74  Identities=12%  Similarity=0.170  Sum_probs=43.7

Q ss_pred             CCCCeEEEEecCCeEEEEEccc----cceeeeeeeec--------------------ccceeEEEeeCC---CCCcEEEE
Q 020107          115 PSATSITVGLSDGSVSIVSVVE----SQLEVLQQWKA--------------------HEFELWATSFDV---HQPHMVYT  167 (331)
Q Consensus       115 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~--------------------~~~~v~~~~~~~---~~~~~l~~  167 (331)
                      ++...++++..||.+.......    +..-....+..                    ....+..+++++   .+..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667889999999998887764    11000000000                    112344455543   25678999


Q ss_pred             EcCCCeEEEEEccCCCceeee
Q 020107          168 GSDDCKFSGWDIRESPFKLAF  188 (331)
Q Consensus       168 ~~~dg~i~i~d~~~~~~~~~~  188 (331)
                      .+.|+.+|+||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999885544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.81  E-value=12  Score=36.94  Aligned_cols=141  Identities=11%  Similarity=0.049  Sum_probs=82.8

Q ss_pred             cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe-cC------CCCEEEEEecCCeEEEEEecCCCCC-----ceee-
Q 020107          169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI-PS------DSNTLLTGSYDEYLRVWDVRSISKP-----VNET-  235 (331)
Q Consensus       169 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~------~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~-  235 (331)
                      +.|..+.+|+..++.....+..   -...|..|..- |-      .=++++.-+.--.|.++-+...+.+     .... 
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~---~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~  172 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDG---LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF  172 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccc---hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence            3588999999998766666655   44455555432 20      1123333333344555544322111     1110 


Q ss_pred             -eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC--cc---------------------cceeEEeecCCcceeee
Q 020107          236 -SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG--EK---------------------AEVLETYAKHGSLAYGA  291 (331)
Q Consensus       236 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------------~~~~~~~~~h~~~v~~~  291 (331)
                       ....+..|.++....+  +.++.+|.+++  +|.+.-  ..                     +..+.....+.++|..+
T Consensus       173 ~i~~dg~~V~~I~~t~n--GRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi  248 (1311)
T KOG1900|consen  173 KISVDGVSVNCITYTEN--GRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI  248 (1311)
T ss_pred             eeecCCceEEEEEeccC--CcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee
Confidence             1122456888886666  67777778887  555421  11                     12112122567789999


Q ss_pred             eecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ......         +.+.+-+ +.++|++|++..
T Consensus       249 ~ID~SR---------~IlY~ls-ek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  249 TIDNSR---------NILYVLS-EKGTVSAYDIGG  273 (1311)
T ss_pred             Eecccc---------ceeeeec-cCceEEEEEccC
Confidence            888887         6888988 999999999976

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.75  E-value=8.1  Score=31.60  Aligned_cols=235  Identities=11%  Similarity=0.044  Sum_probs=121.1

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccC-----cccceEEeEee-----ecCcEeEEEEcCCCCC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNA-----EEKNLELLYRM-----DTAGIFDIKWSPVGGN   80 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~-----~~~~~~~~~~~-----~~~~v~~~~~~~~~~~   80 (331)
                      ....|+++|.++  -+++..           ..+...+||...     ...++......     .....+.+.|+....-
T Consensus        24 N~WGia~~p~~~--~WVadn-----------gT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F   90 (336)
T TIGR03118        24 NAWGLSYRPGGP--FWVANT-----------GTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTF   90 (336)
T ss_pred             ccceeEecCCCC--EEEecC-----------CcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCce
Confidence            345688888774  344444           488999999872     12123322221     1235778888755110


Q ss_pred             --------CCCeEEEEcCCccE-EEecCCCcc------------cCccE-EEEEEcC--CCCeEEEEec-CCeEEEEEcc
Q 020107           81 --------AGPFLAQADADGGL-LRDITGEKI------------SSSMC-LCLEWNP--SATSITVGLS-DGSVSIVSVV  135 (331)
Q Consensus        81 --------~~~~l~~~~~dg~i-iw~~~~~~~------------~~~~v-~~~~~~~--~~~~l~~~~~-dg~i~i~d~~  135 (331)
                              ....++.+++||+| -|...-...            ....| ..+++..  .+.+|..+.. .++|.++|-.
T Consensus        91 ~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118        91 VVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             EEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence                    01246778899999 777422111            01222 2344432  3455655543 7888888754


Q ss_pred             ccceeeeeeeec----------------ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceE
Q 020107          136 ESQLEVLQQWKA----------------HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC  199 (331)
Q Consensus       136 ~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  199 (331)
                      -.+...-..+..                ..--|+-..-.+ +.+.=+.+..-|.|-+||+. ++.++.+.. .+.-....
T Consensus       171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~-G~l~~r~as-~g~LNaPW  247 (336)
T TIGR03118       171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLN-GQLLRRVAS-SGRLNAPW  247 (336)
T ss_pred             cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCC-CcEEEEecc-CCcccCCc
Confidence            322110000100                001111111122 12223334455799999987 455555543 22334456


Q ss_pred             EEEEecC-----CCCEEEEEecCCeEEEEEecCCCCCceeeeeecC-----CceEEEEECCC-----CCCeEEEEEec
Q 020107          200 CIASIPS-----DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG-----GGVWRIKHHPF-----IPGLVLAACMH  262 (331)
Q Consensus       200 ~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~-----~~~~~~~~~~~  262 (331)
                      .|+..|.     .+.+|+----||+|..||..++. -+-.+.....     ..++.|+|...     .+.++.+++-+
T Consensus       248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~-~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~  324 (336)
T TIGR03118       248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA-QLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPD  324 (336)
T ss_pred             eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc-eeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCC
Confidence            6666552     46677776789999999998753 2222112222     24677888762     12455555543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.71  E-value=2.2  Score=33.33  Aligned_cols=68  Identities=7%  Similarity=-0.018  Sum_probs=44.1

Q ss_pred             EcCCCCeEEEEecCCeEEEEEccccceeeee----e-ee-------cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc
Q 020107          113 WNPSATSITVGLSDGSVSIVSVVESQLEVLQ----Q-WK-------AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR  180 (331)
Q Consensus       113 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~-~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  180 (331)
                      +..++++|++-+.+|.+++||+.+++.....    . +.       .....|..+.++. ++.-+++-+ +|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccc
Confidence            3447788999999999999999986531111    0 11       2345677777774 555555554 4677777766


Q ss_pred             CC
Q 020107          181 ES  182 (331)
Q Consensus       181 ~~  182 (331)
                      -+
T Consensus        96 L~   97 (219)
T PF07569_consen   96 LG   97 (219)
T ss_pred             cc
Confidence            44

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.58  E-value=3.8  Score=30.67  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=25.5

Q ss_pred             cCccEEEEEEcCCC------CeEEEEecCCeEEEEEcc
Q 020107          104 SSSMCLCLEWNPSA------TSITVGLSDGSVSIVSVV  135 (331)
Q Consensus       104 ~~~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~~  135 (331)
                      ....+..++|+|.|      -.|++-+.+|.|.+|...
T Consensus        84 s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   84 SSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            34578999999954      258888889999999876

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.57  E-value=2.6  Score=32.97  Aligned_cols=72  Identities=8%  Similarity=0.008  Sum_probs=44.6

Q ss_pred             CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee-----eee-------ecCCceEEEEECCCCCCeEEEEEec
Q 020107          195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE-----TSV-------CLGGGVWRIKHHPFIPGLVLAACMH  262 (331)
Q Consensus       195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~  262 (331)
                      ..++..+..   .+.+|++.+.+|.+++||+.+.+..+..     ++.       .....|..+..+.+|  ..++.-++
T Consensus        12 gs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G--~PiV~lsn   86 (219)
T PF07569_consen   12 GSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG--VPIVTLSN   86 (219)
T ss_pred             CCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC--CEEEEEeC
Confidence            344544543   6788999999999999999986432221     111       344567888888664  44444455


Q ss_pred             CcEEEEEEc
Q 020107          263 NGFAVVKVG  271 (331)
Q Consensus       263 ~~~~~~~~~  271 (331)
                      +....|+..
T Consensus        87 g~~y~y~~~   95 (219)
T PF07569_consen   87 GDSYSYSPD   95 (219)
T ss_pred             CCEEEeccc
Confidence            555555543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.07  E-value=10  Score=31.83  Aligned_cols=69  Identities=10%  Similarity=-0.002  Sum_probs=39.3

Q ss_pred             CcceEEEEEecC------CCCEEEEEecCCeEEEEEecCCCCCcee--eeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107          195 KMGVCCIASIPS------DSNTLLTGSYDEYLRVWDVRSISKPVNE--TSVCLGGGVWRIKHHPFIPGLVLAACMHNG  264 (331)
Q Consensus       195 ~~~v~~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  264 (331)
                      ...+..+.|-+.      .+.+|++.-..+.|....+.........  ++.....++..+++.|++ .++++...++.
T Consensus       252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG-~Lyv~~d~~G~  328 (331)
T PF07995_consen  252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG-ALYVSDDSDGK  328 (331)
T ss_dssp             T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS-EEEEEE-TTTT
T ss_pred             ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC-eEEEEECCCCe
Confidence            345666776631      3446666656678888888754332222  112344579999999996 56666655666

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.00  E-value=7.3  Score=29.90  Aligned_cols=176  Identities=8%  Similarity=0.017  Sum_probs=90.0

Q ss_pred             CCCeEEEEec--CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC
Q 020107          116 SATSITVGLS--DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI  193 (331)
Q Consensus       116 ~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  193 (331)
                      ++.++.+.+.  ...|++||+++++......+..  ..+..--............-.+|.-..+|.++-++...+..   
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y---  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY---  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc---
Confidence            3444555544  4579999999876533333331  11111111111223333445688889999998877666664   


Q ss_pred             CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc---eEEEEECCCCCCeEEEE-EecCcEEEEE
Q 020107          194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG---VWRIKHHPFIPGLVLAA-CMHNGFAVVK  269 (331)
Q Consensus       194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~-~~~~~~~~~~  269 (331)
                       .+.=..++.   ++..|..+....+++.-|..+....-.........+   ++.+.|-.   +.+.+. -..+.  +.+
T Consensus       130 -~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd---G~lyANVw~t~~--I~r  200 (262)
T COG3823         130 -EGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD---GELYANVWQTTR--IAR  200 (262)
T ss_pred             -CCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeec---cEEEEeeeeecc--eEE
Confidence             444455554   344455555556677767665422111111122222   23344443   233332 22333  444


Q ss_pred             EcCcccceeEEee------------cCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107          270 VGGEKAEVLETYA------------KHGSLAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       270 ~~~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                      +...+++.+..+.            .|....+++++.|+..        ++++||-
T Consensus       201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~--------r~~iTGK  248 (262)
T COG3823         201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQD--------RFLITGK  248 (262)
T ss_pred             EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCC--------eEEEecC
Confidence            4444444443332            3455678899999885        6777763

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.78  E-value=13  Score=32.37  Aligned_cols=139  Identities=16%  Similarity=0.144  Sum_probs=84.0

Q ss_pred             CCeEEEEcCCccE-EEecCCCccc----------CccEEEEEEcC----CCC-eEEEEecCCeEEEEEccccc-------
Q 020107           82 GPFLAQADADGGL-LRDITGEKIS----------SSMCLCLEWNP----SAT-SITVGLSDGSVSIVSVVESQ-------  138 (331)
Q Consensus        82 ~~~l~~~~~dg~i-iw~~~~~~~~----------~~~v~~~~~~~----~~~-~l~~~~~dg~i~i~d~~~~~-------  138 (331)
                      ...|++|+..|.+ |+........          +.+|..++.-+    ... .||+ -.-..+.+|.+....       
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            6799999999999 8877654432          56777776432    222 3444 455778888874311       


Q ss_pred             eeeeeeeeccc--ceeEEEeeCCC----CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107          139 LEVLQQWKAHE--FELWATSFDVH----QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL  212 (331)
Q Consensus       139 ~~~~~~~~~~~--~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  212 (331)
                      .-.+..+..|.  .....+++-|.    +..++..-+.||.+.+++-+.-.....+..    ---...+.|.| ..+.|+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~----~llPgPl~Y~~-~tDsfv  190 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD----FLLPGPLCYCP-RTDSFV  190 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC----CCCCcCeEEee-cCCEEE
Confidence            11122222232  12233333222    247889999999999999775432222221    22234467788 778899


Q ss_pred             EEecCCeEEEEEec
Q 020107          213 TGSYDEYLRVWDVR  226 (331)
Q Consensus       213 ~~~~d~~i~iwd~~  226 (331)
                      +++.+..+..|...
T Consensus       191 t~sss~~l~~Yky~  204 (418)
T PF14727_consen  191 TASSSWTLECYKYQ  204 (418)
T ss_pred             EecCceeEEEecHH
Confidence            99988999998764

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.65  E-value=7.8  Score=37.87  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             ecCCCCEEEEEecCCeEEEEEecCC
Q 020107          204 IPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       204 ~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      .+ ++..++++..||.+.+||...+
T Consensus       243 ~~-~~~~~v~~h~Dgs~~fWd~s~g  266 (993)
T KOG1983|consen  243 SR-DGSHFVSYHTDGSYAFWDVSSG  266 (993)
T ss_pred             cc-CCceEEEEEecCCEEeeecCCC
Confidence            56 7899999999999999999875

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=89.50  E-value=16  Score=33.00  Aligned_cols=159  Identities=13%  Similarity=0.044  Sum_probs=95.3

Q ss_pred             ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc--cCCCcceEEEEEecCCCCEEEEEecC--------
Q 020107          148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS--KIHKMGVCCIASIPSDSNTLLTGSYD--------  217 (331)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d--------  217 (331)
                      ....|.++.|.- +..+++|=-.---+.+.|+..++...++-..  ++...     -.||.+.++|+--|.|        
T Consensus       324 ~gE~IysvRF~G-d~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~-----YLHP~~e~~LlGiG~~~~~~~~~~  397 (521)
T PF09826_consen  324 PGERIYSVRFMG-DRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSD-----YLHPYDENHLLGIGKDTDEDEGTG  397 (521)
T ss_pred             CCceEEEEEEeC-CeEEEEEEeecCceEEEECCCCCCCceeeEEECccchh-----ceeECCCCeEEEEcccCccccccc
Confidence            457899999985 6677777766667889999887654443321  22222     3456555565555432        


Q ss_pred             ----CeEEEEEecCCCCCceeeeeec--CC-------ceEEEEECCCCCCeEEEEEe-------cCcEEEEEEc-Ccccc
Q 020107          218 ----EYLRVWDVRSISKPVNETSVCL--GG-------GVWRIKHHPFIPGLVLAACM-------HNGFAVVKVG-GEKAE  276 (331)
Q Consensus       218 ----~~i~iwd~~~~~~~~~~~~~~~--~~-------~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~  276 (331)
                          =+|.+||+.....|........  .+       .-.++.|.+.. ++++.--.       ..+..++++. ...-.
T Consensus       398 ~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~-~ll~~Pv~~~~~~~~~~g~~v~~i~~~~g~~  476 (521)
T PF09826_consen  398 WTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEK-NLLAFPVSSSYGYFNFQGAYVFSIDPEDGFT  476 (521)
T ss_pred             ccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCC-CEEEEEEEEccCccccceEEEEEEeCCCCeE
Confidence                2477899998766655421111  11       13457777764 44333222       2567788888 33233


Q ss_pred             eeEEeecCCc-------ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          277 VLETYAKHGS-------LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       277 ~~~~~~~h~~-------~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ....+. |..       .+....+..+           .|.+.+  ++.|+++++++.
T Consensus       477 ~~g~i~-h~~~~~~~~~~~~R~lyi~d-----------~lYtvS--~~~i~~~~l~t~  520 (521)
T PF09826_consen  477 LKGKIT-HPSPDYYYSYQIQRSLYIGD-----------TLYTVS--DNGIKAYDLNTL  520 (521)
T ss_pred             EEEEEE-ccCcccccccceeEEEEECC-----------EEEEEE--CCEEEEEehHhc
Confidence            344443 433       2555555554           677777  889999998764

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=88.51  E-value=12  Score=30.23  Aligned_cols=201  Identities=12%  Similarity=-0.022  Sum_probs=112.0

Q ss_pred             cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107          107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL  186 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  186 (331)
                      .-..++-.|||..-+++...|.|--.|..+++.+  ..-.+....-..+...| ++..-++-+.. .|.-.|.++.. ..
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~--~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~e-vt  137 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVE--TYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLE-VT  137 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceE--EEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccc-eE
Confidence            3456777888888888888888888888888652  22223344456677777 44444443222 56666666554 44


Q ss_pred             eeecccC-CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107          187 AFQNSKI-HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF  265 (331)
Q Consensus       187 ~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  265 (331)
                      .|..... -........|.+ .+++-.++.. |.---.|...  ..+..+........+.|+-.|++ ...+++-..+.+
T Consensus       138 ~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~-G~yGrLdPa~--~~i~vfpaPqG~gpyGi~atpdG-svwyaslagnai  212 (353)
T COG4257         138 RFPLPLEHADANLETAVFDP-WGNLWFTGQI-GAYGRLDPAR--NVISVFPAPQGGGPYGICATPDG-SVWYASLAGNAI  212 (353)
T ss_pred             EeecccccCCCcccceeeCC-CccEEEeecc-ccceecCccc--CceeeeccCCCCCCcceEECCCC-cEEEEeccccce
Confidence            4444222 245678888999 8888888752 2221112221  22333223455567788899997 666666566664


Q ss_pred             EEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          266 AVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ..++......+.+..-.........+--+|.+         +.-+|-. ..+.+..+|..+.
T Consensus       213 aridp~~~~aev~p~P~~~~~gsRriwsdpig---------~~wittw-g~g~l~rfdPs~~  264 (353)
T COG4257         213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG---------RAWITTW-GTGSLHRFDPSVT  264 (353)
T ss_pred             EEcccccCCcceecCCCcccccccccccCccC---------cEEEecc-CCceeeEeCcccc
Confidence            33433332122222112212223334444554         4555554 5777777776554

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.48  E-value=17  Score=32.24  Aligned_cols=77  Identities=13%  Similarity=0.072  Sum_probs=49.2

Q ss_pred             ceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc---------CCCceee---------eecccCCCcceEEEEEecCC--CC
Q 020107          150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIR---------ESPFKLA---------FQNSKIHKMGVCCIASIPSD--SN  209 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~---------~~~~~~~~~~v~~~~~~~~~--~~  209 (331)
                      -.|..+..++ .+..++..+.+|.+.++=.+         .++....         +.. ....-.+..++|+|..  ..
T Consensus       104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft-ss~~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  104 FEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT-SSTSLTLKQAAWHPSSILDP  181 (741)
T ss_pred             EEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec-cCCceeeeeccccCCccCCc
Confidence            4577788887 67777777778876655422         1211110         001 1122346788999954  56


Q ss_pred             EEEEEecCCeEEEEEecCC
Q 020107          210 TLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       210 ~l~~~~~d~~i~iwd~~~~  228 (331)
                      .|..-+.|..||+||+...
T Consensus       182 hL~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             eEEEEecCcEEEEEecCCc
Confidence            7888889999999999865

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.46  E-value=2.8  Score=38.07  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=20.0

Q ss_pred             cEEEEeecCCCeEEEEcCCCccc
Q 020107          307 SLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       307 ~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      .+|++.+ .|++||+||+.++..
T Consensus       231 ~~l~tl~-~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  231 TFLFTLS-RDHTLRIWSLETGQC  252 (547)
T ss_dssp             TEEEEEE-TTSEEEEEETTTTCE
T ss_pred             CEEEEEe-CCCeEEEEECCCCeE
Confidence            6899999 999999999999865

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=88.06  E-value=13  Score=30.32  Aligned_cols=98  Identities=12%  Similarity=0.194  Sum_probs=59.2

Q ss_pred             CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc------CCCeEEEEEccCCCceeeeec-c-cCCCcce
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS------DDCKFSGWDIRESPFKLAFQN-S-KIHKMGV  198 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-~-~~~~~~v  198 (331)
                      ..|++||....++....  .+-.+.|+++.|.. +..+++.|.      ....+..||..+..-. .+.. . ..-.++|
T Consensus        16 ~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv   91 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPG--NGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPV   91 (281)
T ss_pred             CEEEEEECCCCEeecCC--CCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcE
Confidence            46899999987773332  23467899999984 666776664      4567888998876421 1211 0 1124678


Q ss_pred             EEEEEecCCCC-EEEEEe-cC--CeEEEEEecCC
Q 020107          199 CCIASIPSDSN-TLLTGS-YD--EYLRVWDVRSI  228 (331)
Q Consensus       199 ~~~~~~~~~~~-~l~~~~-~d--~~i~iwd~~~~  228 (331)
                      ..+.+...+.. +.+.|. .+  ..|..||=.+.
T Consensus        92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W  125 (281)
T PF12768_consen   92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSW  125 (281)
T ss_pred             EEEEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence            88887654444 444443 23  34666765543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.98  E-value=13  Score=32.67  Aligned_cols=144  Identities=15%  Similarity=0.104  Sum_probs=86.9

Q ss_pred             CCcEE-EEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC------CCEEEEEecCCeEEEEEecCCCCCce
Q 020107          161 QPHMV-YTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD------SNTLLTGSYDEYLRVWDVRSISKPVN  233 (331)
Q Consensus       161 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~  233 (331)
                      +.++| ..|+....++-.|+..++.+..+..   |..-  -+.|.|..      ...-++|-.+..|.-.|.|-....+.
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~---~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDL---KDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeec---CCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            44444 4456667888899999999889987   5554  57777731      12234455566676667776433332


Q ss_pred             eeeeecCCceEEEEECC---CCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEE
Q 020107          234 ETSVCLGGGVWRIKHHP---FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVA  310 (331)
Q Consensus       234 ~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~  310 (331)
                      .  .....-++.-.|+.   ...+++++++..+.|++++--..  +....+.+-...|-.+....+|.        .+|+
T Consensus       553 v--~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~--rAKtalP~lG~aIk~idvta~Gk--------~ila  620 (776)
T COG5167         553 V--VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK--RAKTALPGLGDAIKHIDVTANGK--------HILA  620 (776)
T ss_pred             e--eeehhccccccccccccccCceEEEecCCCceeeehhhcc--hhhhcCcccccceeeeEeecCCc--------EEEE
Confidence            2  22222222222322   12278888888888888876542  22334556677889999999995        5566


Q ss_pred             EeecCCCeEEEEcC
Q 020107          311 TCSFYDRLLRIWMP  324 (331)
Q Consensus       311 s~~~~d~~i~iW~~  324 (331)
                      ||   ...|.+-|+
T Consensus       621 TC---k~yllL~d~  631 (776)
T COG5167         621 TC---KNYLLLTDV  631 (776)
T ss_pred             ee---cceEEEEec
Confidence            65   344444443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.93  E-value=6.1  Score=29.56  Aligned_cols=33  Identities=3%  Similarity=0.036  Sum_probs=26.6

Q ss_pred             ceeEEEeeCCC-----CCcEEEEEcCCCeEEEEEccCC
Q 020107          150 FELWATSFDVH-----QPHMVYTGSDDCKFSGWDIRES  182 (331)
Q Consensus       150 ~~v~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~  182 (331)
                      ..+..++|+|.     .+.+|++.+.++.|.||.....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            37889999983     2468899999999999987643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.86  E-value=14  Score=30.34  Aligned_cols=212  Identities=15%  Similarity=0.140  Sum_probs=109.8

Q ss_pred             EEEEEEcCCCCeEEEEecCCeEEEEEccc-----cceeeeeeeec-----ccceeEEEeeCCC-----------CCcEEE
Q 020107          108 CLCLEWNPSATSITVGLSDGSVSIVSVVE-----SQLEVLQQWKA-----HEFELWATSFDVH-----------QPHMVY  166 (331)
Q Consensus       108 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~-----~~~~v~~~~~~~~-----------~~~~l~  166 (331)
                      -+.|+++|.+..-++....+...+||...     -....+..+..     .....+.+.|+..           ....++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            45788888888777777788888998861     11112223321     1235677777641           113467


Q ss_pred             EEcCCCeEEEEEccCCCc---eeeeecccCCCcce-EEEEEecC-CCCEEEEE-ecCCeEEEEEecCCCCCceeeeeecC
Q 020107          167 TGSDDCKFSGWDIRESPF---KLAFQNSKIHKMGV-CCIASIPS-DSNTLLTG-SYDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       167 ~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v-~~~~~~~~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      .+++||+|.-|...-...   ...+.........| ..+++... .+++|+.. -..++|.+||-.-.+..+.   ....
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~---g~F~  181 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP---GSFI  181 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC---CCcc
Confidence            788999999998643322   11111101112333 34454431 24455444 4678999998654211110   0111


Q ss_pred             Cc-------eEEEEECCCCCCeEEEEEecC----------cEEEEEEcCcccceeEEee--cCCcceeeeeecCCCCccc
Q 020107          241 GG-------VWRIKHHPFIPGLVLAACMHN----------GFAVVKVGGEKAEVLETYA--KHGSLAYGADWQRGRSSLE  301 (331)
Q Consensus       241 ~~-------v~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~  301 (331)
                      .+       ...|+--..  .++++-...+          +.-.+++.+..+++++++.  +.-..-+.++..|..   .
T Consensus       182 DP~iPagyAPFnIqnig~--~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~---F  256 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGG--TLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPES---F  256 (336)
T ss_pred             CCCCCCCCCCcceEEECC--eEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhh---h
Confidence            11       111111111  2222222211          1115555555578888774  344566778876642   1


Q ss_pred             ccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          302 GKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       302 ~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +...+.+|+ +-+-||+|..+|..++.
T Consensus       257 G~~sg~lLV-GNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       257 GSLSGALLV-GNFGDGTINAYDPQSGA  282 (336)
T ss_pred             CCCCCCeEE-eecCCceeEEecCCCCc
Confidence            112224444 44479999999998765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.70  E-value=26  Score=33.43  Aligned_cols=73  Identities=8%  Similarity=-0.017  Sum_probs=47.0

Q ss_pred             eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      .-..+.|.+ +.+.|+.++ ...+.++|+++......+.. ......|..+.-+|.+..+++.-. ...|...|...
T Consensus       205 ~w~rI~W~~-~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~-~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  205 NWKRILWVS-DSNRLLVCN-RSKLMLIDFESNWQTEYLVT-AKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             cceeeEecC-CCCEEEEEc-CCceEEEECCCCCccchhcc-CCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            345778876 556666665 46788999998765442222 225677888888884344444443 26688888877

These proteins are found in fungi.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.28  E-value=20  Score=30.62  Aligned_cols=193  Identities=10%  Similarity=0.053  Sum_probs=98.7

Q ss_pred             CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE------EeeCCCCCc--EEEEEcCC---CeEEEEEccCCC-
Q 020107          116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA------TSFDVHQPH--MVYTGSDD---CKFSGWDIRESP-  183 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~--~l~~~~~d---g~i~i~d~~~~~-  183 (331)
                      ...+++....++-+.+||+.....   ..+..  +.++.      +.+.  +..  ++++..++   ..|++|.+.... 
T Consensus        67 ~kSlIigTdK~~GL~VYdL~Gk~l---q~~~~--Gr~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f~id~~~g  139 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDGKEL---QSLPV--GRPNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLFRIDPDTG  139 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS-EE---EEE-S--S-EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred             ccceEEEEeCCCCEEEEcCCCcEE---EeecC--CCcceeeeecceecC--CceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence            345667777788899999986543   33321  12222      2332  112  23333332   479999886321 


Q ss_pred             ceeeeecc----cCCCcceEEEEE--ecCCCC-EEEEEecCCeEEEEEecCCCC------CceeeeeecCCceEEEEECC
Q 020107          184 FKLAFQNS----KIHKMGVCCIAS--IPSDSN-TLLTGSYDEYLRVWDVRSISK------PVNETSVCLGGGVWRIKHHP  250 (331)
Q Consensus       184 ~~~~~~~~----~~~~~~v~~~~~--~~~~~~-~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~  250 (331)
                      .+..+...    ......++.+++  +|.++. ++++...+|.+.-|-+.....      ++.+  ....+.+..+....
T Consensus       140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~--f~~~sQ~EGCVVDD  217 (381)
T PF02333_consen  140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVRE--FKVGSQPEGCVVDD  217 (381)
T ss_dssp             EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEE--EE-SS-EEEEEEET
T ss_pred             cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEE--ecCCCcceEEEEec
Confidence            12222110    001234666665  343343 667778899999888863222      2232  34556788888877


Q ss_pred             CCCCeEEEEEecCcEEEEEEcCcc-----cceeEEeec--CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107          251 FIPGLVLAACMHNGFAVVKVGGEK-----AEVLETYAK--HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~  323 (331)
                      .. +.++.+-.+-+  ||.+.-..     ++.+....+  ...-|.+++.-....     ..+.+|+|.- .+++..+|+
T Consensus       218 e~-g~LYvgEE~~G--IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~-----g~gYLivSsQ-G~~sf~Vy~  288 (381)
T PF02333_consen  218 ET-GRLYVGEEDVG--IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD-----GKGYLIVSSQ-GDNSFAVYD  288 (381)
T ss_dssp             TT-TEEEEEETTTE--EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC-----C-EEEEEEEG-GGTEEEEEE
T ss_pred             cc-CCEEEecCccE--EEEEecCCCCCCcceeeecccccccccCccceEEEecCC-----CCeEEEEEcC-CCCeEEEEe
Confidence            65 77777766666  77765431     233333332  345677787754321     1123455554 788999999


Q ss_pred             CCC
Q 020107          324 PES  326 (331)
Q Consensus       324 ~~~  326 (331)
                      .+.
T Consensus       289 r~~  291 (381)
T PF02333_consen  289 REG  291 (381)
T ss_dssp             SST
T ss_pred             cCC
Confidence            764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=86.04  E-value=35  Score=33.14  Aligned_cols=178  Identities=14%  Similarity=0.136  Sum_probs=95.7

Q ss_pred             eEEEEEccccceeeeeeeecc--cceeEEEeeCCCCCc-EEEEEc-----------CCCeEEEEEccCCCceeeeecccC
Q 020107          128 SVSIVSVVESQLEVLQQWKAH--EFELWATSFDVHQPH-MVYTGS-----------DDCKFSGWDIRESPFKLAFQNSKI  193 (331)
Q Consensus       128 ~i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~-~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~  193 (331)
                      .|++.|..+++..+...+...  ...+..+.|+..+.. +++++.           .+|.++.|++-.......+-....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            478888877765444333322  234556667643333 333332           235567777643332222221011


Q ss_pred             CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee-ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV-CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      -...|  .+.+|..+ ++++| ....+++||+.+ ++++..... .....|..+++...   .++++...+.+..+....
T Consensus       934 ~~~~v--~Ai~~f~~-~~Lag-vG~~l~~YdlG~-K~lLRk~e~k~~p~~Is~iqt~~~---RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen  934 IPGPV--GAICPFQG-RVLAG-VGRFLRLYDLGK-KKLLRKCELKFIPNRISSIQTYGA---RIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred             CCccc--eEEeccCC-EEEEe-cccEEEEeeCCh-HHHHhhhhhccCceEEEEEeecce---EEEEeeccceEEEEEEec
Confidence            12334  45567344 55444 457899999987 344433122 23667888888764   566776777776666665


Q ss_pred             cccceeEEeec--CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          273 EKAEVLETYAK--HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       273 ~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      . .+.+..+-+  -...|+.+.+-..+          .+|.+. .=|.+.+-.+.
T Consensus      1006 ~-~n~l~~fadD~~pR~Vt~~~~lD~~----------tvagaD-rfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1006 E-DNQLIVFADDPVPRHVTALELLDYD----------TVAGAD-RFGNIAVVRIP 1048 (1205)
T ss_pred             C-CCeEEEEeCCCccceeeEEEEecCC----------ceeecc-ccCcEEEEECC
Confidence            5 344444432  23456666666554          566665 55666665543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.04  E-value=3.6  Score=21.83  Aligned_cols=30  Identities=20%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             CCCCeEEEEec-CCeEEEEEccccceeeeeeee
Q 020107          115 PSATSITVGLS-DGSVSIVSVVESQLEVLQQWK  146 (331)
Q Consensus       115 ~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~  146 (331)
                      |+++.|+++.. +++|.++|..+++.  +..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~--~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKV--IATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeE--EEEEE
Confidence            56777776664 88999999876643  44443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=85.36  E-value=24  Score=30.71  Aligned_cols=196  Identities=11%  Similarity=0.062  Sum_probs=102.3

Q ss_pred             eeecCcceeEeeecCCCCC--cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107            6 CELDGNADAVEFCPQDSYH--HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~~~--~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      ..+......+.+-|++...  +++.+=+          -||.+.+|+-+...  +...... ---.-.+.|.|.    .+
T Consensus       125 h~l~~~a~nm~~G~Fgg~~~~~~IcVQS----------~DG~L~~feqe~~~--f~~~lp~-~llPgPl~Y~~~----tD  187 (418)
T PF14727_consen  125 HSLQRTAYNMCCGPFGGVKGRDFICVQS----------MDGSLSFFEQESFA--FSRFLPD-FLLPGPLCYCPR----TD  187 (418)
T ss_pred             EecccceeEEEEEECCCCCCceEEEEEe----------cCceEEEEeCCcEE--EEEEcCC-CCCCcCeEEeec----CC
Confidence            3445556666677776433  5666665          79999999977643  2332222 111334677777    77


Q ss_pred             eEEEEcCCccE-EEecC------C---------------Ccc-------cCccEEEEE---EcCCCCeEEEEecCCeEEE
Q 020107           84 FLAQADADGGL-LRDIT------G---------------EKI-------SSSMCLCLE---WNPSATSITVGLSDGSVSI  131 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~------~---------------~~~-------~~~~v~~~~---~~~~~~~l~~~~~dg~i~i  131 (331)
                      .|++++.+..+ -+...      .               .+.       -...+..+.   ++.....+++-++ .++..
T Consensus       188 sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~  266 (418)
T PF14727_consen  188 SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFC  266 (418)
T ss_pred             EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEE
Confidence            88888888777 11110      0               000       022333333   2222223333333 45555


Q ss_pred             EEccccceeeeeeeeccccee--EEE--eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEE---Ee
Q 020107          132 VSVVESQLEVLQQWKAHEFEL--WAT--SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIA---SI  204 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~v--~~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~---~~  204 (331)
                      .+.. |.+...+.+.......  ..+  ...|.....++.++.++.+.||.=.+-    .+...- ...+| ++.   +.
T Consensus       267 l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L----~WsA~l-~~~PV-al~v~~~~  339 (418)
T PF14727_consen  267 LKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL----VWSAQL-PHVPV-ALSVANFN  339 (418)
T ss_pred             EcCC-CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE----EEecCC-CCCCE-EEEecccC
Confidence            5543 4544444443322111  112  112212235888899999999964422    232210 12222 333   23


Q ss_pred             cCCCCEEEEEecCCeEEEEEecC
Q 020107          205 PSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       205 ~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      . -...|++-+.+|.+.+-=+.+
T Consensus       340 ~-~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  340 G-LKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             C-CCceEEEEcCCCcEEEEEeCC
Confidence            3 456888999999999887766

>PLN02193 nitrile-specifier protein

Probab=85.29  E-value=27  Score=31.14  Aligned_cols=108  Identities=8%  Similarity=0.085  Sum_probs=54.3

Q ss_pred             CCCeEEEEecC-----CeEEEEEccccceeeeeeeec--ccceeEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCC
Q 020107          116 SATSITVGLSD-----GSVSIVSVVESQLEVLQQWKA--HEFELWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESP  183 (331)
Q Consensus       116 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  183 (331)
                      ++...+.|+.+     ..+..||+.+.++..+..+..  ....-.+++.  .++++++.|+.++     .+..||+.+.+
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~~~~iYv~GG~~~~~~~~~~~~yd~~t~~  305 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--DEENVYVFGGVSATARLKTLDSYNIVDKK  305 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence            44555666544     357889998877754433310  1111112222  2456777777543     46778877654


Q ss_pred             ceeeeec--ccCCCcceEEEEEecCCCCEEEEEecC----CeEEEEEecCC
Q 020107          184 FKLAFQN--SKIHKMGVCCIASIPSDSNTLLTGSYD----EYLRVWDVRSI  228 (331)
Q Consensus       184 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~  228 (331)
                      -...-..  .+.....-..+.+   ++++++.++.+    ..+.+||+.+.
T Consensus       306 W~~~~~~~~~~~~R~~~~~~~~---~gkiyviGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        306 WFHCSTPGDSFSIRGGAGLEVV---QGKVWVVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             EEeCCCCCCCCCCCCCcEEEEE---CCcEEEEECCCCCccCceEEEECCCC
Confidence            2211100  0001111112222   56677777755    45888888763

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=85.09  E-value=36  Score=32.44  Aligned_cols=108  Identities=13%  Similarity=0.133  Sum_probs=62.1

Q ss_pred             CCeEEEEecCCeEEEEEccccceeeeeeeecccc--------eeEEEeeCC---------------CCCcEEEEEcCCCe
Q 020107          117 ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF--------ELWATSFDV---------------HQPHMVYTGSDDCK  173 (331)
Q Consensus       117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------~v~~~~~~~---------------~~~~~l~~~~~dg~  173 (331)
                      +..+++++.++.|.-.|.++++.  +-.+.....        ....+++..               .....++.++.|+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~--lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~  271 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKE--KWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR  271 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE--EEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence            55677778888888888888764  222221110        011222211               12347888889999


Q ss_pred             EEEEEccCCCceeeeecccCCCcce-------------EEEEEecC-CCCEEEEEec----------CCeEEEEEecCCC
Q 020107          174 FSGWDIRESPFKLAFQNSKIHKMGV-------------CCIASIPS-DSNTLLTGSY----------DEYLRVWDVRSIS  229 (331)
Q Consensus       174 i~i~d~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~~-~~~~l~~~~~----------d~~i~iwd~~~~~  229 (331)
                      |.-.|.++++....+..    .+.|             ..+.-.|. .+..+++|+.          +|.|+-+|.++++
T Consensus       272 LiALDA~TGk~~W~fg~----~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       272 LIALDADTGKLCEDFGN----NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             EEEEECCCCCEEEEecC----CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            99999999987655432    1111             01111110 1345666642          6889999999875


Q ss_pred             C
Q 020107          230 K  230 (331)
Q Consensus       230 ~  230 (331)
                      .
T Consensus       348 l  348 (764)
T TIGR03074       348 L  348 (764)
T ss_pred             E
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.82  E-value=20  Score=29.29  Aligned_cols=119  Identities=12%  Similarity=0.061  Sum_probs=65.5

Q ss_pred             CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe------cCCeEEEEEecCCCCCceeeee----ecCC
Q 020107          172 CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS------YDEYLRVWDVRSISKPVNETSV----CLGG  241 (331)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~----~~~~  241 (331)
                      ..|++||..+.+-...-..   -.+.|++|.|.. +..+++.|.      ....+..||+.+.  .......    ...+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~ipg   89 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNG---ISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNSIPG   89 (281)
T ss_pred             CEEEEEECCCCEeecCCCC---ceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCC--eeeecCCcccccCCC
Confidence            4689999887653332222   567899999985 566666664      3456888998864  2222111    2357


Q ss_pred             ceEEEEECCCCCC-eEEEEEe-cCcEEEEEEcCcccceeEE-eecCCcceeeeeecCC
Q 020107          242 GVWRIKHHPFIPG-LVLAACM-HNGFAVVKVGGEKAEVLET-YAKHGSLAYGADWQRG  296 (331)
Q Consensus       242 ~v~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~  296 (331)
                      +|..+.+...... .++++.. .+...+......+...+.. .-+....|.++.+-|-
T Consensus        90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l  147 (281)
T PF12768_consen   90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL  147 (281)
T ss_pred             cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence            8888887544333 4444432 2333344444333333322 2222445666665554

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=84.75  E-value=27  Score=30.78  Aligned_cols=54  Identities=15%  Similarity=0.187  Sum_probs=33.0

Q ss_pred             cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee-----cccceeEEEeeCCC
Q 020107          107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK-----AHEFELWATSFDVH  160 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~v~~~~~~~~  160 (331)
                      ....|+|.|+++.|++--..|.|++++..++....+..+.     ........++++|+
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence            3467888888866655444688888876544322222111     13566789999983

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PLN02193 nitrile-specifier protein

Probab=84.39  E-value=29  Score=30.87  Aligned_cols=66  Identities=11%  Similarity=0.065  Sum_probs=38.4

Q ss_pred             CCCeEEEEecC----CeEEEEEccccceeeeeee---ecccceeEEEeeCCCCCcEEEEEcCC--------------CeE
Q 020107          116 SATSITVGLSD----GSVSIVSVVESQLEVLQQW---KAHEFELWATSFDVHQPHMVYTGSDD--------------CKF  174 (331)
Q Consensus       116 ~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i  174 (331)
                      +++..+.++.+    ..+.+||+.+.++..+...   ........++.+   ++++++.|+..              ..+
T Consensus       328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~ndv  404 (470)
T PLN02193        328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV---GKHIVIFGGEIAMDPLAHVGPGQLTDGT  404 (470)
T ss_pred             CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE---CCEEEEECCccCCccccccCccceeccE
Confidence            56666666654    4688999998877544332   111111122222   45778888753              247


Q ss_pred             EEEEccCCCc
Q 020107          175 SGWDIRESPF  184 (331)
Q Consensus       175 ~i~d~~~~~~  184 (331)
                      .++|+.+.+-
T Consensus       405 ~~~D~~t~~W  414 (470)
T PLN02193        405 FALDTETLQW  414 (470)
T ss_pred             EEEEcCcCEE
Confidence            8888876643

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=84.34  E-value=23  Score=29.68  Aligned_cols=99  Identities=17%  Similarity=0.168  Sum_probs=58.8

Q ss_pred             eeEEEeeCCCCCcEEEEEcCC------CeEEEEEccCCCceeeeecc------------cCCCcceEEEEEecCCCCEEE
Q 020107          151 ELWATSFDVHQPHMVYTGSDD------CKFSGWDIRESPFKLAFQNS------------KIHKMGVCCIASIPSDSNTLL  212 (331)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~l~  212 (331)
                      ...++++.+ ++.++++.-.+      ..|..++.. ++....+...            .......-+|+++| ++..|+
T Consensus        86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~  162 (326)
T PF13449_consen   86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLF  162 (326)
T ss_pred             ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEE
Confidence            345677744 67777776666      788888876 5443333211            11456788999999 888666


Q ss_pred             EEec-----CC---------eEEEEEec--CCCCCceeeeee--------cCCceEEEEECCCC
Q 020107          213 TGSY-----DE---------YLRVWDVR--SISKPVNETSVC--------LGGGVWRIKHHPFI  252 (331)
Q Consensus       213 ~~~~-----d~---------~i~iwd~~--~~~~~~~~~~~~--------~~~~v~~~~~~~~~  252 (331)
                      +..+     |+         .++++.+.  +...+..++...        ....|..+.+-+++
T Consensus       163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~  226 (326)
T PF13449_consen  163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG  226 (326)
T ss_pred             EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC
Confidence            6543     22         15555444  322233332222        34678889999986

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=84.30  E-value=6.3  Score=36.57  Aligned_cols=96  Identities=10%  Similarity=0.099  Sum_probs=56.8

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE-----EEecCCCccc---------CccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL-----LRDITGEKIS---------SSMCLCLEWNPSATSITVGLSDGSVSIV  132 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-----iw~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~i~  132 (331)
                      +.-..+.|-|.    |..+++-..||.-     ++--.++-.|         ...+..++|+.....++++. ...|++|
T Consensus       247 g~e~~LSWkpq----gS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lw  321 (1243)
T COG5290         247 GMEHQLSWKPQ----GSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLW  321 (1243)
T ss_pred             cchhccccccC----CceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEE
Confidence            33445899999    9999998877654     3222222222         23345667776655555543 4789999


Q ss_pred             EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc
Q 020107          133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS  169 (331)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  169 (331)
                      -...-.+-.....  .-..+.-+.|+|...+.++..+
T Consensus       322 ttkNyhWYLK~e~--~ip~~s~vkwhpe~~nTl~f~d  356 (1243)
T COG5290         322 TTKNYHWYLKVER--QIPGISYVKWHPEEKNTLLFRD  356 (1243)
T ss_pred             EccceEEEEEEee--cCCCcceeeeccccCcEEEEec
Confidence            8776544222222  2345677899986555554443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=83.92  E-value=26  Score=29.95  Aligned_cols=204  Identities=13%  Similarity=0.165  Sum_probs=105.1

Q ss_pred             EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc---CccEEEEEE----cCCCCe--EEEEec-C---CeEEEEEccc
Q 020107           71 DIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS---SSMCLCLEW----NPSATS--ITVGLS-D---GSVSIVSVVE  136 (331)
Q Consensus        71 ~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~---~~~v~~~~~----~~~~~~--l~~~~~-d---g~i~i~d~~~  136 (331)
                      +|=.+|.+|. ..+++....++-+ ++++......   .+.++.+..    .-.++.  |++++. +   .+|++|.+..
T Consensus        58 AIWvnp~dp~-kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~  136 (381)
T PF02333_consen   58 AIWVNPADPA-KSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDP  136 (381)
T ss_dssp             EEE--SS-GG-G-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEET
T ss_pred             cEecCCCCcc-cceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecC
Confidence            3444666554 5567666676666 8888876542   233333221    113433  455543 2   4799998763


Q ss_pred             --cceeeeee----eecccceeEEEee--CCCCC-cEEEEEcCCCeEEEEEccC---CC----ceeeeecccCCCcceEE
Q 020107          137 --SQLEVLQQ----WKAHEFELWATSF--DVHQP-HMVYTGSDDCKFSGWDIRE---SP----FKLAFQNSKIHKMGVCC  200 (331)
Q Consensus       137 --~~~~~~~~----~~~~~~~v~~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~---~~----~~~~~~~~~~~~~~v~~  200 (331)
                        +.+..+..    +......++.+|+  +|.++ -+++....+|.+..|-+..   +.    .++.|..    ...+-.
T Consensus       137 ~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EG  212 (381)
T PF02333_consen  137 DTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEG  212 (381)
T ss_dssp             TTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEE
T ss_pred             CCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceE
Confidence              32222111    1111234566665  34333 3666777889988887752   22    2444444    457888


Q ss_pred             EEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee-----ecCCceEEEEEC--CCCCCeEEEEEe-cCcEEEEEEcC
Q 020107          201 IASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV-----CLGGGVWRIKHH--PFIPGLVLAACM-HNGFAVVKVGG  272 (331)
Q Consensus       201 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~  272 (331)
                      +.... ....|+.+-++.-|.-|+.+...........     .....|-.|+.-  +++.++|++++. ++...+|+...
T Consensus       213 CVVDD-e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  213 CVVDD-ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEET-TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EEEec-ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            88887 6678899989888888887643222112111     123456666664  455577777774 45566676654


Q ss_pred             cccceeEEe
Q 020107          273 EKAEVLETY  281 (331)
Q Consensus       273 ~~~~~~~~~  281 (331)
                      . ...+..|
T Consensus       292 ~-~~~~g~f  299 (381)
T PF02333_consen  292 P-NAYVGSF  299 (381)
T ss_dssp             T---EEEEE
T ss_pred             C-CcccceE
Confidence            3 3334444

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=83.33  E-value=22  Score=28.61  Aligned_cols=162  Identities=10%  Similarity=-0.066  Sum_probs=81.2

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEcCC
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPS  116 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~  116 (331)
                      ...|+.+|+.+++ ......-...---..++...+     ++..-.-.++.. ++|..+.+..     ...-..++  .+
T Consensus        67 ~S~l~~~d~~tg~-~~~~~~l~~~~FgEGit~~~d-----~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~d  138 (264)
T PF05096_consen   67 QSSLRKVDLETGK-VLQSVPLPPRYFGEGITILGD-----KLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SD  138 (264)
T ss_dssp             EEEEEEEETTTSS-EEEEEE-TTT--EEEEEEETT-----EEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE--EC
T ss_pred             cEEEEEEECCCCc-EEEEEECCccccceeEEEECC-----EEEEEEecCCeEEEEccccceEEEEEecCCcceEEE--cC
Confidence            5578899988875 222211111111122222222     233333444444 7777665431     23334555  46


Q ss_pred             CCeEEEEecCCeEEEEEccccceeeeeeeecccc---eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc--
Q 020107          117 ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF---ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS--  191 (331)
Q Consensus       117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--  191 (331)
                      ++.|+.+.....|+++|..+-+............   .++.+.|.  ++...+=.=....|...|..+++....+...  
T Consensus       139 g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L  216 (264)
T PF05096_consen  139 GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGL  216 (264)
T ss_dssp             SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHH
T ss_pred             CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHh
Confidence            7788888888899999987643311111122222   34445554  4555555556666777777777655443220  


Q ss_pred             -------c---CCCcceEEEEEecCCCCEEEEE
Q 020107          192 -------K---IHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       192 -------~---~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                             .   +...-.+.|++.|..+.+++||
T Consensus       217 ~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  217 RPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             HHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             hhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence                   0   0145689999999556666666

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=82.88  E-value=5.3  Score=21.16  Aligned_cols=29  Identities=14%  Similarity=0.028  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCeEEEEEccCCCceeeeec
Q 020107          162 PHMVYTGSDDCKFSGWDIRESPFKLAFQN  190 (331)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  190 (331)
                      ..++++...++.|.++|..+++....+..
T Consensus         4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         4 TKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            34555555788999999987765555554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.53  E-value=56  Score=32.67  Aligned_cols=34  Identities=18%  Similarity=0.067  Sum_probs=30.7

Q ss_pred             CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          193 IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       193 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      .+..+|..+.+.. ...++.+-++.++|.+||+..
T Consensus       240 ~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  240 SSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence            4678999999998 788999999999999999987

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=81.48  E-value=4.1  Score=21.57  Aligned_cols=21  Identities=19%  Similarity=0.387  Sum_probs=15.9

Q ss_pred             CCCeEEEEecCCeEEEEEccc
Q 020107          116 SATSITVGLSDGSVSIVSVVE  136 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~  136 (331)
                      .+..+++++.||.+..+|.++
T Consensus        20 ~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   20 AGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             CTSEEEEE-TTSEEEEEETT-
T ss_pred             ECCEEEEEcCCCEEEEEeCCC
Confidence            456899999999999998753

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=81.23  E-value=31  Score=28.84  Aligned_cols=55  Identities=7%  Similarity=-0.014  Sum_probs=29.7

Q ss_pred             CCCCeEEEEecCC----eEEEEEccccceeeeeeeec-c-cc---eeEEEeeCCCCCcEEEEEcCC
Q 020107          115 PSATSITVGLSDG----SVSIVSVVESQLEVLQQWKA-H-EF---ELWATSFDVHQPHMVYTGSDD  171 (331)
Q Consensus       115 ~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~-~-~~---~v~~~~~~~~~~~~l~~~~~d  171 (331)
                      .+++..+.|+.++    .+..||+++.++..+..+.. . ..   ....+..  .++.+++.|+.+
T Consensus       170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~--~~~~iyv~GG~~  233 (323)
T TIGR03548       170 LQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKI--NESLLLCIGGFN  233 (323)
T ss_pred             ECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEE--CCCEEEEECCcC
Confidence            3566677776653    35688998877754433211 0 10   1112222  255778888765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=81.16  E-value=37  Score=29.66  Aligned_cols=151  Identities=14%  Similarity=0.085  Sum_probs=89.1

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcccCc------------cEE-EEEEcCCCCeEEEEecCCeEEEE-
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSS------------MCL-CLEWNPSATSITVGLSDGSVSIV-  132 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~~~~------------~v~-~~~~~~~~~~l~~~~~dg~i~i~-  132 (331)
                      ..|..+-..|+    ++.|..-+.+...++++.+......            .|. .+..-..+..++++..||.|..| 
T Consensus       221 ~~v~qllL~Pd----g~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         221 SDVSQLLLTPD----GKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             cchHhhEECCC----CCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            34666777888    7887776664333666554433211            111 11112245568889999998877 


Q ss_pred             Eccccc---eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107          133 SVVESQ---LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN  209 (331)
Q Consensus       133 d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  209 (331)
                      |.+.+.   ...++.++-...++..+.-. ++.+-+++-+..|++.++.....+....-.    --..+.-++++| .+.
T Consensus       297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~----~~~~~~~~~~Sp-~~~  370 (733)
T COG4590         297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFER----AYQAPQLVAMSP-NQA  370 (733)
T ss_pred             eeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhh----hhcCcceeeeCc-ccc
Confidence            554422   22233333333344444332 255678888899999888766544322212    233667789999 888


Q ss_pred             EEEEEecCCeEEEEEecCC
Q 020107          210 TLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       210 ~l~~~~~d~~i~iwd~~~~  228 (331)
                      ++++-. .|.|+++.+++.
T Consensus       371 ~Ll~e~-~gki~~~~l~Nr  388 (733)
T COG4590         371 YLLSED-QGKIRLAQLENR  388 (733)
T ss_pred             hheeec-CCceEEEEecCC
Confidence            888764 577999998874

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=80.54  E-value=33  Score=28.69  Aligned_cols=66  Identities=8%  Similarity=0.051  Sum_probs=37.3

Q ss_pred             CCCeEEEEec-----CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC----eEEEEEccCCC
Q 020107          116 SATSITVGLS-----DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC----KFSGWDIRESP  183 (331)
Q Consensus       116 ~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~  183 (331)
                      +++..+.|+.     ...+..||+.+.++..+..+.... .....+.. .++++.+.|+.++    .+..||+.+.+
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~-~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVK-LQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEE-ECCEEEEEcCCCCccccceEEEecCCCe
Confidence            4555566653     246888999888775554332211 11111112 2557778887654    35688888754

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.45  E-value=63  Score=31.96  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=20.8

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL   94 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i   94 (331)
                      .....++|.|.    ..++|.+...|.+
T Consensus        36 ~~~~~~afD~~----q~llai~t~tg~i   59 (993)
T KOG1983|consen   36 STPSALAFDPT----QGLLAIGTRTGAI   59 (993)
T ss_pred             CCCcceeeccc----cceEEEEEecccE
Confidence            34667889999    8899999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.65
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.64
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.54
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.53
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.53
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.53
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.48
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.48
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.47
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.47
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.45
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.45
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.44
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.41
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.38
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.3
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.28
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.27
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.26
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.21
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.18
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.12
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.11
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.09
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.05
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.05
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.02
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.01
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.01
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.98
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.96
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.96
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.94
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.94
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.92
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.92
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.91
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.9
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.85
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.79
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.76
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.75
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.71
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.7
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.67
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.66
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.65
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.64
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.62
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.61
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.6
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.59
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.59
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.58
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.58
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.57
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.56
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.53
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.5
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.47
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.47
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.45
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.42
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.41
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.4
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.39
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.38
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.38
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.37
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.37
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.37
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.34
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.34
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.33
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.26
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.26
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.25
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.24
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.23
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.21
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.2
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.05
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.02
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.99
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.97
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.97
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.94
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.92
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.92
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.9
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.89
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.84
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.83
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.8
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.79
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.6
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.47
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.44
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.4
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.4
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.36
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.32
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.26
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.21
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.2
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.19
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.08
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.98
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.95
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.94
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.87
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.84
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.82
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	96.77
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.75
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.75
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.74
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.74
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.73
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.61
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.61
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.49
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.36
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.84
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.68
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.57
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.41
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.4
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.38
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.16
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.03
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.42
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.39
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	92.71
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.44
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.3
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	90.79
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	88.45
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	87.72
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.62
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.48
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.6
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.4
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.68
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	83.09

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.9e-48  Score=320.60  Aligned_cols=286  Identities=15%  Similarity=0.181  Sum_probs=232.1

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccC-------c--ccceEEeEeeecCcEeEEEEcCCC
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNA-------E--EKNLELLYRMDTAGIFDIKWSPVG   78 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~-------~--~~~~~~~~~~~~~~v~~~~~~~~~   78 (331)
                      ++.++.+++|+|++   .+|++++           ++++++||...       .  ..........+...|.+++|+|+ 
T Consensus        29 ~~~~v~~~~fs~dG---~~l~~~s-----------d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-   93 (344)
T 4gqb_B           29 MERQLEAARYRSDG---ALLLGAS-----------SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-   93 (344)
T ss_dssp             CCSEEEEEEECTTS---CEEEEEE-----------CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-
T ss_pred             ccCCEEEEEECCCC---CEEEEEe-----------CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-
Confidence            45678888888877   8999887           77777776321       1  00122223456788999999998 


Q ss_pred             CCCCCeEEEEcCCccE-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec
Q 020107           79 GNAGPFLAQADADGGL-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA  147 (331)
Q Consensus        79 ~~~~~~l~~~~~dg~i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  147 (331)
                         + .|++|+.||.+ +|++.+++.          |...|.+++|+|++++|++|+.|++|++||+++++.  +..+.+
T Consensus        94 ---~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~--~~~~~~  167 (344)
T 4gqb_B           94 ---R-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV--LSSYRA  167 (344)
T ss_dssp             ---T-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECC
T ss_pred             ---C-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcC
Confidence               3 68899999999 999987643          678999999999999999999999999999998754  788999


Q ss_pred             ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      |...|++++|+|++..+|++++.|+.|++||+++++....+.. ..|...+.+++|+|.++.+|++|+.|+.|++||+++
T Consensus       168 h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~  246 (344)
T 4gqb_B          168 HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS  246 (344)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred             cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence            9999999999996667899999999999999999987776654 336678999999996778999999999999999998


Q ss_pred             CCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCc
Q 020107          228 ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNS  307 (331)
Q Consensus       228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  307 (331)
                      . +++.. +..|...|++++|+|++..++++++.|+.+++|++..  + .+..+.+|.+.|++++|+|++.        .
T Consensus       247 ~-~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~--~-~~~~~~~H~~~V~~v~~sp~~~--------~  313 (344)
T 4gqb_B          247 T-SCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL--S-ELFRSQAHRDFVRDATWSPLNH--------S  313 (344)
T ss_dssp             ---CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--C-EEEEECCCSSCEEEEEECSSST--------T
T ss_pred             C-cEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--C-cEEEEcCCCCCEEEEEEeCCCC--------e
Confidence            6 44544 5789999999999999756677777888889988765  3 3456789999999999999985        6


Q ss_pred             EEEEeecCCCeEEEEcCCCccc
Q 020107          308 LVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       308 ~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +|+|+| .|++|++|++.+..+
T Consensus       314 llas~s-~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          314 LLTTVG-WDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEEEE-TTSCEEEEECCC---
T ss_pred             EEEEEc-CCCeEEEEECCCCCC
Confidence            788999 999999999987643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-47  Score=316.70  Aligned_cols=282  Identities=16%  Similarity=0.241  Sum_probs=244.2

Q ss_pred             ecCcceeEeeecCC-CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107            8 LDGNADAVEFCPQD-SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         8 ~~~~~~~v~~~~~~-~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      +++.+.+|+|+|.. +++.+|++|+          .|+.|+||++..........+.+|...|.+++|+|+    +.+++
T Consensus        31 H~~~V~~v~~~~~~~~~~~~l~tgs----------~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~----~~~l~   96 (321)
T 3ow8_A           31 HDDAIWSVAWGTNKKENSETVVTGS----------LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT----LPIAA   96 (321)
T ss_dssp             SSSCEEEEEEC-------CEEEEEE----------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS----SSEEE
T ss_pred             CCCcEEEEEEecCCCCCCCEEEEEc----------CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC----CCEEE
Confidence            45678899998864 2457999999          899999999987653344456889999999999999    89999


Q ss_pred             EEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107           87 QADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (331)
                      +++.|+.+ +|++.+.+.      +...+.+++|+|++++|++|+.||.|++|++++++.  ...+..|...+.+++|+|
T Consensus        97 s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~--~~~~~~~~~~v~~~~~sp  174 (321)
T 3ow8_A           97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK--EYSLDTRGKFILSIAYSP  174 (321)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE--EEEEECSSSCEEEEEECT
T ss_pred             EEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce--eEEecCCCceEEEEEECC
Confidence            99999999 999987654      456788999999999999999999999999998754  566778888999999999


Q ss_pred             CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec
Q 020107          160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL  239 (331)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  239 (331)
                       ++++|++++.|+.|++||+++++....+..   |...|.+++|+| ++.+|++++.|+.|++||++.. ..... +..|
T Consensus       175 -dg~~lasg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~-~~~~~-~~~h  247 (321)
T 3ow8_A          175 -DGKYLASGAIDGIINIFDIATGKLLHTLEG---HAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHA-NLAGT-LSGH  247 (321)
T ss_dssp             -TSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTC-CEEEE-ECCC
T ss_pred             -CCCEEEEEcCCCeEEEEECCCCcEEEEEcc---cCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCc-ceeEE-EcCC
Confidence             889999999999999999999887766665   999999999999 9999999999999999999975 33333 5789


Q ss_pred             CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107          240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL  319 (331)
Q Consensus       240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i  319 (331)
                      ...|.+++|+|++ ..+++++.++.+++|++..  ++.+.++.+|...|++++|+|++         ++|++++ .|+.|
T Consensus       248 ~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~--~~~~~~~~~h~~~v~~v~~s~~g---------~~l~s~~-~d~~i  314 (321)
T 3ow8_A          248 ASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGT--RTCVHTFFDHQDQVWGVKYNGNG---------SKIVSVG-DDQEI  314 (321)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTS---------SEEEEEE-TTCCE
T ss_pred             CCceEEEEECCCC-CEEEEEeCCCcEEEEeCCC--CEEEEEEcCCCCcEEEEEECCCC---------CEEEEEe-CCCeE
Confidence            9999999999997 6788888889999999876  58888999999999999999998         6999999 99999


Q ss_pred             EEEcCC
Q 020107          320 RIWMPE  325 (331)
Q Consensus       320 ~iW~~~  325 (331)
                      ++||..
T Consensus       315 ~vwd~p  320 (321)
T 3ow8_A          315 HIYDCP  320 (321)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.9e-47  Score=324.16  Aligned_cols=275  Identities=19%  Similarity=0.286  Sum_probs=242.8

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+++.+++|+|.+   .+|++|+          .||.|++||+.+++  ....+.+|...|.+++|+|+    +++|++|
T Consensus       108 ~~~V~~~~~~p~~---~~l~s~s----------~Dg~i~vwd~~~~~--~~~~l~~h~~~V~~v~~~~~----~~~l~sg  168 (410)
T 1vyh_C          108 RSPVTRVIFHPVF---SVMVSAS----------EDATIKVWDYETGD--FERTLKGHTDSVQDISFDHS----GKLLASC  168 (410)
T ss_dssp             SSCEEEEEECSSS---SEEEEEE----------SSSCEEEEETTTCC--CCEEECCCSSCEEEEEECTT----SSEEEEE
T ss_pred             CCcEEEEEEcCCC---CEEEEEe----------CCCeEEEEECCCCc--EEEEEeccCCcEEEEEEcCC----CCEEEEE
Confidence            3456777777765   8999998          79999999999875  44556889999999999999    8999999


Q ss_pred             cCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107           89 DADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (331)
                      +.|+.+ +|++.+.+.      |...|.+++|+|++++|++|+.|++|++||++++..  +..+.+|...|.+++|+| +
T Consensus       169 s~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~-~  245 (410)
T 1vyh_C          169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRMVRPNQ-D  245 (410)
T ss_dssp             ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECT-T
T ss_pred             eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EEEEeCCCccEEEEEECC-C
Confidence            999999 999987543      678999999999999999999999999999998754  778899999999999998 8


Q ss_pred             CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC--------------------CCEEEEEecCCeEE
Q 020107          162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD--------------------SNTLLTGSYDEYLR  221 (331)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~~l~~~~~d~~i~  221 (331)
                      +.++++++.|+.|++||++++++...+..   |...|.+++|+| +                    +.+|++|+.|+.|+
T Consensus       246 g~~l~s~s~D~~v~vwd~~~~~~~~~~~~---h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~  321 (410)
T 1vyh_C          246 GTLIASCSNDQTVRVWVVATKECKAELRE---HRHVVECISWAP-ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  321 (410)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECC-SCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeeEecC---CCceEEEEEEcC-cccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence            89999999999999999999887777766   999999999998 4                    56899999999999


Q ss_pred             EEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCccc
Q 020107          222 VWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLE  301 (331)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  301 (331)
                      +||++++ .++.. +.+|...|.+++|+|++ ..+++++.++.+++|++..  ++.+.++.+|...|++++|+|++    
T Consensus       322 iwd~~~~-~~~~~-~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~----  392 (410)
T 1vyh_C          322 MWDVSTG-MCLMT-LVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKN--KRCMKTLNAHEHFVTSLDFHKTA----  392 (410)
T ss_dssp             EEETTTT-EEEEE-EECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTT--SCCCEEEECCSSCEEEEEECSSS----
T ss_pred             EEECCCC-ceEEE-EECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC--CceEEEEcCCCCcEEEEEEcCCC----
Confidence            9999985 44444 57899999999999997 6777888888899999865  57888999999999999999998    


Q ss_pred             ccccCcEEEEeecCCCeEEEEcC
Q 020107          302 GKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       302 ~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                           .+|++++ .|++|++|++
T Consensus       393 -----~~l~sgs-~D~~i~vW~~  409 (410)
T 1vyh_C          393 -----PYVVTGS-VDQTVKVWEC  409 (410)
T ss_dssp             -----SCEEEEE-TTSEEEEEC-
T ss_pred             -----CEEEEEe-CCCcEEEEeC
Confidence                 6999999 9999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=8.6e-46  Score=309.40  Aligned_cols=273  Identities=18%  Similarity=0.263  Sum_probs=234.0

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      +.+.+++|+|.+   ++|++|+          .||.|++||+.+..  .......|...|.+++|+|+    +++|++++
T Consensus        56 ~~v~~~~~s~d~---~~l~s~s----------~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~~~~s~~----~~~l~s~~  116 (340)
T 1got_B           56 AKIYAMHWGTDS---RLLLSAS----------QDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAPS----GNYVACGG  116 (340)
T ss_dssp             SCEEEEEECTTS---SEEEEEE----------TTTEEEEEETTTCC--EEEEEECSSSCEEEEEECTT----SSEEEEEE
T ss_pred             CceEEEEECCCC---CEEEEEe----------CCCcEEEEECCCCC--cceEeecCCccEEEEEECCC----CCEEEEEe
Confidence            355666676655   8999999          89999999998875  33444778999999999999    99999999


Q ss_pred             CCccE-EEecCCCc----------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107           90 ADGGL-LRDITGEK----------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus        90 ~dg~i-iw~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  158 (331)
                      .|+.+ +|++.+..          .|...|.++.|++++. +++++.|+.|++||+++++.  +..+.+|...|.+++|+
T Consensus       117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~  193 (340)
T 1got_B          117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEC
T ss_pred             CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE--EEEEcCCCCceEEEEEC
Confidence            99999 99987643          2678899999998765 89999999999999998754  77888999999999999


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee-e
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS-V  237 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~  237 (331)
                      | ++.++++|+.|+.|++||++++.....+..   |...|.+++|+| ++++|++++.|++|++||++.. +++.... .
T Consensus       194 ~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~---h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~  267 (340)
T 1got_B          194 P-DTRLFVSGACDASAKLWDVREGMCRQTFTG---HESDINAICFFP-NGNAFATGSDDATCRLFDLRAD-QELMTYSHD  267 (340)
T ss_dssp             T-TSSEEEEEETTSCEEEEETTTCSEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCT
T ss_pred             C-CCCEEEEEeCCCcEEEEECCCCeeEEEEcC---CcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCC-cEEEEEccC
Confidence            9 789999999999999999999887777766   999999999999 9999999999999999999985 3333311 1


Q ss_pred             ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107          238 CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR  317 (331)
Q Consensus       238 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~  317 (331)
                      .+...|.+++|+|++ .++++++.++.+++|++..  .+.+..+.+|...|++++|+|++         .+|+|++ .|+
T Consensus       268 ~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~s~dg---------~~l~s~s-~D~  334 (340)
T 1got_B          268 NIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALK--ADRAGVLAGHDNRVSCLGVTDDG---------MAVATGS-WDS  334 (340)
T ss_dssp             TCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTS---------SCEEEEE-TTS
T ss_pred             CcccceEEEEECCCC-CEEEEECCCCeEEEEEccc--CcEeeEeecCCCcEEEEEEcCCC---------CEEEEEc-CCc
Confidence            233479999999997 6777777888899999876  57788899999999999999998         6999999 999


Q ss_pred             eEEEEc
Q 020107          318 LLRIWM  323 (331)
Q Consensus       318 ~i~iW~  323 (331)
                      .|++||
T Consensus       335 ~i~iWd  340 (340)
T 1got_B          335 FLKIWN  340 (340)
T ss_dssp             CEEEEC
T ss_pred             cEEecC
Confidence            999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3e-46  Score=313.91  Aligned_cols=291  Identities=16%  Similarity=0.181  Sum_probs=229.3

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      ++.++.+|+|+|++   .+||+|+.+..    ..-|+.|++|+......  .+......|...|++++|+|+    +. +
T Consensus        41 H~~~V~~v~fSpDG---~~las~s~d~~----~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d----~~-~  108 (357)
T 4g56_B           41 MEVQIGAVRYRRDG---ALLLAASSLSS----RTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE----KG-I  108 (357)
T ss_dssp             CCSEEEEEEECSSS---CEEEEEECSSS----SSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT----TE-E
T ss_pred             ccCCEEEEEECCCC---CEEEEEcCCCC----ccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC----CC-E
Confidence            45678889998877   89999982100    00178899999876532  123334578889999999998    54 5


Q ss_pred             EEEcCCccE-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE
Q 020107           86 AQADADGGL-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA  154 (331)
Q Consensus        86 ~~~~~dg~i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~  154 (331)
                      ++++.||.+ +|++.+.+.          |...|.+++|+|++++|++|+.||.|++||+++++.  +..+.+|...|++
T Consensus       109 l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~--~~~~~~h~~~v~~  186 (357)
T 4g56_B          109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV--LKSYNAHSSEVNC  186 (357)
T ss_dssp             EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEE
T ss_pred             EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEEE
Confidence            567789999 999877542          578899999999999999999999999999998754  7788899999999


Q ss_pred             EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107          155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      ++|+|.+..++++++.|+.|++||+++++....+.. ..|...+.+++|+|..+.+|++|+.|+.|++||++++ +++..
T Consensus       187 v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~  264 (357)
T 4g56_B          187 VAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQT  264 (357)
T ss_dssp             EEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEE
T ss_pred             EEEccCCCceeeeeccCCceEEEECCCCceeeeeee-ccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEE
Confidence            999996567899999999999999999887665554 3477889999999955789999999999999999985 44443


Q ss_pred             eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107          235 TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       235 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  314 (331)
                       +..|...|++++|+|++..++++++.|+.+++|++..  ++.+. ..+|.+.|++++|+|.+.        .+|+|+| 
T Consensus       265 -~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~--~~~~~-~~~H~~~V~~vafsP~d~--------~~l~s~s-  331 (357)
T 4g56_B          265 -SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF--SEVFR-DLSHRDFVTGVAWSPLDH--------SKFTTVG-  331 (357)
T ss_dssp             -ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS--CEEEE-ECCCSSCEEEEEECSSST--------TEEEEEE-
T ss_pred             -EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC--CcEeE-ECCCCCCEEEEEEeCCCC--------CEEEEEc-
Confidence             5789999999999999756677777788899998765  45544 458999999999999432        7999999 


Q ss_pred             CCCeEEEEcCCCc
Q 020107          315 YDRLLRIWMPESD  327 (331)
Q Consensus       315 ~d~~i~iW~~~~~  327 (331)
                      .||+|++|++.+.
T Consensus       332 ~Dg~v~iW~~~~~  344 (357)
T 4g56_B          332 WDHKVLHHHLPSE  344 (357)
T ss_dssp             TTSCEEEEECC--
T ss_pred             CCCeEEEEECCCC
Confidence            9999999998654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-45  Score=307.06  Aligned_cols=289  Identities=17%  Similarity=0.238  Sum_probs=233.5

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      .+.+++|+|.+   ++||+|+          .|+.|+||++...... ......+|...|.+++|+|+    +++|++|+
T Consensus        18 ~v~~l~~sp~g---~~las~~----------~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~----g~~l~s~s   80 (345)
T 3fm0_A           18 RCWFLAWNPAG---TLLASCG----------GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC----GNYLASAS   80 (345)
T ss_dssp             CEEEEEECTTS---SCEEEEE----------TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT----SSEEEEEE
T ss_pred             cEEEEEECCCC---CEEEEEc----------CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC----CCEEEEEE
Confidence            45677887766   8999998          7999999999876422 22234679999999999999    99999999


Q ss_pred             CCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc-eeeeeeeecccceeEEEeeCC
Q 020107           90 ADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ-LEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        90 ~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~  159 (331)
                      .|+.+ +|++....        .|...|.+++|+|++++|++|+.|+.|++||++++. ...+..+.+|...|.+++|+|
T Consensus        81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred             CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence            99999 99987643        267899999999999999999999999999998753 344667788999999999999


Q ss_pred             CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC--------
Q 020107          160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP--------  231 (331)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--------  231 (331)
                       ++.+|++++.|+.|++||.++++....... .+|...|.+++|+| ++++|++++.|++|++||.......        
T Consensus       161 -~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~-~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~  237 (345)
T 3fm0_A          161 -SQELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS  237 (345)
T ss_dssp             -SSSCEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred             -CCCEEEEEeCCCcEEEEEecCCCEEEEEEe-cCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence             788999999999999999987753322222 44999999999999 9999999999999999998543221        


Q ss_pred             ------ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--cc-----eeEEeecCCcceeeeeecCCCC
Q 020107          232 ------VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK--AE-----VLETYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       232 ------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~h~~~v~~~~~~~~~~  298 (331)
                            +......|...|++++|+|++ ..+++++.++.+++|+.....  ..     ......+|...|++++|+|+++
T Consensus       238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~  316 (345)
T 3fm0_A          238 DPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP  316 (345)
T ss_dssp             -CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred             CCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence                  111112378899999999997 778888899999999986532  11     1122358999999999999975


Q ss_pred             cccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          299 SLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       299 ~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                              .+|||++ .||+|++|++.++..
T Consensus       317 --------~~laS~s-~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          317 --------GLLASCS-DDGEVAFWKYQRPEG  338 (345)
T ss_dssp             --------TEEEEEE-TTSCEEEEEECC---
T ss_pred             --------eEEEEcC-CCCcEEEEEecCCCC
Confidence                    6999999 999999999987654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.8e-45  Score=305.39  Aligned_cols=275  Identities=19%  Similarity=0.266  Sum_probs=234.8

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      +.+.+++|+|.+   .+||+|+          .||.|++||..+..  .......|...|.+++|+|+    +..|++++
T Consensus        65 ~~V~~~~~s~d~---~~l~s~s----------~Dg~v~vWd~~~~~--~~~~~~~~~~~v~~~~~sp~----g~~lasg~  125 (354)
T 2pbi_B           65 NKVLCMDWCKDK---RRIVSSS----------QDGKVIVWDSFTTN--KEHAVTMPCTWVMACAYAPS----GCAIACGG  125 (354)
T ss_dssp             SCEEEEEECTTS---SEEEEEE----------TTSEEEEEETTTCC--EEEEEECSSSCCCEEEECTT----SSEEEEES
T ss_pred             CeEEEEEECCCC---CEEEEEe----------CCCeEEEEECCCCC--cceEEecCCCCEEEEEECCC----CCEEEEee
Confidence            346677777655   8999999          89999999988765  33444678889999999999    99999999


Q ss_pred             CCccE-EEecCCCc------------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107           90 ADGGL-LRDITGEK------------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        90 ~dg~i-iw~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  156 (331)
                      .|+.+ +|++....            .|...|.+++|+|+++.|++++.|++|++||+++++.  +..+.+|...|.+++
T Consensus       126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~--~~~~~~h~~~v~~~~  203 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL--LQSFHGHGADVLCLD  203 (354)
T ss_dssp             TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEE
T ss_pred             CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEcCCCCCeEEEE
Confidence            99999 99876431            2678899999999999999999999999999998754  788899999999999


Q ss_pred             eCCC-CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107          157 FDVH-QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       157 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  235 (331)
                      |+|. ++++|++|+.||.|++||++++++...+..   |...|++++|+| ++.+|++++.|++|++||++.. ..+...
T Consensus       204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~---h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~-~~~~~~  278 (354)
T 2pbi_B          204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET---HESDVNSVRYYP-SGDAFASGSDDATCRLYDLRAD-REVAIY  278 (354)
T ss_dssp             ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEE
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-cEEEEE
Confidence            9874 357999999999999999999987777766   999999999999 9999999999999999999975 333321


Q ss_pred             e-eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107          236 S-VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       236 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  314 (331)
                      . ..+...+.+++|+|++ ..+++++.++.+++|++..  ++.+..+.+|...|++++|+|++         ++|++++ 
T Consensus       279 ~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~--~~~~~~l~~h~~~v~~l~~spdg---------~~l~sgs-  345 (354)
T 2pbi_B          279 SKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLK--GSRVSILFGHENRVSTLRVSPDG---------TAFCSGS-  345 (354)
T ss_dssp             CCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTT--CSEEEEECCCSSCEEEEEECTTS---------SCEEEEE-
T ss_pred             cCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCC--CceEEEEECCCCcEEEEEECCCC---------CEEEEEc-
Confidence            1 1233478999999997 6777777888999999876  57788899999999999999999         6999999 


Q ss_pred             CCCeEEEEc
Q 020107          315 YDRLLRIWM  323 (331)
Q Consensus       315 ~d~~i~iW~  323 (331)
                      .|++|++|+
T Consensus       346 ~D~~v~vW~  354 (354)
T 2pbi_B          346 WDHTLRVWA  354 (354)
T ss_dssp             TTSEEEEEC
T ss_pred             CCCCEEecC
Confidence            999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-44  Score=301.89  Aligned_cols=286  Identities=14%  Similarity=0.180  Sum_probs=229.2

Q ss_pred             CcceeEeeec--CCC-CCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-----ceEEeEeeecCcEeEEEEcCCCCCC
Q 020107           10 GNADAVEFCP--QDS-YHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-----NLELLYRMDTAGIFDIKWSPVGGNA   81 (331)
Q Consensus        10 ~~~~~v~~~~--~~~-~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~   81 (331)
                      ..+.+|+|.+  ..+ ++++||+|+          .|+.|++|++...+.     .....+.+|...|.+++|+|+    
T Consensus        22 ~~V~~~~~~~s~~~~~d~~~l~sgs----------~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~----   87 (343)
T 2xzm_R           22 DWVTSIVAGFSQKENEDSPVLISGS----------RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE----   87 (343)
T ss_dssp             SCEEEEEECCCSSTTCCCCEEEEEE----------TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS----
T ss_pred             hhhhheeeEEEeecCCCCCEEEEEc----------CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC----
Confidence            3456676622  122 558999999          799999999975431     233445789999999999999    


Q ss_pred             CCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE
Q 020107           82 GPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA  154 (331)
Q Consensus        82 ~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~  154 (331)
                      +.+|++++.|+.+ +|++.+.+.      |...|.+++|+|++++|++++.|+.|++||+.............|...|.+
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC  167 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence            8999999999999 999987653      788999999999999999999999999999975332222222368889999


Q ss_pred             EeeCCCC---------CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEe
Q 020107          155 TSFDVHQ---------PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDV  225 (331)
Q Consensus       155 ~~~~~~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~  225 (331)
                      ++|+|..         ..++++++.|+.|++||.+ .+....+..   |...|.+++|+| ++++|++|+.|+.|++||+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~---h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKA---HESNVNHLSISP-NGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTCEEEEEES
T ss_pred             eeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcC---ccccceEEEECC-CCCEEEEEcCCCeEEEEEC
Confidence            9999843         2689999999999999943 333444544   999999999999 9999999999999999999


Q ss_pred             cCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-----------cCCcceeeeeec
Q 020107          226 RSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-----------KHGSLAYGADWQ  294 (331)
Q Consensus       226 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~h~~~v~~~~~~  294 (331)
                      +....+...  ..+...|.+++|+|+  +.+++++.++++++|++.......+..+.           +|...|++++|+
T Consensus       243 ~~~~~~~~~--~~~~~~v~~v~~sp~--~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  318 (343)
T 2xzm_R          243 LNLTYPQRE--FDAGSTINQIAFNPK--LQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN  318 (343)
T ss_dssp             SCCSSCSEE--EECSSCEEEEEECSS--SCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred             CCCccccee--ecCCCcEEEEEECCC--CCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence            665455554  456778999999999  55677888999999998764333333443           688899999999


Q ss_pred             CCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          295 RGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       295 ~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      |++         ++|++|+ .||.|++|+++++.
T Consensus       319 p~g---------~~l~sg~-~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          319 ALG---------KKLFAGF-TDGVIRTFSFETSA  342 (343)
T ss_dssp             SSS---------CCEEEEE-TTSEEEEEEEEEEE
T ss_pred             CCC---------CeEEEec-CCceEEEEEEEccC
Confidence            999         6999999 99999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.4e-44  Score=297.89  Aligned_cols=279  Identities=14%  Similarity=0.265  Sum_probs=233.1

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      .+.+.+++|+|..+  ++|++|+          .|+.|++|++......   ....+.+|...|.+++|+|+    +++|
T Consensus        17 ~~~V~~l~~~~~~~--~~l~s~s----------~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d----g~~l   80 (319)
T 3frx_A           17 NGWVTSLATSAGQP--NLLLSAS----------RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD----GAYA   80 (319)
T ss_dssp             SSCEEEEEECSSCT--TEEEEEE----------TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT----SSEE
T ss_pred             cceEEEEEccCCCc--cEEEEec----------CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC----CCEE
Confidence            34566777777554  7999999          8999999999754321   23345789999999999999    9999


Q ss_pred             EEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107           86 AQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus        86 ~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  158 (331)
                      ++++.|+.+ +|++.+++.      |...|.+++|+|++++|++|+.|+.|++||++..   .+..+.+|...|.+++|.
T Consensus        81 ~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~---~~~~~~~h~~~v~~~~~~  157 (319)
T 3frx_A           81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ---CLATLLGHNDWVSQVRVV  157 (319)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEEC
T ss_pred             EEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEeccCCcEEEEEEc
Confidence            999999999 999988654      7889999999999999999999999999999753   366778899999999999


Q ss_pred             CC-----CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCce
Q 020107          159 VH-----QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVN  233 (331)
Q Consensus       159 ~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  233 (331)
                      |.     ++..+++++.|+.|++||+++.+....+..   |...|.+++|+| ++.+|++++.|+.|++||+++. +++.
T Consensus       158 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~-~~~~  232 (319)
T 3frx_A          158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG---HNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAK-KAMY  232 (319)
T ss_dssp             CC------CCEEEEEETTSCEEEEETTTTEEEEEECC---CCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-EEEE
T ss_pred             cCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC---CCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-cEEE
Confidence            84     234899999999999999998876666655   999999999999 9999999999999999999985 4455


Q ss_pred             eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee--------cCCcceeeeeecCCCCccccccc
Q 020107          234 ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA--------KHGSLAYGADWQRGRSSLEGKRK  305 (331)
Q Consensus       234 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~~~~  305 (331)
                      .  ..+...|.+++|+|+  +.+++++.++++++|++...  ..+..+.        .|...+.+++|+|++        
T Consensus       233 ~--~~~~~~v~~~~~sp~--~~~la~~~~~~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--------  298 (319)
T 3frx_A          233 T--LSAQDEVFSLAFSPN--RYWLAAATATGIKVFSLDPQ--YLVDDLRPEFAGYSKAAEPHAVSLAWSADG--------  298 (319)
T ss_dssp             E--EECCSCEEEEEECSS--SSEEEEEETTEEEEEEETTE--EEEEEECCCCTTCCGGGCCCEEEEEECTTS--------
T ss_pred             E--ecCCCcEEEEEEcCC--CCEEEEEcCCCcEEEEeCcC--eeeeccCccccccccCcCcceeEEEECCCC--------
Confidence            4  455678999999999  55667777888999998763  4444443        346679999999999        


Q ss_pred             CcEEEEeecCCCeEEEEcCCCc
Q 020107          306 NSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       306 ~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                       ++|++++ .|+.|++||+.++
T Consensus       299 -~~l~sg~-~Dg~i~vWd~~t~  318 (319)
T 3frx_A          299 -QTLFAGY-TDNVIRVWQVMTA  318 (319)
T ss_dssp             -SEEEEEE-TTSCEEEEEEEEC
T ss_pred             -CEEEEee-cCceEEEEEEeec
Confidence             7999999 9999999998764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.3e-43  Score=291.59  Aligned_cols=282  Identities=13%  Similarity=0.182  Sum_probs=237.5

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+.+.+|+|+|.+   ++|++|+          .||.|++||+.+..  .......|..+|.+++|+|+    +++|++|
T Consensus        13 ~~~V~~~~fsp~~---~~l~s~~----------~dg~v~lWd~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~l~s~   73 (304)
T 2ynn_A           13 SDRVKGIDFHPTE---PWVLTTL----------YSGRVELWNYETQV--EVRSIQVTETPVRAGKFIAR----KNWIIVG   73 (304)
T ss_dssp             CSCEEEEEECSSS---SEEEEEE----------TTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGG----GTEEEEE
T ss_pred             CCceEEEEECCCC---CEEEEEc----------CCCcEEEEECCCCc--eeEEeeccCCcEEEEEEeCC----CCEEEEE
Confidence            4567778887776   8999998          79999999998875  33444778999999999999    8999999


Q ss_pred             cCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107           89 DADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (331)
                      +.|+.+ +|++.+++.      |...|.+++|+|++++|++|+.|++|++||++++. .....+.+|...|.+++|+|.+
T Consensus        74 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~  152 (304)
T 2ynn_A           74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKD  152 (304)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTC
T ss_pred             CCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-chhhhhcccCCcEEEEEECCCC
Confidence            999999 999987654      78899999999999999999999999999998764 3456788999999999999977


Q ss_pred             CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC-CCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107          162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS-DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      +..|++|+.|+.|++||+++......+..  .|...+..+.|+|. ++.+|++++.|++|++||+++. +++.. +..|.
T Consensus       153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~-~~~h~  228 (304)
T 2ynn_A          153 PSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVAT-LEGHM  228 (304)
T ss_dssp             TTEEEEEETTSEEEEEETTCSSCSEEEEC--CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEE-EECCS
T ss_pred             CCEEEEEeCCCeEEEEECCCCCccceecc--CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-cccee-eCCCC
Confidence            88999999999999999988765544442  36788999999873 5679999999999999999985 44444 57899


Q ss_pred             CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCc-EEEEeecCCCeE
Q 020107          241 GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNS-LVATCSFYDRLL  319 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~~~~d~~i  319 (331)
                      ..|.+++|+|++ ..+++++.|+.+++|++..  .+.+.++..|...+++++|+|++.        . ++++++  |..+
T Consensus       229 ~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~asg~--~~g~  295 (304)
T 2ynn_A          229 SNVSFAVFHPTL-PIIISGSEDGTLKIWNSST--YKVEKTLNVGLERSWCIATHPTGR--------KNYIASGF--DNGF  295 (304)
T ss_dssp             SCEEEEEECSSS-SEEEEEETTSCEEEEETTT--CCEEEEECCSSSSEEEEEECTTCG--------GGCEEEEE--TTEE
T ss_pred             CCEEEEEECCCC-CEEEEEcCCCeEEEEECCC--CceeeeccCCCccEEEEEECCCCC--------ceEEEEec--CCce
Confidence            999999999997 6777888888999999876  578889999999999999999874        3 577776  6778


Q ss_pred             EEEcCCCc
Q 020107          320 RIWMPESD  327 (331)
Q Consensus       320 ~iW~~~~~  327 (331)
                      .+|++.+.
T Consensus       296 ~~~~~~~~  303 (304)
T 2ynn_A          296 TVLSLGND  303 (304)
T ss_dssp             EEEECC--
T ss_pred             EEEEeccC
Confidence            88887653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.7e-44  Score=295.69  Aligned_cols=281  Identities=17%  Similarity=0.209  Sum_probs=218.6

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-ee-ecCcEeEEEEcCCCCCCCCeEEE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-RM-DTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +.+.+++|+|     ++||+|+          .|+.|++|++........... .. |...|.+++|+|+    +++|++
T Consensus        15 ~~v~~~~~s~-----~~las~~----------~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~----~~~las   75 (330)
T 2hes_X           15 EKIWSFDFSQ-----GILATGS----------TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH----TSLLAA   75 (330)
T ss_dssp             SCEEEEEEET-----TEEEEEE----------SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT----SSEEEE
T ss_pred             CceeeeccCC-----CEEEEEc----------CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC----CCEEEE
Confidence            4556666654     3899998          799999999987532222222 33 8999999999999    899999


Q ss_pred             EcCCccE-EEecCCC-------------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc--ceeeeeeeecccce
Q 020107           88 ADADGGL-LRDITGE-------------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES--QLEVLQQWKAHEFE  151 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~  151 (331)
                      ++.|+.+ +|++...             ..|...|.+++|+|++++|++|+.|++|++||++..  ..+.+..+.+|...
T Consensus        76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  155 (330)
T 2hes_X           76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD  155 (330)
T ss_dssp             EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred             EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence            9999999 9998431             236788999999999999999999999999999532  23456778899999


Q ss_pred             eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC--ceeeeecccCCCcceEEEEEecCC--CCEEEEEecCCeEEEEEecC
Q 020107          152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESP--FKLAFQNSKIHKMGVCCIASIPSD--SNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~iwd~~~  227 (331)
                      |.+++|+| ++.+|++++.|+.|++||.+++.  +...+..   |...|.+++|+| +  +.+|++++.|++|++||++.
T Consensus       156 v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~---h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          156 VKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNG---HEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECC---CSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEE
T ss_pred             eEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccC---CCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecC
Confidence            99999999 78999999999999999998763  3444444   999999999999 6  67899999999999999976


Q ss_pred             CCC-------CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE-eecCCc-ceeeeeecC--C
Q 020107          228 ISK-------PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET-YAKHGS-LAYGADWQR--G  296 (331)
Q Consensus       228 ~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~-~v~~~~~~~--~  296 (331)
                      ...       ....+...|...|++++|+++  +.+++++.++.+++|+......+.... ..+|.. .|.+++|+|  +
T Consensus       231 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~  308 (330)
T 2hes_X          231 DDEDDQQEWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNG  308 (330)
T ss_dssp             ECTTSCEEEEEEEECCSCCSSCEEEEEECTT--SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC----
T ss_pred             CCccccceeEEeeecccccccceEEEEEcCC--CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCC
Confidence            421       111111238899999999977  688888899999999987532233333 357887 899999999  4


Q ss_pred             CCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          297 RSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +         ++|++++ .||+|++|++++
T Consensus       309 ~---------~~las~s-~Dg~v~~W~~~~  328 (330)
T 2hes_X          309 K---------TILATGG-DDGIVNFWSLEK  328 (330)
T ss_dssp             ----------CCEEEEE-TTSEEEEEEC--
T ss_pred             c---------eEEEEec-CCCcEEEEEecc
Confidence            5         6999999 999999999875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.2e-44  Score=304.37  Aligned_cols=281  Identities=17%  Similarity=0.250  Sum_probs=231.9

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+.+.+++|+|.+   ++||+|+          .||+|++||+.+.+  .......|...|.+++|+|+    +++|++|
T Consensus        66 ~~~V~~~~~sp~~---~~l~s~s----------~D~~v~iWd~~~~~--~~~~~~~h~~~v~~~~~s~~----g~~las~  126 (380)
T 3iz6_a           66 SGKVYSLDWTPEK---NWIVSAS----------QDGRLIVWNALTSQ--KTHAIKLHCPWVMECAFAPN----GQSVACG  126 (380)
T ss_dssp             SSCEEEEEECTTS---SCEEEEE----------TTSEEEEEETTTTE--EEEEEECCCTTCCCCEECTT----SSEEEEC
T ss_pred             ccEEEEEEEcCCC---CEEEEEe----------CCCeEEEEECCCCc--cceEEecCCCCEEEEEECCC----CCEEEEe
Confidence            3456777777765   8999999          79999999998875  44455789999999999999    9999999


Q ss_pred             cCCccE-EEecCCC-------------cccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeee-----ecc
Q 020107           89 DADGGL-LRDITGE-------------KISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQW-----KAH  148 (331)
Q Consensus        89 ~~dg~i-iw~~~~~-------------~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~  148 (331)
                      +.|+.+ +|++...             ..|...+.++.|.|++ ..|++|+.|++|++||+++++.  +..+     .+|
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~--~~~~~~~~~~~h  204 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR--ISIFGSEFPSGH  204 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE--EEEECCCSSSSC
T ss_pred             eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE--EEEeecccCCCC
Confidence            999999 9998642             2367788899999975 5699999999999999998764  4444     578


Q ss_pred             cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC-CCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE-SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      ...|.+++|+|.++++|++|+.|+.|++||++. .+....+..   |...|.+++|+| ++.+|++++.|++|++||+++
T Consensus       205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~---h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG---HEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC---CSSCCCEEEECT-TSSEEEEECSSSCEEEEETTT
T ss_pred             ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC---cCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCC
Confidence            899999999887889999999999999999984 344555555   999999999999 999999999999999999998


Q ss_pred             CCCCceeeee------ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe----ecCCcceeeeeecCCC
Q 020107          228 ISKPVNETSV------CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY----AKHGSLAYGADWQRGR  297 (331)
Q Consensus       228 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~  297 (331)
                      + .++.....      .+...|++++|+|++ ..+++++.++.+++|++..  ++.+..+    .+|.+.|++++|+|++
T Consensus       281 ~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~--~~~~~~~~~~~~~h~~~v~~l~~s~dg  356 (380)
T 3iz6_a          281 G-HQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLL--AEMVLNLGTLQNSHEGRISCLGLSSDG  356 (380)
T ss_dssp             T-EEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTT--CCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred             C-cEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCC--CceEEEEecccCCCCCceEEEEECCCC
Confidence            5 33332111      122348999999997 6777777888899999866  4555555    5799999999999999


Q ss_pred             CcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          298 SSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       298 ~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                               .+|+||+ .|++|++|++....
T Consensus       357 ---------~~l~sgs-~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          357 ---------SALCTGS-WDKNLKIWAFSGHR  377 (380)
T ss_dssp             ---------SEEEEEC-TTSCEEEEECCSSS
T ss_pred             ---------CEEEEee-CCCCEEEEecCCCc
Confidence                     6999999 99999999998764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-42  Score=294.53  Aligned_cols=289  Identities=20%  Similarity=0.225  Sum_probs=233.7

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec------------------CcE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT------------------AGI   69 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~------------------~~v   69 (331)
                      +...+.+++|+|++   ++||+|+           ++.+++|++.++. .+..+ ..|.                  ..|
T Consensus        63 h~~~V~~v~fspdg---~~la~g~-----------~~~v~i~~~~~g~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v  126 (393)
T 1erj_A           63 HTSVVCCVKFSNDG---EYLATGC-----------NKTTQVYRVSDGS-LVARL-SDDSAANKDPENLNTSSSPSSDLYI  126 (393)
T ss_dssp             CSSCCCEEEECTTS---SEEEEEC-----------BSCEEEEETTTCC-EEEEE-CC-----------------CCCCBE
T ss_pred             CCCEEEEEEECCCC---CEEEEEc-----------CCcEEEEEecCCC-EEEEe-cCccccccccccccccccCCCceeE
Confidence            55678889998876   8999987           7899999998765 22222 2222                  249


Q ss_pred             eEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee
Q 020107           70 FDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL  142 (331)
Q Consensus        70 ~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  142 (331)
                      ++++|+|+    +++|++|+.|+.+ +|++.+.+.      |...|.+++|+|+++.|++++.|++|++||+++++.  .
T Consensus       127 ~~v~~s~d----g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~  200 (393)
T 1erj_A          127 RSVCFSPD----GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--S  200 (393)
T ss_dssp             EEEEECTT----SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--E
T ss_pred             EEEEECCC----CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee--E
Confidence            99999999    9999999999999 999987653      788999999999999999999999999999998754  4


Q ss_pred             eeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec----ccCCCcceEEEEEecCCCCEEEEEecCC
Q 020107          143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN----SKIHKMGVCCIASIPSDSNTLLTGSYDE  218 (331)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~  218 (331)
                      ..+. +...+.+++|+|.++.++++++.|+.|++||++++.....+..    ..+|...|.+++|+| ++.+|++++.|+
T Consensus       201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~  278 (393)
T 1erj_A          201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDR  278 (393)
T ss_dssp             EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCC
Confidence            4444 5567999999987889999999999999999998876555521    134899999999999 999999999999


Q ss_pred             eEEEEEecCCCC----------CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce
Q 020107          219 YLRVWDVRSISK----------PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA  288 (331)
Q Consensus       219 ~i~iwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  288 (331)
                      .|++||+++...          .....+.+|...|.+++|+|++ ..+++++.++.+++|++..  ++.+..+.+|...|
T Consensus       279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~--~~~~~~l~~h~~~v  355 (393)
T 1erj_A          279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKS--GNPLLMLQGHRNSV  355 (393)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTT--CCEEEEEECCSSCE
T ss_pred             EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCC--CeEEEEECCCCCCE
Confidence            999999986422          1122346799999999999996 6777777888889998776  57888899999999


Q ss_pred             eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .+++|++...   .++++++|+|++ .||+|++|++.+.
T Consensus       356 ~~v~~~~~~~---~~p~~~~l~sgs-~Dg~i~iW~~~~~  390 (393)
T 1erj_A          356 ISVAVANGSS---LGPEYNVFATGS-GDCKARIWKYKKI  390 (393)
T ss_dssp             EEEEECSSCT---TCTTCEEEEEEE-TTSEEEEEEEEEC
T ss_pred             EEEEecCCcC---cCCCCCEEEEEC-CCCcEEECccccc
Confidence            9999987531   223447999999 9999999998654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-42  Score=285.47  Aligned_cols=249  Identities=17%  Similarity=0.240  Sum_probs=216.6

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      +...+.+|.+.|++++|+|+    +++|++++.||.+ +|++.+...      |..+|.+++|+|++++|++|+.|+.|+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~----~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPT----EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSS----SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             eEEeecCCCCceEEEEECCC----CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence            45567899999999999999    9999999999999 999987643      678899999999999999999999999


Q ss_pred             EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCC
Q 020107          131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSN  209 (331)
Q Consensus       131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~  209 (331)
                      +||+.+++.  +..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++.. ...+..   |...|.+++|+|.++.
T Consensus        81 vwd~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~  154 (304)
T 2ynn_A           81 VFNYNTGEK--VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEG---HEHFVMCVAFNPKDPS  154 (304)
T ss_dssp             EEETTTCCE--EEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECC---CCSCEEEEEECTTCTT
T ss_pred             EEECCCCcE--EEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcc---cCCcEEEEEECCCCCC
Confidence            999998754  778899999999999999 788999999999999999997743 333444   9999999999996678


Q ss_pred             EEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC-CeEEEEEecCcEEEEEEcCcccceeEEeecCCcce
Q 020107          210 TLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP-GLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA  288 (331)
Q Consensus       210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  288 (331)
                      +|++|+.|++|++||++.. .+.......|...+..+.|+|..+ .++++++.++.+++|++..  ++.+.++.+|...|
T Consensus       155 ~l~sgs~D~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~--~~~~~~~~~h~~~v  231 (304)
T 2ynn_A          155 TFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT--KSCVATLEGHMSNV  231 (304)
T ss_dssp             EEEEEETTSEEEEEETTCS-SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT--TEEEEEEECCSSCE
T ss_pred             EEEEEeCCCeEEEEECCCC-CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC--CccceeeCCCCCCE
Confidence            9999999999999999875 444443456778899999998432 5677777888899999876  58889999999999


Q ss_pred             eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ..++|+|++         .+|++++ .||+|++||+.++.+
T Consensus       232 ~~~~~~p~~---------~~l~s~s-~Dg~i~iWd~~~~~~  262 (304)
T 2ynn_A          232 SFAVFHPTL---------PIIISGS-EDGTLKIWNSSTYKV  262 (304)
T ss_dssp             EEEEECSSS---------SEEEEEE-TTSCEEEEETTTCCE
T ss_pred             EEEEECCCC---------CEEEEEc-CCCeEEEEECCCCce
Confidence            999999998         6999999 999999999987653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.3e-42  Score=310.24  Aligned_cols=286  Identities=16%  Similarity=0.278  Sum_probs=231.1

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+.+++|+|.++  .+|++|+          .|+.|++||....+  ....+.+|...|++++|+|+    +++|++++
T Consensus       148 ~~v~~v~f~p~~~--~~l~s~s----------~D~~v~lwd~~~~~--~~~~l~~H~~~V~~v~fspd----g~~las~s  209 (611)
T 1nr0_A          148 RAMNSVDFKPSRP--FRIISGS----------DDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPD----GSLFASTG  209 (611)
T ss_dssp             SCEEEEEECSSSS--CEEEEEE----------TTSCEEEEETTTBE--EEEEECCCSSCEEEEEECTT----SSEEEEEE
T ss_pred             CCceEEEECCCCC--eEEEEEe----------CCCeEEEEECCCCe--EeeeeccccCceEEEEECCC----CCEEEEEE
Confidence            4567888888763  4799998          79999999987764  44556889999999999999    99999999


Q ss_pred             CCccE-EEecCCCc-------------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee---------------
Q 020107           90 ADGGL-LRDITGEK-------------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE---------------  140 (331)
Q Consensus        90 ~dg~i-iw~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------------  140 (331)
                      .|+.+ +|++.+++             .|...|.+++|+|++++|++++.|++|++||+.+++..               
T Consensus       210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~  289 (611)
T 1nr0_A          210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG  289 (611)
T ss_dssp             TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred             CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence            99999 99976542             47789999999999999999999999999999875421               


Q ss_pred             --------------------------eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec----
Q 020107          141 --------------------------VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN----  190 (331)
Q Consensus       141 --------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----  190 (331)
                                                ....+.+|...|++++|+| ++++|++++.|+.|++||+.++.....+..    
T Consensus       290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~  368 (611)
T 1nr0_A          290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHAT  368 (611)
T ss_dssp             EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred             EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence                                      1234457889999999999 889999999999999999987643221100    


Q ss_pred             ---------------------------------------------------------------------------ccCCC
Q 020107          191 ---------------------------------------------------------------------------SKIHK  195 (331)
Q Consensus       191 ---------------------------------------------------------------------------~~~~~  195 (331)
                                                                                                 ...|.
T Consensus       369 ~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~  448 (611)
T 1nr0_A          369 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS  448 (611)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred             eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence                                                                                       00123


Q ss_pred             cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc
Q 020107          196 MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA  275 (331)
Q Consensus       196 ~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (331)
                      ..+.+++|+| ++++|++|+.|++|++||+......... ...|...|++++|+|++ .++++++.++.+++|++... +
T Consensus       449 ~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~-~~~h~~~v~~v~fspdg-~~las~s~d~~v~~w~~~~~-~  524 (611)
T 1nr0_A          449 YNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVK-TIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANN-F  524 (611)
T ss_dssp             SCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEE-EEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGT-T
T ss_pred             CCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeee-ccCCCCceEEEEECCCC-CEEEEEcCCCCEEEEEcCCC-C
Confidence            4578899999 9999999999999999999874211112 26799999999999997 77888888899999998753 2


Q ss_pred             ceeEE--eecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          276 EVLET--YAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       276 ~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +....  +.+|...|++++|+|++         ++||+++ .|++|++|+++++.
T Consensus       525 ~~~~~~~~~~H~~~V~~v~fspdg---------~~lasgs-~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          525 ELAHTNSWTFHTAKVACVSWSPDN---------VRLATGS-LDNSVIVWNMNKPS  569 (611)
T ss_dssp             EESCCCCCCCCSSCEEEEEECTTS---------SEEEEEE-TTSCEEEEETTCTT
T ss_pred             ceeeeeeeeecccceeEEEECCCC---------CEEEEEE-CCCcEEEEECCCcc
Confidence            33332  34599999999999999         7999999 99999999998753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.6e-42  Score=286.18  Aligned_cols=282  Identities=16%  Similarity=0.234  Sum_probs=233.7

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      .+.|.+|+|+|..+  ++||+|+          .||+|+|||+...+..   ....+.+|...|.+++|+|+    +++|
T Consensus        38 ~~~V~~v~~sp~~~--~~l~S~s----------~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d----g~~l  101 (340)
T 4aow_A           38 NGWVTQIATTPQFP--DMILSAS----------RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD----GQFA  101 (340)
T ss_dssp             SSCEEEEEECTTCT--TEEEEEE----------TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT----SSEE
T ss_pred             cCCEEEEEEeCCCC--CEEEEEc----------CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC----CCEE
Confidence            34567788887654  7999999          7999999999865422   33445789999999999999    9999


Q ss_pred             EEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107           86 AQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus        86 ~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  158 (331)
                      ++++.|+.+ +|+......      +...+..+.++++++.|++++.|+.+++||+.... .......+|...+..++|+
T Consensus       102 ~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~-~~~~~~~~~~~~v~~~~~~  180 (340)
T 4aow_A          102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC-KYTVQDESHSEWVSCVRFS  180 (340)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSSSCSSCEEEEEEC
T ss_pred             EEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc-eEEEEeccccCcccceEEc
Confidence            999999999 898877544      46678888999999999999999999999987654 3345566789999999998


Q ss_pred             CCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee
Q 020107          159 VHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV  237 (331)
Q Consensus       159 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  237 (331)
                      +.. ..++++++.|+.|++||+++++....+..   |...|++++|+| ++++|++|+.|+.|++||+++. +++..  .
T Consensus       181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~---h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~-~~~~~--~  253 (340)
T 4aow_A          181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG---HTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEG-KHLYT--L  253 (340)
T ss_dssp             SCSSSCEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-EEEEE--E
T ss_pred             cCCCCcEEEEEcCCCEEEEEECCCCceeeEecC---CCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccC-ceeee--e
Confidence            743 35788999999999999999887766665   999999999999 9999999999999999999985 45554  5


Q ss_pred             ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE---------EeecCCcceeeeeecCCCCcccccccCcE
Q 020107          238 CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE---------TYAKHGSLAYGADWQRGRSSLEGKRKNSL  308 (331)
Q Consensus       238 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  308 (331)
                      .+...|.+++|+|+  +.+++++.++.+++|++...  ..+.         ...+|...|++++|+|++         ++
T Consensus       254 ~~~~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg---------~~  320 (340)
T 4aow_A          254 DGGDIINALCFSPN--RYWLCAATGPSIKIWDLEGK--IIVDELKQEVISTSSKAEPPQCTSLAWSADG---------QT  320 (340)
T ss_dssp             ECSSCEEEEEECSS--SSEEEEEETTEEEEEETTTT--EEEEEECCC-------CCCCCEEEEEECTTS---------SE
T ss_pred             cCCceEEeeecCCC--CceeeccCCCEEEEEECCCC--eEEEeccccceeeeccCCCCCEEEEEECCCC---------CE
Confidence            66788999999998  67888889999999998753  3332         234788999999999998         69


Q ss_pred             EEEeecCCCeEEEEcCCCcc
Q 020107          309 VATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       309 l~s~~~~d~~i~iW~~~~~~  328 (331)
                      |++|+ .||.|+|||+++|.
T Consensus       321 l~sgs-~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          321 LFAGY-TDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEE-TTSCEEEEEEEC--
T ss_pred             EEEEe-CCCEEEEEeCCCcC
Confidence            99999 99999999999885

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-41  Score=281.39  Aligned_cols=278  Identities=19%  Similarity=0.304  Sum_probs=232.0

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+.+++|+|.+   ++||+|+          .||.|++|++.+.+  ......+|...|.+++|+|+    +++|++++
T Consensus        24 ~~v~~~~~s~~~---~~l~s~~----------~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~----~~~l~s~~   84 (312)
T 4ery_A           24 KAVSSVKFSPNG---EWLASSS----------ADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD----SNLLVSAS   84 (312)
T ss_dssp             SCEEEEEECTTS---SEEEEEE----------TTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTT----SSEEEEEE
T ss_pred             CcEEEEEECCCC---CEEEEee----------CCCeEEEEeCCCcc--cchhhccCCCceEEEEEcCC----CCEEEEEC
Confidence            346667777655   8999998          79999999998775  44556789999999999999    89999999


Q ss_pred             CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      .|+.+ +|++.+.+.      |...|.+++|+|++++|++|+.||.|++||+++++.  +..+..|..+|.+++|+| ++
T Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~  161 (312)
T 4ery_A           85 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNR-DG  161 (312)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECT-TS
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE--EEEecCCCCcEEEEEEcC-CC
Confidence            99999 999987653      678899999999999999999999999999998754  677888999999999998 88


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG  242 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  242 (331)
                      .++++++.|+.|++||+++++....+..  .+...+..++|+| ++.+|++++.|+.|++||+++. +.+.. +..|...
T Consensus       162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~-~~~~~~~  236 (312)
T 4ery_A          162 SLIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKG-KCLKT-YTGHKNE  236 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECC--SSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTT-EEEEE-ECSSCCS
T ss_pred             CEEEEEeCCCcEEEEECCCCceeeEEec--cCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC-cEEEE-EEecCCc
Confidence            9999999999999999998876555432  3677899999999 9999999999999999999985 33333 3455544


Q ss_pred             eE--EEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec-CCCeE
Q 020107          243 VW--RIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF-YDRLL  319 (331)
Q Consensus       243 v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-~d~~i  319 (331)
                      +.  ...+++.+...+++++.++.+++|++..  ++.+..+.+|...|.+++|+|++         .+|++++. .|++|
T Consensus       237 ~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~p~~---------~~l~s~~~~~d~~i  305 (312)
T 4ery_A          237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT--KEIVQKLQGHTDVVISTACHPTE---------NIIASAALENDKTI  305 (312)
T ss_dssp             SSCCCEEEECSSSCEEEECCTTSCEEEEETTT--CCEEEEECCCSSCEEEEEECSSS---------SEEEEEECTTTCCE
T ss_pred             eEEEEEEEEeCCCcEEEEECCCCEEEEEECCC--chhhhhhhccCCcEEEEeecCcC---------CceEEEEccCCccE
Confidence            32  2345544436777777888899999876  57888999999999999999998         68888751 49999


Q ss_pred             EEEcCC
Q 020107          320 RIWMPE  325 (331)
Q Consensus       320 ~iW~~~  325 (331)
                      ++|+.+
T Consensus       306 ~~W~~d  311 (312)
T 4ery_A          306 KLWKSD  311 (312)
T ss_dssp             EEEECC
T ss_pred             EEecCC
Confidence            999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.9e-42  Score=310.73  Aligned_cols=280  Identities=15%  Similarity=0.160  Sum_probs=234.2

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+.+.+|+|+|.+   ++||+++           ++.|++|++.+..  ....+.+|...|++++|+|+    +++||+|
T Consensus        18 ~g~~~~~~~spdg---~~l~~~~-----------~~~v~l~~~~~~~--~~~~~~~h~~~v~~~~~spd----g~~lasg   77 (611)
T 1nr0_A           18 RGTAVVLGNTPAG---DKIQYCN-----------GTSVYTVPVGSLT--DTEIYTEHSHQTTVAKTSPS----GYYCASG   77 (611)
T ss_dssp             TTCCCCCEECTTS---SEEEEEE-----------TTEEEEEETTCSS--CCEEECCCSSCEEEEEECTT----SSEEEEE
T ss_pred             cCceeEEeeCCCC---CEEEeCC-----------CCEEEEecCCCcc--cCeEecCCCCceEEEEECCC----CcEEEEE
Confidence            5678889998877   8999997           7799999998664  44556889999999999999    9999999


Q ss_pred             cCCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecC----CeEEEEEccccceeeeeeeecccceeEEE
Q 020107           89 DADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSD----GSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      +.||.+ +|++.+.+        .|...|.+++|+|+++.|++++.+    +.|++||..  +  ....+.+|...|+++
T Consensus        78 ~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~--~~~~l~gh~~~v~~v  153 (611)
T 1nr0_A           78 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--T--SNGNLTGQARAMNSV  153 (611)
T ss_dssp             ETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--C--BCBCCCCCSSCEEEE
T ss_pred             eCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--C--CcceecCCCCCceEE
Confidence            999999 99986432        267899999999999999998865    478888853  2  356788999999999


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  235 (331)
                      +|+|+....|++++.|++|++||.++++....+..   |...|.+++|+| ++++|++++.|++|++||++++ +....+
T Consensus       154 ~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~---H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g-~~~~~~  228 (611)
T 1nr0_A          154 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE---HTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG-TKTGVF  228 (611)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEEC
T ss_pred             EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc---ccCceEEEEECC-CCCEEEEEECCCcEEEEECCCC-cEeeee
Confidence            99995445799999999999999988766666655   999999999999 9999999999999999999875 333331


Q ss_pred             ee------ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-----------------------------------
Q 020107          236 SV------CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-----------------------------------  274 (331)
Q Consensus       236 ~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  274 (331)
                      ..      .|.+.|.+++|+|++ ..+++++.|+.+++|++....                                   
T Consensus       229 ~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~  307 (611)
T 1nr0_A          229 EDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN  307 (611)
T ss_dssp             BCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred             ccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence            12      799999999999997 677888888889999986421                                   


Q ss_pred             ------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          275 ------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       275 ------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                            ++....+.+|...|++++|+|++         ++|++++ .|++|++||+.++.
T Consensus       308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg---------~~l~s~s-~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          308 FVNPELGSIDQVRYGHNKAITALSSSADG---------KTLFSAD-AEGHINSWDISTGI  357 (611)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTS---------SEEEEEE-TTSCEEEEETTTCC
T ss_pred             EEeCCCCCcceEEcCCCCCEEEEEEeCCC---------CEEEEEe-CCCcEEEEECCCCc
Confidence                  11234556899999999999998         7999999 99999999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.6e-43  Score=300.84  Aligned_cols=288  Identities=17%  Similarity=0.227  Sum_probs=225.1

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      ++..+.+|+|+|..+  ++||+|+          .||.|+|||+...+........+|.+.|++|+|+|.+   +.+|++
T Consensus       118 ~~~~V~~l~~~P~~~--~~lasGs----------~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~---~~~l~s  182 (435)
T 4e54_B          118 FDRRATSLAWHPTHP--STVAVGS----------KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN---TNQFYA  182 (435)
T ss_dssp             CSSCEEEEEECSSCT--TCEEEEE----------TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC---TTEEEE
T ss_pred             CCCCEEEEEEeCCCC--CEEEEEe----------CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC---CCEEEE
Confidence            455689999999765  7999999          8999999999877634444456899999999999853   779999


Q ss_pred             EcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107           88 ADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  158 (331)
                      ++.||++ +|++.+...        +...+.+++|+|++++|++|+.||.|++||++..   .+..+.+|...|++++|+
T Consensus       183 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~---~~~~~~~h~~~v~~v~~~  259 (435)
T 4e54_B          183 SSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK---ELWNLRMHKKKVTHVALN  259 (435)
T ss_dssp             ECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC---BCCCSBCCSSCEEEEEEC
T ss_pred             EeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc---eeEEEecccceEEeeeec
Confidence            9999999 999986543        2455788999999999999999999999999753   356778899999999999


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC  238 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  238 (331)
                      |....++++++.|+.|++||+++.+....+....+|...|++++|+| ++.+|++++.|+.|++||++++..+...  ..
T Consensus       260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~--~~  336 (435)
T 4e54_B          260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGL--IP  336 (435)
T ss_dssp             TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEE--CC
T ss_pred             CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEE--ec
Confidence            96667899999999999999998776655544456999999999999 9999999999999999999986443332  33


Q ss_pred             cCC------ceEEEEECCCCCCeEEEEEe------------cCcEEEEEEcCcccceeEEee-cCCcceeee-eecCCCC
Q 020107          239 LGG------GVWRIKHHPFIPGLVLAACM------------HNGFAVVKVGGEKAEVLETYA-KHGSLAYGA-DWQRGRS  298 (331)
Q Consensus       239 ~~~------~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~-~~~~~~~  298 (331)
                      |..      .+....|+|++ ..+++++.            ++.+++|+...  ++.+..+. +|...|.++ +|+|++ 
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~--g~~~~~l~~~~~~~v~s~~~fspdg-  412 (435)
T 4e54_B          337 HPHRHFQHLTPIKAAWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDVFDGNS--GKMMCQLYDPESSGISSLNEFNPMG-  412 (435)
T ss_dssp             CCCCCCSSSCCCBCEECSSS-SCEEEECCCCTTSCCSSTTCCCCEEEECSSS--CCEEEEECCSSCCCCCCEEEECTTS-
T ss_pred             ccccccccceeEEEEEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEEEECCC--CcEEEEEeCCCCCcEEEEEEECCCC-
Confidence            322      23456677765 33444332            23467777655  56666654 688889887 699998 


Q ss_pred             cccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107          299 SLEGKRKNSLVATCSFYDRLLRIWMPESDCLT  330 (331)
Q Consensus       299 ~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~  330 (331)
                              .+|++|+  |+.|+||+++++...
T Consensus       413 --------~~lasg~--d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          413 --------DTLASAM--GYHILIWSQQEARTR  434 (435)
T ss_dssp             --------SCEEEEC--SSEEEECCCC-----
T ss_pred             --------CEEEEEc--CCcEEEEECCcCeee
Confidence                    6888875  889999999988643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.9e-41  Score=305.56  Aligned_cols=281  Identities=15%  Similarity=0.230  Sum_probs=229.0

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc---ceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK---NLELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      .+.+.+|+|+|.++  ++|++|+          .||.|++|++.....   .....+.+|...|.+++|+|+    +++|
T Consensus       382 ~~~V~~v~~~~~~~--~~l~s~s----------~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----g~~l  445 (694)
T 3dm0_A          382 TDMVTAIATPIDNA--DIIVSAS----------RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD----GQFA  445 (694)
T ss_dssp             SSCEEEEECCTTCC--SEEEEEE----------TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT----SSEE
T ss_pred             CceeEEEEecCCCC--CEEEEEe----------CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC----CCEE
Confidence            44566777776543  7999999          899999999976432   133455789999999999999    9999


Q ss_pred             EEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee-eeeecccceeEEEee
Q 020107           86 AQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL-QQWKAHEFELWATSF  157 (331)
Q Consensus        86 ~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~  157 (331)
                      ++|+.||.+ +|++.+...      |...|.+++|+|+++.|++++.|++|++||........+ ....+|...|.+++|
T Consensus       446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  525 (694)
T 3dm0_A          446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF  525 (694)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE
T ss_pred             EEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE
Confidence            999999999 999987643      788999999999999999999999999999865432111 122468889999999


Q ss_pred             CCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107          158 DVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       158 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  236 (331)
                      +|+. ...+++++.|+.|++||+++.+....+..   |...|++++|+| ++++|++++.|+.|++||++++ +.+..  
T Consensus       526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~---h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~-~~~~~--  598 (694)
T 3dm0_A          526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG---HTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEG-KKLYS--  598 (694)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTT-EEEEC--
T ss_pred             eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC---CCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-ceEEE--
Confidence            9843 35899999999999999998887766665   999999999999 9999999999999999999985 44444  


Q ss_pred             eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC-------------------CcceeeeeecCCC
Q 020107          237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH-------------------GSLAYGADWQRGR  297 (331)
Q Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------------------~~~v~~~~~~~~~  297 (331)
                      ..+...|.+++|+|+  +.+++++.++++++|++...  +.+..+..+                   ...+++++|+|++
T Consensus       599 ~~~~~~v~~~~~sp~--~~~l~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg  674 (694)
T 3dm0_A          599 LEANSVIHALCFSPN--RYWLCAATEHGIKIWDLESK--SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG  674 (694)
T ss_dssp             CBCSSCEEEEEECSS--SSEEEEEETTEEEEEETTTT--EEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred             ecCCCcEEEEEEcCC--CcEEEEEcCCCEEEEECCCC--CChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence            456778999999999  66777888899999998763  444444322                   1237899999999


Q ss_pred             CcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          298 SSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       298 ~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                               ++|++|+ .||.|++|++..
T Consensus       675 ---------~~l~sgs-~Dg~i~iW~i~~  693 (694)
T 3dm0_A          675 ---------STLFSGY-TDGVIRVWGIGR  693 (694)
T ss_dssp             ---------SEEEEEE-TTSEEEEEEC--
T ss_pred             ---------CEEEEEc-CCCeEEEEeccC
Confidence                     7999999 999999999863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-40  Score=278.17  Aligned_cols=281  Identities=15%  Similarity=0.154  Sum_probs=236.4

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+.+.+++|+|.+   ++|++|+          .||.|++||+.+.+  ....+.+|...|.+++|+|+    +++|+++
T Consensus        32 ~~~v~~~~~s~~~---~~l~~~~----------~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~----~~~l~s~   92 (369)
T 3zwl_B           32 ERPLTQVKYNKEG---DLLFSCS----------KDSSASVWYSLNGE--RLGTLDGHTGTIWSIDVDCF----TKYCVTG   92 (369)
T ss_dssp             SSCEEEEEECTTS---CEEEEEE----------SSSCEEEEETTTCC--EEEEECCCSSCEEEEEECTT----SSEEEEE
T ss_pred             eceEEEEEEcCCC---CEEEEEe----------CCCEEEEEeCCCch--hhhhhhhcCCcEEEEEEcCC----CCEEEEE
Confidence            4456677777655   8999998          79999999998875  44455789999999999999    8999999


Q ss_pred             cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecC-----CeEEEEEccccce---------eeeeeeecc
Q 020107           89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSD-----GSVSIVSVVESQL---------EVLQQWKAH  148 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~---------~~~~~~~~~  148 (331)
                      +.||.+ +|++.+.+.     +...+.+++|+|+++.+++++.+     |.|++||+.....         .....+..|
T Consensus        93 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  172 (369)
T 3zwl_B           93 SADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH  172 (369)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred             eCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence            999999 999987654     57889999999999999999998     9999999987532         123344555


Q ss_pred             cc--eeEEEeeCCCCCcEEEEEcCCCeEEEEEccC-CCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEe
Q 020107          149 EF--ELWATSFDVHQPHMVYTGSDDCKFSGWDIRE-SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDV  225 (331)
Q Consensus       149 ~~--~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~  225 (331)
                      ..  .+.+++|+| +++++++++.||.|++||+++ .+....+..   |...|.+++|+| ++.+|++++.|+.|++||+
T Consensus       173 ~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          173 EGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDL---HEKSISDMQFSP-DLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             TTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred             cCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEec---CCCceeEEEECC-CCCEEEEecCCceEEEEEC
Confidence            55  899999999 788999999999999999998 555555655   899999999999 9999999999999999999


Q ss_pred             cCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC--------------cEEEEEEcCcccceeEEeecCCcceeee
Q 020107          226 RSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN--------------GFAVVKVGGEKAEVLETYAKHGSLAYGA  291 (331)
Q Consensus       226 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~h~~~v~~~  291 (331)
                      ++. +.+..  ..+...+..++|+|++ ..+++++.++              .+++|++..  ++.+..+.+|...|+++
T Consensus       248 ~~~-~~~~~--~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~v~~~  321 (369)
T 3zwl_B          248 STL-QVLKK--YETDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIF--EEEIGRVQGHFGPLNTV  321 (369)
T ss_dssp             TTC-CEEEE--EECSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTT--CCEEEEEECCSSCEEEE
T ss_pred             CCC-ceeee--ecCCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCC--CcchhheecccCcEEEE
Confidence            985 44554  4588999999999997 6666666666              567777665  57888899999999999


Q ss_pred             eecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +|+|++         ++|++++ .||.|++|+++++.+
T Consensus       322 ~~s~~~---------~~l~s~~-~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          322 AISPQG---------TSYASGG-EDGFIRLHHFEKSYF  349 (369)
T ss_dssp             EECTTS---------SEEEEEE-TTSEEEEEEECHHHH
T ss_pred             EECCCC---------CEEEEEc-CCCeEEEEECccccc
Confidence            999998         6999999 999999999987643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.6e-42  Score=290.44  Aligned_cols=289  Identities=11%  Similarity=0.091  Sum_probs=220.5

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      ..+++.+++|+|.+   ++||+|+          .||.|++|++.+........+.+|...|.+++|+|+    +++|++
T Consensus        10 ~~~~v~~~~~s~~g---~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s   72 (377)
T 3dwl_C           10 LPKPSYEHAFNSQR---TEFVTTT----------ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK----SNRIVT   72 (377)
T ss_dssp             CSSCCSCCEECSSS---SEEECCC----------SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT----TCCEEE
T ss_pred             CCCcEEEEEECCCC---CEEEEec----------CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC----CCEEEE
Confidence            46789999999976   8999997          799999999997631233345789999999999999    899999


Q ss_pred             EcCCccE-EEecCCCc---------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc-eeeeeeeec-ccceeEEE
Q 020107           88 ADADGGL-LRDITGEK---------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ-LEVLQQWKA-HEFELWAT  155 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~-~~~~v~~~  155 (331)
                      ++.|+.+ +|++.+..         .|...|.+++|+|+++.|++++.|+.|++||+++++ ......+.. |...|+++
T Consensus        73 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~  152 (377)
T 3dwl_C           73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL  152 (377)
T ss_dssp             EETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred             EeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence            9999999 99998765         267899999999999999999999999999998864 123556666 99999999


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCc---------------eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeE
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPF---------------KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYL  220 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  220 (331)
                      +|+| ++++|++++.|+.|++||++....               ....... .|...|.+++|+| ++++|++++.|+.|
T Consensus       153 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i  229 (377)
T 3dwl_C          153 DWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSV  229 (377)
T ss_dssp             EECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEE
T ss_pred             EEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcE
Confidence            9999 789999999999999999963221               1111112 4899999999999 99999999999999


Q ss_pred             EEEEecCCCCCc--eeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccce---------------------
Q 020107          221 RVWDVRSISKPV--NETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEV---------------------  277 (331)
Q Consensus       221 ~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  277 (331)
                      ++||+++...+.  ...+..|...|.+++|+|+  +.+++++.++++.+|+......+.                     
T Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (377)
T 3dwl_C          230 TIAYPSAPEQPPRALITVKLSQLPLRSLLWANE--SAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE  307 (377)
T ss_dssp             C-CEECSTTSCEEECCCEECSSSCEEEEEEEET--TEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCC
T ss_pred             EEEECCCCCCcceeeEeecCCCCceEEEEEcCC--CCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccccccc
Confidence            999999875421  2225789999999999999  567777888888787765321000                     


Q ss_pred             ----e---------EEe----------------ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          278 ----L---------ETY----------------AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       278 ----~---------~~~----------------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                          .         ..+                ..|...|+++.+.+...     .....|+|+| .||.|++||+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~-----~~~~~~~s~g-~Dg~i~iWdl  377 (377)
T 3dwl_C          308 GREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP-----GNITAFTSSG-TDGRVVLWTL  377 (377)
T ss_dssp             CCCC-------------------------CCCSSSCSSCEEEEEEEEEET-----TEEEEEEEEE-TTSEEEEECC
T ss_pred             ccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC-----CceEEEEeec-CCCcEEEecC
Confidence                0         111                12999999999877542     0012699999 9999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.3e-41  Score=286.43  Aligned_cols=245  Identities=16%  Similarity=0.216  Sum_probs=218.6

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIV  132 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  132 (331)
                      ..+.+|..+|++++|+|+    +.+|++|+.||.+ +|++.+++.      |...|.+++|+|++++|++|+.|++|++|
T Consensus       102 ~~l~gh~~~V~~~~~~p~----~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPV----FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW  177 (410)
T ss_dssp             CEEECCSSCEEEEEECSS----SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             EeecccCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            345789999999999999    8999999999999 999987654      67899999999999999999999999999


Q ss_pred             EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107          133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL  212 (331)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  212 (331)
                      |+.+.+  .+..+.+|...|.+++|+| +++++++++.|+.|++||++++.+...+..   |...|.++.++| ++.+|+
T Consensus       178 d~~~~~--~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~~~-~g~~l~  250 (410)
T 1vyh_C          178 DFQGFE--CIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTG---HREWVRMVRPNQ-DGTLIA  250 (410)
T ss_dssp             ETTSSC--EEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECT-TSSEEE
T ss_pred             eCCCCc--eeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeC---CCccEEEEEECC-CCCEEE
Confidence            998764  4778889999999999999 789999999999999999999988777776   999999999999 999999


Q ss_pred             EEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC-------------------CCeEEEEEecCcEEEEEEcCc
Q 020107          213 TGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI-------------------PGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       213 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      +|+.|+.|++||+++. ..... +..|...|.+++|+|+.                   ...+++++.++.+++|++.. 
T Consensus       251 s~s~D~~v~vwd~~~~-~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-  327 (410)
T 1vyh_C          251 SCSNDQTVRVWVVATK-ECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-  327 (410)
T ss_dssp             EEETTSCEEEEETTTC-CEEEE-ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-
T ss_pred             EEcCCCeEEEEECCCC-ceeeE-ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-
Confidence            9999999999999885 33333 57899999999999963                   24677777888899999876 


Q ss_pred             ccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          274 KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       274 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                       +..+.++.+|...|++++|+|++         ++|++++ .|+.|++||+.++..
T Consensus       328 -~~~~~~~~~h~~~v~~v~~~~~g---------~~l~s~s-~D~~i~vwd~~~~~~  372 (410)
T 1vyh_C          328 -GMCLMTLVGHDNWVRGVLFHSGG---------KFILSCA-DDKTLRVWDYKNKRC  372 (410)
T ss_dssp             -TEEEEEEECCSSCEEEEEECSSS---------SCEEEEE-TTTEEEEECCTTSCC
T ss_pred             -CceEEEEECCCCcEEEEEEcCCC---------CEEEEEe-CCCeEEEEECCCCce
Confidence             57888999999999999999998         6999999 999999999987643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.3e-40  Score=294.74  Aligned_cols=268  Identities=19%  Similarity=0.358  Sum_probs=228.5

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+.+++|+|.+   ++|++++          .||.|++|++....  +.. ..+|...|.+++|+|+    +++|++++
T Consensus       304 ~~v~~~~~~~~~---~~l~t~~----------~d~~i~~w~~~~~~--~~~-~~~~~~~v~~~~~s~~----g~~l~~~~  363 (577)
T 2ymu_A          304 SSVWGVAFSPDG---QTIASAS----------DDKTVKLWNRNGQH--LQT-LTGHSSSVWGVAFSPD----GQTIASAS  363 (577)
T ss_dssp             SCEEEEEECTTS---SEEEEEE----------TTSCEEEEETTSCE--EEE-ECCCSSCEEEEEECTT----SSEEEEEE
T ss_pred             CCeEEEEECCCC---CEEEEEe----------CCCeEEEEeCCCCe--eEE-EeCCCCCEEEEEECCC----CCEEEEEe
Confidence            455667777665   8999998          79999999987653  444 3678999999999999    99999999


Q ss_pred             CCccE-EEecCCCc-----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCc
Q 020107           90 ADGGL-LRDITGEK-----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH  163 (331)
Q Consensus        90 ~dg~i-iw~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (331)
                      .||.+ +|+.....     .|...|.+++|+|++++|++++.|+.|++||.. +  +.+..+.+|...|++++|+| ++.
T Consensus       364 ~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~--~~~~~~~~~~~~v~~~~~s~-d~~  439 (577)
T 2ymu_A          364 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G--QLLQTLTGHSSSVWGVAFSP-DDQ  439 (577)
T ss_dssp             TTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C--CEEEEEECCSSCEEEEEECT-TSS
T ss_pred             CCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C--CEEEEecCCCCCeEEEEECC-CCC
Confidence            99999 99975432     267889999999999999999999999999964 3  33677889999999999999 789


Q ss_pred             EEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCce
Q 020107          164 MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV  243 (331)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  243 (331)
                      +|++++.|+.|++||.. ++....+..   |...|.+++|+| ++.+|++++.|+.|++||...  +.+.. +..|...|
T Consensus       440 ~l~~~~~d~~v~~w~~~-~~~~~~~~~---~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~~--~~~~~-~~~h~~~v  511 (577)
T 2ymu_A          440 TIASASDDKTVKLWNRN-GQLLQTLTG---HSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNG--QLLQT-LTGHSSSV  511 (577)
T ss_dssp             EEEEEETTSEEEEEETT-SCEEEEEEC---CSSCEEEEEECT-TSCEEEEEETTSEEEEEETTS--CEEEE-EECCSSCE
T ss_pred             EEEEEcCCCEEEEEECC-CCEEEEEcC---CCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCCC--CEEEE-EeCCCCCE
Confidence            99999999999999975 444555555   999999999999 999999999999999999642  34443 57899999


Q ss_pred             EEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107          244 WRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~  323 (331)
                      ++++|+|++ .++++++.++.+++|+.   .++.+.++.+|.+.|++++|+|++         ++|+|++ .|++|++||
T Consensus       512 ~~l~~s~dg-~~l~s~~~dg~v~lwd~---~~~~~~~~~~h~~~v~~~~fs~dg---------~~l~s~~-~D~~i~~Wd  577 (577)
T 2ymu_A          512 RGVAFSPDG-QTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDG---------QTIASAS-SDKTVKLWN  577 (577)
T ss_dssp             EEEEECTTS-SCEEEEETTSEEEEECT---TSCEEEEEECCSSCEEEEEECTTS---------SCEEEEE-TTSCEEEEC
T ss_pred             EEEEEcCCC-CEEEEEECcCEEEEEeC---CCCEEEEEcCCCCCEEEEEEcCCC---------CEEEEEe-CCCEEEEeC
Confidence            999999997 66777777777777773   368889999999999999999998         7999999 999999997

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-40  Score=281.68  Aligned_cols=288  Identities=13%  Similarity=0.095  Sum_probs=233.6

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      .+.++.+++|+|.+   ++||+|+          .+|.|++|++.+.+......+.+|...|.+++|+|+    +++|++
T Consensus         7 ~~~~i~~~~~s~~~---~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~~   69 (372)
T 1k8k_C            7 LVEPISCHAWNKDR---TQIAICP----------NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD----SNRIVT   69 (372)
T ss_dssp             CSSCCCEEEECTTS---SEEEEEC----------SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT----TTEEEE
T ss_pred             cCCCeEEEEECCCC---CEEEEEe----------CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC----CCEEEE
Confidence            56789999999876   8999997          699999999988742244445789999999999999    899999


Q ss_pred             EcCCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee-e-eeeeecccceeEEEe
Q 020107           88 ADADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE-V-LQQWKAHEFELWATS  156 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~-~~~~~~~~~~v~~~~  156 (331)
                      ++.||.+ +|++.+.+        .+...|.+++|+|++++|++++.||.|++||++.++.. . ......|...|.+++
T Consensus        70 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  149 (372)
T 1k8k_C           70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD  149 (372)
T ss_dssp             EETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred             EcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence            9999999 99997764        26788999999999999999999999999999886521 1 222356788999999


Q ss_pred             eCCCCCcEEEEEcCCCeEEEEEcc------------------CCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC
Q 020107          157 FDVHQPHMVYTGSDDCKFSGWDIR------------------ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE  218 (331)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  218 (331)
                      |+| +++++++++.|+.|++||++                  .++....+..   |...|.+++|+| ++.+|++++.|+
T Consensus       150 ~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~  224 (372)
T 1k8k_C          150 WHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS---SCGWVHGVCFSA-NGSRVAWVSHDS  224 (372)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---CSSCEEEEEECS-SSSEEEEEETTT
T ss_pred             EcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC---CCCeEEEEEECC-CCCEEEEEeCCC
Confidence            999 78999999999999999964                  3444444444   899999999999 999999999999


Q ss_pred             eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC--cc----------------------
Q 020107          219 YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG--EK----------------------  274 (331)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------------  274 (331)
                      .|++||+++. +++.. +..|..+|.+++|+|+  +.+++++.++.+++|++..  ..                      
T Consensus       225 ~i~i~d~~~~-~~~~~-~~~~~~~v~~~~~~~~--~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (372)
T 1k8k_C          225 TVCLADADKK-MAVAT-LASETLPLLAVTFITE--SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE  300 (372)
T ss_dssp             EEEEEEGGGT-TEEEE-EECSSCCEEEEEEEET--TEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred             EEEEEECCCC-ceeEE-EccCCCCeEEEEEecC--CCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhh
Confidence            9999999985 44444 5788889999999999  5667777999999999977  21                      


Q ss_pred             --------ccee------EEe-ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          275 --------AEVL------ETY-AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       275 --------~~~~------~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                              ++..      ..+ .+|...|++++|.+...     .++.+|+|++ .||.|++|++.++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g-----~~~~~l~s~~-~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          301 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK-----AKCSQFCTTG-MDGGMSIWDVRSL  362 (372)
T ss_dssp             HHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT-----TSCSEEEEEE-TTSEEEEEEHHHH
T ss_pred             hhhhcccccccccCccccccccccccCCcceeEEecCCC-----cceeeEEEec-CCCceEEEEecCh
Confidence                    1111      223 48999999999774430     0114999999 9999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2e-41  Score=284.51  Aligned_cols=262  Identities=15%  Similarity=0.185  Sum_probs=199.7

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC------CccE-EEecCCCcc----------c
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA------DGGL-LRDITGEKI----------S  104 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~------dg~i-iw~~~~~~~----------~  104 (331)
                      .+.....|++....      ...|...|++++|+|+    +++|++++.      |+.+ +|+......          |
T Consensus        24 g~~~~~~w~~p~~~------p~~H~~~V~~v~fSpD----G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~   93 (357)
T 4g56_B           24 GSSKGSAWGRPVTA------PACMEVQIGAVRYRRD----GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT   93 (357)
T ss_dssp             ----------------------CCCSEEEEEEECSS----SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEEC
T ss_pred             CCccccccCCCCCC------cccccCCEEEEEECCC----CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCC
Confidence            36778899876543      2469999999999999    999999998      5566 887765432          5


Q ss_pred             CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeee--eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC
Q 020107          105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ--QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES  182 (331)
Q Consensus       105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  182 (331)
                      ...|.+++|+|++. +++++.||+|++||+.+++.....  ...+|...|++++|+| ++++|++++.|+.|++||++++
T Consensus        94 ~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~  171 (357)
T 4g56_B           94 EAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQK  171 (357)
T ss_dssp             SSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTT
T ss_pred             CCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCC
Confidence            67799999999875 556788999999999887543332  3447899999999999 8899999999999999999998


Q ss_pred             CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec
Q 020107          183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH  262 (331)
Q Consensus       183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  262 (331)
                      +....+..   |...|++++|+|....++++++.|+.|++||+++++.........+...+.+++|+|++..++++++.+
T Consensus       172 ~~~~~~~~---h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d  248 (357)
T 4g56_B          172 AVLKSYNA---HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET  248 (357)
T ss_dssp             EEEEEECC---CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred             cEEEEEcC---CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence            87777766   999999999999444689999999999999999864333322345778899999999876677777788


Q ss_pred             CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          263 NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +.+++|++..  ++.+.++.+|...|++++|+|++.        ++||+++ .|++|+|||++++.+
T Consensus       249 ~~i~~wd~~~--~~~~~~~~~~~~~v~~l~~sp~~~--------~~lasgs-~D~~i~iwd~~~~~~  304 (357)
T 4g56_B          249 GNVSLVNIKN--PDSAQTSAVHSQNITGLAYSYHSS--------PFLASIS-EDCTVAVLDADFSEV  304 (357)
T ss_dssp             SCEEEEESSC--GGGCEEECCCSSCEEEEEECSSSS--------CCEEEEE-TTSCEEEECTTSCEE
T ss_pred             cceeEEECCC--CcEeEEEeccceeEEEEEEcCCCC--------CEEEEEe-CCCEEEEEECCCCcE
Confidence            8899999887  578889999999999999999985        6899999 999999999988754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.1e-40  Score=278.40  Aligned_cols=291  Identities=17%  Similarity=0.279  Sum_probs=231.3

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCC---CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSR---NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~---~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   84 (331)
                      +...+.+++|+|.++  .++++|+          .   ||.|++|++.+.+ ........|...|.+++|+|+.++ +.+
T Consensus        17 h~~~v~~~~~~p~~~--~l~~~~s----------~~~~d~~v~iw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-~~~   82 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSA--KFVTMGN----------FARGTGVIQLYEIQHGD-LKLLREIEKAKPIKCGTFGATSLQ-QRY   82 (357)
T ss_dssp             CSSCEEEEEECTTSS--EEEEEEC------------CCCEEEEEEEECSSS-EEEEEEEEESSCEEEEECTTCCTT-TCC
T ss_pred             CCCceEEEEEcCCCc--eEEEecC----------ccCCCcEEEEEeCCCCc-ccceeeecccCcEEEEEEcCCCCC-Cce
Confidence            455788888988774  5677776          4   8999999999875 333334578999999999998322 479


Q ss_pred             EEEEcCCccE-EEecCCCc-------ccCccEEEEE------EcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc
Q 020107           85 LAQADADGGL-LRDITGEK-------ISSSMCLCLE------WNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF  150 (331)
Q Consensus        85 l~~~~~dg~i-iw~~~~~~-------~~~~~v~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  150 (331)
                      |++++.||.+ +|++.+.+       .|...|.++.      |+|+++.|++++.||.|++||+++++ .++..+..|..
T Consensus        83 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~  161 (357)
T 3i2n_A           83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD-DPVANMEPVQG  161 (357)
T ss_dssp             EEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS-SCSEEECCCTT
T ss_pred             EEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC-CcceeccccCC
Confidence            9999999999 99998765       2678899995      46889999999999999999999865 13555554443


Q ss_pred             ----eeEEEe----eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC--CCCEEEEEecCCeE
Q 020107          151 ----ELWATS----FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS--DSNTLLTGSYDEYL  220 (331)
Q Consensus       151 ----~v~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i  220 (331)
                          .+.+++    |+| ++.++++++.|+.|++||+++++.... ..   |...|.+++|+|.  ++.+|++++.|+.|
T Consensus       162 ~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  236 (357)
T 3i2n_A          162 ENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWE-TN---IKNGVCSLEFDRKDISMNKLVATSLEGKF  236 (357)
T ss_dssp             SCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEE-EE---CSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred             CCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeee-cC---CCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence                788888    677 789999999999999999998875333 33   7899999999985  57899999999999


Q ss_pred             EEEEecCCCCCceee----eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc-----------------ceeE
Q 020107          221 RVWDVRSISKPVNET----SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA-----------------EVLE  279 (331)
Q Consensus       221 ~iwd~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~  279 (331)
                      ++||+++. .+....    ...|...|++++|+|++..++++++.++.+++|++.....                 +.+.
T Consensus       237 ~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~  315 (357)
T 3i2n_A          237 HVFDMRTQ-HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ  315 (357)
T ss_dssp             EEEEEEEE-ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred             EEEeCcCC-CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence            99999985 333321    2379999999999999733677888888999999975321                 4677


Q ss_pred             EeecCCcceeeeeecCCCCcccccccCcEEE-EeecCCCeEEEEcCCCccc
Q 020107          280 TYAKHGSLAYGADWQRGRSSLEGKRKNSLVA-TCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       280 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~~~~d~~i~iW~~~~~~~  329 (331)
                      .+.+|...|++++|+|++         ++|+ +++ .|+.|++|++.+..+
T Consensus       316 ~~~~~~~~v~~~~~s~~~---------~~l~~s~~-~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          316 NVTLSTQPISSLDWSPDK---------RGLCVCSS-FDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEECCSSCEEEEEECSSS---------TTEEEEEE-TTSEEEEEEECC---
T ss_pred             ccccCCCCeeEEEEcCCC---------CeEEEEec-CCCcEEEEECCCccc
Confidence            888999999999999999         5676 899 999999999987643

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-41  Score=289.42  Aligned_cols=302  Identities=15%  Similarity=0.200  Sum_probs=242.2

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ...+.+++|+|.+.  .+||+|.+......+.+.||.|++|++.............|...|++++|+|+    +.+|+++
T Consensus        12 ~~~v~~~~~sp~g~--~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~   85 (416)
T 2pm9_A           12 FSRTATFAWSHDKI--PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHN----NKIIAGA   85 (416)
T ss_dssp             EEESCBCCBCSSSS--CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSS----SSCEEEE
T ss_pred             hhhcceEeeCCCCC--CEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCC----CCeEEEE
Confidence            34678889988863  49999943221111112799999999987652111112358889999999999    8999999


Q ss_pred             cCCccE-EEecCC----Cc------ccCccEEEEEEcCC-CCeEEEEecCCeEEEEEccccc------e-eeeeeeeccc
Q 020107           89 DADGGL-LRDITG----EK------ISSSMCLCLEWNPS-ATSITVGLSDGSVSIVSVVESQ------L-EVLQQWKAHE  149 (331)
Q Consensus        89 ~~dg~i-iw~~~~----~~------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~-~~~~~~~~~~  149 (331)
                      +.||.+ +|++..    ..      .|...|.+++|+|+ +++|++++.||.|++||+.+++      . .....+..|.
T Consensus        86 ~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  165 (416)
T 2pm9_A           86 LDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV  165 (416)
T ss_dssp             ESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred             ccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC
Confidence            999999 999987    21      26788999999998 8899999999999999998865      2 1122346788


Q ss_pred             ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc---cCCCcceEEEEEecCCCCEEEEEecCC---eEEEE
Q 020107          150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS---KIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVW  223 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iw  223 (331)
                      ..|.+++|+|+.+.++++++.|+.|++||+++++....+...   .+|...|.+++|+|....++++++.|+   .|++|
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence            999999999954889999999999999999998776666551   112788999999993347999999998   99999


Q ss_pred             EecCCCCCceeeee-ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccc
Q 020107          224 DVRSISKPVNETSV-CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEG  302 (331)
Q Consensus       224 d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  302 (331)
                      |+++...++.. +. .|...|.+++|+|....++++++.++.+++|++..  ++.+..+.+|...|++++|+|+++    
T Consensus       246 d~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~--~~~~~~~~~~~~~v~~~~~s~~~~----  318 (416)
T 2pm9_A          246 DLRNANTPLQT-LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES--AEQLSQFPARGNWCFKTKFAPEAP----  318 (416)
T ss_dssp             ETTSTTSCSBC-CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS--CCEEEEEECSSSCCCCEEECTTCT----
T ss_pred             eCCCCCCCcEE-eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC--CccceeecCCCCceEEEEECCCCC----
Confidence            99986555555 34 79999999999993337788888888889998876  578889999999999999999985    


Q ss_pred             cccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          303 KRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       303 ~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                          .+|++++ .|+.|++|++.+..
T Consensus       319 ----~~l~s~~-~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          319 ----DLFACAS-FDNKIEVQTLQNLT  339 (416)
T ss_dssp             ----TEEEECC-SSSEEEEEESCCCC
T ss_pred             ----CEEEEEe-cCCcEEEEEccCCC
Confidence                6999999 99999999998764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.9e-40  Score=275.51  Aligned_cols=242  Identities=13%  Similarity=0.103  Sum_probs=199.6

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--eEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--LELLYRMDTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~   84 (331)
                      ..+..+.+++|+|.+    .|++|+          .||.|+|||+.+++..  ......+|...|++++|+|+    +++
T Consensus        80 ~~~~~v~~~~~s~d~----~l~~~s----------~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd----g~~  141 (344)
T 4gqb_B           80 QTEAGVADLTWVGER----GILVAS----------DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS----GTQ  141 (344)
T ss_dssp             EESSCEEEEEEETTT----EEEEEE----------TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT----SSE
T ss_pred             ccCCCEEEEEEeCCC----eEEEEE----------CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC----CCE
Confidence            345678999999864    677777          7999999999887532  23344579999999999999    999


Q ss_pred             EEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107           85 LAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        85 l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  156 (331)
                      |++|+.|+.+ +|++.+.+.      |...|.+++|++++. .|++++.|++|++||+++++.........+...+.+++
T Consensus       142 l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  221 (344)
T 4gqb_B          142 AVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA  221 (344)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence            9999999999 999988654      788999999999885 57899999999999999876533223345666799999


Q ss_pred             eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC-CEEEEEecCCeEEEEEecCCCCCceee
Q 020107          157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS-NTLLTGSYDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~  235 (331)
                      |+|.+++++++|+.||.|++||+++++.+..+..   |...|++++|+| ++ .+|++|+.|++|++||+++. +.+.  
T Consensus       222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---h~~~v~~v~fsp-~g~~~lasgs~D~~i~vwd~~~~-~~~~--  294 (344)
T 4gqb_B          222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---HSQCVTGLVFSP-HSVPFLASLSEDCSLAVLDSSLS-ELFR--  294 (344)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC---CSSCEEEEEECS-SSSCCEEEEETTSCEEEECTTCC-EEEE--
T ss_pred             ecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC---CCCCEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCC-cEEE--
Confidence            9997788999999999999999999988888777   999999999999 65 68999999999999999875 4333  


Q ss_pred             eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      ..+|.+.|++++|+|+++.++++++.|+.+++|++...
T Consensus       295 ~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          295 SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            47899999999999998566667778999999998763

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.9e-40  Score=275.07  Aligned_cols=250  Identities=16%  Similarity=0.230  Sum_probs=211.7

Q ss_pred             eEeeecC-cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc---------ccCccEEEEEEcCCCCeEEEEecCCeE
Q 020107           61 LYRMDTA-GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK---------ISSSMCLCLEWNPSATSITVGLSDGSV  129 (331)
Q Consensus        61 ~~~~~~~-~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i  129 (331)
                      .+.+|.. .|++++|+|+    +++|++|+.|+.+ +|++.+..         .|...|.+++|+|++++|++|+.|+.|
T Consensus        10 ~~~~h~~~~v~~l~~sp~----g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPA----GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EECCSTTSCEEEEEECTT----SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eecCCCCCcEEEEEECCC----CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            3467877 8999999999    9999999999999 99987652         367899999999999999999999999


Q ss_pred             EEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107          130 SIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN  209 (331)
Q Consensus       130 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  209 (331)
                      ++|++..+....+..+.+|...|.+++|+| ++++|++++.|+.|++||++++.....+.....|...|.+++|+| ++.
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~  163 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQE  163 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSS
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCC
Confidence            999998876667788899999999999999 889999999999999999988754433333345999999999999 999


Q ss_pred             EEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-------------cc
Q 020107          210 TLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-------------AE  276 (331)
Q Consensus       210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~  276 (331)
                      +|++++.|+.|++||.+.........+..|...|++++|+|++ ..+++++.|+.+++|+.....             .+
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~  242 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK  242 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence            9999999999999999875322223357899999999999997 778888888999999974321             23


Q ss_pred             eeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          277 VLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       277 ~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .+.++.+ |...|++++|+|++         ..|++++ .|+.|++|+.+.+
T Consensus       243 ~~~~~~~~h~~~v~~v~~~~~~---------~~l~s~~-~d~~i~vw~~~~~  284 (345)
T 3fm0_A          243 CICTLSGFHSRTIYDIAWCQLT---------GALATAC-GDDAIRVFQEDPN  284 (345)
T ss_dssp             EEEEECSSCSSCEEEEEECTTT---------CCEEEEE-TTSCEEEEEECTT
T ss_pred             eeEEecCCCCCcEEEEEEecCC---------CEEEEEe-CCCeEEEEEeCCC
Confidence            3445555 88999999999998         6999999 9999999998654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=275.18  Aligned_cols=245  Identities=13%  Similarity=0.202  Sum_probs=211.9

Q ss_pred             EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107           62 YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSDGSVSIV  132 (331)
Q Consensus        62 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  132 (331)
                      ..+|.+.|++++|+|+...++.+|++|+.|+.+ +|++...+        .|...|.+++|++++..+++++.|+.|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW  107 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW  107 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            357999999999998632226799999999999 99987543        367899999999999999999999999999


Q ss_pred             EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107          133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL  212 (331)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  212 (331)
                      |+.+++.  +..+..+...+.+++|+| ++++|++++.|+.|++||+++++....+..   |...|.+++|+| ++++|+
T Consensus       108 d~~~~~~--~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~---~~~~v~~~~~sp-dg~~la  180 (321)
T 3ow8_A          108 DLENGKQ--IKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDT---RGKFILSIAYSP-DGKYLA  180 (321)
T ss_dssp             ETTTTEE--EEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEEC---SSSCEEEEEECT-TSSEEE
T ss_pred             ECCCCCE--EEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecC---CCceEEEEEECC-CCCEEE
Confidence            9998754  677888888999999999 889999999999999999999887766666   888999999999 999999


Q ss_pred             EEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeee
Q 020107          213 TGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGAD  292 (331)
Q Consensus       213 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  292 (331)
                      +|+.|+.|++||++++ +++.. +..|..+|.+++|+|++ .++++++.++.+++|++..  .+...++.+|...|++++
T Consensus       181 sg~~dg~i~iwd~~~~-~~~~~-~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~  255 (321)
T 3ow8_A          181 SGAIDGIINIFDIATG-KLLHT-LEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQH--ANLAGTLSGHASWVLNVA  255 (321)
T ss_dssp             EEETTSCEEEEETTTT-EEEEE-ECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTT--CCEEEEECCCSSCEEEEE
T ss_pred             EEcCCCeEEEEECCCC-cEEEE-EcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCC--cceeEEEcCCCCceEEEE
Confidence            9999999999999985 44443 57899999999999996 6777777888899999876  577888999999999999


Q ss_pred             ecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      |+|++         .+|++++ .|++|++||+.++.
T Consensus       256 ~sp~~---------~~l~s~s-~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          256 FCPDD---------THFVSSS-SDKSVKVWDVGTRT  281 (321)
T ss_dssp             ECTTS---------SEEEEEE-TTSCEEEEETTTTE
T ss_pred             ECCCC---------CEEEEEe-CCCcEEEEeCCCCE
Confidence            99998         6999999 99999999998764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-40  Score=291.52  Aligned_cols=305  Identities=13%  Similarity=0.146  Sum_probs=225.8

Q ss_pred             eeeecCcceeEeeecCCCC------CcEEEEEeecccC---------CCCCCCCCcEEEEeccCcccce--EEeEeeecC
Q 020107            5 HCELDGNADAVEFCPQDSY------HHVLAASTYTLQE---------GDKPSRNGSISLFNVNAEEKNL--ELLYRMDTA   67 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~~------~~~la~g~~~~~~---------~~~~~~~g~i~vw~~~~~~~~~--~~~~~~~~~   67 (331)
                      .+.+.+.+.+|+|+|..+.      +++||+|++....         -.+++.|++|+||++...+...  ......|.+
T Consensus       129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~  208 (524)
T 2j04_B          129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG  208 (524)
T ss_dssp             EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCC
T ss_pred             EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCC
Confidence            4456889999999998632      2799998854211         1234579999999998765222  123456778


Q ss_pred             cEeEEEEcCCC---CCCCCeEEEEcCCccE-EEecCCCc-----------------ccCccEEEEEEcCCCCeEEEEecC
Q 020107           68 GIFDIKWSPVG---GNAGPFLAQADADGGL-LRDITGEK-----------------ISSSMCLCLEWNPSATSITVGLSD  126 (331)
Q Consensus        68 ~v~~~~~~~~~---~~~~~~l~~~~~dg~i-iw~~~~~~-----------------~~~~~v~~~~~~~~~~~l~~~~~d  126 (331)
                      .|.+++|+|+.   +. +.+||+++.||++ +|++....                 .|...|.+++|+++ ..|++|+.|
T Consensus       209 ~V~~v~wsp~~~~~~~-~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~D  286 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHL-VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKN  286 (524)
T ss_dssp             SEEEEEECSSCCCSSS-SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETT
T ss_pred             cEEEEEECCCCCCCCC-CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCC
Confidence            89999999961   11 4699999999999 99997542                 24678999999986 489999999


Q ss_pred             CeEEEEEccccceeeeeeeecccceeEEE--eeCCCCC-cEEEEEcCCCeEEEEEccCCCceeeeecccCCC--cceEEE
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEFELWAT--SFDVHQP-HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK--MGVCCI  201 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~v~~~  201 (331)
                      |+|++||++++. .+...+.+|...|+++  +|+| ++ ++|++++.|++|++||+++++....+..   |.  ..|.++
T Consensus       287 gtV~lWD~~~~~-~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~---~~~~~~v~~v  361 (524)
T 2j04_B          287 GFVAEFDLTDPE-VPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVS---RFRGSNLVPV  361 (524)
T ss_dssp             SEEEEEETTBCS-SCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEE---ECSCCSCCCE
T ss_pred             CEEEEEECCCCC-CceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCccccccc---ccccCcccce
Confidence            999999998764 2355678899999999  5676 65 8999999999999999998876666554   44  358899


Q ss_pred             EEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc--------
Q 020107          202 ASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE--------  273 (331)
Q Consensus       202 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  273 (331)
                      +|+| ++..+++++.|++|++||+++.. .+.. +.+|.+.|++++|+|++ ..+++++.|+.+++|++...        
T Consensus       362 ~fsp-~~~~l~s~~~d~tv~lwd~~~~~-~~~~-l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~  437 (524)
T 2j04_B          362 VYCP-QIYSYIYSDGASSLRAVPSRAAF-AVHP-LVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNS  437 (524)
T ss_dssp             EEET-TTTEEEEECSSSEEEEEETTCTT-CCEE-EEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC---
T ss_pred             EeCC-CcCeEEEeCCCCcEEEEECcccc-ccee-eecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccC
Confidence            9999 88899999999999999999863 3333 47899999999999997 56777777777776642110        


Q ss_pred             ----------------------------------ccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107          274 ----------------------------------KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL  319 (331)
Q Consensus       274 ----------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i  319 (331)
                                                        ++..+.++.+|...|++++|+|++      +.+.++|+|+ .||.|
T Consensus       438 ~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~------~~~~~lAsg~-~~g~v  510 (524)
T 2j04_B          438 SATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS------AGGKCYAFSN-SAGLL  510 (524)
T ss_dssp             ---CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCST------TTTTEEEEEC-TTSEE
T ss_pred             ccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCC------CccHHHHhhc-cCceE
Confidence                                              022344566789999999999996      1125899999 99999


Q ss_pred             EEEcCCCc
Q 020107          320 RIWMPESD  327 (331)
Q Consensus       320 ~iW~~~~~  327 (331)
                      +||++.-.
T Consensus       511 rlw~l~~~  518 (524)
T 2j04_B          511 TLEYLSLE  518 (524)
T ss_dssp             EEEECSCC
T ss_pred             EEEEcccc
Confidence            99998643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.4e-39  Score=269.81  Aligned_cols=275  Identities=15%  Similarity=0.158  Sum_probs=232.2

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--eEEe-EeeecCcEeEEEEcCCCCCCCC
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--LELL-YRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      .+...+.+++|+|.+   ++|++++           +|.|++|++......  +... ...|...|.+++|+|+    ++
T Consensus        49 ~h~~~v~~~~~~~~~---~~l~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~  110 (337)
T 1gxr_A           49 NHGEVVCAVTISNPT---RHVYTGG-----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD----GC  110 (337)
T ss_dssp             CCSSCCCEEEECSSS---SEEEEEC-----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT----SS
T ss_pred             cCCCceEEEEEecCC---cEEEEcC-----------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC----CC
Confidence            356678888888876   8999986           999999999875421  2222 1268889999999999    89


Q ss_pred             eEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE
Q 020107           84 FLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA  154 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~  154 (331)
                      +|++++.||.+ +|++.+.+.        +...+.+++|+|+++.+++++.||.|++||+++++  .+..+..|...+.+
T Consensus       111 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~  188 (337)
T 1gxr_A          111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASC  188 (337)
T ss_dssp             EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEE
T ss_pred             EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc--eeeeeecccCceEE
Confidence            99999999999 999987652        56789999999999999999999999999999874  47778889999999


Q ss_pred             EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107          155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      ++|+| +++.+++++.|+.|++||+++++....+.    +...+.+++|+| ++.+|++++.|+.|++||+++. .... 
T Consensus       189 ~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~-~~~~-  260 (337)
T 1gxr_A          189 IDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKP-DKYQ-  260 (337)
T ss_dssp             EEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSS-CEEE-
T ss_pred             EEECC-CCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC-CeEE-
Confidence            99999 78999999999999999999887665554    688899999999 9999999999999999999985 3332 


Q ss_pred             eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107          235 TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       235 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  314 (331)
                       ...|...|.+++|+|++ ..+++++.++.+++|++...  +.+. ...|...|++++|+|++         ++|++++ 
T Consensus       261 -~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~--~~~~-~~~~~~~v~~~~~s~~~---------~~l~~~~-  325 (337)
T 1gxr_A          261 -LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYG--ASIF-QSKESSSVLSCDISVDD---------KYIVTGS-  325 (337)
T ss_dssp             -ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTC--CEEE-EEECSSCEEEEEECTTS---------CEEEEEE-
T ss_pred             -EcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCC--eEEE-EecCCCcEEEEEECCCC---------CEEEEec-
Confidence             47899999999999997 67777777888899998763  4443 34578899999999998         6999999 


Q ss_pred             CCCeEEEEcC
Q 020107          315 YDRLLRIWMP  324 (331)
Q Consensus       315 ~d~~i~iW~~  324 (331)
                      .||.|++|++
T Consensus       326 ~dg~i~iw~~  335 (337)
T 1gxr_A          326 GDKKATVYEV  335 (337)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=7.8e-40  Score=281.89  Aligned_cols=303  Identities=15%  Similarity=0.244  Sum_probs=244.7

Q ss_pred             eeeeecCcceeEeeecCCCC-------CcEEEEEeecccCCCCCCCCCcEEEEecc------------------------
Q 020107            4 AHCELDGNADAVEFCPQDSY-------HHVLAASTYTLQEGDKPSRNGSISLFNVN------------------------   52 (331)
Q Consensus         4 ~~~~~~~~~~~v~~~~~~~~-------~~~la~g~~~~~~~~~~~~~g~i~vw~~~------------------------   52 (331)
                      .++.++.|..++.|+|..+.       ..+|++|+|...      ..+.|.++++.                        
T Consensus        40 ~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~------~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~  113 (430)
T 2xyi_A           40 MTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD------EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFG  113 (430)
T ss_dssp             EEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSS------SCEEEEEEEEEEC----------------------
T ss_pred             hhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCC------CCCEEEEEEEECCCCcccccccccccccccccccc
Confidence            45678899999999998631       257999997533      36678888654                        


Q ss_pred             Ccccce-EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC----------c------ccCccEEEEEEc
Q 020107           53 AEEKNL-ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE----------K------ISSSMCLCLEWN  114 (331)
Q Consensus        53 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~----------~------~~~~~v~~~~~~  114 (331)
                      .....+ ......|.+.|++++|+|++   +.+|++++.+|.+ +|++...          .      .|...+.+++|+
T Consensus       114 ~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  190 (430)
T 2xyi_A          114 SVCGKIEIEIKINHEGEVNRARYMPQN---ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN  190 (430)
T ss_dssp             ----CEEEEEEEEESSCCSEEEEETTE---EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEEC
T ss_pred             CCCCceEEEEEEcCCCcEEEEEECCCC---CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeC
Confidence            000012 23346789999999999973   5699999999999 9999761          1      267789999999


Q ss_pred             CCCC-eEEEEecCCeEEEEEccccc-----eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC---ce
Q 020107          115 PSAT-SITVGLSDGSVSIVSVVESQ-----LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP---FK  185 (331)
Q Consensus       115 ~~~~-~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~  185 (331)
                      |+++ +|++|+.||.|++|++..+.     ..+...+..|...|.+++|+|.++.+|++++.|+.|++||++++.   ..
T Consensus       191 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~  270 (430)
T 2xyi_A          191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS  270 (430)
T ss_dssp             TTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCS
T ss_pred             CCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce
Confidence            9998 89999999999999998732     122456678999999999999778899999999999999999873   34


Q ss_pred             eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107          186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF  265 (331)
Q Consensus       186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  265 (331)
                      ..+..   |...|++++|+|....+|++|+.||.|++||+++...++.. +..|...|.+++|+|+++.++++++.++.+
T Consensus       271 ~~~~~---~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~-~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i  346 (430)
T 2xyi_A          271 HTVDA---HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS-FESHKDEIFQVQWSPHNETILASSGTDRRL  346 (430)
T ss_dssp             EEEEC---CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE-EECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred             eEeec---CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE-eecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence            44444   99999999999933347999999999999999986566655 567999999999999986678888889999


Q ss_pred             EEEEEcCcc------------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          266 AVVKVGGEK------------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       266 ~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ++|++....            .+.+..+.+|...|++++|+|+++        .+|++++ .||.|++|++.+..
T Consensus       347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--------~~l~s~s-~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP--------WIICSVS-EDNIMQVWQMAENV  412 (430)
T ss_dssp             EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST--------TEEEEEE-TTSEEEEEEECHHH
T ss_pred             EEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC--------CEEEEEE-CCCCEEEeEccccc
Confidence            999997632            267788889999999999999984        4899999 99999999997654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-39  Score=277.68  Aligned_cols=262  Identities=19%  Similarity=0.286  Sum_probs=219.9

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEc
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWN  114 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~  114 (331)
                      .+|.|++|++.++. ........|...|.+++|+|+    +++|++++.||.+ +|++.+.+.      |...|.+++| 
T Consensus       111 ~d~~v~lw~~~~~~-~~~~~~~~~~~~v~~v~~s~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-  184 (401)
T 4aez_A          111 LERNVYVWNADSGS-VSALAETDESTYVASVKWSHD----GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW-  184 (401)
T ss_dssp             ETTEEEEEETTTCC-EEEEEECCTTCCEEEEEECTT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-
T ss_pred             CCCeEEEeeCCCCc-EeEeeecCCCCCEEEEEECCC----CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE-
Confidence            49999999999876 344443447889999999999    8999999999999 999987653      6889999999 


Q ss_pred             CCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC
Q 020107          115 PSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH  194 (331)
Q Consensus       115 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  194 (331)
                       +++.|++++.||.|++||++... ..+..+.+|...|.+++|+| ++.+|++++.|+.|++||+++++....+..   |
T Consensus       185 -~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~  258 (401)
T 4aez_A          185 -NRHVLSSGSRSGAIHHHDVRIAN-HQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTN---H  258 (401)
T ss_dssp             -ETTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECC---C
T ss_pred             -CCCEEEEEcCCCCEEEEecccCc-ceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecC---C
Confidence             45799999999999999998543 34677888999999999999 889999999999999999998877666665   9


Q ss_pred             CcceEEEEEecCCCCEEEEEe--cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE--ecCcEEEEEE
Q 020107          195 KMGVCCIASIPSDSNTLLTGS--YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC--MHNGFAVVKV  270 (331)
Q Consensus       195 ~~~v~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~  270 (331)
                      ...|.+++|+|....++++++  .|+.|++||++++ +++..  ..+...|.+++|+|++ ..+++++  .++.+++|++
T Consensus       259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~  334 (401)
T 4aez_A          259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNT--VDAGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSY  334 (401)
T ss_dssp             SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEE--EECSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEE
T ss_pred             cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEE--EeCCCcEEEEEECCCC-CeEEEEeecCCCcEEEEec
Confidence            999999999995556777765  7999999999985 55555  5678899999999997 5555543  5888999999


Q ss_pred             cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ..........+.+|...|++++|+|++         .+|++++ .||.|++|++.++..
T Consensus       335 ~~~~~~~~~~~~~h~~~v~~~~~s~dg---------~~l~s~~-~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          335 SSSGLTKQVDIPAHDTRVLYSALSPDG---------RILSTAA-SDENLKFWRVYDGDH  383 (401)
T ss_dssp             ETTEEEEEEEEECCSSCCCEEEECTTS---------SEEEEEC-TTSEEEEEECCC---
T ss_pred             CCccceeEEEecCCCCCEEEEEECCCC---------CEEEEEe-CCCcEEEEECCCCcc
Confidence            875445556678999999999999998         6999999 999999999988754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.2e-39  Score=277.35  Aligned_cols=279  Identities=21%  Similarity=0.271  Sum_probs=229.3

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE--eeecCcEeEEEEcCCCCCCCCeEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY--RMDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      +.....|+|++.    ++||+|.           |++|+|||..+++  +...+  ..|...|++|+|+|+    +++|+
T Consensus       105 d~y~~~l~wS~~----n~lAvgl-----------d~tV~lWd~~tg~--~~~~~~~~~~~~~V~sv~fspd----g~~la  163 (420)
T 4gga_A          105 DYYLNLVDWSSG----NVLAVAL-----------DNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKE----GNYLA  163 (420)
T ss_dssp             CTTCBCEEECTT----SEEEEEE-----------TTEEEEEETTTCC--EEEEEECCSTTCCEEEEEECTT----SSEEE
T ss_pred             cccceeEEECCC----CEEEEEe-----------CCEEEEEECCCCC--EEEEEEecCCCCcEEEEEECCC----CCEEE
Confidence            445677899864    6999997           9999999999876  33333  356778999999999    99999


Q ss_pred             EEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107           87 QADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (331)
                      +|+.||.+ +|++.+.+.      |...+.+++++  +..|++|+.|+.+++||..... ..+..+.+|...+..+.|+|
T Consensus       164 sgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~-~~~~~~~~h~~~~~~~~~~~  240 (420)
T 4gga_A          164 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAP  240 (420)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECT
T ss_pred             EEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc-eeeEEecccccceeeeeecC
Confidence            99999999 999988654      67788888874  5799999999999999998754 45677889999999999998


Q ss_pred             CCCcEEEEEcCCCeEEEEEccCCCcee-eeecccCCCcceEEEEEecCCCCEEEEE--ecCCeEEEEEecCCCCCceeee
Q 020107          160 HQPHMVYTGSDDCKFSGWDIRESPFKL-AFQNSKIHKMGVCCIASIPSDSNTLLTG--SYDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~  236 (331)
                       ++.++++++.|+.+++||..+++... .+.....|...|.+++|+|.++.+++++  +.|++|++||++++ .+...  
T Consensus       241 -~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~--  316 (420)
T 4gga_A          241 -DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSA--  316 (420)
T ss_dssp             -TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEE--
T ss_pred             -CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-cccee--
Confidence             88999999999999999998775422 1222244899999999999777777764  47999999999985 44444  


Q ss_pred             eecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107          237 VCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY  315 (331)
Q Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~  315 (331)
                      ..+...+.++.|+|++..++++++ .++.+++|++..  ++++.++.+|.+.|++++|+|++         ++|+||| .
T Consensus       317 ~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~--~~~v~~l~gH~~~V~~l~~spdg---------~~l~S~s-~  384 (420)
T 4gga_A          317 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHTSRVLSLTMSPDG---------ATVASAA-A  384 (420)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCSSCEEEEEECTTS---------SCEEEEE-T
T ss_pred             eccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCC---------CEEEEEe-c
Confidence            566778999999999844444444 467899999876  68899999999999999999999         6999999 9


Q ss_pred             CCeEEEEcCCCc
Q 020107          316 DRLLRIWMPESD  327 (331)
Q Consensus       316 d~~i~iW~~~~~  327 (331)
                      |++|+|||+.+.
T Consensus       385 D~tvriWdv~~~  396 (420)
T 4gga_A          385 DETLRLWRCFEL  396 (420)
T ss_dssp             TTEEEEECCSCS
T ss_pred             CCeEEEEECCCC
Confidence            999999998653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-39  Score=266.06  Aligned_cols=249  Identities=16%  Similarity=0.240  Sum_probs=204.9

Q ss_pred             eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC--------cccCccEEEEEEcCC--CCeEEEEecCCeE
Q 020107           61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE--------KISSSMCLCLEWNPS--ATSITVGLSDGSV  129 (331)
Q Consensus        61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~--------~~~~~~v~~~~~~~~--~~~l~~~~~dg~i  129 (331)
                      ++.+|...|++++|+|+    +++|++|+.|+.+ +|++...        ..|...|.+++|+++  +++|++|+.|++|
T Consensus         4 ~~~~h~~~V~~~~~s~~----g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYY----GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             ECCSCSSCEEEEEECTT----SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             eccCCcCceEEEEECCC----CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            45789999999999999    9999999999999 9998643        237889999999864  8899999999999


Q ss_pred             EEEEccccceeeeeeeecccceeEEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC-
Q 020107          130 SIVSVVESQLEVLQQWKAHEFELWATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD-  207 (331)
Q Consensus       130 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  207 (331)
                      ++||+++++...+..+..|...|.+++|+|+. +.+|++++.|+.|++||++++........ .+|...|.+++|+| + 
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-~~h~~~v~~~~~~p-~~  157 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWAP-AT  157 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE-ECCSSCEEEEEECC-CC
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee-ecccCccceEeecC-Cc
Confidence            99999987655567778899999999999942 68999999999999999987643211111 34999999999999 4 


Q ss_pred             ------------CCEEEEEecCCeEEEEEecCCCCC--ceeeeeecCCceEEEEECCCC--CCeEEEEEecCcEEEEEEc
Q 020107          208 ------------SNTLLTGSYDEYLRVWDVRSISKP--VNETSVCLGGGVWRIKHHPFI--PGLVLAACMHNGFAVVKVG  271 (331)
Q Consensus       208 ------------~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  271 (331)
                                  +.+|++|+.|++|++||+++....  ....+..|...|.+++|+|++  ..++++++.|+.+++|++.
T Consensus       158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                        579999999999999999875432  222356899999999999985  3567777788899999997


Q ss_pred             Ccccce-eEEe--ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          272 GEKAEV-LETY--AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       272 ~~~~~~-~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      ...... ...+  ..|...|++++|+|++         ++||+++ .|+.|++|+..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------~~las~~-~D~~v~lw~~~  284 (297)
T 2pm7_B          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSG---------NVLALSG-GDNKVTLWKEN  284 (297)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSS---------CCEEEEE-TTSCEEEEEEC
T ss_pred             CCCCccceeeeecccCCCcEEEEEECCCC---------CEEEEEc-CCCcEEEEEEC
Confidence            643222 2233  4688899999999998         6999999 99999999976

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-41  Score=286.85  Aligned_cols=289  Identities=18%  Similarity=0.277  Sum_probs=235.2

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc--cceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE--KNLELLYRMDTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   84 (331)
                      .....+.+++|+|.+   .+||+|+          .||.|++|++....  ........+|...|++++|+|++   +.+
T Consensus        65 ~~~~~v~~~~~s~~~---~~l~~~~----------~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~  128 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNN---KIIAGAL----------DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ---DNV  128 (416)
T ss_dssp             CCSSCEEEEEECSSS---SCEEEEE----------SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS---TTB
T ss_pred             ecCCceEEEEECCCC---CeEEEEc----------cCCeEEEeecccccccccchhhccCCccceEEEEEcCCC---CCE
Confidence            355678899998876   8999998          79999999998721  12344457799999999999974   579


Q ss_pred             EEEEcCCccE-EEecCCCc---------------ccCccEEEEEEcCC-CCeEEEEecCCeEEEEEccccceeeeeeeec
Q 020107           85 LAQADADGGL-LRDITGEK---------------ISSSMCLCLEWNPS-ATSITVGLSDGSVSIVSVVESQLEVLQQWKA  147 (331)
Q Consensus        85 l~~~~~dg~i-iw~~~~~~---------------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  147 (331)
                      |++++.||.+ +|++.+.+               .|...|.+++|+|+ +..|++++.||.|++||+++++.  +..+..
T Consensus       129 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~  206 (416)
T 2pm9_A          129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE--VIHLSY  206 (416)
T ss_dssp             EEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE--EEEECC
T ss_pred             EEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc--ceEEec
Confidence            9999999999 99998765               25678999999999 78899999999999999998754  555555


Q ss_pred             c------cceeEEEeeCCCCCcEEEEEcCCC---eEEEEEccCC-CceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107          148 H------EFELWATSFDVHQPHMVYTGSDDC---KFSGWDIRES-PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD  217 (331)
Q Consensus       148 ~------~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  217 (331)
                      +      ...+.+++|+|.+..++++++.|+   .|++||++++ .....+.  .+|...|.+++|+|.++.+|++++.|
T Consensus       207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~d  284 (416)
T 2pm9_A          207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRD  284 (416)
T ss_dssp             CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESS
T ss_pred             cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCC
Confidence            4      788999999995567999999998   9999999986 3444444  13899999999999778999999999


Q ss_pred             CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE---------------E--
Q 020107          218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE---------------T--  280 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--  280 (331)
                      +.|++||+++. +++.. +..|...|.+++|+|+++.++++++.++.+++|++.........               .  
T Consensus       285 g~v~~wd~~~~-~~~~~-~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (416)
T 2pm9_A          285 NTVLLWNPESA-EQLSQ-FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNV  362 (416)
T ss_dssp             SEEEEECSSSC-CEEEE-EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC------------------
T ss_pred             CCEEEeeCCCC-cccee-ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccc
Confidence            99999999985 44444 57899999999999997667888888889999998764311110               0  


Q ss_pred             ----------------eecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          281 ----------------YAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       281 ----------------~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                                      ...|...+++++|+|++         ++|++++ .|+.|+||++.++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---------~~la~~~-~d~~v~~w~~~~~  415 (416)
T 2pm9_A          363 SREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG---------KLVQITP-DGKGVSITNPKIS  415 (416)
T ss_dssp             ----CCSCCCSSCCCCCSTTCCCSCCCEEETTT---------EEECBCT-TSSCBCCBCCCCC
T ss_pred             cccccccccccccccCCccccCCccceEEeeCC---------eEEEEeC-CCCeEEEEEeccC
Confidence                            01166788899999999         7999999 9999999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-39  Score=276.77  Aligned_cols=278  Identities=18%  Similarity=0.224  Sum_probs=219.5

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ...+.+++|+|.++  ++||+|+          .||.|++|++.+..........+|...|.+++|+|++   +.+|+++
T Consensus        73 ~~~v~~~~~~~~~~--~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~  137 (383)
T 3ei3_B           73 DRRVTSLEWHPTHP--TTVAVGS----------KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN---TNQLFVS  137 (383)
T ss_dssp             SSCEEEEEECSSCT--TEEEEEE----------BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE---EEEEEEE
T ss_pred             CCCEEEEEECCCCC--CEEEEEc----------CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC---CCEEEEE
Confidence            45677888887654  7999998          7999999999987622222223699999999999932   7899999


Q ss_pred             cCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107           89 DADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (331)
                      +.|+.+ +|++.+...        +...|.+++|+|++++|++++.||.|++||++ +  .++..+..|...|.+++|+|
T Consensus       138 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~--~~~~~~~~h~~~v~~~~~~~  214 (383)
T 3ei3_B          138 SIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G--HEIFKEKLHKAKVTHAEFNP  214 (383)
T ss_dssp             ETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S--CEEEEEECSSSCEEEEEECS
T ss_pred             eCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C--CEEEEeccCCCcEEEEEECC
Confidence            999999 999986433        34779999999999999999999999999995 3  34677888999999999999


Q ss_pred             CCCcEEEEEcCCCeEEEEEccCCC----ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107          160 HQPHMVYTGSDDCKFSGWDIRESP----FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  235 (331)
                      ....++++++.|+.|++||+++.+    ....+ .   |...|.+++|+|.++.+|++++.|+.|++||+++....... 
T Consensus       215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-  289 (383)
T 3ei3_B          215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI-  289 (383)
T ss_dssp             SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE-
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc-
Confidence            443399999999999999999843    33333 3   89999999999977889999999999999999986443332 


Q ss_pred             eeec-------C----------CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec--CCcceeeeeecCC
Q 020107          236 SVCL-------G----------GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK--HGSLAYGADWQRG  296 (331)
Q Consensus       236 ~~~~-------~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~  296 (331)
                       ..|       .          +.+..++|+|++ . + +++.++.+++|++..  ++.+..+.+  |...+..++|+|+
T Consensus       290 -~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~-~-s~s~d~~i~iwd~~~--~~~~~~l~~~~~~~~~~~~~~s~~  363 (383)
T 3ei3_B          290 -IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-Q-L-LLNDKRTIDIYDANS--GGLVHQLRDPNAAGIISLNKFSPT  363 (383)
T ss_dssp             -EECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-T-T-CTTCCCCEEEEETTT--CCEEEEECBTTBCSCCCEEEECTT
T ss_pred             -ccccccccccccceEEeccCCCCceEEEecCCc-c-c-ccCCCCeEEEEecCC--CceeeeecCCCCCceEEEEEEecC
Confidence             323       2          234445566654 2 2 555788899999876  577888876  4567777899999


Q ss_pred             CCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          297 RSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +         ++|++++  |+.|++||+++
T Consensus       364 g---------~~l~s~s--d~~i~iw~~~~  382 (383)
T 3ei3_B          364 G---------DVLASGM--GFNILIWNRED  382 (383)
T ss_dssp             S---------SEEEEEE--TTEEEEEECC-
T ss_pred             c---------cEEEEec--CCcEEEEecCC
Confidence            8         6899987  89999999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.5e-39  Score=286.36  Aligned_cols=272  Identities=19%  Similarity=0.342  Sum_probs=231.8

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ...+.+++|+|.+   ++|++++          .++.|++|+....   ......+|...|.+++|+|+    ++.|+++
T Consensus       262 ~~~v~~v~~~~d~---~~l~~~~----------~d~~i~~w~~~~~---~~~~~~~h~~~v~~~~~~~~----~~~l~t~  321 (577)
T 2ymu_A          262 SSSVNGVAFRPDG---QTIASAS----------DDKTVKLWNRNGQ---LLQTLTGHSSSVWGVAFSPD----GQTIASA  321 (577)
T ss_dssp             SSCEEEEEECTTS---SEEEEEE----------TTSCEEEEETTSC---EEEEECCCSSCEEEEEECTT----SSEEEEE
T ss_pred             CCCEEEEEEcCCC---CEEEEEe----------CCCEEEEEeCCCc---EEEEEecCCCCeEEEEECCC----CCEEEEE
Confidence            3456677777765   8999998          7999999997653   33445789999999999999    8999999


Q ss_pred             cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      +.|+.+ +|++.....     |...+.+++|+|+++.|++++.||.|++||.. +  +.+..+.+|...|.+++|+| ++
T Consensus       322 ~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~--~~~~~~~~~~~~v~~~~~s~-dg  397 (577)
T 2ymu_A          322 SDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G--QLLQTLTGHSSSVRGVAFSP-DG  397 (577)
T ss_dssp             ETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C--CEEEEEECCSSCEEEEEECT-TS
T ss_pred             eCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C--CEEEEecCCCCCeEEEEECC-CC
Confidence            999999 999876543     67889999999999999999999999999965 3  33677888999999999999 88


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG  242 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  242 (331)
                      ++|++++.|+.|++||.. ++....+..   |...|.+++|+| ++.+|++++.|+.|++||...  +.+. .+..|...
T Consensus       398 ~~l~~~~~d~~v~~~~~~-~~~~~~~~~---~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~--~~~~-~~~~~~~~  469 (577)
T 2ymu_A          398 QTIASASDDKTVKLWNRN-GQLLQTLTG---HSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNG--QLLQ-TLTGHSSS  469 (577)
T ss_dssp             SCEEEEETTSEEEEECTT-CCEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTS--CEEE-EEECCSSC
T ss_pred             CEEEEEeCCCEEEEEeCC-CCEEEEecC---CCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCC--CEEE-EEcCCCCC
Confidence            999999999999999964 555555555   999999999999 999999999999999999653  3333 35789999


Q ss_pred             eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107          243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW  322 (331)
                      |++++|+|++ .++++++.++.+++|+.   +++.+..+.+|...|++++|+|++         ++|++++ .|+.|++|
T Consensus       470 v~~~~~spd~-~~las~~~d~~i~iw~~---~~~~~~~~~~h~~~v~~l~~s~dg---------~~l~s~~-~dg~v~lw  535 (577)
T 2ymu_A          470 VRGVAFSPDG-QTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDG---------QTIASAS-DDKTVKLW  535 (577)
T ss_dssp             EEEEEECTTS-CEEEEEETTSEEEEEET---TSCEEEEEECCSSCEEEEEECTTS---------SCEEEEE-TTSEEEEE
T ss_pred             EEEEEEcCCC-CEEEEEeCCCEEEEEcC---CCCEEEEEeCCCCCEEEEEEcCCC---------CEEEEEE-CcCEEEEE
Confidence            9999999996 66777777777888873   368889999999999999999999         7999999 99999999


Q ss_pred             cCCC
Q 020107          323 MPES  326 (331)
Q Consensus       323 ~~~~  326 (331)
                      |...
T Consensus       536 d~~~  539 (577)
T 2ymu_A          536 NRNG  539 (577)
T ss_dssp             CTTS
T ss_pred             eCCC
Confidence            9754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-38  Score=268.56  Aligned_cols=293  Identities=12%  Similarity=0.050  Sum_probs=220.7

Q ss_pred             eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc----e----EEeEeeecCcEeEEEEc
Q 020107            4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN----L----ELLYRMDTAGIFDIKWS   75 (331)
Q Consensus         4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~----~----~~~~~~~~~~v~~~~~~   75 (331)
                      ..+.+..|+++++|+|++   .+||+|+.+..   ....++.|++|++......    +    ...+..|...|.+++++
T Consensus         9 ~~~~~g~PV~sv~fs~dg---~~l~sGGg~~~---~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~   82 (365)
T 4h5i_A            9 ASYNVGYPAYGAKFLNND---TLLVAGGGGEG---NNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS   82 (365)
T ss_dssp             EEEECSSCEEEEEEEETT---EEEEEEECCSS---SSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE
T ss_pred             eecCCCCCEEEEEEeCCC---cEEEEECCCcc---ccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC
Confidence            455667899999999987   89999872100   0012446999998765421    1    11234567778888876


Q ss_pred             CCCCCCCCeEEEEcC-----------CccE-EEecCCCcc---------------cCccEEEEEEcCCCCeEEEEe--cC
Q 020107           76 PVGGNAGPFLAQADA-----------DGGL-LRDITGEKI---------------SSSMCLCLEWNPSATSITVGL--SD  126 (331)
Q Consensus        76 ~~~~~~~~~l~~~~~-----------dg~i-iw~~~~~~~---------------~~~~v~~~~~~~~~~~l~~~~--~d  126 (331)
                      ++      .+++|..           |+.+ +|++.....               +...+.+++|+|||+++++++  .|
T Consensus        83 ~~------~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d  156 (365)
T 4h5i_A           83 KG------IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVP  156 (365)
T ss_dssp             TT------EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS
T ss_pred             CC------EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC
Confidence            55      7777654           4444 787655432               234578999999999987554  68


Q ss_pred             CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS  206 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  206 (331)
                      ++|++||+++++.  +..+. |...|.+++|+| +++++++++. +.+++|+..+++....... ..|...|.+++|+| 
T Consensus       157 ~~i~iwd~~~~~~--~~~~~-~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~fsp-  229 (365)
T 4h5i_A          157 AIMRIIDPSDLTE--KFEIE-TRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGSCIARKTD-FDKNWSLSKINFIA-  229 (365)
T ss_dssp             CEEEEEETTTTEE--EEEEE-CSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCCEEEEECC-CCTTEEEEEEEEEE-
T ss_pred             CEEEEeECCCCcE--EEEeC-CCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCcceeeeec-CCCCCCEEEEEEcC-
Confidence            9999999998754  55555 777899999999 8899999885 4567777777665443332 44889999999999 


Q ss_pred             CCCEEEEEecCC----eEEEEEecCCCCCc--eeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE
Q 020107          207 DSNTLLTGSYDE----YLRVWDVRSISKPV--NETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET  280 (331)
Q Consensus       207 ~~~~l~~~~~d~----~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (331)
                      ++.++++++.|+    .+++||+.......  ...+..|..+|++++|+|++ .++++++.|+.+++|++..  ++++.+
T Consensus       230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~--~~~~~~  306 (365)
T 4h5i_A          230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKD--LSMSKI  306 (365)
T ss_dssp             TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTT--TEEEEE
T ss_pred             CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCC--CcEEEE
Confidence            999999999887    68899988753222  12246788999999999997 6777777888899999876  577777


Q ss_pred             e-ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          281 Y-AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       281 ~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      + .+|...|++++|+|++         ++|||+| .|++|+||++..+.
T Consensus       307 ~~~gH~~~V~~v~fSpdg---------~~laS~S-~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          307 FKQAHSFAITEVTISPDS---------TYVASVS-AANTIHIIKLPLNY  345 (365)
T ss_dssp             ETTSSSSCEEEEEECTTS---------CEEEEEE-TTSEEEEEECCTTT
T ss_pred             ecCcccCCEEEEEECCCC---------CEEEEEe-CCCeEEEEEcCCCC
Confidence            5 6899999999999999         7999999 99999999997653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.8e-39  Score=273.52  Aligned_cols=289  Identities=14%  Similarity=0.239  Sum_probs=230.1

Q ss_pred             ecCcceeEeeecCCCCCc--EEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-----ecCcEeEEEEcCCCCC
Q 020107            8 LDGNADAVEFCPQDSYHH--VLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-----DTAGIFDIKWSPVGGN   80 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~--~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~   80 (331)
                      +.+++.+++|+|..+++.  ++++++           ++.|++|++.+.+ .+..+ ..     |...|++++|+|+...
T Consensus        17 h~~~v~~i~~~p~~~~~~~~~~~~~~-----------~~~v~vw~~~~~~-~~~~~-~~~~~~~~~~~v~~~~~~~~~~~   83 (366)
T 3k26_A           17 HNQPLFGVQFNWHSKEGDPLVFATVG-----------SNRVTLYECHSQG-EIRLL-QSYVDADADENFYTCAWTYDSNT   83 (366)
T ss_dssp             TCSCEEEEEECTTCCTTSCEEEEEEE-----------TTEEEEEEECGGG-CEEEE-EEEECSCTTCCEEEEEEEECTTT
T ss_pred             CCCceEEEEEecccCCCCceEEEECC-----------CCEEEEEEcCCCc-EEEee-eeccccCCCCcEEEEEeccCCCC
Confidence            456889999999633323  555555           8899999999765 33333 22     4567999999998432


Q ss_pred             CCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccceeeeeee---eccc
Q 020107           81 AGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQLEVLQQW---KAHE  149 (331)
Q Consensus        81 ~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~  149 (331)
                      .+.+|++|+.||.+ +|++.+.+.      |...|.+++|+| ++++|++++.||.|++||+++++.  +..+   ..|.
T Consensus        84 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~  161 (366)
T 3k26_A           84 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL--VAIFGGVEGHR  161 (366)
T ss_dssp             CCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE--EEEECSTTSCS
T ss_pred             CCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE--EEEeccccccc
Confidence            23589999999999 999987654      688999999999 899999999999999999998754  5555   6799


Q ss_pred             ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee-------------------------cccCCCcceEEEEEe
Q 020107          150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ-------------------------NSKIHKMGVCCIASI  204 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~~  204 (331)
                      ..|.+++|+| ++++|++++.||.|++||+++++....+.                         ....|...|.+++|+
T Consensus       162 ~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (366)
T 3k26_A          162 DEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL  240 (366)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred             CceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence            9999999999 88999999999999999999765432221                         122388999999998


Q ss_pred             cCCCCEEEEEecCCeEEEEEecCCCCC------------ceeeeeecCCceEEEEECCC--CCCeEEEEEecCcEEEEEE
Q 020107          205 PSDSNTLLTGSYDEYLRVWDVRSISKP------------VNETSVCLGGGVWRIKHHPF--IPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       205 ~~~~~~l~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~  270 (331)
                         +++|++++.|+.|++||+++....            ....+..|...|++++|+|+  + ..+++++.++.+++|++
T Consensus       241 ---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~  316 (366)
T 3k26_A          241 ---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDL  316 (366)
T ss_dssp             ---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEEC
T ss_pred             ---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEEC
Confidence               569999999999999999886431            12335678889999999998  6 77778888899999999


Q ss_pred             cCcc--cceeEEeecC--CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          271 GGEK--AEVLETYAKH--GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       271 ~~~~--~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ....  ......+.+|  ...|++++|+|++         ++|++++ .||.|++||+.+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~s~~-~dg~i~iwd~~~  366 (366)
T 3k26_A          317 EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS---------SILIAVC-DDASIWRWDRLR  366 (366)
T ss_dssp             CSSSGGGCEEEEECCTTCCSCEEEEEECTTS---------SEEEEEE-TTSEEEEEEC--
T ss_pred             CCCCCccccceEEcccccCCceEEEEeCCCC---------CeEEEEe-CCCEEEEEEecC
Confidence            8743  2255577777  7899999999998         6999999 999999999863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.6e-39  Score=275.84  Aligned_cols=293  Identities=11%  Similarity=0.111  Sum_probs=230.8

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc----cceEEeEeeecCcEeEEEEcCCCCCCC--
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE----KNLELLYRMDTAGIFDIKWSPVGGNAG--   82 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~--   82 (331)
                      .+.+.+++|+|     ++|++|+          .||.|++|++....    .........|...|.+++|+|+.+..+  
T Consensus        16 ~~~i~~~~~~~-----~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~   80 (397)
T 1sq9_A           16 DADIFSVSACN-----SFTVSCS----------GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE   80 (397)
T ss_dssp             SSCEEEEEECS-----SEEEEEE----------TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred             hcCeEEEEecC-----CeEEEEc----------CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcc
Confidence            45667777766     5888888          79999999998764    123444568999999999998710004  


Q ss_pred             -CeEEEEcCCccE-EEecCCCcc-----------c-----CccEEEEEEc----CCCCe-EEEEecCCeEEEEEccc---
Q 020107           83 -PFLAQADADGGL-LRDITGEKI-----------S-----SSMCLCLEWN----PSATS-ITVGLSDGSVSIVSVVE---  136 (331)
Q Consensus        83 -~~l~~~~~dg~i-iw~~~~~~~-----------~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~i~d~~~---  136 (331)
                       .+|++++.||.+ +|++.+.+.           +     ...|.+++|+    |+++. |++++.||.|++||+.+   
T Consensus        81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence             699999999999 999876652           3     4889999999    99999 99999999999999987   


Q ss_pred             ---cceeeee-----ee-------ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC---Ccce
Q 020107          137 ---SQLEVLQ-----QW-------KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH---KMGV  198 (331)
Q Consensus       137 ---~~~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~v  198 (331)
                         ++.  +.     .+       ..|...|.+++|+| ++ ++++++.|+.|++||+++++....+.....|   ...|
T Consensus       161 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          161 ESNSLT--LNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  236 (397)
T ss_dssp             HHHHTT--TCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             ccccce--eeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence               543  33     45       34788999999999 66 9999999999999999988766555532337   8899


Q ss_pred             EEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeee-------------cCCceEEEEECCCCCCeEEEEEec
Q 020107          199 CCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVC-------------LGGGVWRIKHHPFIPGLVLAACMH  262 (331)
Q Consensus       199 ~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~  262 (331)
                      .+++|+| ++.+|++++.|   +.|++||+++. +++.. +..             |...|.+++|+|++ ..+++++.+
T Consensus       237 ~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  312 (397)
T 1sq9_A          237 RSVKFSP-QGSLLAIAHDSNSFGCITLYETEFG-ERIGS-LSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWD  312 (397)
T ss_dssp             EEEEECS-STTEEEEEEEETTEEEEEEEETTTC-CEEEE-ECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETT
T ss_pred             ceEEECC-CCCEEEEEecCCCCceEEEEECCCC-cccce-eccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCC
Confidence            9999999 99999999999   99999999985 44444 355             89999999999997 677777788


Q ss_pred             CcEEEEEEcCcccceeEEee------cC---------------CcceeeeeecCCCCcc-cccccCcEEEEeecCCCeEE
Q 020107          263 NGFAVVKVGGEKAEVLETYA------KH---------------GSLAYGADWQRGRSSL-EGKRKNSLVATCSFYDRLLR  320 (331)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~------~h---------------~~~v~~~~~~~~~~~~-~~~~~~~~l~s~~~~d~~i~  320 (331)
                      +.+++|++..  ++.+..+.      +|               ...|++++|+|++... .+..++++|++++ .||.|+
T Consensus       313 g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~-~dg~i~  389 (397)
T 1sq9_A          313 GKLRFWDVKT--KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC-LDRSIR  389 (397)
T ss_dssp             SEEEEEETTT--TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE-TTTEEE
T ss_pred             CeEEEEEcCC--CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec-CCCcEE
Confidence            8899999877  57788888      77               9999999999996100 0000113899999 999999


Q ss_pred             EEcCCCc
Q 020107          321 IWMPESD  327 (331)
Q Consensus       321 iW~~~~~  327 (331)
                      +|+++++
T Consensus       390 iw~~~~g  396 (397)
T 1sq9_A          390 WFREAGG  396 (397)
T ss_dssp             EEEEEC-
T ss_pred             EEEcCCC
Confidence            9999876

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-39  Score=275.16  Aligned_cols=281  Identities=16%  Similarity=0.207  Sum_probs=230.5

Q ss_pred             ecCcceeEeeecCCCCCc-EEEEEeecccCCCCCCCCCcEEEEec----cCccc-----ceEEeEee----------ecC
Q 020107            8 LDGNADAVEFCPQDSYHH-VLAASTYTLQEGDKPSRNGSISLFNV----NAEEK-----NLELLYRM----------DTA   67 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~-~la~g~~~~~~~~~~~~~g~i~vw~~----~~~~~-----~~~~~~~~----------~~~   67 (331)
                      ..+.+.+++|+|.+   . +||+|+          .||.|++|++    .++..     ....+ ..          |..
T Consensus        44 ~~~~v~~~~~s~~~---~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  109 (425)
T 1r5m_A           44 KLDNIVSSTWNPLD---ESILAYGE----------KNSVARLARIVETDQEGKKYWKLTIIAEL-RHPFALSASSGKTTN  109 (425)
T ss_dssp             ECSCCSEEEECSSC---TTEEEEEE----------TBTEEEEEEEEEC------CEEEEEEEEE-ECCCCCC------CB
T ss_pred             ccCceEEEEECCCC---CcEEEEec----------CCceEEEEEEecccCCccccccccccccc-cccccccccccCCCC
Confidence            34688999999987   6 999998          7999999999    66541     11111 22          567


Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee-
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE-  140 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-  140 (331)
                      .|++++|+|+    +++|++++.||.+ +|+.....     .|...|.+++|+|++++|++++.||.|++||+.+++.. 
T Consensus       110 ~v~~~~~s~~----~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          110 QVTCLAWSHD----GNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             CEEEEEECTT----SSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             ceEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            8999999999    9999999999999 99954432     26789999999999999999999999999999764321 


Q ss_pred             -----------------------------------------------------eeeeeecccceeEEEeeCCCCCcEEEE
Q 020107          141 -----------------------------------------------------VLQQWKAHEFELWATSFDVHQPHMVYT  167 (331)
Q Consensus       141 -----------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~  167 (331)
                                                                           .+..+..|...|.+++|+| ++.+|++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  264 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLS  264 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEE
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEE
Confidence                                                                 1123446788899999998 7789999


Q ss_pred             EcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEE
Q 020107          168 GSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIK  247 (331)
Q Consensus       168 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  247 (331)
                      ++.|+.|++||+++++....+..   |...|.+++|+| ++ ++++++.|+.|++||+++. +++.. ...|...|.+++
T Consensus       265 ~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~-~~~~~-~~~~~~~i~~~~  337 (425)
T 1r5m_A          265 ASDDGTLRIWHGGNGNSQNCFYG---HSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQN-TLLAL-SIVDGVPIFAGR  337 (425)
T ss_dssp             EETTSCEEEECSSSBSCSEEECC---CSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTT-EEEEE-EECTTCCEEEEE
T ss_pred             EcCCCEEEEEECCCCccceEecC---CCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCC-cEeEe-cccCCccEEEEE
Confidence            99999999999999887777765   899999999999 77 9999999999999999885 43433 467899999999


Q ss_pred             ECCCCCCeEEEEEecCcEEEEEEcCcc------------------cceeEEeecCCc--ceeeeeecCCCCcccccccCc
Q 020107          248 HHPFIPGLVLAACMHNGFAVVKVGGEK------------------AEVLETYAKHGS--LAYGADWQRGRSSLEGKRKNS  307 (331)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~  307 (331)
                      |+|++ ..+++++.++.+++|++....                  .+.+..+.+|..  .|++++|+|++         +
T Consensus       338 ~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~  407 (425)
T 1r5m_A          338 ISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG---------N  407 (425)
T ss_dssp             ECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS---------S
T ss_pred             EcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC---------c
Confidence            99997 677777788899999987631                  117888889976  99999999999         6


Q ss_pred             EEEEeecCCCeEEEEcCC
Q 020107          308 LVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       308 ~l~s~~~~d~~i~iW~~~  325 (331)
                      +|++++ .||.|++|+++
T Consensus       408 ~l~~~~-~dg~i~iw~~~  424 (425)
T 1r5m_A          408 KISVAY-SLQEGSVVAIP  424 (425)
T ss_dssp             EEEEEE-SSSCCEEEECC
T ss_pred             eEEEEe-cCceEEEEeec
Confidence            999999 99999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.3e-39  Score=267.21  Aligned_cols=280  Identities=14%  Similarity=0.197  Sum_probs=235.9

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      ..+.+.+++|+|++   ++++++.          .++.+.+|........+  ....|...|++++|+|+    +++|++
T Consensus         8 ~~~~v~~~~~s~dg---~~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~----~~~l~~   68 (337)
T 1gxr_A            8 GSKPAYSFHVTADG---QMQPVPF----------PPDALIGPGIPRHARQI--NTLNHGEVVCAVTISNP----TRHVYT   68 (337)
T ss_dssp             EEEECCEEEECSSS---CEEECCC----------CTTSSSSTTCCSEEEEE--EEECCSSCCCEEEECSS----SSEEEE
T ss_pred             cCCceeEEEECCCC---CEEEeec----------CCCcEeccccCCccccc--eeccCCCceEEEEEecC----CcEEEE
Confidence            34578889998887   7888886          46666666555543222  23479999999999999    899999


Q ss_pred             EcCCccE-EEecCCCc-----------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           88 ADADGGL-LRDITGEK-----------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      ++ ||.+ +|++....           .+...|.+++|+|+++.|++++.||.|++||+++++......+..|...+.++
T Consensus        69 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~  147 (337)
T 1gxr_A           69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL  147 (337)
T ss_dssp             EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred             cC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEE
Confidence            99 9999 99997653           35678999999999999999999999999999987755677788899999999


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  235 (331)
                      +|+| +++++++++.|+.|++||+++++....+..   |...|.+++|+| ++++|++++.|+.|++||+++. +.+.. 
T Consensus       148 ~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-~~~~~-  220 (337)
T 1gxr_A          148 AISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREG-RQLQQ-  220 (337)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT-EEEEE-
T ss_pred             EECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeec---ccCceEEEEECC-CCCEEEEEecCCcEEEEECCCC-ceEee-
Confidence            9999 889999999999999999998876666665   899999999999 9999999999999999999985 44444 


Q ss_pred             eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107          236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY  315 (331)
Q Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~  315 (331)
                       ..+...+.+++|+|++ ..+++++.++.+++|++...  + ...+..|...|.+++|+|++         ++|++++ .
T Consensus       221 -~~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~~---------~~l~~~~-~  285 (337)
T 1gxr_A          221 -HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKP--D-KYQLHLHESCVLSLKFAYCG---------KWFVSTG-K  285 (337)
T ss_dssp             -EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSS--C-EEEECCCSSCEEEEEECTTS---------SEEEEEE-T
T ss_pred             -ecCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCC--C-eEEEcCCccceeEEEECCCC---------CEEEEec-C
Confidence             5788999999999997 67777778888999998764  2 34677899999999999998         6999999 9


Q ss_pred             CCeEEEEcCCCccc
Q 020107          316 DRLLRIWMPESDCL  329 (331)
Q Consensus       316 d~~i~iW~~~~~~~  329 (331)
                      ||.|++|++.++..
T Consensus       286 dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          286 DNLLNAWRTPYGAS  299 (337)
T ss_dssp             TSEEEEEETTTCCE
T ss_pred             CCcEEEEECCCCeE
Confidence            99999999987643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.8e-39  Score=266.69  Aligned_cols=246  Identities=19%  Similarity=0.236  Sum_probs=210.7

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      ....+.+|...|++++|+|+    +++|++|+.||.+ +|++.+.+.      |...|.+++|+|++++|++|+.|+.|+
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d----~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~  122 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTD----SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTT----SSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             hheeecCCCCceEEEEECCC----CCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence            34556889999999999999    9999999999999 999877643      678899999999999999999999999


Q ss_pred             EEEccccc--eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC
Q 020107          131 IVSVVESQ--LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS  208 (331)
Q Consensus       131 i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  208 (331)
                      +|++.+..  ......+.+|...|.++.|++ + ..+++++.|+.|++||+++++....+..   |...|.+++|+| ++
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l~s~s~d~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~~~-~~  196 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCALWDIETGQQTTTFTG---HTGDVMSLSLAP-DT  196 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEE-T-TEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECT-TS
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECC-C-CcEEEEECCCcEEEEECCCCcEEEEEcC---CCCceEEEEECC-CC
Confidence            99998643  234567788999999999987 4 3588999999999999999887766665   999999999999 99


Q ss_pred             CEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee--cCCc
Q 020107          209 NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA--KHGS  286 (331)
Q Consensus       209 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~  286 (331)
                      .+|++|+.|+.|++||+++. .+... +..|...|.+++|+|++ ..+++++.++.+++|++...  +.+..+.  .+..
T Consensus       197 ~~l~sg~~d~~v~~wd~~~~-~~~~~-~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~--~~~~~~~~~~~~~  271 (340)
T 1got_B          197 RLFVSGACDASAKLWDVREG-MCRQT-FTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRAD--QELMTYSHDNIIC  271 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTC-SEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTT--EEEEEECCTTCCS
T ss_pred             CEEEEEeCCCcEEEEECCCC-eeEEE-EcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCC--cEEEEEccCCccc
Confidence            99999999999999999985 43433 57899999999999997 77888888889999998874  4455554  3345


Q ss_pred             ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      .|++++|+|++         ++|++++ .|+.|++||+.++.
T Consensus       272 ~v~~~~~s~~g---------~~l~~g~-~d~~i~vwd~~~~~  303 (340)
T 1got_B          272 GITSVSFSKSG---------RLLLAGY-DDFNCNVWDALKAD  303 (340)
T ss_dssp             CEEEEEECTTS---------SEEEEEE-TTSEEEEEETTTCC
T ss_pred             ceEEEEECCCC---------CEEEEEC-CCCeEEEEEcccCc
Confidence            79999999999         6999999 99999999987654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.7e-39  Score=276.95  Aligned_cols=279  Identities=13%  Similarity=0.063  Sum_probs=227.4

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD   91 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   91 (331)
                      ...++|+|.+   ++|++|+          .||.|++|++.... .. .....| ..+....|+|+    +++|++++.|
T Consensus        59 ~~~~~~s~~g---~~l~~~~----------~d~~v~i~d~~~~~-~~-~~~~~~-~~~~~~~~~~~----~~~l~~~~~d  118 (420)
T 3vl1_A           59 GKGNTFEKVG---SHLYKAR----------LDGHDFLFNTIIRD-GS-KMLKRA-DYTAVDTAKLQ----MRRFILGTTE  118 (420)
T ss_dssp             CTTCEEEEEE---TTEEEEE----------ETTEEEEEECCSEE-TT-TTSCSC-CEEEEEEECSS----SCEEEEEETT
T ss_pred             ccceeeeecC---CeEEEEE----------cCCcEEEEEecccc-ee-eEEecC-CceEEEEEecC----CCEEEEEECC
Confidence            3478888876   7889988          69999999998765 22 222333 44555578888    8999999999


Q ss_pred             ccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE
Q 020107           92 GGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM  164 (331)
Q Consensus        92 g~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (331)
                      |.+ +|++.+.+.      |...|.+++|+|++++|++++.|+.|++||+++++.  +..+.+|...|.+++|+| ++.+
T Consensus       119 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~  195 (420)
T 3vl1_A          119 GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--PRTLIGHRATVTDIAIID-RGRN  195 (420)
T ss_dssp             SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC--CEEEECCSSCEEEEEEET-TTTE
T ss_pred             CCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC--ceEEcCCCCcEEEEEEcC-CCCE
Confidence            999 999887543      788999999999999999999999999999998754  677889999999999999 7899


Q ss_pred             EEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEE---------------------ecCCCCEEEEEecCCeEEEE
Q 020107          165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIAS---------------------IPSDSNTLLTGSYDEYLRVW  223 (331)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~---------------------~~~~~~~l~~~~~d~~i~iw  223 (331)
                      |++++.|+.|++||+++++....+.....|...|.++.+                     +| ++++|++++.||.|++|
T Consensus       196 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~  274 (420)
T 3vl1_A          196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVH  274 (420)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEE
T ss_pred             EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEE
Confidence            999999999999999998877777653345555666555                     67 78899999999999999


Q ss_pred             EecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-CCcceeeeeecCCCCcccc
Q 020107          224 DVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-HGSLAYGADWQRGRSSLEG  302 (331)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~  302 (331)
                      |+++. .........|...|.+++|+|++..++++++.++.+++|++... ...+..+.+ |...|..+.+. ++     
T Consensus       275 d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~-~~-----  346 (420)
T 3vl1_A          275 NVFSK-EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP-ECPVGEFLINEGTPINNVYFA-AG-----  346 (420)
T ss_dssp             ETTTC-CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-TSCSEEEEESTTSCEEEEEEE-TT-----
T ss_pred             ECCCC-ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC-cCchhhhhccCCCCceEEEeC-CC-----
Confidence            99986 44444345688999999999998448888888899999999875 344666666 67778888655 55     


Q ss_pred             cccCcEEEEeecCCCeEEEEcCCCc
Q 020107          303 KRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       303 ~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                          ++|++++ .|+.|++|++.+.
T Consensus       347 ----~~l~s~~-~d~~v~iw~~~~~  366 (420)
T 3vl1_A          347 ----ALFVSSG-FDTSIKLDIISDP  366 (420)
T ss_dssp             ----EEEEEET-TTEEEEEEEECCT
T ss_pred             ----CEEEEec-CCccEEEEeccCC
Confidence                6999999 9999999998763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.5e-38  Score=259.56  Aligned_cols=277  Identities=21%  Similarity=0.272  Sum_probs=224.5

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEe-EeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELL-YRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      ..+|+|++.    ++||+|.           |++|+|||+.+++ .+..+ ...|...|++++|+|+    +++|++|+.
T Consensus        28 ~~~l~WS~~----~~lAvg~-----------D~tV~iWd~~tg~-~~~~~~~~~~~~~V~~v~~~~~----~~~l~sgs~   87 (318)
T 4ggc_A           28 LNLVDWSSG----NVLAVAL-----------DNSVYLWSASSGD-ILQLLQMEQPGEYISSVAWIKE----GNYLAVGTS   87 (318)
T ss_dssp             CBCEEECTT----SEEEEEE-----------TTEEEEEETTTCC-EEEEEECCSTTCCEEEEEECTT----SSEEEEEET
T ss_pred             ceEEEECCC----CEEEEEe-----------CCEEEEEECCCCC-EEEEEEecCCCCeEEEEEECCC----CCEEEEEEC
Confidence            467999865    4899997           9999999999876 33332 2456778999999999    999999999


Q ss_pred             CccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCc
Q 020107           91 DGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH  163 (331)
Q Consensus        91 dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (331)
                      ||.+ +|++.+.+.      |...+.++.+  ++..+++++.++.+++|+..... ..+..+.+|...+..+.+.+ ++.
T Consensus        88 Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~  163 (318)
T 4ggc_A           88 SAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAP-DGR  163 (318)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECT-TSS
T ss_pred             CCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc-eeEEEEcCccCceEEEEEcC-CCC
Confidence            9999 999988764      4556665544  56799999999999999988754 45677888999999999998 789


Q ss_pred             EEEEEcCCCeEEEEEccCCCceee-eecccCCCcceEEEEEecCCCCEE--EEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107          164 MVYTGSDDCKFSGWDIRESPFKLA-FQNSKIHKMGVCCIASIPSDSNTL--LTGSYDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l--~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      ++++++.|+.|++||+++++.... ......+...|.++.++|..+..+  ++++.++.|++||.+.. .....  ..+.
T Consensus       164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~~~--~~~~  240 (318)
T 4ggc_A          164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSA--VDAH  240 (318)
T ss_dssp             EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEEEE--EECS
T ss_pred             EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-ccccc--ccce
Confidence            999999999999999998764322 122234788999999999555554  45678899999999875 33433  6788


Q ss_pred             CceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107          241 GGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL  319 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i  319 (331)
                      ..+..+.|+|.+..++++++ .++.+++|++..  ++++.++.+|.+.|++++|+|++         ++|+|+| .||+|
T Consensus       241 ~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~--~~~~~~l~gH~~~V~~l~~spdg---------~~l~S~s-~D~~v  308 (318)
T 4ggc_A          241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHTSRVLSLTMSPDG---------ATVASAA-ADETL  308 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCSSCEEEEEECTTS---------SCEEEEE-TTTEE
T ss_pred             eeeeeeeecccccceEEEEEcCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCC---------CEEEEEe-cCCeE
Confidence            89999999999844444444 567899999876  68899999999999999999998         6999999 99999


Q ss_pred             EEEcCCCc
Q 020107          320 RIWMPESD  327 (331)
Q Consensus       320 ~iW~~~~~  327 (331)
                      +|||+.+.
T Consensus       309 ~iWd~~~~  316 (318)
T 4ggc_A          309 RLWRCFEL  316 (318)
T ss_dssp             EEECCSCC
T ss_pred             EEEECCCC
Confidence            99999653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-38  Score=262.83  Aligned_cols=250  Identities=19%  Similarity=0.235  Sum_probs=197.9

Q ss_pred             EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc---------c-cCccEEEEEEcCCCCeEEEEecCC
Q 020107           59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK---------I-SSSMCLCLEWNPSATSITVGLSDG  127 (331)
Q Consensus        59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~---------~-~~~~v~~~~~~~~~~~l~~~~~dg  127 (331)
                      ...+.+|...|++++|+|+      +|++|+.|+.+ +|++....         . |...|.+++|+|++++|++|+.|+
T Consensus         7 ~~~~~~h~~~v~~~~~s~~------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceeeccCCCceeeeccCCC------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            3445789999999999988      99999999999 99987631         2 778899999999999999999999


Q ss_pred             eEEEEEcccc-----ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-CceeeeecccCCCcceEEE
Q 020107          128 SVSIVSVVES-----QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQNSKIHKMGVCCI  201 (331)
Q Consensus       128 ~i~i~d~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~  201 (331)
                      +|++||++..     ....+..+.+|...|.+++|+| ++++|++++.|+.|++||++.. .....+....+|...|.++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v  159 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV  159 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence            9999998642     2244667889999999999999 7899999999999999999543 2222222224499999999


Q ss_pred             EEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC-CeEEEEEecCcEEEEEEcCccc-----
Q 020107          202 ASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP-GLVLAACMHNGFAVVKVGGEKA-----  275 (331)
Q Consensus       202 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----  275 (331)
                      +|+| ++.+|++++.|++|++||.+.........+..|.+.|++++|+|+.. ..+++++.|+.+++|++.....     
T Consensus       160 ~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~  238 (330)
T 2hes_X          160 IWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE  238 (330)
T ss_dssp             EECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred             EECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence            9999 99999999999999999998642222233578999999999999853 4567777888999999865311     


Q ss_pred             -ceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          276 -EVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       276 -~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                       .....+.+ |...|++++|++++          +|++++ .||.|++|++.++
T Consensus       239 ~~~~~~~~~~h~~~v~~v~~s~~~----------~l~s~~-~dg~v~iw~~~~~  281 (330)
T 2hes_X          239 WVCEAILPDVHKRQVYNVAWGFNG----------LIASVG-ADGVLAVYEEVDG  281 (330)
T ss_dssp             EEEEEECCSCCSSCEEEEEECTTS----------CEEEEE-TTSCEEEEEEETT
T ss_pred             eEEeeecccccccceEEEEEcCCC----------EEEEEe-CCCEEEEEEcCCC
Confidence             33445554 89999999999764          899999 9999999998765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1e-39  Score=276.65  Aligned_cols=264  Identities=16%  Similarity=0.230  Sum_probs=219.1

Q ss_pred             cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCC
Q 020107           45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSA  117 (331)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~  117 (331)
                      .+..|+.....  ....+.+|.+.|++++|+|+    +++|++|+.||.+ +|++.+.+.      |...|.+++|+|++
T Consensus        47 ~~~~~~~~~~~--~~~~l~gH~~~V~~~~~sp~----~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g  120 (380)
T 3iz6_a           47 TAVSFNPTDLV--CCRTLQGHSGKVYSLDWTPE----KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG  120 (380)
T ss_dssp             GCCCCCCCCCE--EEEEECCCSSCEEEEEECTT----SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS
T ss_pred             cccccccceeE--EeecccccccEEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC
Confidence            34455554442  44556899999999999999    8999999999999 999987643      67789999999999


Q ss_pred             CeEEEEecCCeEEEEEcccc-----ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec--
Q 020107          118 TSITVGLSDGSVSIVSVVES-----QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN--  190 (331)
Q Consensus       118 ~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  190 (331)
                      ++|++|+.|+.+++|++.+.     .......+.+|...+.++.|.|.++..|++|+.|+.|++||+++++....+..  
T Consensus       121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~  200 (380)
T 3iz6_a          121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF  200 (380)
T ss_dssp             SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred             CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence            99999999999999998752     22234567889999999999996677899999999999999999887665522  


Q ss_pred             ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                      ..+|...|.++.|+|.++++|++|+.|++|++||++....++.. +.+|.+.|.+++|+|++ ..+++++.|+.+++|++
T Consensus       201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~-~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~  278 (380)
T 3iz6_a          201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT-YHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDM  278 (380)
T ss_dssp             SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE-ECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEET
T ss_pred             CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE-ECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEEC
Confidence            24589999999998868899999999999999999865455544 57899999999999997 67888888899999999


Q ss_pred             cCcccceeEEeecCC-------cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          271 GGEKAEVLETYAKHG-------SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       271 ~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ..  ++.+..+..+.       ..|++++|+|++         ++|++++ .||.|++||+.++.
T Consensus       279 ~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------~~l~~g~-~dg~i~vwd~~~~~  331 (380)
T 3iz6_a          279 RT--GHQLQVYNREPDRNDNELPIVTSVAFSISG---------RLLFAGY-SNGDCYVWDTLLAE  331 (380)
T ss_dssp             TT--TEEEEEECCCCSSSCCSSCSCSEEEECSSS---------SEEEEEC-TTSCEEEEETTTCC
T ss_pred             CC--CcEEEEecccccccccccCceEEEEECCCC---------CEEEEEE-CCCCEEEEECCCCc
Confidence            87  46666665432       348999999999         6999999 99999999987653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-37  Score=256.07  Aligned_cols=272  Identities=15%  Similarity=0.169  Sum_probs=227.1

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+.+.+++| |.+   ++|++|+          .||.|++||+.+..  .......|...|.+++|+|+    +++|+++
T Consensus        18 ~~~v~~~~~-~~~---~~l~s~~----------~dg~v~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~l~~~   77 (313)
T 3odt_A           18 DQDVRDVVA-VDD---SKVASVS----------RDGTVRLWSKDDQW--LGTVVYTGQGFLNSVCYDSE----KELLLFG   77 (313)
T ss_dssp             SSCEEEEEE-EET---TEEEEEE----------TTSEEEEEEESSSE--EEEEEEECSSCEEEEEEETT----TTEEEEE
T ss_pred             CCCcEEEEe-cCC---CEEEEEE----------cCCcEEEEECCCCE--EEEEeecCCccEEEEEECCC----CCEEEEe
Confidence            345667777 544   7899998          79999999997764  45555788999999999999    8999999


Q ss_pred             cCCccE-EEecCCCc---------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107           89 DADGGL-LRDITGEK---------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  158 (331)
                      +.||.+ +|++....         .|...|.+++|  +++.+++++.||.|++||  .+  .....+..|...+.+++|.
T Consensus        78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~--~~~~~~~~~~~~v~~~~~~  151 (313)
T 3odt_A           78 GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG--SLVYNLQAHNASVWDAKVV  151 (313)
T ss_dssp             ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT--EEEEEEECCSSCEEEEEEE
T ss_pred             cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC--cEEEecccCCCceeEEEEc
Confidence            999999 89876542         26788999999  578999999999999999  23  3467778899999999999


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC  238 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  238 (331)
                      |.+++.+++++.|+.|++||..  +....+.  ..|...+.+++|+| ++. +++++.|+.|++||+++. +++.. +..
T Consensus       152 ~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~--~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~-~~~~~-~~~  223 (313)
T 3odt_A          152 SFSENKFLTASADKTIKLWQND--KVIKTFS--GIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTG-DVLRT-YEG  223 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEETT--EEEEEEC--SSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTC-CEEEE-EEC
T ss_pred             cCCCCEEEEEECCCCEEEEecC--ceEEEEe--ccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCch-hhhhh-hhc
Confidence            8678999999999999999943  2233332  23889999999999 776 999999999999999985 44444 478


Q ss_pred             cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107          239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL  318 (331)
Q Consensus       239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~  318 (331)
                      |...|.+++|+|++  .+++++.++.+++|++..  ++.+..+..|...|++++|+|++         + +++++ .||.
T Consensus       224 ~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~---------~-~~~~~-~dg~  288 (313)
T 3odt_A          224 HESFVYCIKLLPNG--DIVSCGEDRTVRIWSKEN--GSLKQVITLPAISIWSVDCMSNG---------D-IIVGS-SDNL  288 (313)
T ss_dssp             CSSCEEEEEECTTS--CEEEEETTSEEEEECTTT--CCEEEEEECSSSCEEEEEECTTS---------C-EEEEE-TTSC
T ss_pred             CCceEEEEEEecCC--CEEEEecCCEEEEEECCC--CceeEEEeccCceEEEEEEccCC---------C-EEEEe-CCCc
Confidence            99999999999995  688888888889998876  57888899999999999999998         4 66788 8999


Q ss_pred             EEEEcCCCccc
Q 020107          319 LRIWMPESDCL  329 (331)
Q Consensus       319 i~iW~~~~~~~  329 (331)
                      |++|+++++.+
T Consensus       289 i~iw~~~~~~~  299 (313)
T 3odt_A          289 VRIFSQEKSRW  299 (313)
T ss_dssp             EEEEESCGGGC
T ss_pred             EEEEeCCCCce
Confidence            99999988754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.7e-38  Score=259.55  Aligned_cols=248  Identities=21%  Similarity=0.308  Sum_probs=212.9

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      +...+.+|...|++++|+|+    +++|++++.||.+ +|++...+.      |...|.+++|+|++++|++++.|+.|+
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEEEEcccCCcEEEEEECCC----CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            55566889999999999999    8999999999999 999876543      678899999999999999999999999


Q ss_pred             EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107          131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                      +||+++++.  +..+.+|...|.+++|+| +++++++++.|+.|++||+++++....+..   |...|.+++|+| ++.+
T Consensus        91 vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~  163 (312)
T 4ery_A           91 IWDVSSGKC--LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPA---HSDPVSAVHFNR-DGSL  163 (312)
T ss_dssp             EEETTTCCE--EEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECT-TSSE
T ss_pred             EEECCCCcE--EEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecC---CCCcEEEEEEcC-CCCE
Confidence            999998754  778889999999999999 789999999999999999999887777766   999999999999 9999


Q ss_pred             EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceee
Q 020107          211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG  290 (331)
Q Consensus       211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  290 (331)
                      |++++.|+.|++||+++. +.+......+..++..++|+|++ ..+++++.++.+++|++..  ++.+..+.+|...+..
T Consensus       164 l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~  239 (312)
T 4ery_A          164 IVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSK--GKCLKTYTGHKNEKYC  239 (312)
T ss_dssp             EEEEETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTT--TEEEEEECSSCCSSSC
T ss_pred             EEEEeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCC--CcEEEEEEecCCceEE
Confidence            999999999999999985 44554345667789999999997 6778888888899999876  5778888888765443


Q ss_pred             e--eecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          291 A--DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       291 ~--~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +  .+++.+.        .+|++++ .||.|++||+.++.+
T Consensus       240 ~~~~~~~~~~--------~~l~sg~-~dg~i~vwd~~~~~~  271 (312)
T 4ery_A          240 IFANFSVTGG--------KWIVSGS-EDNLVYIWNLQTKEI  271 (312)
T ss_dssp             CCEEEECSSS--------CEEEECC-TTSCEEEEETTTCCE
T ss_pred             EEEEEEeCCC--------cEEEEEC-CCCEEEEEECCCchh
Confidence            3  4443332        7999999 999999999987653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.9e-39  Score=268.19  Aligned_cols=253  Identities=13%  Similarity=0.169  Sum_probs=200.7

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------ccCccEEEEEEcC--CCCeEEEEecC
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------ISSSMCLCLEWNP--SATSITVGLSD  126 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~--~~~~l~~~~~d  126 (331)
                      +..+..+|...|++++|+|+    +++|++|+.|+.+ +|++.+..        .|...|.+++|++  ++++|++|+.|
T Consensus         5 ~~~~~~~H~~~V~~v~~s~~----g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D   80 (316)
T 3bg1_A            5 INTVDTSHEDMIHDAQMDYY----GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD   80 (316)
T ss_dssp             ---------CCEEEEEECGG----GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred             eeeecccccCeEEEeeEcCC----CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence            44566789999999999999    9999999999999 99987642        2788999999986  48899999999


Q ss_pred             CeEEEEEccccceeeeeeeecccceeEEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP  205 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  205 (331)
                      ++|++||+++++......+.+|...|.+++|+|+. +.+|++++.|+.|++||++.+...........|...|.+++|+|
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred             CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence            99999999987655567788899999999999942 68999999999999999987643222223345999999999999


Q ss_pred             CC-----------------CCEEEEEecCCeEEEEEecCCCC-CceeeeeecCCceEEEEECCCC---CCeEEEEEecCc
Q 020107          206 SD-----------------SNTLLTGSYDEYLRVWDVRSISK-PVNETSVCLGGGVWRIKHHPFI---PGLVLAACMHNG  264 (331)
Q Consensus       206 ~~-----------------~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~  264 (331)
                       +                 +.+|++|+.|++|++||++.... .....+..|...|.+++|+|++   ...+++++.|+.
T Consensus       161 -~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          161 -AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             -CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred             -ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence             5                 46899999999999999975321 1222356899999999999985   256777778888


Q ss_pred             EEEEEEcCcc--cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          265 FAVVKVGGEK--AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       265 ~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      +++|++....  ......+..|...|++++|+|++         ++||+++ .|++|++|+..
T Consensus       240 v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---------~~las~~-~D~~v~lw~~~  292 (316)
T 3bg1_A          240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA---------NILAVSG-GDNKVTLWKES  292 (316)
T ss_dssp             EEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT---------CCEEEEE-SSSCEEEEEEC
T ss_pred             EEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC---------CEEEEEc-CCCeEEEEEEC
Confidence            9999987621  11233456789999999999998         6999999 99999999975

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.2e-38  Score=270.39  Aligned_cols=274  Identities=11%  Similarity=0.117  Sum_probs=221.1

Q ss_pred             CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC
Q 020107           22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG  100 (331)
Q Consensus        22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~  100 (331)
                      +++++||+|+          .+|.|++||+....  .......|...|++++|+|+    +++|++++.|+.+ +|++.+
T Consensus       107 ~~~~~l~~~~----------~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~----~~~l~s~s~d~~i~iwd~~~  170 (420)
T 3vl1_A          107 LQMRRFILGT----------TEGDIKVLDSNFNL--QREIDQAHVSEITKLKFFPS----GEALISSSQDMQLKIWSVKD  170 (420)
T ss_dssp             SSSCEEEEEE----------TTSCEEEECTTSCE--EEEETTSSSSCEEEEEECTT----SSEEEEEETTSEEEEEETTT
T ss_pred             cCCCEEEEEE----------CCCCEEEEeCCCcc--eeeecccccCccEEEEECCC----CCEEEEEeCCCeEEEEeCCC
Confidence            3448999998          79999999998764  44455689999999999999    8999999999999 999987


Q ss_pred             Ccc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec---c---------------------cc
Q 020107          101 EKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA---H---------------------EF  150 (331)
Q Consensus       101 ~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~---------------------~~  150 (331)
                      .+.      |...|.+++|+|+++.|++++.||.|++||+++++.  +..+..   +                     ..
T Consensus       171 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence            653      688999999999999999999999999999998754  455543   2                     24


Q ss_pred             eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC-EEEEEecCCeEEEEEecCCC
Q 020107          151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN-TLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~  229 (331)
                      .+.+++|+| +++++++++.||.|++||+++++....+.  ..|...|.+++|+| ++. +|++++.||.|++||+++.+
T Consensus       249 ~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          249 KKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLP--SKFTCSCNSLTVDG-NNANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             CCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEEC--CTTSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTT
T ss_pred             cccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcc--cccCCCceeEEEeC-CCCCEEEEEeCCCeEEEEEcCCCc
Confidence            455566777 78899999999999999999887555443  34889999999999 776 99999999999999999876


Q ss_pred             CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc-------ceeEEeecCCcceeeeeecCCCCcccc
Q 020107          230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA-------EVLETYAKHGSLAYGADWQRGRSSLEG  302 (331)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~  302 (331)
                      .++......|...|.++.+.+.  ..+++++.++.+++|++.....       .....+.+|...|.+++|+|++.    
T Consensus       325 ~~~~~~~~~~~~~v~~~~~~~~--~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----  398 (420)
T 3vl1_A          325 CPVGEFLINEGTPINNVYFAAG--ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE----  398 (420)
T ss_dssp             SCSEEEEESTTSCEEEEEEETT--EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS----
T ss_pred             CchhhhhccCCCCceEEEeCCC--CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC----
Confidence            6666644447888999977643  6777777888899999976321       22334567889999999999982    


Q ss_pred             cccCcEEEEeecCCCeEEEEcCCC
Q 020107          303 KRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       303 ~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                       .+ ..++++| .+|.+.+|++++
T Consensus       399 -~~-g~l~a~g-~~g~~~~~~~~~  419 (420)
T 3vl1_A          399 -SN-GEVLEVG-KNNFCALYNLSN  419 (420)
T ss_dssp             -SS-CEEEEEE-TTTEEEEEESCC
T ss_pred             -Cc-ceEEEEc-CCceEEEEeccC
Confidence             11 1566666 699999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-37  Score=254.46  Aligned_cols=248  Identities=17%  Similarity=0.189  Sum_probs=197.4

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +...+.+++|+|.+   ++||+|+          .|+.|+||++..........+.+|...|++++|+|...  +++|++
T Consensus         8 h~~~V~~~~~s~~g---~~las~s----------~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~--g~~l~s   72 (297)
T 2pm7_B            8 HNEMIHDAVMDYYG---KRMATCS----------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF--GTILAS   72 (297)
T ss_dssp             CSSCEEEEEECTTS---SEEEEEE----------TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGG--CSEEEE
T ss_pred             CcCceEEEEECCCC---CEEEEEe----------CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCc--CCEEEE
Confidence            44567777887765   8999999          79999999997643234445588999999999986310  679999


Q ss_pred             EcCCccE-EEecCCCc--------ccCccEEEEEEcCC--CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107           88 ADADGGL-LRDITGEK--------ISSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  156 (331)
                      |+.|+++ +|++.+.+        .|...|.+++|+|+  +++|++++.|+.|++||++++.......+.+|...|.+++
T Consensus        73 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~  152 (297)
T 2pm7_B           73 CSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  152 (297)
T ss_dssp             EETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred             EcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence            9999999 99998753        26788999999997  8899999999999999998754222456778999999999


Q ss_pred             eCCCC------------CcEEEEEcCCCeEEEEEccCCCcee-eeecccCCCcceEEEEEecCC---CCEEEEEecCCeE
Q 020107          157 FDVHQ------------PHMVYTGSDDCKFSGWDIRESPFKL-AFQNSKIHKMGVCCIASIPSD---SNTLLTGSYDEYL  220 (331)
Q Consensus       157 ~~~~~------------~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i  220 (331)
                      |+|..            +.+|++|+.|+.|++||+++++... ......+|...|.+++|+| +   +.+|++++.|++|
T Consensus       153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp-~~~~~~~las~s~D~~v  231 (297)
T 2pm7_B          153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYMASVSQDRTC  231 (297)
T ss_dssp             ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEETTSCE
T ss_pred             ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC-CCCCceEEEEEECCCcE
Confidence            99842            4689999999999999999766321 1112244999999999999 6   4899999999999


Q ss_pred             EEEEecCCCCCce-eee--eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          221 RVWDVRSISKPVN-ETS--VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       221 ~iwd~~~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      ++||++....+.. ...  ..|...|++++|+|++ ..+++++.++.+++|+...
T Consensus       232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEECT
T ss_pred             EEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEECC
Confidence            9999987432222 112  3678899999999997 6777888888999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-38  Score=274.28  Aligned_cols=279  Identities=13%  Similarity=0.135  Sum_probs=218.7

Q ss_pred             cCcceeEeeec-CCCCCcEEEEEeecccCCCCCCCCCcEEEEeccC---cccceE-EeEeeecCcEeEEEEcCCCCCCCC
Q 020107            9 DGNADAVEFCP-QDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNA---EEKNLE-LLYRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         9 ~~~~~~v~~~~-~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~---~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      .+.+.+++|+| .+   ++||+|+          .||.|++||+..   .. ... .....|...|++++|+|+    +.
T Consensus        63 ~~~V~~~~~s~~~~---~~l~s~s----------~dg~v~vwd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~----~~  124 (437)
T 3gre_A           63 PNSITSSAVSPGET---PYLITGS----------DQGVIKIWNLKEIIVGE-VYSSSLTYDCSSTVTQITMIPN----FD  124 (437)
T ss_dssp             TSCEEEEEEECSSS---CEEEEEE----------TTSEEEEEEHHHHHTTC-CCSCSEEEECSSCEEEEEECTT----SS
T ss_pred             CCceEEEEECCCCC---CEEEEec----------CCceEEEeECcccccCc-ccceeeeccCCCCEEEEEEeCC----CC
Confidence            35688888888 55   8999998          799999999977   32 111 222258999999999998    89


Q ss_pred             eEEEEcCCccE-EEecC---CCcc------------------cCccEEEEE--EcCCCCeEEEEecCCeEEEEEccccce
Q 020107           84 FLAQADADGGL-LRDIT---GEKI------------------SSSMCLCLE--WNPSATSITVGLSDGSVSIVSVVESQL  139 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~---~~~~------------------~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~  139 (331)
                      +|++++.||.+ +|++.   .++.                  +...+.++.  ++++++.|++++.||.|++||+++++.
T Consensus       125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER  204 (437)
T ss_dssp             EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence            99999999999 99985   2211                  234455555  557899999999999999999998754


Q ss_pred             eeeeeeec--ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC---CCCEEEEE
Q 020107          140 EVLQQWKA--HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS---DSNTLLTG  214 (331)
Q Consensus       140 ~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~  214 (331)
                        +..+..  |...|++++|+| ++++|++++.||.|++||+++++....+..  .|...|.+++|+|.   ++.+|+++
T Consensus       205 --~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~~~l~s~  279 (437)
T 3gre_A          205 --LQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNSVIVVGG  279 (437)
T ss_dssp             --EEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTEEEEEEE
T ss_pred             --eEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCccEEEEE
Confidence              667776  889999999999 789999999999999999999876666652  27789999977652   57799999


Q ss_pred             ecCCeEEEEEecCCCCCceeee-----------------------e--ecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107          215 SYDEYLRVWDVRSISKPVNETS-----------------------V--CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK  269 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~~-----------------------~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (331)
                      +.|+.|++||+++++ .+..+.                       .  .|...|++++|+ ++ ..+++++.++.+++|+
T Consensus       280 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          280 SSKTFLTIWNFVKGH-CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFS  356 (437)
T ss_dssp             STTEEEEEEETTTTE-EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEE
T ss_pred             cCCCcEEEEEcCCCc-EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEE
Confidence            999999999998753 222211                       1  166779999999 43 6788888899999999


Q ss_pred             EcCcccceeEEeec-------------------------------------CCcceeeeeecCCCCcccccccCcEEEEe
Q 020107          270 VGGEKAEVLETYAK-------------------------------------HGSLAYGADWQRGRSSLEGKRKNSLVATC  312 (331)
Q Consensus       270 ~~~~~~~~~~~~~~-------------------------------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  312 (331)
                      +...  +....+.+                                     |...|++++|+++.+       +.+|+++
T Consensus       357 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~-------~~~l~s~  427 (437)
T 3gre_A          357 LNEL--SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE-------TPLLVAC  427 (437)
T ss_dssp             TTCG--GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS-------SEEEEEE
T ss_pred             CCCc--ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC-------ceEEEEE
Confidence            8763  33333333                                     899999999999821       1699999


Q ss_pred             ecCCCeEEEEc
Q 020107          313 SFYDRLLRIWM  323 (331)
Q Consensus       313 ~~~d~~i~iW~  323 (331)
                      + .||.|+||+
T Consensus       428 ~-~dG~I~iw~  437 (437)
T 3gre_A          428 D-NSGLIGIFQ  437 (437)
T ss_dssp             E-TTSCEEEEC
T ss_pred             c-CCceEEEeC
Confidence            9 999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-37  Score=261.63  Aligned_cols=248  Identities=18%  Similarity=0.236  Sum_probs=210.8

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      ....+.+|...|++++|+|+    +++|++|+.||.+ +|+..+.+.      +...|.+++|+|++..|++|+.|+.++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d----~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~  131 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKD----KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS  131 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTT----SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred             EEEEecCCCCeEEEEEECCC----CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence            34456899999999999999    8999999999999 999876543      567789999999999999999999999


Q ss_pred             EEEccccc----eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107          131 IVSVVESQ----LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS  206 (331)
Q Consensus       131 i~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  206 (331)
                      +|++....    ......+..|...|.+++|+| ++..|++++.|++|++||+++++....+..   |...|.+++++|.
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~  207 (354)
T 2pbi_B          132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHG---HGADVLCLDLAPS  207 (354)
T ss_dssp             EEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECCC
T ss_pred             EEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcC---CCCCeEEEEEEeC
Confidence            99986431    123456778999999999998 778999999999999999999988777776   9999999999883


Q ss_pred             -CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec--
Q 020107          207 -DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK--  283 (331)
Q Consensus       207 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  283 (331)
                       ++++|++|+.|+.|++||++++ +++.. +..|...|.+++|+|++ ..+++++.++.+++|++...  +.+..+..  
T Consensus       208 ~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~-~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~--~~~~~~~~~~  282 (354)
T 2pbi_B          208 ETGNTFVSGGCDKKAMVWDMRSG-QCVQA-FETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRAD--REVAIYSKES  282 (354)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTC-CEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTT--EEEEEECCTT
T ss_pred             CCCCEEEEEeCCCeEEEEECCCC-cEEEE-ecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCC--cEEEEEcCCC
Confidence             3589999999999999999985 44443 57899999999999997 77888888899999998874  44444543  


Q ss_pred             CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +...+.+++|+|++         ++|++++ .|+.|++||+.++.
T Consensus       283 ~~~~~~~~~~s~~g---------~~l~~g~-~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          283 IIFGASSVDFSLSG---------RLLFAGY-NDYTINVWDVLKGS  317 (354)
T ss_dssp             CCSCEEEEEECTTS---------SEEEEEE-TTSCEEEEETTTCS
T ss_pred             cccceeEEEEeCCC---------CEEEEEE-CCCcEEEEECCCCc
Confidence            34578999999998         6999999 99999999997764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.1e-37  Score=262.92  Aligned_cols=291  Identities=15%  Similarity=0.187  Sum_probs=227.2

Q ss_pred             ecCcceeEeeec-CCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-----------eeecCcEeEEEEc
Q 020107            8 LDGNADAVEFCP-QDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-----------RMDTAGIFDIKWS   75 (331)
Q Consensus         8 ~~~~~~~v~~~~-~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-----------~~~~~~v~~~~~~   75 (331)
                      +.+.+.+++|+| .+   ++||+|+          .||.|++|++...........           .+|...|.+++|+
T Consensus        42 h~~~v~~~~~s~~~~---~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  108 (408)
T 4a11_B           42 HGGGINTLDIEPVEG---RYMLSGG----------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY  108 (408)
T ss_dssp             CSSCEEEEEECTTTC---CEEEEEE----------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEEC
T ss_pred             cCCcEEEEEEecCCC---CEEEEEc----------CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEc
Confidence            456788888888 55   8999998          799999999987653221111           2488999999999


Q ss_pred             CCCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCC---CeEEEEecCCeEEEEEccccceeeeeeee
Q 020107           76 PVGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSA---TSITVGLSDGSVSIVSVVESQLEVLQQWK  146 (331)
Q Consensus        76 ~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  146 (331)
                      |++   +.+|++++.||.+ +|++.+.+.     +...+.++.|++.+   .++++++.+|.|++||+++++.  +..+.
T Consensus       109 ~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~  183 (408)
T 4a11_B          109 PHD---TGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC--SHILQ  183 (408)
T ss_dssp             TTC---TTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC--CEEEC
T ss_pred             cCC---CcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce--eeeec
Confidence            942   7799999999999 999988664     46778999999854   4899999999999999998754  67788


Q ss_pred             cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeee------------cccCCCcceEEEEEecCCCCEEEE
Q 020107          147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQ------------NSKIHKMGVCCIASIPSDSNTLLT  213 (331)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~------------~~~~~~~~v~~~~~~~~~~~~l~~  213 (331)
                      .|...|.+++|+|....++++++.||.|++||++++.. ...+.            ....|...|.+++|+| ++.+|++
T Consensus       184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  262 (408)
T 4a11_B          184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLT  262 (408)
T ss_dssp             CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEE
T ss_pred             CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEE
Confidence            89999999999995444799999999999999987652 22220            1134889999999999 9999999


Q ss_pred             EecCCeEEEEEecCCCCCceeeee--ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeee
Q 020107          214 GSYDEYLRVWDVRSISKPVNETSV--CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGA  291 (331)
Q Consensus       214 ~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  291 (331)
                      ++.|+.|++||+++.+........  ..........+.......+++++.++.+++|++..  ++.+..+.+|...|+++
T Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~v~~~  340 (408)
T 4a11_B          263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS--GEQITMLKGHYKTVDCC  340 (408)
T ss_dssp             EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT--CCEEEEECCCSSCEEEE
T ss_pred             ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcC--CcceeeeccCCCeEEEE
Confidence            999999999999986433222000  11111122233333336788888899999999877  68889999999999999


Q ss_pred             eecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +|+|++         ++|++++ .||.|++|+++++..
T Consensus       341 ~~s~~~---------~~l~s~~-~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          341 VFQSNF---------QELYSGS-RDCNILAWVPSLYEP  368 (408)
T ss_dssp             EEETTT---------TEEEEEE-TTSCEEEEEECC---
T ss_pred             EEcCCC---------CEEEEEC-CCCeEEEEeCCCCCc
Confidence            999998         6999999 999999999988653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.9e-37  Score=256.16  Aligned_cols=247  Identities=18%  Similarity=0.179  Sum_probs=195.8

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCC-CCCCCCeEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPV-GGNAGPFLA   86 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~   86 (331)
                      +.+.+.+++|+|.+   ++||+|+          .|+.|+|||+..........+.+|...|++++|+|. .   +.+|+
T Consensus        12 H~~~V~~v~~s~~g---~~lasgs----------~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~---~~~l~   75 (316)
T 3bg1_A           12 HEDMIHDAQMDYYG---TRLATCS----------SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMY---GNILA   75 (316)
T ss_dssp             --CCEEEEEECGGG---CEEEEEE----------TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGG---SSCEE
T ss_pred             ccCeEEEeeEcCCC---CEEEEEe----------CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCC---CCEEE
Confidence            34566777777655   8999999          799999999987642334456789999999999863 1   67999


Q ss_pred             EEcCCccE-EEecCCCc--------ccCccEEEEEEcCC--CCeEEEEecCCeEEEEEccccc-eeeeeeeecccceeEE
Q 020107           87 QADADGGL-LRDITGEK--------ISSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQ-LEVLQQWKAHEFELWA  154 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~  154 (331)
                      +|+.|+.+ +|++.+..        .|...|.+++|+|+  +.+|++|+.|+.|++||++.+. ......+.+|...+.+
T Consensus        76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~  155 (316)
T 3bg1_A           76 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA  155 (316)
T ss_dssp             EEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred             EEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence            99999999 99998753        26788999999998  7899999999999999998753 2334556789999999


Q ss_pred             EeeCCCC----------------CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC----CEEEEE
Q 020107          155 TSFDVHQ----------------PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS----NTLLTG  214 (331)
Q Consensus       155 ~~~~~~~----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~  214 (331)
                      ++|+|..                +.+|++++.|+.|++||++............+|...|.+++|+| ++    .+|+++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp-~~~~~~~~las~  234 (316)
T 3bg1_A          156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP-SIGLPTSTIASC  234 (316)
T ss_dssp             CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC-CSSCSCCEEEEE
T ss_pred             EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC-CCCCCCceEEEE
Confidence            9999842                36899999999999999976532222222345999999999999 64    789999


Q ss_pred             ecCCeEEEEEecCCC--CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          215 SYDEYLRVWDVRSIS--KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      +.|++|++||++...  ......+..|...|++++|+|++ ..+++++.|+.+++|+...
T Consensus       235 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEECT
T ss_pred             cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEECC
Confidence            999999999998631  11122246789999999999997 6788888899999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-36  Score=258.82  Aligned_cols=261  Identities=18%  Similarity=0.258  Sum_probs=210.6

Q ss_pred             CCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc--------------
Q 020107           43 NGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS--------------  104 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~--------------  104 (331)
                      +....+|+.......   +... ..|...|.+++|+|+    +++|++++ ++.+ +|++.+++..              
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~fspd----g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~  112 (393)
T 1erj_A           39 NDYYILYNPALPREIDVELHKS-LDHTSVVCCVKFSND----GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE  112 (393)
T ss_dssp             SSCEEEECTTSCCCEEEEEEEE-EECSSCCCEEEECTT----SSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred             CceEEEECCCCCcccCceeEEe-cCCCCEEEEEEECCC----CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccc
Confidence            334556765543211   1122 259999999999999    99999987 5666 9998765431              


Q ss_pred             ----------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107          105 ----------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKF  174 (331)
Q Consensus       105 ----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  174 (331)
                                ...|.+++|+|++++|++|+.|+.|++||+.+++.  +..+.+|...|.+++|+| ++.+|++++.|+.|
T Consensus       113 ~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v  189 (393)
T 1erj_A          113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTV  189 (393)
T ss_dssp             --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred             cccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--EEEEccCCCCEEEEEEcC-CCCEEEEecCCCcE
Confidence                      12489999999999999999999999999998754  777889999999999999 78899999999999


Q ss_pred             EEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee------eeecCCceEEEEE
Q 020107          175 SGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET------SVCLGGGVWRIKH  248 (331)
Q Consensus       175 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~  248 (331)
                      ++||+++++....+.    +...+.+++|+|.++.+|++|+.|+.|++||++++ ..+...      ...|...|++++|
T Consensus       190 ~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~  264 (393)
T 1erj_A          190 RIWDLRTGQCSLTLS----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVF  264 (393)
T ss_dssp             EEEETTTTEEEEEEE----CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEE
T ss_pred             EEEECCCCeeEEEEE----cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEE
Confidence            999999987665554    56789999999978899999999999999999875 333321      1468899999999


Q ss_pred             CCCCCCeEEEEEecCcEEEEEEcCcc----------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107          249 HPFIPGLVLAACMHNGFAVVKVGGEK----------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL  318 (331)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~  318 (331)
                      +|++ ..+++++.++.+++|++....          +.....+.+|...|.+++|+|++         .+|++++ .|+.
T Consensus       265 ~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------~~l~sgs-~D~~  333 (393)
T 1erj_A          265 TRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND---------EYILSGS-KDRG  333 (393)
T ss_dssp             CTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG---------CEEEEEE-TTSE
T ss_pred             CCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC---------CEEEEEe-CCCe
Confidence            9997 677788888899999986531          34566788999999999999998         6999999 9999


Q ss_pred             EEEEcCCCcc
Q 020107          319 LRIWMPESDC  328 (331)
Q Consensus       319 i~iW~~~~~~  328 (331)
                      |++||+.++.
T Consensus       334 v~iwd~~~~~  343 (393)
T 1erj_A          334 VLFWDKKSGN  343 (393)
T ss_dssp             EEEEETTTCC
T ss_pred             EEEEECCCCe
Confidence            9999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.3e-38  Score=268.87  Aligned_cols=262  Identities=14%  Similarity=0.207  Sum_probs=214.7

Q ss_pred             CCCcEEEEeccCcccc--eEEeEeeecCcEeEEEEcC-CCCCCCCeEEEEcCCccE-EEecCCCc-------------cc
Q 020107           42 RNGSISLFNVNAEEKN--LELLYRMDTAGIFDIKWSP-VGGNAGPFLAQADADGGL-LRDITGEK-------------IS  104 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~~~~~~-------------~~  104 (331)
                      .+|.|+||++......  ......+|...|++++|+| +    +.+|++|+.||.+ +|++.+..             .|
T Consensus        55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~----~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h  130 (402)
T 2aq5_A           55 GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHN----DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH  130 (402)
T ss_dssp             SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTC----TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC
T ss_pred             CCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCC----CCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC
Confidence            6999999999664321  2223468999999999999 6    8899999999999 99998762             16


Q ss_pred             CccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeee--ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107          105 SSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQW--KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE  181 (331)
Q Consensus       105 ~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  181 (331)
                      ...|.+++|+|++ +.|++++.||.|++||+++++.  +..+  ..|...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus       131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~  207 (402)
T 2aq5_A          131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRK  207 (402)
T ss_dssp             SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE--EEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTT
T ss_pred             CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc--cEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCC
Confidence            7899999999998 6899999999999999998754  6667  78999999999999 889999999999999999999


Q ss_pred             CCceeee-ecccCCCcc-eEEEEEecCCCCEEEEE---ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeE
Q 020107          182 SPFKLAF-QNSKIHKMG-VCCIASIPSDSNTLLTG---SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLV  256 (331)
Q Consensus       182 ~~~~~~~-~~~~~~~~~-v~~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  256 (331)
                      ++....+ ..   |... +.++.|+| ++.+|++|   +.|+.|++||+++...++......+...+.+++|+|++ ..+
T Consensus       208 ~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l  282 (402)
T 2aq5_A          208 GTVVAEKDRP---HEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDT-NIV  282 (402)
T ss_dssp             TEEEEEEECS---SCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTT-TEE
T ss_pred             CceeeeeccC---CCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCC-CEE
Confidence            8776666 33   6655 89999999 89999999   78999999999987665655445678899999999997 555


Q ss_pred             EEEE-ecCcEEEEEEcCcccceeEEeec--CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          257 LAAC-MHNGFAVVKVGGEKAEVLETYAK--HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       257 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ++++ .++.+++|++.... ..+..+..  |...|.+++|+|++         .++++   .++.+++|++.++.
T Consensus       283 ~~~g~~dg~i~i~d~~~~~-~~~~~l~~~~~~~~v~~~~~sp~~---------~~~~s---~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          283 YLCGKGDSSIRYFEITSEA-PFLHYLSMFSSKESQRGMGYMPKR---------GLEVN---KCEIARFYKLHERK  344 (402)
T ss_dssp             EEEETTCSCEEEEEECSST-TCEEEEEEECCSSCCSEEEECCGG---------GSCGG---GTEEEEEEEEETTE
T ss_pred             EEEEcCCCeEEEEEecCCC-cceEeecccccCCcccceEEeccc---------cccee---cceeEEEEEcCCCc
Confidence            5555 58889999998753 22333333  56899999999998         56654   46799999998753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.2e-37  Score=256.03  Aligned_cols=256  Identities=14%  Similarity=0.193  Sum_probs=213.3

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc----------ccCccEEEEEEcC--CCCeEEEEe
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK----------ISSSMCLCLEWNP--SATSITVGL  124 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~----------~~~~~v~~~~~~~--~~~~l~~~~  124 (331)
                      ++.+..+|...|++++|+|+    +++|++++.||.+ +|++.+..          .|...|.+++|+|  ++++|++++
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~   78 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFY----GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS   78 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSS----SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             ccccCcccccceeEEEEcCC----CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence            34566889999999999999    8999999999999 99998652          2688999999999  589999999


Q ss_pred             cCCeEEEEEccccce-------eeeeeeecccceeEEEeeCCCC--CcEEEEEcCCCeEEEEEccCCCceeeeec-----
Q 020107          125 SDGSVSIVSVVESQL-------EVLQQWKAHEFELWATSFDVHQ--PHMVYTGSDDCKFSGWDIRESPFKLAFQN-----  190 (331)
Q Consensus       125 ~dg~i~i~d~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----  190 (331)
                      .||.|++||+++++.       ..+..+..|...|.+++|+| +  +.++++++.||.|++||+++++....+..     
T Consensus        79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK  157 (351)
T ss_dssp             TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred             CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence            999999999987532       44677788999999999999 6  88999999999999999998876544331     


Q ss_pred             -----ccCCCcceEEEEEecC--CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC---CeEEEEE
Q 020107          191 -----SKIHKMGVCCIASIPS--DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP---GLVLAAC  260 (331)
Q Consensus       191 -----~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~  260 (331)
                           ...|...+.+++|+|.  ++.++++++.|+.+.+|+...........+..|...|++++|+|++.   .++++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence                 1247889999999993  28999999999999888777643222333567999999999999963   3677777


Q ss_pred             ecCcEEEEEEcCc--------------------------------------------ccceeEEeecCCcceeeeeecCC
Q 020107          261 MHNGFAVVKVGGE--------------------------------------------KAEVLETYAKHGSLAYGADWQRG  296 (331)
Q Consensus       261 ~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~h~~~v~~~~~~~~  296 (331)
                      .++.+++|++...                                            ..+.+..+.+|...|++++|+|+
T Consensus       238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  317 (351)
T 3f3f_A          238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT  317 (351)
T ss_dssp             TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred             CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence            7888999999763                                            13667778899999999999999


Q ss_pred             CCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          297 RSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +         ++|++++ .||.|++|+++++.
T Consensus       318 ~---------~~l~s~~-~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          318 G---------TILSSAG-DDGKVRLWKATYSN  339 (351)
T ss_dssp             S---------CCEEEEE-TTSCEEEEEECTTS
T ss_pred             C---------CEEEEec-CCCcEEEEecCcCc
Confidence            8         6999999 99999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8e-37  Score=252.82  Aligned_cols=243  Identities=14%  Similarity=0.217  Sum_probs=204.4

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC-----------cccCccEEEEEEcCCCCeEEEEec
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE-----------KISSSMCLCLEWNPSATSITVGLS  125 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~~  125 (331)
                      +...+.+|.+.|++++|+|++   +.+|++|+.|+.+ +|++...           +.|...|.+++|+|++++|++|+.
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~---~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQ---PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSC---TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEccccceEEEEEccCCC---ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            444568999999999999973   4799999999999 9987642           237889999999999999999999


Q ss_pred             CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107          126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP  205 (331)
Q Consensus       126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  205 (331)
                      |++|++||+++++.  +..+.+|...|.+++|+| ++.++++++.|+.|++||++. .+...+..   |...|.++.+.|
T Consensus        86 D~~v~~wd~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~---h~~~v~~~~~~~  158 (319)
T 3frx_A           86 DKTLRLWDVATGET--YQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKG-QCLATLLG---HNDWVSQVRVVP  158 (319)
T ss_dssp             TSEEEEEETTTTEE--EEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTS-CEEEEECC---CSSCEEEEEECC
T ss_pred             CCEEEEEECCCCCe--eEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEec---cCCcEEEEEEcc
Confidence            99999999998854  778899999999999998 889999999999999999974 34555544   999999999998


Q ss_pred             C-----CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE
Q 020107          206 S-----DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET  280 (331)
Q Consensus       206 ~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (331)
                      .     ++..|++++.|+.|++||+++. +.... +..|...|.+++|+|++ .++++++.++.+++|++..  .+.+..
T Consensus       159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~-~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~--~~~~~~  233 (319)
T 3frx_A          159 NEKADDDSVTIISAGNDKMVKAWNLNQF-QIEAD-FIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAA--KKAMYT  233 (319)
T ss_dssp             C------CCEEEEEETTSCEEEEETTTT-EEEEE-ECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTT--TEEEEE
T ss_pred             CCCCCCCccEEEEEeCCCEEEEEECCcc-hhhee-ecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC--CcEEEE
Confidence            3     2348999999999999999875 33332 57899999999999997 6777778888899999877  466777


Q ss_pred             eecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          281 YAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       281 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      +.. ...|.+++|+|++         .+|++++  +..+++|+++..
T Consensus       234 ~~~-~~~v~~~~~sp~~---------~~la~~~--~~~i~v~~~~~~  268 (319)
T 3frx_A          234 LSA-QDEVFSLAFSPNR---------YWLAAAT--ATGIKVFSLDPQ  268 (319)
T ss_dssp             EEC-CSCEEEEEECSSS---------SEEEEEE--TTEEEEEEETTE
T ss_pred             ecC-CCcEEEEEEcCCC---------CEEEEEc--CCCcEEEEeCcC
Confidence            765 4689999999998         5888776  667999998764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8.1e-37  Score=264.43  Aligned_cols=278  Identities=15%  Similarity=0.206  Sum_probs=216.8

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc---------ceEEeEeeec------------
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK---------NLELLYRMDT------------   66 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~---------~~~~~~~~~~------------   66 (331)
                      ..+.+.+++|+|.+   ++||+|+          .||.|+||++.....         .+...+.+|.            
T Consensus        27 ~~~~V~~v~~s~~g---~~la~g~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~   93 (447)
T 3dw8_B           27 EADIISTVEFNHSG---ELLATGD----------KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIE   93 (447)
T ss_dssp             GGGSEEEEEECSSS---SEEEEEE----------TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEEC
T ss_pred             ccCcEEEEEECCCC---CEEEEEc----------CCCeEEEEEecCCCCCCcccccceeEeccccccccccccccccccc
Confidence            35688899998866   8999998          799999999987541         1344557787            


Q ss_pred             CcEeEEEEcCCCCCCC--CeEEEEcCCccE-EEecCC-------------------------------------------
Q 020107           67 AGIFDIKWSPVGGNAG--PFLAQADADGGL-LRDITG-------------------------------------------  100 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~--~~l~~~~~dg~i-iw~~~~-------------------------------------------  100 (331)
                      ..|++++|+|+    +  ..|++++.|+.+ +|++..                                           
T Consensus        94 ~~V~~l~~~~~----~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (447)
T 3dw8_B           94 EKINKIRWLPQ----KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPR  169 (447)
T ss_dssp             CCCCEEEECCC----CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEE
T ss_pred             CceEEEEEcCC----CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccce
Confidence            88999999999    6  799999999999 999865                                           


Q ss_pred             ---CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeee-------eeecccceeEEEeeCCCCCcEEEEEcC
Q 020107          101 ---EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ-------QWKAHEFELWATSFDVHQPHMVYTGSD  170 (331)
Q Consensus       101 ---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~  170 (331)
                         ...|...|.+++|+|++++|++| .|+.|++||++.... .+.       .+.+|...|++++|+|+++++|++++.
T Consensus       170 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  247 (447)
T 3dw8_B          170 RIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS  247 (447)
T ss_dssp             EEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred             EEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence               23478889999999999999998 799999999985321 222       356789999999999943489999999


Q ss_pred             CCeEEEEEccCCCc----eeeeecccCCCc------------ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107          171 DCKFSGWDIRESPF----KLAFQNSKIHKM------------GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       171 dg~i~i~d~~~~~~----~~~~~~~~~~~~------------~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      ||.|++||+++++.    ...+..   |..            .|.+++|+| ++.+|++++. +.|++||++...+++..
T Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~  322 (447)
T 3dw8_B          248 KGTIRLCDMRASALCDRHSKLFEE---PEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVET  322 (447)
T ss_dssp             TSCEEEEETTTCSSSCTTCEEECC---C-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred             CCeEEEEECcCCccccceeeEecc---CCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccce
Confidence            99999999998875    455554   665            899999999 9999999998 99999999974455554


Q ss_pred             eeeecCCc---------------eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-----------------
Q 020107          235 TSVCLGGG---------------VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-----------------  282 (331)
Q Consensus       235 ~~~~~~~~---------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  282 (331)
                       +..|...               +..++|+|++ ..+++++.++.+++|++...  +.+ .+.                 
T Consensus       323 -~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~--~~~-~~~~~~~~~~~~~~~~~~~~  397 (447)
T 3dw8_B          323 -YQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTK--RDI-TLEASRENNKPRTVLKPRKV  397 (447)
T ss_dssp             -EESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTC--CEE-EEECCSTTCCTTCBCCCCCE
T ss_pred             -eeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCC--cce-eeeecccccccccccCCccc
Confidence             3455431               3349999997 66777778888999998763  222 222                 


Q ss_pred             ----------------cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          283 ----------------KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       283 ----------------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                                      .+...|..++|+|++         .+||+++ .+ .+++|.-.
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~---------~~la~~~-~~-~~~~~~~~  445 (447)
T 3dw8_B          398 CASGKRKKDEISVDSLDFNKKILHTAWHPKE---------NIIAVAT-TN-NLYIFQDK  445 (447)
T ss_dssp             ECSSCCCTTCEEGGGCCTTSCCCEEEECSSS---------SEEEEEC-SS-CEEEEECC
T ss_pred             cccCCcccccccccccccCCceeEEEECCCC---------CEEEEEe-cc-eeeeeccc
Confidence                            234578899999998         6899887 44 58888643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.7e-36  Score=250.81  Aligned_cols=245  Identities=12%  Similarity=0.134  Sum_probs=199.5

Q ss_pred             eEEeEeeecCcEeEEEE-----cC-CCCCCCCeEEEEcCCccE-EEecCCCc-------------ccCccEEEEEEcCCC
Q 020107           58 LELLYRMDTAGIFDIKW-----SP-VGGNAGPFLAQADADGGL-LRDITGEK-------------ISSSMCLCLEWNPSA  117 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~-----~~-~~~~~~~~l~~~~~dg~i-iw~~~~~~-------------~~~~~v~~~~~~~~~  117 (331)
                      ....+.+|...|++++|     ++ +    +++|++|+.|+.+ +|++...+             .|...|.+++|+|++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d----~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENED----SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCC----CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred             eeeeeccchhhhhheeeEEEeecCCC----CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence            34456889999999999     66 5    8899999999999 99986432             367889999999999


Q ss_pred             CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcc
Q 020107          118 TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMG  197 (331)
Q Consensus       118 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  197 (331)
                      .++++|+.|++|++||+++++.  +..+.+|...|.+++|+| ++++|++++.|+.|++||++... .........|...
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~  164 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGTT--YKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDW  164 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSCE--EEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSC
T ss_pred             CEEEEEcCCCcEEEEECCCCcE--EEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCce
Confidence            9999999999999999998754  778889999999999999 78999999999999999998432 3333322458999


Q ss_pred             eEEEEEecCCC----------CEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEE
Q 020107          198 VCCIASIPSDS----------NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAV  267 (331)
Q Consensus       198 v~~~~~~~~~~----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  267 (331)
                      |.+++|+| ++          .+|++++.|+.|++||.+.  ... ..+..|...|.+++|+|++ .++++++.++.+++
T Consensus       165 v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~-~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~i  239 (343)
T 2xzm_R          165 VSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIR-YTFKAHESNVNHLSISPNG-KYIATGGKDKKLLI  239 (343)
T ss_dssp             EEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEE-EEEECCSSCEEEEEECTTS-SEEEEEETTCEEEE
T ss_pred             eeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCC--cee-EEEcCccccceEEEECCCC-CEEEEEcCCCeEEE
Confidence            99999999 54          7899999999999999432  222 3357899999999999997 67778888888999


Q ss_pred             EEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          268 VKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       268 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      |++... ......+. +...|.+++|+|++         .++++ + .|+.|++|++.++.
T Consensus       240 wd~~~~-~~~~~~~~-~~~~v~~v~~sp~~---------~~la~-~-~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          240 WDILNL-TYPQREFD-AGSTINQIAFNPKL---------QWVAV-G-TDQGVKIFNLMTQS  287 (343)
T ss_dssp             EESSCC-SSCSEEEE-CSSCEEEEEECSSS---------CEEEE-E-ESSCEEEEESSSCC
T ss_pred             EECCCC-cccceeec-CCCcEEEEEECCCC---------CEEEE-E-CCCCEEEEEeCCCC
Confidence            998543 23334443 45679999999997         56654 5 58999999997653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=256.87  Aligned_cols=253  Identities=17%  Similarity=0.244  Sum_probs=211.1

Q ss_pred             EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC--------cccCccEEEEEEcCC--CCeEEEEecCC
Q 020107           59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE--------KISSSMCLCLEWNPS--ATSITVGLSDG  127 (331)
Q Consensus        59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~--------~~~~~~v~~~~~~~~--~~~l~~~~~dg  127 (331)
                      ...+.+|...|++++|+|+    +++|++++.||.+ +|++...        ..|...|.+++|+++  +++|++++.||
T Consensus         4 ~~~~~~h~~~v~~~~~s~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYY----GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             -CCEEECCCCEEEEEECSS----SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             cEEecCCcccEEEEEEcCC----CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            3456899999999999999    8999999999999 9999732        236889999999987  89999999999


Q ss_pred             eEEEEEccccceeeeeeeecccceeEEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107          128 SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS  206 (331)
Q Consensus       128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  206 (331)
                      .|++||+.+++...+..+..|...|.+++|+|.. +.++++++.|+.|++||+++......... ..|...|.+++|+|.
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWAPA  158 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE-ECCTTCEEEEEECCC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe-cCCCCceEEEEEcCc
Confidence            9999999988765678888899999999999932 78999999999999999998754443333 348999999999994


Q ss_pred             ------------CCCEEEEEecCCeEEEEEecCCCCC--ceeeeeecCCceEEEEECCCC--CCeEEEEEecCcEEEEEE
Q 020107          207 ------------DSNTLLTGSYDEYLRVWDVRSISKP--VNETSVCLGGGVWRIKHHPFI--PGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       207 ------------~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~  270 (331)
                                  ++.+|++++.|+.|++||++.....  ....+..|...|.+++|+|++  ...+++++.++.+++|++
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence                        4899999999999999999975432  222346789999999999993  378888888999999999


Q ss_pred             cCcccceeEE-e--ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          271 GGEKAEVLET-Y--AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       271 ~~~~~~~~~~-~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      .......... +  ..|...|++++|+|++         ++|++++ .||.|++|++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------~~l~~~~-~dg~i~iw~~~~  287 (379)
T 3jrp_A          239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSG---------NVLALSG-GDNKVTLWKENL  287 (379)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSS---------CCEEEEE-SSSSEEEEEEEE
T ss_pred             CCCCccceeeeeccccCCCcEEEEEEcCCC---------CEEEEec-CCCcEEEEeCCC
Confidence            8753222222 2  2488899999999999         6999999 899999999873

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.8e-36  Score=292.66  Aligned_cols=284  Identities=13%  Similarity=0.159  Sum_probs=236.5

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+.+.+++|+|.+   ++||+|+          .||.|++||+.+..  ......+|...|.+++|+|+    +++|+++
T Consensus       615 ~~~v~~~~~s~~~---~~l~s~~----------~d~~i~vw~~~~~~--~~~~~~~h~~~v~~~~~s~~----~~~l~s~  675 (1249)
T 3sfz_A          615 TDAVYHACFSQDG---QRIASCG----------ADKTLQVFKAETGE--KLLDIKAHEDEVLCCAFSSD----DSYIATC  675 (1249)
T ss_dssp             SSCEEEEEECTTS---SEEEEEE----------TTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTT----SSEEEEE
T ss_pred             cccEEEEEECCCC---CEEEEEe----------CCCeEEEEECCCCC--EEEEeccCCCCEEEEEEecC----CCEEEEE
Confidence            3456677777765   8999998          79999999999876  33344789999999999999    9999999


Q ss_pred             cCCccE-EEecCCCcc------cCccEEEEEEcC--CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107           89 DADGGL-LRDITGEKI------SSSMCLCLEWNP--SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (331)
                      +.||.+ +|++.+++.      |...|.+++|+|  ++..+++|+.||.|++||+.+++.  +..+.+|...|++++|+|
T Consensus       676 ~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~sp  753 (1249)
T 3sfz_A          676 SADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFGHTNSVNHCRFSP  753 (1249)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE--EEEECCCSSCEEEEEECS
T ss_pred             eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch--hheecCCCCCEEEEEEec
Confidence            999999 999988654      688999999999  455799999999999999998754  777889999999999999


Q ss_pred             CCCcEEEEEcCCCeEEEEEccCCCceeeeec-------------------------------------------------
Q 020107          160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQN-------------------------------------------------  190 (331)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------------------------------------  190 (331)
                       ++.++++++.||.|++||+++++....+..                                                 
T Consensus       754 -~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~  832 (1249)
T 3sfz_A          754 -DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL  832 (1249)
T ss_dssp             -STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred             -CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence             889999999999999999987643322210                                                 


Q ss_pred             ---ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEE
Q 020107          191 ---SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAV  267 (331)
Q Consensus       191 ---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  267 (331)
                         ..+|...|.+++|+| ++.++++++.|+.|++||+.+. ..+.. ...|...|.+++|+|++ ..+++++.++.+++
T Consensus       833 ~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~-~~~~~-~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~v  908 (1249)
T 3sfz_A          833 AEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSR-LKVAD-CRGHLSWVHGVMFSPDG-SSFLTASDDQTIRV  908 (1249)
T ss_dssp             EEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTT-EEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred             eEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC-ceeee-cCCCccceEEEEECCCC-CEEEEEeCCCeEEE
Confidence               114788899999999 9999999999999999999985 33333 57899999999999987 67888888888899


Q ss_pred             EEEcCc--------------------------------------------------------------------------
Q 020107          268 VKVGGE--------------------------------------------------------------------------  273 (331)
Q Consensus       268 ~~~~~~--------------------------------------------------------------------------  273 (331)
                      |++...                                                                          
T Consensus       909 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~  988 (1249)
T 3sfz_A          909 WETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII  988 (1249)
T ss_dssp             EEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEE
T ss_pred             EEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEE
Confidence            885310                                                                          


Q ss_pred             ---ccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          274 ---KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       274 ---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                         .++....+.+|...|++++|+|++         ++|++++ .||.|++|++.++.
T Consensus       989 d~~~~~~~~~~~~h~~~v~~l~~s~dg---------~~l~s~~-~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A          989 ELPNNRVFSSGVGHKKAVRHIQFTADG---------KTLISSS-EDSVIQVWNWQTGD 1036 (1249)
T ss_dssp             ETTTTSCEEECCCCSSCCCCEEECSSS---------SCEEEEC-SSSBEEEEETTTTE
T ss_pred             EcCCCceeeecccCCCceEEEEECCCC---------CEEEEEc-CCCEEEEEECCCCc
Confidence               133445566789999999999998         6999999 99999999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.6e-36  Score=278.25  Aligned_cols=284  Identities=13%  Similarity=0.176  Sum_probs=238.5

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      ..+.+.+++|+|.+   .+||+|+          .+|.|++||+.++.  .......|...|.+++|+|+    +++|++
T Consensus        12 h~~~v~~i~~sp~~---~~la~~~----------~~g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~----~~~l~~   72 (814)
T 3mkq_A           12 RSDRVKGIDFHPTE---PWVLTTL----------YSGRVEIWNYETQV--EVRSIQVTETPVRAGKFIAR----KNWIIV   72 (814)
T ss_dssp             ECSCEEEEEECSSS---SEEEEEE----------TTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGG----GTEEEE
T ss_pred             CCCceEEEEECCCC---CEEEEEe----------CCCEEEEEECCCCc--eEEEEecCCCcEEEEEEeCC----CCEEEE
Confidence            34567788888766   8999998          79999999998875  44445789999999999999    899999


Q ss_pred             EcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      ++.||.+ +|++.+++.      |...|.+++|+|+++.|++++.||.|++||+.++. .....+.+|...|.+++|+|.
T Consensus        73 ~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~p~  151 (814)
T 3mkq_A           73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPK  151 (814)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-EEEEEEECCSSCEEEEEEETT
T ss_pred             EeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-eEEEEEcCCCCcEEEEEEEcC
Confidence            9999999 999987654      67899999999999999999999999999998763 346677889999999999986


Q ss_pred             CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC-CCCEEEEEecCCeEEEEEecCCCCCceeeeeec
Q 020107          161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS-DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL  239 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  239 (331)
                      ++..+++++.||.|++||++++.....+..  .+...+.+++|+|. ++.+|++++.|+.|++||+++. .++.. +..|
T Consensus       152 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~-~~~~  227 (814)
T 3mkq_A          152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVAT-LEGH  227 (814)
T ss_dssp             EEEEEEEEETTSEEEEEETTCSSCSEEEEC--CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEE-EECC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeEEec--CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEE-EcCC
Confidence            678999999999999999998776665554  24588999999973 5779999999999999999885 44443 4679


Q ss_pred             CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107          240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL  319 (331)
Q Consensus       240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i  319 (331)
                      ...|.+++|+|++ ..+++++.++.+++|++..  ++.+..+..|...+.+++|+|++.        ..+++++ .|+.+
T Consensus       228 ~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~-~~~~~  295 (814)
T 3mkq_A          228 MSNVSFAVFHPTL-PIIISGSEDGTLKIWNSST--YKVEKTLNVGLERSWCIATHPTGR--------KNYIASG-FDNGF  295 (814)
T ss_dssp             SSCEEEEEECSSS-SEEEEEETTSCEEEEETTT--CSEEEEECCSSSSEEEEEECTTCG--------GGEEEEE-ETTEE
T ss_pred             CCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCC--CcEEEEeecCCCcEEEEEEccCCC--------ceEEEEE-eCCCE
Confidence            9999999999997 5777777788899998876  578888999999999999999984        4434444 48889


Q ss_pred             EEEcCCCc
Q 020107          320 RIWMPESD  327 (331)
Q Consensus       320 ~iW~~~~~  327 (331)
                      .+|++..+
T Consensus       296 ~~~~~~~~  303 (814)
T 3mkq_A          296 TVLSLGND  303 (814)
T ss_dssp             EEEECSCC
T ss_pred             EEEEcCCC
Confidence            99987654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.9e-36  Score=251.73  Aligned_cols=282  Identities=15%  Similarity=0.197  Sum_probs=225.3

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +.+.+.+++|+|...++++|++|+          .||.|++|++......+.....+|...|++++|+|+    +++|++
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s  103 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGS----------WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD----GSKVFT  103 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEE----------TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT----SSEEEE
T ss_pred             CCCceEEEEEcCCCCCceEEEEEC----------CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC----CCEEEE
Confidence            456788999998864458999998          799999999997443554666889999999999999    899999


Q ss_pred             EcCCccE-EEecCCCcc-----cCccEEEEEE--cCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107           88 ADADGGL-LRDITGEKI-----SSSMCLCLEW--NPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~-----~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (331)
                      ++.||.+ +|++.+.+.     |...|.+++|  +|++++|++++.||.|++||+++++.  +..+..+. .+.++.+.+
T Consensus       104 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~-~~~~~~~~~  180 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP--MMVLQLPE-RCYCADVIY  180 (368)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC--SEEEECSS-CEEEEEEET
T ss_pred             EcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE--EEEEecCC-CceEEEecC
Confidence            9999999 999988764     6889999999  89999999999999999999998754  56666554 566777664


Q ss_pred             CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE----EEEEecCCeEEEEEecCCCC-Ccee
Q 020107          160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT----LLTGSYDEYLRVWDVRSISK-PVNE  234 (331)
Q Consensus       160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~~~d~~i~iwd~~~~~~-~~~~  234 (331)
                         ..+++++.++.+++||++.......... ..+...+.++.+.+ +...    +++++.|+.|++||++.... ....
T Consensus       181 ---~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  255 (368)
T 3mmy_A          181 ---PMAVVATAERGLIVYQLENQPSEFRRIE-SPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF  255 (368)
T ss_dssp             ---TEEEEEEGGGCEEEEECSSSCEEEEECC-CSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred             ---CeeEEEeCCCcEEEEEeccccchhhhcc-ccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence               5788888899999999987654332222 23455667777766 4443    99999999999999987532 1122


Q ss_pred             eeeecCC------------ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccc
Q 020107          235 TSVCLGG------------GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEG  302 (331)
Q Consensus       235 ~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  302 (331)
                      .+..|..            .|++++|+|++ ..+++++.++.+++|++..  ++.+..+.+|...|++++|+|++     
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~g-----  327 (368)
T 3mmy_A          256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDA--RTKLKTSEQLDQPISACCFNHNG-----  327 (368)
T ss_dssp             EEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTT--TEEEEECCCCSSCEEEEEECTTS-----
T ss_pred             eeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCC--CcEEEEecCCCCCceEEEECCCC-----
Confidence            2345544            79999999997 6788888899999999886  58888999999999999999999     


Q ss_pred             cccCcEEEEeecCCCeEEEEcC
Q 020107          303 KRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       303 ~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                          ++|++++ .|+..+.|++
T Consensus       328 ----~~l~~~s-~d~~~~~~~~  344 (368)
T 3mmy_A          328 ----NIFAYAS-SYDWSKGHEF  344 (368)
T ss_dssp             ----SCEEEEE-CCCSTTCGGG
T ss_pred             ----CeEEEEe-cccccccccc
Confidence                6999999 7876555554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.6e-36  Score=259.35  Aligned_cols=262  Identities=15%  Similarity=0.213  Sum_probs=220.7

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI  103 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~  103 (331)
                      ++|++|+          .||.|++||+.+.+  ....+.+|...|.+++|+|+    + .|++|+.||.+ +|++.+.+.
T Consensus       133 ~~l~sgs----------~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~----~-~l~s~s~dg~i~vwd~~~~~~  195 (464)
T 3v7d_B          133 NYVITGA----------DDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAHG----G-ILVSGSTDRTVRVWDIKKGCC  195 (464)
T ss_dssp             TEEEEEE----------TTSCEEEEETTTTE--EEEEECCCSSCEEEEEECST----T-EEEEEETTSCEEEEETTTTEE
T ss_pred             CEEEEEc----------CCCcEEEEECCCCc--EEEEEeCCCcCEEEEEEcCC----C-EEEEEeCCCCEEEEECCCCcE
Confidence            7999998          79999999998876  44445789999999999998    6 99999999999 999987653


Q ss_pred             ------cCccEEEEEEc--CCCCeEEEEecCCeEEEEEcccccee---------------------eeeeeecccceeEE
Q 020107          104 ------SSSMCLCLEWN--PSATSITVGLSDGSVSIVSVVESQLE---------------------VLQQWKAHEFELWA  154 (331)
Q Consensus       104 ------~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~---------------------~~~~~~~~~~~v~~  154 (331)
                            |...|.+++|+  ++++++++|+.||.|++||+.++...                     .+..+.+|...+.+
T Consensus       196 ~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  275 (464)
T 3v7d_B          196 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT  275 (464)
T ss_dssp             EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE
T ss_pred             EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE
Confidence                  68899999998  57789999999999999999875422                     14456778888888


Q ss_pred             EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107          155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      +.  + +++++++++.|+.|++||+++++....+..   |...|.+++|+| ++.++++|+.|+.|++||++++ +++..
T Consensus       276 ~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~-~~~~~  347 (464)
T 3v7d_B          276 VS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENG-ELMYT  347 (464)
T ss_dssp             EE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTT-EEEEE
T ss_pred             Ec--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-cEEEE
Confidence            75  3 568999999999999999999887777765   999999999999 9999999999999999999985 44444


Q ss_pred             eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107          235 TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       235 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  314 (331)
                       +..|...|.+++|++   ..+++++.++.+++|++...  ...... .|...+..++|+|++         ++|++++ 
T Consensus       348 -~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~--~~~~~~-~~~~~~~~~~~~~~~---------~~l~~~~-  410 (464)
T 3v7d_B          348 -LQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDY--SRKFSY-HHTNLSAITTFYVSD---------NILVSGS-  410 (464)
T ss_dssp             -ECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTC--CEEEEE-ECTTCCCEEEEEECS---------SEEEEEE-
T ss_pred             -EeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCC--ceeeee-cCCCCccEEEEEeCC---------CEEEEec-
Confidence             578999999999984   67888888999999998764  333333 356678888999998         6888887 


Q ss_pred             CCCeEEEEcCCCccc
Q 020107          315 YDRLLRIWMPESDCL  329 (331)
Q Consensus       315 ~d~~i~iW~~~~~~~  329 (331)
                       |+.|++||++++.+
T Consensus       411 -dg~i~iwd~~~g~~  424 (464)
T 3v7d_B          411 -ENQFNIYNLRSGKL  424 (464)
T ss_dssp             -TTEEEEEETTTCCE
T ss_pred             -CCeEEEEECCCCcE
Confidence             89999999998754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2e-35  Score=246.81  Aligned_cols=275  Identities=10%  Similarity=0.064  Sum_probs=223.9

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eEEeEeeecCcEeEEEEcCCCCCCCC-eE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LELLYRMDTAGIFDIKWSPVGGNAGP-FL   85 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~-~l   85 (331)
                      +.+.+.+++|+|.+   ++|++|+          .||.|++|++...... .......|...|.+++|+|+    ++ +|
T Consensus        10 h~~~v~~~~~s~~~---~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l   72 (342)
T 1yfq_A           10 PKDYISDIKIIPSK---SLLLITS----------WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN----TDLQI   72 (342)
T ss_dssp             CSSCEEEEEEEGGG---TEEEEEE----------TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES----SSEEE
T ss_pred             CCCcEEEEEEcCCC---CEEEEEc----------CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC----CCcEE
Confidence            45678899999866   7999998          7999999999876411 12333578999999999999    89 99


Q ss_pred             EEEcCCccE-EEec-CCCc-----c--cCccEEEEEEcCCCCeEEEEecCCeEEEEEccc---------cceeeeeeeec
Q 020107           86 AQADADGGL-LRDI-TGEK-----I--SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE---------SQLEVLQQWKA  147 (331)
Q Consensus        86 ~~~~~dg~i-iw~~-~~~~-----~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~  147 (331)
                      ++++.||.+ +|++ .+.+     .  |...|.+++|+| ++.|++++.|+.|++||+++         ++  ++..+. 
T Consensus        73 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~-  148 (342)
T 1yfq_A           73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTK-  148 (342)
T ss_dssp             EEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSS-
T ss_pred             EEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC--eeeEEe-
Confidence            999999999 9999 6643     3  778899999999 99999999999999999986         43  345555 


Q ss_pred             ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC-CCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107          148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE-SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR  226 (331)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~  226 (331)
                      |...+.+++|+| +.  +++++.|+.|++||+++ +........ ..|...|.+++|+|.++.++++++.||.|++||++
T Consensus       149 ~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          149 VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred             eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence            888999999998 43  99999999999999998 553322222 33888999999998456899999999999999998


Q ss_pred             CC-----CCCceeeeeecCC---------ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC-Ccceeee
Q 020107          227 SI-----SKPVNETSVCLGG---------GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH-GSLAYGA  291 (331)
Q Consensus       227 ~~-----~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~  291 (331)
                      ..     ..+... +..|..         .|.+++|+|++ ..+++++.++.+++|++..  ++.+..+.+| ...|+++
T Consensus       225 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~h~~~v~~~  300 (342)
T 1yfq_A          225 DQGDDYNSSKRFA-FRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQT--RKKIKNFAKFNEDSVVKI  300 (342)
T ss_dssp             TTCCSTTCTTCEE-EECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTT--TEEEEECCCCSSSEEEEE
T ss_pred             CCCccccccccee-eecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCcc--HhHhhhhhcccCCCceEe
Confidence            75     244443 456644         99999999987 6777888888999999876  5778889998 9999999


Q ss_pred             eecCCCCcccccccCcEEEEeecCCCe-EEEEc
Q 020107          292 DWQRGRSSLEGKRKNSLVATCSFYDRL-LRIWM  323 (331)
Q Consensus       292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~-i~iW~  323 (331)
                      +  |++         ++|++++ .||. .+.|.
T Consensus       301 ~--~~~---------~~l~s~s-~Dg~~~~~~~  321 (342)
T 1yfq_A          301 A--CSD---------NILCLAT-SDDTFKTNAA  321 (342)
T ss_dssp             E--ECS---------SEEEEEE-ECTHHHHCSS
T ss_pred             c--CCC---------CeEEEEe-cCCccccccc
Confidence            9  887         6999999 8998 44443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.2e-35  Score=254.63  Aligned_cols=259  Identities=15%  Similarity=0.266  Sum_probs=215.6

Q ss_pred             CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc
Q 020107           24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK  102 (331)
Q Consensus        24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~  102 (331)
                      +++|++|+          .||.|++||+.+.+  ......+|...|.+++|  +    +++|++|+.||.+ +|++.+.+
T Consensus       143 ~~~l~~g~----------~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~--~----~~~l~sg~~dg~i~vwd~~~~~  204 (435)
T 1p22_A          143 DQKIVSGL----------RDNTIKIWDKNTLE--CKRILTGHTGSVLCLQY--D----ERVIITGSSDSTVRVWDVNTGE  204 (435)
T ss_dssp             SSEEEEEE----------SSSCEEEEESSSCC--EEEEECCCSSCEEEEEC--C----SSEEEEEETTSCEEEEESSSCC
T ss_pred             CCEEEEEe----------CCCeEEEEeCCCCe--EEEEEcCCCCcEEEEEE--C----CCEEEEEcCCCeEEEEECCCCc
Confidence            38999998          79999999998875  44555789999999999  4    5699999999999 99998765


Q ss_pred             c------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee-eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEE
Q 020107          103 I------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE-VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS  175 (331)
Q Consensus       103 ~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  175 (331)
                      .      |...|.+++|++  +.+++|+.||.|++||+.+++.. ....+.+|...|.+++|.   ++++++++.||.|+
T Consensus       205 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~  279 (435)
T 1p22_A          205 MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIK  279 (435)
T ss_dssp             EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEE
T ss_pred             EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEE
Confidence            4      678899999964  69999999999999999886532 235677899999999983   47999999999999


Q ss_pred             EEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCe
Q 020107          176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGL  255 (331)
Q Consensus       176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  255 (331)
                      +||+++++....+..   |...|.++.++   +.++++|+.|+.|++||++++ .++.. +..|...|.+++|.+   ..
T Consensus       280 vwd~~~~~~~~~~~~---~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~-~~~~~-~~~h~~~v~~~~~~~---~~  348 (435)
T 1p22_A          280 VWNTSTCEFVRTLNG---HKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-ACLRV-LEGHEELVRCIRFDN---KR  348 (435)
T ss_dssp             EEETTTCCEEEEEEC---CSSCEEEEEEE---TTEEEEEETTSCEEEEETTTC-CEEEE-ECCCSSCEEEEECCS---SE
T ss_pred             EEECCcCcEEEEEcC---CCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCC-CEEEE-EeCCcCcEEEEEecC---CE
Confidence            999999988777776   99999999985   579999999999999999985 44444 578999999999932   67


Q ss_pred             EEEEEecCcEEEEEEcCcc-------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          256 VLAACMHNGFAVVKVGGEK-------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +++++.++.+++|++....       ...+..+.+|.+.|++++|  ++         .+|++++ .||.|++||+.+..
T Consensus       349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~---------~~l~s~s-~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DE---------FQIVSSS-HDDTILIWDFLNDP  416 (435)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CS---------SCEEECC-SSSEEEEEC-----
T ss_pred             EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CC---------CEEEEEe-CCCEEEEEECCCCC
Confidence            8888889999999986532       1178888999999999999  44         5899999 99999999997754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-36  Score=277.78  Aligned_cols=239  Identities=15%  Similarity=0.167  Sum_probs=186.2

Q ss_pred             eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107            6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      +-+...+.+++|+|.+   ++||+|+          .||.|+||+....+  .... ..|...|.+++|+|.    . +|
T Consensus        14 ~gh~~~V~~lafspdg---~~lAsgs----------~Dg~I~lw~~~~~~--~~~~-~~~~~~V~~l~fspg----~-~L   72 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQ---NLLAIAT----------VTGEVHIYGQQQVE--VVIK-LEDRSAIKEMRFVKG----I-YL   72 (902)
T ss_dssp             EECSSCEEEEEEETTT---TEEEEEE----------TTSEEEEECSTTCE--EEEE-CSSCCCEEEEEEETT----T-EE
T ss_pred             cCCCCCcEEEEECCCC---CEEEEEe----------CCCEEEEEeCCCcE--EEEE-cCCCCCEEEEEEcCC----C-EE
Confidence            3456778899999887   8999999          79999999987654  2222 347788999999994    4 89


Q ss_pred             EEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee---------eeeecccc
Q 020107           86 AQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL---------QQWKAHEF  150 (331)
Q Consensus        86 ~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~  150 (331)
                      ++++.|+.+ +|++.+.+.     +...|.+++|+|++++|++|+.||.|++||+++++....         ..+.+|..
T Consensus        73 ~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~  152 (902)
T 2oaj_A           73 VVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS  152 (902)
T ss_dssp             EEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred             EEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCC
Confidence            999999999 999987654     467899999999999999999999999999998754211         23467889


Q ss_pred             eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc---------------cCCCcceEEEEEecCCCCEEEEEe
Q 020107          151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS---------------KIHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      .|++++|+|.+...+++|+.|+.| +||+++++....+...               ..|...|.+++|+| ++.+|++++
T Consensus       153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs  230 (902)
T 2oaj_A          153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIH  230 (902)
T ss_dssp             CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEE
T ss_pred             CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEE
Confidence            999999999656789999999999 9999998766666541               12357899999999 999999999


Q ss_pred             cCCeEEEEEecCCCCCcee-ee---e-------------ecCCceEEEEECC----CCCCeEEEEEecC------cEEEE
Q 020107          216 YDEYLRVWDVRSISKPVNE-TS---V-------------CLGGGVWRIKHHP----FIPGLVLAACMHN------GFAVV  268 (331)
Q Consensus       216 ~d~~i~iwd~~~~~~~~~~-~~---~-------------~~~~~v~~~~~~~----~~~~~~~~~~~~~------~~~~~  268 (331)
                      .|+.|++||++++ +++.. .+   .             .|..+|++++|++    ++ ..++++++.+      .+.+|
T Consensus       231 ~Dg~i~lWd~~~g-~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~-~~ll~sg~~~~~~~~~~v~~~  308 (902)
T 2oaj_A          231 EDNSLVFWDANSG-HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEY-TSLLISHKSISRGDNQSLTMI  308 (902)
T ss_dssp             TTCCEEEEETTTC-CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTE-EEEEEEEECSTTSSCCCEEEE
T ss_pred             CCCeEEEEECCCC-cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCC-CEEEEeCCCCCCCCCceEEEE
Confidence            9999999999885 43321 00   0             1345799999964    32 2455555332      56666


Q ss_pred             E
Q 020107          269 K  269 (331)
Q Consensus       269 ~  269 (331)
                      +
T Consensus       309 ~  309 (902)
T 2oaj_A          309 D  309 (902)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-36  Score=277.91  Aligned_cols=293  Identities=10%  Similarity=0.044  Sum_probs=210.4

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eE--------EeEeeecCcEeEEEEcCC
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LE--------LLYRMDTAGIFDIKWSPV   77 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~--------~~~~~~~~~v~~~~~~~~   77 (331)
                      ...+.+.+++|+|.+   ++|++|+          .||.|++||+...... ..        ....+|.+.|++++|+|+
T Consensus        96 ~~~~~V~~v~~sp~g---~~l~sgs----------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           96 FVPGKITSIDTDASL---DWMLIGL----------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             ECSSCEEEEECCTTC---SEEEEEE----------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             cCCCCEEEEEECCCC---CEEEEEc----------CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            345678888888776   8999998          8999999999876511 00        123568889999999996


Q ss_pred             CCCCCCeEEEEcCCccEEEecCCCcc------------------------cCccEEEEEEcCCCCeEEEEecCCeEEEEE
Q 020107           78 GGNAGPFLAQADADGGLLRDITGEKI------------------------SSSMCLCLEWNPSATSITVGLSDGSVSIVS  133 (331)
Q Consensus        78 ~~~~~~~l~~~~~dg~iiw~~~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  133 (331)
                      +   ...|++|+.||.++|++.+.+.                        |...|.+++|+|++++|++|+.||.|++||
T Consensus       163 ~---~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          163 D---IGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD  239 (902)
T ss_dssp             E---EEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             C---CCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence            3   4689999999999999987542                        236799999999999999999999999999


Q ss_pred             ccccceeeeeee---ec-------------ccceeEEEeeCC----CCCcEEEEEcCC-----CeEEEEE----------
Q 020107          134 VVESQLEVLQQW---KA-------------HEFELWATSFDV----HQPHMVYTGSDD-----CKFSGWD----------  178 (331)
Q Consensus       134 ~~~~~~~~~~~~---~~-------------~~~~v~~~~~~~----~~~~~l~~~~~d-----g~i~i~d----------  178 (331)
                      +++++....+.+   ..             |...|++++|++    +++.++++|+.+     ..+.+|+          
T Consensus       240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~  319 (902)
T 2oaj_A          240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT  319 (902)
T ss_dssp             TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGC
T ss_pred             CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcccc
Confidence            988754222222   11             344788888853    122455555433     1444444          


Q ss_pred             -------------------------------------------------------------ccCCCceee----eecccC
Q 020107          179 -------------------------------------------------------------IRESPFKLA----FQNSKI  193 (331)
Q Consensus       179 -------------------------------------------------------------~~~~~~~~~----~~~~~~  193 (331)
                                                                                   +.++.....    ......
T Consensus       320 s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~  399 (902)
T 2oaj_A          320 SYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSW  399 (902)
T ss_dssp             CHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTT
T ss_pred             chhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccc
Confidence                                                                         332211100    000011


Q ss_pred             CCcceEE----------------------------------EEEecCCCCEEEEEecCCeEEEEEecCCCCCc---eeee
Q 020107          194 HKMGVCC----------------------------------IASIPSDSNTLLTGSYDEYLRVWDVRSISKPV---NETS  236 (331)
Q Consensus       194 ~~~~v~~----------------------------------~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~  236 (331)
                      |...|++                                  ++|+| ++++|++|+.|++|++||+..+....   ....
T Consensus       400 ~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~  478 (902)
T 2oaj_A          400 LRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVN  478 (902)
T ss_dssp             BTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEE
T ss_pred             cCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEee
Confidence            2233444                                  44567 88999999999999999998753110   1100


Q ss_pred             ------eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc------------------------------------
Q 020107          237 ------VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK------------------------------------  274 (331)
Q Consensus       237 ------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------  274 (331)
                            ..|...|++++|+|++ ..+++++.++.+++|++....                                    
T Consensus       479 l~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (902)
T 2oaj_A          479 LSRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRA  557 (902)
T ss_dssp             HHHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGC
T ss_pred             chhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccC
Confidence                  1688899999999998 778888889999999996531                                    


Q ss_pred             -------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          275 -------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       275 -------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                             .+++..+.+|.+.|++++|+|++          +||+|+ .|++|++||+++..
T Consensus       558 ~~~~~~g~~~~~~l~~h~~~V~svafSpdG----------~lAsgs-~D~tv~lwd~~~~~  607 (902)
T 2oaj_A          558 PTGVRQGFMPSTAVHANKGKTSAINNSNIG----------FVGIAY-AAGSLMLIDRRGPA  607 (902)
T ss_dssp             CTTCSEEEEEEEEECCCSCSEEEEEECBTS----------EEEEEE-TTSEEEEEETTTTE
T ss_pred             CCCCCCccceeEEEEcCCCcEEEEEecCCc----------EEEEEe-CCCcEEEEECCCCe
Confidence                   03467788999999999999996          899999 99999999998753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.9e-35  Score=247.74  Aligned_cols=244  Identities=14%  Similarity=0.068  Sum_probs=207.2

Q ss_pred             EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107           62 YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSDGSVSIV  132 (331)
Q Consensus        62 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  132 (331)
                      +..|..+|++++|+|+    +++|++++.|+.+ +|++.+.+        .|...|.+++|+|++++|++++.||.|++|
T Consensus         4 ~~~~~~~i~~~~~s~~----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKD----RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EESCSSCCCEEEECTT----SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ecccCCCeEEEEECCC----CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence            4568899999999999    9999999999999 99998874        268899999999999999999999999999


Q ss_pred             EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee-cccCCCcceEEEEEecCCCCEE
Q 020107          133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ-NSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      |+++++......+..|...|.+++|+| ++++|++++.|+.|++||++......... ....|...|.+++|+| ++.+|
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l  157 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLL  157 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEE
Confidence            998876555555677899999999998 78999999999999999999876422221 1244899999999999 99999


Q ss_pred             EEEecCCeEEEEEecC-----------------CCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc
Q 020107          212 LTGSYDEYLRVWDVRS-----------------ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK  274 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (331)
                      ++++.|+.|++||++.                 ...++.. +..|...|.+++|+|++ ..+++++.++.+++|++..  
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~--  233 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE-SSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADK--  233 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE-CCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGG--
T ss_pred             EEEcCCCCEEEEEcccccccccccccccccccchhhheEe-cCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCC--
Confidence            9999999999999752                 1123333 45789999999999997 6788888888899999876  


Q ss_pred             cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          275 AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       275 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ++.+..+..|...|.+++|+|++         .+|+++  .|+.|++|++.+
T Consensus       234 ~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~--~d~~i~i~~~~~  274 (372)
T 1k8k_C          234 KMAVATLASETLPLLAVTFITES---------SLVAAG--HDCFPVLFTYDS  274 (372)
T ss_dssp             TTEEEEEECSSCCEEEEEEEETT---------EEEEEE--TTSSCEEEEEET
T ss_pred             CceeEEEccCCCCeEEEEEecCC---------CEEEEE--eCCeEEEEEccC
Confidence            57888899999999999999998         566655  599999999987

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.4e-35  Score=263.39  Aligned_cols=277  Identities=14%  Similarity=0.147  Sum_probs=232.5

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCc----ccceEEeEeeecCc-EeEEEEcC--CCCC
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAE----EKNLELLYRMDTAG-IFDIKWSP--VGGN   80 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~----~~~~~~~~~~~~~~-v~~~~~~~--~~~~   80 (331)
                      ..+.+.+++|+|.+   ++||+++           ++.|++|++.+.    .  ....+.+|... |++++|+|  +   
T Consensus        17 ~~~~v~~~~~spdg---~~l~~~~-----------~~~v~v~~~~~~~~~~~--~~~~~~~h~~~~v~~~~~sp~~~---   77 (615)
T 1pgu_A           17 QRNFTTHLSYDPTT---NAIAYPC-----------GKSAFVRCLDDGDSKVP--PVVQFTGHGSSVVTTVKFSPIKG---   77 (615)
T ss_dssp             CTTCCCCCEEETTT---TEEEEEE-----------TTEEEEEECCSSCCSSC--SEEEECTTTTSCEEEEEECSSTT---
T ss_pred             ccCceeEEEECCCC---CEEEEec-----------CCeEEEEECCCCCCccc--cceEEecCCCceEEEEEECcCCC---
Confidence            45678899999987   8999997           889999999876    4  33445789999 99999999  8   


Q ss_pred             CCCeEEEEcCCccE-EEecCCC--------c------ccCccEEEEEEcCCCCeEEEEecC----CeEEEEEccccceee
Q 020107           81 AGPFLAQADADGGL-LRDITGE--------K------ISSSMCLCLEWNPSATSITVGLSD----GSVSIVSVVESQLEV  141 (331)
Q Consensus        81 ~~~~l~~~~~dg~i-iw~~~~~--------~------~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~  141 (331)
                       +++|++++.||.+ +|++.+.        .      .|...|.+++|+|++++|++++.+    +.|++||.  +  ..
T Consensus        78 -~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~--~~  152 (615)
T 1pgu_A           78 -SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--G--NS  152 (615)
T ss_dssp             -CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--C--CE
T ss_pred             -CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--C--Cc
Confidence             8999999999999 9999643        1      257889999999999999999987    78999983  3  24


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc---ceEEEEEecCC-CCEEEEEecC
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM---GVCCIASIPSD-SNTLLTGSYD  217 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~-~~~l~~~~~d  217 (331)
                      +..+.+|...|.+++|+|.+...+++++.|+.|++||+++++....+..   |..   .|.+++|+| + +++|++++.|
T Consensus       153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~-~~~~~l~~~~~d  228 (615)
T 1pgu_A          153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT---HHKQGSFVRDVEFSP-DSGEFVITVGSD  228 (615)
T ss_dssp             EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS---SSCTTCCEEEEEECS-TTCCEEEEEETT
T ss_pred             ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc---cCCCCceEEEEEECC-CCCCEEEEEeCC
Confidence            6778899999999999994444899999999999999998877766665   888   999999999 7 9999999999


Q ss_pred             CeEEEEEecCCCCCceeeee---ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC----Ccceee
Q 020107          218 EYLRVWDVRSISKPVNETSV---CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH----GSLAYG  290 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~  290 (331)
                      +.|++||++++ +++..+..   .|...|.+++|+ ++ ..+++++.++.+++|++..  ++.+..+..+    ...+.+
T Consensus       229 g~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~  303 (615)
T 1pgu_A          229 RKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTT--SKCVQKWTLDKQQLGNQQVG  303 (615)
T ss_dssp             CCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTT--TEEEEEEECCTTCGGGCEEE
T ss_pred             CeEEEEECCCC-CEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCC--CcEEEEEcCCCCcccCceeE
Confidence            99999999985 55555224   899999999999 65 6777777888899999876  5677777765    467888


Q ss_pred             eeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +.|. ++         .++++++ .|+.|++||+.++.
T Consensus       304 ~~~~-~~---------~~l~~~~-~~g~i~~~d~~~~~  330 (615)
T 1pgu_A          304 VVAT-GN---------GRIISLS-LDGTLNFYELGHDE  330 (615)
T ss_dssp             EEEE-ET---------TEEEEEE-TTSCEEEEETTEEE
T ss_pred             EEeC-CC---------CeEEEEE-CCCCEEEEECCCCc
Confidence            8886 55         6999999 99999999988643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.3e-34  Score=250.52  Aligned_cols=256  Identities=14%  Similarity=0.251  Sum_probs=219.5

Q ss_pred             CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc
Q 020107           24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK  102 (331)
Q Consensus        24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~  102 (331)
                      +++|++|+          .||.|++||+.+.+  ......+|...|.+++|+++      +|++|+.||.+ +|++.+.+
T Consensus       129 g~~l~sg~----------~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~------~l~s~~~dg~i~vwd~~~~~  190 (445)
T 2ovr_B          129 GNRIVSGS----------DDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDN------IIISGSTDRTLKVWNAETGE  190 (445)
T ss_dssp             TTEEEEEE----------TTSCEEEEETTTCC--EEEECCCCSSCEEEEEEETT------EEEEEETTSCEEEEETTTTE
T ss_pred             CCEEEEEE----------CCCcEEEEECCCCc--EEEEEcCCCCCEEEEEecCC------EEEEEeCCCeEEEEECCcCc
Confidence            48999998          79999999998875  44445789999999999865      99999999999 99998765


Q ss_pred             c------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107          103 I------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG  176 (331)
Q Consensus       103 ~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (331)
                      .      |...|.++.|+  ++.+++|+.||.|++||+.+++.  +..+.+|...|.+++|   ++..+++++.||.|++
T Consensus       191 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          191 CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC--LHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKV  263 (445)
T ss_dssp             EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE--EEEEECCSSCEEEEEE---CSSCEEEEETTSCEEE
T ss_pred             EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE--EEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEE
Confidence            3      67889999995  57899999999999999998754  7778889999999998   3578999999999999


Q ss_pred             EEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeE
Q 020107          177 WDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLV  256 (331)
Q Consensus       177 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  256 (331)
                      ||+++++....+..   |...|.++.|   ++.++++++.|+.|++||++++ +++.. +..|...+.++.+++   ..+
T Consensus       264 wd~~~~~~~~~~~~---~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~-~~~~~-~~~~~~~v~~~~~~~---~~l  332 (445)
T 2ovr_B          264 WDPETETCLHTLQG---HTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG-NCIHT-LTGHQSLTSGMELKD---NIL  332 (445)
T ss_dssp             EEGGGTEEEEEECC---CSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC-CEEEE-ECCCCSCEEEEEEET---TEE
T ss_pred             EECCCCcEeEEecC---CCCceEEEEE---CCCEEEEEeCCCeEEEEECCCC-CEEEE-EcCCcccEEEEEEeC---CEE
Confidence            99999887777765   9999999999   5789999999999999999985 44443 478889999999864   578


Q ss_pred             EEEEecCcEEEEEEcCcccceeEEeec---CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          257 LAACMHNGFAVVKVGGEKAEVLETYAK---HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ++++.++.+++|++..  ++.+..+.+   |...|++++|++           ++|++++ .||.|++||+.++..
T Consensus       333 ~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~-----------~~l~s~~-~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          333 VSGNADSTVKIWDIKT--GQCLQTLQGPNKHQSAVTCLQFNK-----------NFVITSS-DDGTVKLWDLKTGEF  394 (445)
T ss_dssp             EEEETTSCEEEEETTT--CCEEEEECSTTSCSSCEEEEEECS-----------SEEEEEE-TTSEEEEEETTTCCE
T ss_pred             EEEeCCCeEEEEECCC--CcEEEEEccCCCCCCCEEEEEECC-----------CEEEEEe-CCCeEEEEECCCCce
Confidence            8888889999999876  577778876   888999999963           4899999 999999999988753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-36  Score=256.38  Aligned_cols=245  Identities=12%  Similarity=0.073  Sum_probs=193.4

Q ss_pred             eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC--c------ccCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107           61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE--K------ISSSMCLCLEWNPSATSITVGLSDGSVSI  131 (331)
Q Consensus        61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~--~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  131 (331)
                      +...+..+|++++|+|+    +++|++++.|+.+ +|++.+.  +      .|...|.+++|+|++++|++++.|+.|++
T Consensus         6 ~~~~~~~~v~~~~~s~~----g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v   81 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQ----RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV   81 (377)
T ss_dssp             EEEECSSCCSCCEECSS----SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred             eEecCCCcEEEEEECCC----CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            34557789999999999    8999999999999 9999875  2      26889999999999999999999999999


Q ss_pred             EEccccc-eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC-CCcceEEEEEecCCCC
Q 020107          132 VSVVESQ-LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI-HKMGVCCIASIPSDSN  209 (331)
Q Consensus       132 ~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  209 (331)
                      ||+.+++ ..+...+..|...|.+++|+| ++++|++++.|+.|++||+++++.......... |...|.+++|+| ++.
T Consensus        82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~  159 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNV  159 (377)
T ss_dssp             C------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSS
T ss_pred             EEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCC
Confidence            9999876 445667778999999999999 889999999999999999998763222222233 899999999999 999


Q ss_pred             EEEEEecCCeEEEEEecCCC-----------------CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          210 TLLTGSYDEYLRVWDVRSIS-----------------KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       210 ~l~~~~~d~~i~iwd~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      +|++++.|+.|++||++...                 .++.. + .|...|.+++|+|++ .++++++.++.+++|++..
T Consensus       160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE-Y-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC-C-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECS
T ss_pred             EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc-c-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCC
Confidence            99999999999999996321                 12222 2 889999999999997 6777888888999999987


Q ss_pred             ccc--ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          273 EKA--EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       273 ~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      ...  ..+..+.+|...|++++|+|++         ++|++++ .|+.+ +|+..
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~-~~~~~-~~~~~  280 (377)
T 3dwl_C          237 PEQPPRALITVKLSQLPLRSLLWANES---------AIVAAGY-NYSPI-LLQGN  280 (377)
T ss_dssp             TTSCEEECCCEECSSSCEEEEEEEETT---------EEEEEES-SSSEE-EECCC
T ss_pred             CCCcceeeEeecCCCCceEEEEEcCCC---------CEEEEEc-CCcEE-EEEeC
Confidence            522  1277788999999999999998         7888887 66665 66654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.9e-35  Score=266.60  Aligned_cols=247  Identities=16%  Similarity=0.203  Sum_probs=205.6

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----------ccCccEEEEEEcCCCCeEEEEec
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----------ISSSMCLCLEWNPSATSITVGLS  125 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~  125 (331)
                      ....+++|.+.|++++|+|++   .++|++|+.|+.+ +|++....           .|...|.+++|+|++++|++|+.
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~---~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~  450 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDN---ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW  450 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTC---CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             hhhhcccCCceeEEEEecCCC---CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence            334568899999999999984   5799999999999 99987532           27888999999999999999999


Q ss_pred             CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107          126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP  205 (331)
Q Consensus       126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  205 (331)
                      ||+|++||+.+++.  ...+.+|...|.+++|+| ++.+|++++.|+.|++||..............+|...|.+++|+|
T Consensus       451 Dg~v~vwd~~~~~~--~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  527 (694)
T 3dm0_A          451 DGELRLWDLAAGVS--TRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP  527 (694)
T ss_dssp             TSEEEEEETTTTEE--EEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred             CCcEEEEECCCCcc--eeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence            99999999998754  778889999999999999 789999999999999999876543333333345899999999999


Q ss_pred             CCC--CEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec
Q 020107          206 SDS--NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK  283 (331)
Q Consensus       206 ~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (331)
                       ++  ..|++++.|++|++||+++. +... .+..|.+.|++++|+|++ .++++++.++.+++|++..  ++.+..+..
T Consensus       528 -~~~~~~l~s~s~d~~v~vwd~~~~-~~~~-~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~--~~~~~~~~~  601 (694)
T 3dm0_A          528 -NTLQPTIVSASWDKTVKVWNLSNC-KLRS-TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAE--GKKLYSLEA  601 (694)
T ss_dssp             -CSSSCEEEEEETTSCEEEEETTTC-CEEE-EECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTT--TEEEECCBC
T ss_pred             -CCCcceEEEEeCCCeEEEEECCCC-cEEE-EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCC--CceEEEecC
Confidence             54  68999999999999999975 3333 357899999999999997 6777888888999999877  456666554


Q ss_pred             CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                       ...|.+++|+|++         .+|++++  |+.|++||+.++.
T Consensus       602 -~~~v~~~~~sp~~---------~~l~~~~--~~~i~iwd~~~~~  634 (694)
T 3dm0_A          602 -NSVIHALCFSPNR---------YWLCAAT--EHGIKIWDLESKS  634 (694)
T ss_dssp             -SSCEEEEEECSSS---------SEEEEEE--TTEEEEEETTTTE
T ss_pred             -CCcEEEEEEcCCC---------cEEEEEc--CCCEEEEECCCCC
Confidence             5679999999997         5666655  7889999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.4e-35  Score=262.30  Aligned_cols=276  Identities=16%  Similarity=0.184  Sum_probs=214.3

Q ss_pred             cceeEeeecC-CCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe---eecCcEeEEEEcCCCCCCCCeEE
Q 020107           11 NADAVEFCPQ-DSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR---MDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus        11 ~~~~v~~~~~-~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      .+.+++|+|. +   ++|++|+          .+|.|++||+.+.+ .+..+..   .|...|.+++|+ +    +.+|+
T Consensus       208 ~v~~~~~~~~~~---~~l~~~~----------~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~----~~~l~  268 (615)
T 1pgu_A          208 FVRDVEFSPDSG---EFVITVG----------SDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWL-D----SQKFA  268 (615)
T ss_dssp             CEEEEEECSTTC---CEEEEEE----------TTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEES-S----SSEEE
T ss_pred             eEEEEEECCCCC---CEEEEEe----------CCCeEEEEECCCCC-EeEEecccccccCCceEEEEEc-C----CCEEE
Confidence            5778888887 5   8999998          79999999998875 3444425   789999999999 7    88999


Q ss_pred             EEcCCccE-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           87 QADADGGL-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      +++.||.+ +|++.+.+.          ....+.++.|. +++.+++++.||.|++||+.+++  ++..+.+|...|.++
T Consensus       269 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~v~~~  345 (615)
T 1pgu_A          269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDE--VLKTISGHNKGITAL  345 (615)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEE--EEEEECCCSSCEEEE
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCc--EEEEEeCCCCCEEEE
Confidence            99999999 999987653          13667888886 88999999999999999998754  355555555555555


Q ss_pred             eeCCC--------------------------------CCcEEEEEcCCCeEEEEEc------------------------
Q 020107          156 SFDVH--------------------------------QPHMVYTGSDDCKFSGWDI------------------------  179 (331)
Q Consensus       156 ~~~~~--------------------------------~~~~l~~~~~dg~i~i~d~------------------------  179 (331)
                      +| |.                                .+..+++++.|+.|++||+                        
T Consensus       346 ~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  424 (615)
T 1pgu_A          346 TV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT  424 (615)
T ss_dssp             ET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEE
T ss_pred             Ee-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEe
Confidence            54 31                                1344445554554444444                        


Q ss_pred             --------------------------------------------------cCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107          180 --------------------------------------------------RESPFKLAFQNSKIHKMGVCCIASIPSDSN  209 (331)
Q Consensus       180 --------------------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  209 (331)
                                                                        .+++...  .....|...|.+++|+| ++.
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~-~g~  501 (615)
T 1pgu_A          425 NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISP-SET  501 (615)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECT-TSS
T ss_pred             CCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc--cccCCccCceEEEEECC-CCC
Confidence                                                              3332110  22245889999999999 999


Q ss_pred             EEEEEecCCeEEEEEecCCCCCceeeeee-cCCceEEEEECC----------CCCCeEEEEEecCcEEEEEEcCccccee
Q 020107          210 TLLTGSYDEYLRVWDVRSISKPVNETSVC-LGGGVWRIKHHP----------FIPGLVLAACMHNGFAVVKVGGEKAEVL  278 (331)
Q Consensus       210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (331)
                      +|++++.|+.|++||+.+. +++.. +.. |...|++++|+|          ++ .++++++.++.+++|++... .+.+
T Consensus       502 ~l~~~~~dg~i~iw~~~~~-~~~~~-~~~~h~~~v~~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~-~~~~  577 (615)
T 1pgu_A          502 YIAAGDVMGKILLYDLQSR-EVKTS-RWAFRTSKINAISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYSVKRP-MKII  577 (615)
T ss_dssp             EEEEEETTSCEEEEETTTT-EEEEC-CSCCCSSCEEEEEECCCC------CCSC-CEEEEEETTSCEEEEESSCT-TCCE
T ss_pred             EEEEcCCCCeEEEeeCCCC-cceeE-eecCCCCceeEEEEcCccccccccccCC-CEEEEEcCCCcEEEEECCCC-ceec
Confidence            9999999999999999985 44444 344 999999999999          76 67777778889999999774 3778


Q ss_pred             EEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          279 ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       279 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ..+.+|...|++++|+|++         + |++++ .|+.|++|+++.+
T Consensus       578 ~~~~~h~~~v~~l~~s~~~---------~-l~s~~-~d~~v~iw~~~~~  615 (615)
T 1pgu_A          578 KALNAHKDGVNNLLWETPS---------T-LVSSG-ADACIKRWNVVLE  615 (615)
T ss_dssp             EETTSSTTCEEEEEEEETT---------E-EEEEE-TTSCEEEEEEC--
T ss_pred             hhhhcCccceEEEEEcCCC---------C-eEEec-CCceEEEEeeecC
Confidence            8899999999999999998         7 99999 9999999998753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-34  Score=246.62  Aligned_cols=283  Identities=12%  Similarity=0.035  Sum_probs=220.2

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeE-----------------------
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLY-----------------------   62 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~-----------------------   62 (331)
                      +..++.+|+|+|.+   ++|+++.           ++.|++||+.+++.  .+....                       
T Consensus         3 ~~~p~~~v~~s~dg---~~l~~~~-----------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (450)
T 2vdu_B            3 VIHPLQNLLTSRDG---SLVFAII-----------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSE   68 (450)
T ss_dssp             EECCCCEEEECSSS---SEEEEEE-----------TTEEEEEEEETTTEEEEEEEEECCC--------------------
T ss_pred             ccccEEEEEecCCC---CEEEEEe-----------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccc
Confidence            45678899998887   7888776           88999999877651  011110                       


Q ss_pred             ------------------------------eeecCcEeEEEEcCCCCCCCCeE-EEEcCCccE-EEecC--CCcc-----
Q 020107           63 ------------------------------RMDTAGIFDIKWSPVGGNAGPFL-AQADADGGL-LRDIT--GEKI-----  103 (331)
Q Consensus        63 ------------------------------~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i-iw~~~--~~~~-----  103 (331)
                                                    ..|...|++++|+|+    +++| ++++.||.+ +|++.  +.+.     
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~  144 (450)
T 2vdu_B           69 NENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD----ESRLIACADSDKSLLVFDVDKTSKNVLKLRK  144 (450)
T ss_dssp             -------------------------------CCCCCEEEEEECTT----SSEEEEEEGGGTEEEEEEECSSSSSCEEEEE
T ss_pred             ccccccccccCcCccccccCccccCCCCCCCccCCceEEEEEcCC----CCEEEEEECCCCeEEEEECcCCCCceeeeee
Confidence                                          123447999999999    8885 899999999 99998  5432     


Q ss_pred             ---cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee--eeeeeecccceeEEEeeCCCC---CcEEEEEcCCCeEE
Q 020107          104 ---SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE--VLQQWKAHEFELWATSFDVHQ---PHMVYTGSDDCKFS  175 (331)
Q Consensus       104 ---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~  175 (331)
                         +...|.+++|+|++++|++|+.+|.|++|++.+++..  +...+.+|...|++++|+| +   +.+|++++.|+.|+
T Consensus       145 ~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~  223 (450)
T 2vdu_B          145 RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIK  223 (450)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEE
T ss_pred             cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEE
Confidence               3578999999999999999999999999999876532  3346778999999999999 6   78999999999999


Q ss_pred             EEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee------------------
Q 020107          176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV------------------  237 (331)
Q Consensus       176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------  237 (331)
                      +||+++++....+.  .+|...|.+++|+  ++.+|++++.|+.|++||++++ +.+..+..                  
T Consensus       224 vwd~~~~~~~~~~~--~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (450)
T 2vdu_B          224 ISHYPQCFIVDKWL--FGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRF  298 (450)
T ss_dssp             EEEESCTTCEEEEC--CCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----
T ss_pred             EEECCCCceeeeee--cCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccc
Confidence            99999887665533  2399999999999  8899999999999999999985 43433211                  


Q ss_pred             ------ecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCccc---ceeEEeecCCcceeeeeecCCCCcccccccCc
Q 020107          238 ------CLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKA---EVLETYAKHGSLAYGADWQRGRSSLEGKRKNS  307 (331)
Q Consensus       238 ------~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  307 (331)
                            .....|.+++|+|++ ..+++++ .++.+++|++.+...   ..+..+..| ..|.+++|+|++          
T Consensus       299 ~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~----------  366 (450)
T 2vdu_B          299 QNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE----------  366 (450)
T ss_dssp             ------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE----------
T ss_pred             cccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc----------
Confidence                  234578999999987 5666666 788899999932223   667778887 889999999964          


Q ss_pred             EEEEeecC------CCeEEEEcCCC
Q 020107          308 LVATCSFY------DRLLRIWMPES  326 (331)
Q Consensus       308 ~l~s~~~~------d~~i~iW~~~~  326 (331)
                      ++++.+..      +..|.+|.++.
T Consensus       367 ~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          367 FQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEEEEecccCCCCCCcceEEEEEEc
Confidence            66665413      45588887643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7e-34  Score=246.00  Aligned_cols=265  Identities=14%  Similarity=0.219  Sum_probs=223.3

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      +.+.++.|.     +++|++|+          .||.|++||+.+++  ......+|...|.++.|++.      .|++++
T Consensus       160 ~~v~~~~~~-----~~~l~s~~----------~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~------~l~s~s  216 (445)
T 2ovr_B          160 GGVWSSQMR-----DNIIISGS----------TDRTLKVWNAETGE--CIHTLYGHTSTVRCMHLHEK------RVVSGS  216 (445)
T ss_dssp             SCEEEEEEE-----TTEEEEEE----------TTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETT------EEEEEE
T ss_pred             CCEEEEEec-----CCEEEEEe----------CCCeEEEEECCcCc--EEEEECCCCCcEEEEEecCC------EEEEEe
Confidence            445566664     26899998          79999999998875  34445789999999999765      899999


Q ss_pred             CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      .||.+ +|++.+.+.      |...+.+++|  +++.+++|+.||.|++||+++++  .+..+.+|...|.+++|   ++
T Consensus       217 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~---~~  289 (445)
T 2ovr_B          217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF---DG  289 (445)
T ss_dssp             TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE---CS
T ss_pred             CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEE---CC
Confidence            99999 999987653      6788999999  78899999999999999999874  47788889999999999   45


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee---c
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC---L  239 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~  239 (331)
                      ..+++++.|+.|++||+++++....+..   |...+.++.++   ++++++++.||.|++||++++ +++.. +..   |
T Consensus       290 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~-~~~~~-~~~~~~~  361 (445)
T 2ovr_B          290 IHVVSGSLDTSIRVWDVETGNCIHTLTG---HQSLTSGMELK---DNILVSGNADSTVKIWDIKTG-QCLQT-LQGPNKH  361 (445)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECC---CCSCEEEEEEE---TTEEEEEETTSCEEEEETTTC-CEEEE-ECSTTSC
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEEcC---CcccEEEEEEe---CCEEEEEeCCCeEEEEECCCC-cEEEE-EccCCCC
Confidence            7899999999999999999987777766   89999988875   569999999999999999885 44444 233   8


Q ss_pred             CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe-----ecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107          240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY-----AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  314 (331)
                      ...|.+++|++   ..+++++.++.+++|++..  ++.+..+     .+|.+.|++++|+|++         .++++++ 
T Consensus       362 ~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~la~~~-  426 (445)
T 2ovr_B          362 QSAVTCLQFNK---NFVITSSDDGTVKLWDLKT--GEFIRNLVTLESGGSGGVVWRIRASNTK---------LVCAVGS-  426 (445)
T ss_dssp             SSCEEEEEECS---SEEEEEETTSEEEEEETTT--CCEEEEEEECTTGGGTCEEEEEEECSSE---------EEEEEEC-
T ss_pred             CCCEEEEEECC---CEEEEEeCCCeEEEEECCC--CceeeeeeccccCCCCceEEEEEecCCE---------EEEEEcc-
Confidence            88999999975   6788888888899999877  4666666     4788999999999998         7999999 


Q ss_pred             CCCe----EEEEcCCCc
Q 020107          315 YDRL----LRIWMPESD  327 (331)
Q Consensus       315 ~d~~----i~iW~~~~~  327 (331)
                      .||+    |.+||++..
T Consensus       427 ~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          427 RNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             SSSSSCCEEEEEECCCC
T ss_pred             cCCCCccEEEEEECCCC
Confidence            9998    999999865

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-34  Score=243.24  Aligned_cols=248  Identities=18%  Similarity=0.198  Sum_probs=203.5

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +.+.+.+++|+|.+   ++||+|+          .||.|++|++............+|...|++++|+|+..  +.+|++
T Consensus        10 h~~~v~~~~~s~~~---~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~l~s   74 (379)
T 3jrp_A           10 HNELIHDAVLDYYG---KRLATCS----------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF--GTILAS   74 (379)
T ss_dssp             CCCCEEEEEECSSS---SEEEEEE----------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG--CSEEEE
T ss_pred             CcccEEEEEEcCCC---CEEEEEE----------CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCC--CCEEEE
Confidence            45567788887766   8999998          79999999998544345555678999999999986521  569999


Q ss_pred             EcCCccE-EEecCCCcc--------cCccEEEEEEcCC--CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107           88 ADADGGL-LRDITGEKI--------SSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  156 (331)
                      ++.||.+ +|++.+.+.        |...|.+++|+|+  ++.|++++.||.|++||+..+.......+..|...|.+++
T Consensus        75 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~  154 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  154 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred             eccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence            9999999 999988641        6788999999999  9999999999999999999875545566778999999999


Q ss_pred             eCCC------------CCcEEEEEcCCCeEEEEEccCCCceee-eecccCCCcceEEEEEecCC---CCEEEEEecCCeE
Q 020107          157 FDVH------------QPHMVYTGSDDCKFSGWDIRESPFKLA-FQNSKIHKMGVCCIASIPSD---SNTLLTGSYDEYL  220 (331)
Q Consensus       157 ~~~~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i  220 (331)
                      |+|.            ++.++++++.|+.|++||++++..... ......|...|.+++|+| +   +.+|++++.|+.|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~dg~i  233 (379)
T 3jrp_A          155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYLASVSQDRTC  233 (379)
T ss_dssp             ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEETTSCE
T ss_pred             EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-CCCCCCeEEEEeCCCEE
Confidence            9985            578999999999999999997764322 222345999999999999 7   8999999999999


Q ss_pred             EEEEecCCCCCceee---eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          221 RVWDVRSISKPVNET---SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       221 ~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      ++||++....+....   ...|...|++++|+|++ ..+++++.++.+++|++..
T Consensus       234 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          234 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEE
T ss_pred             EEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCC
Confidence            999999864332221   12378899999999997 6777888899999999873

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=243.52  Aligned_cols=251  Identities=16%  Similarity=0.221  Sum_probs=202.8

Q ss_pred             ceEEeEeeecCcEeEEEEcCCCCCCC-CeEEEEcC---CccE-EEecCCCcc-------cCccEEEEEEcCC---CCeEE
Q 020107           57 NLELLYRMDTAGIFDIKWSPVGGNAG-PFLAQADA---DGGL-LRDITGEKI-------SSSMCLCLEWNPS---ATSIT  121 (331)
Q Consensus        57 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~---dg~i-iw~~~~~~~-------~~~~v~~~~~~~~---~~~l~  121 (331)
                      .+..+..+|...|.+++|+|+    + .++++++.   ||.+ +|++.+.+.       |...|.+++|+|+   +++|+
T Consensus         9 ~~~~~~~~h~~~v~~~~~~p~----~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~   84 (357)
T 3i2n_A            9 IIAHIQKGFNYTVFDCKWVPC----SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLA   84 (357)
T ss_dssp             EEEEEEEECSSCEEEEEECTT----SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred             HhhhhccCCCCceEEEEEcCC----CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEE
Confidence            455666889999999999998    5 45667776   8999 999987654       5779999999998   69999


Q ss_pred             EEecCCeEEEEEccccceeeeeeeecccceeEEEe------eCCCCCcEEEEEcCCCeEEEEEccCCC-ceeeeecccC-
Q 020107          122 VGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS------FDVHQPHMVYTGSDDCKFSGWDIRESP-FKLAFQNSKI-  193 (331)
Q Consensus       122 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~-  193 (331)
                      +|+.||.|++||+.+++ ..+..+.+|...|.+++      |+| ++++|++++.|+.|++||+++++ ....+..... 
T Consensus        85 ~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  162 (357)
T 3i2n_A           85 TGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE  162 (357)
T ss_dssp             EEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred             EecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence            99999999999999875 24677889999999995      566 77899999999999999999876 4555544111 


Q ss_pred             CCcceEEEE----EecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECC---CCCCeEEEEEecCcEE
Q 020107          194 HKMGVCCIA----SIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP---FIPGLVLAACMHNGFA  266 (331)
Q Consensus       194 ~~~~v~~~~----~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~  266 (331)
                      +...+.++.    |+| ++.+|++++.|+.|++||+++. +...  ...|...|.+++|+|   ++ ..+++++.++.++
T Consensus       163 ~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~--~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~  237 (357)
T 3i2n_A          163 NKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNM-ALRW--ETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFH  237 (357)
T ss_dssp             CCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTT-EEEE--EEECSSCEEEEEESCSSSSC-CEEEEEESTTEEE
T ss_pred             CCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccC-ceee--ecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEE
Confidence            234899998    677 8999999999999999999985 3333  378899999999999   65 7788888889999


Q ss_pred             EEEEcCcccce---eEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          267 VVKVGGEKAEV---LETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       267 ~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      +|++.......   ...+.+|...|++++|+|++.        .+|++++ .||.|++||+.++
T Consensus       238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~-~dg~i~iwd~~~~  292 (357)
T 3i2n_A          238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR--------ELFLTAG-GAGGLHLWKYEYP  292 (357)
T ss_dssp             EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE--------EEEEEEE-TTSEEEEEEEECC
T ss_pred             EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC--------cEEEEEe-CCCcEEEeecCCC
Confidence            99997642111   123448999999999999983        3899999 9999999998754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-36  Score=262.06  Aligned_cols=243  Identities=13%  Similarity=0.135  Sum_probs=188.8

Q ss_pred             ecCcEeEEEEcCCCCCCC-----CeEEE-------------------EcCCccE-EEecCCCcc----------cCccEE
Q 020107           65 DTAGIFDIKWSPVGGNAG-----PFLAQ-------------------ADADGGL-LRDITGEKI----------SSSMCL  109 (331)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~-----~~l~~-------------------~~~dg~i-iw~~~~~~~----------~~~~v~  109 (331)
                      +.+.|.+|+|+|+.+...     ++||+                   ++.|+.+ ||++.+.+.          |...|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            467788888888731100     45555                   5567778 999977642          357799


Q ss_pred             EEEEcCC------CCeEEEEecCCeEEEEEccccce---------eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107          110 CLEWNPS------ATSITVGLSDGSVSIVSVVESQL---------EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKF  174 (331)
Q Consensus       110 ~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  174 (331)
                      +++|+|+      +.+||+++.||+|++||+..+..         .+...+.+|...|++++|+| + ..|++|+.||+|
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV  289 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFV  289 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEE
Confidence            9999996      57899999999999999986532         12346778999999999997 4 589999999999


Q ss_pred             EEEEccCCCc-eeeeecccCCCcceEEE--EEecCCC-CEEEEEecCCeEEEEEecCCCCCceeeeeecC--CceEEEEE
Q 020107          175 SGWDIRESPF-KLAFQNSKIHKMGVCCI--ASIPSDS-NTLLTGSYDEYLRVWDVRSISKPVNETSVCLG--GGVWRIKH  248 (331)
Q Consensus       175 ~i~d~~~~~~-~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~  248 (331)
                      ++||++++.. ...+..   |...|++|  .|+| ++ .+|++++.|++|++||+++. ++... +..|.  ..|.+++|
T Consensus       290 ~lWD~~~~~~~~~~~~~---H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~-~~~~~-~~~~~~~~~v~~v~f  363 (524)
T 2j04_B          290 AEFDLTDPEVPSFYDQV---HDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDI-ATTKT-TVSRFRGSNLVPVVY  363 (524)
T ss_dssp             EEEETTBCSSCSEEEEC---SSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGH-HHHCE-EEEECSCCSCCCEEE
T ss_pred             EEEECCCCCCceEEeec---ccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCC-Ccccc-cccccccCcccceEe
Confidence            9999997643 233454   99999999  5677 76 89999999999999999985 33333 24554  35889999


Q ss_pred             CCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          249 HPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +|++ ..+++++.++.+++|++..  +..+.++.+|.+.|++++|+|++         ++|++|+ .|++|++||+....
T Consensus       364 sp~~-~~l~s~~~d~tv~lwd~~~--~~~~~~l~gH~~~V~sva~Sp~g---------~~l~Sgs-~Dgtv~lwd~~~~~  430 (524)
T 2j04_B          364 CPQI-YSYIYSDGASSLRAVPSRA--AFAVHPLVSRETTITAIGVSRLH---------PMVLAGS-ADGSLIITNAARRL  430 (524)
T ss_dssp             ETTT-TEEEEECSSSEEEEEETTC--TTCCEEEEECSSCEEEEECCSSC---------CBCEEEE-TTTEEECCBSCSST
T ss_pred             CCCc-CeEEEeCCCCcEEEEECcc--cccceeeecCCCceEEEEeCCCC---------CeEEEEE-CCCEEEEEechHhh
Confidence            9986 5677777888899999876  46667788999999999999998         6999999 99999999987653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.3e-35  Score=248.13  Aligned_cols=245  Identities=16%  Similarity=0.163  Sum_probs=196.0

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCC-CeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcC-CCCeEEEEecC
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAG-PFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNP-SATSITVGLSD  126 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~-~~~~l~~~~~d  126 (331)
                      +.....+|...|++++|+|+    + ++|++|+.||.+ +|++.+.+.        |...|.+++|+| +++.|++++.|
T Consensus        65 ~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEWHPT----HPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             EEEEECCCSSCEEEEEECSS----CTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             eEEeccCCCCCEEEEEECCC----CCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            34455789999999999999    6 899999999999 999986532        678999999999 67899999999


Q ss_pred             CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS  206 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  206 (331)
                      +.|++||+++.....+.....|...|.+++|+| ++.+|++++.|+.|++||++ ++....+..   |...|.+++|+| 
T Consensus       141 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~---h~~~v~~~~~~~-  214 (383)
T 3ei3_B          141 GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHEIFKEKL---HKAKVTHAEFNP-  214 (383)
T ss_dssp             TEEEEEETTSCEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCEEEEEEC---SSSCEEEEEECS-
T ss_pred             CEEEEEECCCCceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCEEEEecc---CCCcEEEEEECC-
Confidence            999999999654333333334558899999999 88999999999999999995 555666655   999999999999 


Q ss_pred             CCC-EEEEEecCCeEEEEEecCCC---CCceeeeeecCCceEEEEECC-CCCCeEEEEEecCcEEEEEEcCcccceeEEe
Q 020107          207 DSN-TLLTGSYDEYLRVWDVRSIS---KPVNETSVCLGGGVWRIKHHP-FIPGLVLAACMHNGFAVVKVGGEKAEVLETY  281 (331)
Q Consensus       207 ~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (331)
                      ++. +|++++.|+.|++||+++.+   ..+..  ..|...|.+++|+| ++ ..+++++.++.+++|++...  +....+
T Consensus       215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~--~~~~~~  289 (383)
T 3ei3_B          215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAE--MPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDW--SKPDQI  289 (383)
T ss_dssp             SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE--EECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBT--TSCSEE
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCCCcccceEEE--ecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCC--cccccc
Confidence            777 99999999999999999843   22333  47999999999999 76 77888888899999998764  333444


Q ss_pred             ecCC-----------------cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          282 AKHG-----------------SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       282 ~~h~-----------------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      .+|.                 ..+..++|+|++         ++  +++ .|+.|++||+.++..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg---------~~--s~s-~d~~i~iwd~~~~~~  342 (383)
T 3ei3_B          290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD---------QL--LLN-DKRTIDIYDANSGGL  342 (383)
T ss_dssp             EECCBCCCTTSCCCCCEECSSSSEEEEECBCCT---------TT--CTT-CCCCEEEEETTTCCE
T ss_pred             ccccccccccccceEEeccCCCCceEEEecCCc---------cc--ccC-CCCeEEEEecCCCce
Confidence            4332                 233346666665         34  778 899999999987653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.8e-35  Score=247.91  Aligned_cols=252  Identities=15%  Similarity=0.215  Sum_probs=208.8

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEEcCC----CCeEEEE
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEWNPS----ATSITVG  123 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~~~~----~~~l~~~  123 (331)
                      .+..+|...|++++|+|+.+.+...+++++.++.+ +|++.+.+.           +...|.+++|+|+    +++|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            55568999999999998421114567777777788 999986543           3477999999998    6689999


Q ss_pred             ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEE
Q 020107          124 LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIAS  203 (331)
Q Consensus       124 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  203 (331)
                      +.||.|++||+.+++.  +..+.+|...|.+++|+|.++++|++++.||.|++||+++++....+.....|...|.+++|
T Consensus        92 ~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A           92 GSRGIIRIINPITMQC--IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             ETTCEEEEECTTTCCE--EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred             cCCCEEEEEEchhceE--eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence            9999999999998754  77788899999999999867899999999999999999998877666433449999999999


Q ss_pred             ecCCCCEEEEEecCCeEEEEEecCCCCCcee---------------------------eeeecCCceEEEEECCCCCCeE
Q 020107          204 IPSDSNTLLTGSYDEYLRVWDVRSISKPVNE---------------------------TSVCLGGGVWRIKHHPFIPGLV  256 (331)
Q Consensus       204 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~~~  256 (331)
                      +| ++.+|++++.|+.|++||+++.+ ....                           ....|...|.+++|++   ..+
T Consensus       170 ~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l  244 (366)
T 3k26_A          170 DL-LGEKIMSCGMDHSLKLWRINSKR-MMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG---DLI  244 (366)
T ss_dssp             CT-TSSEEEEEETTSCEEEEESCSHH-HHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET---TEE
T ss_pred             CC-CCCEEEEecCCCCEEEEECCCCc-cccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcC---CEE
Confidence            99 99999999999999999998742 1111                           1123889999999992   688


Q ss_pred             EEEEecCcEEEEEEcCccc------------ceeEEeecCCcceeeeeecCC--CCcccccccCcEEEEeecCCCeEEEE
Q 020107          257 LAACMHNGFAVVKVGGEKA------------EVLETYAKHGSLAYGADWQRG--RSSLEGKRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~l~s~~~~d~~i~iW  322 (331)
                      ++++.++.+++|++.....            ..+..+.+|...|++++|+|+  +         ++|++++ .||.|++|
T Consensus       245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---------~~l~~~~-~dg~i~vw  314 (366)
T 3k26_A          245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ---------KMLALGN-QVGKLYVW  314 (366)
T ss_dssp             EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS---------SEEEEEC-TTSCEEEE
T ss_pred             EEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC---------cEEEEEe-cCCcEEEE
Confidence            8888899999999977432            457888899999999999999  7         7999999 99999999


Q ss_pred             cCCCcc
Q 020107          323 MPESDC  328 (331)
Q Consensus       323 ~~~~~~  328 (331)
                      |+.++.
T Consensus       315 d~~~~~  320 (366)
T 3k26_A          315 DLEVED  320 (366)
T ss_dssp             ECCSSS
T ss_pred             ECCCCC
Confidence            998864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.6e-35  Score=286.05  Aligned_cols=274  Identities=14%  Similarity=0.139  Sum_probs=234.5

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ...+.+++++|.+   +++++|+          .+|.|++|++....  ......+|...|++++|+|+    +++|+++
T Consensus       961 ~~~i~~~~~sp~g---~~l~~g~----------~~g~i~i~d~~~~~--~~~~~~~h~~~v~~l~~s~d----g~~l~s~ 1021 (1249)
T 3sfz_A          961 EAQVSCCCLSPHL---EYVAFGD----------EDGAIKIIELPNNR--VFSSGVGHKKAVRHIQFTAD----GKTLISS 1021 (1249)
T ss_dssp             CSCEEEEEECTTS---SEEEEEE----------TTSCCEEEETTTTS--CEEECCCCSSCCCCEEECSS----SSCEEEE
T ss_pred             cCcEEEEEEcCCC---CEEEEEc----------CCCCEEEEEcCCCc--eeeecccCCCceEEEEECCC----CCEEEEE
Confidence            4567788888876   8999998          79999999998875  44445789999999999999    8999999


Q ss_pred             cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      +.||.+ +|++.+.+.     |...+.++.|+|++ .+++++.||.|++||+.+++.  ...+.+|...|.+++|+| ++
T Consensus      1022 ~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~s~-d~ 1097 (1249)
T 3sfz_A         1022 SEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI--ERDFTCHQGTVLSCAISS-DA 1097 (1249)
T ss_dssp             CSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC--CEEEECCSSCCCCEEECS-SS
T ss_pred             cCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce--eEEEcccCCcEEEEEECC-CC
Confidence            999999 999987654     67889999999965 578899999999999998864  777888999999999999 88


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee-------
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET-------  235 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------  235 (331)
                      .++++++.|+.|++||+.+++....+..   |...|++++|+| ++.+|++++.||.|++||+.+++ .+...       
T Consensus      1098 ~~l~s~s~d~~v~iwd~~~~~~~~~l~~---h~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~~~~-~~~~~~~~~~~~ 1172 (1249)
T 3sfz_A         1098 TKFSSTSADKTAKIWSFDLLSPLHELKG---HNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQ-LLHSCAPISVEE 1172 (1249)
T ss_dssp             SSCEEECCSSCCCEECSSSSSCSBCCCC---CSSCEEEEEECS-SSSEEEEEETTSCCCEEESSSSC-CCCCCCCCC---
T ss_pred             CEEEEEcCCCcEEEEECCCcceeeeecc---CCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCCCc-eEEEeccccccc
Confidence            8999999999999999999887777766   999999999999 99999999999999999999853 33221       


Q ss_pred             -eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107          236 -SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       236 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  314 (331)
                       ...|.+.|++++|+|++ ..++++ + +.+++|++..  ++.+..+..|...|++++|+|++         ++|++++ 
T Consensus      1173 ~~~~~~~~v~~l~fs~dg-~~l~s~-~-g~v~vwd~~~--g~~~~~~~~~~~~i~~~~~s~dg---------~~l~~~~- 1237 (1249)
T 3sfz_A         1173 GTATHGGWVTDVCFSPDS-KTLVSA-G-GYLKWWNVAT--GDSSQTFYTNGTNLKKIHVSPDF---------RTYVTVD- 1237 (1249)
T ss_dssp             ----CCSCCCEEEECTTS-SCEEEE-S-SSEEEBCSSS--CBCCCCCCCSSCCCCCCEECSSS---------CCEEEEC-
T ss_pred             cccccCceEEEEEECCCC-CEEEEC-C-CeEEEEECCC--CceeeeeeccCCcccEEEECCCC---------CEEEEec-
Confidence             25688999999999996 444444 3 7888888776  57777888899999999999998         6999999 


Q ss_pred             CCCeEEEEcCC
Q 020107          315 YDRLLRIWMPE  325 (331)
Q Consensus       315 ~d~~i~iW~~~  325 (331)
                      .||.|++|++.
T Consensus      1238 ~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1238 NLGILYILQVL 1248 (1249)
T ss_dssp             TTCCEEEECCC
T ss_pred             CCcEEEEEeec
Confidence            99999999975

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-34  Score=246.85  Aligned_cols=259  Identities=14%  Similarity=0.164  Sum_probs=205.2

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC-eEEEEcCCccE-EEec----CCCcc-------------
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP-FLAQADADGGL-LRDI----TGEKI-------------  103 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i-iw~~----~~~~~-------------  103 (331)
                      ...+.+|+++...  .......|...|++++|+|+    ++ +|++++.||.+ +|++    .+.+.             
T Consensus        24 ~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   97 (425)
T 1r5m_A           24 NSIDSSDDLDGFV--KILKEIVKLDNIVSSTWNPL----DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP   97 (425)
T ss_dssp             ----------CCC--EECEEEEECSCCSEEEECSS----CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC
T ss_pred             ccccccccchhhh--hheeeeeccCceEEEEECCC----CCcEEEEecCCceEEEEEEecccCCcccccccccccccccc
Confidence            4556777776653  22222456789999999999    88 99999999999 9999    66551             


Q ss_pred             ---------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107          104 ---------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKF  174 (331)
Q Consensus       104 ---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  174 (331)
                               |...|.+++|+|++++|++++.||.|++||. +++  .+..+..|...|.+++|+| ++++|++++.|+.|
T Consensus        98 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i  173 (425)
T 1r5m_A           98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGA--LLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVT  173 (425)
T ss_dssp             CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSC--EEEEECCCCSCEEEEEECT-TSSEEEEEETTCCE
T ss_pred             ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC--eeeeccCCCccEEEEEECC-CCCEEEEEecCCeE
Confidence                     3558999999999999999999999999994 343  3677888999999999999 78899999999999


Q ss_pred             EEEEccCCCceeeee-----------------------------------------------------cccCCCcceEEE
Q 020107          175 SGWDIRESPFKLAFQ-----------------------------------------------------NSKIHKMGVCCI  201 (331)
Q Consensus       175 ~i~d~~~~~~~~~~~-----------------------------------------------------~~~~~~~~v~~~  201 (331)
                      ++||+++++....+.                                                     ....|...|.++
T Consensus       174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~  253 (425)
T 1r5m_A          174 ILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL  253 (425)
T ss_dssp             EEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEE
T ss_pred             EEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEE
Confidence            999998765432211                                                     112478899999


Q ss_pred             EEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe
Q 020107          202 ASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY  281 (331)
Q Consensus       202 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (331)
                      +|+| ++.+|++++.|+.|++||+++. +++.. +..|...|.+++|+|++  .+++++.++.+++|++..  ++.+..+
T Consensus       254 ~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~-~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~--~~~~~~~  326 (425)
T 1r5m_A          254 EFND-TNKLLLSASDDGTLRIWHGGNG-NSQNC-FYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ--NTLLALS  326 (425)
T ss_dssp             EEET-TTTEEEEEETTSCEEEECSSSB-SCSEE-ECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT--TEEEEEE
T ss_pred             EECC-CCCEEEEEcCCCEEEEEECCCC-ccceE-ecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC--CcEeEec
Confidence            9999 8999999999999999999985 44444 46799999999999984  788888888899999876  5788888


Q ss_pred             ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          282 AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       282 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ..|...|.+++|+|++         ++|++++ .||.|++|++.++.
T Consensus       327 ~~~~~~i~~~~~s~~~---------~~l~~~~-~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          327 IVDGVPIFAGRISQDG---------QKYAVAF-MDGQVNVYDLKKLN  363 (425)
T ss_dssp             ECTTCCEEEEEECTTS---------SEEEEEE-TTSCEEEEECHHHH
T ss_pred             ccCCccEEEEEEcCCC---------CEEEEEE-CCCeEEEEECCCCc
Confidence            8999999999999998         6999999 99999999997654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-35  Score=249.15  Aligned_cols=264  Identities=10%  Similarity=0.066  Sum_probs=208.2

Q ss_pred             eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107            5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   84 (331)
                      +..+..-+.+|+|+|++   +++|+++          .|++|+  +....+    .+ .+|...|++++|+|+    +  
T Consensus        11 ~~~~~~~v~sv~~SpDG---~~iASas----------~D~TV~--d~~~~~----~l-~gh~~~v~~V~FsPd----g--   64 (588)
T 2j04_A           11 RKEFEDWKNNLTWARDG---TLYLTTF----------PDISIG--QPKYAK----DI-NCNSKNLFHVKEFPL----E--   64 (588)
T ss_dssp             SCCCSSSSCCEEECTTS---CEEEECS----------SSEEEE--EECCCS----CC-SSBGGGTEEEEEECC----C--
T ss_pred             HhHhhccEEEEEECCCC---CEEEEEc----------CCceee--cccccc----ee-cCCCccEEEEEECCC----C--
Confidence            44677889999999988   8999998          899999  643332    22 689999999999999    7  


Q ss_pred             EEEEcCCccE-EEecCCCc----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc-----eeEE
Q 020107           85 LAQADADGGL-LRDITGEK----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF-----ELWA  154 (331)
Q Consensus        85 l~~~~~dg~i-iw~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~v~~  154 (331)
                           .++.. +|+.....    .+...|.+++|+|+|+.||+++.||.|++||.+.    .+..+. |..     .+.+
T Consensus        65 -----~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~s  134 (588)
T 2j04_A           65 -----FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHC  134 (588)
T ss_dssp             -----CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEE
T ss_pred             -----CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEE
Confidence                 56666 77655332    2468899999999999999999999999999653    355555 554     4999


Q ss_pred             EeeCCCCCcEEEEEcCCCeEEEEEccCCCc-------eeeeec-ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107          155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPF-------KLAFQN-SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR  226 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~  226 (331)
                      ++|+| ++++|++|+.||+|++||+.++..       ...+.. ..+|...|.+++|+| ++  +++++.|++|++||+.
T Consensus       135 vafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~  210 (588)
T 2j04_A          135 FEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVS  210 (588)
T ss_dssp             EEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCC
T ss_pred             EEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECC
Confidence            99999 899999999999999999998753       233321 144888999999999 77  8888999999999998


Q ss_pred             CCCCC--ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeee--cCCCCcccc
Q 020107          227 SISKP--VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADW--QRGRSSLEG  302 (331)
Q Consensus       227 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~  302 (331)
                      .....  ...+...|...|.+++|+ +  ..+++++ ++.+++|++...  +......+|...|++++|  +|++     
T Consensus       211 ~~~~~~~~~tL~~~h~~~V~svaFs-g--~~LASa~-~~tIkLWd~~~~--~~~~~~~gh~~~V~~va~~~s~d~-----  279 (588)
T 2j04_A          211 ASSHQPVSRMIQNASRRKITDLKIV-D--YKVVLTC-PGYVHKIDLKNY--SISSLKTGSLENFHIIPLNHEKES-----  279 (588)
T ss_dssp             SSSSCCCEEEEECCCSSCCCCEEEE-T--TEEEEEC-SSEEEEEETTTT--EEEEEECSCCSCCCEEEETTCSSC-----
T ss_pred             CCccccceeeecccccCcEEEEEEE-C--CEEEEEe-CCeEEEEECCCC--eEEEEEcCCCceEEEEEeeeCCCC-----
Confidence            75321  122123688899999999 3  6666665 688899988763  332223389999999999  9998     


Q ss_pred             cccCcEEEEeecCCCeEEEEcCC
Q 020107          303 KRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       303 ~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                          ..+++++ +||+ ++|..+
T Consensus       280 ----~~La~a~-edG~-klw~~d  296 (588)
T 2j04_A          280 ----TILLMSN-KTSY-KVLLED  296 (588)
T ss_dssp             ----EEEEECS-SCEE-EEEESS
T ss_pred             ----CEEEEEc-CCCC-EEEeec
Confidence                6899998 9999 999875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8e-34  Score=236.78  Aligned_cols=258  Identities=14%  Similarity=0.207  Sum_probs=204.6

Q ss_pred             EEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEE
Q 020107           46 ISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEW  113 (331)
Q Consensus        46 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~  113 (331)
                      ++++.....+..++..+++|.+.|++|+|+|++   +++|++|+.|+.+ +|++...+.           |...|.+++|
T Consensus        18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~---~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~   94 (340)
T 4aow_A           18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQF---PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI   94 (340)
T ss_dssp             --------CEEEEEEEECCCSSCEEEEEECTTC---TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE
T ss_pred             EEEEEccCCceEEEEEECCccCCEEEEEEeCCC---CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEE
Confidence            444454444434666678999999999999984   5799999999999 999876432           5788999999


Q ss_pred             cCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC
Q 020107          114 NPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI  193 (331)
Q Consensus       114 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  193 (331)
                      +|++++|++++.|+.|++|+......  ......+...+....+++ .+..+++++.|+.+++||+..... .... ...
T Consensus        95 s~dg~~l~s~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~-~~~~-~~~  169 (340)
T 4aow_A           95 SSDGQFALSGSWDGTLRLWDLTTGTT--TRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCK-YTVQ-DES  169 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE-EEEC-SSS
T ss_pred             CCCCCEEEEEcccccceEEeecccce--eeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCce-EEEE-ecc
Confidence            99999999999999999999987654  555566777888999998 778999999999999999986543 2222 245


Q ss_pred             CCcceEEEEEecCC-CCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          194 HKMGVCCIASIPSD-SNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       194 ~~~~v~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      |...+..++|++.. ..++++++.|+.|++||+++. +.+.. +..|.++|++++|+|++ .++++++.++.+++|++..
T Consensus       170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~-~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTN-HIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTT
T ss_pred             ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeE-ecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEecc
Confidence            89999999998832 357889999999999999985 33333 57899999999999997 6778888888999999877


Q ss_pred             cccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          273 EKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       273 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                        .+.+..+.. ...|..+.|+|++          .+++++ .|+.|++||++++.
T Consensus       247 --~~~~~~~~~-~~~v~~~~~~~~~----------~~~~~~-~d~~i~iwd~~~~~  288 (340)
T 4aow_A          247 --GKHLYTLDG-GDIINALCFSPNR----------YWLCAA-TGPSIKIWDLEGKI  288 (340)
T ss_dssp             --TEEEEEEEC-SSCEEEEEECSSS----------SEEEEE-ETTEEEEEETTTTE
T ss_pred             --CceeeeecC-CceEEeeecCCCC----------ceeecc-CCCEEEEEECCCCe
Confidence              466666665 4679999999986          566666 79999999998753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-35  Score=268.10  Aligned_cols=252  Identities=17%  Similarity=0.247  Sum_probs=208.9

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC--------cccCccEEEEEEcCC--CCeEEEEecCCe
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE--------KISSSMCLCLEWNPS--ATSITVGLSDGS  128 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~--------~~~~~~v~~~~~~~~--~~~l~~~~~dg~  128 (331)
                      .+..+|.+.|++++|+|+    +++|++|+.||.+ +|++...        ..|...|.+++|+|+  ++.|++|+.||.
T Consensus         3 ~~l~gH~~~V~~l~~s~d----g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYY----GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             -----CCCCEEEECCCSS----SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             eecccCcceeEEEEECCC----CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            355789999999999999    8999999999999 9998743        237889999999988  899999999999


Q ss_pred             EEEEEccccceeeeeeeecccceeEEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC-
Q 020107          129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS-  206 (331)
Q Consensus       129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  206 (331)
                      |++||+.+++...+..+..|...|++++|+|.. ++.+++++.||.|++||++++........ ..|...|.++.|+|. 
T Consensus        79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~-~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWAPAT  157 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE-ECCSSCEEEEEECCCC
T ss_pred             EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe-ecCCCceEEEEecCcc
Confidence            999999988766678888899999999999932 88999999999999999998754333333 348999999999994 


Q ss_pred             -----------CCCEEEEEecCCeEEEEEecCCCCC--ceeeeeecCCceEEEEECCCC--CCeEEEEEecCcEEEEEEc
Q 020107          207 -----------DSNTLLTGSYDEYLRVWDVRSISKP--VNETSVCLGGGVWRIKHHPFI--PGLVLAACMHNGFAVVKVG  271 (331)
Q Consensus       207 -----------~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  271 (331)
                                 ++.+|++|+.||.|++||+++....  ....+..|.+.|++++|+|++  ...+++++.++.+++|++.
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                       4889999999999999999986432  222346789999999999993  3788888889999999998


Q ss_pred             Ccccc---eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          272 GEKAE---VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       272 ~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      .....   .......|...|++++|+|++         ++|++++ .||.|++|++.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg---------~~l~s~s-~Dg~I~vwd~~~  285 (753)
T 3jro_A          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSG---------NVLALSG-GDNKVTLWKENL  285 (753)
T ss_dssp             SSSSCCBCCBSSSSCCSSCCCCEEECTTT---------CCEEEEC-SSSCEECCBCCS
T ss_pred             CCCCcceeEEeccCCCCCceEEEEEcCCC---------CEEEEEc-CCCEEEEEecCC
Confidence            75322   223334688999999999998         6999999 999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.6e-34  Score=266.53  Aligned_cols=247  Identities=17%  Similarity=0.244  Sum_probs=214.0

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      +...+.+|...|++++|+|+    +++|++++.||.+ +|++.++..      |...|.+++|+|+++.|++++.||.|+
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~----~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~   80 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPT----EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSS----SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             cceeeecCCCceEEEEECCC----CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence            44566899999999999999    9999999999999 999987643      688999999999999999999999999


Q ss_pred             EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-CceeeeecccCCCcceEEEEEecCCCC
Q 020107          131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQNSKIHKMGVCCIASIPSDSN  209 (331)
Q Consensus       131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~  209 (331)
                      +||+.+++.  +..+.+|...|++++|+| ++.+|++++.||.|++||++++ .....+..   |...|.+++|+|.++.
T Consensus        81 vw~~~~~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~  154 (814)
T 3mkq_A           81 VFNYNTGEK--VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEG---HEHFVMCVAFNPKDPS  154 (814)
T ss_dssp             EEETTTCCE--EEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEEC---CSSCEEEEEEETTEEE
T ss_pred             EEECCCCcE--EEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcC---CCCcEEEEEEEcCCCC
Confidence            999998754  777888999999999999 7889999999999999999986 33445554   8999999999996678


Q ss_pred             EEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECC--CCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcc
Q 020107          210 TLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP--FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL  287 (331)
Q Consensus       210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  287 (331)
                      .|++++.|+.|++||++.. .+.......+...+..++|+|  ++ ..+++++.++.+++|++..  ++.+..+.+|...
T Consensus       155 ~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~--~~~~~~~~~~~~~  230 (814)
T 3mkq_A          155 TFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQT--KSCVATLEGHMSN  230 (814)
T ss_dssp             EEEEEETTSEEEEEETTCS-SCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTT--TEEEEEEECCSSC
T ss_pred             EEEEEeCCCeEEEEECCCC-cceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCC--CcEEEEEcCCCCC
Confidence            9999999999999999875 444443445558999999999  64 5677777778888888866  5778889999999


Q ss_pred             eeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          288 AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       288 v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      |.+++|+|++         ++|++++ .||.|++||+.++.
T Consensus       231 v~~~~~~~~~---------~~l~~~~-~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          231 VSFAVFHPTL---------PIIISGS-EDGTLKIWNSSTYK  261 (814)
T ss_dssp             EEEEEECSSS---------SEEEEEE-TTSCEEEEETTTCS
T ss_pred             EEEEEEcCCC---------CEEEEEe-CCCeEEEEECCCCc
Confidence            9999999998         6999999 99999999998754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.3e-34  Score=241.75  Aligned_cols=241  Identities=13%  Similarity=0.104  Sum_probs=206.1

Q ss_pred             eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc----c-----cCccEEEEEEcCCCC-eEEEEecCCeE
Q 020107           61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK----I-----SSSMCLCLEWNPSAT-SITVGLSDGSV  129 (331)
Q Consensus        61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~----~-----~~~~v~~~~~~~~~~-~l~~~~~dg~i  129 (331)
                      +..+|...|++++|+|+    +++|++++.||.+ +|++....    .     |...|.+++|+|+++ +|++|+.||.|
T Consensus         6 ~~~~h~~~v~~~~~s~~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   81 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPS----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             CSSCCSSCEEEEEEEGG----GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             cccCCCCcEEEEEEcCC----CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence            34579999999999999    8999999999999 99998766    2     678999999999999 99999999999


Q ss_pred             EEEEc-cccceeeeeeeec--ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC---------CCceeeeecccCCCcc
Q 020107          130 SIVSV-VESQLEVLQQWKA--HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE---------SPFKLAFQNSKIHKMG  197 (331)
Q Consensus       130 ~i~d~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~  197 (331)
                      ++||+ .+++.   ..+.+  |...|.+++|+|  ++.+++++.|+.|++||+++         ++....+.    |...
T Consensus        82 ~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~  152 (342)
T 1yfq_A           82 LKVDLIGSPSF---QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----VKNK  152 (342)
T ss_dssp             EEECSSSSSSE---EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS----SCCC
T ss_pred             EEEEeccCCce---EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe----eCCc
Confidence            99999 87653   56677  999999999998  68999999999999999987         55444433    7889


Q ss_pred             eEEEEEecCCCCEEEEEecCCeEEEEEecC-CCCCceeeeeecCCceEEEEECC-CCCCeEEEEEecCcEEEEEEcCc--
Q 020107          198 VCCIASIPSDSNTLLTGSYDEYLRVWDVRS-ISKPVNETSVCLGGGVWRIKHHP-FIPGLVLAACMHNGFAVVKVGGE--  273 (331)
Q Consensus       198 v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--  273 (331)
                      |.+++|+| ++  +++++.|+.|++||+++ ...+.......|...|.+++|+| ++ ..+++++.++.+++|++...  
T Consensus       153 v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~  228 (342)
T 1yfq_A          153 IFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             EEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCC
T ss_pred             eEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCc
Confidence            99999998 55  99999999999999998 65555544567889999999999 86 67788888888899988764  


Q ss_pred             c--cceeEEeecCCc---------ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          274 K--AEVLETYAKHGS---------LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       274 ~--~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      .  .+....+..|..         .|++++|+|++         ++|++++ .||.|++||+.++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~-~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH---------KFLYTAG-SDGIISCWNLQTRK  284 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT---------CCEEEEE-TTSCEEEEETTTTE
T ss_pred             ccccccceeeecccccccccccceeEEEEEEcCCC---------CEEEEec-CCceEEEEcCccHh
Confidence            1  366777887765         99999999998         6999999 99999999998765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.6e-34  Score=246.30  Aligned_cols=247  Identities=12%  Similarity=0.142  Sum_probs=205.4

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------c------cCccEEEEEEcCC----C---
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------I------SSSMCLCLEWNPS----A---  117 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~------~~~~v~~~~~~~~----~---  117 (331)
                      ....+.+|...|++++|+|.      +|++++.||.+ +|++...+      .      |...|.+++|+|+    +   
T Consensus         8 ~~~~~~~h~~~i~~~~~~~~------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~   81 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACNS------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL   81 (397)
T ss_dssp             EEEESSCSSSCEEEEEECSS------EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             hhhhhhhhhcCeEEEEecCC------eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccc
Confidence            34455789999999999986      99999999999 99998876      1      6788999999999    9   


Q ss_pred             CeEEEEecCCeEEEEEccccce---eeeeeeecc-----cceeEEEeeC----CCCCcE-EEEEcCCCeEEEEEccC---
Q 020107          118 TSITVGLSDGSVSIVSVVESQL---EVLQQWKAH-----EFELWATSFD----VHQPHM-VYTGSDDCKFSGWDIRE---  181 (331)
Q Consensus       118 ~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~i~i~d~~~---  181 (331)
                      ++|++++.||.|++||+.+++.   .....+..|     ...|.+++|+    | ++.. |++++.||.|++||+++   
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCcccc
Confidence            9999999999999999987642   114566667     5899999999    8 6788 99999999999999998   


Q ss_pred             ---CCcee-----eeec----ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee---c---CCce
Q 020107          182 ---SPFKL-----AFQN----SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC---L---GGGV  243 (331)
Q Consensus       182 ---~~~~~-----~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~---~~~v  243 (331)
                         ++...     .+..    ...|...|.+++|+| ++ +|++++.|+.|++||+++. +++.. +..   |   ...|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~-~~~~~-~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL-RPLYN-FESQHSMINNSNSI  236 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT-EEEEE-EECCC---CCCCCE
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCC-ceeEE-EeccccccccCCcc
Confidence               55544     4421    023788999999999 88 9999999999999999985 44444 455   7   8999


Q ss_pred             EEEEECCCCCCeEEEEEec---CcEEEEEEcCcccceeEEeec-------------CCcceeeeeecCCCCcccccccCc
Q 020107          244 WRIKHHPFIPGLVLAACMH---NGFAVVKVGGEKAEVLETYAK-------------HGSLAYGADWQRGRSSLEGKRKNS  307 (331)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~~~~~~~  307 (331)
                      .+++|+|++ ..+++++.+   +.+++|++..  ++.+..+.+             |...|.+++|+|++         +
T Consensus       237 ~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~  304 (397)
T 1sq9_A          237 RSVKFSPQG-SLLAIAHDSNSFGCITLYETEF--GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG---------E  304 (397)
T ss_dssp             EEEEECSST-TEEEEEEEETTEEEEEEEETTT--CCEEEEECBC--------CCBSBSSCEEEEEECSSS---------S
T ss_pred             ceEEECCCC-CEEEEEecCCCCceEEEEECCC--CcccceeccCcccccccccccccCCcEEEEEECCCC---------C
Confidence            999999996 677777777   7889999876  577888888             99999999999998         6


Q ss_pred             EEEEeecCCCeEEEEcCCCcc
Q 020107          308 LVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       308 ~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +|++++ .|+.|++||+.++.
T Consensus       305 ~l~~~~-~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          305 TLCSAG-WDGKLRFWDVKTKE  324 (397)
T ss_dssp             EEEEEE-TTSEEEEEETTTTE
T ss_pred             EEEEEe-CCCeEEEEEcCCCc
Confidence            999999 99999999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.1e-34  Score=248.40  Aligned_cols=249  Identities=15%  Similarity=0.154  Sum_probs=191.8

Q ss_pred             eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------ccCccEEEEEEcC-CCCeEEEEecCCeEE
Q 020107           61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------ISSSMCLCLEWNP-SATSITVGLSDGSVS  130 (331)
Q Consensus        61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  130 (331)
                      ...+|...|++|+|+|.+   ..+||+|+.||.| +|++.+.+        .|...|.+++|+| ++++|++|+.||+|+
T Consensus       114 ~~~~~~~~V~~l~~~P~~---~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTH---PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             EEEECSSCEEEEEECSSC---TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             cCCCCCCCEEEEEEeCCC---CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            346788899999999964   5699999999999 99987653        2688999999998 678999999999999


Q ss_pred             EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107          131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                      +||++++..........+...+.+++|+| ++.+|++|+.||.|++||++.. ....+..   |...|++++|+|....+
T Consensus       191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~---h~~~v~~v~~~p~~~~~  265 (435)
T 4e54_B          191 LQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGK-ELWNLRM---HKKKVTHVALNPCCDWF  265 (435)
T ss_dssp             EEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSC-BCCCSBC---CSSCEEEEEECTTCSSE
T ss_pred             EeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcc-eeEEEec---ccceEEeeeecCCCceE
Confidence            99998765433333334455678999998 8899999999999999999754 3445554   99999999999944568


Q ss_pred             EEEEecCCeEEEEEecCCCCCce-eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc---
Q 020107          211 LLTGSYDEYLRVWDVRSISKPVN-ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS---  286 (331)
Q Consensus       211 l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---  286 (331)
                      |++++.|+.|++||+++...... .....|...|++++|+|++ ..+++++.++.+++|++...  .....+..|..   
T Consensus       266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~--~~~~~~~~~~~~~~  342 (435)
T 4e54_B          266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQW--DCPLGLIPHPHRHF  342 (435)
T ss_dssp             EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSS--SSEEEECCCCCCCC
T ss_pred             EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCC--ccceEEeccccccc
Confidence            99999999999999988543221 1135789999999999997 77888888999999998763  44555554432   


Q ss_pred             ---ceeeeeecCCCCcccccccCcEEEEee-----------cCCCeEEEEcCCCccc
Q 020107          287 ---LAYGADWQRGRSSLEGKRKNSLVATCS-----------FYDRLLRIWMPESDCL  329 (331)
Q Consensus       287 ---~v~~~~~~~~~~~~~~~~~~~~l~s~~-----------~~d~~i~iW~~~~~~~  329 (331)
                         .+..+.|+|++         .++++++           ..++.|++||..++.+
T Consensus       343 ~~~~~~~~~~~~~~---------~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~  390 (435)
T 4e54_B          343 QHLTPIKAAWHPRY---------NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM  390 (435)
T ss_dssp             SSSCCCBCEECSSS---------SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred             ccceeEEEEEcCCC---------CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence               23345666665         2333332           1446899999988753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-33  Score=245.64  Aligned_cols=270  Identities=13%  Similarity=0.184  Sum_probs=218.3

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +.+.+.+++|+|.+    +|++|+          .||.|++||+.+..  ....+.+|...|.+++|++...  +.+|++
T Consensus       161 h~~~V~~l~~~~~~----~l~s~s----------~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~--~~~l~s  222 (464)
T 3v7d_B          161 HDGGVWALKYAHGG----ILVSGS----------TDRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKN--IKYIVT  222 (464)
T ss_dssp             CSSCEEEEEECSTT----EEEEEE----------TTSCEEEEETTTTE--EEEEECCCSSCEEEEEEEESSS--CEEEEE
T ss_pred             CCcCEEEEEEcCCC----EEEEEe----------CCCCEEEEECCCCc--EEEEECCCCCccEEEEEecCCC--CCEEEE
Confidence            34567777776643    888888          79999999999875  4445578999999999995311  689999


Q ss_pred             EcCCccE-EEecCCCcc-----------------------------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107           88 ADADGGL-LRDITGEKI-----------------------------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES  137 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~-----------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  137 (331)
                      ++.||.+ +|++.+...                             |...+.++  +++++.+++|+.||.|++||+.++
T Consensus       223 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~  300 (464)
T 3v7d_B          223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM  300 (464)
T ss_dssp             EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT
T ss_pred             EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999999 999876542                             34445555  567899999999999999999987


Q ss_pred             ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107          138 QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD  217 (331)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  217 (331)
                      +  .+..+.+|...|.+++|+| +++.+++++.||.|++||+++++....+..   |...|.++.|+   +.+|++++.|
T Consensus       301 ~--~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~---~~~l~s~s~d  371 (464)
T 3v7d_B          301 K--CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQG---HTALVGLLRLS---DKFLVSAAAD  371 (464)
T ss_dssp             E--EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEC---SSEEEEEETT
T ss_pred             c--EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeC---CCCcEEEEEEc---CCEEEEEeCC
Confidence            4  4778889999999999998 889999999999999999999887777766   99999999996   4799999999


Q ss_pred             CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE-eecCCcceeeeeecCC
Q 020107          218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET-YAKHGSLAYGADWQRG  296 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~  296 (331)
                      |.|++||+++.. ....  ..+...+..++|+|++  .++++++++.+++|++..  ++.+.. +.+|...|++++|+..
T Consensus       372 g~v~vwd~~~~~-~~~~--~~~~~~~~~~~~~~~~--~~l~~~~dg~i~iwd~~~--g~~~~~~~~~~~~~v~~v~~~~~  444 (464)
T 3v7d_B          372 GSIRGWDANDYS-RKFS--YHHTNLSAITTFYVSD--NILVSGSENQFNIYNLRS--GKLVHANILKDADQIWSVNFKGK  444 (464)
T ss_dssp             SEEEEEETTTCC-EEEE--EECTTCCCEEEEEECS--SEEEEEETTEEEEEETTT--CCEEESCTTTTCSEEEEEEEETT
T ss_pred             CcEEEEECCCCc-eeee--ecCCCCccEEEEEeCC--CEEEEecCCeEEEEECCC--CcEEehhhccCCCcEEEEEecCC
Confidence            999999999853 3333  4677788899999985  455556689999999887  466664 5678999999999843


Q ss_pred             CCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          297 RSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                                .++++++ .||.+.+|-+
T Consensus       445 ----------~l~~~~~-~~g~~~i~~l  461 (464)
T 3v7d_B          445 ----------TLVAAVE-KDGQSFLEIL  461 (464)
T ss_dssp             ----------EEEEEEE-ETTEEEEEEE
T ss_pred             ----------EEEEEEE-eCCeEEEEEe
Confidence                      5777777 7887766643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.7e-33  Score=242.44  Aligned_cols=248  Identities=19%  Similarity=0.283  Sum_probs=202.0

Q ss_pred             eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCc--------ccceEEeEeeecCcEeEEEEcCC
Q 020107            6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAE--------EKNLELLYRMDTAGIFDIKWSPV   77 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~   77 (331)
                      +.+.+.+.+++|+|.++  .+||+|+          .+|.|++|++...        .......+.+|...|.+++|+|+
T Consensus       125 ~~h~~~v~~l~~~p~~~--~~lat~~----------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  192 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNA--CVIATKT----------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPN  192 (430)
T ss_dssp             EEESSCCSEEEEETTEE--EEEEEEC----------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTT
T ss_pred             EcCCCcEEEEEECCCCC--cEEEEEC----------CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCC
Confidence            45677899999999743  7999998          7999999999862        11233344789999999999999


Q ss_pred             CCCCCC-eEEEEcCCccE-EEecCCCc-------------ccCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccc-ee
Q 020107           78 GGNAGP-FLAQADADGGL-LRDITGEK-------------ISSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQ-LE  140 (331)
Q Consensus        78 ~~~~~~-~l~~~~~dg~i-iw~~~~~~-------------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~  140 (331)
                          +. +|++++.||.+ +|++....             .|...|.+++|+| ++..|++++.||.|++||++++. ..
T Consensus       193 ----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~  268 (430)
T 2xyi_A          193 ----LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK  268 (430)
T ss_dssp             ----STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred             ----CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence                66 99999999999 99998721             2677899999999 67788999999999999999752 23


Q ss_pred             eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCe
Q 020107          141 VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY  219 (331)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  219 (331)
                      ++..+..|...|++++|+|....++++|+.||.|++||+++. .....+..   |...|.+++|+|....+|++++.|+.
T Consensus       269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~---h~~~v~~i~~sp~~~~~l~s~~~d~~  345 (430)
T 2xyi_A          269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRR  345 (430)
T ss_dssp             CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec---CCCCEEEEEECCCCCCEEEEEeCCCc
Confidence            466677899999999999965568999999999999999984 44555655   99999999999933367999999999


Q ss_pred             EEEEEecCCCC------------CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          220 LRVWDVRSISK------------PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       220 i~iwd~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      |++||++....            .+......|...|++++|+|+++.++++++.++.+++|++..
T Consensus       346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            99999987332            222334578889999999999855788888888899999865

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-35  Score=251.49  Aligned_cols=256  Identities=12%  Similarity=0.117  Sum_probs=198.3

Q ss_pred             EeccCcccceEEeEeeecCcEeEEEEcC-CCCCCCCeEEEEcCCccE-EEecCC---Cc--------ccCccEEEEEEcC
Q 020107           49 FNVNAEEKNLELLYRMDTAGIFDIKWSP-VGGNAGPFLAQADADGGL-LRDITG---EK--------ISSSMCLCLEWNP  115 (331)
Q Consensus        49 w~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~~~~---~~--------~~~~~v~~~~~~~  115 (331)
                      |+....  .+..+..+|.+.|++++|+| +    +++|++|+.||.+ +|++.+   ..        .|...|.+++|+|
T Consensus        48 w~~~g~--~~~~~~~~h~~~V~~~~~s~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  121 (437)
T 3gre_A           48 GNLRGK--LIATLMENEPNSITSSAVSPGE----TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP  121 (437)
T ss_dssp             GGCCCC--EEEEECTTTTSCEEEEEEECSS----SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT
T ss_pred             ccccce--EEeeeccCCCCceEEEEECCCC----CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC
Confidence            764443  35555578999999999999 8    8899999999999 999876   22        2678999999999


Q ss_pred             CCCeEEEEecCCeEEEEEcc---ccceeeeeeeec------------ccceeEEEe--eCCCCCcEEEEEcCCCeEEEEE
Q 020107          116 SATSITVGLSDGSVSIVSVV---ESQLEVLQQWKA------------HEFELWATS--FDVHQPHMVYTGSDDCKFSGWD  178 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~~~~~dg~i~i~d  178 (331)
                      +++.|++++.||.|++||++   .++.  ...+..            +...+.++.  ++| ++.++++++.|+.|++||
T Consensus       122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd  198 (437)
T 3gre_A          122 NFDAFAVSSKDGQIIVLKVNHYQQESE--VKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFD  198 (437)
T ss_dssp             TSSEEEEEETTSEEEEEEEEEEEETTE--EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEEeccccCCce--eeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEe
Confidence            99999999999999999995   3332  222221            334455555  445 678999999999999999


Q ss_pred             ccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC--CC-e
Q 020107          179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI--PG-L  255 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~-~  255 (331)
                      +++++....+.. ..|...|++++|+| ++.+|++|+.||.|++||+++. +++..+...|..+|.+++|+|..  ++ .
T Consensus       199 ~~~~~~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~  275 (437)
T 3gre_A          199 IRTLERLQIIEN-SPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVI  275 (437)
T ss_dssp             TTTCCEEEEEEC-CGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEE
T ss_pred             CCCCeeeEEEcc-CCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCccE
Confidence            999887777765 23788999999999 8999999999999999999984 55555334778899999777641  14 5


Q ss_pred             EEEEEecCcEEEEEEcCcccceeEEeec--------------------------CCcceeeeeecCCCCcccccccCcEE
Q 020107          256 VLAACMHNGFAVVKVGGEKAEVLETYAK--------------------------HGSLAYGADWQRGRSSLEGKRKNSLV  309 (331)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------h~~~v~~~~~~~~~~~~~~~~~~~~l  309 (331)
                      +++++.++.+++|++..  ++.+..+.+                          |...|++++|+ ++         ++|
T Consensus       276 l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~---------~~l  343 (437)
T 3gre_A          276 VVGGSSKTFLTIWNFVK--GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND---------KIL  343 (437)
T ss_dssp             EEEESTTEEEEEEETTT--TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT---------EEE
T ss_pred             EEEEcCCCcEEEEEcCC--CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc---------eEE
Confidence            55555666689999876  455666654                          44556666777 43         699


Q ss_pred             EEeecCCCeEEEEcCCCccc
Q 020107          310 ATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       310 ~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ++++ .|+.|++||+.++..
T Consensus       344 ~s~~-~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          344 LTDE-ATSSIVMFSLNELSS  362 (437)
T ss_dssp             EEEG-GGTEEEEEETTCGGG
T ss_pred             EecC-CCCeEEEEECCCccc
Confidence            9999 999999999988754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.9e-33  Score=232.95  Aligned_cols=256  Identities=15%  Similarity=0.165  Sum_probs=198.7

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--eEEeEeeecCcEeEEEEcC--CCCCCCC
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--LELLYRMDTAGIFDIKWSP--VGGNAGP   83 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~~~~   83 (331)
                      +...+.+++|+|.+   ++||+|+          .||.|++|++......  ....+.+|...|++++|+|  +    +.
T Consensus        10 H~~~v~~~~~~~~~---~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d----~~   72 (351)
T 3f3f_A           10 HDDLVHDVVYDFYG---RHVATCS----------SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEY----GR   72 (351)
T ss_dssp             CSSCEEEEEECSSS---SEEEEEE----------TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGG----CS
T ss_pred             cccceeEEEEcCCC---CEEEEee----------CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCC----CC
Confidence            34556777777655   8999998          7999999999875422  3344567999999999999  5    78


Q ss_pred             eEEEEcCCccE-EEecCCCc---------------ccCccEEEEEEcCC--CCeEEEEecCCeEEEEEccccceeeeee-
Q 020107           84 FLAQADADGGL-LRDITGEK---------------ISSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQ-  144 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~~~~---------------~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  144 (331)
                      +|++++.||.+ +|++...+               .|...|.+++|+|+  +++|++++.||.|++||+++++...... 
T Consensus        73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  152 (351)
T 3f3f_A           73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL  152 (351)
T ss_dssp             EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE
T ss_pred             EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc
Confidence            99999999999 99998752               25788999999999  9999999999999999998764311111 


Q ss_pred             ----------eecccceeEEEeeCCC--CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC----
Q 020107          145 ----------WKAHEFELWATSFDVH--QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS----  208 (331)
Q Consensus       145 ----------~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----  208 (331)
                                ...|...+.+++|+|.  ++..+++++.++.+.+|+...++...... ...|...|++++|+| ++    
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~~p-~~~~~~  230 (351)
T 3f3f_A          153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK-LPGHKSLIRSISWAP-SIGRWY  230 (351)
T ss_dssp             EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE-CCCCCSCEEEEEECC-CSSCSS
T ss_pred             cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee-cCCCCcceeEEEECC-CCCCcc
Confidence                      1257788999999984  38899999999999888877765422222 345999999999999 76    


Q ss_pred             CEEEEEecCCeEEEEEecCCCC--------------------------------------------CceeeeeecCCceE
Q 020107          209 NTLLTGSYDEYLRVWDVRSISK--------------------------------------------PVNETSVCLGGGVW  244 (331)
Q Consensus       209 ~~l~~~~~d~~i~iwd~~~~~~--------------------------------------------~~~~~~~~~~~~v~  244 (331)
                      ++|++++.|+.|++||++....                                            .....+..|...|+
T Consensus       231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  310 (351)
T 3f3f_A          231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW  310 (351)
T ss_dssp             EEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE
T ss_pred             eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE
Confidence            8999999999999999987421                                            11122456889999


Q ss_pred             EEEECCCCCCeEEEEEecCcEEEEEEcCcc-cceeEEeec
Q 020107          245 RIKHHPFIPGLVLAACMHNGFAVVKVGGEK-AEVLETYAK  283 (331)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  283 (331)
                      +++|+|++ .++++++.++.+++|++.... .+.+..+..
T Consensus       311 ~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~  349 (351)
T 3f3f_A          311 SVSWNLTG-TILSSAGDDGKVRLWKATYSNEFKCMSVITA  349 (351)
T ss_dssp             EEEECSSS-CCEEEEETTSCEEEEEECTTSCEEEEEEEC-
T ss_pred             EEEEcCCC-CEEEEecCCCcEEEEecCcCcchhheeehcc
Confidence            99999997 678888888899999998642 334444443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.1e-34  Score=248.22  Aligned_cols=244  Identities=17%  Similarity=0.221  Sum_probs=192.0

Q ss_pred             eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----------------ccC------------ccEEEEEE
Q 020107           64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----------------ISS------------SMCLCLEW  113 (331)
Q Consensus        64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----------------~~~------------~~v~~~~~  113 (331)
                      .+.+.|++++|+|+    +++|++|+.||.+ +|++.+.+                 .|.            ..|.+++|
T Consensus        26 ~~~~~V~~v~~s~~----g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           26 AEADIISTVEFNHS----GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW  101 (447)
T ss_dssp             CGGGSEEEEEECSS----SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred             cccCcEEEEEECCC----CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence            36788999999999    9999999999999 99988654                 144            77999999


Q ss_pred             cCCC--CeEEEEecCCeEEEEEcccccee-------------------------------------eeee-eecccceeE
Q 020107          114 NPSA--TSITVGLSDGSVSIVSVVESQLE-------------------------------------VLQQ-WKAHEFELW  153 (331)
Q Consensus       114 ~~~~--~~l~~~~~dg~i~i~d~~~~~~~-------------------------------------~~~~-~~~~~~~v~  153 (331)
                      +|++  ..|++++.|+.|++||+.+++..                                     +... ..+|...|.
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            9998  78999999999999999864321                                     1112 357999999


Q ss_pred             EEeeCCCCCcEEEEEcCCCeEEEEEccCC-Cceeeee----cccCCCcceEEEEEecCCC-CEEEEEecCCeEEEEEecC
Q 020107          154 ATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQ----NSKIHKMGVCCIASIPSDS-NTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~----~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~  227 (331)
                      +++|+| ++++|+++ .|+.|++||+++. +....+.    ....|...|++++|+| ++ .+|++++.|+.|++||+++
T Consensus       182 ~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~  258 (447)
T 3dw8_B          182 SISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRA  258 (447)
T ss_dssp             EEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTT
T ss_pred             EEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcC
Confidence            999999 78899998 7999999999843 3232210    1234899999999999 76 9999999999999999998


Q ss_pred             CCCC---ceeeeeecCC------------ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcc-----
Q 020107          228 ISKP---VNETSVCLGG------------GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL-----  287 (331)
Q Consensus       228 ~~~~---~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----  287 (331)
                      ....   +.. +..|..            .|.+++|+|++ .++++++. +.+++|++... ++.+..+.+|...     
T Consensus       259 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~-~~~~~~~~~~~~~~~~l~  334 (447)
T 3dw8_B          259 SALCDRHSKL-FEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNME-NRPVETYQVHEYLRSKLC  334 (447)
T ss_dssp             CSSSCTTCEE-ECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCC-SSCSCCEESCGGGTTTHH
T ss_pred             CccccceeeE-eccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCC-ccccceeecccccccccc
Confidence            6431   232 355554            89999999985 55555555 88999998763 5677778887642     


Q ss_pred             ----------eeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          288 ----------AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       288 ----------v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                                +..++|+|++         ++|++++ .||.|++||+.++.
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~---------~~l~s~s-~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSD---------SVVMTGS-YNNFFRMFDRNTKR  375 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTS---------SEEEEEC-STTEEEEEETTTCC
T ss_pred             ccccccccccceEEEECCCC---------CEEEEec-cCCEEEEEEcCCCc
Confidence                      2348999998         6999999 99999999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-33  Score=239.74  Aligned_cols=236  Identities=16%  Similarity=0.182  Sum_probs=198.8

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ...+.+++|+|.+   ++|++|+          .+|.|++||+.+.+  ......+|...|.+++|++.      .|+++
T Consensus       134 ~~~v~~v~~s~~~---~~l~~~~----------~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~------~l~~~  192 (401)
T 4aez_A          134 STYVASVKWSHDG---SFLSVGL----------GNGLVDIYDVESQT--KLRTMAGHQARVGCLSWNRH------VLSSG  192 (401)
T ss_dssp             TCCEEEEEECTTS---SEEEEEE----------TTSCEEEEETTTCC--EEEEECCCSSCEEEEEEETT------EEEEE
T ss_pred             CCCEEEEEECCCC---CEEEEEC----------CCCeEEEEECcCCe--EEEEecCCCCceEEEEECCC------EEEEE
Confidence            5678899999866   8999998          79999999998875  33444689999999999554      99999


Q ss_pred             cCCccE-EEecCCCc-------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107           89 DADGGL-LRDITGEK-------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      +.||.+ +|++....       .|...|.+++|+|+++.|++|+.||.|++||+++++.  +..+..|...|.+++|+|.
T Consensus       193 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~  270 (401)
T 4aez_A          193 SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP--KFTKTNHNAAVKAVAWCPW  270 (401)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE--EEEECCCSSCCCEEEECTT
T ss_pred             cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc--cEEecCCcceEEEEEECCC
Confidence            999999 99998432       2688999999999999999999999999999998654  6677889999999999996


Q ss_pred             CCcEEEEEc--CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE--EecCCeEEEEEecCCCCCceeee
Q 020107          161 QPHMVYTGS--DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT--GSYDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       161 ~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~  236 (331)
                      +..++++++  .|+.|++||+++++....+.    +...|.+++|+| ++.++++  |+.|+.|++||+++........+
T Consensus       271 ~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~  345 (401)
T 4aez_A          271 QSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI  345 (401)
T ss_dssp             STTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeEEEe
Confidence            677888866  79999999999988776665    577899999999 8999988  44899999999998533233224


Q ss_pred             eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      ..|...|.+++|+|++ ..+++++.++.+++|++...
T Consensus       346 ~~h~~~v~~~~~s~dg-~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          346 PAHDTRVLYSALSPDG-RILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             ECCSSCCCEEEECTTS-SEEEEECTTSEEEEEECCC-
T ss_pred             cCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCC
Confidence            6899999999999997 67777888888999999874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=230.45  Aligned_cols=241  Identities=20%  Similarity=0.251  Sum_probs=204.1

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      +...+.+|...|++++| |+    +.+|++++.||.+ +|++.+...      |...|.+++|+|+++.|++++.||.|+
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VD----DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EE----TTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             HHHHhhCCCCCcEEEEe-cC----CCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            44556889999999999 88    8899999999999 999987653      688999999999999999999999999


Q ss_pred             EEEccccc-eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107          131 IVSVVESQ-LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN  209 (331)
Q Consensus       131 i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  209 (331)
                      +|++.... ...+..+..|...|.+++|+   ++++++++.|+.|++||  .++....+..   |...+.++.|.|.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~---~~~~v~~~~~~~~~~~  156 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQA---HNASVWDAKVVSFSEN  156 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEEC---CSSCEEEEEEEETTTT
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEeccc---CCCceeEEEEccCCCC
Confidence            99987642 23466778899999999994   47899999999999999  4444555555   9999999999987889


Q ss_pred             EEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCccee
Q 020107          210 TLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAY  289 (331)
Q Consensus       210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  289 (331)
                      ++++++.|+.|++||..   .........|...+.+++|+|++  .+++++.++.+++|++..  ++.+..+.+|...|+
T Consensus       157 ~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~  229 (313)
T 3odt_A          157 KFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDG--HFISCSNDGLIKLVDMHT--GDVLRTYEGHESFVY  229 (313)
T ss_dssp             EEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETT--EEEEEETTSEEEEEETTT--CCEEEEEECCSSCEE
T ss_pred             EEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCC--eEEEccCCCeEEEEECCc--hhhhhhhhcCCceEE
Confidence            99999999999999943   33444223489999999999995  488888888999999876  578888999999999


Q ss_pred             eeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +++|+|++          .|++++ .||.|++||+.++..
T Consensus       230 ~~~~~~~~----------~l~~~~-~dg~v~iwd~~~~~~  258 (313)
T 3odt_A          230 CIKLLPNG----------DIVSCG-EDRTVRIWSKENGSL  258 (313)
T ss_dssp             EEEECTTS----------CEEEEE-TTSEEEEECTTTCCE
T ss_pred             EEEEecCC----------CEEEEe-cCCEEEEEECCCCce
Confidence            99999997          588888 899999999988753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-32  Score=230.77  Aligned_cols=246  Identities=11%  Similarity=0.112  Sum_probs=206.1

Q ss_pred             EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107           59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSI  131 (331)
Q Consensus        59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i  131 (331)
                      ...+.+|...|++++|+|+    +++|++++.||.+ +|++.+.+.      |...|.+++|+|++++|++++.||.|++
T Consensus        25 ~~~l~~h~~~v~~~~~s~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKE----GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             EEEEECCSSCEEEEEECTT----SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             cEEEEEeeceEEEEEEcCC----CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            3445789999999999999    8999999999999 999987654      6889999999999999999999999999


Q ss_pred             EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-----CeEEEEEccCCCceeeeec--------ccCCCc--
Q 020107          132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-----CKFSGWDIRESPFKLAFQN--------SKIHKM--  196 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~--------~~~~~~--  196 (331)
                      ||+.+++.  +..+. +...+.+++|+| ++.++++++.+     +.|++||++.......+..        ...|..  
T Consensus       101 wd~~~~~~--~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (369)
T 3zwl_B          101 WDVSNGQC--VATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD  176 (369)
T ss_dssp             EETTTCCE--EEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred             EECCCCcE--EEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence            99998754  55555 788999999999 78899999988     9999999987654222211        112444  


Q ss_pred             ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc
Q 020107          197 GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE  276 (331)
Q Consensus       197 ~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (331)
                      .+.+++|+| ++++|++++.|+.|++||+++...++.. +..|...|.+++|+|++ ..+++++.++.+++|++..  ++
T Consensus       177 ~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~--~~  251 (369)
T 3zwl_B          177 AATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDS-IDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVST--LQ  251 (369)
T ss_dssp             CEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEE-EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT--CC
T ss_pred             ceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEE-EecCCCceeEEEECCCC-CEEEEecCCceEEEEECCC--Cc
Confidence            899999999 9999999999999999999984344443 57799999999999986 6777777888899999876  46


Q ss_pred             eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC--------------eEEEEcCCCcc
Q 020107          277 VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR--------------LLRIWMPESDC  328 (331)
Q Consensus       277 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~--------------~i~iW~~~~~~  328 (331)
                      .+..+. +...+..++|+|++         +++++++ .++              .+++||+.++.
T Consensus       252 ~~~~~~-~~~~~~~~~~~~~~---------~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~  306 (369)
T 3zwl_B          252 VLKKYE-TDCPLNTAVITPLK---------EFIILGG-GQEAKDVTTTSANEGKFEARFYHKIFEE  306 (369)
T ss_dssp             EEEEEE-CSSCEEEEEECSSS---------SEEEEEE-CCC-------------CEEEEEETTTCC
T ss_pred             eeeeec-CCCCceeEEecCCC---------ceEEEee-cCCCceEEEEecCCCcceeEEEecCCCc
Confidence            666666 67889999999999         6888888 787              89999987764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.9e-34  Score=243.42  Aligned_cols=293  Identities=13%  Similarity=0.084  Sum_probs=204.8

Q ss_pred             eeeeecCcceeEeeecCCCCC-cEEEEEeecccCCCCCCCCCcEEEEeccCccc------ceEEeE-eeecCcEeEEEEc
Q 020107            4 AHCELDGNADAVEFCPQDSYH-HVLAASTYTLQEGDKPSRNGSISLFNVNAEEK------NLELLY-RMDTAGIFDIKWS   75 (331)
Q Consensus         4 ~~~~~~~~~~~v~~~~~~~~~-~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~------~~~~~~-~~~~~~v~~~~~~   75 (331)
                      ..+.++..+.++.|+...+.. +++++|.           ++.|.+|+......      ...... ..+...+..+.|+
T Consensus        10 ~~lpl~~~p~~~~w~~~~~~~~~l~a~g~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (393)
T 4gq1_A           10 YQLPLNVRPYTTTWCSQSPSCSNLLAIGH-----------DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFS   78 (393)
T ss_dssp             EECCTTCCEEEEEECTTSGGGTTEEEEEE-----------SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEEC
T ss_pred             eEecCCCCCeEEEEeCCCCCCCCEEEEEC-----------CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeec
Confidence            456678889999998766544 5777776           88999998754321      111111 1234456666665


Q ss_pred             CCCC----------------CCCCeEEEEcCCccE-EEecCCCc-----------ccCccEEEEEEcC--------CCCe
Q 020107           76 PVGG----------------NAGPFLAQADADGGL-LRDITGEK-----------ISSSMCLCLEWNP--------SATS  119 (331)
Q Consensus        76 ~~~~----------------~~~~~l~~~~~dg~i-iw~~~~~~-----------~~~~~v~~~~~~~--------~~~~  119 (331)
                      +...                ..+.+|++++.|+++ +|+....+           .|...|.+++|+|        ++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~  158 (393)
T 4gq1_A           79 SSCSYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV  158 (393)
T ss_dssp             TTCEEECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred             CCccccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCE
Confidence            4210                004579999999999 99987653           3788999999998        7889


Q ss_pred             EEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee----------
Q 020107          120 ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ----------  189 (331)
Q Consensus       120 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------  189 (331)
                      |++|+.|++|++||++++..  +..+..|...+.+++|+|.+.++|++++.|+.|++||+++++......          
T Consensus       159 las~s~D~tv~~Wd~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~  236 (393)
T 4gq1_A          159 IASVGDDCTLIIWRLTDEGP--ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL  236 (393)
T ss_dssp             EEEEETTSEEEEEEEETTEE--EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred             EEEEECCCeEEEEECCCCce--eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence            99999999999999987643  556667888999999999656789999999999999999875432211          


Q ss_pred             ------------cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCce--------------
Q 020107          190 ------------NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV--------------  243 (331)
Q Consensus       190 ------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v--------------  243 (331)
                                  ...+|...+.++.|.+.++..|++++.|+++++||+..... ... +..|...+              
T Consensus       237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~-l~~~~~~~~~~~~~~~~~~~~~  314 (393)
T 4gq1_A          237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-YNE-ISDSTMKLGPKNLLPNVQGISL  314 (393)
T ss_dssp             EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECS
T ss_pred             EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-Cce-EeeecCccccEEEccccccccc
Confidence                        01247788999999844999999999999999999987432 111 12333222              


Q ss_pred             ----EEEEECCCCCCeEEEEEe-cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107          244 ----WRIKHHPFIPGLVLAACM-HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL  318 (331)
Q Consensus       244 ----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~  318 (331)
                          ....|+|...+.++++++ ++.+++|++..  ++....+.+|...|.+++|+|++         ++||+++ .| .
T Consensus       315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~--~~~~~~~~~~~~~V~svafspdG---------~~LA~as-~~-G  381 (393)
T 4gq1_A          315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE--KDSNSIPIQLGMPIVDFCWHQDG---------SHLAIAT-EG-S  381 (393)
T ss_dssp             SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC--TTCCEEEEECSSCEEEEEECTTS---------SEEEEEE-SS-E
T ss_pred             cCcceeEEEccCCCCEEEEEECCCCEEEEEECCC--CcEEEEecCCCCcEEEEEEcCCC---------CEEEEEe-CC-C
Confidence                233455544466666665 66788888776  46667777889999999999999         7999998 55 5


Q ss_pred             EEEEcC
Q 020107          319 LRIWMP  324 (331)
Q Consensus       319 i~iW~~  324 (331)
                      +.+|++
T Consensus       382 v~lvrL  387 (393)
T 4gq1_A          382 VLLTRL  387 (393)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            666654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-34  Score=259.80  Aligned_cols=248  Identities=18%  Similarity=0.194  Sum_probs=201.4

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +.+.+.+++|+|.+   ++|++|+          .||.|++|++............+|...|++++|+|+..  +.+|++
T Consensus         8 H~~~V~~l~~s~dg---~~latg~----------~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~--~~~l~s   72 (753)
T 3jro_A            8 HNELIHDAVLDYYG---KRLATCS----------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF--GTILAS   72 (753)
T ss_dssp             CCCCEEEECCCSSS---CCEEEEE----------TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTS--CSEEEE
T ss_pred             CcceeEEEEECCCC---CeEEEEE----------CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCC--CCEEEE
Confidence            34456666666654   8999998          79999999998544345555678999999999997622  569999


Q ss_pred             EcCCccE-EEecCCCc--------ccCccEEEEEEcCC--CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107           88 ADADGGL-LRDITGEK--------ISSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  156 (331)
                      |+.||.+ +|++.+.+        .|...|.+++|+|+  ++.+++|+.||.|++||++++.......+.+|...|.+++
T Consensus        73 ~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~  152 (753)
T 3jro_A           73 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  152 (753)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred             EeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence            9999999 99998864        26789999999999  9999999999999999999875545667788999999999


Q ss_pred             eCCC------------CCcEEEEEcCCCeEEEEEccCCCcee-eeecccCCCcceEEEEEecCC---CCEEEEEecCCeE
Q 020107          157 FDVH------------QPHMVYTGSDDCKFSGWDIRESPFKL-AFQNSKIHKMGVCCIASIPSD---SNTLLTGSYDEYL  220 (331)
Q Consensus       157 ~~~~------------~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i  220 (331)
                      |+|.            ++..+++|+.||.|++||++++.... ......+|...|++++|+| +   +.+|++++.||.|
T Consensus       153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~~~l~s~s~Dg~I  231 (753)
T 3jro_A          153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYLASVSQDRTC  231 (753)
T ss_dssp             ECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEESSSCE
T ss_pred             ecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc-CCCCCCEEEEEecCCEE
Confidence            9984            47899999999999999999875421 2222244999999999999 7   8999999999999


Q ss_pred             EEEEecCCCCCce---eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          221 RVWDVRSISKPVN---ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       221 ~iwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      ++||+++...+..   .....|...|++++|+|++ ..+++++.++.+++|++..
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCBCCS
T ss_pred             EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEecCC
Confidence            9999998532211   1124588899999999997 6777888888999999873

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1e-31  Score=225.43  Aligned_cols=271  Identities=12%  Similarity=0.050  Sum_probs=199.7

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE-E
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL-A   86 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~   86 (331)
                      ....+.+|+|+|++   ++||+|+           +..+++|++....    .....+...+..+++.++    ...+ +
T Consensus        18 h~~~V~~v~fs~dg---~~la~g~-----------~~~~~iw~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~   75 (355)
T 3vu4_A           18 VSNPVTDYEFNQDQ---SCLILST-----------LKSFEIYNVHPVA----HIMSQEMRHLSKVRMLHR----TNYVAF   75 (355)
T ss_dssp             -CCCCCEEEECTTS---SEEEEEC-----------SSEEEEEEETTEE----EEEEEECSCCCEEEECTT----SSEEEE
T ss_pred             CCCceEEEEECCCC---CEEEEEc-----------CCEEEEEecCCcc----eeeeeecCCeEEEEEcCC----CCEEEE
Confidence            45678889998877   8999997           4568999988654    222334446888899988    5666 5


Q ss_pred             EEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc-ceeeeeeeecccceeEEEeeCC
Q 020107           87 QADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES-QLEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~  159 (331)
                      +++.|+.+ +|++.+++.     +...|.+++|+++.  ++++ .++.|++||+.++ +.  +..+..   +...+++++
T Consensus        76 ~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~--~~~~~~---~~~~~~~s~  147 (355)
T 3vu4_A           76 VTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKR--ITDDIR---FGGVCEFSN  147 (355)
T ss_dssp             ECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCB--SSCCEE---EEEEEEEET
T ss_pred             EECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCcee--eEEecc---CCceEEEEc
Confidence            67788888 999987654     46789999998753  4443 4789999999876 32  444443   344556665


Q ss_pred             CCCcEEEE--EcCCCeEEEEEccCCC----------------ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCe-E
Q 020107          160 HQPHMVYT--GSDDCKFSGWDIRESP----------------FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY-L  220 (331)
Q Consensus       160 ~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i  220 (331)
                         .+++.  |+.+|.|++||++++.                ....+.   +|...|++++|+| ++.+|++++.|++ |
T Consensus       148 ---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~-~g~~l~s~s~d~~~v  220 (355)
T 3vu4_A          148 ---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNR-KSDMVATCSQDGTII  220 (355)
T ss_dssp             ---TEEEEEESSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECT-TSSEEEEEETTCSEE
T ss_pred             ---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECC-CCCEEEEEeCCCCEE
Confidence               44554  6899999999999764                133344   4999999999999 9999999999998 9


Q ss_pred             EEEEecCCCCCceeeeee-cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-----------------
Q 020107          221 RVWDVRSISKPVNETSVC-LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-----------------  282 (331)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  282 (331)
                      ++||++++ +++..+..+ |...|++++|+|++ ..+++++.++.+++|++..........+.                 
T Consensus       221 ~iwd~~~~-~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (355)
T 3vu4_A          221 RVFKTEDG-VLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF  298 (355)
T ss_dssp             EEEETTTC-CEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred             EEEECCCC-cEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence            99999985 555552224 99999999999997 67778888889999999764322222211                 


Q ss_pred             ----cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          283 ----KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       283 ----~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                          .+......++|++++         ++|++++ .||.+++|++..+
T Consensus       299 ~~~~~~~~~~~~~a~~~d~---------~~l~~~~-~dg~~~~~~~~~~  337 (355)
T 3vu4_A          299 KLSVDKHVRGCKIAWISES---------SLVVVWP-HTRMIETFKVVFD  337 (355)
T ss_dssp             ECCCCTTCCCCEEEESSSS---------EEEEEET-TTTEEEEEEEEEE
T ss_pred             EeccCCCCCceEEEEeCCC---------CEEEEEe-CCCeEEEEEEEcC
Confidence                112234678999998         7999999 8999999998654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1e-31  Score=230.73  Aligned_cols=234  Identities=18%  Similarity=0.263  Sum_probs=196.6

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+.+|+|+|.+   ++||+|+          .||.|+|||+.+.+  ......+|...+.++.|++.      +|++|+.
T Consensus       149 ~V~sv~fspdg---~~lasgs----------~Dg~v~iWd~~~~~--~~~~~~~h~~~v~~~s~~~~------~l~sgs~  207 (420)
T 4gga_A          149 YISSVAWIKEG---NYLAVGT----------SSAEVQLWDVQQQK--RLRNMTSHSARVGSLSWNSY------ILSSGSR  207 (420)
T ss_dssp             CEEEEEECTTS---SEEEEEE----------TTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETT------EEEEEET
T ss_pred             cEEEEEECCCC---CEEEEEE----------CCCeEEEEEcCCCc--EEEEEeCCCCceEEEeeCCC------EEEEEeC
Confidence            47888888876   8999999          79999999999876  44445789999999988765      9999999


Q ss_pred             CccE-EEecCCCc-------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce--eeeeeeecccceeEEEeeCCC
Q 020107           91 DGGL-LRDITGEK-------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL--EVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        91 dg~i-iw~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      |+.+ +|+.....       .|...+..+.|+|+++.+++++.|+.+++|+...++.  ..+.....|...|.+++|+|.
T Consensus       208 d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~  287 (420)
T 4gga_A          208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW  287 (420)
T ss_dssp             TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTT
T ss_pred             CCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCC
Confidence            9999 99877643       3678899999999999999999999999999987542  234566778999999999997


Q ss_pred             CCcEEEEE--cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe--cCCeEEEEEecCCCCCceeee
Q 020107          161 QPHMVYTG--SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS--YDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       161 ~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~  236 (331)
                      +..+++++  +.|+.|++||+++++....+..    ...+.++.|+| ++..+++++  .|+.|++||++++ +++.. +
T Consensus       288 ~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~-l  360 (420)
T 4gga_A          288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDA----HSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTM-AKVAE-L  360 (420)
T ss_dssp             CTTEEEEEECTTTCEEEEEETTTTEEEEEEEC----SSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTC-CEEEE-E
T ss_pred             cccEEEEEeecCCCEEEEEeCCccccceeecc----ccceeeeeecC-CCCeEEEEEecCCCEEEEEECCCC-cEEEE-E
Confidence            77777764  5799999999999987766664    56789999999 777777654  7999999999986 45554 5


Q ss_pred             eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      .+|.+.|++++|+|++ ..+++++.|+.+++|++.+.
T Consensus       361 ~gH~~~V~~l~~spdg-~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          361 KGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             CCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCS
T ss_pred             cCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCC
Confidence            7899999999999997 67888888889999999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-32  Score=234.60  Aligned_cols=242  Identities=15%  Similarity=0.133  Sum_probs=192.7

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC----------cccCccEEEEEEcC-CCCeEEEEecCCeEEEEEcc
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE----------KISSSMCLCLEWNP-SATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~----------~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~  135 (331)
                      ....++++|+.   ..++++++.||.+ +|++...          ..|...|.+++|+| ++++|++|+.||.|++||+.
T Consensus        36 ~~~~~~~~~~~---~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           36 DSGFCAVNPKF---MALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             SSCSEEECSSE---EEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred             CCCcEEECCCe---EEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence            34568889882   2244457889999 9998542          12788999999999 89999999999999999998


Q ss_pred             ccce-----eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107          136 ESQL-----EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       136 ~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                      ++..     .++..+.+|...|.+++|+|.+.++|++++.|+.|++||+++++....+.. ..|...|.+++|+| ++.+
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~  190 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-DVHPDTIYSVDWSR-DGAL  190 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-TTCCSCEEEEEECT-TSSC
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-CCCCCceEEEEECC-CCCE
Confidence            8643     346778899999999999994457999999999999999999877766621 23899999999999 9999


Q ss_pred             EEEEecCCeEEEEEecCCCCCceeeeeecCCc-eEEEEECCCCCCeEEEEE----ecCcEEEEEEcCcccceeEEe-ecC
Q 020107          211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGG-VWRIKHHPFIPGLVLAAC----MHNGFAVVKVGGEKAEVLETY-AKH  284 (331)
Q Consensus       211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~h  284 (331)
                      |++++.|+.|++||+++. +.+......|.+. +.++.|+|+  +.+++++    .++.+++|++..... .+... ..|
T Consensus       191 l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~~~~d~~i~iwd~~~~~~-~~~~~~~~~  266 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSE--GKILTTGFSRMSERQVALWDTKHLEE-PLSLQELDT  266 (402)
T ss_dssp             EEEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECST--TEEEEEEECTTCCEEEEEEETTBCSS-CSEEEECCC
T ss_pred             EEEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCC--CcEEEEeccCCCCceEEEEcCccccC-CceEEeccC
Confidence            999999999999999985 4555422567665 899999998  4455554    678888999877522 23333 357


Q ss_pred             CcceeeeeecCCCCcccccccCcEEE-EeecCCCeEEEEcCCCcc
Q 020107          285 GSLAYGADWQRGRSSLEGKRKNSLVA-TCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       285 ~~~v~~~~~~~~~~~~~~~~~~~~l~-s~~~~d~~i~iW~~~~~~  328 (331)
                      ...+..++|+|++         ++|+ +++ .|+.|++|++.++.
T Consensus       267 ~~~v~~~~~s~~~---------~~l~~~g~-~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          267 SSGVLLPFFDPDT---------NIVYLCGK-GDSSIRYFEITSEA  301 (402)
T ss_dssp             CSSCEEEEEETTT---------TEEEEEET-TCSCEEEEEECSST
T ss_pred             CCceeEEEEcCCC---------CEEEEEEc-CCCeEEEEEecCCC
Confidence            7889999999998         4665 565 79999999998765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-32  Score=225.03  Aligned_cols=258  Identities=9%  Similarity=-0.004  Sum_probs=191.6

Q ss_pred             CCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecC--
Q 020107           23 YHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDIT--   99 (331)
Q Consensus        23 ~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~--   99 (331)
                      ++.+|++|+          .||.|++||+.+++ .+..+.   ...|.++.|+|.       +++++.|+.+ +|+..  
T Consensus        47 d~~~l~sg~----------~Dg~v~iwd~~~~~-~~~~~~---~~~v~~~~~~~~-------~~s~s~D~~i~~w~~~~~  105 (343)
T 3lrv_A           47 DKWVCMCRC----------EDGALHFTQLKDSK-TITTIT---TPNPRTGGEHPA-------IISRGPCNRLLLLYPGNQ  105 (343)
T ss_dssp             EEEEEEEEE----------ETTEEEEEEESSSS-CEEEEE---EECCCTTCCCCS-------EEEECSTTEEEEEETTTE
T ss_pred             CCCEEEEEC----------CCCcEEEEECCCCc-EEEEEe---cCCceeeeeCCc-------eEEecCCCeEEEEEccCc
Confidence            447899998          79999999999876 333332   456888888765       8999999999 77554  


Q ss_pred             -------CCc-------ccCccEEEEEEcC--CCCeEEEEecCCeEEEEEccccceeeeeee-ecccceeEEEeeCCCCC
Q 020107          100 -------GEK-------ISSSMCLCLEWNP--SATSITVGLSDGSVSIVSVVESQLEVLQQW-KAHEFELWATSFDVHQP  162 (331)
Q Consensus       100 -------~~~-------~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~  162 (331)
                             +.+       .|...|.+++|+|  +++++++++.||.|++||+++++.  +... ..+...+++++|+| ++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~~i~~~~~~p-dg  182 (343)
T 3lrv_A          106 ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--YIVHSAKSDVEYSSGVLHK-DS  182 (343)
T ss_dssp             EEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--EEEECCCSSCCCCEEEECT-TS
T ss_pred             eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--EEEEecCCCCceEEEEECC-CC
Confidence                   333       1347799999999  999999999999999999998765  3333 33556799999999 88


Q ss_pred             cEEEEEcCCCeEEEEEccCCCce-eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee-eeeecC
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFK-LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE-TSVCLG  240 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~  240 (331)
                      .+|++|+.||.|++||+++++.. ..+..  .|...|++++|+| ++.+|++++ |+.|++||+++.+..... .+..|.
T Consensus       183 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~  258 (343)
T 3lrv_A          183 LLLALYSPDGILDVYNLSSPDQASSRFPV--DEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPE  258 (343)
T ss_dssp             CEEEEECTTSCEEEEESSCTTSCCEECCC--CTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC--
T ss_pred             CEEEEEcCCCEEEEEECCCCCCCccEEec--cCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeeccccccc
Confidence            99999999999999999998765 34432  3899999999999 999999999 559999999986432211 011133


Q ss_pred             Cce--EEEEECCCCCCeEEEEEe-cCcEEEEEEcCcccceeEEeecCCcceeeeeecC---CCCcccccccCcEEEEeec
Q 020107          241 GGV--WRIKHHPFIPGLVLAACM-HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR---GRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       241 ~~v--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~~~~~~~~l~s~~~  314 (331)
                      ..+  .+++|+|++ .++++++. ++.+++|++.... +... .    .++..+.|.+   +.         ..+++++ 
T Consensus       259 ~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~-~~~~-~----~~~~~~~~~~~~~~~---------~~l~~~~-  321 (343)
T 3lrv_A          259 FKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKT-KNWT-K----DEESALCLQSDTADF---------TDMDVVC-  321 (343)
T ss_dssp             ---CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTT-CSEE-E----EEEEECCC----CCC---------CEEEEEE-
T ss_pred             ccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccc-cceE-e----cCceeEecCcccccc---------ceeEEEe-
Confidence            334  369999997 56666666 8889999986642 2111 1    5677888888   55         5788888 


Q ss_pred             CCCeEEEEcCC
Q 020107          315 YDRLLRIWMPE  325 (331)
Q Consensus       315 ~d~~i~iW~~~  325 (331)
                      .|+.+.++-..
T Consensus       322 ~d~~~~~~~~~  332 (343)
T 3lrv_A          322 GDGGIAAILKT  332 (343)
T ss_dssp             ETTEEEEEEEC
T ss_pred             cCCceEEEEec
Confidence            79999887543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.9e-32  Score=230.49  Aligned_cols=240  Identities=10%  Similarity=0.051  Sum_probs=181.3

Q ss_pred             cEEEEEeecccCC-CCCCCCCcEEEEeccCcccceEEeEe-------eecCcEeEEEEcCCCCCCCCeEEEE--cCCccE
Q 020107           25 HVLAASTYTLQEG-DKPSRNGSISLFNVNAEEKNLELLYR-------MDTAGIFDIKWSPVGGNAGPFLAQA--DADGGL   94 (331)
Q Consensus        25 ~~la~g~~~~~~~-~~~~~~g~i~vw~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~l~~~--~~dg~i   94 (331)
                      +.+++|....... -.+..|+.+++|++......+.....       .+...+.+++|+|+    +++|+++  +.|+.+
T Consensus        84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD----g~~la~as~~~d~~i  159 (365)
T 4h5i_A           84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE----GTVAAIASSKVPAIM  159 (365)
T ss_dssp             TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT----SSCEEEEESCSSCEE
T ss_pred             CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC----CCEEEEEECCCCCEE
Confidence            6777765211000 11235889999998876533332211       12345889999999    8887654  468999


Q ss_pred             -EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEE
Q 020107           95 -LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTG  168 (331)
Q Consensus        95 -iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  168 (331)
                       +|++.+.+.     |...|.+++|+|+++++++++.+ .+++|+..+++.........|...|.+++|+| ++..++++
T Consensus       160 ~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~  237 (365)
T 4h5i_A          160 RIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAA  237 (365)
T ss_dssp             EEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEE
T ss_pred             EEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEE
Confidence             999988654     56789999999999999999865 56667666665444455667889999999999 88899998


Q ss_pred             cCCC----eEEEEEccCCCceee-eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCce
Q 020107          169 SDDC----KFSGWDIRESPFKLA-FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV  243 (331)
Q Consensus       169 ~~dg----~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  243 (331)
                      +.|+    .+++||+........ ......|...|++++|+| ++++||+|+.|++|+|||++++ +++..+..+|..+|
T Consensus       238 s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~-~~~~~~~~gH~~~V  315 (365)
T 4h5i_A          238 SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDL-SMSKIFKQAHSFAI  315 (365)
T ss_dssp             EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTT-EEEEEETTSSSSCE
T ss_pred             ecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCC-cEEEEecCcccCCE
Confidence            8777    688999887653211 111234899999999999 9999999999999999999985 56665456899999


Q ss_pred             EEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          244 WRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      ++++|+|++ .+|++++.|+.+++|++...
T Consensus       316 ~~v~fSpdg-~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          316 TEVTISPDS-TYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEECTTS-CEEEEEETTSEEEEEECCTT
T ss_pred             EEEEECCCC-CEEEEEeCCCeEEEEEcCCC
Confidence            999999997 77888888999999999653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.5e-32  Score=226.42  Aligned_cols=250  Identities=14%  Similarity=0.132  Sum_probs=201.0

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC-Ccc-------cCccEEEEEEcCCCCeEEEEecCCe
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG-EKI-------SSSMCLCLEWNPSATSITVGLSDGS  128 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~-~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~  128 (331)
                      ......+|...|++++|+|+..+ +++|++|+.||.+ +|++.+ ...       |...|.+++|+|++++|++++.||.
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLP-GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSS-SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eeEeccCCCCceEEEEEcCCCCC-ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            33455789999999999999211 2799999999999 999986 222       6889999999999999999999999


Q ss_pred             EEEEEccccceeeeeeeecccceeEEEee--CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107          129 VSIVSVVESQLEVLQQWKAHEFELWATSF--DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS  206 (331)
Q Consensus       129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  206 (331)
                      |++||+++++.  + .+..|...|.+++|  +| ++.+|++++.|+.|++||+++++....+..    ...+.++.+.+ 
T Consensus       110 v~iwd~~~~~~--~-~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~-  180 (368)
T 3mmy_A          110 AKMWDLSSNQA--I-QIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQL----PERCYCADVIY-  180 (368)
T ss_dssp             EEEEETTTTEE--E-EEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEEC----SSCEEEEEEET-
T ss_pred             EEEEEcCCCCc--e-eeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEec----CCCceEEEecC-
Confidence            99999998754  3 35669999999999  77 778999999999999999999987777775    34677777764 


Q ss_pred             CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC---CeEEEEEecCcEEEEEEcCccc-ceeEEee
Q 020107          207 DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP---GLVLAACMHNGFAVVKVGGEKA-EVLETYA  282 (331)
Q Consensus       207 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  282 (331)
                        ..+++++.++.+++||++............+...+..+.+.++..   ..+++++.++.+++|++..... ..+..+.
T Consensus       181 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  258 (368)
T 3mmy_A          181 --PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK  258 (368)
T ss_dssp             --TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred             --CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence              588889999999999999865444443334455666666655431   1277778888899999987543 6677888


Q ss_pred             cCCc------------ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          283 KHGS------------LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       283 ~h~~------------~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +|..            .|++++|+|++         ++|++++ .||.|++||+.++..
T Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~---------~~l~s~~-~dg~i~iwd~~~~~~  307 (368)
T 3mmy_A          259 CHRSNGTNTSAPQDIYAVNGIAFHPVH---------GTLATVG-SDGRFSFWDKDARTK  307 (368)
T ss_dssp             CSEEC----CCCEEECCEEEEEECTTT---------CCEEEEE-TTSCEEEEETTTTEE
T ss_pred             eeecccccccccccccceEEEEEecCC---------CEEEEEc-cCCeEEEEECCCCcE
Confidence            8876            79999999998         6999999 999999999987643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.7e-32  Score=231.52  Aligned_cols=262  Identities=16%  Similarity=0.184  Sum_probs=203.4

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcC-CCCCCCCeEEEEcCCccE-EEecCCCcc-----------------
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSP-VGGNAGPFLAQADADGGL-LRDITGEKI-----------------  103 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------------  103 (331)
                      ++.+++|+++...  ......+|.+.|++++|+| +    +++|++++.||.+ +|++.+...                 
T Consensus        22 ~~~~~v~~~~~~~--~~~~~~~h~~~v~~~~~s~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   95 (408)
T 4a11_B           22 ESTRRVLGLELNK--DRDVERIHGGGINTLDIEPVE----GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP   95 (408)
T ss_dssp             HHHHHHHTEEECT--TEEECCCCSSCEEEEEECTTT----CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred             cCcceeeccccCc--ceeeeeccCCcEEEEEEecCC----CCEEEEEcCCCeEEEEECCCCcccceEecccccccccccc
Confidence            5668888887765  4556678999999999999 8    8899999999999 999986532                 


Q ss_pred             --cCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC--CcEEEEEcCCCeEEEEE
Q 020107          104 --SSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ--PHMVYTGSDDCKFSGWD  178 (331)
Q Consensus       104 --~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d  178 (331)
                        |...|.+++|+| ++.+|++++.||.|++||+.+++.  ...+. +...+.++.|+|..  +.++++++.++.|++||
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT--ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE--EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc--ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence              778899999999 777999999999999999998754  44444 67789999999843  34899999999999999


Q ss_pred             ccCCCceeeeecccCCCcceEEEEEecCCCC-EEEEEecCCeEEEEEecCCCCCceee--------------eeecCCce
Q 020107          179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSN-TLLTGSYDEYLRVWDVRSISKPVNET--------------SVCLGGGV  243 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~--------------~~~~~~~v  243 (331)
                      +++++....+..   |...|.+++|+| ++. +|++++.||.|++||++....++...              ...|...|
T Consensus       173 ~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          173 LKSGSCSHILQG---HRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             SSSSCCCEEECC---CCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             CCCcceeeeecC---CCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence            999887777766   999999999999 666 69999999999999998764343331              14688899


Q ss_pred             EEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC--Cc--ceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107          244 WRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH--GS--LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL  319 (331)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i  319 (331)
                      .+++|+|++ ..+++++.++.+++|++...  +....+..+  ..  ....+.+.....        ..+++++ .|+.|
T Consensus       249 ~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~i  316 (408)
T 4a11_B          249 NGLCFTSDG-LHLLTVGTDNRMRLWNSSNG--ENTLVNYGKVCNNSKKGLKFTVSCGCS--------SEFVFVP-YGSTI  316 (408)
T ss_dssp             EEEEECTTS-SEEEEEETTSCEEEEETTTC--CBCCCCCCCCCCCCSSCCCCEECCSSS--------SCEEEEE-ETTEE
T ss_pred             eEEEEcCCC-CEEEEecCCCeEEEEECCCC--ccceeccccccccccccceeEEecCCC--------ceEEEEe-cCCEE
Confidence            999999986 67888888899999999874  222222211  11  111122222211        4566666 79999


Q ss_pred             EEEcCCCccc
Q 020107          320 RIWMPESDCL  329 (331)
Q Consensus       320 ~iW~~~~~~~  329 (331)
                      ++||+.++..
T Consensus       317 ~v~d~~~~~~  326 (408)
T 4a11_B          317 AVYTVYSGEQ  326 (408)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEECcCCcc
Confidence            9999987653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=3.9e-31  Score=213.45  Aligned_cols=264  Identities=11%  Similarity=0.005  Sum_probs=179.0

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcc-cceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE--EEecCCC
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEE-KNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL--LRDITGE  101 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i--iw~~~~~  101 (331)
                      ..+++++           ...|++|+..... ........+|..+|..+.+.|+.   ..++.++-.+-.+  ++.+.-.
T Consensus        55 ~~~~~~~-----------~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           55 PCIITAC-----------EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDV---YNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEE-----------SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTC---CSCEEEEECSSSEEEEEEECC-
T ss_pred             cEEEEec-----------cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcc---cceeeeeeccccccceEEEEEC
Confidence            3677776           8899999998862 12444557788899999999974   3355555433333  2221111


Q ss_pred             cc------------cCccEEEEEEcCCCCeEEEEe--cCCeEEEEEccc-cceeeeeeeecccceeEEEeeCC--CCCcE
Q 020107          102 KI------------SSSMCLCLEWNPSATSITVGL--SDGSVSIVSVVE-SQLEVLQQWKAHEFELWATSFDV--HQPHM  164 (331)
Q Consensus       102 ~~------------~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~~  164 (331)
                      .-            +...+..+   ++++.+.++.  .|+.|++|++.. ++.  +..+..|...++.++|+|  .++.+
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~--~~s~~~~~~~v~~l~fs~~~g~~~~  195 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGG--KENQFLMPPEETILTFAEVQGMQEA  195 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCE--EEEEEECCCSSCEEEEEEEETSTTE
T ss_pred             CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCce--eeeeccCCCceeeEEeeccCCCCce
Confidence            00            11222222   3333344432  389999999954 543  566677888888888886  25689


Q ss_pred             EEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE------------EEEecCCeEEEEEecCCCCCc
Q 020107          165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL------------LTGSYDEYLRVWDVRSISKPV  232 (331)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------~~~~~d~~i~iwd~~~~~~~~  232 (331)
                      |++++.|++|+|||+++++++..+.....+...+.+++|+| ++.++            ++|+.|++|++||..++ +.+
T Consensus       196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg-k~l  273 (356)
T 2w18_A          196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT-LSV  273 (356)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTT-EEE
T ss_pred             EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCC-EEE
Confidence            99999999999999999998888875122244688889999 88876            66889999999999875 333


Q ss_pred             eeee----eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCccee-eeeecCCCCcccccccCc
Q 020107          233 NETS----VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAY-GADWQRGRSSLEGKRKNS  307 (331)
Q Consensus       233 ~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~  307 (331)
                      ....    .+|...+.+..++  + ..+++++.|+.+++|++..  ++.+.++.+|...+. .++|+|++         +
T Consensus       274 ~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~t--Gk~l~tL~gH~~~vvs~vafSPDG---------~  339 (356)
T 2w18_A          274 GVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLL--GQCTALLPPVSDQHWSFVKWSGTD---------S  339 (356)
T ss_dssp             EEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTT--CSEEEEECCC--CCCCEEEECSSS---------S
T ss_pred             EEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCC--CcEEEEecCCCCCeEEEEEECCCC---------C
Confidence            3211    2444444444444  2 4566666788999999977  689999999988666 58999999         6


Q ss_pred             EEEEeecCCCeEEEEcC
Q 020107          308 LVATCSFYDRLLRIWMP  324 (331)
Q Consensus       308 ~l~s~~~~d~~i~iW~~  324 (331)
                      +|+||+ .|++|+|||+
T Consensus       340 ~LaSGS-~D~TIklWd~  355 (356)
T 2w18_A          340 HLLAGQ-KDGNIFVYHY  355 (356)
T ss_dssp             EEEEEC-TTSCEEEEEE
T ss_pred             EEEEEE-CCCcEEEecC
Confidence            999999 9999999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3.8e-30  Score=218.81  Aligned_cols=263  Identities=11%  Similarity=0.106  Sum_probs=204.4

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE-EEEcCCccE-EEecCCCc
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL-AQADADGGL-LRDITGEK  102 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i-iw~~~~~~  102 (331)
                      .++++++          .++.|++||+.+++  .......| ..+.+++|+|+    ++.| ++++.|+.+ +|++.+.+
T Consensus         3 ~l~vs~~----------~d~~v~v~d~~~~~--~~~~~~~~-~~~~~~~~s~d----g~~l~~~~~~d~~i~v~d~~~~~   65 (391)
T 1l0q_A            3 FAYIANS----------ESDNISVIDVTSNK--VTATIPVG-SNPMGAVISPD----GTKVYVANAHSNDVSIIDTATNN   65 (391)
T ss_dssp             EEEEEET----------TTTEEEEEETTTTE--EEEEEECS-SSEEEEEECTT----SSEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEEEEcC----------CCCEEEEEECCCCe--EEEEeecC-CCcceEEECCC----CCEEEEECCCCCeEEEEECCCCe
Confidence            4667776          79999999998875  33333444 45899999999    7766 677789999 99998765


Q ss_pred             c-----cCccEEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE-EEEcCCCeEE
Q 020107          103 I-----SSSMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV-YTGSDDCKFS  175 (331)
Q Consensus       103 ~-----~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~  175 (331)
                      .     ....+.+++|+|+++.|++++ .++.|++||+.+++.  +..+.. ...+.+++|+| +++.+ ++++.++.|+
T Consensus        66 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~--~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~  141 (391)
T 1l0q_A           66 VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV--AGTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVS  141 (391)
T ss_dssp             EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred             EEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeE--EEEEeC-CCCcceEEECC-CCCEEEEEeCCCCEEE
Confidence            4     245899999999999876554 579999999998754  555554 44689999999 55555 7888999999


Q ss_pred             EEEccCCCceeeeecccCCCcceEEEEEecCCCCEE-EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCC
Q 020107          176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL-LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPG  254 (331)
Q Consensus       176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  254 (331)
                      +||+++++....+..    ...+.+++|+| +++.+ ++++.|+.|++||+++. +....  ..+...+.+++|+|++ .
T Consensus       142 ~~d~~~~~~~~~~~~----~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~-~~~~~--~~~~~~~~~~~~~~~g-~  212 (391)
T 1l0q_A          142 VINTVTKAVINTVSV----GRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTN-SVIDT--VKVEAAPSGIAVNPEG-T  212 (391)
T ss_dssp             EEETTTTEEEEEEEC----CSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTT-EEEEE--EECSSEEEEEEECTTS-S
T ss_pred             EEECCCCcEEEEEec----CCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCC-eEEEE--EecCCCccceEECCCC-C
Confidence            999998876666654    45679999999 77766 67788999999999885 44443  5677789999999997 5


Q ss_pred             eEEEEE---ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          255 LVLAAC---MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       255 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      .+++++   .++.+.+|++..  ++.+..+..|. .+.+++|+|++.        .++++++ .|+.|++||++++.+
T Consensus       213 ~l~~~~~~~~~~~v~~~d~~~--~~~~~~~~~~~-~~~~~~~s~dg~--------~l~~s~~-~d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          213 KAYVTNVDKYFNTVSMIDTGT--NKITARIPVGP-DPAGIAVTPDGK--------KVYVALS-FXNTVSVIDTATNTI  278 (391)
T ss_dssp             EEEEEEECSSCCEEEEEETTT--TEEEEEEECCS-SEEEEEECTTSS--------EEEEEET-TTTEEEEEETTTTEE
T ss_pred             EEEEEecCcCCCcEEEEECCC--CeEEEEEecCC-CccEEEEccCCC--------EEEEEcC-CCCEEEEEECCCCcE
Confidence            555555   578888888866  46677777665 478999999984        3447777 899999999987643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.8e-30  Score=223.84  Aligned_cols=276  Identities=11%  Similarity=0.117  Sum_probs=213.1

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEE----eEeeecCcEeEEEEcCCCCCCCC
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL----LYRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      ....+.+++|+|.+   .++++++          .++.|++||+.+++ ....    ...+|...|.+++|+|+    +.
T Consensus       121 ~~~~~~~~~~s~~~---~~~~~~~----------~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~v~~~~~~~~----~~  182 (433)
T 3bws_A          121 TGFQPKSVRFIDNT---RLAIPLL----------EDEGMDVLDINSGQ-TVRLSPPEKYKKKLGFVETISIPEH----NE  182 (433)
T ss_dssp             CSSCBCCCEESSSS---EEEEEBT----------TSSSEEEEETTTCC-EEEECCCHHHHTTCCEEEEEEEGGG----TE
T ss_pred             CCCCceEEEEeCCC---eEEEEeC----------CCCeEEEEECCCCe-EeeecCcccccccCCceeEEEEcCC----CE
Confidence            34456688888832   6777776          68899999998775 2221    22467788999999999    89


Q ss_pred             eEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           84 FLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      ++++++.|+.+ +|++.+.+.      +...+.+++|+|+++.+++++ .++.|++||+++++.  +..+.. ...+.++
T Consensus       183 ~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~-~~~~~~~  259 (433)
T 3bws_A          183 LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE--IRKTDK-IGLPRGL  259 (433)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEECCC-CSEEEEE
T ss_pred             EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE--EEEecC-CCCceEE
Confidence            99999999999 999987543      467899999999999885554 799999999988754  555554 3468999


Q ss_pred             eeCCCCCcEEEEEc--------CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC-EEEEEecCCeEEEEEec
Q 020107          156 SFDVHQPHMVYTGS--------DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN-TLLTGSYDEYLRVWDVR  226 (331)
Q Consensus       156 ~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~iwd~~  226 (331)
                      +|+| +++.+++++        .|+.|++||+++++....+.    |...+.+++|+| +++ ++++++.|+.|++||++
T Consensus       260 ~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          260 LLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----PPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             EECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----EEECEEEEEECS-STTEEEEEETTTTEEEEEETT
T ss_pred             EEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----CCCCcceEEECC-CCCEEEEEecCCCEEEEEECC
Confidence            9999 777777777        58899999999887555443    566899999999 775 56777899999999999


Q ss_pred             CCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec---------------CcEEEEEEcCcccceeEEeecCCcceeee
Q 020107          227 SISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH---------------NGFAVVKVGGEKAEVLETYAKHGSLAYGA  291 (331)
Q Consensus       227 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  291 (331)
                      +. +....  ..+...+.+++|+|++ ..+++++.+               +.+.+|++..  ++.+..+.. ...+.++
T Consensus       334 ~~-~~~~~--~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~--~~~~~~~~~-~~~~~~~  406 (433)
T 3bws_A          334 EK-KVQKS--IPVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT--DTVKEFWEA-GNQPTGL  406 (433)
T ss_dssp             TT-EEEEE--EECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT--TEEEEEEEC-SSSEEEE
T ss_pred             CC-cEEEE--ecCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCC--CcEEEEecC-CCCCceE
Confidence            74 44444  5678889999999997 455555542               4778888765  566777765 4578999


Q ss_pred             eecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +|+|++         ++|++++..|+.|++|+++.
T Consensus       407 ~~s~dg---------~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          407 DVSPDN---------RYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EECTTS---------CEEEEEETTTTEEEEEEETT
T ss_pred             EEcCCC---------CEEEEEECCCCeEEEEEecC
Confidence            999998         57776651599999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-30  Score=223.92  Aligned_cols=232  Identities=14%  Similarity=0.001  Sum_probs=188.0

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc---c---------------------------------------
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK---I---------------------------------------  103 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~---~---------------------------------------  103 (331)
                      .++.+++|+|+    +++|+++. ++.+ +|++.+++   .                                       
T Consensus         5 ~p~~~v~~s~d----g~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            5 HPLQNLLTSRD----GSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             CCCCEEEECSS----SSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred             ccEEEEEecCC----CCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            57899999999    88666664 5667 99987665   1                                       


Q ss_pred             ---------------------cCccEEEEEEcCCCCeE-EEEecCCeEEEEEcc--ccceeeeeeee--cccceeEEEee
Q 020107          104 ---------------------SSSMCLCLEWNPSATSI-TVGLSDGSVSIVSVV--ESQLEVLQQWK--AHEFELWATSF  157 (331)
Q Consensus       104 ---------------------~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~~~--~~~~~v~~~~~  157 (331)
                                           +...|.+++|+|++++| ++++.||.|++||+.  +++.  +..+.  .|...|.+++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV--LKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC--EEEEEEEECSSCEEEEEE
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce--eeeeecccCCCCceEEEE
Confidence                                 11259999999999996 889999999999998  6644  44444  56788999999


Q ss_pred             CCCCCcEEEEEcCCCeEEEEEccCCCcee----eeecccCCCcceEEEEEecCC---CCEEEEEecCCeEEEEEecCCCC
Q 020107          158 DVHQPHMVYTGSDDCKFSGWDIRESPFKL----AFQNSKIHKMGVCCIASIPSD---SNTLLTGSYDEYLRVWDVRSISK  230 (331)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~  230 (331)
                      +| ++.+|++++.+|.+++|++.++....    .+..   |...|.+++|+| +   +.+|++++.|+.|++||+++. .
T Consensus       158 sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~-~  231 (450)
T 2vdu_B          158 AE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILG---HVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQC-F  231 (450)
T ss_dssp             CT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEE---CSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCT-T
T ss_pred             cC-CCCEEEEEeCCCcEEEEecCCcccccccceeeec---ccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCC-c
Confidence            99 88999999999999999998876544    4444   999999999999 8   889999999999999999985 4


Q ss_pred             CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-------------------------CC
Q 020107          231 PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-------------------------HG  285 (331)
Q Consensus       231 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------h~  285 (331)
                      .+......|...|.+++|+ ++ .++++++.++.+++|++..  ++.+..+..                         ..
T Consensus       232 ~~~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          232 IVDKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKT--GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             CEEEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTT--CCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             eeeeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCC--CcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence            4544346899999999999 65 7788888888999999876  456666652                         23


Q ss_pred             cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          286 SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       286 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                      ..|.+++|+|++         ++|++++..|+.|++|++
T Consensus       308 ~~v~~i~~~~~~---------~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          308 FAVSKIIKSKNL---------PFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCEEEEEECSSS---------SEEEEEETTCSEEEEEEE
T ss_pred             EEEEEEEEeCCC---------CEEEEEECCCCeEEEEEe
Confidence            568999999998         566666536999999999

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9.5e-31  Score=225.67  Aligned_cols=230  Identities=17%  Similarity=0.264  Sum_probs=195.8

Q ss_pred             eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107           63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  135 (331)
                      ..|...|.++.|  +    +++|++|+.||.+ +|++.+.+.      |...|.+++|  +++.|++|+.||.|++||+.
T Consensus       130 ~~~~~~v~~~~~--d----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          130 SETSKGVYCLQY--D----DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             CSSCCCEEEEEC--C----SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             cCCCCcEEEEEE--C----CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence            345667998887  4    6699999999999 999987653      7889999998  78899999999999999999


Q ss_pred             ccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107          136 ESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      +++.  +..+.+|...|.+++|++   +.+++++.||.|++||++++..........+|...|.+++|   +++++++++
T Consensus       202 ~~~~--~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~  273 (435)
T 1p22_A          202 TGEM--LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSAS  273 (435)
T ss_dssp             SCCE--EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEE
T ss_pred             CCcE--EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEe
Confidence            8854  778889999999999975   58999999999999999988765333333459999999999   468999999


Q ss_pred             cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107          216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR  295 (331)
Q Consensus       216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  295 (331)
                      .|+.|++||+++. +++.. +..|...|.++.|++   ..+++++.++.+++|++..  ++.+.++.+|...|.+++|  
T Consensus       274 ~dg~i~vwd~~~~-~~~~~-~~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~--  344 (435)
T 1p22_A          274 GDRTIKVWNTSTC-EFVRT-LNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC--GACLRVLEGHEELVRCIRF--  344 (435)
T ss_dssp             TTSEEEEEETTTC-CEEEE-EECCSSCEEEEEEET---TEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEC--
T ss_pred             CCCeEEEEECCcC-cEEEE-EcCCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCC--CCEEEEEeCCcCcEEEEEe--
Confidence            9999999999985 44444 578999999999953   6788888899999999987  5888899999999999999  


Q ss_pred             CCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          296 GRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       296 ~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ++         .+|++++ .||.|++||+.++
T Consensus       345 ~~---------~~l~sg~-~dg~i~vwd~~~~  366 (435)
T 1p22_A          345 DN---------KRIVSGA-YDGKIKVWDLVAA  366 (435)
T ss_dssp             CS---------SEEEEEE-TTSCEEEEEHHHH
T ss_pred             cC---------CEEEEEe-CCCcEEEEECCCC
Confidence            44         5899999 9999999998654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.9e-31  Score=226.76  Aligned_cols=229  Identities=13%  Similarity=0.059  Sum_probs=165.4

Q ss_pred             CcEEEEEeecccCCCCCCCCCcEEEEeccCcccce---EEeEeeecCcEeEEEEcC--------CCCCCCCeEEEEcCCc
Q 020107           24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNL---ELLYRMDTAGIFDIKWSP--------VGGNAGPFLAQADADG   92 (331)
Q Consensus        24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~---~~~~~~~~~~v~~~~~~~--------~~~~~~~~l~~~~~dg   92 (331)
                      +.+||+|+          .|++|+|||....+...   ...+.+|.+.|++++|+|        +    +++||+++.|+
T Consensus       101 ~~~las~~----------~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d----~~~las~s~D~  166 (393)
T 4gq1_A          101 SLFLACVC----------QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLA----EQVIASVGDDC  166 (393)
T ss_dssp             EEEEEEEE----------TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE----EEEEEEEETTS
T ss_pred             CCEEEEEe----------CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCC----CCEEEEEECCC
Confidence            36899998          89999999998865221   123468999999999998        5    78999999999


Q ss_pred             cE-EEecCCCcc------cCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceee-----------------------
Q 020107           93 GL-LRDITGEKI------SSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEV-----------------------  141 (331)
Q Consensus        93 ~i-iw~~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-----------------------  141 (331)
                      ++ +||+.+...      |...+.+++|+|++. +|++++.||+|++||+++++...                       
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            99 999976543      678999999999875 79999999999999998754211                       


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEE------------------EE
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCI------------------AS  203 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~------------------~~  203 (331)
                      .....+|...+.++.|.+.++..+++++.|+.+++||+..++....+..   |...+..+                  .+
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD---STMKLGPKNLLPNVQGISLFPSLLGACP  323 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEE
T ss_pred             eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee---ecCccccEEEccccccccccCcceeEEE
Confidence            0112357778899999855889999999999999999987765444433   33333222                  23


Q ss_pred             ec-CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          204 IP-SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       204 ~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      +| .++.++++|+.||.|++||+.++.. ... ...|..+|.+++|+|++  .++++++++++.+|++...
T Consensus       324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~-~~~~~~~V~svafspdG--~~LA~as~~Gv~lvrL~gf  390 (393)
T 4gq1_A          324 HPRYMDYFATAHSQHGLIQLINTYEKDS-NSI-PIQLGMPIVDFCWHQDG--SHLAIATEGSVLLTRLMGF  390 (393)
T ss_dssp             CSSCTTEEEEEETTTTEEEEEETTCTTC-CEE-EEECSSCEEEEEECTTS--SEEEEEESSEEEEEEEGGG
T ss_pred             ccCCCCEEEEEECCCCEEEEEECCCCcE-EEE-ecCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEEeCc
Confidence            33 2344677888999999999998643 333 47889999999999994  5566778899999998763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5e-30  Score=215.11  Aligned_cols=246  Identities=9%  Similarity=-0.044  Sum_probs=179.6

Q ss_pred             EEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc----cCccEEEEEEcCCCCeE-EE
Q 020107           48 LFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI----SSSMCLCLEWNPSATSI-TV  122 (331)
Q Consensus        48 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~----~~~~v~~~~~~~~~~~l-~~  122 (331)
                      +|++.... ++. ....|...|++++|+|+    +++|++|+.++..+|++.....    +...+..+++.++++.+ ++
T Consensus         3 i~s~~~~~-~~~-~~~~h~~~V~~v~fs~d----g~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (355)
T 3vu4_A            3 LGSMITRN-PIV-PENHVSNPVTDYEFNQD----QSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFV   76 (355)
T ss_dssp             ------------------CCCCCEEEECTT----SSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEE
T ss_pred             cccccccC-Ccc-ccccCCCceEEEEECCC----CCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEE
Confidence            34444443 232 33779999999999999    9999999998866999876543    12346678888888887 56


Q ss_pred             EecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-CceeeeecccCCCcceEEE
Q 020107          123 GLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQNSKIHKMGVCCI  201 (331)
Q Consensus       123 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~  201 (331)
                      ++.|+.|++||..+++.  +..+. +...|.+++|++ +  .++++. ++.|++||+.+. +....+..      +...+
T Consensus        77 ~~~d~~v~iWd~~~~~~--~~~~~-~~~~v~~v~~~~-~--~~~~~~-~~~i~i~d~~~~~~~~~~~~~------~~~~~  143 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQD--VSRIK-VDAPVKDLFLSR-E--FIVVSY-GDVISVFKFGNPWKRITDDIR------FGGVC  143 (355)
T ss_dssp             CSSTTEEEEEETTTTEE--EEEEE-CSSCEEEEEECS-S--EEEEEE-TTEEEEEESSTTCCBSSCCEE------EEEEE
T ss_pred             ECCccEEEEEECCCCcE--EEEEE-CCCceEEEEEcC-C--EEEEEE-cCEEEEEECCCCceeeEEecc------CCceE
Confidence            77789999999998754  55665 566899999987 3  344443 789999999987 54444432      34455


Q ss_pred             EEecCCCCEEEE--EecCCeEEEEEecCCC--------------CCceeeeeecCCceEEEEECCCCCCeEEEEEecCc-
Q 020107          202 ASIPSDSNTLLT--GSYDEYLRVWDVRSIS--------------KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG-  264 (331)
Q Consensus       202 ~~~~~~~~~l~~--~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-  264 (331)
                      ++++   .++++  |+.||.|++||+++..              .+....+..|.++|++++|+|++ .++++++.++. 
T Consensus       144 ~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~  219 (355)
T 3vu4_A          144 EFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTI  219 (355)
T ss_dssp             EEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSE
T ss_pred             EEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCE
Confidence            6665   45555  6899999999999753              12123357899999999999996 67777777777 


Q ss_pred             EEEEEEcCcccceeEEee-c-CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          265 FAVVKVGGEKAEVLETYA-K-HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +++|++..  ++.+.++. + |...|++++|+|++         ++|++++ .|++|++||+.++.
T Consensus       220 v~iwd~~~--~~~~~~~~~g~h~~~v~~~~~s~~~---------~~l~s~s-~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          220 IRVFKTED--GVLVREFRRGLDRADVVDMKWSTDG---------SKLAVVS-DKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEEETTT--CCEEEEEECTTCCSCEEEEEECTTS---------CEEEEEE-TTCEEEEEESSCCS
T ss_pred             EEEEECCC--CcEEEEEEcCCCCCcEEEEEECCCC---------CEEEEEE-CCCEEEEEEccCCC
Confidence            99999886  57888888 5 99999999999998         6999999 99999999997653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.98  E-value=9.9e-29  Score=203.99  Aligned_cols=234  Identities=18%  Similarity=0.255  Sum_probs=188.9

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+.+|+|+|.+   ++||+|+          .||.|++|++.+++  ......+|...+.++.+.+.      .+++++.
T Consensus        69 ~V~~v~~~~~~---~~l~sgs----------~Dg~v~iw~~~~~~--~~~~~~~h~~~~~~~~~~~~------~l~s~~~  127 (318)
T 4ggc_A           69 YISSVAWIKEG---NYLAVGT----------SSAEVQLWDVQQQK--RLRNMTSHSARVGSLSWNSY------ILSSGSR  127 (318)
T ss_dssp             CEEEEEECTTS---SEEEEEE----------TTSEEEEEETTTTE--EEEEEECCSSCEEEEEEETT------EEEEEET
T ss_pred             eEEEEEECCCC---CEEEEEE----------CCCcEEEeecCCce--eEEEecCccceEEEeecCCC------EEEEEec
Confidence            46778887776   8999999          79999999999886  44445789888888776655      9999999


Q ss_pred             CccE-EEecCCCc-------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce--eeeeeeecccceeEEEeeCCC
Q 020107           91 DGGL-LRDITGEK-------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL--EVLQQWKAHEFELWATSFDVH  160 (331)
Q Consensus        91 dg~i-iw~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~  160 (331)
                      ++.+ +|+.....       .|...+..+.+.+++++|++++.||.|++||+++++.  ........+...|.+++++|.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  207 (318)
T 4ggc_A          128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW  207 (318)
T ss_dssp             TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT
T ss_pred             CCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCC
Confidence            9999 77766543       2678899999999999999999999999999987643  223445567888999999986


Q ss_pred             CCcEE--EEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe--cCCeEEEEEecCCCCCceeee
Q 020107          161 QPHMV--YTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS--YDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       161 ~~~~l--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~  236 (331)
                      +...+  ++++.++.|++||.+.........    +...+..+.|+| .+..+++++  .|+.|++||++++ +++.. +
T Consensus       208 ~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~-l  280 (318)
T 4ggc_A          208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTM-AKVAE-L  280 (318)
T ss_dssp             STTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTC-CEEEE-E
T ss_pred             CCcEEEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCC-cEEEE-E
Confidence            66654  456788999999999877544433    678899999999 777766554  7999999999985 55554 5


Q ss_pred             eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      .+|.+.|++++|+|++ .++++++.|+.+++|++.+.
T Consensus       281 ~gH~~~V~~l~~spdg-~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          281 KGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCC
T ss_pred             cCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCC
Confidence            7899999999999997 67888888888999998764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-30  Score=222.75  Aligned_cols=230  Identities=11%  Similarity=0.002  Sum_probs=177.6

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCC---cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGE---KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE  136 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  136 (331)
                      ...+.-...|.+++|+|+    |+++|+++.|+++. +....   +.|...|.+++|+|+|       .++.+.+|+.+.
T Consensus         9 ~~~~~~~~~v~sv~~SpD----G~~iASas~D~TV~-d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~   76 (588)
T 2j04_A            9 VDRKEFEDWKNNLTWARD----GTLYLTTFPDISIG-QPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ   76 (588)
T ss_dssp             ECSCCCSSSSCCEEECTT----SCEEEECSSSEEEE-EECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS
T ss_pred             ccHhHhhccEEEEEECCC----CCEEEEEcCCceee-cccccceecCCCccEEEEEECCCC-------CcceEEEEeCCC
Confidence            333445678999999999    99999999999994 33222   3578999999999998       455555555432


Q ss_pred             cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc-----ceEEEEEecCCCCEE
Q 020107          137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM-----GVCCIASIPSDSNTL  211 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l  211 (331)
                      .   ....+ .|...|.+++|+| ++..|++++.||.|++||...  ....+   . |..     .|.+++|+| ++++|
T Consensus        77 ~---~~~~~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l---~-~~~~~~~~sv~svafSP-DG~~L  144 (588)
T 2j04_A           77 N---GLLNS-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNL---D-SKGNLSSRTYHCFEWNP-IESSI  144 (588)
T ss_dssp             S---CSSTT-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEEC---C-CSSCSTTTCEEEEEECS-SSSCE
T ss_pred             c---eEeec-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeec---c-CCCccccccEEEEEEcC-CCCEE
Confidence            2   22333 3578899999999 889999999999999999543  22222   2 443     599999999 99999


Q ss_pred             EEEecCCeEEEEEecCCCC--C----ceee---eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc-eeEEe
Q 020107          212 LTGSYDEYLRVWDVRSISK--P----VNET---SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE-VLETY  281 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~--~----~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  281 (331)
                      ++|+.||+|++||+..+..  +    +..+   ..+|...|.+++|+|+  + +++++.|+.+++|++...... ...++
T Consensus       145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd--g-Laass~D~tVrlWd~~~~~~~~~~~tL  221 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED--V-LVAALSNNSVFSMTVSASSHQPVSRMI  221 (588)
T ss_dssp             EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT--E-EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred             EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC--c-EEEEeCCCeEEEEECCCCccccceeee
Confidence            9999999999999998531  1    2221   1456789999999999  5 888999999999998775322 34566


Q ss_pred             -ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          282 -AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       282 -~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                       .+|...|.+++|+  +         +.||+++  +++|++||+.++.+
T Consensus       222 ~~~h~~~V~svaFs--g---------~~LASa~--~~tIkLWd~~~~~~  257 (588)
T 2j04_A          222 QNASRRKITDLKIV--D---------YKVVLTC--PGYVHKIDLKNYSI  257 (588)
T ss_dssp             ECCCSSCCCCEEEE--T---------TEEEEEC--SSEEEEEETTTTEE
T ss_pred             cccccCcEEEEEEE--C---------CEEEEEe--CCeEEEEECCCCeE
Confidence             4788999999999  4         5899988  69999999987754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.5e-27  Score=202.78  Aligned_cols=287  Identities=14%  Similarity=0.086  Sum_probs=205.5

Q ss_pred             eecCcceeEeeecCCCCCcEE-EEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107            7 ELDGNADAVEFCPQDSYHHVL-AASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~l-a~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      .....+.+++|+|.+   ++| ++++          .++.|++||+.+++ .+..+ .. ...+.+++|+|+    +++|
T Consensus        29 ~~~~~~~~~~~s~dg---~~l~~~~~----------~d~~i~v~d~~~~~-~~~~~-~~-~~~v~~~~~spd----g~~l   88 (391)
T 1l0q_A           29 PVGSNPMGAVISPDG---TKVYVANA----------HSNDVSIIDTATNN-VIATV-PA-GSSPQGVAVSPD----GKQV   88 (391)
T ss_dssp             ECSSSEEEEEECTTS---SEEEEEEG----------GGTEEEEEETTTTE-EEEEE-EC-SSSEEEEEECTT----SSEE
T ss_pred             ecCCCcceEEECCCC---CEEEEECC----------CCCeEEEEECCCCe-EEEEE-EC-CCCccceEECCC----CCEE
Confidence            344567888998877   555 6665          59999999998875 33333 33 348999999999    7766


Q ss_pred             E-EEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeE-EEEecCCeEEEEEccccceeeeeeeecccceeEEEee
Q 020107           86 A-QADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSI-TVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSF  157 (331)
Q Consensus        86 ~-~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  157 (331)
                      + +++.++.+ +|++.+.+.     +...+.+++|+|+++.+ ++++.++.|++||+.+++.  +..+..+ ..+.+++|
T Consensus        89 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~-~~~~~~~~  165 (391)
T 1l0q_A           89 YVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV--INTVSVG-RSPKGIAV  165 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEECC-SSEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEecC-CCcceEEE
Confidence            4 55667888 999987654     34578999999999987 6777799999999988754  5555544 45689999


Q ss_pred             CCCCCcEE-EEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCCCce
Q 020107          158 DVHQPHMV-YTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISKPVN  233 (331)
Q Consensus       158 ~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~  233 (331)
                      +| +++.+ ++++.++.|++||+++++....+.    +...+.+++|+| ++.+|++++   .++.|++||+++. +++.
T Consensus       166 ~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~-~~~~  238 (391)
T 1l0q_A          166 TP-DGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTN-KITA  238 (391)
T ss_dssp             CT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTT-EEEE
T ss_pred             CC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCC-eEEE
Confidence            99 55554 788899999999999887655554    466899999999 888888887   6899999999875 4444


Q ss_pred             eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCccee---eeeecCCCCc-----------
Q 020107          234 ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAY---GADWQRGRSS-----------  299 (331)
Q Consensus       234 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---~~~~~~~~~~-----------  299 (331)
                      .  ......+.+++|+|+++.++++++.++.+++|++..  ++.+..+..|..+..   .+.+.|++..           
T Consensus       239 ~--~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~  314 (391)
T 1l0q_A          239 R--IPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT--NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNIT  314 (391)
T ss_dssp             E--EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCC
T ss_pred             E--EecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC--CcEEEEEECCcCCCccceeeecccccccccccccccccc
Confidence            4  333456899999999733335556678888888876  566777765544321   1222221100           


Q ss_pred             ccccccC--cEEEEeecCCCeEEEEcCCCcc
Q 020107          300 LEGKRKN--SLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       300 ~~~~~~~--~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ....+..  ..+...+ .|..+++|++.++.
T Consensus       315 ~~~~~~~~~~~~~~~~-~~~~~~~W~~~~g~  344 (391)
T 1l0q_A          315 SGYIFLSEPVQFTDLS-KDATEWKWDFGDGS  344 (391)
T ss_dssp             SSEEETTCCEEEEECC-BSCSEEEEECSSSC
T ss_pred             cccccccceEEEEeCC-CCceEEEEECCCCc
Confidence            0000001  3466667 79999999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.8e-29  Score=206.73  Aligned_cols=231  Identities=11%  Similarity=0.090  Sum_probs=171.8

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc--------cceEEeEeeecCcEeEEEEcC--CCCC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE--------KNLELLYRMDTAGIFDIKWSP--VGGN   80 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~--------~~~~~~~~~~~~~v~~~~~~~--~~~~   80 (331)
                      .+.++.++|.      +++|+          .|+.|++|+.....        ..+......|...|.+++|+|  +   
T Consensus        78 ~v~~~~~~~~------~~s~s----------~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---  138 (343)
T 3lrv_A           78 NPRTGGEHPA------IISRG----------PCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN---  138 (343)
T ss_dssp             CCCTTCCCCS------EEEEC----------STTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC------
T ss_pred             CceeeeeCCc------eEEec----------CCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCC---
Confidence            3444445443      77887          79999999876321        123344446668899999999  8   


Q ss_pred             CCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec-ccce
Q 020107           81 AGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA-HEFE  151 (331)
Q Consensus        81 ~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~  151 (331)
                       +++|++++.||.+ +|++.+.+.       +...+.+++|+|++.+|++|+.||.|++||+++++. ....+.. |..+
T Consensus       139 -~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~-~~~~~~~~h~~~  216 (343)
T 3lrv_A          139 -TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ-ASSRFPVDEEAK  216 (343)
T ss_dssp             -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS-CCEECCCCTTSC
T ss_pred             -CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC-CccEEeccCCCC
Confidence             8899999999999 999987654       345799999999999999999999999999998764 1156676 9999


Q ss_pred             eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcce--EEEEEecCCCCEEEEEec-CCeEEEEEecCC
Q 020107          152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV--CCIASIPSDSNTLLTGSY-DEYLRVWDVRSI  228 (331)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~  228 (331)
                      |++++|+| ++.+|++++ ++.|++||+++.+....+.....|...+  .+++|+| ++.+|++++. |+.|++|++...
T Consensus       217 v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          217 IKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             EEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEccc
Confidence            99999999 889999999 5599999999987655554322233444  4699999 9999999998 999999999875


Q ss_pred             CCCceeeeeecCCceEEEEECC---CCCCeEEEEEecCcEEEEEEcC
Q 020107          229 SKPVNETSVCLGGGVWRIKHHP---FIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      .+....      .++..++|.|   +. ..+++++.++.+.++-...
T Consensus       294 ~~~~~~------~~~~~~~~~~~~~~~-~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          294 TKNWTK------DEESALCLQSDTADF-TDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             TCSEEE------EEEEECCC----CCC-CEEEEEEETTEEEEEEECS
T ss_pred             ccceEe------cCceeEecCcccccc-ceeEEEecCCceEEEEecC
Confidence            333221      5678888888   54 5666777777765554433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=2.5e-28  Score=210.33  Aligned_cols=235  Identities=8%  Similarity=-0.047  Sum_probs=188.9

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEEcCCCCeEEEEecCCeEEEEE
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEWNPSATSITVGLSDGSVSIVS  133 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  133 (331)
                      ...+.+++|+|+    +.++++++.++.+ +|++.+++.           |...+.+++|+++++.+++++.|+.|++||
T Consensus       122 ~~~~~~~~~s~~----~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d  197 (433)
T 3bws_A          122 GFQPKSVRFIDN----TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFD  197 (433)
T ss_dssp             SSCBCCCEESSS----SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEE
T ss_pred             CCCceEEEEeCC----CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEE
Confidence            345779999996    8899999999999 999987543           355899999999999999999999999999


Q ss_pred             ccccceeeeeeeecccceeEEEeeCCCCCcEE-EEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107          134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMV-YTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL  212 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  212 (331)
                      +++++.  +..+..|...+.+++|+| ++..+ ++++.++.|++||+++++....+..    ...+.+++|+| ++++++
T Consensus       198 ~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~-~g~~l~  269 (433)
T 3bws_A          198 LKTLAY--KATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDK----IGLPRGLLLSK-DGKELY  269 (433)
T ss_dssp             TTTCCE--EEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCC----CSEEEEEEECT-TSSEEE
T ss_pred             CCCceE--EEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecC----CCCceEEEEcC-CCCEEE
Confidence            988754  666777888999999999 55555 6666899999999998876555543    45699999999 888888


Q ss_pred             EEe--------cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107          213 TGS--------YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH  284 (331)
Q Consensus       213 ~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  284 (331)
                      +++        .|+.|++||++++ +.+..  ..+...+..++|+|+++.++++++.++.+.+|++..  ++.+..+. +
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~--~~~~~~~~-~  343 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKE-KLIDT--IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE--KKVQKSIP-V  343 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTT-EEEEE--EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT--TEEEEEEE-C
T ss_pred             EEECCCCccccCCCeEEEEECCCC-cEEee--ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC--CcEEEEec-C
Confidence            888        4889999999875 44443  466678999999999744555556778888888875  45666665 6


Q ss_pred             CcceeeeeecCCCCcccccccCcEEEEeecC---------------CCeEEEEcCCCcc
Q 020107          285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFY---------------DRLLRIWMPESDC  328 (331)
Q Consensus       285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~---------------d~~i~iW~~~~~~  328 (331)
                      ...+.+++|+|++         ++|++++ .               ||.|++||+.++.
T Consensus       344 ~~~~~~~~~s~dg---------~~l~~~~-~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          344 FDKPNTIALSPDG---------KYLYVSC-RGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             SSSEEEEEECTTS---------SEEEEEE-CCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             CCCCCeEEEcCCC---------CEEEEEe-cCCCccccccccccccceEEEEEECCCCc
Confidence            7789999999998         5777766 4               5799999998764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=3.1e-27  Score=202.07  Aligned_cols=282  Identities=11%  Similarity=0.078  Sum_probs=201.3

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCC----cEEEEec--cCcccceEEeEeeecCcEeEEEEcCC-------
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNG----SISLFNV--NAEEKNLELLYRMDTAGIFDIKWSPV-------   77 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g----~i~vw~~--~~~~~~~~~~~~~~~~~v~~~~~~~~-------   77 (331)
                      .+....|.+.+.  +++++|+....      .+|    .|+|||+  .+++......+.+|...+..+++++.       
T Consensus        64 ~~~~~~w~~~g~--~~~~~g~~~~~------~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  135 (415)
T 2hqs_A           64 EVQPAAWSALGI--DAVVVGQVTPN------PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKL  135 (415)
T ss_dssp             GCCHHHHHTTTC--CEEEEEEEEEC------TTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHhcCC--CEEEEEEEEEC------CCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHH
Confidence            445566666665  68888863211      367    8999999  77653334556788888888877751       


Q ss_pred             -C---CCCCCeEEEEcCC------ccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCC---eEEEEEccccc
Q 020107           78 -G---GNAGPFLAQADAD------GGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDG---SVSIVSVVESQ  138 (331)
Q Consensus        78 -~---~~~~~~l~~~~~d------g~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~  138 (331)
                       .   .. +..++.++.+      +.+ +|++.....     |...+.+++|+|+++.|++++.++   .|++||+.+++
T Consensus       136 ~g~~~~~-~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~  214 (415)
T 2hqs_A          136 TGIKGAF-RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA  214 (415)
T ss_dssp             HSSCCCT-TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             cCCCCcC-CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence             0   00 2355555443      567 999976543     567899999999999999999875   99999999876


Q ss_pred             eeeeeeeecccceeEEEeeCCCCCcEEE-EEcCCCe--EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107          139 LEVLQQWKAHEFELWATSFDVHQPHMVY-TGSDDCK--FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      .   ..+..+...+.+++|+| +++.|+ +++.++.  |++||+++++. ..+..   |...+.+++|+| +++.|++++
T Consensus       215 ~---~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~---~~~~~~~~~~sp-dg~~l~~~s  285 (415)
T 2hqs_A          215 V---RQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD---GRSNNTEPTWFP-DSQNLAFTS  285 (415)
T ss_dssp             E---EEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EECCC---CSSCEEEEEECT-TSSEEEEEE
T ss_pred             E---EEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE-EeCcC---CCCcccceEECC-CCCEEEEEE
Confidence            4   34556777899999999 666565 7766654  99999998764 34443   788899999999 999888887


Q ss_pred             c-CC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec---CcEEEEEEcCcccceeEEeecCCccee
Q 020107          216 Y-DE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH---NGFAVVKVGGEKAEVLETYAKHGSLAY  289 (331)
Q Consensus       216 ~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~  289 (331)
                      . ++  .|.+||+.+. +. .. ...+...+..++|+|++ ..++.++.+   ..+.+|++..  ++. ..+..|. .+.
T Consensus       286 ~~~g~~~i~~~d~~~~-~~-~~-l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~--~~~-~~l~~~~-~~~  357 (415)
T 2hqs_A          286 DQAGRPQVYKVNINGG-AP-QR-ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLAT--GGV-QVLSSTF-LDE  357 (415)
T ss_dssp             CTTSSCEEEEEETTSS-CC-EE-CCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTT--CCE-EECCCSS-SCE
T ss_pred             CCCCCcEEEEEECCCC-CE-EE-EecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCC--CCE-EEecCCC-CcC
Confidence            6 45  6777788764 22 22 24567789999999997 555555554   2455666554  333 4555554 899


Q ss_pred             eeeecCCCCcccccccCcEEEEeecCCC---eEEEEcCCCcc
Q 020107          290 GADWQRGRSSLEGKRKNSLVATCSFYDR---LLRIWMPESDC  328 (331)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~---~i~iW~~~~~~  328 (331)
                      +++|+|++         ++|++++ .++   .|++||++.+.
T Consensus       358 ~~~~spdg---------~~l~~~s-~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          358 TPSLAPNG---------TMVIYSS-SQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEECTTS---------SEEEEEE-EETTEEEEEEEETTSCC
T ss_pred             CeEEcCCC---------CEEEEEE-cCCCccEEEEEECCCCc
Confidence            99999999         6888887 666   89999987654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=2.5e-26  Score=185.55  Aligned_cols=198  Identities=7%  Similarity=-0.035  Sum_probs=138.6

Q ss_pred             EEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcccCccEEEEEEcC---CCCeEEE
Q 020107           46 ISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSSMCLCLEWNP---SATSITV  122 (331)
Q Consensus        46 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~---~~~~l~~  122 (331)
                      +.+|++.+++ .+.....+|...|..++++|+    ++.+++-.             .|...+..++|++   +++.|++
T Consensus       137 ~~v~~l~~g~-lv~ss~~g~d~~V~~~~~s~d----G~~~~s~~-------------~~~~~v~~l~fs~~~g~~~~LaS  198 (356)
T 2w18_A          137 KAVLGLTKRR-LVSSSGTLSDQQVEVMTFAED----GGGKENQF-------------LMPPEETILTFAEVQGMQEALLG  198 (356)
T ss_dssp             EEEEEETTTE-EEEEESSSTTCEEEEEEECTT----SCEEEEEE-------------ECCCSSCEEEEEEEETSTTEEEE
T ss_pred             EEEEecCCCc-EEEecccCCCCcEEEEEECCC----Cceeeeec-------------cCCCceeeEEeeccCCCCceEEE
Confidence            6666665432 222223446666777777666    55555321             2556677888888   7799999


Q ss_pred             EecCCeEEEEEccccceeeeeeeeccc---ceeEEEeeCCCCCcEE------------EEEcCCCeEEEEEccCCCceee
Q 020107          123 GLSDGSVSIVSVVESQLEVLQQWKAHE---FELWATSFDVHQPHMV------------YTGSDDCKFSGWDIRESPFKLA  187 (331)
Q Consensus       123 ~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~  187 (331)
                      ++.|++|++||+++++.  ++.+.+|.   ..+.+++|+| ++.++            ++|+.|++|++||..+++....
T Consensus       199 gS~D~TIkIWDl~TGk~--l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v  275 (356)
T 2w18_A          199 TTIMNNIVIWNLKTGQL--LKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV  275 (356)
T ss_dssp             EETTSEEEEEETTTCCE--EEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred             ecCCCcEEEEECCCCcE--EEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence            99999999999999865  77777543   3577779999 66765            6688899999999999876554


Q ss_pred             eec--ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceE-EEEECCCCCCeEEEEEecCc
Q 020107          188 FQN--SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVW-RIKHHPFIPGLVLAACMHNG  264 (331)
Q Consensus       188 ~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~  264 (331)
                      +..  ..+|...+.+..+   ++.++++++.|++|+|||+.++ +.+.. +.+|...+. .++|+|++ .++++++.|+.
T Consensus       276 ~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tG-k~l~t-L~gH~~~vvs~vafSPDG-~~LaSGS~D~T  349 (356)
T 2w18_A          276 MLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLG-QCTAL-LPPVSDQHWSFVKWSGTD-SHLLAGQKDGN  349 (356)
T ss_dssp             EEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTC-SEEEE-ECCC--CCCCEEEECSSS-SEEEEECTTSC
T ss_pred             EEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCC-cEEEE-ecCCCCCeEEEEEECCCC-CEEEEEECCCc
Confidence            421  2346655544444   4679999999999999999985 55554 456776655 68999997 67778888889


Q ss_pred             EEEEEE
Q 020107          265 FAVVKV  270 (331)
Q Consensus       265 ~~~~~~  270 (331)
                      +++|++
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999985

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=6.3e-25  Score=183.02  Aligned_cols=266  Identities=9%  Similarity=0.056  Sum_probs=179.3

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC-ccE-EEecC--CCcc-------cCccEEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD-GGL-LRDIT--GEKI-------SSSMCLC  110 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-g~i-iw~~~--~~~~-------~~~~v~~  110 (331)
                      .++.|++|+++............+...+..++|+|+    +++|++++.+ +.+ +|++.  ++..       ....+..
T Consensus        13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd----g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD----KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH   88 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred             CCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCC----CCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcE
Confidence            599999999964221111222346678999999999    8888888776 788 99987  3332       1246788


Q ss_pred             EEEcCCCCeEEEEec-CCeEEEEEccccc-eeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEccC-CCcee
Q 020107          111 LEWNPSATSITVGLS-DGSVSIVSVVESQ-LEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIRE-SPFKL  186 (331)
Q Consensus       111 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~  186 (331)
                      ++|+|+++.|++++. ++.|.+||+..+. ......+.. ...+.+++|+| +++.+++++ .++.|++||+.+ ++...
T Consensus        89 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~  166 (343)
T 1ri6_A           89 ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVA  166 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceee
Confidence            999999998877665 8899999994322 122344443 34588999999 666666655 899999999987 54322


Q ss_pred             ee--ecccCCCcceEEEEEecCCCCEEEEE-ecCCeEEEEEecCCCCCce--eeeeec------CCceEEEEECCCCCCe
Q 020107          187 AF--QNSKIHKMGVCCIASIPSDSNTLLTG-SYDEYLRVWDVRSISKPVN--ETSVCL------GGGVWRIKHHPFIPGL  255 (331)
Q Consensus       187 ~~--~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~--~~~~~~------~~~v~~~~~~~~~~~~  255 (331)
                      ..  .........+..++|+| ++++++++ ..++.|.+||+......+.  ......      ...+..++|+|++ ..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg-~~  244 (343)
T 1ri6_A          167 QDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG-RH  244 (343)
T ss_dssp             EEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS-SE
T ss_pred             ecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC-CE
Confidence            11  11111345788999999 88866555 4889999999964222221  111111      2356689999997 44


Q ss_pred             EEEEE-ecCcEEEEEEcCc--ccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          256 VLAAC-MHNGFAVVKVGGE--KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       256 ~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      +++++ .++.+.+|++...  ..+.+..+..+.. +.+++|+|++         ++|++++..++.|.+|+++
T Consensus       245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg---------~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSG---------KYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTS---------SEEEEECTTTCEEEEEEEE
T ss_pred             EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCC---------CEEEEecCCCCeEEEEEEc
Confidence            55444 6788999999842  2345555555544 8899999998         4555554268999999554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.1e-24  Score=186.22  Aligned_cols=230  Identities=10%  Similarity=0.034  Sum_probs=177.1

Q ss_pred             CcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc---cE-EEecCCCcc-----cCccEEEEEEc
Q 020107           44 GSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG---GL-LRDITGEKI-----SSSMCLCLEWN  114 (331)
Q Consensus        44 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i-iw~~~~~~~-----~~~~v~~~~~~  114 (331)
                      +.|++||++...  ...+ ..|...|.+++|+|+    ++.|++++.++   .+ +|++.+++.     +...+.+++|+
T Consensus       159 ~~i~i~d~~g~~--~~~l-~~~~~~v~~~~~Spd----g~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~s  231 (415)
T 2hqs_A          159 YELRVSDYDGYN--QFVV-HRSPQPLMSPAWSPD----GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS  231 (415)
T ss_dssp             EEEEEEETTSCS--CEEE-EEESSCEEEEEECTT----SSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEEC
T ss_pred             ceEEEEcCCCCC--CEEE-eCCCCcceeeEEcCC----CCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEc
Confidence            799999998643  4444 578899999999999    89999998875   66 999987654     45678999999


Q ss_pred             CCCCeEE-EEecCCe--EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-CC--eEEEEEccCCCceeee
Q 020107          115 PSATSIT-VGLSDGS--VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-DC--KFSGWDIRESPFKLAF  188 (331)
Q Consensus       115 ~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~  188 (331)
                      |+++.|+ +++.++.  |++||+.+++.   ..+..|...+.+++|+| +++.|++++. ++  .|.+||+.+++. ..+
T Consensus       232 pdg~~la~~~~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l  306 (415)
T 2hqs_A          232 PDGSKLAFALSKTGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP-QRI  306 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCE---EECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC-EEC
T ss_pred             CCCCEEEEEEecCCCceEEEEECCCCCE---EeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE-EEE
Confidence            9999887 5665554  99999988653   45666788899999999 7777776665 45  677789887763 333


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC--
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN--  263 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--  263 (331)
                      ..   +...+.+++|+| ++++|++++.+   ..|++||+.+++ . .. +..+. .+.+++|+|++ ..++.++.++  
T Consensus       307 ~~---~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~-~-~~-l~~~~-~~~~~~~spdg-~~l~~~s~~~~~  377 (415)
T 2hqs_A          307 TW---EGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGG-V-QV-LSSTF-LDETPSLAPNG-TMVIYSSSQGMG  377 (415)
T ss_dssp             CC---SSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCC-E-EE-CCCSS-SCEEEEECTTS-SEEEEEEEETTE
T ss_pred             ec---CCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCC-E-EE-ecCCC-CcCCeEEcCCC-CEEEEEEcCCCc
Confidence            33   677899999999 99999888865   589999998753 2 22 23443 89999999997 5566666666  


Q ss_pred             -cEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107          264 -GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       264 -~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                       .+.+|++.   +.....+.+|.+.|.+++|+|..
T Consensus       378 ~~l~~~d~~---g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          378 SVLNLVSTD---GRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             EEEEEEETT---SCCEEECCCSSSEEEEEEECCCC
T ss_pred             cEEEEEECC---CCcEEEeeCCCCCCcCCcccccc
Confidence             34444443   56778889999999999999975

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=9.2e-25  Score=192.35  Aligned_cols=274  Identities=11%  Similarity=0.016  Sum_probs=205.0

Q ss_pred             CCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEec-
Q 020107           21 DSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDI-   98 (331)
Q Consensus        21 ~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~-   98 (331)
                      +|++.+++++.          .++.|.+||..+.+ .+..+..++.  +..++|+|+    +++|++++.|+.+ +|++ 
T Consensus       146 ~p~~~~~vs~~----------~d~~V~v~D~~t~~-~~~~i~~g~~--~~~v~~spd----g~~l~v~~~d~~V~v~D~~  208 (543)
T 1nir_A          146 DLPNLFSVTLR----------DAGQIALVDGDSKK-IVKVIDTGYA--VHISRMSAS----GRYLLVIGRDARIDMIDLW  208 (543)
T ss_dssp             CGGGEEEEEEG----------GGTEEEEEETTTCC-EEEEEECSTT--EEEEEECTT----SCEEEEEETTSEEEEEETT
T ss_pred             CCCCEEEEEEc----------CCCeEEEEECCCce-EEEEEecCcc--cceEEECCC----CCEEEEECCCCeEEEEECc
Confidence            34447777776          69999999998876 3444422333  889999999    9999999999999 9999 


Q ss_pred             -CCCcc-----cCccEEEEEEcC----CCCeEEEEec-CCeEEEEEccccceeeeeeeec----------c-cceeEEEe
Q 020107           99 -TGEKI-----SSSMCLCLEWNP----SATSITVGLS-DGSVSIVSVVESQLEVLQQWKA----------H-EFELWATS  156 (331)
Q Consensus        99 -~~~~~-----~~~~v~~~~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~----------~-~~~v~~~~  156 (331)
                       .+.+.     +...+..++|+|    +++++++++. +++|.+||..+.+.  +..+..          | ...+..+.
T Consensus       209 ~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~--~~~i~~~g~~~~~~~~~~~~~v~~i~  286 (543)
T 1nir_A          209 AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP--KQIVSTRGMTVDTQTYHPEPRVAAII  286 (543)
T ss_dssp             SSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE--EEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             CCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc--ceeecccCcccCccccccCCceEEEE
Confidence             66543     245578999999    9999999985 89999999988754  444443          2 23688999


Q ss_pred             eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceee
Q 020107          157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~  235 (331)
                      ++|.++.++++...++.|.+||..+.+....... . +...+..+.|+| ++++|++++ .+++|.+||..++ +.+..+
T Consensus       287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg-~l~~~i  362 (543)
T 1nir_A          287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-G-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDR-RLSALV  362 (543)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-E-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEE
T ss_pred             ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-c-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCC-eEEEee
Confidence            9996777888889999999999988765442222 1 566788999999 888766554 6899999999985 444432


Q ss_pred             ee---ecCCceEEEEECCCCCCeEEEEE--ecCcEEEEEEcCcc-----cceeEEeecCCcceeeeeecCCCCccccccc
Q 020107          236 SV---CLGGGVWRIKHHPFIPGLVLAAC--MHNGFAVVKVGGEK-----AEVLETYAKHGSLAYGADWQRGRSSLEGKRK  305 (331)
Q Consensus       236 ~~---~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  305 (331)
                      ..   +|.+....+ ++|++ +.+++++  .++.+.+|++....     .+.++++.+|...+..++++|++        
T Consensus       363 ~~g~~ph~g~g~~~-~~p~~-g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg--------  432 (543)
T 1nir_A          363 DVGKTPHPGRGANF-VHPKY-GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS--------  432 (543)
T ss_dssp             ECSSSBCCTTCEEE-EETTT-EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC--------
T ss_pred             ccCCCCCCCCCccc-CCCCC-ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC--------
Confidence            11   255444443 46775 4444544  46888999987622     68899999999889999999999        


Q ss_pred             CcEEEEeecC-------CCeEEEEcCCCccc
Q 020107          306 NSLVATCSFY-------DRLLRIWMPESDCL  329 (331)
Q Consensus       306 ~~~l~s~~~~-------d~~i~iW~~~~~~~  329 (331)
                       ++|++++ .       +++|.+||++++..
T Consensus       433 -~~l~v~~-~~~~~~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          433 -SHLYVDT-TFNPDARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             -CEEEECC-TTCSSHHHHTCEEEEETTCTTS
T ss_pred             -CcEEEec-CCCCCcccCceEEEEECCCCCC
Confidence             5777764 2       67999999998753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=1.6e-23  Score=175.16  Aligned_cols=283  Identities=12%  Similarity=0.101  Sum_probs=189.4

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEE-eEeeecCcEeEEEEcCCCCCCCCeEEEEcC---CccE-EEecC
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL-LYRMDTAGIFDIKWSPVGGNAGPFLAQADA---DGGL-LRDIT   99 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---dg~i-iw~~~   99 (331)
                      +.+++|+|..      ..++.|++|.++.....+.. ....+...+..++|+|+    ++ |++++.   ++.+ +|++.
T Consensus         3 ~~~~vg~y~~------~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd----g~-l~~~~~~~~~~~v~~~~~~   71 (347)
T 3hfq_A            3 ERILFGTYTK------KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK----DC-LYSVDKEDDEGGIAAWQID   71 (347)
T ss_dssp             EEEEEEECCS------SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT----CE-EEEEEEETTEEEEEEEEEE
T ss_pred             cEEEEEeccC------CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC----Ce-EEEEEecCCCceEEEEEec
Confidence            4677777532      23667999988764333333 22345667889999999    77 555543   5777 99986


Q ss_pred             CCcc--------cCccEEEEEEcCCCCeEEEEe-cCCeEEEEEcc-ccceeeeeeeec---------ccceeEEEeeCCC
Q 020107          100 GEKI--------SSSMCLCLEWNPSATSITVGL-SDGSVSIVSVV-ESQLEVLQQWKA---------HEFELWATSFDVH  160 (331)
Q Consensus       100 ~~~~--------~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~---------~~~~v~~~~~~~~  160 (331)
                      ++..        +...+..++|+|++++|++++ .++.|.+|++. .+....+..+..         ....+.+++|+| 
T Consensus        72 ~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-  150 (347)
T 3hfq_A           72 GQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-  150 (347)
T ss_dssp             TTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-
T ss_pred             CCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-
Confidence            5542        345667899999999988887 68999999995 334333443322         122478899999 


Q ss_pred             CCcEEEEEcCCCeEEEEEcc-CCCceeeeecccCCCcceEEEEEecCCCCEEEE-EecCCeEEEEEecCCCCCcee--ee
Q 020107          161 QPHMVYTGSDDCKFSGWDIR-ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT-GSYDEYLRVWDVRSISKPVNE--TS  236 (331)
Q Consensus       161 ~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~--~~  236 (331)
                      +++++++...++.|++||+. +++..............+..++|+| +++++++ +..++.|.+|++......+..  ..
T Consensus       151 dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~  229 (347)
T 3hfq_A          151 DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIV  229 (347)
T ss_dssp             TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred             CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeee
Confidence            65677777788999999998 4432222111111234678899999 8886555 567889999999852122111  11


Q ss_pred             eecC------CceEEEEECCCCCCeEEEEEecCcEEEEEEcCc-ccceeEEeecCCcceeeeeecCCCCcccccccCcEE
Q 020107          237 VCLG------GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE-KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLV  309 (331)
Q Consensus       237 ~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  309 (331)
                      ....      ..+..++|+|+++.++++...++.+.+|++... ..+.+..+..+...+..++|+|++         ++|
T Consensus       230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg---------~~l  300 (347)
T 3hfq_A          230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE---------AFV  300 (347)
T ss_dssp             ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS---------SEE
T ss_pred             eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC---------CEE
Confidence            1112      458899999997334445555788999999743 235566666667778999999999         577


Q ss_pred             EEeecCCCeEEEE--cCCCccc
Q 020107          310 ATCSFYDRLLRIW--MPESDCL  329 (331)
Q Consensus       310 ~s~~~~d~~i~iW--~~~~~~~  329 (331)
                      ++++..++.|.+|  |.+++.+
T Consensus       301 ~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          301 VVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             EEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEcCCCcEEEEEEeCCCCeE
Confidence            7666245999999  5556544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=9.1e-25  Score=200.60  Aligned_cols=276  Identities=9%  Similarity=0.009  Sum_probs=200.2

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCC-CC-----cEEEEeccCcccceEEeEeeec-----------------
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSR-NG-----SISLFNVNAEEKNLELLYRMDT-----------------   66 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~-~g-----~i~vw~~~~~~~~~~~~~~~~~-----------------   66 (331)
                      ..+..++|+|++   ++|++++          . ++     .|++||+.+++  ...+...+.                 
T Consensus        37 ~~~~~~~~SpdG---~~la~~~----------~~d~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (741)
T 2ecf_A           37 PTLMKPKVAPDG---SRVTFLR----------GKDSDRNQLDLWSYDIGSGQ--TRLLVDSKVVLPGTETLSDEEKARRE  101 (741)
T ss_dssp             CCCEEEEECTTS---SEEEEEE----------CCSSCTTEEEEEEEETTTCC--EEEEECGGGTC---------------
T ss_pred             CCCCCceEecCC---CEEEEEe----------ccCCCCcccEEEEEECCCCc--eeEccchhhcccccccccchhhhhhh
Confidence            357789998887   8999988          4 66     89999998875  333333332                 


Q ss_pred             -------CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC---cc-----cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           67 -------AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE---KI-----SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        67 -------~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~---~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                             ..|.+++|+|+    +++|++++. +.+ +|++.+.   ..     +...+..++|+|+|+.|+.++. +.|+
T Consensus       102 ~~~~~~~~~v~~~~~SpD----g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~  175 (741)
T 2ecf_A          102 RQRIAAMTGIVDYQWSPD----AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLW  175 (741)
T ss_dssp             -----CCEESCCCEECTT----SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEE
T ss_pred             hhhhccccCcceeEECCC----CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEE
Confidence                   23889999999    999998887 777 9999877   43     3567899999999999998874 6999


Q ss_pred             EEEccccceeeeeeeecccce----------------eEEEeeCCCCCcEEEEEcCCC----------------------
Q 020107          131 IVSVVESQLEVLQQWKAHEFE----------------LWATSFDVHQPHMVYTGSDDC----------------------  172 (331)
Q Consensus       131 i~d~~~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~~~~~dg----------------------  172 (331)
                      +||+.+++..  .....+...                +..++|+| +++.|++++.|+                      
T Consensus       176 ~~d~~~g~~~--~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~  252 (741)
T 2ecf_A          176 VIDLASGRQM--QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQR  252 (741)
T ss_dssp             EEETTTTEEE--ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred             EEecCCCCEE--EeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence            9999887542  222222221                47899999 778888877665                      


Q ss_pred             -----------eEEEEEccC-CCceeeeecccCCCcceEEEEEecCCCCEEEEEec-----CCeEEEEEecCCCCCceee
Q 020107          173 -----------KFSGWDIRE-SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-----DEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       173 -----------~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~  235 (331)
                                 .|.+||+.+ ++....... ..|...+..++| | +++.|++.+.     +..|++||+.+++ .... 
T Consensus       253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~~~-  327 (741)
T 2ecf_A          253 YPAAGDANVQVKLGVISPAEQAQTQWIDLG-KEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQ-QRVL-  327 (741)
T ss_dssp             CCBTTSCCCEEEEEEECSSTTCCCEEECCC-SCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCC-EEEE-
T ss_pred             cCCCCCCCCeeEEEEEECCCCCceEEecCC-CCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCc-eEEE-
Confidence                       789999988 764433221 237788999999 9 9998887764     5689999998853 2222 


Q ss_pred             eeecCC----ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeee-eecCCCCcccccccCcEEE
Q 020107          236 SVCLGG----GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGA-DWQRGRSSLEGKRKNSLVA  310 (331)
Q Consensus       236 ~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~l~  310 (331)
                      ...+..    .+..++|+|++ .+++++..++...+|.+... +. ...+..|...+..+ .|+|++.        .+++
T Consensus       328 ~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~-~~-~~~l~~~~~~v~~~~~~s~dg~--------~l~~  396 (741)
T 2ecf_A          328 AHETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSK-GK-AAALTHGNWSVDELLAVDEKAG--------LAYF  396 (741)
T ss_dssp             EEEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSS-SC-EEESCCSSSCEEEEEEEETTTT--------EEEE
T ss_pred             EEcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCC-CC-eeeeeecceEEEeEeEEeCCCC--------EEEE
Confidence            233332    45689999997 45555555566778887644 34 67788888888887 5999984        3444


Q ss_pred             EeecCCC--eEEEEcCCC
Q 020107          311 TCSFYDR--LLRIWMPES  326 (331)
Q Consensus       311 s~~~~d~--~i~iW~~~~  326 (331)
                      +++ .++  .++||+++.
T Consensus       397 ~~~-~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          397 RAG-IESARESQIYAVPL  413 (741)
T ss_dssp             EEC-SSCTTCBEEEEEET
T ss_pred             EEe-CCCCceEEEEEEEc
Confidence            555 566  899999753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=1.1e-23  Score=174.93  Aligned_cols=262  Identities=8%  Similarity=0.032  Sum_probs=177.6

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC-CccE-EEecCCCcc-------cCccEEEEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA-DGGL-LRDITGEKI-------SSSMCLCLE  112 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i-iw~~~~~~~-------~~~~v~~~~  112 (331)
                      .++.|++||+.+++  +......+...+ .++|+|+    ++++++++. ++.+ +|++.+.+.       +..+..+++
T Consensus        18 ~~~~v~~~d~~~~~--~~~~~~~~~~~~-~~~~s~d----g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~   90 (331)
T 3u4y_A           18 HLRRISFFSTDTLE--ILNQITLGYDFV-DTAITSD----CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVD   90 (331)
T ss_dssp             GGTEEEEEETTTCC--EEEEEECCCCEE-EEEECSS----SCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEE
T ss_pred             CCCeEEEEeCcccc--eeeeEEccCCcc-eEEEcCC----CCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceE
Confidence            68999999998875  333334455566 9999999    776655554 7788 999987764       123333499


Q ss_pred             EcCCCCeEEEEecCC---eEEEEEccccceeeeeeeecccceeEEEeeCCCCCc-EEEEEcCCCe-EEEEEccCCCceee
Q 020107          113 WNPSATSITVGLSDG---SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH-MVYTGSDDCK-FSGWDIRESPFKLA  187 (331)
Q Consensus       113 ~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~-i~i~d~~~~~~~~~  187 (331)
                      |+|++++++++..++   .|.+||+.+++.  +..+.. .....+++|+| +++ ++++...++. |.+|++........
T Consensus        91 ~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~--~~~~~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~  166 (331)
T 3u4y_A           91 ITPDDQFAVTVTGLNHPFNMQSYSFLKNKF--ISTIPI-PYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFD  166 (331)
T ss_dssp             ECTTSSEEEECCCSSSSCEEEEEETTTTEE--EEEEEC-CTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             ECCCCCEEEEecCCCCcccEEEEECCCCCe--EEEEEC-CCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEee
Confidence            999999999655553   899999988754  445543 33568999999 555 5555566688 99999986443211


Q ss_pred             e--ecccCCCcceEEEEEecCCCCEEE-EEecCCeEEEEEecCCCCC---ceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107          188 F--QNSKIHKMGVCCIASIPSDSNTLL-TGSYDEYLRVWDVRSISKP---VNETSVCLGGGVWRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       188 ~--~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  261 (331)
                      .  .. ......+..++|+| ++++++ ++..++.|++||+.++ +.   +..  ......+..++|+|+++.++++...
T Consensus       167 ~~~~~-~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~--~~~~~~~~~~~~spdg~~l~v~~~~  241 (331)
T 3u4y_A          167 TGQEF-ISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNP-ENITLLNA--VGTNNLPGTIVVSRDGSTVYVLTES  241 (331)
T ss_dssp             EEEEE-ECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSST-TSCEEEEE--EECSSCCCCEEECTTSSEEEEECSS
T ss_pred             cCCcc-ccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCC-cccceeee--ccCCCCCceEEECCCCCEEEEEEcC
Confidence            1  11 11355689999999 888554 4556899999999875 43   333  4456778899999997334444445


Q ss_pred             cCcEEEEEEcCcccceeEEeecC----Ccc---eeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          262 HNGFAVVKVGGEKAEVLETYAKH----GSL---AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~h----~~~---v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ++.+.+|++.....+.+..+..+    ...   ...++|+|++.        .+++++. .++.|.+||+++..
T Consensus       242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~v~~~-~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET--------KLFISAN-ISRELKVFTISGKV  306 (331)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS--------EEEEEET-TTTEEEEEETTSCE
T ss_pred             CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC--------EEEEecC-CCCcEEEEEecCCc
Confidence            66677777765322224444332    222   24589999994        3345555 67899999998653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=3.8e-24  Score=174.34  Aligned_cols=245  Identities=14%  Similarity=0.148  Sum_probs=178.4

Q ss_pred             CCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC-Ccc------c-CccEEEE
Q 020107           41 SRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG-EKI------S-SSMCLCL  111 (331)
Q Consensus        41 ~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~-~~~------~-~~~v~~~  111 (331)
                      ..++.|++||+.+.+  ...+ ..|...|.+++|+|+    +++|++++ ++.+ +|++.+ .+.      + ...+.++
T Consensus        19 ~~~~~i~~~d~~~~~--~~~~-~~~~~~v~~~~~spd----g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~   90 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRK--MRVV-WQTPELFEAPNWSPD----GKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDH   90 (297)
T ss_dssp             CCCEEEEEEETTTTE--EEEE-EEESSCCEEEEECTT----SSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred             CcceeEEEEeCCCCc--eeee-ccCCcceEeeEECCC----CCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccce
Confidence            368999999998875  3333 458889999999999    89999887 6677 999988 543      1 3567889


Q ss_pred             EEcCCCCeEEEEec--CCeEEEEEc--cccceeeeeeeecccceeEEEeeCCCCCcEEE-EEcCCCeEEEEEccCC-Cce
Q 020107          112 EWNPSATSITVGLS--DGSVSIVSV--VESQLEVLQQWKAHEFELWATSFDVHQPHMVY-TGSDDCKFSGWDIRES-PFK  185 (331)
Q Consensus       112 ~~~~~~~~l~~~~~--dg~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~-~~~  185 (331)
                      +|+|+++.|++++.  ++...+|.+  .+++   ...+..+. .+..++|+| +++.++ ++..++.+++|+++.. ...
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~-~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~  165 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT---PRLMTKNL-PSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVE  165 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCC---CEECCSSS-SEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCc---eEEeecCC-CccceEECC-CCCEEEEEECCCCceEEEEEECCCCcc
Confidence            99999999999983  345555554  4443   23343333 488999999 556554 7888999999997532 223


Q ss_pred             eeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec--
Q 020107          186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH--  262 (331)
Q Consensus       186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--  262 (331)
                      ..+..   +...+.++.|+| +++.|+.++ .++.+++|+++........ +..+...+..++|+|++ ..+++++.+  
T Consensus       166 ~~~~~---~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg-~~l~~~~~~~~  239 (297)
T 2ojh_A          166 TRLTH---GEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVER-ITDSAYGDWFPHPSPSG-DKVVFVSYDAD  239 (297)
T ss_dssp             EECCC---SSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEE-CCCCSEEEEEEEECTTS-SEEEEEEEETT
T ss_pred             eEccc---CCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEE-EecCCcccCCeEECCCC-CEEEEEEcCCC
Confidence            33333   778899999999 888777666 5899999999743344433 45677789999999997 555555544  


Q ss_pred             ---------CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107          263 ---------NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       263 ---------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                               ..+.+|++.......+..+.+|...+..++|+|++         ++|++++
T Consensus       240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg---------~~l~~~~  290 (297)
T 2ojh_A          240 VFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG---------DEFAYVR  290 (297)
T ss_dssp             CCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS---------SEEEEEE
T ss_pred             CCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCC---------CEEEEEE
Confidence                     34677776654344455566888899999999999         5777776

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=5.6e-23  Score=181.04  Aligned_cols=283  Identities=11%  Similarity=0.053  Sum_probs=202.7

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEec--cCcccceEEeEeeecCcEeEEEEcC----CCCCCCCe
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNV--NAEEKNLELLYRMDTAGIFDIKWSP----VGGNAGPF   84 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~--~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~   84 (331)
                      .+..++++|++   ++|++++          .++.|++||+  .+.+ .+..+ . +...+..++|+|    +    +++
T Consensus       180 ~~~~v~~spdg---~~l~v~~----------~d~~V~v~D~~~~t~~-~~~~i-~-~g~~p~~va~sp~~~~d----g~~  239 (543)
T 1nir_A          180 AVHISRMSASG---RYLLVIG----------RDARIDMIDLWAKEPT-KVAEI-K-IGIEARSVESSKFKGYE----DRY  239 (543)
T ss_dssp             TEEEEEECTTS---CEEEEEE----------TTSEEEEEETTSSSCE-EEEEE-E-CCSEEEEEEECCSTTCT----TTE
T ss_pred             ccceEEECCCC---CEEEEEC----------CCCeEEEEECcCCCCc-EEEEE-e-cCCCcceEEeCCCcCCC----CCE
Confidence            45677787776   8999998          6899999999  5543 33333 3 455689999999    8    889


Q ss_pred             EEEEcC-CccE-EEecCCCcc----------------c-CccEEEEEEcCCCCe-EEEEecCCeEEEEEccccceeeeee
Q 020107           85 LAQADA-DGGL-LRDITGEKI----------------S-SSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQ  144 (331)
Q Consensus        85 l~~~~~-dg~i-iw~~~~~~~----------------~-~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~  144 (331)
                      |++++. ++.+ +||..+.+.                | ...+.++.++|+++. +++...++.|.+||+.+.+...+..
T Consensus       240 l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~  319 (543)
T 1nir_A          240 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS  319 (543)
T ss_dssp             EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEE
T ss_pred             EEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEE
Confidence            998885 7888 998876543                1 126788999998776 5556679999999998765422334


Q ss_pred             eecccceeEEEeeCCCCCcEE-EEEcCCCeEEEEEccCCCceeeeec-ccCCCcceEEEEEecCCCCEEEEEe-cCCeEE
Q 020107          145 WKAHEFELWATSFDVHQPHMV-YTGSDDCKFSGWDIRESPFKLAFQN-SKIHKMGVCCIASIPSDSNTLLTGS-YDEYLR  221 (331)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~  221 (331)
                      +. +...+..++|+| +++++ +++..+++|.+||+.+++....+.. ..+|......+ ++|..+.+++++. .|++|.
T Consensus       320 i~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~  396 (543)
T 1nir_A          320 IG-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSIS  396 (543)
T ss_dssp             EE-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEE
T ss_pred             ec-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEE
Confidence            43 556688999999 66654 5556789999999999987766653 12255444333 4773367777775 589999


Q ss_pred             EEEecCCC------CCceeeeeecCCceEEEEECCCCCCeEEEEE-------ecCcEEEEEEcCccccee-EEe------
Q 020107          222 VWDVRSIS------KPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-------MHNGFAVVKVGGEKAEVL-ETY------  281 (331)
Q Consensus       222 iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~------  281 (331)
                      +||+.+.+      +.+.. +..|.+.+..++++|++ ..+.+..       .++.+.+|++...+  .. ..+      
T Consensus       397 v~d~~~~~~~~~~~~~v~~-l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~--~~~~~~~v~~~~  472 (543)
T 1nir_A          397 LIGTDPKNHPQYAWKKVAE-LQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLD--AKYQVLPIAEWA  472 (543)
T ss_dssp             EEECCTTTCTTTBTSEEEE-EECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTT--SCCEEECHHHHH
T ss_pred             EEEeCCCCCchhcCeEEEE-EEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCCCC--CCeEEeechhhc
Confidence            99998721      33333 56777888999999997 4444443       26799999998753  33 333      


Q ss_pred             --ecCCcceeeeeecCCCCcccccccCcEEEEee----cCCCeEEEEcCCCccc
Q 020107          282 --AKHGSLAYGADWQRGRSSLEGKRKNSLVATCS----FYDRLLRIWMPESDCL  329 (331)
Q Consensus       282 --~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~----~~d~~i~iW~~~~~~~  329 (331)
                        ..+...+..++|+|++.         .++.+.    ..|+.|.|||.+++.+
T Consensus       473 ~~~~~~~~~~~~~~~~~g~---------~~~~s~~~~~~~~~~i~v~D~~t~~~  517 (543)
T 1nir_A          473 DLGEGAKRVVQPEYNKRGD---------EVWFSVWNGKNDSSALVVVDDKTLKL  517 (543)
T ss_dssp             CCCSSCCEEEEEEECSSSS---------EEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             ccCCCCCceEeccCCCCCC---------EEEEEeecCCCCCCeEEEEECCCceE
Confidence              35678899999999994         555432    1479999999998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.4e-24  Score=198.78  Aligned_cols=282  Identities=8%  Similarity=0.039  Sum_probs=191.6

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC---cEeEEEEcCCCCCCCCeEE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA---GIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~   86 (331)
                      ....+++|+|++   ++++++           .+|.|++||+.+++  ...+...|..   .|.+++|||+    +++|+
T Consensus        17 ~~~~~~~~spdg---~~~~~~-----------~dg~i~~~d~~~g~--~~~~~~~~~~~~~~v~~~~~SpD----g~~l~   76 (723)
T 1xfd_A           17 IHDPEAKWISDT---EFIYRE-----------QKGTVRLWNVETNT--STVLIEGKKIESLRAIRYEISPD----REYAL   76 (723)
T ss_dssp             CCCCCCCBSSSS---CBCCCC-----------SSSCEEEBCGGGCC--CEEEECTTTTTTTTCSEEEECTT----SSEEE
T ss_pred             ccccccEEcCCC---cEEEEe-----------CCCCEEEEECCCCc--EEEEeccccccccccceEEECCC----CCEEE
Confidence            456788888876   677663           58999999999876  3444455554   4999999999    99999


Q ss_pred             EEcCC---------ccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc
Q 020107           87 QADAD---------GGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH  148 (331)
Q Consensus        87 ~~~~d---------g~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  148 (331)
                      +++.+         +.+ +|++.+++.        +...+..++|+|+|+.|+.++. +.|++||+.+++..  .....+
T Consensus        77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~--~~~~~~  153 (723)
T 1xfd_A           77 FSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAI--RVVSTG  153 (723)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCE--EEECCC
T ss_pred             EEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceE--EEecCC
Confidence            98765         555 999987653        1223778999999999999886 79999999887542  222222


Q ss_pred             cc------------------eeEEEeeCCCCCcEEEEEcCCC----------------------------------eEEE
Q 020107          149 EF------------------ELWATSFDVHQPHMVYTGSDDC----------------------------------KFSG  176 (331)
Q Consensus       149 ~~------------------~v~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i  176 (331)
                      ..                  .+.+++|+| +++.|++++.++                                  .|++
T Consensus       154 ~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~  232 (723)
T 1xfd_A          154 KEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV  232 (723)
T ss_dssp             BTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred             CCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence            22                  237899999 778888776543                                  7999


Q ss_pred             EEccCCCceeeeecc---cCCCcceEEEEEecCCCCEEEEEec----CCeEEEEEecCCCCCceeeeeecCCceE----E
Q 020107          177 WDIRESPFKLAFQNS---KIHKMGVCCIASIPSDSNTLLTGSY----DEYLRVWDVRSISKPVNETSVCLGGGVW----R  245 (331)
Q Consensus       177 ~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~v~----~  245 (331)
                      ||+.+++....+...   ..+...+..++|+| +++++++...    +..|++||+.++ +........+.+.+.    .
T Consensus       233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~  310 (723)
T 1xfd_A          233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEE  310 (723)
T ss_dssp             EESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCC
T ss_pred             EECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCC
Confidence            999987754444430   11367899999999 9988877653    357999999875 333321233444443    7


Q ss_pred             EEECCCCCCeEEEEEe-cC----cEEEEEEc-Ccccc--eeEEeecCCcceee-eeecCCCCcccccccCcEEEEeecCC
Q 020107          246 IKHHPFIPGLVLAACM-HN----GFAVVKVG-GEKAE--VLETYAKHGSLAYG-ADWQRGRSSLEGKRKNSLVATCSFYD  316 (331)
Q Consensus       246 ~~~~~~~~~~~~~~~~-~~----~~~~~~~~-~~~~~--~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~~d  316 (331)
                      ++|+|+++.++++++. ++    ...+|.+. ...+.  ....+..+...+.. ++|+|++         +.|+..+..+
T Consensus       311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg---------~~l~~~~~~~  381 (723)
T 1xfd_A          311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG---------NKIYFLSTED  381 (723)
T ss_dssp             CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT---------TEEEEEESSS
T ss_pred             ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC---------CEEEEEEcCC
Confidence            8999998555554343 33    34455554 22222  13444433344444 6999999         5776555144


Q ss_pred             --CeEEEEcCCC
Q 020107          317 --RLLRIWMPES  326 (331)
Q Consensus       317 --~~i~iW~~~~  326 (331)
                        +.+++|+++.
T Consensus       382 ~~~~~~l~~~~~  393 (723)
T 1xfd_A          382 LPRRRQLYSANT  393 (723)
T ss_dssp             CTTCCEEEEECS
T ss_pred             CCcceEEEEEeC
Confidence              8899999853

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=3e-23  Score=189.48  Aligned_cols=281  Identities=12%  Similarity=0.065  Sum_probs=197.2

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+.+++|+|+    ..++.+.           ++.|++||+.+++  ...+ ..+...+.+++|+|+    ++.|+.+ 
T Consensus        82 ~~v~~~~~spd----~~~~~~~-----------~~~i~~~d~~~~~--~~~l-~~~~~~~~~~~~Spd----G~~la~~-  138 (706)
T 2z3z_A           82 FPSFRTLDAGR----GLVVLFT-----------QGGLVGFDMLARK--VTYL-FDTNEETASLDFSPV----GDRVAYV-  138 (706)
T ss_dssp             CCCEEEEETTT----TEEEEEE-----------TTEEEEEETTTTE--EEEE-ECCTTCCTTCEECTT----SSEEEEE-
T ss_pred             cCceeEEECCC----CeEEEEE-----------CCEEEEEECCCCc--eEEc-cCCcccccCCcCCCC----CCEEEEE-
Confidence            35778888876    3555555           7999999998764  3333 346677999999999    8899885 


Q ss_pred             CCccE-EEecCC-----Cccc------Ccc--------------EEEEEEcCCCCeEEEEe-------------------
Q 020107           90 ADGGL-LRDITG-----EKIS------SSM--------------CLCLEWNPSATSITVGL-------------------  124 (331)
Q Consensus        90 ~dg~i-iw~~~~-----~~~~------~~~--------------v~~~~~~~~~~~l~~~~-------------------  124 (331)
                      .++.+ +|++.+     ++..      ...              +.++.|+|||+.|++++                   
T Consensus       139 ~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~  218 (706)
T 2z3z_A          139 RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEA  218 (706)
T ss_dssp             ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSC
T ss_pred             ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence            67888 999987     5431      121              47899999999999987                   


Q ss_pred             --------------cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCCce
Q 020107          125 --------------SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESPFK  185 (331)
Q Consensus       125 --------------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  185 (331)
                                    .+..|.+||+.+++...+.....|...+..++|+| +++.|++++.++     .|++||+.+++..
T Consensus       219 ~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~  297 (706)
T 2z3z_A          219 ESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFV  297 (706)
T ss_dssp             EEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred             ceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence                          45789999999876433332235667899999999 778888877665     8999999988433


Q ss_pred             eeeecccCCCc---ceEEEEEec-CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEE-EEECCCCCCeEEEEE
Q 020107          186 LAFQNSKIHKM---GVCCIASIP-SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWR-IKHHPFIPGLVLAAC  260 (331)
Q Consensus       186 ~~~~~~~~~~~---~v~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~  260 (331)
                      ..+.. ..+..   .+.++.|+| .++++++++..|+.+++|++......+.. +..+...+.. ++|+|++ ..++.++
T Consensus       298 ~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-l~~~~~~v~~~~~~spdg-~~l~~~~  374 (706)
T 2z3z_A          298 RTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-VTKGEWEVTNFAGFDPKG-TRLYFES  374 (706)
T ss_dssp             EEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE-CCCSSSCEEEEEEECTTS-SEEEEEE
T ss_pred             eEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe-cCCCCeEEEeeeEEcCCC-CEEEEEe
Confidence            33322 11222   346789998 25668899999999999998732333333 3556667876 8999997 4555555


Q ss_pred             ecCc---EEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC---CeEEEEcCCCcc
Q 020107          261 MHNG---FAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD---RLLRIWMPESDC  328 (331)
Q Consensus       261 ~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d---~~i~iW~~~~~~  328 (331)
                      .+++   ..+|.+....++ ...+. |...+.+++|+|++         ++|+.....+   +.|++||++++.
T Consensus       375 ~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg---------~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          375 TEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDG---------SAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTS---------SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             cCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCC---------CEEEEEecCCCCCcEEEEEECCCCe
Confidence            5442   567766544333 33443 66778999999999         4666553133   569999998764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1.2e-22  Score=168.70  Aligned_cols=261  Identities=10%  Similarity=0.015  Sum_probs=184.9

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC-cEeEEEEcCCCCCCCCeE-EEEcCCccE-EEecCCC
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA-GIFDIKWSPVGGNAGPFL-AQADADGGL-LRDITGE  101 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~l-~~~~~dg~i-iw~~~~~  101 (331)
                      ++|++++          .++.|++||+.+.+ .+..+..++.. .+..++|+|+    ++.+ +++..++.+ +|++.+.
T Consensus         2 ~~~v~~~----------~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~s~d----g~~l~v~~~~~~~v~~~d~~~~   66 (337)
T 1pby_B            2 DYILAPA----------RPDKLVVIDTEKMA-VDKVITIADAGPTPMVPMVAPG----GRIAYATVNKSESLVKIDLVTG   66 (337)
T ss_dssp             EEEEEEE----------TTTEEEEEETTTTE-EEEEEECTTCTTCCCCEEECTT----SSEEEEEETTTTEEEEEETTTC
T ss_pred             cEEEEcC----------CCCeEEEEECCCCc-EEEEEEcCCCCCCccceEEcCC----CCEEEEEeCCCCeEEEEECCCC
Confidence            5778887          79999999998865 33333222222 4889999999    7655 566667888 9998775


Q ss_pred             ccc-----Cc------cEEEEEEcCCCCeEEEEe------------cCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107          102 KIS-----SS------MCLCLEWNPSATSITVGL------------SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus       102 ~~~-----~~------~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  158 (331)
                      +..     ..      .+..++|+|+++.++++.            .++.|.+||+.+++.  +..+.. ...+.+++|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~~~~~-~~~~~~~~~s  143 (337)
T 1pby_B           67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAFEA-PRQITMLAWA  143 (337)
T ss_dssp             CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEEEC-CSSCCCEEEC
T ss_pred             CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE--EEEEeC-CCCcceeEEC
Confidence            531     11      566899999999998886            579999999987654  444443 4457889999


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CC-------------------
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DE-------------------  218 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~-------------------  218 (331)
                      | +++.++++  ++.|.+||+.+++....+.. ..+..+   +.|+| ++..++..+. ++                   
T Consensus       144 ~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~-~~~~~~---~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (337)
T 1pby_B          144 R-DGSKLYGL--GRDLHVMDPEAGTLVEDKPI-QSWEAE---TYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPT  215 (337)
T ss_dssp             T-TSSCEEEE--SSSEEEEETTTTEEEEEECS-TTTTTT---TBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred             C-CCCEEEEe--CCeEEEEECCCCcEeeeeec-cccCCC---ceeCC-CccEEeeeccCCCceeeeeecccccccccccc
Confidence            9 66767666  68899999998876555543 111122   36788 6665544432 22                   


Q ss_pred             ----eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107          219 ----YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQ  294 (331)
Q Consensus       219 ----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  294 (331)
                          .|.+||+.+.+.. ......+...+..++|+|++ ..++++  ++.+.+|++..  ++.+..+.. ...+.+++|+
T Consensus       216 ~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~--~~~~~~~~~-~~~~~~~~~s  288 (337)
T 1pby_B          216 AYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEK--NASIKRVPL-PHSYYSVNVS  288 (337)
T ss_dssp             GEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTT--TEEEEEEEC-SSCCCEEEEC
T ss_pred             ccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCC--CcCcceecC-CCceeeEEEC
Confidence                4689999885432 33245666788899999997 444444  68888888765  455666553 3467899999


Q ss_pred             CCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          295 RGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       295 ~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      |++         ++|++++ .++.|++||++++.
T Consensus       289 ~dg---------~~l~~~~-~~~~i~v~d~~~~~  312 (337)
T 1pby_B          289 TDG---------STVWLGG-ALGDLAAYDAETLE  312 (337)
T ss_dssp             TTS---------CEEEEES-BSSEEEEEETTTCC
T ss_pred             CCC---------CEEEEEc-CCCcEEEEECcCCc
Confidence            998         5777778 89999999998764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=4.5e-23  Score=189.39  Aligned_cols=276  Identities=14%  Similarity=0.157  Sum_probs=198.5

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      +.+++|+|++   ++|++++           ++.|++||+.++.. ....+ ..|...+..++|+|+    +++|+.++.
T Consensus       111 v~~~~~SpDg---~~l~~~~-----------~~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPD----G~~la~~~~  171 (741)
T 2ecf_A          111 IVDYQWSPDA---QRLLFPL-----------GGELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPK----GGFVSFIRG  171 (741)
T ss_dssp             SCCCEECTTS---SEEEEEE-----------TTEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTT----SSEEEEEET
T ss_pred             cceeEECCCC---CEEEEEe-----------CCcEEEEECCCCCcceEEEc-ccCCcccccccCCCC----CCEEEEEeC
Confidence            5678888877   8999998           59999999987610 12222 456778999999999    999998875


Q ss_pred             CccE-EEecCCCccc------Ccc----------------EEEEEEcCCCCeEEEEecCC--------------------
Q 020107           91 DGGL-LRDITGEKIS------SSM----------------CLCLEWNPSATSITVGLSDG--------------------  127 (331)
Q Consensus        91 dg~i-iw~~~~~~~~------~~~----------------v~~~~~~~~~~~l~~~~~dg--------------------  127 (331)
                       +.+ +|++.+++..      ...                +.+++|+|||+.|++++.|+                    
T Consensus       172 -~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~  250 (741)
T 2ecf_A          172 -RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE  250 (741)
T ss_dssp             -TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred             -CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence             466 9998875431      111                47799999999999988765                    


Q ss_pred             -------------eEEEEEccc-cceeeeeeeecccceeEEEeeCCCCCcEEEEEc-----CCCeEEEEEccCCCceeee
Q 020107          128 -------------SVSIVSVVE-SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-----DDCKFSGWDIRESPFKLAF  188 (331)
Q Consensus       128 -------------~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~  188 (331)
                                   .|.+||+.+ ++...+.....|...+..++| | +++.|++++     .+..|++||+.+++....+
T Consensus       251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~  328 (741)
T 2ecf_A          251 QRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA  328 (741)
T ss_dssp             EECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred             eecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence                         788999987 764322211247788999999 9 777777654     3578999999998866655


Q ss_pred             ecccCCCc----ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEE-EECCCCCCeEEEEEecC
Q 020107          189 QNSKIHKM----GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRI-KHHPFIPGLVLAACMHN  263 (331)
Q Consensus       189 ~~~~~~~~----~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~  263 (331)
                      ..   +..    .+..+.|+| +++++++++.|+.++||.+..... ... +..+...+..+ .|+|++ ..++.++.++
T Consensus       329 ~~---~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~-~~~-l~~~~~~v~~~~~~s~dg-~~l~~~~~~~  401 (741)
T 2ecf_A          329 HE---TSPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYRIDSKGK-AAA-LTHGNWSVDELLAVDEKA-GLAYFRAGIE  401 (741)
T ss_dssp             EE---ECSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEEECSSSC-EEE-SCCSSSCEEEEEEEETTT-TEEEEEECSS
T ss_pred             Ec---CCCCcCCcCCceEECC-CCeEEEEecCCCccEEEEEcCCCC-eee-eeecceEEEeEeEEeCCC-CEEEEEEeCC
Confidence            54   322    456889999 888999999999888988874333 332 45677788887 599997 4555555444


Q ss_pred             ---cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC---CeEEEEcCCCc
Q 020107          264 ---GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD---RLLRIWMPESD  327 (331)
Q Consensus       264 ---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d---~~i~iW~~~~~  327 (331)
                         .+++|.+... +.....+.. ...+..++|+|++.         +|+......   ..+.+|+.+.+
T Consensus       402 ~~~~~~l~~~~~~-g~~~~~l~~-~~~~~~~~~spdg~---------~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          402 SARESQIYAVPLQ-GGQPQRLSK-APGMHSASFARNAS---------VYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             CTTCBEEEEEETT-CCCCEECCC-SCSEEEEEECTTSS---------EEEEEEEETTEEEEEEEEETTSC
T ss_pred             CCceEEEEEEEcC-CCCeeeccc-CCCceEEEECCCCC---------EEEEEecCCCCCCeEEEEEcCCC
Confidence               6789988654 344555655 56788999999994         555443133   47888887554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=3.6e-21  Score=160.96  Aligned_cols=270  Identities=9%  Similarity=0.032  Sum_probs=189.8

Q ss_pred             eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107            5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   84 (331)
                      ...+...+..++++|.+   +++++++.....   ...++.|.+||..+.+ ....+ . ....+..++|+|+    ++.
T Consensus        36 ~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~---~~~~~~v~~~d~~~~~-~~~~~-~-~~~~~~~~~~s~d----g~~  102 (353)
T 3vgz_A           36 RKAVGKGAYEMAYSQQE---NALWLATSQSRK---LDKGGVVYRLDPVTLE-VTQAI-H-NDLKPFGATINNT----TQT  102 (353)
T ss_dssp             EEEEESSEEEEEEETTT---TEEEEEECCCTT---TEESEEEEEECTTTCC-EEEEE-E-ESSCCCSEEEETT----TTE
T ss_pred             hhhhccCccceEECCCC---CEEEEEcCCCcC---CCCCccEEEEcCCCCe-EEEEE-e-cCCCcceEEECCC----CCE
Confidence            34556678889999976   667666521000   0016789999998875 33333 2 2345789999999    774


Q ss_pred             -EEEEcCCccE-EEecCCCccc------Cc---------cEEEEEEcCCCCeEEEEe--cCCeEEEEEccccceeeeeee
Q 020107           85 -LAQADADGGL-LRDITGEKIS------SS---------MCLCLEWNPSATSITVGL--SDGSVSIVSVVESQLEVLQQW  145 (331)
Q Consensus        85 -l~~~~~dg~i-iw~~~~~~~~------~~---------~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~  145 (331)
                       +++...++.+ +|+..+.+..      ..         .+.++.|+|+++.++++.  .++.|.+||+.+++.  +..+
T Consensus       103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~--~~~~  180 (353)
T 3vgz_A          103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL--KTAI  180 (353)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE--EEEE
T ss_pred             EEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce--EEEe
Confidence             4555667888 9998776541      11         268899999999887776  478999999988754  5555


Q ss_pred             ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc-cCCCcceEEEEEecCCCCEEEEEe-cCCeEEEE
Q 020107          146 KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS-KIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVW  223 (331)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iw  223 (331)
                      ..+...+..++|+| +++.+++++.++.|.+||+.+++....+... .++...+..++|+| +++++++++ .++.|.+|
T Consensus       181 ~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~  258 (353)
T 3vgz_A          181 QNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVV  258 (353)
T ss_dssp             CCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEE
T ss_pred             cCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEE
Confidence            54555688999998 7788888888999999999988766655541 12455688999999 887666665 45999999


Q ss_pred             EecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107          224 DVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  298 (331)
                      |+.++ +.+..  ..... ...++|+|+++.++++...++.+.+|+...  ++.+..+... ..+.+++|+|++.
T Consensus       259 d~~~~-~~~~~--~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~-~~~~~~~~s~dg~  326 (353)
T 3vgz_A          259 DTRNG-NILAK--VAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKS--YKVVKTFDTP-THPNSLALSADGK  326 (353)
T ss_dssp             ETTTC-CEEEE--EECSS-CCCEEEETTTTEEEEEETTTTEEEEEETTT--TEEEEEEECC-SEEEEEEECTTSC
T ss_pred             ECCCC-cEEEE--EEcCC-CceEEECCCCCEEEEEECCCCeEEEEECCC--CeEEEEEecC-CCCCeEEEcCCCC
Confidence            99875 44443  22222 367999999833444444577788887655  4666666643 4678999999983

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.3e-22  Score=185.34  Aligned_cols=275  Identities=9%  Similarity=0.011  Sum_probs=186.8

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccce-EEeEeee----------------cCcEeEEEE
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNL-ELLYRMD----------------TAGIFDIKW   74 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~-~~~~~~~----------------~~~v~~~~~   74 (331)
                      +..+.|.  +   +.++.+.          .++ | +||+.+++. . ..+...+                ...|.+++|
T Consensus        28 ~~~~~w~--g---~~~~~~~----------~~~-i-~~d~~tg~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~   89 (706)
T 2z3z_A           28 VVGLQWM--G---DNYVFIE----------GDD-L-VFNKANGKS-AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD   89 (706)
T ss_dssp             CTTCEEE--T---TEEEEEE----------TTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEE
T ss_pred             CCCCcCc--C---CeEEEEe----------CCc-E-EEECCCCcE-eeEEeechhHhhhhccchhccccccccCceeEEE
Confidence            4557787  3   4555555          466 8 999988762 1 3332221                146999999


Q ss_pred             cCCCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-----cceeeee
Q 020107           75 SPVGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-----SQLEVLQ  143 (331)
Q Consensus        75 ~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~  143 (331)
                      +|+    +.++++.  ++.+ +|++.+.+.     +...+.+++|+|+|+.|+++ .++.|++|++.+     ++..  .
T Consensus        90 spd----~~~~~~~--~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~--~  160 (706)
T 2z3z_A           90 AGR----GLVVLFT--QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI--A  160 (706)
T ss_dssp             TTT----TEEEEEE--TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE--E
T ss_pred             CCC----CeEEEEE--CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE--E
Confidence            999    5566654  4788 999987654     34567789999999999885 679999999987     6542  2


Q ss_pred             eeecccce--------------eEEEeeCCCCCcEEEEEc---------------------------------CCCeEEE
Q 020107          144 QWKAHEFE--------------LWATSFDVHQPHMVYTGS---------------------------------DDCKFSG  176 (331)
Q Consensus       144 ~~~~~~~~--------------v~~~~~~~~~~~~l~~~~---------------------------------~dg~i~i  176 (331)
                      ....+...              +.+++|+| +++.|++++                                 .+..|++
T Consensus       161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~  239 (706)
T 2z3z_A          161 VTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI  239 (706)
T ss_dssp             SCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred             eccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence            22222222              47899999 788888876                                 4468999


Q ss_pred             EEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC-----eEEEEEecCCCCCceeee-eecCC---ceEEEE
Q 020107          177 WDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-----YLRVWDVRSISKPVNETS-VCLGG---GVWRIK  247 (331)
Q Consensus       177 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~-~~~~~---~v~~~~  247 (331)
                      ||+.+++....... ..|...+.+++|+| +++.|++++.++     .|++||+.+++. ..... ..+..   .+..++
T Consensus       240 ~d~~~~~~~~~~~~-~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~  316 (706)
T 2z3z_A          240 YHLATGKTVYLQTG-EPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKHYVEPLHPLT  316 (706)
T ss_dssp             EETTTTEEEECCCC-SCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSSCCCCCSCCE
T ss_pred             EECCCCceEeeccC-CCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCCeECccCCce
Confidence            99998764433322 23677899999999 999999988776     899999987522 22212 22222   246789


Q ss_pred             ECC--CCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceee-eeecCCCCcccccccCcEEEEeecCCC----eEE
Q 020107          248 HHP--FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG-ADWQRGRSSLEGKRKNSLVATCSFYDR----LLR  320 (331)
Q Consensus       248 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~~d~----~i~  320 (331)
                      |+|  ++ .+++++..++.+++|.+... +..+..+..|...+.. ++|+|++.        .++++++ .++    .|.
T Consensus       317 ~sp~~dg-~~l~~~~~~g~~~l~~~~~~-~~~~~~l~~~~~~v~~~~~~spdg~--------~l~~~~~-~~~~~~~~l~  385 (706)
T 2z3z_A          317 FLPGSNN-QFIWQSRRDGWNHLYLYDTT-GRLIRQVTKGEWEVTNFAGFDPKGT--------RLYFEST-EASPLERHFY  385 (706)
T ss_dssp             ECTTCSS-EEEEEECTTSSCEEEEEETT-SCEEEECCCSSSCEEEEEEECTTSS--------EEEEEES-SSCTTCBEEE
T ss_pred             eecCCCC-EEEEEEccCCccEEEEEECC-CCEEEecCCCCeEEEeeeEEcCCCC--------EEEEEec-CCCCceEEEE
Confidence            999  86 45555555666788888743 5667777778777877 79999984        3444444 555    777


Q ss_pred             EEcCCCcc
Q 020107          321 IWMPESDC  328 (331)
Q Consensus       321 iW~~~~~~  328 (331)
                      .|+++++.
T Consensus       386 ~~d~~~~~  393 (706)
T 2z3z_A          386 CIDIKGGK  393 (706)
T ss_dssp             EEETTCCC
T ss_pred             EEEcCCCC
Confidence            77877654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=4.5e-23  Score=176.93  Aligned_cols=195  Identities=10%  Similarity=-0.013  Sum_probs=146.8

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCC-----------c----------ccCccEEEEEEcCCCCeEE---
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGE-----------K----------ISSSMCLCLEWNPSATSIT---  121 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~-----------~----------~~~~~v~~~~~~~~~~~l~---  121 (331)
                      ...++.++++++    +.++++++.++..+|+....           .          .+...|.+++|+|++++|+   
T Consensus        36 ~~~~n~lavs~~----~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~  111 (434)
T 2oit_A           36 KERSSLLAVSNK----YGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACM  111 (434)
T ss_dssp             CSCCBCEEEETT----TTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred             CCCccEEEEecC----CCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEE
Confidence            345889999999    88999999998446553210           0          0234699999999999999   


Q ss_pred             -EEecCCeEEEEEcccc-----ce----eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc
Q 020107          122 -VGLSDGSVSIVSVVES-----QL----EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS  191 (331)
Q Consensus       122 -~~~~dg~i~i~d~~~~-----~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  191 (331)
                       +|+.|+.|++||+.+.     +.    ..+..+.+|...|.+++|+|.++++|++++.||.|++||++++........ 
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-  190 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-  190 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-
T ss_pred             eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-
Confidence             7788999999999764     11    123456678999999999996589999999999999999998754333333 


Q ss_pred             cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee-------cCCceEEEEECCCCCCeEEEE-EecC
Q 020107          192 KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC-------LGGGVWRIKHHPFIPGLVLAA-CMHN  263 (331)
Q Consensus       192 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~-~~~~  263 (331)
                        |...|++++|+| ++++|++|+.||.|++||++ + ..... ...       |...|.+++|+++  ..++++ +..+
T Consensus       191 --~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~-~~~~~-~~~~~~~~~~~~~~v~~v~w~~~--~~~l~~~~~~d  262 (434)
T 2oit_A          191 --STVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-L-QEKKV-IPCPPFYESDHPVRVLDVLWIGT--YVFAIVYAAAD  262 (434)
T ss_dssp             --GGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-C-CEEEE-ECCCTTCCTTSCEEEEEEEEEET--TEEEEEEEETT
T ss_pred             --CCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-C-ccccc-ccCCcccCCCCceeEEEEEEecC--ceEEEEEccCC
Confidence              888999999999 89999999999999999998 2 22222 111       2348999999997  444433 3222


Q ss_pred             -------cEEEEEEcCc
Q 020107          264 -------GFAVVKVGGE  273 (331)
Q Consensus       264 -------~~~~~~~~~~  273 (331)
                             .+++|++...
T Consensus       263 g~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          263 GTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCSSSCCEEEEEECCCT
T ss_pred             CccCCCCceEEEEeccC
Confidence                   2778888764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=2.7e-22  Score=163.36  Aligned_cols=229  Identities=16%  Similarity=0.117  Sum_probs=166.9

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccC-cccceEEeEeee-cCcEeEEEEcCCCCCCCCeE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNA-EEKNLELLYRMD-TAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l   85 (331)
                      ....+.+++|+|.+   ++|+++.           ++.|++||+.+ .+  ...+...+ ...+.+++|+|+    +++|
T Consensus        40 ~~~~v~~~~~spdg---~~l~~~~-----------~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~spd----g~~l   99 (297)
T 2ojh_A           40 TPELFEAPNWSPDG---KYLLLNS-----------EGLLYRLSLAGDPS--PEKVDTGFATICNNDHGISPD----GALY   99 (297)
T ss_dssp             ESSCCEEEEECTTS---SEEEEEE-----------TTEEEEEESSSCCS--CEECCCTTCCCBCSCCEECTT----SSEE
T ss_pred             CCcceEeeEECCCC---CEEEEEc-----------CCeEEEEeCCCCCC--ceEeccccccccccceEECCC----CCEE
Confidence            45678889998877   8999987           88999999988 64  33443444 467899999999    8899


Q ss_pred             EEEcC--CccE-EEec--CCCcc----cCccEEEEEEcCCCCeEE-EEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           86 AQADA--DGGL-LRDI--TGEKI----SSSMCLCLEWNPSATSIT-VGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        86 ~~~~~--dg~i-iw~~--~~~~~----~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      ++++.  ++.. +|.+  .+...    ....+..++|+|+++.|+ ++..++.+++|+++.... ....+..+...+.++
T Consensus       100 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~  178 (297)
T 2ojh_A          100 AISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGP  178 (297)
T ss_dssp             EEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEE
T ss_pred             EEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC-cceEcccCCCccccc
Confidence            99883  3444 5544  44332    234588899999999877 677899999999654221 234555677789999


Q ss_pred             eeCCCCCcEEEEE-cCCCeEEEEEcc-CCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----------CeEEE
Q 020107          156 SFDVHQPHMVYTG-SDDCKFSGWDIR-ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----------EYLRV  222 (331)
Q Consensus       156 ~~~~~~~~~l~~~-~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------~~i~i  222 (331)
                      +|+| ++..++.+ ..++.+++|+++ .+.....+..   |...+.++.|+| ++++|++++.+           +.|.+
T Consensus       179 ~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~  253 (297)
T 2ojh_A          179 DYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITD---SAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQL  253 (297)
T ss_dssp             EECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCC---CSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred             eECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEec---CCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEE
Confidence            9999 66666554 468999999987 3444444444   778899999999 99998888766           56999


Q ss_pred             EEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107          223 WDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN  263 (331)
Q Consensus       223 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  263 (331)
                      ||+.+.+.........|...+..++|+|++ ..+++++.++
T Consensus       254 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~  293 (297)
T 2ojh_A          254 MDMDGGNVETLFDLFGGQGTMNSPNWSPDG-DEFAYVRYFP  293 (297)
T ss_dssp             EETTSCSCEEEEEEEESTTTSCSCCBCTTS-SEEEEEEECC
T ss_pred             EecCCCCceeeeccCCCCcccccceECCCC-CEEEEEEecc
Confidence            999875332222234778899999999997 5555555544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=2.6e-21  Score=161.10  Aligned_cols=270  Identities=11%  Similarity=0.125  Sum_probs=175.1

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe-eecCcEeEEEEcCCCCCCCCeEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR-MDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      ....+.+++|+|.+   ++|++++.         .++.|++|+++.....+..+.. .....+..++|+|+    +++|+
T Consensus        36 ~~~~~~~~~~spdg---~~l~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----g~~l~   99 (343)
T 1ri6_A           36 VPGQVQPMVVSPDK---RYLYVGVR---------PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ----GQFVF   99 (343)
T ss_dssp             CSSCCCCEEECTTS---SEEEEEET---------TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTT----SSEEE
T ss_pred             cCCCCceEEECCCC---CEEEEeec---------CCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCC----CCEEE
Confidence            44567788888876   77777772         2499999999832112222211 12337899999999    88776


Q ss_pred             EEc-CCccE-EEecC---CCcc-----cCccEEEEEEcCCCCeEEEEe-cCCeEEEEEccc-cceeeee--eeec-ccce
Q 020107           87 QAD-ADGGL-LRDIT---GEKI-----SSSMCLCLEWNPSATSITVGL-SDGSVSIVSVVE-SQLEVLQ--QWKA-HEFE  151 (331)
Q Consensus        87 ~~~-~dg~i-iw~~~---~~~~-----~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~--~~~~-~~~~  151 (331)
                      +++ .++.+ +|++.   ....     ....+.+++|+|+++.+++++ .++.|.+||+.+ ++.....  .+.. ....
T Consensus       100 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  179 (343)
T 1ri6_A          100 VGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG  179 (343)
T ss_dssp             EEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCC
T ss_pred             EEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCC
Confidence            655 47778 99983   2111     234578899999999888887 799999999987 5543322  2332 2346


Q ss_pred             eEEEeeCCCCCcE-EEEEcCCCeEEEEEccC--CCc--eeeeecccC---CCcceEEEEEecCCCCEEE-EEecCCeEEE
Q 020107          152 LWATSFDVHQPHM-VYTGSDDCKFSGWDIRE--SPF--KLAFQNSKI---HKMGVCCIASIPSDSNTLL-TGSYDEYLRV  222 (331)
Q Consensus       152 v~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~~~~~~~~~~~l~-~~~~d~~i~i  222 (331)
                      +..++|+| ++++ ++++..++.|.+||+..  ++.  ...+...+.   ....+..++|+| ++++|+ ++..++.|.+
T Consensus       180 ~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v  257 (343)
T 1ri6_A          180 PRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITV  257 (343)
T ss_dssp             EEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred             cceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCEEEE
Confidence            88899999 5664 45566899999999964  332  112221111   134577899999 887776 4557999999


Q ss_pred             EEecCCCCCcee-eeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCccc--ceeEEeecCCcceeeeeecCCC
Q 020107          223 WDVRSISKPVNE-TSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKA--EVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       223 wd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                      ||+......... ........+..++|+|++ ..+++++ .++.+.+|++....+  +.+..+.. .....+++|.++.
T Consensus       258 ~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~  334 (343)
T 1ri6_A          258 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE  334 (343)
T ss_dssp             EEECTTSCCEEEEEEEECSSSCCCEEECTTS-SEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred             EEEcCCCCceEEeeeecCCCccceEEECCCC-CEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence            999842111111 112333448899999997 5555555 568888998875433  33444443 2345677777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=2.2e-20  Score=156.85  Aligned_cols=278  Identities=14%  Similarity=0.060  Sum_probs=183.7

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC----ccE-EEecC
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD----GGL-LRDIT   99 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d----g~i-iw~~~   99 (331)
                      .++.+|+|..      ..++.|++|.++.....+..+...+...+..++|+|+    +++|++++.+    +.+ +|++.
T Consensus        14 ~~~~vg~y~~------~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spd----g~~l~~~~~~~~~~~~v~~~~~~   83 (361)
T 3scy_A           14 LTMLVGTYTS------GNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSAD----GKFVYSVNEFSKDQAAVSAFAFD   83 (361)
T ss_dssp             EEEEEEECCS------SSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTT----SSEEEEEECCSSTTCEEEEEEEE
T ss_pred             eEEEEEeccC------CCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCC----CCEEEEEEccCCCCCcEEEEEEe
Confidence            5788888742      2477899999875433344443336777889999999    8889988886    677 88876


Q ss_pred             CC--cc--------cCccEEEEEEcCCCCeEEEEe-cCCeEEEEEccccc-eeeeeee---ec--------ccceeEEEe
Q 020107          100 GE--KI--------SSSMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQ-LEVLQQW---KA--------HEFELWATS  156 (331)
Q Consensus       100 ~~--~~--------~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~---~~--------~~~~v~~~~  156 (331)
                      ..  ..        +......+++  ++++|++++ .++.|.+|++.... ...+...   .+        +...+.+++
T Consensus        84 ~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  161 (361)
T 3scy_A           84 KEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR  161 (361)
T ss_dssp             TTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred             CCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence            52  21        2345667777  788777776 58899999997532 1111111   11        122357899


Q ss_pred             eCCCCCc-EEEEEcCCCeEEEEEccCCCc------e------eeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEE
Q 020107          157 FDVHQPH-MVYTGSDDCKFSGWDIRESPF------K------LAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRV  222 (331)
Q Consensus       157 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~------~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i  222 (331)
                      |+| +++ ++++...++.|++|++.....      .      .....  .+...+..++|+| +++++++++ .++.|.+
T Consensus       162 ~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v  237 (361)
T 3scy_A          162 ITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV--APGSGPRHLIFNS-DGKFAYLINEIGGTVIA  237 (361)
T ss_dssp             ECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC--CTTCCEEEEEECT-TSSEEEEEETTTCEEEE
T ss_pred             ECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec--CCCCCCeEEEEcC-CCCEEEEEcCCCCeEEE
Confidence            999 666 455555689999999886542      1      11121  2456688999999 998887777 6899999


Q ss_pred             EEecCCCCCceeee---eecCCceEEEEECCCCCCeEEEEEe--cCcEEEEEEcCcccc--eeEEeecCCcceeeeeecC
Q 020107          223 WDVRSISKPVNETS---VCLGGGVWRIKHHPFIPGLVLAACM--HNGFAVVKVGGEKAE--VLETYAKHGSLAYGADWQR  295 (331)
Q Consensus       223 wd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~  295 (331)
                      ||+.++........   ..+...+..++|+|++ ..++++..  ++.+.+|++....++  .+..+.. ...+.+++|+|
T Consensus       238 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp  315 (361)
T 3scy_A          238 FRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP  315 (361)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT
T ss_pred             EEecCCceEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC
Confidence            99986421111101   1223456899999997 45555554  477999999743233  4445544 55788999999


Q ss_pred             CCCcccccccCcEEEEeecCCCeEEEE--cCCCccc
Q 020107          296 GRSSLEGKRKNSLVATCSFYDRLLRIW--MPESDCL  329 (331)
Q Consensus       296 ~~~~~~~~~~~~~l~s~~~~d~~i~iW--~~~~~~~  329 (331)
                      ++         ++|++++..++.|.+|  |.+++.+
T Consensus       316 dg---------~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          316 NG---------KYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             TS---------CEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             CC---------CEEEEEECCCCCEEEEEEECCCCcE
Confidence            99         5666665367999996  4445543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=1.7e-22  Score=173.40  Aligned_cols=207  Identities=9%  Similarity=-0.039  Sum_probs=151.0

Q ss_pred             cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce--------eeee-----eeecccceeEEEeeCCCCCcEEE----
Q 020107          104 SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL--------EVLQ-----QWKAHEFELWATSFDVHQPHMVY----  166 (331)
Q Consensus       104 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~-----~~~~~~~~v~~~~~~~~~~~~l~----  166 (331)
                      +...+..+++++++.++++++.++ +++|+...-..        ..+.     ....+...|.+++|+| ++++|+    
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~  112 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMM  112 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEe
Confidence            344578899999999999999888 88887643100        0000     0112456799999999 778888    


Q ss_pred             EEcCCCeEEEEEccCC--------CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107          167 TGSDDCKFSGWDIRES--------PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC  238 (331)
Q Consensus       167 ~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  238 (331)
                      +++.|+.|++||+++.        +....+....+|...|.+++|+|..+.+|++++.||+|++||+++. ..... ...
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~-~~~  190 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCA-TLP  190 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEE-EEC
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceee-ccC
Confidence            7889999999999765        2222334345589999999999944899999999999999999985 22222 356


Q ss_pred             cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-------CCcceeeeeecCCCCcccccccCcEEEE
Q 020107          239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-------HGSLAYGADWQRGRSSLEGKRKNSLVAT  311 (331)
Q Consensus       239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~~~~~~~~l~s  311 (331)
                      |...|.+++|+|++ ..+++++.++.+++|++..   +....+..       |...|.++.|+++.         .++++
T Consensus       191 ~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~v~w~~~~---------~~l~~  257 (434)
T 2oit_A          191 STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPTL---QEKKVIPCPPFYESDHPVRVLDVLWIGTY---------VFAIV  257 (434)
T ss_dssp             GGGCEEEEEECTTS-SCEEEEETTSCEEEECTTC---CEEEEECCCTTCCTTSCEEEEEEEEEETT---------EEEEE
T ss_pred             CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccCC---cccccccCCcccCCCCceeEEEEEEecCc---------eEEEE
Confidence            88899999999997 7778888888888888762   33344433       33489999999987         46654


Q ss_pred             eecCCC------eEEEEcCCCc
Q 020107          312 CSFYDR------LLRIWMPESD  327 (331)
Q Consensus       312 ~~~~d~------~i~iW~~~~~  327 (331)
                      .+..||      .+++|++.+.
T Consensus       258 ~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          258 YAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEETTCCSSSCCEEEEEECCCT
T ss_pred             EccCCCccCCCCceEEEEeccC
Confidence            332443      3899998754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=1.6e-22  Score=185.06  Aligned_cols=279  Identities=9%  Similarity=-0.009  Sum_probs=188.0

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC---cEeEEEEcCCCCCCCCeEEEE
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA---GIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ...++|+|++   ++++.+           .++.|++||+.+++  ...+...|..   .+.+++|||+    +++|+.+
T Consensus        18 ~~~~~~s~dg---~~~~~~-----------~d~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~SpD----g~~la~~   77 (719)
T 1z68_A           18 TFFPNWISGQ---EYLHQS-----------ADNNIVLYNIETGQ--SYTILSNRTMKSVNASNYGLSPD----RQFVYLE   77 (719)
T ss_dssp             CCCCEESSSS---EEEEEC-----------TTSCEEEEESSSCC--EEEEECHHHHHTTTCSEEEECTT----SSEEEEE
T ss_pred             CCccEECCCC---eEEEEc-----------CCCCEEEEEcCCCc--EEEEEccccccccceeeEEECCC----CCeEEEE
Confidence            3478888877   666665           38999999999876  4444454443   4899999999    9999988


Q ss_pred             cC---------CccE-EEecCCCcc---c--CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccccee-
Q 020107           89 DA---------DGGL-LRDITGEKI---S--SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFEL-  152 (331)
Q Consensus        89 ~~---------dg~i-iw~~~~~~~---~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v-  152 (331)
                      +.         ++.+ +|++.+++.   .  ...+..++|+|||+.|+.+. ++.|++|++.+++...+. ..++...+ 
T Consensus        78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~-~~~~~~~v~  155 (719)
T 1z68_A           78 SDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT-FNGRENKIF  155 (719)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC-CCCBTTTEE
T ss_pred             ecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe-cCCCcCCeE
Confidence            76         6777 999988765   2  35678899999999999885 789999999887542221 12222212 


Q ss_pred             ----------------EEEeeCCCCCcEEEEEcCCC----------------------------------eEEEEEccCC
Q 020107          153 ----------------WATSFDVHQPHMVYTGSDDC----------------------------------KFSGWDIRES  182 (331)
Q Consensus       153 ----------------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~  182 (331)
                                      .+++|+| +++.|++++.|.                                  .|++||+.++
T Consensus       156 ~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~  234 (719)
T 1z68_A          156 NGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP  234 (719)
T ss_dssp             ESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH
T ss_pred             cccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC
Confidence                            4899999 888888877542                                  7889999877


Q ss_pred             Cce--eeee---cccCCCcceEEEEEecCCCCEEEEEecC----CeEEEEE----ecCCCCCceeee---eecCCceE--
Q 020107          183 PFK--LAFQ---NSKIHKMGVCCIASIPSDSNTLLTGSYD----EYLRVWD----VRSISKPVNETS---VCLGGGVW--  244 (331)
Q Consensus       183 ~~~--~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~iwd----~~~~~~~~~~~~---~~~~~~v~--  244 (331)
                      +..  ..+.   ....|...+.+++|+| ++.++++....    ..|.+||    ..++ +......   ..|.+.+.  
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~  312 (719)
T 1z68_A          235 AYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGF  312 (719)
T ss_dssp             HHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSS
T ss_pred             CccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccc
Confidence            542  1111   0123788899999999 78777774432    2488889    6553 2222211   35666676  


Q ss_pred             ---EEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC----C
Q 020107          245 ---RIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY----D  316 (331)
Q Consensus       245 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~----d  316 (331)
                         .++|+|++..+++.++ .++...+|.+....++ ...+..+...+..+.++ ++         +.|+..+..    +
T Consensus       313 ~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~---------~~i~~~~~~~~~~~  381 (719)
T 1z68_A          313 FVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQ---------DSLFYSSNEFEEYP  381 (719)
T ss_dssp             SCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CS---------SEEEEEESCGGGCT
T ss_pred             cCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eC---------CEEEEEEecCCCCC
Confidence               8899999855555444 3444445555433233 55666666667777777 66         355544413    4


Q ss_pred             CeEEEEcCCC
Q 020107          317 RLLRIWMPES  326 (331)
Q Consensus       317 ~~i~iW~~~~  326 (331)
                      +.+++|.++.
T Consensus       382 ~~~~l~~~~~  391 (719)
T 1z68_A          382 GRRNIYRISI  391 (719)
T ss_dssp             TCBEEEEEEC
T ss_pred             ceEEEEEEeC
Confidence            8899998753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=1.5e-21  Score=174.31  Aligned_cols=266  Identities=12%  Similarity=0.014  Sum_probs=188.3

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      ..++.+|+++|++   +.||+++.         .+|.++||++++++  ...+...+...+..++|+|+     ++++++
T Consensus        21 ~~~~~~~~~~~DG---~~la~~s~---------~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd-----~~l~~~   81 (582)
T 3o4h_A           21 AVEKYSLQGVVDG---DKLLVVGF---------SEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG-----RVILVR   81 (582)
T ss_dssp             HSCEEEEEEEETT---TEEEEEEE---------ETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS-----EEEEEE
T ss_pred             ccchheeecCCCC---CeEEEEEc---------cCCceeEEEEcCCC--cEeeecccccccccccCCCC-----eEEEEe
Confidence            4578899999887   88998872         39999999986654  44443333368999999987     266666


Q ss_pred             cC---CccE-EEecCC----Ccc---cCccEEEEEEcCCCCe-EEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107           89 DA---DGGL-LRDITG----EKI---SSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        89 ~~---dg~i-iw~~~~----~~~---~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  156 (331)
                      +.   +... +|.+..    ...   ........+|+|+++. +++...++.+.+||+.+++...+.  . +..  .+++
T Consensus        82 ~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~--~-~~~--~~~~  156 (582)
T 3o4h_A           82 DVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA--R-LPG--FGFV  156 (582)
T ss_dssp             ECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE--E-ESS--CEEE
T ss_pred             ccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee--c-CCC--ceEE
Confidence            54   2333 554432    211   1223446688888864 334444455569999987643322  2 222  7899


Q ss_pred             eCCCCCcEEEEEcCC----CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC--eEEEEEecCCCC
Q 020107          157 FDVHQPHMVYTGSDD----CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE--YLRVWDVRSISK  230 (331)
Q Consensus       157 ~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~  230 (331)
                      |+| +++.+++++.+    +.|++||+.+++.. .+..   |...+..++|+| +++.|+++..++  .|++||+.+++ 
T Consensus       157 ~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~---~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~-  229 (582)
T 3o4h_A          157 SDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS---GEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGS-  229 (582)
T ss_dssp             EEE-ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECC---SSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCC-
T ss_pred             ECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec---CCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCc-
Confidence            999 88899877766    78999999988744 4444   788899999999 999999888888  89999998753 


Q ss_pred             CceeeeeecCCceEEEE--------ECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccc
Q 020107          231 PVNETSVCLGGGVWRIK--------HHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEG  302 (331)
Q Consensus       231 ~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  302 (331)
                      ..  ....+...+..++        |+|++ .+++++..++.+++|.+    ++...   .+.+.+.+++|+ ++     
T Consensus       230 ~~--~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~----g~~~~---~~~~~v~~~~~s-dg-----  293 (582)
T 3o4h_A          230 VE--DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID----GERVE---APQGNHGRVVLW-RG-----  293 (582)
T ss_dssp             EE--ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET----TEEEC---CCSSEEEEEEEE-TT-----
T ss_pred             EE--EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE----CCeec---cCCCceEEEEec-CC-----
Confidence            33  3466777777777        99998 77777777888888887    23322   345678899999 77     


Q ss_pred             cccCcEEEEeecCC---CeEEEEcCCC
Q 020107          303 KRKNSLVATCSFYD---RLLRIWMPES  326 (331)
Q Consensus       303 ~~~~~~l~s~~~~d---~~i~iW~~~~  326 (331)
                          +++++++ .+   ..|.+|+..+
T Consensus       294 ----~~l~~~s-~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          294 ----KLVTSHT-SLSTPPRIVSLPSGE  315 (582)
T ss_dssp             ----EEEEEEE-ETTEEEEEEEETTCC
T ss_pred             ----EEEEEEc-CCCCCCeEEEEcCCC
Confidence                6888887 56   3477887764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=3.8e-21  Score=182.59  Aligned_cols=272  Identities=11%  Similarity=-0.011  Sum_probs=198.7

Q ss_pred             cceeEeee-cCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC-cEeEEEEcCCCCCCCCeEEEE
Q 020107           11 NADAVEFC-PQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA-GIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus        11 ~~~~v~~~-~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+..++|+ |++   ++||+++           ++.|++|++....  ...+ ..|.. .+..++|+ +    ++.|+.+
T Consensus       297 ~v~~~~~S~pdG---~~la~~~-----------~~~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~s-d----g~~l~~~  354 (1045)
T 1k32_A          297 SKFAEDFSPLDG---DLIAFVS-----------RGQAFIQDVSGTY--VLKV-PEPLRIRYVRRGGD-T----KVAFIHG  354 (1045)
T ss_dssp             GGGEEEEEECGG---GCEEEEE-----------TTEEEEECTTSSB--EEEC-SCCSCEEEEEECSS-S----EEEEEEE
T ss_pred             ccceeeecCCCC---CEEEEEE-----------cCEEEEEcCCCCc--eEEc-cCCCcceEEeeeEc-C----CCeEEEE
Confidence            57889998 776   8899987           8899999998764  3333 45666 89999999 8    8888888


Q ss_pred             cCCccE--EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107           89 DADGGL--LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        89 ~~dg~i--iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (331)
                      +.++.+  +|++.+...     +...+..++|+|+++.|++++.++.|++||+.+++.  ......|...+.+++|+| +
T Consensus       355 s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~--~~~~~~~~~~v~~~~~Sp-D  431 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--TVIERSREAMITDFTISD-N  431 (1045)
T ss_dssp             ETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSSSCCCCEEECT-T
T ss_pred             ECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce--EEeccCCCCCccceEECC-C
Confidence            876655  567765432     456789999999999999999999999999998765  444557888899999999 7


Q ss_pred             CcEEEEEcCCC----------eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC-
Q 020107          162 PHMVYTGSDDC----------KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK-  230 (331)
Q Consensus       162 ~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-  230 (331)
                      +++|++++.++          .|++||+.+++ ...+..   |...+..+.|+| +++.|++++.++...+|+...... 
T Consensus       432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~---~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~~~  506 (1045)
T 1k32_A          432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATT---ENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFS  506 (1045)
T ss_dssp             SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSC---SSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEE
T ss_pred             CCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeC---CCcccCCceEcC-CCCEEEEEecccCCcCcchhccccc
Confidence            78887776544          89999999876 444444   788899999999 999999999877777776432110 


Q ss_pred             ------------------C----------------------ceeeeeecCCceEEEEECCCCCCeEEE-----------E
Q 020107          231 ------------------P----------------------VNETSVCLGGGVWRIKHHPFIPGLVLA-----------A  259 (331)
Q Consensus       231 ------------------~----------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~  259 (331)
                                        +                      ....+..+.+.+..++++|++ ..+++           +
T Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg-~~~~~~~~~g~~~~~~~  585 (1045)
T 1k32_A          507 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-ILIYSVPVHGEFAAYYQ  585 (1045)
T ss_dssp             CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-EEEEECCCCCSHHHHHH
T ss_pred             cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC-eEEEEecccCccccccc
Confidence                              0                      001112355778999999985 33443           1


Q ss_pred             EecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +.++...+|.+....++ ...+.   ..+..++|+|++         +.|++++ .+ .|++||++++.
T Consensus       586 ~~~~~~~l~~~d~~~~~-~~~l~---~~v~~~~~S~DG---------~~l~~~~-~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          586 GAPEKGVLLKYDVKTRK-VTEVK---NNLTDLRLSADR---------KTVMVRK-DD-GKIYTFPLEKP  639 (1045)
T ss_dssp             CCCCCEEEEEEETTTCC-EEEEE---EEEEEEEECTTS---------CEEEEEE-TT-SCEEEEESSCT
T ss_pred             ccCCCceEEEEECCCCc-EEEee---cCcceEEECCCC---------CEEEEEc-CC-cEEEEeCccCc
Confidence            22233344444333233 23333   568899999999         6888887 45 89999998765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=3.3e-21  Score=182.98  Aligned_cols=269  Identities=12%  Similarity=0.065  Sum_probs=200.9

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+.+.++.|++.    .+++++.          .++.+.||.++........+ ..|. .+..++|+|+    ++.|+.+
T Consensus       203 ~~~v~~~~~s~d----~l~~~~~----------~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpD----G~~la~~  262 (1045)
T 1k32_A          203 STHVSSPVIVGH----RIYFITD----------IDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTD----GRRILFS  262 (1045)
T ss_dssp             SSCCEEEEEETT----EEEEEEC----------TTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEES----SSCEEEE
T ss_pred             CCcccceEEeCC----EEEEEEe----------ccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCC----CCEEEEE
Confidence            456667777654    4555655          68899999876533234433 3343 4677899999    8888887


Q ss_pred             cCCccE-EEecCCCcc----------------cCccEEEEEEc-CCCCeEEEEecCCeEEEEEccccceeeeeeeecccc
Q 020107           89 DADGGL-LRDITGEKI----------------SSSMCLCLEWN-PSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF  150 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~----------------~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  150 (331)
                      . ++.+ +|++.....                +...+.+++|+ |+|+.|++++ ++.|.+|++..++.   ..+..|..
T Consensus       263 ~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~---~~~~~~~~  337 (1045)
T 1k32_A          263 K-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV---LKVPEPLR  337 (1045)
T ss_dssp             E-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE---EECSCCSC
T ss_pred             e-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce---EEccCCCc
Confidence            4 7777 888743322                12257899999 9999999887 78999999987653   33455666


Q ss_pred             -eeEEEeeCCCCCcEEEEEcCCCeEE-EEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107          151 -ELWATSFDVHQPHMVYTGSDDCKFS-GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       151 -~v~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                       .+..++|+  ++..++.++.+..+. +||+.+++... +..   |...+..++|+| ++++|++++.++.|++||+.++
T Consensus       338 ~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~---~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg  410 (1045)
T 1k32_A          338 IRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEK-FEE---NLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETG  410 (1045)
T ss_dssp             EEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEE-CCC---CCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTC
T ss_pred             ceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceE-ecC---CccceeeeEECC-CCCEEEEECCCCeEEEEECCCC
Confidence             89999999  667788888788888 99998765332 323   788899999999 9999999999999999999875


Q ss_pred             CCCceeeeeecCCceEEEEECCCCCCeEEEEEecC----------cEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107          229 SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN----------GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  298 (331)
                       +. ......|.+.+..++|+|++ ..+++++.++          .+.+|++..  ++ ...+..|...+..++|+|++ 
T Consensus       411 -~~-~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~--g~-~~~l~~~~~~~~~~~~spdG-  483 (1045)
T 1k32_A          411 -KP-TVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEG--RK-IFAATTENSHDYAPAFDADS-  483 (1045)
T ss_dssp             -CE-EEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTT--TE-EEECSCSSSBEEEEEECTTS-
T ss_pred             -ce-EEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCC--Cc-EEEeeCCCcccCCceEcCCC-
Confidence             32 33235788899999999997 5555555543          667777654  33 66777888889999999999 


Q ss_pred             cccccccCcEEEEeecCCCeEEEEcCC
Q 020107          299 SLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       299 ~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                              ++|++++ .++...+|+..
T Consensus       484 --------~~l~~~s-~~~~~~~~~~~  501 (1045)
T 1k32_A          484 --------KNLYYLS-YRSLDPSPDRV  501 (1045)
T ss_dssp             --------CEEEEEE-SCCCCCEECSS
T ss_pred             --------CEEEEEe-cccCCcCcchh
Confidence                    6888888 88888888754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=8.3e-20  Score=152.52  Aligned_cols=251  Identities=11%  Similarity=0.104  Sum_probs=164.1

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+..++|+|.+   ++++++..        ..++.|++|++..+..........+...+..++|+|+    +++|++++
T Consensus        40 ~~p~~~a~spdg---~l~~~~~~--------~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd----g~~l~~~~  104 (347)
T 3hfq_A           40 QNPTYLALSAKD---CLYSVDKE--------DDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA----RQLVYSAN  104 (347)
T ss_dssp             SCCCCEEECTTC---EEEEEEEE--------TTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT----TTEEEEEE
T ss_pred             CCcceEEEccCC---eEEEEEec--------CCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC----CCEEEEEe
Confidence            456667777765   64444430        0268999999976542222222446677899999999    88888777


Q ss_pred             -CCccE-EEecCC-Ccc-------c----------CccEEEEEEcCCCCeEEEEecCCeEEEEEcc-ccceeeeeeeecc
Q 020107           90 -ADGGL-LRDITG-EKI-------S----------SSMCLCLEWNPSATSITVGLSDGSVSIVSVV-ESQLEVLQQWKAH  148 (331)
Q Consensus        90 -~dg~i-iw~~~~-~~~-------~----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~  148 (331)
                       .++.+ +|++.. +..       .          ...+.+++|+|+++.+++...++.|.+|++. +++......+..+
T Consensus       105 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~  184 (347)
T 3hfq_A          105 YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME  184 (347)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC
T ss_pred             CCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC
Confidence             67778 999852 111       0          1237789999999966666668999999998 4544333333322


Q ss_pred             -cceeEEEeeCCCCCc-EEEEEcCCCeEEEEEccC--CCce--eeeecccC---CCcceEEEEEecCCCCEE-EEEecCC
Q 020107          149 -EFELWATSFDVHQPH-MVYTGSDDCKFSGWDIRE--SPFK--LAFQNSKI---HKMGVCCIASIPSDSNTL-LTGSYDE  218 (331)
Q Consensus       149 -~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~--~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~~l-~~~~~d~  218 (331)
                       ...+..++|+| +++ ++++...++.|.+|++..  ++..  ..+...+.   ....+..++|+| ++++| ++...++
T Consensus       185 ~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~  262 (347)
T 3hfq_A          185 AGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYN  262 (347)
T ss_dssp             TTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTT
T ss_pred             CCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCC
Confidence             23577899999 666 555567889999999985  3321  11221110   114588999999 88877 5555689


Q ss_pred             eEEEEEecCCCC-CceeeeeecCCceEEEEECCCCCCeEEEEEe-cCcEEEEEEcCccccee
Q 020107          219 YLRVWDVRSISK-PVNETSVCLGGGVWRIKHHPFIPGLVLAACM-HNGFAVVKVGGEKAEVL  278 (331)
Q Consensus       219 ~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  278 (331)
                      .|.+||+..... ........+...+..++|+|++ ..+++++. ++.+.+|++...++++.
T Consensus       263 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          263 TLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            999999974211 1111123445678999999997 45555554 47788998866544443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=8.5e-20  Score=153.54  Aligned_cols=277  Identities=13%  Similarity=0.057  Sum_probs=180.1

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee---ecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecC-
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM---DTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDIT-   99 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~-   99 (331)
                      ..|.+|+|.        .++.|.+|+++.....+..+...   ....+..++|+|+    +++|++++.+ .+ +|++. 
T Consensus         3 ~~~~vg~~~--------~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd----g~~l~~~~~~-~v~~~~~~~   69 (365)
T 1jof_A            3 HHLMIGTWT--------PPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE----RKNIYGAAMK-KWSSFAVKS   69 (365)
T ss_dssp             EEEEEEESS--------SSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT----SSEEEEEEBT-EEEEEEEEE
T ss_pred             EEEEEEEcc--------CCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC----CCEEEEEccc-eEEEEEECC
Confidence            357778752        23579998876433234433221   2346889999999    8899988888 66 99986 


Q ss_pred             CCccc-------CccEEEEEEcCCCCe--EEEEe-------------cCCeEEEEEccc-cceee-eeeee-cccceeEE
Q 020107          100 GEKIS-------SSMCLCLEWNPSATS--ITVGL-------------SDGSVSIVSVVE-SQLEV-LQQWK-AHEFELWA  154 (331)
Q Consensus       100 ~~~~~-------~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~i~d~~~-~~~~~-~~~~~-~~~~~v~~  154 (331)
                      +++..       ......++|+|+++.  ++++.             .+|.+.+|++.. ++... +..+. .+...+.+
T Consensus        70 ~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~  149 (365)
T 1jof_A           70 PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG  149 (365)
T ss_dssp             TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE
T ss_pred             CCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceE
Confidence            44321       122445789999994  45553             689999999974 44321 11111 24567899


Q ss_pred             EeeCCCCCcEEEEEc-CCCeEEEEEcc-CCCceeeeecc-cCCCcceEEEEEecCCCCEEEEEec-CCeEEEEEecCC-C
Q 020107          155 TSFDVHQPHMVYTGS-DDCKFSGWDIR-ESPFKLAFQNS-KIHKMGVCCIASIPSDSNTLLTGSY-DEYLRVWDVRSI-S  229 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~-~  229 (331)
                      ++|+| ++++++++. .++.|++||+. +++........ +.|...+..++|+| +++++++++. ++.|.+|++... .
T Consensus       150 ~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g  227 (365)
T 1jof_A          150 MVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCC
Confidence            99999 777666654 46899999998 66543221110 12456799999999 9988887775 789999988632 1


Q ss_pred             CCc---eeee-e-----ecCC------ceEEEE-ECCCCCCeEEEEE-ecC-----cEEEEEEcCcccceeE---EeecC
Q 020107          230 KPV---NETS-V-----CLGG------GVWRIK-HHPFIPGLVLAAC-MHN-----GFAVVKVGGEKAEVLE---TYAKH  284 (331)
Q Consensus       230 ~~~---~~~~-~-----~~~~------~v~~~~-~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~---~~~~h  284 (331)
                      +..   .... .     .+..      .+..++ |+|++ ..++++. ..+     .+.+|++... ++...   ....+
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~-g~~~~~~~~~~~~  305 (365)
T 1jof_A          228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDC-GSIEKQLFLSPTP  305 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTT-SCEEEEEEEEECS
T ss_pred             cEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCC-CCEEEeeeeeecC
Confidence            211   1100 1     1121      588999 99997 4444444 334     7899999742 44332   23345


Q ss_pred             CcceeeeeecC---CCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          285 GSLAYGADWQR---GRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       285 ~~~v~~~~~~~---~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ...+..++|+|   ++         ++|++++..++.|++|+++..
T Consensus       306 ~~~~~~~a~sp~~~dg---------~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          306 TSGGHSNAVSPCPWSD---------EWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCTTCCCEEECTTCT---------TEEEEECSSSCEEEEEEEETT
T ss_pred             CCCcccceecCCCcCC---------CEEEEEEcCCCeEEEEEEchh
Confidence            55677899999   67         678877623599999998765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=2.7e-20  Score=155.62  Aligned_cols=239  Identities=13%  Similarity=0.056  Sum_probs=173.1

Q ss_pred             ecCcEeEEEEcCCCCCCCCeEEEEcCC-------ccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEE-ecCCeEE
Q 020107           65 DTAGIFDIKWSPVGGNAGPFLAQADAD-------GGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVG-LSDGSVS  130 (331)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~l~~~~~d-------g~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~~dg~i~  130 (331)
                      ....+..++|+|+    ++.+++++.+       +.+ +|+..+.+..     ...+..++|+|+++.++++ ..++.|.
T Consensus        39 ~~~~~~~~~~s~d----g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           39 VGKGAYEMAYSQQ----ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVT  114 (353)
T ss_dssp             EESSEEEEEEETT----TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred             hccCccceEECCC----CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEE
Confidence            4467889999999    8888877744       456 9998876542     3456789999999976555 4489999


Q ss_pred             EEEccccceeeeeeeecccc---------eeEEEeeCCCCCcEEEEEc--CCCeEEEEEccCCCceeeeecccCCCcceE
Q 020107          131 IVSVVESQLEVLQQWKAHEF---------ELWATSFDVHQPHMVYTGS--DDCKFSGWDIRESPFKLAFQNSKIHKMGVC  199 (331)
Q Consensus       131 i~d~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  199 (331)
                      +||+.+++.  +..+..+..         .+.+++|+| +++.+++++  .++.|.+||+.+++....+..   +...+.
T Consensus       115 ~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~  188 (353)
T 3vgz_A          115 AIDAKTGEV--KGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQN---TGKMST  188 (353)
T ss_dssp             EEETTTCCE--EEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECC---CCTTCC
T ss_pred             EEeCCCCee--EEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecC---CCCccc
Confidence            999998765  444443321         268899999 656555554  588999999998876666653   455688


Q ss_pred             EEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee---ecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCccc
Q 020107          200 CIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV---CLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKA  275 (331)
Q Consensus       200 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  275 (331)
                      +++|+| +++++++++.++.|.+||+.+. +.......   .+...+..++|+|++ ..+++++ .++.+.+|++..  +
T Consensus       189 ~~~~s~-dg~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~--~  263 (353)
T 3vgz_A          189 GLALDS-EGKRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRN--G  263 (353)
T ss_dssp             CCEEET-TTTEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTT--C
T ss_pred             eEEECC-CCCEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCC-CEEEEEeCCCCEEEEEECCC--C
Confidence            899999 9999999999999999999875 33333112   245568889999998 4444444 447777787755  4


Q ss_pred             ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          276 EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       276 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +.+..+....  ...++|+|++.        .++++.. .++.|.+||+.++..
T Consensus       264 ~~~~~~~~~~--~~~~~~s~dg~--------~l~v~~~-~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          264 NILAKVAAPE--SLAVLFNPARN--------EAYVTHR-QAGKVSVIDAKSYKV  306 (353)
T ss_dssp             CEEEEEECSS--CCCEEEETTTT--------EEEEEET-TTTEEEEEETTTTEE
T ss_pred             cEEEEEEcCC--CceEEECCCCC--------EEEEEEC-CCCeEEEEECCCCeE
Confidence            6666665433  26799999984        3566665 799999999987643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=2.8e-20  Score=155.25  Aligned_cols=273  Identities=9%  Similarity=0.051  Sum_probs=172.1

Q ss_pred             EeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE-EEEcCCcc
Q 020107           15 VEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL-AQADADGG   93 (331)
Q Consensus        15 v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~   93 (331)
                      +++.+.+   .++++++          .++.|++||+.+.+ ....+.......+..++|+|+    ++.+ ++...++.
T Consensus         5 ~~~~~~~---~~~v~~~----------~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~s~d----g~~~~v~~~~~~~   66 (349)
T 1jmx_B            5 PALKAGH---EYMIVTN----------YPNNLHVVDVASDT-VYKSCVMPDKFGPGTAMMAPD----NRTAYVLNNHYGD   66 (349)
T ss_dssp             CCCCTTC---EEEEEEE----------TTTEEEEEETTTTE-EEEEEECSSCCSSCEEEECTT----SSEEEEEETTTTE
T ss_pred             ccccCCC---EEEEEeC----------CCCeEEEEECCCCc-EEEEEecCCCCCCceeEECCC----CCEEEEEeCCCCc
Confidence            3444443   7888887          69999999998875 333332222225789999999    7755 55667888


Q ss_pred             E-EEecCCCccc------------CccEEEEEEcCCCCeEEEEecC------------CeEEEEEcccccee-eeeeeec
Q 020107           94 L-LRDITGEKIS------------SSMCLCLEWNPSATSITVGLSD------------GSVSIVSVVESQLE-VLQQWKA  147 (331)
Q Consensus        94 i-iw~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~-~~~~~~~  147 (331)
                      + +|++.+.+..            ...+..++|+|+++++++++.+            +.|.+||+.+++.. .+..+. 
T Consensus        67 i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-  145 (349)
T 1jmx_B           67 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-  145 (349)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-
T ss_pred             EEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-
Confidence            8 9998876531            1126789999999999998865            89999999885432 223333 


Q ss_pred             ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc-C-C---------------C----cceEEEEEecC
Q 020107          148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK-I-H---------------K----MGVCCIASIPS  206 (331)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~-~---------------~----~~v~~~~~~~~  206 (331)
                      +...+.+++|+| +++ +++++  +.|.+||+.+++....+.... . +               .    .....+++++ 
T Consensus       146 ~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  220 (349)
T 1jmx_B          146 MPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK-  220 (349)
T ss_dssp             CCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred             CCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC-
Confidence            344688999999 666 55554  349999999887655554310 0 0               0    0234566654 


Q ss_pred             CCCEEEE-EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECC-CCCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107          207 DSNTLLT-GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP-FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH  284 (331)
Q Consensus       207 ~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  284 (331)
                      ++..... ......+..+|..+.+..... ...+...+..++|+| ++ ..++++  ++.+.+|++..  ++.+..+.. 
T Consensus       221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~--~~~~~~~~~-  293 (349)
T 1jmx_B          221 DDKQDPATADLLYGYLSVDLKTGKTHTQE-FADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQ--RKLIKAANL-  293 (349)
T ss_dssp             ------CCCEEEEEEEEEETTTCCEEEEE-EEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTT--TEEEEEEEC-
T ss_pred             CCcCCccccccceeEEEEeccCCcEEecc-cccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECcc--CeEEEEEcC-
Confidence            3211100 000111222444432211111 223556788999999 86 455554  77888888765  455555553 


Q ss_pred             CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ...+.+++|+|++         ++|++++ .++.|++||++++.
T Consensus       294 ~~~~~~~~~s~dg---------~~l~~~~-~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          294 DHTYYCVAFDKKG---------DKLYLGG-TFNDLAVFNPDTLE  327 (349)
T ss_dssp             SSCCCEEEECSSS---------SCEEEES-BSSEEEEEETTTTE
T ss_pred             CCCccceEECCCC---------CEEEEec-CCCeEEEEeccccc
Confidence            3457899999998         5666677 79999999998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=1.3e-20  Score=172.63  Aligned_cols=268  Identities=10%  Similarity=0.031  Sum_probs=176.2

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE--eeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY--RMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      +.+++|+|++   ++||+++..... ...+.++.+++||+.+++  ...+.  ..|...+..++|||+    ++.|+.++
T Consensus        63 v~~~~~SpDg---~~l~~~~~~~~~-~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~~~~SPd----G~~la~~~  132 (723)
T 1xfd_A           63 AIRYEISPDR---EYALFSYNVEPI-YQHSYTGYYVLSKIPHGD--PQSLDPPEVSNAKLQYAGWGPK----GQQLIFIF  132 (723)
T ss_dssp             CSEEEECTTS---SEEEEEESCCCC-SSSCCCSEEEEEESSSCC--CEECCCTTCCSCCCSBCCBCSS----TTCEEEEE
T ss_pred             cceEEECCCC---CEEEEEecCccc-eeecceeeEEEEECCCCc--eEeccCCccccccccccEECCC----CCEEEEEE
Confidence            6788888877   889988721000 000124889999998875  22221  234445899999999    88999888


Q ss_pred             CCccE-EEecCCCccc------Cc------------------cEEEEEEcCCCCeEEEEecCC-----------------
Q 020107           90 ADGGL-LRDITGEKIS------SS------------------MCLCLEWNPSATSITVGLSDG-----------------  127 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~~------~~------------------~v~~~~~~~~~~~l~~~~~dg-----------------  127 (331)
                      . +.+ +|++.+++..      ..                  .+.+++|+|||+.|++++.++                 
T Consensus       133 ~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~  211 (723)
T 1xfd_A          133 E-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYP  211 (723)
T ss_dssp             T-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred             C-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCC
Confidence            6 566 9998775431      12                  226899999999999887543                 


Q ss_pred             -----------------eEEEEEccccceeeeeeeec------ccceeEEEeeCCCCCcEEEEEcC----CCeEEEEEcc
Q 020107          128 -----------------SVSIVSVVESQLEVLQQWKA------HEFELWATSFDVHQPHMVYTGSD----DCKFSGWDIR  180 (331)
Q Consensus       128 -----------------~i~i~d~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~  180 (331)
                                       .|++||+.+++.  ...+..      +...+..++|+| +++++++...    +..|++||+.
T Consensus       212 ~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~  288 (723)
T 1xfd_A          212 TVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDAT  288 (723)
T ss_dssp             CCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETT
T ss_pred             cceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCC
Confidence                             799999987753  233333      366789999999 7777766543    3579999999


Q ss_pred             CCCceeeeecccCCCcce----EEEEEecCCCCEEEE--EecCC------eEEEEEecCCCCC--ceeeeeecCCceEE-
Q 020107          181 ESPFKLAFQNSKIHKMGV----CCIASIPSDSNTLLT--GSYDE------YLRVWDVRSISKP--VNETSVCLGGGVWR-  245 (331)
Q Consensus       181 ~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~l~~--~~~d~------~i~iwd~~~~~~~--~~~~~~~~~~~v~~-  245 (331)
                      +++....+..  .+...+    ..+.|+| +++.|+.  +..++      .|.+||.......  ... +......+.. 
T Consensus       289 ~g~~~~~~~~--~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-l~~~~~~~~~~  364 (723)
T 1xfd_A          289 TGVCTKKHED--ESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS-ITSGDWDVTKI  364 (723)
T ss_dssp             TCCEEEEEEE--ECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB-SCCSSSCEEEE
T ss_pred             CCcceEEEEe--ccCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE-eecCCeEEEee
Confidence            8876555433  133333    3789999 8886664  44666      4666663232221  222 1233344554 


Q ss_pred             EEECCCCCCeEEEEEec---CcEEEEEEcCcccceeEEeec---CCcceeeeeecCCCC
Q 020107          246 IKHHPFIPGLVLAACMH---NGFAVVKVGGEKAEVLETYAK---HGSLAYGADWQRGRS  298 (331)
Q Consensus       246 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~  298 (331)
                      ++|+|++ ..++.++.+   +.+++|.+..........+..   |...+..++|+|++.
T Consensus       365 ~~~spdg-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~  422 (723)
T 1xfd_A          365 LAYDEKG-NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMD  422 (723)
T ss_dssp             EEEETTT-TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred             eEEcCCC-CEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCC
Confidence            6999998 555555444   567899987543223333443   667789999999984

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=8e-19  Score=147.39  Aligned_cols=267  Identities=11%  Similarity=0.074  Sum_probs=170.6

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee--ecCcEeEEEEcCCCCCCCCeEEE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM--DTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      ..+..++|+|.+   ++|++++..      ...++.|.+|+++.....+..+...  +......+++  +    +++|++
T Consensus        50 ~~p~~l~~spdg---~~l~~~~~~------~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--d----g~~l~~  114 (361)
T 3scy_A           50 ANPSYLIPSADG---KFVYSVNEF------SKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--N----GKNIVT  114 (361)
T ss_dssp             SCCCSEEECTTS---SEEEEEECC------SSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--C----SSEEEE
T ss_pred             CCCceEEECCCC---CEEEEEEcc------CCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--C----CCEEEE
Confidence            345567777766   788888721      0024899999998742234433332  3445777777  5    666666


Q ss_pred             Ec-CCccE-EEecCCCccc--------------------CccEEEEEEcCCCCeEEEEec-CCeEEEEEccccc------
Q 020107           88 AD-ADGGL-LRDITGEKIS--------------------SSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQ------  138 (331)
Q Consensus        88 ~~-~dg~i-iw~~~~~~~~--------------------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~------  138 (331)
                      ++ .++.+ +|++......                    ...+.+++|+|+++++++++. ++.|.+|++....      
T Consensus       115 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~  194 (361)
T 3scy_A          115 ANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKE  194 (361)
T ss_dssp             EETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCC
T ss_pred             EECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccc
Confidence            65 57777 9998643211                    123477999999997766554 8999999987543      


Q ss_pred             -eeee----eeeecccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEccCCCce--eeeecccCCCcceEEEEEecCCCCE
Q 020107          139 -LEVL----QQWKAHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIRESPFK--LAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       139 -~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                       +...    ............++|+| +++++++++ .++.|.+||+.+++..  ..+.....+...+..++|+| ++++
T Consensus       195 ~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~  272 (361)
T 3scy_A          195 KFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKY  272 (361)
T ss_dssp             CCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSE
T ss_pred             ceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCE
Confidence             2111    11122345678999999 667665555 7899999999876532  22222233445678999999 9998


Q ss_pred             EEEEecC--CeEEEEEecCCCCCcee-eeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEee-cCC
Q 020107          211 LLTGSYD--EYLRVWDVRSISKPVNE-TSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYA-KHG  285 (331)
Q Consensus       211 l~~~~~d--~~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~h~  285 (331)
                      |+++..+  +.|.+|++......+.. ........+..++|+|++ ..+++++ .++.+.+|.+...++++..... .+.
T Consensus       273 l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~  351 (361)
T 3scy_A          273 LYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNG-KYLLVACRDTNVIQIFERDQATGLLTDIKKDIKV  351 (361)
T ss_dssp             EEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTS-CEEEEEETTTTEEEEEEECTTTCCEEECSCCEEC
T ss_pred             EEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCC-CEEEEEECCCCCEEEEEEECCCCcEeecceeeeC
Confidence            8776654  89999999732122111 112225578899999997 4555555 5677888888765455443321 244


Q ss_pred             cceeeeeec
Q 020107          286 SLAYGADWQ  294 (331)
Q Consensus       286 ~~v~~~~~~  294 (331)
                      ..+.++.|.
T Consensus       352 ~~p~~v~~~  360 (361)
T 3scy_A          352 DKPVCLKFV  360 (361)
T ss_dssp             SSEEEEEEE
T ss_pred             CCCeEEEEc
Confidence            567788775

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=5.4e-20  Score=152.56  Aligned_cols=228  Identities=10%  Similarity=0.033  Sum_probs=162.7

Q ss_pred             CCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeE
Q 020107           82 GPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELW  153 (331)
Q Consensus        82 ~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~  153 (331)
                      ...+++.+.++.+ +|++.+++.      +...+ .++|+|+++.+++++. ++.|.+||+.+++. ....+..+..+..
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~   87 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-KVVAIQEGQSSMA   87 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-EEEEEEECSSCCC
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-eEEecccCCCCcc
Confidence            4567888888888 999887654      23445 9999999997776666 89999999988764 1444555555555


Q ss_pred             EEeeCCCCCcEEEEEcCCC---eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE-EecCCe-EEEEEecCC
Q 020107          154 ATSFDVHQPHMVYTGSDDC---KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT-GSYDEY-LRVWDVRSI  228 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~-i~iwd~~~~  228 (331)
                      +++|+| ++++++++..++   .|.+||+.+++....+..    ...+.+++|+| +++++++ ...++. |.+|++...
T Consensus        88 ~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           88 DVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI----PYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             CEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC----CTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTT
T ss_pred             ceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC----CCCccceEECC-CCCEEEEEecCCCceEEEEEECCC
Confidence            599999 778777655553   899999998876665553    45579999999 8775544 455588 999999864


Q ss_pred             CCCcee--eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccce---eEEeecCCcceeeeeecCCCCccccc
Q 020107          229 SKPVNE--TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEV---LETYAKHGSLAYGADWQRGRSSLEGK  303 (331)
Q Consensus       229 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~  303 (331)
                      ......  ........+..++|+|+++.++++...++.+.+|++..  ++.   +..+.. ...+..++|+|++.     
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~--~~~~~~~~~~~~-~~~~~~~~~spdg~-----  233 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN--PENITLLNAVGT-NNLPGTIVVSRDGS-----  233 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS--TTSCEEEEEEEC-SSCCCCEEECTTSS-----
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC--CcccceeeeccC-CCCCceEEECCCCC-----
Confidence            322111  11244566899999999733444444567788898875  344   666654 46678999999993     


Q ss_pred             ccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          304 RKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       304 ~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                         .++++.. .++.|.+||++++.+
T Consensus       234 ---~l~v~~~-~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          234 ---TVYVLTE-STVDVFNFNQLSGTL  255 (331)
T ss_dssp             ---EEEEECS-SEEEEEEEETTTTEE
T ss_pred             ---EEEEEEc-CCCEEEEEECCCCce
Confidence               2445555 688999999988754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=2.3e-19  Score=148.90  Aligned_cols=241  Identities=12%  Similarity=0.070  Sum_probs=168.2

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee----cCcEeEEEEcCCCCCCCCeEE
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD----TAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      .+..++|+|.+   ++++++..         .++.|.+||+.+.+ .+..+...+    ...+..++|+|+    ++.|+
T Consensus        35 ~~~~~~~s~dg---~~l~v~~~---------~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d----g~~l~   97 (337)
T 1pby_B           35 TPMVPMVAPGG---RIAYATVN---------KSESLVKIDLVTGE-TLGRIDLSTPEERVKSLFGAALSPD----GKTLA   97 (337)
T ss_dssp             CCCCEEECTTS---SEEEEEET---------TTTEEEEEETTTCC-EEEEEECCBTTEEEECTTCEEECTT----SSEEE
T ss_pred             CccceEEcCCC---CEEEEEeC---------CCCeEEEEECCCCC-eEeeEEcCCcccccccccceEECCC----CCEEE
Confidence            57889998877   55544431         58899999998765 333332222    226788999999    88888


Q ss_pred             EEc------------CCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc
Q 020107           87 QAD------------ADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH  148 (331)
Q Consensus        87 ~~~------------~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  148 (331)
                      +++            .++.+ +|++.+.+.     ....+.+++|+|++++|+++  ++.|.+||+.+++.  ...+..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~--~~~~~~~  173 (337)
T 1pby_B           98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL--VEDKPIQ  173 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE--EEEECST
T ss_pred             EEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE--eeeeecc
Confidence            885            46778 999987653     23456788999999998888  68999999988754  4444433


Q ss_pred             cceeEEEeeCCCCCcEEEEEcCCC-----------------------eEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107          149 EFELWATSFDVHQPHMVYTGSDDC-----------------------KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP  205 (331)
Q Consensus       149 ~~~v~~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  205 (331)
                      .. ...+.|+|+...+++++..++                       .|.+||+.+++.. .+.. ..+...+.+++|+|
T Consensus       174 ~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~-~~~~~~~~~~~~s~  250 (337)
T 1pby_B          174 SW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV-RIMDVFYFSTAVNP  250 (337)
T ss_dssp             TT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE-EECSSCEEEEEECT
T ss_pred             cc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec-CCCCCceeeEEECC
Confidence            20 113378884333333333333                       4689999988754 3333 33667889999999


Q ss_pred             CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107          206 SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH  284 (331)
Q Consensus       206 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  284 (331)
                       ++++++++  ++.|.+||+.+. +.+..  ......+.+++|+|++ ..+++++.++.+.+|++..  ++.+..+..+
T Consensus       251 -dg~~l~~~--~~~v~~~d~~~~-~~~~~--~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~v~d~~~--~~~~~~~~~~  320 (337)
T 1pby_B          251 -AKTRAFGA--YNVLESFDLEKN-ASIKR--VPLPHSYYSVNVSTDG-STVWLGGALGDLAAYDAET--LEKKGQVDLP  320 (337)
T ss_dssp             -TSSEEEEE--ESEEEEEETTTT-EEEEE--EECSSCCCEEEECTTS-CEEEEESBSSEEEEEETTT--CCEEEEEECG
T ss_pred             -CCCEEEEe--CCeEEEEECCCC-cCcce--ecCCCceeeEEECCCC-CEEEEEcCCCcEEEEECcC--CcEEEEEEcC
Confidence             99988888  799999999874 44443  3455678999999997 5566667778888888766  4666666544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=6e-19  Score=161.44  Aligned_cols=287  Identities=10%  Similarity=0.038  Sum_probs=185.8

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccce--EEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNL--ELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      +.+++|+|++   ++||+++..... -..+.++.|++||+.+++ .+  ..+    ...+..++|||+    ++.|+.+.
T Consensus        62 ~~~~~~SpDg---~~la~~~~~~~~-~~~s~~~~i~~~d~~~g~-~~~~~~l----~~~~~~~~~SPD----G~~la~~~  128 (719)
T 1z68_A           62 ASNYGLSPDR---QFVYLESDYSKL-WRYSYTATYYIYDLSNGE-FVRGNEL----PRPIQYLCWSPV----GSKLAYVY  128 (719)
T ss_dssp             CSEEEECTTS---SEEEEEEEEEEC-SSSCEEEEEEEEETTTTE-ECCSSCC----CSSBCCEEECSS----TTCEEEEE
T ss_pred             eeeEEECCCC---CeEEEEecCcee-EEeecceEEEEEECCCCc-cccceec----CcccccceECCC----CCEEEEEE
Confidence            6788898877   888888711000 000015899999998875 10  222    256899999999    88999886


Q ss_pred             CCccE-EEecCCCccc-------CccE-----------------EEEEEcCCCCeEEEEecCC-----------------
Q 020107           90 ADGGL-LRDITGEKIS-------SSMC-----------------LCLEWNPSATSITVGLSDG-----------------  127 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~~-------~~~v-----------------~~~~~~~~~~~l~~~~~dg-----------------  127 (331)
                       ++.+ +|++.+++..       ...+                 .+++|+|||+.|++++.|.                 
T Consensus       129 -~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~  207 (719)
T 1z68_A          129 -QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYP  207 (719)
T ss_dssp             -TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSC
T ss_pred             -CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCc
Confidence             6677 9998765431       1112                 4899999999999987652                 


Q ss_pred             -----------------eEEEEEcccccee---ee---eeeecccceeEEEeeCCCCCcEEEEEcCC----CeEEEEE--
Q 020107          128 -----------------SVSIVSVVESQLE---VL---QQWKAHEFELWATSFDVHQPHMVYTGSDD----CKFSGWD--  178 (331)
Q Consensus       128 -----------------~i~i~d~~~~~~~---~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d--  178 (331)
                                       .|++||+.+++..   .+   ..+.+|...+..++|+| ++.++++....    ..|.+||  
T Consensus       208 ~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~  286 (719)
T 1z68_A          208 RTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFR  286 (719)
T ss_dssp             EEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEEC
T ss_pred             cceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEccc
Confidence                             7889999876531   11   12345788899999999 57777664322    3588899  


Q ss_pred             --ccCCCceeeee-cccCCCcceE-----EEEEecCCCCEEEE--EecCC--eEEEEEecCCCCCceeeeeecCCceEEE
Q 020107          179 --IRESPFKLAFQ-NSKIHKMGVC-----CIASIPSDSNTLLT--GSYDE--YLRVWDVRSISKPVNETSVCLGGGVWRI  246 (331)
Q Consensus       179 --~~~~~~~~~~~-~~~~~~~~v~-----~~~~~~~~~~~l~~--~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~  246 (331)
                        +.+++....+. ....|...+.     .+.|+| +++.|+.  ...++  .|.+||+... . ... +..+...+..+
T Consensus       287 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~-~-~~~-lt~~~~~v~~~  362 (719)
T 1z68_A          287 EDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVE-N-AIQ-ITSGKWEAINI  362 (719)
T ss_dssp             SSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCST-T-CEE-CSCSSSCEEEE
T ss_pred             CCCCCCceEEEEecccccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCC-c-eEe-cccCceEEEEE
Confidence              77766554442 0012566665     789999 8875544  44555  4666676653 2 222 34455567777


Q ss_pred             EECCCCCCeEEEEEec-----CcEEEEEEcCcccc-eeEEee----cCCcceeeeeecCCCCcccccccCcEEEEeecCC
Q 020107          247 KHHPFIPGLVLAACMH-----NGFAVVKVGGEKAE-VLETYA----KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD  316 (331)
Q Consensus       247 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~----~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d  316 (331)
                      .++ ++ +.++.++..     +..++|.+....+. ....+.    +|...+..+.|+|++.        .++++++ .+
T Consensus       363 ~~~-d~-~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~--------~l~~~~s-~~  431 (719)
T 1z68_A          363 FRV-TQ-DSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAK--------YYALVCY-GP  431 (719)
T ss_dssp             EEE-CS-SEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGS--------SEEEEEC-CB
T ss_pred             EEE-eC-CEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCC--------EEEEEcC-CC
Confidence            777 65 555555554     56778888653232 123333    2667788999999984        4444554 33


Q ss_pred             --CeEEEEcCCCcc
Q 020107          317 --RLLRIWMPESDC  328 (331)
Q Consensus       317 --~~i~iW~~~~~~  328 (331)
                        ..+.+|+++++.
T Consensus       432 ~~p~~~l~d~~~g~  445 (719)
T 1z68_A          432 GIPISTLHDGRTDQ  445 (719)
T ss_dssp             SSCEEEEECSSSCC
T ss_pred             CCCeEEEEECCCCC
Confidence              578899987764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=3.1e-19  Score=159.38  Aligned_cols=228  Identities=10%  Similarity=-0.028  Sum_probs=159.8

Q ss_pred             ecCcEeEEEEcCCCCCCCCeEEEEcC-CccE-EEecCCCcc-----cC-ccEEEEEEcCCCCeEEEEec---CCeEEEEE
Q 020107           65 DTAGIFDIKWSPVGGNAGPFLAQADA-DGGL-LRDITGEKI-----SS-SMCLCLEWNPSATSITVGLS---DGSVSIVS  133 (331)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i-iw~~~~~~~-----~~-~~v~~~~~~~~~~~l~~~~~---dg~i~i~d  133 (331)
                      +..+|++++|+|+    ++.||.++. ||.+ ||++.+++.     +. ..+..++|+|+ +.+++++.   +....+|.
T Consensus        20 ~~~~~~~~~~~~D----G~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           20 IAVEKYSLQGVVD----GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HHSCEEEEEEEET----TTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred             hccchheeecCCC----CCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence            3567999999999    999998887 9999 999866543     23 57889999999 77777664   45556665


Q ss_pred             ccc--cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107          134 VVE--SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       134 ~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      +..  .... . .+... ..+...+|+|+....+++...++.+.+||+.+++.......    ..  .+++|+| ++++|
T Consensus        95 ~~~~~~g~~-~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~----~~--~~~~~sp-DG~~l  164 (582)
T 3o4h_A           95 VNTSRPGEE-Q-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL----PG--FGFVSDI-RGDLI  164 (582)
T ss_dssp             EETTSTTCC-E-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE----SS--CEEEEEE-ETTEE
T ss_pred             EeccCCCcc-c-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC----CC--ceEEECC-CCCEE
Confidence            543  2111 1 22211 12335577774334444444445555999998865444433    22  7899999 99999


Q ss_pred             EEEecC----CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC--cEEEEEEcCcccceeEEeecCC
Q 020107          212 LTGSYD----EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN--GFAVVKVGGEKAEVLETYAKHG  285 (331)
Q Consensus       212 ~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~  285 (331)
                      ++++.+    +.|++||+.++ +.. . +..+.+.+..++|+|++ ..++++..++  .+.+|++..  ++.. .+.+|.
T Consensus       165 a~~~~~~~~~~~i~~~d~~~g-~~~-~-l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~--~~~~-~~~~~~  237 (582)
T 3o4h_A          165 AGLGFFGGGRVSLFTSNLSSG-GLR-V-FDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRD--GSVE-DLELPS  237 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTTC-CCE-E-ECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTT--CCEE-ECCCSC
T ss_pred             EEEEEcCCCCeEEEEEcCCCC-Cce-E-eecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCC--CcEE-EccCCC
Confidence            988877    78999999875 333 2 46788889999999997 4555444455  344444433  4544 677888


Q ss_pred             cceeeee--------ecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          286 SLAYGAD--------WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       286 ~~v~~~~--------~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                      ..+..++        |+|++         .++++++ .|+.+++|++
T Consensus       238 ~~~~~~~~~~~~~~~~spdg---------~~~~~~~-~~g~~~l~~~  274 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDG---------RLAVVAR-REGRSAVFID  274 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTS---------CEEEEEE-ETTEEEEEET
T ss_pred             cChhhhhhccccceeEcCCC---------cEEEEEE-cCCcEEEEEE
Confidence            8888888        99998         6899998 8999999998

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=2.6e-18  Score=145.57  Aligned_cols=273  Identities=10%  Similarity=-0.027  Sum_probs=169.3

Q ss_pred             EeeecCCCCCcEEEEEeecccCCCCCCCCC--cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc
Q 020107           15 VEFCPQDSYHHVLAASTYTLQEGDKPSRNG--SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG   92 (331)
Q Consensus        15 v~~~~~~~~~~~la~g~~~~~~~~~~~~~g--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg   92 (331)
                      .+|+|++   ++||.++.         .+|  .|.+||+.+.+  ...+...+...+..+.|+|+    ++.|+.++.++
T Consensus        41 ~~~SpDg---~~l~~~~~---------~~g~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~spd----g~~l~~~~~~~  102 (388)
T 3pe7_A           41 KCFTRDG---SKLLFGGA---------FDGPWNYYLLDLNTQV--ATQLTEGRGDNTFGGFLSPD----DDALFYVKDGR  102 (388)
T ss_dssp             CCBCTTS---CEEEEEEC---------TTSSCEEEEEETTTCE--EEECCCSSCBCSSSCEECTT----SSEEEEEETTT
T ss_pred             ccCCCCC---CEEEEEEc---------CCCCceEEEEeCCCCc--eEEeeeCCCCCccceEEcCC----CCEEEEEeCCC
Confidence            4566665   88888871         255  47778887764  45554555555667889999    99999999888


Q ss_pred             cE-EEecCCCcc------cCccEEEE--EEcCCCCeEEEE----------------------ecCCeEEEEEccccceee
Q 020107           93 GL-LRDITGEKI------SSSMCLCL--EWNPSATSITVG----------------------LSDGSVSIVSVVESQLEV  141 (331)
Q Consensus        93 ~i-iw~~~~~~~------~~~~v~~~--~~~~~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~  141 (331)
                      .+ +|++.+++.      +...+...  .++|+++.++..                      ..+..|.+||+.+++.  
T Consensus       103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~--  180 (388)
T 3pe7_A          103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES--  180 (388)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE--
T ss_pred             eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce--
Confidence            88 999988654      22223233  348899887743                      2347899999998764  


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEEccCCCceeeeecccCCC--cceEEEEEecCCCCEEEE
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWDIRESPFKLAFQNSKIHK--MGVCCIASIPSDSNTLLT  213 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~  213 (331)
                       ..+..+...+..++|+|.+++.|+....+      ..|.++|+..+... .+..   +.  ..+..+.|+| +++.|+.
T Consensus       181 -~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~---~~~~~~~~~~~~sp-dg~~l~~  254 (388)
T 3pe7_A          181 -TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKT---HAEGESCTHEFWVP-DGSALVY  254 (388)
T ss_dssp             -EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCC---CCTTEEEEEEEECT-TSSCEEE
T ss_pred             -EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Eeee---CCCCcccccceECC-CCCEEEE
Confidence             23334556788999998345666555543      37888887765433 3322   23  3578899999 8887755


Q ss_pred             Eec-CC----eEEEEEecCCCCCceeeeeecCCc---eEEEEECCCCCCeEEEE--------EecCcEEEEEEcCcccce
Q 020107          214 GSY-DE----YLRVWDVRSISKPVNETSVCLGGG---VWRIKHHPFIPGLVLAA--------CMHNGFAVVKVGGEKAEV  277 (331)
Q Consensus       214 ~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  277 (331)
                      .+. ++    .|.+||+.+++.........+...   ...++|+|++..++++.        ..+..+.+|++..   ..
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~---~~  331 (388)
T 3pe7_A          255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN---GT  331 (388)
T ss_dssp             EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT---TE
T ss_pred             EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC---Cc
Confidence            443 22    399999988642221111110000   11237899975444433        2334555666544   33


Q ss_pred             eEEeecCCc-----------ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          278 LETYAKHGS-----------LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       278 ~~~~~~h~~-----------~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      +..+..|..           .+..++|+|++         +.|+..+..++...||.++
T Consensus       332 ~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg---------~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          332 QHRVARHDTSWKVFEGDRQVTHPHPSFTPDD---------KQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             EEEEEECCCCCCCBTTBSSTTCCCCEECTTS---------SEEEEEECTTSSCEEEEEE
T ss_pred             eEEeccccCcccccccccccCCCCccCCCCC---------CEEEEEecCCCceeEEEEE
Confidence            445555555           57889999999         4565554267777776543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=6.8e-18  Score=154.75  Aligned_cols=258  Identities=11%  Similarity=0.043  Sum_probs=167.4

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCc-----EeEEEEcCCCCCCCC
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG-----IFDIKWSPVGGNAGP   83 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~   83 (331)
                      ..+...++|+|++   ++|+++            +|.|++|++.+++  ...+...|...     ..++.|||+    ++
T Consensus        16 ~~~~~~~~w~~dg---~~~~~~------------~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Spd----g~   74 (740)
T 4a5s_A           16 RLKLYSLRWISDH---EYLYKQ------------ENNILVFNAEYGN--SSVFLENSTFDEFGHSINDYSISPD----GQ   74 (740)
T ss_dssp             CCCCCCEEECSSS---EEEEEE------------TTEEEEEETTTCC--EEEEECTTTTTTCCSCCCEEEECTT----SS
T ss_pred             cccccccEECCCC---cEEEEc------------CCcEEEEECCCCc--eEEEEechhhhhhcccccceEECCC----CC
Confidence            3456789999887   777774            7899999999886  34455666532     245889999    99


Q ss_pred             eEEEEcCCc---------cE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc
Q 020107           84 FLAQADADG---------GL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH  148 (331)
Q Consensus        84 ~l~~~~~dg---------~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  148 (331)
                      +|+.++.+.         .+ +|++.+++.     +...+...+|+|||+.||.+ .++.|++|++.+++...+ +..++
T Consensus        75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~l-t~~g~  152 (740)
T 4a5s_A           75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI-TWTGK  152 (740)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC-CSCCB
T ss_pred             EEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEE-cCCCC
Confidence            999988763         34 999988764     35678999999999999888 468999999987754222 12222


Q ss_pred             ccee-----------------EEEeeCCCCCcEEEEEcCCC------------------------------------eEE
Q 020107          149 EFEL-----------------WATSFDVHQPHMVYTGSDDC------------------------------------KFS  175 (331)
Q Consensus       149 ~~~v-----------------~~~~~~~~~~~~l~~~~~dg------------------------------------~i~  175 (331)
                      ...+                 ..+.|+| +++.|+..+.|.                                    .|+
T Consensus       153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~  231 (740)
T 4a5s_A          153 EDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF  231 (740)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred             ccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence            2212                 3589999 778777764221                                    578


Q ss_pred             EEEccC---CCc--eeeeecc---cCCCcceEEEEEecCCCCEEEEEec----CCeEEEEEecCCC----C--Cceeeee
Q 020107          176 GWDIRE---SPF--KLAFQNS---KIHKMGVCCIASIPSDSNTLLTGSY----DEYLRVWDVRSIS----K--PVNETSV  237 (331)
Q Consensus       176 i~d~~~---~~~--~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~----~--~~~~~~~  237 (331)
                      +||+.+   ++.  ...+...   .+|...+..++|+| +++.++....    +..|.+||+.+++    .  .......
T Consensus       232 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~  310 (740)
T 4a5s_A          232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM  310 (740)
T ss_dssp             EEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred             EEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec
Confidence            899988   632  2222210   02677899999999 8886665533    3479999999864    1  1111114


Q ss_pred             ecCCceE-----EEEECCCCCCeEEEEEec-CcEEEEEEcCcccceeEEeecCCcceeeee
Q 020107          238 CLGGGVW-----RIKHHPFIPGLVLAACMH-NGFAVVKVGGEKAEVLETYAKHGSLAYGAD  292 (331)
Q Consensus       238 ~~~~~v~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  292 (331)
                      .+.+.|.     ...|+|++..+++..+.. +...++.+... +.....+....-.|..+.
T Consensus       311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~-~~~~~~lT~g~~~v~~~~  370 (740)
T 4a5s_A          311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID-KKDCTFITKGTWEVIGIE  370 (740)
T ss_dssp             CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT-CSSCEESCCSSSCEEEEE
T ss_pred             cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC-CCceEecccCCEEEEEEE
Confidence            4555554     789999984444244433 33444444433 333344444444555543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=5e-17  Score=136.64  Aligned_cols=240  Identities=9%  Similarity=-0.010  Sum_probs=158.8

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEecc-CcccceEEeEeee-cCcEeEEEEcCCCCCCCCe--EE
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVN-AEEKNLELLYRMD-TAGIFDIKWSPVGGNAGPF--LA   86 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~--l~   86 (331)
                      .+..++++|.+   ++|++++          .+ .|.+|++. +++  +....... .+.+..++|+|+    +++  ++
T Consensus        41 ~~~~~a~spdg---~~l~~~~----------~~-~v~~~~~~~~g~--~~~~~~~~~~g~~~~~~~spd----g~~l~~~  100 (365)
T 1jof_A           41 PISWMTFDHER---KNIYGAA----------MK-KWSSFAVKSPTE--IVHEASHPIGGHPRANDADTN----TRAIFLL  100 (365)
T ss_dssp             CCSEEEECTTS---SEEEEEE----------BT-EEEEEEEEETTE--EEEEEEEECCSSGGGGCTTSC----CEEEEEE
T ss_pred             CCcEEEECCCC---CEEEEEc----------cc-eEEEEEECCCCC--EEEeeEeecCCCCccEEECCC----CCEEEEE
Confidence            45667777766   7888887          34 89999997 443  32222211 133667899999    774  45


Q ss_pred             EEc-------------CCccE-EEecCC-Ccc----------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEcc-ccce
Q 020107           87 QAD-------------ADGGL-LRDITG-EKI----------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVV-ESQL  139 (331)
Q Consensus        87 ~~~-------------~dg~i-iw~~~~-~~~----------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~-~~~~  139 (331)
                      +++             .+|.+ +|++.. ++.          +...+.+++|+|+|++++++.. ++.|++|++. +++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~  180 (365)
T 1jof_A          101 AAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV  180 (365)
T ss_dssp             ECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred             EecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE
Confidence            554             57888 998863 321          2356889999999998887764 7899999998 6665


Q ss_pred             eeeeeee--cccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEcc--CCCcee---eeeccc----CCCc------ceEEE
Q 020107          140 EVLQQWK--AHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIR--ESPFKL---AFQNSK----IHKM------GVCCI  201 (331)
Q Consensus       140 ~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~---~~~~~~----~~~~------~v~~~  201 (331)
                      ..+..+.  .+...+..++|+| +++++++++ .++.|.+|++.  +++...   .+...+    +|..      .+..+
T Consensus       181 ~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  259 (365)
T 1jof_A          181 ELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV  259 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred             EEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccE
Confidence            4444443  2356689999999 777776655 57899999876  344321   122211    1222      58899


Q ss_pred             E-EecCCCCEEEEEecC-C-----eEEEEEecCCCCCcee--eeeecCCceEEEEECC---CCCCeEEEEEe-cCcEEEE
Q 020107          202 A-SIPSDSNTLLTGSYD-E-----YLRVWDVRSISKPVNE--TSVCLGGGVWRIKHHP---FIPGLVLAACM-HNGFAVV  268 (331)
Q Consensus       202 ~-~~~~~~~~l~~~~~d-~-----~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~---~~~~~~~~~~~-~~~~~~~  268 (331)
                      + |+| ++++|+++..+ +     .|.+|++....+....  ....+...+..++|+|   ++ ..+++++. ++.+.+|
T Consensus       260 ~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg-~~l~v~~~~~~~v~v~  337 (365)
T 1jof_A          260 CALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIY  337 (365)
T ss_dssp             EEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEE
T ss_pred             EEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC-CEEEEEEcCCCeEEEE
Confidence            9 999 99888777643 2     8999999732232211  1122455677899999   66 56666655 4788889


Q ss_pred             EEcCc
Q 020107          269 KVGGE  273 (331)
Q Consensus       269 ~~~~~  273 (331)
                      ++...
T Consensus       338 ~~~~~  342 (365)
T 1jof_A          338 RWKDE  342 (365)
T ss_dssp             EEETT
T ss_pred             EEchh
Confidence            88764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=1.3e-16  Score=132.03  Aligned_cols=241  Identities=9%  Similarity=0.048  Sum_probs=171.8

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCC------------------------ccE-EEecCCCcc-------cCccEEEEEE
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADAD------------------------GGL-LRDITGEKI-------SSSMCLCLEW  113 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~d------------------------g~i-iw~~~~~~~-------~~~~v~~~~~  113 (331)
                      -+.+.+|+++|+    ++++++...+                        +.+ +|+..+++.       +-.....+++
T Consensus        23 l~~v~~va~d~~----G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~   98 (329)
T 3fvz_A           23 PGQVSGVALDSK----NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSI   98 (329)
T ss_dssp             CSCEEEEEECTT----CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEE
T ss_pred             cCCceEEEECCC----CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEE
Confidence            356999999999    8888888877                        356 888876543       1246789999


Q ss_pred             cCCCCeEEEEecCCeEEEEEccccceeeeeee---------ecccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEccCCC
Q 020107          114 NPSATSITVGLSDGSVSIVSVVESQLEVLQQW---------KAHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIRESP  183 (331)
Q Consensus       114 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  183 (331)
                      +++++.+++...++.|++|+..... ..+..+         ..+......++++|.++.++++.+ .++.|++||. .++
T Consensus        99 d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~  176 (329)
T 3fvz_A           99 DTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGK  176 (329)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSC
T ss_pred             CCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCC
Confidence            9999988888889999999986532 123333         233446889999985677778776 6999999994 455


Q ss_pred             ceeeeecc-------cCCCcceEEEEEecCC-CCEEEEEecCCeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCC
Q 020107          184 FKLAFQNS-------KIHKMGVCCIASIPSD-SNTLLTGSYDEYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPG  254 (331)
Q Consensus       184 ~~~~~~~~-------~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~  254 (331)
                      ....+...       +.+-..+..|+++| + +.++++...++.|++||..++ +.+..+. ..+...+..++++| + .
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~p-g-~  252 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISYIP-G-F  252 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEEET-T-E
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeeecC-C-E
Confidence            45444321       01223489999999 6 788888888999999999864 3333311 23566789999999 2 3


Q ss_pred             eEEEEE-------ecCcEEEEEEcCcccceeEEee---cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          255 LVLAAC-------MHNGFAVVKVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       255 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                      .+.+.+       ....+.+|+...  ++.+..+.   ++.....+++++|++         .++++.. .++.|++|++
T Consensus       253 ~~~~~g~~~v~~~~~~~v~~~~~~~--g~~~~~~~~~~~~~~~p~~ia~~~dG---------~lyvad~-~~~~I~~~~~  320 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQGFVMNFSS--GEIIDVFKPVRKHFDMPHDIVASEDG---------TVYIGDA-HTNTVWKFTL  320 (329)
T ss_dssp             EEEEECCCCTTCSCCCCEEEEETTT--CCEEEEECCSSSCCSSEEEEEECTTS---------EEEEEES-SSCCEEEEEE
T ss_pred             EEEeCCCEEeccCCCcEEEEEEcCC--CeEEEEEcCCCCccCCeeEEEECCCC---------CEEEEEC-CCCEEEEEeC
Confidence            333322       123566666554  67777763   567788999999998         6888888 8999999998


Q ss_pred             CCcc
Q 020107          325 ESDC  328 (331)
Q Consensus       325 ~~~~  328 (331)
                      +...
T Consensus       321 ~~~~  324 (329)
T 3fvz_A          321 TEKM  324 (329)
T ss_dssp             EECS
T ss_pred             Cccc
Confidence            6543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=5.7e-16  Score=129.73  Aligned_cols=255  Identities=13%  Similarity=0.080  Sum_probs=168.9

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC----------CccE-EEecCCCccc-------
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA----------DGGL-LRDITGEKIS-------  104 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------dg~i-iw~~~~~~~~-------  104 (331)
                      ++.|++||..+.+ .+..+ ..+..+  .++|+|+    ++++++++.          ++.+ +|+..+.+..       
T Consensus        30 d~~v~v~D~~t~~-~~~~i-~~g~~p--~i~~spd----g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~  101 (361)
T 2oiz_A           30 ESRVHVYDYTNGK-FLGMV-PTAFNG--HVQVSND----GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP  101 (361)
T ss_dssp             GCEEEEEETTTCC-EEEEE-ECCEEE--EEEECTT----SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred             cCeEEEEECCCCe-EEEEe-cCCCCC--ceEECCC----CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence            7799999988775 33333 333333  8999999    899988863          4556 9998765432       


Q ss_pred             -----CccEEEEEEcCCCCeEEEEec--CCeEEEEEccccceeeeee-eecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107          105 -----SSMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQQ-WKAHEFELWATSFDVHQPHMVYTGSDDCKFSG  176 (331)
Q Consensus       105 -----~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (331)
                           ......++++|++++|+++..  +++|.+||+.+++.  +.. +.. .. ...+.+.|.....+++.+.||.+.+
T Consensus       102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~--~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~  177 (361)
T 2oiz_A          102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY--VEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLT  177 (361)
T ss_dssp             TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE--EEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEE
T ss_pred             cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE--EEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEE
Confidence                 123457899999999999874  68999999998754  454 432 21 2335667755577888899999999


Q ss_pred             EEccC-CCceeeee---cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee------c----CCc
Q 020107          177 WDIRE-SPFKLAFQ---NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC------L----GGG  242 (331)
Q Consensus       177 ~d~~~-~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~----~~~  242 (331)
                      |++.. ++......   .......++ .+.+.| ++..++..+.++.|.++|+......+......      .    ...
T Consensus       178 v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g  255 (361)
T 2oiz_A          178 INLGEDGKVASQSRSKQMFSVKDDPI-FIAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG  255 (361)
T ss_dssp             EEECTTSSEEEEEECCCCSCTTTSCB-CSCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred             EEECCCCcEeeeccccceEcCCCCce-EEEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence            99875 43221111   111122222 333466 66677777789999999997542221110000      0    111


Q ss_pred             eEEEEECCCCCCeEEEEEe-----------cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107          243 VWRIKHHPFIPGLVLAACM-----------HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVAT  311 (331)
Q Consensus       243 v~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  311 (331)
                      ...++|+|++ +.++++..           .+.+.+|++..  .+.+.++..+.  +.+++|+|++         ++|++
T Consensus       256 ~~~~a~~~dg-~~lyv~~~~~~~~~~~~~~~~~v~viD~~t--~~~v~~i~~~~--p~~ia~spdg---------~~l~v  321 (361)
T 2oiz_A          256 YNLVGLHRAS-GRMYVFMHPDGKEGTHKFPAAEIWVMDTKT--KQRVARIPGRD--ALSMTIDQQR---------NLMLT  321 (361)
T ss_dssp             SSCEEEETTT-TEEEEEEESSCCTTCTTCCCSEEEEEETTT--TEEEEEEECTT--CCEEEEETTT---------TEEEE
T ss_pred             eeEEEEecCC-CeEEEEEccCCCcccccCCCceEEEEECCC--CcEEEEEecCC--eeEEEECCCC---------CEEEE
Confidence            2237899997 44444433           23566666555  68888888776  9999999999         68888


Q ss_pred             eecCCCeEEEEcCCCc
Q 020107          312 CSFYDRLLRIWMPESD  327 (331)
Q Consensus       312 ~~~~d~~i~iW~~~~~  327 (331)
                      ++ . +.|.+||++++
T Consensus       322 ~n-~-~~v~v~D~~t~  335 (361)
T 2oiz_A          322 LD-G-GNVNVYDISQP  335 (361)
T ss_dssp             EC-S-SCEEEEECSSS
T ss_pred             eC-C-CeEEEEECCCC
Confidence            87 6 99999999987

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=4.5e-17  Score=149.37  Aligned_cols=237  Identities=8%  Similarity=-0.015  Sum_probs=157.5

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc------C-----ccEEEEEEcCCCCeEEEEecC---------
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS------S-----SMCLCLEWNPSATSITVGLSD---------  126 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~------~-----~~v~~~~~~~~~~~l~~~~~d---------  126 (331)
                      ....++|+|+    +++++++  |+.+ +|++.+++..      .     .....++|+|||+.|+.++.+         
T Consensus        18 ~~~~~~w~~d----g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           18 KLYSLRWISD----HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCEEECSS----SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             cccccEECCC----CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            4668999999    8888886  8888 9999877641      1     122347899999999998876         


Q ss_pred             CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcce--------
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV--------  198 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v--------  198 (331)
                      +.+.+||+.+++.   ..+..+...+...+|+| +++.|+.+. ++.|++||+.+++..+. .. .++...+        
T Consensus        92 ~~~~~~d~~~~~~---~~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~l-t~-~g~~~~~~~g~~~~v  164 (740)
T 4a5s_A           92 ASYDIYDLNKRQL---ITEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRI-TW-TGKEDIIYNGITDWV  164 (740)
T ss_dssp             EEEEEEETTTTEE---CCSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEEC-CS-CCBTTTEEESBCCHH
T ss_pred             eEEEEEECCCCcE---EEcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEE-cC-CCCccceecCccccc
Confidence            5677999998864   33555677899999999 778888775 78999999988764332 21 1122222        


Q ss_pred             ---------EEEEEecCCCCEEEEEecCC------------------------------------eEEEEEecC---CCC
Q 020107          199 ---------CCIASIPSDSNTLLTGSYDE------------------------------------YLRVWDVRS---ISK  230 (331)
Q Consensus       199 ---------~~~~~~~~~~~~l~~~~~d~------------------------------------~i~iwd~~~---~~~  230 (331)
                               ..+.|+| |++.|+..+.|.                                    .|++||+.+   ++.
T Consensus       165 ~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~  243 (740)
T 4a5s_A          165 YEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN  243 (740)
T ss_dssp             HHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred             ccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence                     3589999 999998876432                                    477788876   421


Q ss_pred             -Cceeeee-----ecCCceEEEEECCCCCCeEEEEEecC----cEEEEEEcCcc----cceeEEe--ecCCccee-----
Q 020107          231 -PVNETSV-----CLGGGVWRIKHHPFIPGLVLAACMHN----GFAVVKVGGEK----AEVLETY--AKHGSLAY-----  289 (331)
Q Consensus       231 -~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~--~~h~~~v~-----  289 (331)
                       ....+..     .+...+..++|+|++ ..++.....+    .+.+|++....    ...+..+  .+|...|.     
T Consensus       244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~  322 (740)
T 4a5s_A          244 ATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS  322 (740)
T ss_dssp             CCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred             ceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence             1222111     266779999999996 3343333221    36666665532    0011112  34555554     


Q ss_pred             eeeecCCCCcccccccCcEEE-EeecCC--CeEEEEcCCCcc
Q 020107          290 GADWQRGRSSLEGKRKNSLVA-TCSFYD--RLLRIWMPESDC  328 (331)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~-s~~~~d--~~i~iW~~~~~~  328 (331)
                      ...|+|++         +.|+ ..+..+  ..|++|+++++.
T Consensus       323 ~p~fspDG---------~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          323 EPHFTLDG---------NSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             CCEECTTS---------SEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             CceEcCCC---------CEEEEEEEcCCCceEEEEEECCCCc
Confidence            78999999         4555 555133  468888887664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=3.4e-16  Score=141.93  Aligned_cols=279  Identities=9%  Similarity=-0.055  Sum_probs=175.8

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEe---------EEEEc--CCC
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIF---------DIKWS--PVG   78 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~   78 (331)
                      ..+..+++++..   .+++.+.        ...++...||...... ....+ ..|...+.         ...|+  |+ 
T Consensus        24 ~~~~~~~~s~~~---~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPD-   89 (662)
T 3azo_A           24 GRPACVGAVGDE---VWWVAPR--------PAEAGRATLVRRRADG-AEESA-LPAPWNVRNRVFEYSGFPWAGVPRPA-   89 (662)
T ss_dssp             SCCEEEEEETTE---EEEEEEE--------TTTTTEEEEEEECTTS-CEEES-SCTTCCBCCCGGGTCCCCEEEECCSS-
T ss_pred             CccceeEEcCCe---EEEEecC--------cccCCcEEEEEECCCC-Cccee-CCCCccccccccccCCccceeeeecC-
Confidence            356677777543   4555552        0147889999864433 33333 44555555         66666  88 


Q ss_pred             CCCCCe-EEEEcC-CccE-EEecC--C-Ccc----------cCccEEEEEEcCCCCeEEEEecC----------CeEEEE
Q 020107           79 GNAGPF-LAQADA-DGGL-LRDIT--G-EKI----------SSSMCLCLEWNPSATSITVGLSD----------GSVSIV  132 (331)
Q Consensus        79 ~~~~~~-l~~~~~-dg~i-iw~~~--~-~~~----------~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~  132 (331)
                         ++. |+.++. +..+ ++++.  + ...          +...+..++|+|||+.|++++.+          ..|++|
T Consensus        90 ---g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           90 ---GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             ---SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             ---CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence               777 666654 4445 66655  2 221          23467899999999999998876          589999


Q ss_pred             Eccc------cceeeeeeee-cccceeEEEeeCCCCCcEEEEEcCC--------CeEEEEEcc-CC---CceeeeecccC
Q 020107          133 SVVE------SQLEVLQQWK-AHEFELWATSFDVHQPHMVYTGSDD--------CKFSGWDIR-ES---PFKLAFQNSKI  193 (331)
Q Consensus       133 d~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~  193 (331)
                      |+.+      ++.   ..+. .+...+..++|+| +++.|+.++.+        ..|++||+. ++   +.......   
T Consensus       167 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~---  239 (662)
T 3azo_A          167 PLDGSAAADRSAV---RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG---  239 (662)
T ss_dssp             ETTSTTTTCGGGS---EESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE---
T ss_pred             ECCCCccccCCce---eEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC---
Confidence            9987      543   3333 4556788899999 77888776644        479999998 46   32222222   


Q ss_pred             CCcceEEEEEecCCCCEEEEEecCC--eEEEEEecCCCCCceeeeeecCCc--------eEEEEECCCCCCeEEEEEecC
Q 020107          194 HKMGVCCIASIPSDSNTLLTGSYDE--YLRVWDVRSISKPVNETSVCLGGG--------VWRIKHHPFIPGLVLAACMHN  263 (331)
Q Consensus       194 ~~~~v~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~~~~~~~  263 (331)
                      |...+..+.|+| ++++++++..++  .|.+||+.++ + ...+...+...        +..++|+|++ .+++++.. +
T Consensus       240 ~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~-~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~  314 (662)
T 3azo_A          240 PEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATG-A-ATQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-G  314 (662)
T ss_dssp             TTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTC-C-EEESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-S
T ss_pred             CCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCC-c-eeecccccccccCccccccCceEeEeCCC-EEEEEEEc-C
Confidence            578899999999 888888888888  5555555443 2 22211122111        4678888885 45555555 7


Q ss_pred             cEEEEEEcCcccceeEEeecCCcceeee-eecCCCCcccccccCcEEEEeecCCC--eEEEEcCCCcc
Q 020107          264 GFAVVKVGGEKAEVLETYAKHGSLAYGA-DWQRGRSSLEGKRKNSLVATCSFYDR--LLRIWMPESDC  328 (331)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~l~s~~~~d~--~i~iW~~~~~~  328 (331)
                      ..++|.+... ...+..+..|...+..+ +++.+          .+++++++.+.  .|.+|+++++.
T Consensus       315 ~~~l~~~d~~-~~~~~~l~~~~~~~~~~~s~~~~----------~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          315 AAVLGILDPE-SGELVDAAGPWTEWAATLTVSGT----------RAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             SCEEEEEETT-TTEEEECCSSCCEEEEEEEEETT----------EEEEEEEETTEEEEEEEEETTTCC
T ss_pred             ccEEEEEECC-CCcEEEecCCCCeEEEEEecCCC----------EEEEEEcCCCCCCEEEEEECCCCc
Confidence            7788877654 23467777787777777 54443          34444331554  45555665553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.76  E-value=1.7e-15  Score=138.39  Aligned_cols=242  Identities=9%  Similarity=-0.027  Sum_probs=162.0

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCc-----cE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEecCCe-------
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADG-----GL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLSDGS-------  128 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~-------  128 (331)
                      ..+..++|||+    +++||.+..++     .+ +|++.+++..     ...+..++|+||++.|+.++.++.       
T Consensus       125 ~~~~~~~~SPD----g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          125 VALRGYAFSED----GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             EEEEEEEECTT----SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             EEEEEEEECCC----CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            46889999999    88888765533     56 9999887653     122457899999999999888765       


Q ss_pred             ---------EEEEEccccceeeeeeee--cccceeEEEeeCCCCCcEEEEEcC-----CCeEEEEEccC------CC-ce
Q 020107          129 ---------VSIVSVVESQLEVLQQWK--AHEFELWATSFDVHQPHMVYTGSD-----DCKFSGWDIRE------SP-FK  185 (331)
Q Consensus       129 ---------i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~  185 (331)
                               |++|++.+++......+.  .+...+..+.|+| ++++|+..+.     +..|++||+.+      +. ..
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence                     999999876532222222  3455578999999 7777766553     57899999986      43 23


Q ss_pred             eeeecccCCCcceEEEEEecCCCCEEEEEecC----CeEEEEEecCCCC-CceeeeeecCC--ceEEEEECCCCCCeEEE
Q 020107          186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD----EYLRVWDVRSISK-PVNETSVCLGG--GVWRIKHHPFIPGLVLA  258 (331)
Q Consensus       186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~-~~~~~~~~~~~--~v~~~~~~~~~~~~~~~  258 (331)
                      ..+..   +...+.. .|+| ++..|+..+..    +.|.+||+.+... .... +..+..  .+..+.|++++ .++++
T Consensus       280 ~~l~~---~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~-~lv~~  352 (710)
T 2xdw_A          280 VKLID---NFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV-LVPEHEKDVLEWVACVRSN-FLVLC  352 (710)
T ss_dssp             EEEEC---SSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE-EECCCSSCEEEEEEEETTT-EEEEE
T ss_pred             EEeeC---CCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCccccee-ccCCCCCCeEEEEEEEcCC-EEEEE
Confidence            34443   4555554 4788 77776666543    3699999987532 1233 344433  68889998652 44444


Q ss_pred             EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCcc
Q 020107          259 ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDC  328 (331)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~  328 (331)
                      ...++..+++.+....++.+..+..+.+.+..+.++|++.        .++++.++  ..++|++||+.++.
T Consensus       353 ~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          353 YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT--------EIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS--------EEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC--------EEEEEEeCCCCCCEEEEEECCCCc
Confidence            4444444455544323566677777788899999999874        44444431  45799999998765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=2.1e-15  Score=122.26  Aligned_cols=234  Identities=9%  Similarity=0.028  Sum_probs=164.2

Q ss_pred             ecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEE-cCCCCeEEEEec-CCeEE
Q 020107           65 DTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEW-NPSATSITVGLS-DGSVS  130 (331)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~-~~~~~~l~~~~~-dg~i~  130 (331)
                      +-..+.+++++|+    +.++++...++.+ +|+......           +...+..+++ .+++..+++... ++.|.
T Consensus        28 ~~~~p~~v~~~~~----g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           28 QFTEPSGVAVNAQ----NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             CBSCEEEEEECTT----CCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             ccCCCceEEECCC----CCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            4456899999999    8888888888888 887664321           1246789999 466666665543 89999


Q ss_pred             EEEccccceeeeeeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107          131 IVSVVESQLEVLQQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN  209 (331)
Q Consensus       131 i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  209 (331)
                      +||. +++.  +..+. .+...+..++++| +++++++...++.|.+||.. ++....+.. ..+...+..++++| +++
T Consensus       104 ~~d~-~g~~--~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~p~~i~~~~-~g~  176 (286)
T 1q7f_A          104 IYNQ-YGQF--VRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGC-SKHLEFPNGVVVND-KQE  176 (286)
T ss_dssp             EECT-TSCE--EEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEEC-TTTCSSEEEEEECS-SSE
T ss_pred             EECC-CCcE--EEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCC-CCccCCcEEEEECC-CCC
Confidence            9994 4433  33343 2345688999998 67888888888999999965 443444432 12455789999999 888


Q ss_pred             EEEEEecCCeEEEEEecCCCCCceeeeeec--CCceEEEEECCCCCCeEEEEEecC-cEEEEEEcCcccceeEEeecCCc
Q 020107          210 TLLTGSYDEYLRVWDVRSISKPVNETSVCL--GGGVWRIKHHPFIPGLVLAACMHN-GFAVVKVGGEKAEVLETYAKHGS  286 (331)
Q Consensus       210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~  286 (331)
                      ++++...++.|++||...  ..+.. +...  ...+..++++|++ .++++...++ .+.+|+.   .++.+..+..+..
T Consensus       177 l~v~~~~~~~i~~~~~~g--~~~~~-~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~---~g~~~~~~~~~~~  249 (286)
T 1q7f_A          177 IFISDNRAHCVKVFNYEG--QYLRQ-IGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ---DGQLISALESKVK  249 (286)
T ss_dssp             EEEEEGGGTEEEEEETTC--CEEEE-ESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT---TSCEEEEEEESSC
T ss_pred             EEEEECCCCEEEEEcCCC--CEEEE-EccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECC---CCCEEEEEcccCC
Confidence            888888899999999753  33333 1222  2568899999986 5555554554 7777763   2566666665433


Q ss_pred             --ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          287 --LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       287 --~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                        .+.+++++|++         +++++ + .|++|++|++...
T Consensus       250 ~~~~~~i~~~~~g---------~l~vs-~-~~~~v~v~~~~~~  281 (286)
T 1q7f_A          250 HAQCFDVALMDDG---------SVVLA-S-KDYRLYIYRYVQL  281 (286)
T ss_dssp             CSCEEEEEEETTT---------EEEEE-E-TTTEEEEEECSCC
T ss_pred             CCcceeEEECCCC---------cEEEE-C-CCCeEEEEEcccc
Confidence              47799999998         67776 6 6999999998653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=7.7e-15  Score=121.43  Aligned_cols=247  Identities=10%  Similarity=0.008  Sum_probs=167.7

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCC--------------CCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEG--------------DKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWS   75 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~--------------~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~   75 (331)
                      +.+..|++.|.+   +++++...+..-.              .....++.|.+||..++. .+......+......++++
T Consensus        24 ~~v~~va~d~~G---~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           24 GQVSGVALDSKN---NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-ILQSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             SCEEEEEECTTC---CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC-EEEEECTTTCSSEEEEEEC
T ss_pred             CCceEEEECCCC---CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe-EEeccCCCccCCceEEEEC
Confidence            457788888776   7887776210000              000012579999988765 2332222334578999999


Q ss_pred             CCCCCCCCeEEEEcCCccE-EEecCCCc--c--------------cCccEEEEEEcC-CCCeEEEEe-cCCeEEEEEccc
Q 020107           76 PVGGNAGPFLAQADADGGL-LRDITGEK--I--------------SSSMCLCLEWNP-SATSITVGL-SDGSVSIVSVVE  136 (331)
Q Consensus        76 ~~~~~~~~~l~~~~~dg~i-iw~~~~~~--~--------------~~~~v~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~  136 (331)
                      |+    +.++++...++.+ +|+.....  .              +-.....++++| ++..+++.+ .++.|++|+.. 
T Consensus       100 ~~----g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-  174 (329)
T 3fvz_A          100 TD----GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-  174 (329)
T ss_dssp             TT----SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-
T ss_pred             CC----CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-
Confidence            99    8888888888888 88876541  1              122578999999 677777775 68999999954 


Q ss_pred             cceeeeeeeec----------ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107          137 SQLEVLQQWKA----------HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS  206 (331)
Q Consensus       137 ~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  206 (331)
                      ++.  +..+..          +-.....++++|+.+.++++...++.|++||..+++....+.. ..+...+..++++| 
T Consensus       175 g~~--~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~p-  250 (329)
T 3fvz_A          175 GKF--VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIP-  250 (329)
T ss_dssp             SCE--EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEET-
T ss_pred             CCE--EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecC-
Confidence            433  333321          2234789999984478888888999999999998877666654 33667888999988 


Q ss_pred             CCCEEEEEe-------cCCeEEEEEecCCCCCceeee--eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          207 DSNTLLTGS-------YDEYLRVWDVRSISKPVNETS--VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       207 ~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                       +..+++.+       .+..|++||+.++ +.+..+.  ..+...+..++++|++ .++++...++.|++|++..
T Consensus       251 -g~~~~~~g~~~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          251 -GFLFAVNGKPYFGDQEPVQGFVMNFSSG-EIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             -TEEEEEECCCCTTCSCCCCEEEEETTTC-CEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEE
T ss_pred             -CEEEEeCCCEEeccCCCcEEEEEEcCCC-eEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCc
Confidence             43444333       3448999999875 4343311  2455678999999996 6666666778888887754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=5.9e-17  Score=137.50  Aligned_cols=276  Identities=11%  Similarity=0.009  Sum_probs=166.8

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD   91 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   91 (331)
                      +..++|+|++   ++||.....       ..+..|.+|++.+++  ...+...+......+.|+|+    ++.|+.++.+
T Consensus        38 ~~~~~~SpdG---~~l~~~~~~-------~g~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~spd----g~~l~~~~~~  101 (396)
T 3c5m_A           38 FYQKCFTQDG---KKLLFAGDF-------DGNRNYYLLNLETQQ--AVQLTEGKGDNTFGGFISTD----ERAFFYVKNE  101 (396)
T ss_dssp             TTSCCBCTTS---CEEEEEECT-------TSSCEEEEEETTTTE--EEECCCSSCBCTTTCEECTT----SSEEEEEETT
T ss_pred             eecCcCCCCC---CEEEEEEec-------CCCceEEEEECCCCc--EEEeecCCCCccccceECCC----CCEEEEEEcC
Confidence            4566777766   787777510       023468888887764  33342323222334889999    8999998888


Q ss_pred             ccE-EEecCCCccc------CccEEE-------------------EEEcCCCCeEEEE-----ecCCeEEEEEcccccee
Q 020107           92 GGL-LRDITGEKIS------SSMCLC-------------------LEWNPSATSITVG-----LSDGSVSIVSVVESQLE  140 (331)
Q Consensus        92 g~i-iw~~~~~~~~------~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~  140 (331)
                      +.+ +|++.+.+..      ......                   +.|+|+++.++..     ..+..|.+||+.+++..
T Consensus       102 ~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~  181 (396)
T 3c5m_A          102 LNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE  181 (396)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE
T ss_pred             CcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE
Confidence            888 9998775431      111111                   3467777766554     35678999999887643


Q ss_pred             eeeeeecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107          141 VLQQWKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      .+   ..+...+..+.|+|.++..|+..+.+      ..|.+||+..++.......  .....+..+.|+| +++.|+..
T Consensus       182 ~~---~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~--~~~~~~~~~~~sp-dg~~l~~~  255 (396)
T 3c5m_A          182 VI---HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH--AEGESCTHEFWIP-DGSAMAYV  255 (396)
T ss_dssp             EE---EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC--CTTEEEEEEEECT-TSSCEEEE
T ss_pred             ee---ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc--CCCccccceEECC-CCCEEEEE
Confidence            22   24566788999998445555554433      4688889876543222221  0134688899999 88877776


Q ss_pred             ecC-----CeEEEEEecCCCCCceeeeeecCCceEEEEECC-CCCCeEEEEEe----------------cCcEEEEEEcC
Q 020107          215 SYD-----EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP-FIPGLVLAACM----------------HNGFAVVKVGG  272 (331)
Q Consensus       215 ~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~  272 (331)
                      +.+     +.|.+||+.+++ ....  ....+ .. +.|+| ++ ..++.++.                +..+.+|++..
T Consensus       256 ~~~~~~~~~~l~~~d~~~g~-~~~l--~~~~~-~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          256 SYFKGQTDRVIYKANPETLE-NEEV--MVMPP-CS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             EEETTTCCEEEEEECTTTCC-EEEE--EECCS-EE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred             ecCCCCccceEEEEECCCCC-eEEe--eeCCC-CC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence            554     459999998753 2221  22222 33 89999 87 45554432                24455565543


Q ss_pred             cccceeEEeecCCc-----------ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE--cCCCc
Q 020107          273 EKAEVLETYAKHGS-----------LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW--MPESD  327 (331)
Q Consensus       273 ~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW--~~~~~  327 (331)
                        ++. ..+..+..           .+..+.|+|++         +.|+.++..++...+|  +++++
T Consensus       330 --~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg---------~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          330 --KSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPND---------DGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             --TBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTS---------SEEEEEECTTSSCEEEEEECCTT
T ss_pred             --Cce-EEccCCCCccccccccccCCCCCceEccCC---------CeEEEEecCCCCceEEEEEEccc
Confidence              232 33444443           25678999998         5666655245655555  44444

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=7.5e-15  Score=121.68  Aligned_cols=255  Identities=9%  Similarity=0.025  Sum_probs=167.5

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+.++.|.+..   ..++...          .++.++.|.  ..  .+..+ ..+...+.+++|+|+    +++++++..
T Consensus         7 ~~~~~~~~~~~---~~~~~~~----------~~~~~~~~~--~~--~~~~~-~~~~~~~~~~~~~~~----g~l~~~~~~   64 (333)
T 2dg1_A            7 DLPTLFYSGKS---NSAVPII----------SESELQTIT--AE--PWLEI-SKKGLQLEGLNFDRQ----GQLFLLDVF   64 (333)
T ss_dssp             CCCBCCSCGGG---GCSSCCC----------CGGGSCEEE--CE--EEEEE-ESSCCCEEEEEECTT----SCEEEEETT
T ss_pred             ccceeeecCCc---cceeEEe----------ecccCcccc--cc--eeEEE-eccCccccCcEECCC----CCEEEEECC
Confidence            45667777665   4444433          488899992  11  23333 445566899999998    888888888


Q ss_pred             CccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecC----CeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107           91 DGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSD----GSVSIVSVVESQLEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        91 dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (331)
                      ++.+ +|+..+.+.      +...+.+++++++++++++...+    +.|.+||.++++...+.........+.+++++|
T Consensus        65 ~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~  144 (333)
T 2dg1_A           65 EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS  144 (333)
T ss_dssp             TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT
T ss_pred             CCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC
Confidence            8888 898876543      34678999999999877777666    689999998765432211112345688999998


Q ss_pred             CCCcEEEEEcC------CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE-EEEecCCeEEEEEecCCCCCc
Q 020107          160 HQPHMVYTGSD------DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL-LTGSYDEYLRVWDVRSISKPV  232 (331)
Q Consensus       160 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~  232 (331)
                       +++++++...      .+.|..+|..+++... +..   +...+..++|+| +++.| ++...++.|.+||++.....+
T Consensus       145 -~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~---~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~  218 (333)
T 2dg1_A          145 -KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQ---NISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTI  218 (333)
T ss_dssp             -TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEE---EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSE
T ss_pred             -CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eec---CCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCc
Confidence             6777776553      3566666665544322 222   234578999999 88755 445567899999997422322


Q ss_pred             ee----eeeecC--CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc------ceeeeeecCCC
Q 020107          233 NE----TSVCLG--GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS------LAYGADWQRGR  297 (331)
Q Consensus       233 ~~----~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------~v~~~~~~~~~  297 (331)
                      ..    ......  ..+..+++++++ .++++...++++.+|+.   .++.+..+..+..      .+.+++|+|++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~---~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg  291 (333)
T 2dg1_A          219 QPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNK---RGYPIGQILIPGRDEGHMLRSTHPQFIPGT  291 (333)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECT---TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             ccccceEEEecCCCCCCCceEECCCC-CEEEEEcCCCEEEEECC---CCCEEEEEEcCCCccccccCcceEEECCCC
Confidence            21    011111  367889999996 55555555677666654   2556666654433      68899999986

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.75  E-value=1.4e-15  Score=138.43  Aligned_cols=242  Identities=8%  Similarity=-0.088  Sum_probs=158.0

Q ss_pred             ecCcEeEEEEcCCCCCCCCeEEEE-----cCCccE-EEecCCCccc-C---ccE--EEEEEcCCCCeEEEEecCCe----
Q 020107           65 DTAGIFDIKWSPVGGNAGPFLAQA-----DADGGL-LRDITGEKIS-S---SMC--LCLEWNPSATSITVGLSDGS----  128 (331)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~l~~~-----~~dg~i-iw~~~~~~~~-~---~~v--~~~~~~~~~~~l~~~~~dg~----  128 (331)
                      |...+..++|||+    +++||.+     +.+..+ +|++.+++.. .   ..+  ..++|+||++.|+.++.+..    
T Consensus       119 ~~~~~~~~~~SPD----G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          119 GTVSLGTWAVSWD----GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SCEEEEEEEECTT----SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             CCEEEEEEEECCC----CCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence            4446999999999    8888833     334556 9999887643 1   122  67899999999999988766    


Q ss_pred             ---------EEEEEcccccee--eeeeeecccceeEEEeeCCCCCcEEEEEcCCC----eEEEEEccCCCceeeeecccC
Q 020107          129 ---------VSIVSVVESQLE--VLQQWKAHEFELWATSFDVHQPHMVYTGSDDC----KFSGWDIRESPFKLAFQNSKI  193 (331)
Q Consensus       129 ---------i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~  193 (331)
                               |++|++.++...  .+.....+...+..+.|+| ++++|+..+.++    .|.++|..++. ...+..   
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~---  269 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVK---  269 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEE---
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeec---
Confidence                     999999886532  2333344556788999999 667776666555    67777665544 333433   


Q ss_pred             CCcceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCCC-ceeeeeec-CCceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107          194 HKMGVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISKP-VNETSVCL-GGGVWRIKHHPFIPGLVLAACMHNGFAVV  268 (331)
Q Consensus       194 ~~~~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  268 (331)
                      +...+....+ + ++.+++...   .++.|.+||+.++... ...+...+ ...+..++|+.+  .++++...++..++|
T Consensus       270 ~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~lv~~~~~dg~~~l~  345 (695)
T 2bkl_A          270 GVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGG--HLSLEYLKDATSEVR  345 (695)
T ss_dssp             CSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETT--EEEEEEEETTEEEEE
T ss_pred             CCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECC--EEEEEEEECCEEEEE
Confidence            4555566666 4 455444443   2578999999775321 23322223 456888888832  555555556666677


Q ss_pred             EEcCcccceeEEeecC-CcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCcc
Q 020107          269 KVGGEKAEVLETYAKH-GSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDC  328 (331)
Q Consensus       269 ~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~  328 (331)
                      .+... ++....+..+ .+.+..++++|++.        .++++.++  ..++|++||+.++.
T Consensus       346 ~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          346 VATLK-GKPVRTVQLPGVGAASNLMGLEDLD--------DAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEETT-CCEEEECCCSSSSEECCCBSCTTCS--------EEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEeCC-CCeeEEecCCCCeEEEEeecCCCCC--------EEEEEEcCCCCCCEEEEEECCCCc
Confidence            66533 4555566554 67788899999874        34433331  45789999998764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=7.4e-16  Score=130.48  Aligned_cols=243  Identities=10%  Similarity=-0.000  Sum_probs=153.0

Q ss_pred             eeecCcEeE-----EEEcCCCCCCCCeEEEEcC-Ccc--E-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCC
Q 020107           63 RMDTAGIFD-----IKWSPVGGNAGPFLAQADA-DGG--L-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDG  127 (331)
Q Consensus        63 ~~~~~~v~~-----~~~~~~~~~~~~~l~~~~~-dg~--i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg  127 (331)
                      ..|......     .+|+|+    ++.|+.++. +|.  + +|++.+++.      +...+..+.|+|+++.|+.++.++
T Consensus        27 t~~~~~~~~~~~~~~~~SpD----g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~  102 (388)
T 3pe7_A           27 TPPDVTCHRNYFYQKCFTRD----GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR  102 (388)
T ss_dssp             SCTTSCEECCCTTSCCBCTT----SCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred             cCCcccccchhhcCccCCCC----CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence            445444444     789999    888888877 674  4 778776543      223334678999999999999999


Q ss_pred             eEEEEEccccceeeeeeeecccceeEEEe--eCCCCCcEEEEE----------------------cCCCeEEEEEccCCC
Q 020107          128 SVSIVSVVESQLEVLQQWKAHEFELWATS--FDVHQPHMVYTG----------------------SDDCKFSGWDIRESP  183 (331)
Q Consensus       128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~----------------------~~dg~i~i~d~~~~~  183 (331)
                      .|++||+.+++...+.  ..+...+....  ++| ++..++..                      ..+..|.+||+.+++
T Consensus       103 ~l~~~d~~~g~~~~~~--~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          103 NLMRVDLATLEENVVY--QVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             EEEEEETTTCCEEEEE--ECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             eEEEEECCCCcceeee--echhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            9999999988654333  33344443333  477 66666532                      244789999999886


Q ss_pred             ceeeeecccCCCcceEEEEEecCCCCEEEEEecC------CeEEEEEecCCCCCceeeeeecC--CceEEEEECCCCCCe
Q 020107          184 FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD------EYLRVWDVRSISKPVNETSVCLG--GGVWRIKHHPFIPGL  255 (331)
Q Consensus       184 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~  255 (331)
                      .... ..   +...+..+.|+|.+++.|+....+      ..|.++|.... . ... +..+.  ..+...+|+|++..+
T Consensus       180 ~~~l-~~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~-l~~~~~~~~~~~~~~spdg~~l  252 (388)
T 3pe7_A          180 STVI-LQ---ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-N-MRK-VKTHAEGESCTHEFWVPDGSAL  252 (388)
T ss_dssp             EEEE-EE---ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-C-CEE-SCCCCTTEEEEEEEECTTSSCE
T ss_pred             eEEe-ec---CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-c-eEE-eeeCCCCcccccceECCCCCEE
Confidence            4433 33   566789999999556677666653      36777777653 2 222 12333  357889999998444


Q ss_pred             EEEEEecCc----EEEEEEcCcccceeEEeecCCcc---eeeeeecCCCCcccccccCcEEEEe---------ecCCCeE
Q 020107          256 VLAACMHNG----FAVVKVGGEKAEVLETYAKHGSL---AYGADWQRGRSSLEGKRKNSLVATC---------SFYDRLL  319 (331)
Q Consensus       256 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~~~~~~~~l~s~---------~~~d~~i  319 (331)
                      ++++...+.    +.+|++.....+.+..+.++...   .....|+|++         +.|+..         . .+..|
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg---------~~l~~~~~~~~~~~~~-~~~~i  322 (388)
T 3pe7_A          253 VYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG---------SDAPVDVQDDSGYKIE-NDPFL  322 (388)
T ss_dssp             EEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE---------CCC------------C-CCCEE
T ss_pred             EEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC---------CcceeEeeeccccccC-CCCEE
Confidence            444443332    55666554323344444432111   2234789998         455532         4 57799


Q ss_pred             EEEcCCCccc
Q 020107          320 RIWMPESDCL  329 (331)
Q Consensus       320 ~iW~~~~~~~  329 (331)
                      ++||++++..
T Consensus       323 ~~~d~~~~~~  332 (388)
T 3pe7_A          323 YVFNMKNGTQ  332 (388)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEeccCCce
Confidence            9999987643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=2.7e-16  Score=131.04  Aligned_cols=231  Identities=9%  Similarity=0.010  Sum_probs=144.3

Q ss_pred             EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----Cc--cEEEEEEcCCCCeEEE-EecCCeEEEEEccccceee
Q 020107           71 DIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SS--MCLCLEWNPSATSITV-GLSDGSVSIVSVVESQLEV  141 (331)
Q Consensus        71 ~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~--~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~  141 (331)
                      .++++++    +.++++++.++.+ +|++.+.+..     ..  .+..++|+|+++.+++ +..++.|.+||+.+++.  
T Consensus         4 g~~~~~~----~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~--   77 (349)
T 1jmx_B            4 GPALKAG----HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--   77 (349)
T ss_dssp             CCCCCTT----CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--
T ss_pred             cccccCC----CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE--
Confidence            3456777    7899999999999 9999876541     22  5778999999987654 45689999999988754  


Q ss_pred             eeeeec-c-----cceeEEEeeCCCCCcEEEEEcCC------------CeEEEEEccCCCceeeeecccCCCcceEEEEE
Q 020107          142 LQQWKA-H-----EFELWATSFDVHQPHMVYTGSDD------------CKFSGWDIRESPFKLAFQNSKIHKMGVCCIAS  203 (331)
Q Consensus       142 ~~~~~~-~-----~~~v~~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  203 (331)
                      +..+.. +     ...+..++|+| +++++++++.+            +.|.+||+.+++....+.... +...+.+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~  155 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRA  155 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEE
T ss_pred             EEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeE
Confidence            333332 2     23378899999 77788877755            899999998854333222211 3446889999


Q ss_pred             ecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC-C-----------------------ceEEEEECCCCCCeEEEE
Q 020107          204 IPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG-G-----------------------GVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       204 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~-----------------------~v~~~~~~~~~~~~~~~~  259 (331)
                      +| +++ +++++  +.|.+||+.++ +.... ..... .                       ....+++++++.......
T Consensus       156 s~-dg~-l~~~~--~~i~~~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  229 (349)
T 1jmx_B          156 AD-DGS-LYVAG--PDIYKMDVKTG-KYTVA-LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA  229 (349)
T ss_dssp             CT-TSC-EEEES--SSEEEECTTTC-CEEEE-ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred             CC-CCc-EEEcc--CcEEEEeCCCC-ceecc-ccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence            99 888 55554  34999999875 33332 11111 0                       334466665431111111


Q ss_pred             EecCcEEEEEEcCcccceeEEeecCCcceeeeeecC-CCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR-GRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      .....+..++.... .-....+..+...+.+++|+| ++         ++++++   ++.|.+||+.++.
T Consensus       230 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sp~dg---------~~l~~~---~~~v~~~d~~~~~  286 (349)
T 1jmx_B          230 DLLYGYLSVDLKTG-KTHTQEFADLTELYFTGLRSPKDP---------NQIYGV---LNRLAKYDLKQRK  286 (349)
T ss_dssp             EEEEEEEEEETTTC-CEEEEEEEECSSCEEEEEECSSCT---------TEEEEE---ESEEEEEETTTTE
T ss_pred             ccceeEEEEeccCC-cEEecccccCCCcceeeEecCCCC---------CEEEEE---cCeEEEEECccCe
Confidence            11111111222222 111222334566788999999 88         577665   6799999998764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=7.9e-15  Score=122.20  Aligned_cols=234  Identities=12%  Similarity=0.116  Sum_probs=155.0

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC---cc--E-EEecCCCcc-----cCccEEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD---GG--L-LRDITGEKI-----SSSMCLCL  111 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g~--i-iw~~~~~~~-----~~~~v~~~  111 (331)
                      ++.|.+|++.+++  ...+     ..+..++|+|+    ++.|+.++.+   +.  + +|++.+++.     ... +..+
T Consensus        42 ~~~l~~~d~~~~~--~~~l-----~~~~~~~~SpD----g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~  109 (347)
T 2gop_A           42 ENTIVIENLKNNA--RRFI-----ENATMPRISPD----GKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSL  109 (347)
T ss_dssp             EEEEEEEETTTCC--EEEE-----ESCEEEEECTT----SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEE
T ss_pred             cceEEEEeCCCCc--eEEc-----ccCCCeEECCC----CCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccce
Confidence            6689999998764  3333     46888999999    8888887654   33  3 677766543     133 8899


Q ss_pred             EEcCCCCeEEEEecC---------------------------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE
Q 020107          112 EWNPSATSITVGLSD---------------------------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM  164 (331)
Q Consensus       112 ~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (331)
                      +|+|+++.|+.++.+                           ..|.+||+.+++.  +..+.. . .+..++|+| ++ +
T Consensus       110 ~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~~~l~~-~-~~~~~~~sp-dg-~  183 (347)
T 2gop_A          110 EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV--IEEFEK-P-RFSSGIWHR-DK-I  183 (347)
T ss_dssp             EECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE--EEEEEE-E-TTCEEEEET-TE-E
T ss_pred             eECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--EeeecC-C-CcccccCCC-Ce-E
Confidence            999999998887642                           5789999987754  123333 3 688999999 66 7


Q ss_pred             EEEEcCCC-------eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC--------CeEEEEEecCCC
Q 020107          165 VYTGSDDC-------KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD--------EYLRVWDVRSIS  229 (331)
Q Consensus       165 l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~  229 (331)
                      ++++..+.       ...+|.+.+++ ...+..   + ..+..+  +| +++.|+..+.+        ..|.+||  ++ 
T Consensus       184 ~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~---~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~-  252 (347)
T 2gop_A          184 VVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFE---K-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GK-  252 (347)
T ss_dssp             EEEEECCCSSCCSSCCEEEEEEETTE-EEEEEE---E-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SS-
T ss_pred             EEEEecccccccccccccEEEeCCCc-eEEecc---C-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CC-
Confidence            77775542       34555554443 333333   3 445544  89 88888877754        3677777  32 


Q ss_pred             CCceeeeeecCCceEE-EEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcE
Q 020107          230 KPVNETSVCLGGGVWR-IKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSL  308 (331)
Q Consensus       230 ~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  308 (331)
                      + ...+...+...+.. +.|+ +  ++++++..++..++| +. . ++.. .+..+...|.+++|+| .          +
T Consensus       253 ~-~~~l~~~~~~~~~~~~~~s-d--g~~~~~~~~~~~~l~-~~-~-g~~~-~~~~~~~~v~~~~~s~-~----------~  313 (347)
T 2gop_A          253 E-VMGILDEVDRGVGQAKIKD-G--KVYFTLFEEGSVNLY-IW-D-GEIK-PIAKGRHWIMGFDVDE-I----------V  313 (347)
T ss_dssp             C-EEESSTTCCSEEEEEEEET-T--EEEEEEEETTEEEEE-EE-S-SSEE-EEECSSSEEEEEEESS-S----------E
T ss_pred             c-eEeccccCCcccCCccEEc-C--cEEEEEecCCcEEEE-Ec-C-CceE-EEecCCCeEEeeeeeC-c----------E
Confidence            2 22322455677886 9999 7  466666677778888 77 3 4443 3444578899999999 5          6


Q ss_pred             EEEeecCCCeE-EEEcCC
Q 020107          309 VATCSFYDRLL-RIWMPE  325 (331)
Q Consensus       309 l~s~~~~d~~i-~iW~~~  325 (331)
                      +++++ .++.. .+|.++
T Consensus       314 ~~~~~-~~~~~~~l~~~~  330 (347)
T 2gop_A          314 VYLKE-TATRLRELFTWD  330 (347)
T ss_dssp             EEEEE-CSSSCCEEEEES
T ss_pred             EEEEc-CCCChHHheEeC
Confidence            66666 55544 666654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.73  E-value=1.7e-15  Score=137.27  Aligned_cols=250  Identities=8%  Similarity=-0.026  Sum_probs=155.8

Q ss_pred             CCCcE-EEEEeecccCCCCCCCCCcEEEEecc--C-cccceEEeEee----ecCcEeEEEEcCCCCCCCCeEEEEcCC--
Q 020107           22 SYHHV-LAASTYTLQEGDKPSRNGSISLFNVN--A-EEKNLELLYRM----DTAGIFDIKWSPVGGNAGPFLAQADAD--   91 (331)
Q Consensus        22 ~~~~~-la~g~~~~~~~~~~~~~g~i~vw~~~--~-~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~l~~~~~d--   91 (331)
                      |+++. ||.+..         .+..|+++++.  + ..  ...+...    |...+..++|+|+    ++.|+.++.+  
T Consensus        88 PDg~~~la~~~~---------~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spD----g~~l~~~~~~~~  152 (662)
T 3azo_A           88 PAGGPLLVFTHF---------GDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPE----RGEVWCMAEEFT  152 (662)
T ss_dssp             SSSSCEEEEEBT---------TTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETT----TTEEEEEEEEEC
T ss_pred             cCCCeEEEEEEC---------CCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCC----CCEEEEEEeccc
Confidence            34477 777751         35667777765  2 32  3333221    5567899999999    8999988876  


Q ss_pred             --------ccE-EEecCC------Ccc------cCccEEEEEEcCCCCeEEEEecC--------CeEEEEEcc-ccceee
Q 020107           92 --------GGL-LRDITG------EKI------SSSMCLCLEWNPSATSITVGLSD--------GSVSIVSVV-ESQLEV  141 (331)
Q Consensus        92 --------g~i-iw~~~~------~~~------~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~~~~~  141 (331)
                              ..+ +|++.+      ...      +...+..++|+|||+.|+.++.+        ..|++||+. +++...
T Consensus       153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~  232 (662)
T 3azo_A          153 GEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD  232 (662)
T ss_dssp             SSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred             CCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence                    345 898877      332      23456778999999999888754        379999998 452212


Q ss_pred             eee-eecccceeEEEeeCCCCCcEEEEEcCCC--eEEEEEccCCCceeeeecccCCCcc--------eEEEEEecCCCCE
Q 020107          142 LQQ-WKAHEFELWATSFDVHQPHMVYTGSDDC--KFSGWDIRESPFKLAFQNSKIHKMG--------VCCIASIPSDSNT  210 (331)
Q Consensus       142 ~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~  210 (331)
                      ... ...+...+..++|+| ++++++++..++  .|.+||+.+++.......   +...        +..++|+| ++.+
T Consensus       233 ~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~---~~~~~~p~w~~~~~~~~~~~-~~~~  307 (662)
T 3azo_A          233 TRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLCRR---EEEFAGPLWTPGMRWFAPLA-NGLI  307 (662)
T ss_dssp             EEEEEEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCEEESSCC---SSBSSCCCCSTTCCSEEECT-TSCE
T ss_pred             cEEeCCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCceeecccc---cccccCccccccCceEeEeC-CCEE
Confidence            233 334567899999999 666888888888  666667656653333222   2221        56788999 8899


Q ss_pred             EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEE-EECCCCCCeEEEEEecC-cEEEEEEcCcccceeEEeecCCcce
Q 020107          211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRI-KHHPFIPGLVLAACMHN-GFAVVKVGGEKAEVLETYAKHGSLA  288 (331)
Q Consensus       211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v  288 (331)
                      ++++.. +.++||.+......+.. +..+...+..+ .++  ++.+++++++.+ ...+|.+....++.......+...+
T Consensus       308 ~~~~~~-~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~  383 (662)
T 3azo_A          308 AVVHGK-GAAVLGILDPESGELVD-AAGPWTEWAATLTVS--GTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPV  383 (662)
T ss_dssp             EEEEBS-SSCEEEEEETTTTEEEE-CCSSCCEEEEEEEEE--TTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSS
T ss_pred             EEEEEc-CccEEEEEECCCCcEEE-ecCCCCeEEEEEecC--CCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccC
Confidence            999988 99999955432222333 34566677766 544  436666665544 3346655433233333223443333


Q ss_pred             eeeeecC
Q 020107          289 YGADWQR  295 (331)
Q Consensus       289 ~~~~~~~  295 (331)
                      ....+.+
T Consensus       384 ~~~~~~~  390 (662)
T 3azo_A          384 DPAYYPE  390 (662)
T ss_dssp             CGGGSCC
T ss_pred             CccccCc
Confidence            3344443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=2.4e-14  Score=115.99  Aligned_cols=231  Identities=8%  Similarity=0.019  Sum_probs=157.6

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe-----eecCcEeEEEEc-CCCCCCCCe
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR-----MDTAGIFDIKWS-PVGGNAGPF   84 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~-----~~~~~v~~~~~~-~~~~~~~~~   84 (331)
                      .+.+|++.|.+   +++++..          .++.|++|+.+..  .+..+..     .+...+..+++. ++    +.+
T Consensus        31 ~p~~v~~~~~g---~l~v~~~----------~~~~i~~~d~~g~--~~~~~~~~~~~~~~~~~p~~i~~~~~~----g~l   91 (286)
T 1q7f_A           31 EPSGVAVNAQN---DIIVADT----------NNHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNS----GDI   91 (286)
T ss_dssp             CEEEEEECTTC---CEEEEEG----------GGTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTT----TEE
T ss_pred             CCceEEECCCC---CEEEEEC----------CCCEEEEECCCCc--EEEEecccCCCcccccCceEEEEEcCC----CeE
Confidence            35667776655   7777765          5889999998743  2333211     233568899994 55    666


Q ss_pred             EEEEcC-CccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee--cccceeEE
Q 020107           85 LAQADA-DGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK--AHEFELWA  154 (331)
Q Consensus        85 l~~~~~-dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~v~~  154 (331)
                      +++... ++.+ +|+......      +...+.+++++++++.+++...++.|.+||... +.  +..+.  .+...+..
T Consensus        92 ~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~--~~~~~~~~~~~~p~~  168 (286)
T 1q7f_A           92 IVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV--LHKFGCSKHLEFPNG  168 (286)
T ss_dssp             EEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE--EEEEECTTTCSSEEE
T ss_pred             EEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CE--EEEeCCCCccCCcEE
Confidence            666643 6667 887443221      234678999999998777777789999999753 32  33332  34456889


Q ss_pred             EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC-eEEEEEecCCCCCce
Q 020107          155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-YLRVWDVRSISKPVN  233 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~  233 (331)
                      ++++| +++++++...++.|++||.. ++....+.. .++...+..++++| +++++++...++ .|.+||...  +.+.
T Consensus       169 i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g--~~~~  242 (286)
T 1q7f_A          169 VVVND-KQEIFISDNRAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDG--QLIS  242 (286)
T ss_dssp             EEECS-SSEEEEEEGGGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTS--CEEE
T ss_pred             EEECC-CCCEEEEECCCCEEEEEcCC-CCEEEEEcc-CCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCC--CEEE
Confidence            99998 77888888889999999975 443444433 22336789999999 888888887776 999999643  3333


Q ss_pred             eeeeecC--CceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          234 ETSVCLG--GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       234 ~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      . ...+.  ..+..++++|++  .+++++.++.+.+|++..
T Consensus       243 ~-~~~~~~~~~~~~i~~~~~g--~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          243 A-LESKVKHAQCFDVALMDDG--SVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             E-EEESSCCSCEEEEEEETTT--EEEEEETTTEEEEEECSC
T ss_pred             E-EcccCCCCcceeEEECCCC--cEEEECCCCeEEEEEccc
Confidence            3 22332  247899999985  455556778888888754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=5.7e-14  Score=114.38  Aligned_cols=237  Identities=8%  Similarity=-0.071  Sum_probs=160.9

Q ss_pred             eecCcEeEEEEcCCCCCCCC-eEEEEcCCccE-EEecCCCc----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107           64 MDTAGIFDIKWSPVGGNAGP-FLAQADADGGL-LRDITGEK----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES  137 (331)
Q Consensus        64 ~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i-iw~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  137 (331)
                      .+.....+++|+|+    ++ +++++..++.+ .|+..+..    .+...+.+++++++++++++...++.|.+||..++
T Consensus        25 ~~~~~~eg~~~d~~----g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g  100 (296)
T 3e5z_A           25 DGFTWTEGPVYVPA----RSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG  100 (296)
T ss_dssp             CCCSSEEEEEEEGG----GTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred             cCCccccCCeEeCC----CCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence            34556789999999    77 78888888888 88887651    13456889999999998777777899999999777


Q ss_pred             ceeeeeeee-c-ccceeEEEeeCCCCCcEEEE----Ec-------------CCCeEEEEEccCCCceeeeecccCCCcce
Q 020107          138 QLEVLQQWK-A-HEFELWATSFDVHQPHMVYT----GS-------------DDCKFSGWDIRESPFKLAFQNSKIHKMGV  198 (331)
Q Consensus       138 ~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  198 (331)
                      +...+.... . ....+..++++| +++++++    ++             ..+.|..+|.. ++ ...+..   +....
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~---~~~~~  174 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIR---DRVKP  174 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEEC---CCSSE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeec---CCCCC
Confidence            653332111 1 122466899998 7787776    33             13456556554 33 333333   56678


Q ss_pred             EEEEEecCCCCEEEEEecCCeEEEEEecCCCCC-c-eeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc
Q 020107          199 CCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP-V-NETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE  276 (331)
Q Consensus       199 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (331)
                      ..++|+| +++.+++.+.++.|.+||+...... . ...+..+.+.+..+++++++ .++++.  .+++.+|+..   ++
T Consensus       175 ~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~---g~  247 (296)
T 3e5z_A          175 NGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD---GD  247 (296)
T ss_dssp             EEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT---SC
T ss_pred             ccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC---CC
Confidence            9999999 8888877778899999999732222 0 11112345567789999996 444444  6776666542   67


Q ss_pred             eeEEeecCCcceeeeee-cCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          277 VLETYAKHGSLAYGADW-QRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       277 ~~~~~~~h~~~v~~~~~-~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      .+..+..+.. +++++| .|++         +.|+.++ .+ .|.-+++++..+
T Consensus       248 ~~~~~~~~~~-~~~~~f~~~d~---------~~L~v~t-~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          248 ELGRVLTPQT-TSNLCFGGPEG---------RTLYMTV-ST-EFWSIETNVRGL  289 (296)
T ss_dssp             EEEEEECSSC-CCEEEEESTTS---------CEEEEEE-TT-EEEEEECSCCBC
T ss_pred             EEEEEECCCC-ceeEEEECCCC---------CEEEEEc-CC-eEEEEEcccccc
Confidence            7777877777 999999 4776         5777776 44 555556665543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=9.2e-13  Score=107.11  Aligned_cols=271  Identities=10%  Similarity=0.046  Sum_probs=179.1

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-eeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-RMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      .+.++.+.+.+   +++++..          .++.|.+|+.. ..  +.... ..+...+.++++.++    +.++++..
T Consensus        16 ~~~~i~~d~~g---~l~v~~~----------~~~~v~~~d~~-~~--~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~   75 (299)
T 2z2n_A           16 GPYGITVSDKG---KVWITQH----------KANMISCINLD-GK--ITEYPLPTPDAKVMCLTISSD----GEVWFTEN   75 (299)
T ss_dssp             CEEEEEECTTS---CEEEEET----------TTTEEEEECTT-CC--EEEEECSSTTCCEEEEEECTT----SCEEEEET
T ss_pred             CccceEECCCC---CEEEEec----------CCCcEEEEcCC-CC--eEEecCCcccCceeeEEECCC----CCEEEeCC
Confidence            45667666654   6666553          47889999988 43  33332 223466999999998    88888877


Q ss_pred             CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      .++.+ .|+......      ....+.++++.+++...++...++.|..||. +++.... ........+..+++.+ ++
T Consensus        76 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~-~~~~~~~~~~~i~~~~-~g  152 (299)
T 2z2n_A           76 AANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY-ELPNKGSYPSFITLGS-DN  152 (299)
T ss_dssp             TTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECT-TS
T ss_pred             CCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe-cCCCCCCCCceEEEcC-CC
Confidence            77777 777652210      2346789999999987777777889999998 5543221 2222345688999998 67


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee-eeecCC
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET-SVCLGG  241 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~  241 (331)
                      .++++...++.|..||. +++.. .+.. ......+..+++++ ++.++++...++.|..||. ++ . +... ......
T Consensus       153 ~l~v~~~~~~~i~~~~~-~g~~~-~~~~-~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g-~-~~~~~~~~~~~  225 (299)
T 2z2n_A          153 ALWFTENQNNAIGRITE-SGDIT-EFKI-PTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SG-E-ITEFKIPTPNA  225 (299)
T ss_dssp             CEEEEETTTTEEEEECT-TCCEE-EEEC-SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TC-C-EEEEECSSTTC
T ss_pred             CEEEEeCCCCEEEEEcC-CCcEE-EeeC-CCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CC-c-EEEEECCCCCC
Confidence            77777777889999998 55533 2322 22455688999999 7887777667889999998 53 2 2221 122446


Q ss_pred             ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe--ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107          242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY--AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL  319 (331)
Q Consensus       242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i  319 (331)
                      .+..+++.+++ .++++....+++..++..   ++ +..+  ..+...+.++++ +++         .+.++..  .+.|
T Consensus       226 ~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~---g~-~~~~~~~~~~~~~~~i~~-~~g---------~l~v~~~--~~~l  288 (299)
T 2z2n_A          226 RPHAITAGAGI-DLWFTEWGANKIGRLTSN---NI-IEEYPIQIKSAEPHGICF-DGE---------TIWFAME--CDKI  288 (299)
T ss_dssp             CEEEEEECSTT-CEEEEETTTTEEEEEETT---TE-EEEEECSSSSCCEEEEEE-CSS---------CEEEEET--TTEE
T ss_pred             CceeEEECCCC-CEEEeccCCceEEEECCC---Cc-eEEEeCCCCCCccceEEe-cCC---------CEEEEec--CCcE
Confidence            78999999986 455444456777777652   33 2233  344567889999 776         4555544  5677


Q ss_pred             EEEcCCCcc
Q 020107          320 RIWMPESDC  328 (331)
Q Consensus       320 ~iW~~~~~~  328 (331)
                      ..++++++.
T Consensus       289 ~~~~~~~~~  297 (299)
T 2z2n_A          289 GKLTLIKDN  297 (299)
T ss_dssp             EEEEEC---
T ss_pred             EEEEcCccc
Confidence            777777654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.66  E-value=1e-13  Score=127.18  Aligned_cols=242  Identities=11%  Similarity=-0.043  Sum_probs=154.7

Q ss_pred             ecCcEeEEEEcCCCCCCCCeEEEEcCC-c----cE-EEecCCCcccCcc-----EEEEEEcCCCCeEEEEecCCe-----
Q 020107           65 DTAGIFDIKWSPVGGNAGPFLAQADAD-G----GL-LRDITGEKISSSM-----CLCLEWNPSATSITVGLSDGS-----  128 (331)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~l~~~~~d-g----~i-iw~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~dg~-----  128 (331)
                      |...+..++|||+    +++|+.+..+ |    .+ +|++.+++.....     +..++|+|| +.|+.+..++.     
T Consensus       161 ~~~~~~~~~~SPD----G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          161 GATALDAWAASDD----GRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             --EEEEEEEECTT----SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             CCEEEEeEEECCC----CCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence            3346889999999    8888876544 3    35 9999887653221     246889999 98888876554     


Q ss_pred             ---------EEEEEccccceeeeeeee--cccceeEEEeeCCCCCcEEEEEcCC-----CeEEEEEccCC--Cceeeeec
Q 020107          129 ---------VSIVSVVESQLEVLQQWK--AHEFELWATSFDVHQPHMVYTGSDD-----CKFSGWDIRES--PFKLAFQN  190 (331)
Q Consensus       129 ---------i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~--~~~~~~~~  190 (331)
                               |++|++.++.......+.  .+...+..+.|+| ++++|+..+.+     ..|++||+.++  +....+..
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~  314 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP  314 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence                     889998776432222232  2333578999999 77777666543     38999999876  31233333


Q ss_pred             ccCCCcceEEEEEecCCCCEEEEEecC----CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107          191 SKIHKMGVCCIASIPSDSNTLLTGSYD----EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFA  266 (331)
Q Consensus       191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  266 (331)
                         +...+.... .| ++..|+..+.+    +.|.+||+.+.......+...+...+..+.|..+  .++++...++..+
T Consensus       315 ---~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~--~lv~~~~~dg~~~  387 (741)
T 1yr2_A          315 ---DLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGN--RLFASYIHDAKSQ  387 (741)
T ss_dssp             ---SSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBT--EEEEEEEETTEEE
T ss_pred             ---CCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECC--EEEEEEEECCEEE
Confidence               344444443 47 77777777653    4599999876421223323344455677888732  5555555566666


Q ss_pred             EEEEcCcccceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCcc
Q 020107          267 VVKVGGEKAEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDC  328 (331)
Q Consensus       267 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~  328 (331)
                      +|.+... +.....+.. +.+.+..+.++|++.        .++++.++  ..++|++||+.++.
T Consensus       388 l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          388 VLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDR--------HAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEETT-SCEEEECBCSSSCEEEEEECCBTCS--------CEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEeCC-CCceeeccCCCCeEEEEeecCCCCC--------EEEEEEcCCCCCCEEEEEECCCCc
Confidence            6666533 455555654 367788999999874        34443331  45899999998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=5.4e-14  Score=116.24  Aligned_cols=253  Identities=8%  Similarity=-0.061  Sum_probs=166.5

Q ss_pred             CCCcEEEEeccCcccceEEeEe-----eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYR-----MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLC  110 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~  110 (331)
                      .++.|.++|.++.+ ....+..     ........+.+..     ++++++...++.+ ++|..+.+.     .......
T Consensus        15 ~~~~l~~~d~~t~~-~~~~i~~~~n~~~lg~~~~~i~~~~-----~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~   88 (328)
T 3dsm_A           15 SNATLSYYDPATCE-VENEVFYRANGFKLGDVAQSMVIRD-----GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRY   88 (328)
T ss_dssp             CCBEEEEEETTTTE-EECSHHHHHHSSCCBSCEEEEEEET-----TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEE
T ss_pred             CCceEEEEECCCCE-EhhhhHhhhcCcccCccceEEEEEC-----CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcE
Confidence            48999999998875 1111111     1113367777743     4466666667888 899887665     2356788


Q ss_pred             EEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeeccc-----ceeEEEeeCCCCCcEEEEEc-CCCeEEEEEccCCC
Q 020107          111 LEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHE-----FELWATSFDVHQPHMVYTGS-DDCKFSGWDIRESP  183 (331)
Q Consensus       111 ~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  183 (331)
                      +++++++ .++++. .++.|.+||+.+++.  ...+....     .....+++ . ++.++++.. .++.|.++|+.+++
T Consensus        89 i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~--~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~  163 (328)
T 3dsm_A           89 IHFLSDE-KAYVTQIWDYRIFIINPKTYEI--TGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDK  163 (328)
T ss_dssp             EEEEETT-EEEEEEBSCSEEEEEETTTTEE--EEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTE
T ss_pred             EEEeCCC-eEEEEECCCCeEEEEECCCCeE--EEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCe
Confidence            9998888 555555 789999999998764  33343222     14456666 2 555555554 48999999999987


Q ss_pred             ceeeeecccCCCcceEEEEEecCCCCEEEEEecC----------CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC
Q 020107          184 FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD----------EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP  253 (331)
Q Consensus       184 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  253 (331)
                      ....+..    ......+.++| ++++++++..+          +.|.++|..+. +....+..........++++|++ 
T Consensus       164 ~~~~i~~----g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~~la~~~d~-  236 (328)
T 3dsm_A          164 VVDELTI----GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPSEVQLNGTR-  236 (328)
T ss_dssp             EEEEEEC----SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTCCCEEEEECTTS-
T ss_pred             EEEEEEc----CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCCCceeEEEecCC-
Confidence            6666654    33456788999 88877776654          78999999874 33333222223478999999987 


Q ss_pred             CeEEEEEecCcEEEEEEcCccccee--EEeecCCcceeeeeecCCCCcccccccCcEEEEe----ecCCCeEEEEcCC
Q 020107          254 GLVLAACMHNGFAVVKVGGEKAEVL--ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATC----SFYDRLLRIWMPE  325 (331)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~----~~~d~~i~iW~~~  325 (331)
                      ..++++..  .+.+++...  ++..  ..+........+++++|++.        .++++.    . .++.|.+||.+
T Consensus       237 ~~lyv~~~--~v~~~d~~t--~~~~~~~~~~~~~~~p~gi~vdp~~g--------~lyva~~~~y~-~~~~V~v~d~~  301 (328)
T 3dsm_A          237 DTLYWINN--DIWRMPVEA--DRVPVRPFLEFRDTKYYGLTVNPNNG--------EVYVADAIDYQ-QQGIVYRYSPQ  301 (328)
T ss_dssp             CEEEEESS--SEEEEETTC--SSCCSSCSBCCCSSCEEEEEECTTTC--------CEEEEECTTSS-SEEEEEEECTT
T ss_pred             CEEEEEcc--EEEEEECCC--CceeeeeeecCCCCceEEEEEcCCCC--------eEEEEcccccc-cCCEEEEECCC
Confidence            45555433  655666543  2322  11122245688999999553        677776    6 78999999998

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=5.2e-14  Score=116.60  Aligned_cols=236  Identities=6%  Similarity=-0.069  Sum_probs=155.6

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC---cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE---KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL  142 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  142 (331)
                      ..|.++.|+|+    ...++....++.+ .|.-...   ..+...+.+++|++++++++++..++.|.+||..+++...+
T Consensus         6 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~   81 (333)
T 2dg1_A            6 QDLPTLFYSGK----SNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP   81 (333)
T ss_dssp             CCCCBCCSCGG----GGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred             cccceeeecCC----ccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence            34677788887    5566665666666 5521111   11234568999999999777888899999999987764222


Q ss_pred             eeeecccceeEEEeeCCCCCcEEEEEcCC----CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec--
Q 020107          143 QQWKAHEFELWATSFDVHQPHMVYTGSDD----CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY--  216 (331)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--  216 (331)
                        ...+...+.+++++| +++++++...+    +.|.+||..++.....+.. ..+...+..+.++| +++++++...  
T Consensus        82 --~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~-~g~l~v~~~~~~  156 (333)
T 2dg1_A           82 --FVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDS-KGGFYFTDFRGY  156 (333)
T ss_dssp             --EECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECT-TSCEEEEECCCB
T ss_pred             --eeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-CccCCcccceEECC-CCCEEEEecccc
Confidence              223556799999998 67777777666    6899999987764433321 12456789999999 8887776653  


Q ss_pred             ----CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE--------EeecC
Q 020107          217 ----DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE--------TYAKH  284 (331)
Q Consensus       217 ----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~h  284 (331)
                          .+.|..+|....  .+.. .......+..++|+|++..++++...++.+.+|++... +..+.        .+.++
T Consensus       157 ~~~~~~~l~~~~~~~~--~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~-g~~~~~~~~~~~~~~~~~  232 (333)
T 2dg1_A          157 STNPLGGVYYVSPDFR--TVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD-GVTIQPFGATIPYYFTGH  232 (333)
T ss_dssp             TTBCCEEEEEECTTSC--CEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-SSSEEEEEEEEEEECCSS
T ss_pred             ccCCCceEEEEeCCCC--EEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC-CcCcccccceEEEecCCC
Confidence                244555554432  2222 12334457899999997334445445678888888542 22111        12222


Q ss_pred             CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                       ..+..+++++++         +++++.. .++.|.+|+.+.
T Consensus       233 -~~~~~i~~d~~G---------~l~v~~~-~~~~v~~~d~~g  263 (333)
T 2dg1_A          233 -EGPDSCCIDSDD---------NLYVAMY-GQGRVLVFNKRG  263 (333)
T ss_dssp             -SEEEEEEEBTTC---------CEEEEEE-TTTEEEEECTTS
T ss_pred             -CCCCceEECCCC---------CEEEEEc-CCCEEEEECCCC
Confidence             467889999998         6777776 689999999854

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=1.9e-12  Score=114.03  Aligned_cols=262  Identities=14%  Similarity=0.044  Sum_probs=177.0

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecC--CCcc-----cCccEEEEEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDIT--GEKI-----SSSMCLCLEW  113 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~--~~~~-----~~~~v~~~~~  113 (331)
                      .++.|.++|..+.+ .+..+.  ....+..+.|+|+    ++++++++.++.+ ++|+.  +.+.     .......++|
T Consensus       175 ~~~~V~viD~~t~~-v~~~i~--~g~~p~~v~~SpD----Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~  247 (567)
T 1qks_A          175 DAGQIALIDGSTYE-IKTVLD--TGYAVHISRLSAS----GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  247 (567)
T ss_dssp             TTTEEEEEETTTCC-EEEEEE--CSSCEEEEEECTT----SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             CCCeEEEEECCCCe-EEEEEe--CCCCccceEECCC----CCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence            68999999998875 343332  2335779999999    9999999999999 99985  4433     1234578999


Q ss_pred             c----CCCCeEEEEec-CCeEEEEEccccceeeeeeeec----------c-cceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107          114 N----PSATSITVGLS-DGSVSIVSVVESQLEVLQQWKA----------H-EFELWATSFDVHQPHMVYTGSDDCKFSGW  177 (331)
Q Consensus       114 ~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~----------~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (331)
                      +    |+|++++++.. +++|.++|..+.+.  +..+..          | ...+..+..++..+.+++....+|.|.++
T Consensus       248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~--~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v  325 (567)
T 1qks_A          248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEP--KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  325 (567)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCE--EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             ccccCCCCCEEEEEEccCCeEEEEECCCCcE--EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence            9    69999888876 69999999887654  444331          1 12577888887666777777888999999


Q ss_pred             EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeee----ecCCceEEEEECCCC
Q 020107          178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSV----CLGGGVWRIKHHPFI  252 (331)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~  252 (331)
                      |....+....... . .......+.|+| ++++++++. .++.|.++|+.+. +.......    +|.+.-..+ ++|++
T Consensus       326 d~~~~~~~~v~~i-~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~~-~~p~~  400 (567)
T 1qks_A          326 DYTDLNNLKTTEI-S-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANF-VHPTF  400 (567)
T ss_dssp             ETTCSSEEEEEEE-E-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEEE-EETTT
T ss_pred             ecCCCccceeeee-e-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCccceee-ECCCC
Confidence            9987653332222 1 344577889999 888876655 6789999999985 33333212    233222222 57875


Q ss_pred             CCeEEEEE--ecCcEEEEEEcCcc-----cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec--C----CCeE
Q 020107          253 PGLVLAAC--MHNGFAVVKVGGEK-----AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF--Y----DRLL  319 (331)
Q Consensus       253 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~----d~~i  319 (331)
                       +.+.+++  .++.+.+++.....     .+.++++......-..+..+|++.         ++.....  -    ..+|
T Consensus       401 -g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~---------~l~v~~~~~~~~~~~~~v  470 (567)
T 1qks_A          401 -GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQ---------YLYVDATLNPEAEISGSV  470 (567)
T ss_dssp             -EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCS---------EEEEECTTCSSHHHHTCE
T ss_pred             -CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCC---------eEEEecCCCCCcccCceE
Confidence             3444443  45778888876522     467777775544435577899984         4444320  1    3599


Q ss_pred             EEEcCCCc
Q 020107          320 RIWMPESD  327 (331)
Q Consensus       320 ~iW~~~~~  327 (331)
                      .++|+++.
T Consensus       471 ~v~d~~~~  478 (567)
T 1qks_A          471 AVFDIKAM  478 (567)
T ss_dssp             EEEEGGGC
T ss_pred             EEEECCcc
Confidence            99998865

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=1.2e-13  Score=110.82  Aligned_cols=233  Identities=7%  Similarity=-0.061  Sum_probs=157.1

Q ss_pred             cEeEEEEcCCCCCCCCeEE-EEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce
Q 020107           68 GIFDIKWSPVGGNAGPFLA-QADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL  139 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~-~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  139 (331)
                      ...++++.++    +.+++ +...++.+ .|+..+...      ....+.+++++++++.+++.. ++.|.+||......
T Consensus        25 ~p~~i~~~~~----g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSA----GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTT----CCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECCC----CCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE
Confidence            6788999998    77666 44667777 777654322      124567899999988555555 88999999876543


Q ss_pred             eeeeeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC
Q 020107          140 EVLQQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE  218 (331)
Q Consensus       140 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  218 (331)
                         ..+. .....+..++++| +++++++...++.|.+|+..+.........   ....+..++++| +++++++...++
T Consensus       100 ---~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---~~~~p~~i~~~~-~g~l~v~~~~~~  171 (270)
T 1rwi_B          100 ---TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFT---GLNDPDGVAVDN-SGNVYVTDTDNN  171 (270)
T ss_dssp             ---EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCC---SCCSCCCEEECT-TCCEEEEEGGGT
T ss_pred             ---eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccc---cCCCceeEEEeC-CCCEEEEECCCC
Confidence               2222 2235688999998 777887777789999997665432221111   334678899999 888777777788


Q ss_pred             eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-cCCcceeeeeecCCC
Q 020107          219 YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-KHGSLAYGADWQRGR  297 (331)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~  297 (331)
                      .|.+||..... .... .......+..+++++++ .++++...++.+..|+...   ....... .+...+.++++++++
T Consensus       172 ~i~~~~~~~~~-~~~~-~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~---~~~~~~~~~~~~~p~~i~~~~~g  245 (270)
T 1rwi_B          172 RVVKLEAESNN-QVVL-PFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGS---TTSTVLPFTGLNTPLAVAVDSDR  245 (270)
T ss_dssp             EEEEECTTTCC-EEEC-CCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTC---SCCEECCCCSCSCEEEEEECTTC
T ss_pred             EEEEEecCCCc-eEee-cccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCC---CcceeeccCCCCCceeEEECCCC
Confidence            99999987642 2111 12233668899999986 5555555567766665533   2222222 334578899999998


Q ss_pred             CcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          298 SSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       298 ~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                               +++++.. .++.|+++++.....
T Consensus       246 ---------~l~v~~~-~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          246 ---------TVYVADR-GNDRVVKLTSLEHHH  267 (270)
T ss_dssp             ---------CEEEEEG-GGTEEEEECCCGGGS
T ss_pred             ---------CEEEEEC-CCCEEEEEcCCCccc
Confidence                     6778877 899999999876543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.65  E-value=1.9e-13  Score=111.26  Aligned_cols=223  Identities=8%  Similarity=-0.002  Sum_probs=152.6

Q ss_pred             cceeEeeecCCCCCc-EEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           11 NADAVEFCPQDSYHH-VLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~-~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      .+.++.|.|.+   + +++++.          .++.|..|+..+.   ...+ ..+...+.+++++|+    +.++++..
T Consensus        29 ~~eg~~~d~~g---~~l~~~~~----------~~~~i~~~~~~~~---~~~~-~~~~~~~~~l~~~~d----g~l~v~~~   87 (296)
T 3e5z_A           29 WTEGPVYVPAR---SAVIFSDV----------RQNRTWAWSDDGQ---LSPE-MHPSHHQNGHCLNKQ----GHLIACSH   87 (296)
T ss_dssp             SEEEEEEEGGG---TEEEEEEG----------GGTEEEEEETTSC---EEEE-ESSCSSEEEEEECTT----CCEEEEET
T ss_pred             cccCCeEeCCC---CEEEEEeC----------CCCEEEEEECCCC---eEEE-ECCCCCcceeeECCC----CcEEEEec
Confidence            45678888876   6 777776          6889999998875   2222 446677999999999    88888877


Q ss_pred             CCccE-EEecCCCccc----------CccEEEEEEcCCCCeEEE----Ee-------------cCCeEEEEEccccceee
Q 020107           90 ADGGL-LRDITGEKIS----------SSMCLCLEWNPSATSITV----GL-------------SDGSVSIVSVVESQLEV  141 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~~----------~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~  141 (331)
                      .++.+ +|+..+++..          ...+..++++|+|+++++    |+             ..+.|..++.. ++.  
T Consensus        88 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~--  164 (296)
T 3e5z_A           88 GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL--  164 (296)
T ss_dssp             TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE--
T ss_pred             CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE--
Confidence            77777 8888655431          123567999999998776    33             13456666655 432  


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc-CCCc---eeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR-ESPF---KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD  217 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  217 (331)
                       ..+..+......++|+| +++.+++.+.++.|.+||+. .++.   ...+.   .+...+..+++++ +++++++.  +
T Consensus       165 -~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~---~~~~~p~~i~~d~-~G~l~v~~--~  236 (296)
T 3e5z_A          165 -SAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFT---VEPGKTDGLRVDA-GGLIWASA--G  236 (296)
T ss_dssp             -EEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC---CSSSCCCSEEEBT-TSCEEEEE--T
T ss_pred             -EEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee---CCCCCCCeEEECC-CCCEEEEc--C
Confidence             33344555678999999 66777888888999999997 4443   22331   2456677899999 88866666  7


Q ss_pred             CeEEEEEecCCCCCceeeeeecCCceEEEEE-CCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKH-HPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      +.|.+||...  +.+.. ...+.. +.+++| .|++ +.+.+++ .++  +|.+...
T Consensus       237 ~~v~~~~~~g--~~~~~-~~~~~~-~~~~~f~~~d~-~~L~v~t-~~~--l~~~~~~  285 (296)
T 3e5z_A          237 DGVHVLTPDG--DELGR-VLTPQT-TSNLCFGGPEG-RTLYMTV-STE--FWSIETN  285 (296)
T ss_dssp             TEEEEECTTS--CEEEE-EECSSC-CCEEEEESTTS-CEEEEEE-TTE--EEEEECS
T ss_pred             CeEEEECCCC--CEEEE-EECCCC-ceeEEEECCCC-CEEEEEc-CCe--EEEEEcc
Confidence            8999999863  33333 344455 899999 5775 4455544 456  6666544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.65  E-value=2.3e-13  Score=113.96  Aligned_cols=267  Identities=10%  Similarity=0.039  Sum_probs=165.4

Q ss_pred             eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-----ecCcEeEEEEcCCCCCCCCeEEEE
Q 020107           14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-----DTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus        14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .++++|++   ++|.++.........+..++.|.+||..+.+ ....+...     +......++++|+    +++|+++
T Consensus        54 ~i~~spdg---~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-~~~~i~~~~~~~~~g~~p~~i~~spd----g~~l~v~  125 (361)
T 2oiz_A           54 HVQVSNDG---KKIYTMTTYHERITRGKRSDVVEVWDADKLT-FEKEISLPPKRVQGLNYDGLFRQTTD----GKFIVLQ  125 (361)
T ss_dssp             EEEECTTS---SEEEEEEEEETTSSSSCEEEEEEEEETTTCC-EEEEEEECTTBCCBCCCGGGEEECTT----SSEEEEE
T ss_pred             ceEECCCC---CEEEEEEecccccccCCCCCEEEEEECcCCc-EEEEEEcCccccccCCCcceEEECCC----CCEEEEE
Confidence            77888776   7777765210000000125679999988765 33333221     1234678999999    8999988


Q ss_pred             cC--CccE-EEecCCCcccCc-----cEEEEEEcCCC-CeEEEEecCCeEEEEEccc-cceeee----eeeecccceeEE
Q 020107           89 DA--DGGL-LRDITGEKISSS-----MCLCLEWNPSA-TSITVGLSDGSVSIVSVVE-SQLEVL----QQWKAHEFELWA  154 (331)
Q Consensus        89 ~~--dg~i-iw~~~~~~~~~~-----~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~~~~~~----~~~~~~~~~v~~  154 (331)
                      +.  ++.+ +|++.+.+....     ....+.+.|++ ..+++.+.||.+.+|+... ++....    ..+.....++ .
T Consensus       126 n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~  204 (361)
T 2oiz_A          126 NASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-F  204 (361)
T ss_dssp             EESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-C
T ss_pred             CCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-E
Confidence            74  5677 999987654211     22235567766 5678888899999999865 432111    1112222222 2


Q ss_pred             EeeCCCCCcEEEEEcCCCeEEEEEccCCCce--eeeeccc---CC----CcceEEEEEecCCCCEEEEEec---------
Q 020107          155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFK--LAFQNSK---IH----KMGVCCIASIPSDSNTLLTGSY---------  216 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~---~~----~~~v~~~~~~~~~~~~l~~~~~---------  216 (331)
                      +.++| ++..++..+.++.+.++|+......  ..+....   .+    ......++++| ++..+++...         
T Consensus       205 ~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~  282 (361)
T 2oiz_A          205 IAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHK  282 (361)
T ss_dssp             SCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTT
T ss_pred             EEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCccccc
Confidence            33345 4455666677899999999755422  1111100   00    11122368899 7677666543         


Q ss_pred             --CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107          217 --DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQ  294 (331)
Q Consensus       217 --d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  294 (331)
                        .+.|.+||+.+. +.+.. ...+.  +..++|+|++ .++++++. +.+.+|+......+.+.++..+......+.++
T Consensus       283 ~~~~~v~viD~~t~-~~v~~-i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~  356 (361)
T 2oiz_A          283 FPAAEIWVMDTKTK-QRVAR-IPGRD--ALSMTIDQQR-NLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFH  356 (361)
T ss_dssp             CCCSEEEEEETTTT-EEEEE-EECTT--CCEEEEETTT-TEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEEC
T ss_pred             CCCceEEEEECCCC-cEEEE-EecCC--eeEEEECCCC-CEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEec
Confidence              358999999985 44554 23333  9999999998 46666655 88899987662227888876677778899999


Q ss_pred             CCC
Q 020107          295 RGR  297 (331)
Q Consensus       295 ~~~  297 (331)
                      |++
T Consensus       357 p~G  359 (361)
T 2oiz_A          357 PVG  359 (361)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            987

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.64  E-value=1.5e-13  Score=110.23  Aligned_cols=233  Identities=6%  Similarity=-0.083  Sum_probs=155.9

Q ss_pred             cceeEeeecCCCCCcEEE-EEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           11 NADAVEFCPQDSYHHVLA-ASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la-~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      .+..+++.+.+   ++++ +..          .++.|.+|+..+..  .......+...+.++++.++    +.++++..
T Consensus        25 ~p~~i~~~~~g---~l~v~~~~----------~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~----g~l~v~~~   85 (270)
T 1rwi_B           25 SPSGVAVDSAG---NVYVTSEG----------MYGRVVKLATGSTG--TTVLPFNGLYQPQGLAVDGA----GTVYVTDF   85 (270)
T ss_dssp             CEEEEEECTTC---CEEEEECS----------SSCEEEEECC-------EECCCCSCCSCCCEEECTT----CCEEEEET
T ss_pred             CccceEECCCC---CEEEEccC----------CCCcEEEecCCCcc--cceEeeCCcCCcceeEECCC----CCEEEEcC
Confidence            56677777665   6666 433          47899999876543  22222223356889999998    77666666


Q ss_pred             CCccE-EEecCCCccc------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           90 ADGGL-LRDITGEKIS------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                       ++.+ .|+..+....      ...+..++++++++.+++...++.|.+|+..+...  ..........+..++++| ++
T Consensus        86 -~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~~~~~~~~~~p~~i~~~~-~g  161 (270)
T 1rwi_B           86 -NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TVLPFTGLNDPDGVAVDN-SG  161 (270)
T ss_dssp             -TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--EECCCCSCCSCCCEEECT-TC
T ss_pred             -CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--EeeccccCCCceeEEEeC-CC
Confidence             7777 7877654321      25678999999998777767788999997654332  111122234578899998 66


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG  242 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  242 (331)
                      +++++...++.|.+||............   +...+..+++++ ++.++++...++.|.+||.... .. ......+...
T Consensus       162 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~---~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~  235 (270)
T 1rwi_B          162 NVYVTDTDNNRVVKLEAESNNQVVLPFT---DITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGST-TS-TVLPFTGLNT  235 (270)
T ss_dssp             CEEEEEGGGTEEEEECTTTCCEEECCCS---SCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCS-CC-EECCCCSCSC
T ss_pred             CEEEEECCCCEEEEEecCCCceEeeccc---CCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCC-cc-eeeccCCCCC
Confidence            7777777789999999886653222111   336789999999 8877777777889999998753 22 2211233357


Q ss_pred             eEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      +..++++|++ .++++...++.+.++++...
T Consensus       236 p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          236 PLAVAVDSDR-TVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EEEEEECTTC-CEEEEEGGGTEEEEECCCGG
T ss_pred             ceeEEECCCC-CEEEEECCCCEEEEEcCCCc
Confidence            8999999997 56666667788777776553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.64  E-value=1.3e-14  Score=123.02  Aligned_cols=235  Identities=10%  Similarity=-0.001  Sum_probs=144.5

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcC-Cc--cE-EEecCCCccc-----Ccc-EEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADA-DG--GL-LRDITGEKIS-----SSM-CLCLEWNPSATSITVGLSDGSVSIVSVVES  137 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~-dg--~i-iw~~~~~~~~-----~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  137 (331)
                      .+..++|+|+    +++|+.... ++  .+ +|++.+++..     ... ...+.|+|+++.|+.++.++.|++||+.++
T Consensus        37 ~~~~~~~Spd----G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~  112 (396)
T 3c5m_A           37 YFYQKCFTQD----GKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL  112 (396)
T ss_dssp             CTTSCCBCTT----SCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             eeecCcCCCC----CCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence            3778899999    888776644 34  34 7777765431     122 223789999999999999999999999887


Q ss_pred             ceeeeeeeecccceeEE-------------------EeeCCCCCcEEEEE-----cCCCeEEEEEccCCCceeeeecccC
Q 020107          138 QLEVLQQWKAHEFELWA-------------------TSFDVHQPHMVYTG-----SDDCKFSGWDIRESPFKLAFQNSKI  193 (331)
Q Consensus       138 ~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~  193 (331)
                      +...+...  +......                   +.|+| +++.++..     ..+..|.+||+.+++..... .   
T Consensus       113 ~~~~~~~~--~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~---  185 (396)
T 3c5m_A          113 EEQVIYTV--DEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-Q---  185 (396)
T ss_dssp             CEEEEEEC--CTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-E---
T ss_pred             CcEEEEec--ccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeec-c---
Confidence            65333322  2222222                   45677 55554433     35678999999987754433 2   


Q ss_pred             CCcceEEEEEecCCCCEEEEEecC------CeEEEEEecCCCCCceeeeeec-CCceEEEEECCCCCCeEEEEEecC---
Q 020107          194 HKMGVCCIASIPSDSNTLLTGSYD------EYLRVWDVRSISKPVNETSVCL-GGGVWRIKHHPFIPGLVLAACMHN---  263 (331)
Q Consensus       194 ~~~~v~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~---  263 (331)
                      +...+..+.|+|.++..|+..+.+      ..|.+||+... . ...+.... ...+..++|+|++..+++++...+   
T Consensus       186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (396)
T 3c5m_A          186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD  263 (396)
T ss_dssp             ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-C-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred             CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-c-eeEeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence            567789999999446666665543      35888887653 2 22211211 235788999999844444433222   


Q ss_pred             -cEEEEEEcCcccceeEEeecCCcceeeeeecC-CCCcccccccCcEEEEeec---------------CCCeEEEEcCCC
Q 020107          264 -GFAVVKVGGEKAEVLETYAKHGSLAYGADWQR-GRSSLEGKRKNSLVATCSF---------------YDRLLRIWMPES  326 (331)
Q Consensus       264 -~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~l~s~~~---------------~d~~i~iW~~~~  326 (331)
                       .+.+|++.......+..+.+    .. +.|+| ++         +++++++.               .+..|++||+++
T Consensus       264 ~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg---------~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          264 RVIYKANPETLENEEVMVMPP----CS-HLMSNFDG---------SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             EEEEEECTTTCCEEEEEECCS----EE-EEEECSSS---------SEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred             ceEEEEECCCCCeEEeeeCCC----CC-CCccCCCC---------ceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence             25556554421222222222    22 88999 88         57776430               247899999987


Q ss_pred             ccc
Q 020107          327 DCL  329 (331)
Q Consensus       327 ~~~  329 (331)
                      +..
T Consensus       330 ~~~  332 (396)
T 3c5m_A          330 KSA  332 (396)
T ss_dssp             TBC
T ss_pred             Cce
Confidence            653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=5.9e-13  Score=106.96  Aligned_cols=227  Identities=11%  Similarity=0.060  Sum_probs=156.0

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec-CcEeEEEEcCCCCCCCCeEEEEcC-------CccEEE
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT-AGIFDIKWSPVGGNAGPFLAQADA-------DGGLLR   96 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~-------dg~iiw   96 (331)
                      ++|++++          .++.|++||.++++ .+..+ ..+. ..+.++.++|+    +++|++...       +|.++|
T Consensus         6 ~~lv~~~----------~~~~v~~~d~~tG~-~~w~~-~~~~~~~~~~~~~~pd----G~ilvs~~~~V~~~d~~G~~~W   69 (276)
T 3no2_A            6 HLLVGGS----------GWNKIAIINKDTKE-IVWEY-PLEKGWECNSVAATKA----GEILFSYSKGAKMITRDGRELW   69 (276)
T ss_dssp             EEEEECT----------TCSEEEEEETTTTE-EEEEE-ECCTTCCCCEEEECTT----SCEEEECBSEEEEECTTSCEEE
T ss_pred             cEEEeeC----------CCCEEEEEECCCCe-EEEEe-CCCccCCCcCeEECCC----CCEEEeCCCCEEEECCCCCEEE
Confidence            6888887          79999999997776 33333 3343 46899999999    888884321       233366


Q ss_pred             ecCCCcccCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeee------cccceeEEEeeCCCCCcEEEEEc
Q 020107           97 DITGEKISSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWK------AHEFELWATSFDVHQPHMVYTGS  169 (331)
Q Consensus        97 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~  169 (331)
                      .+...  ....+.++.+.++|+.+++.+. ++.|..+|. +++.  +..+.      .+......+++.+ +++++++..
T Consensus        70 ~~~~~--~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~--l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~  143 (276)
T 3no2_A           70 NIAAP--AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEV--LSKTEFETGIERPHAQFRQINKNK-KGNYLVPLF  143 (276)
T ss_dssp             EEECC--TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCE--EEEEEECCSCSSGGGSCSCCEECT-TSCEEEEET
T ss_pred             EEcCC--CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCE--EEEEeccCCCCcccccccCceECC-CCCEEEEec
Confidence            66542  1245778899999999999887 888888886 4443  33322      1222345566777 789999999


Q ss_pred             CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC------Cce
Q 020107          170 DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG------GGV  243 (331)
Q Consensus       170 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~v  243 (331)
                      .++.|..||.. ++.+..+..    ...+.++...+ ++++++++..++.|..+|..++ +.+.+. ....      ..+
T Consensus       144 ~~~~v~~~d~~-G~~~w~~~~----~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG-~~~w~~-~~~~~~~~~l~~~  215 (276)
T 3no2_A          144 ATSEVREIAPN-GQLLNSVKL----SGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESN-RIVRRV-NANDIEGVQLFFV  215 (276)
T ss_dssp             TTTEEEEECTT-SCEEEEEEC----SSCCCEEEECT-TSCEEEECBTTSEEEEECTTTC-CEEEEE-EGGGSBSCCCSEE
T ss_pred             CCCEEEEECCC-CCEEEEEEC----CCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCC-cEEEEe-cCCCCCCcccccc
Confidence            99999999998 877777665    23456677788 8999999988889999999876 444441 2221      237


Q ss_pred             EEEEECCCCCCeEEEEEecC---------cEEEEEEcCcccceeEEeecC
Q 020107          244 WRIKHHPFIPGLVLAACMHN---------GFAVVKVGGEKAEVLETYAKH  284 (331)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~h  284 (331)
                      ..++..+++ .++++ ...+         ..+++.+... ++.+-++..+
T Consensus       216 ~~~~~~~~G-~i~v~-~~~g~~~~~~~~~~~~~~~~~~~-g~~~W~~~~~  262 (276)
T 3no2_A          216 AQLFPLQNG-GLYIC-NWQGHDREAGKGKHPQLVEIDSE-GKVVWQLNDK  262 (276)
T ss_dssp             EEEEECTTS-CEEEE-EECTTCTTGGGSCCCSEEEECTT-SBEEEEECCT
T ss_pred             ccceEcCCC-CEEEE-eccCccccccccCCceEEEECCC-CCEEEEecCc
Confidence            788888885 44444 4322         2357887654 7777777654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.61  E-value=8.4e-13  Score=109.91  Aligned_cols=233  Identities=9%  Similarity=0.030  Sum_probs=144.2

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+..+.|+|++   +.||..+.....     ....|.+|++.+++  ...+...+ . +..++|+|+    ++.|+.++.
T Consensus        60 ~~~~~~~SpDg---~~la~~~~~~~~-----~~~~l~~~~~~~g~--~~~l~~~~-~-~~~~~wspd----g~~l~~~~~  123 (347)
T 2gop_A           60 NATMPRISPDG---KKIAFMRANEEK-----KVSEIWVADLETLS--SKKILEAK-N-IRSLEWNED----SRKLLIVGF  123 (347)
T ss_dssp             SCEEEEECTTS---SEEEEEEEETTT-----TEEEEEEEETTTTE--EEEEEEES-E-EEEEEECTT----SSEEEEEEE
T ss_pred             cCCCeEECCCC---CEEEEEEeccCC-----CcceEEEEECCCCc--eEEEEcCC-C-ccceeECCC----CCEEEEEEc
Confidence            45667888776   788877621000     12247777877654  33343333 3 999999999    888887763


Q ss_pred             C---------------------------ccE-EEecCCCcc-cC---ccEEEEEEcCCCCeEEEEecCC-------eEEE
Q 020107           91 D---------------------------GGL-LRDITGEKI-SS---SMCLCLEWNPSATSITVGLSDG-------SVSI  131 (331)
Q Consensus        91 d---------------------------g~i-iw~~~~~~~-~~---~~v~~~~~~~~~~~l~~~~~dg-------~i~i  131 (331)
                      +                           ..+ +|++.+++. ..   ..+..+.|+|++ .++++..++       ...+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l  202 (347)
T 2gop_A          124 KRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDI  202 (347)
T ss_dssp             CCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEE
T ss_pred             cCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccE
Confidence            2                           234 788876654 10   156688999999 777775542       3445


Q ss_pred             EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC--------CeEEEEEccCCCceeeeecccCCCcceEE-EE
Q 020107          132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--------CKFSGWDIRESPFKLAFQNSKIHKMGVCC-IA  202 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~-~~  202 (331)
                      |.+.+++.   ..+..+ ..+..+  +| +++.|+.++.+        ..|.+||  +++......   .+...+.. +.
T Consensus       203 ~~~d~~~~---~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~~~~~~~~~~~  270 (347)
T 2gop_A          203 YIWEDGKE---EKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD---EVDRGVGQAKI  270 (347)
T ss_dssp             EEEETTEE---EEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---TCCSEEEEEEE
T ss_pred             EEeCCCce---EEeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCceEeccc---cCCcccCCccE
Confidence            54444433   223333 344444  88 66766665533        4688888  444332222   26677886 88


Q ss_pred             EecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE-EEEEEcCcccceeEEe
Q 020107          203 SIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF-AVVKVGGEKAEVLETY  281 (331)
Q Consensus       203 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  281 (331)
                      |+  ++ ++++++.++.+++| +.+ .+. .. ...+.+.|..++|+|   ..+++.+.++.. .+|.+.   ++ ...+
T Consensus       271 ~s--dg-~~~~~~~~~~~~l~-~~~-g~~-~~-~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~---g~-~~~l  336 (347)
T 2gop_A          271 KD--GK-VYFTLFEEGSVNLY-IWD-GEI-KP-IAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD---GE-EKQL  336 (347)
T ss_dssp             ET--TE-EEEEEEETTEEEEE-EES-SSE-EE-EECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES---SS-EEEC
T ss_pred             Ec--Cc-EEEEEecCCcEEEE-EcC-Cce-EE-EecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC---Cc-EEEe
Confidence            87  56 88999999999999 884 333 32 345678899999999   466666665554 677765   22 3445


Q ss_pred             ecCCc
Q 020107          282 AKHGS  286 (331)
Q Consensus       282 ~~h~~  286 (331)
                      ..|..
T Consensus       337 t~~n~  341 (347)
T 2gop_A          337 TDYND  341 (347)
T ss_dssp             CCTTS
T ss_pred             ccccH
Confidence            55544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=2e-12  Score=118.06  Aligned_cols=237  Identities=8%  Similarity=-0.029  Sum_probs=151.5

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD   91 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   91 (331)
                      +..++|+|++   ++||.+....     ++....|++||+.+++ ....... + ..+..++|+|+    ++.|+.++.+
T Consensus       127 ~~~~~~SPDg---~~la~~~~~~-----G~~~~~i~v~d~~tg~-~~~~~~~-~-~~~~~~~wspD----g~~l~~~~~~  191 (710)
T 2xdw_A          127 LRGYAFSEDG---EYFAYGLSAS-----GSDWVTIKFMKVDGAK-ELPDVLE-R-VKFSCMAWTHD----GKGMFYNAYP  191 (710)
T ss_dssp             EEEEEECTTS---SEEEEEEEET-----TCSCEEEEEEETTTTE-EEEEEEE-E-ECSCCEEECTT----SSEEEEEECC
T ss_pred             EEEEEECCCC---CEEEEEEcCC-----CCceEEEEEEECCCCC-CCccccc-C-cccceEEEEeC----CCEEEEEEEC
Confidence            4567777666   8888876210     0012289999999876 2222212 2 23678999999    8888888877


Q ss_pred             cc----------------E-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEec-----CCeEEEEEccc---
Q 020107           92 GG----------------L-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLS-----DGSVSIVSVVE---  136 (331)
Q Consensus        92 g~----------------i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~---  136 (331)
                      +.                + +|++.+.+.          +...+..+.|+|+|++|+.++.     +..|.+||+.+   
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred             CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence            65                5 888876542          1334678999999999887765     56899999986   


Q ss_pred             ---cceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-C---CeEEEEEccCCCc--eeeeecccCCC--cceEEEEEec
Q 020107          137 ---SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-D---CKFSGWDIRESPF--KLAFQNSKIHK--MGVCCIASIP  205 (331)
Q Consensus       137 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~--~~~~~~~~~~~--~~v~~~~~~~  205 (331)
                         +.. ....+..+...+.. .|+| ++..|+..+. +   +.|.+||+.++..  ...+..   |.  ..+..+.|++
T Consensus       272 ~~~~~~-~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~~~~~~~~~  345 (710)
T 2xdw_A          272 GITGIL-KWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP---EHEKDVLEWVACVR  345 (710)
T ss_dssp             SSCSSC-CCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCSSCEEEEEEEET
T ss_pred             ccCCcc-ceEEeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC---CCCCCeEEEEEEEc
Confidence               421 23445555555544 4777 4454444433 3   3699999987642  233332   33  3688899997


Q ss_pred             CCCCEEEEEecCCeE--EEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec---CcEEEEEEcC
Q 020107          206 SDSNTLLTGSYDEYL--RVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH---NGFAVVKVGG  272 (331)
Q Consensus       206 ~~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  272 (331)
                       ++.++++...|+..  .+||+.++ +.+.. +..+.+.+..+.++|+++.++++.++.   ..+..|++..
T Consensus       346 -~~~lv~~~~~~g~~~l~~~~~~~g-~~~~~-l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          346 -SNFLVLCYLHDVKNTLQLHDLATG-ALLKI-FPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             -TTEEEEEEEETTEEEEEEEETTTC-CEEEE-ECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             -CCEEEEEEEECCEEEEEEEECCCC-CEEEe-cCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence             78888888889865  45565444 33333 344577889999999874444444332   4555565543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=6.7e-13  Score=120.91  Aligned_cols=236  Identities=9%  Similarity=-0.030  Sum_probs=151.5

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcE--eEEEEcCCCCCCCCeEEEEc
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGI--FDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~l~~~~   89 (331)
                      +..++|+|++   ++||.+....     ++.+..|++||+.+++ .+.   ..+...+  ..++|+|+    ++.|+.++
T Consensus       123 ~~~~~~SPDG---~~la~~~~~~-----G~~~~~i~v~dl~tg~-~~~---~~~~~~~~~~~~~wspD----g~~l~~~~  186 (695)
T 2bkl_A          123 LGTWAVSWDG---KKVAFAQKPN-----AADEAVLHVIDVDSGE-WSK---VDVIEGGKYATPKWTPD----SKGFYYEW  186 (695)
T ss_dssp             EEEEEECTTS---SEEEEEEEET-----TCSCCEEEEEETTTCC-BCS---SCCBSCCTTCCCEECTT----SSEEEEEE
T ss_pred             EEEEEECCCC---CEEEEEECCC-----CCceEEEEEEECCCCC-CcC---CcccCcccccceEEecC----CCEEEEEE
Confidence            5567777666   8888765221     1245789999999876 220   1122223  68999999    88999888


Q ss_pred             CCcc-------------E-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCC----eEEEEEccccceee
Q 020107           90 ADGG-------------L-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDG----SVSIVSVVESQLEV  141 (331)
Q Consensus        90 ~dg~-------------i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~  141 (331)
                      .+..             + +|++.+...          +...+..+.|+|+|++|+.++.++    .|.+++..+++.  
T Consensus       187 ~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~--  264 (695)
T 2bkl_A          187 LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF--  264 (695)
T ss_dssp             CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC--
T ss_pred             ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce--
Confidence            8765             5 888876542          124678999999999998887765    677776654443  


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEc---CCCeEEEEEccCCCc--eeeeecccCC-CcceEEEEEecCCCCEEEEEe
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGS---DDCKFSGWDIRESPF--KLAFQNSKIH-KMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~  215 (331)
                       ..+..+...+....+ + ++.+++...   .++.|.+||+.++..  ...+..  .+ ...+..++++  ++.++++..
T Consensus       265 -~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~l~~~~~~--~~~lv~~~~  337 (695)
T 2bkl_A          265 -RLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP--EDSSASLLSVSIV--GGHLSLEYL  337 (695)
T ss_dssp             -EEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC--CCSSCEEEEEEEE--TTEEEEEEE
T ss_pred             -EEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec--CCCCCeEEEEEEE--CCEEEEEEE
Confidence             334445555566666 4 334555544   258999999987653  122222  13 4567888887  577889999


Q ss_pred             cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec---CcEEEEEEcC
Q 020107          216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH---NGFAVVKVGG  272 (331)
Q Consensus       216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  272 (331)
                      .|+..++|.+.........+.....+.+..+.++|+++.++++..+.   ..+..|++..
T Consensus       338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            99999998776322333331122366788889999874444444432   3455555544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.56  E-value=5.3e-11  Score=96.70  Aligned_cols=270  Identities=6%  Similarity=-0.029  Sum_probs=174.9

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-eeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-RMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      .+.+|.+.+.+   ++.++..          .++.|.+|+.. ..  +..+. ......+.++++.++    +.++++..
T Consensus        21 ~p~~i~~d~~g---~l~v~~~----------~~~~v~~~~~~-~~--~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~   80 (300)
T 2qc5_A           21 GPYGITSSEDG---KVWFTQH----------KANKISSLDQS-GR--IKEFEVPTPDAKVMCLIVSSL----GDIWFTEN   80 (300)
T ss_dssp             CEEEEEECTTS---CEEEEET----------TTTEEEEECTT-SC--EEEEECSSTTCCEEEEEECTT----SCEEEEET
T ss_pred             CcceeeECCCC---CEEEEcC----------CCCeEEEECCC-Cc--eEEEECCCCCCcceeEEECCC----CCEEEEec
Confidence            55667666654   6666654          47899999987 33  33321 222356899999988    77777776


Q ss_pred             CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107           90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP  162 (331)
Q Consensus        90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (331)
                      .++.+ .++......      ....+.++++.++++..++...++.|..++.. ++... ..+......+..+++.+ ++
T Consensus        81 ~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~~~~~~~~i~~d~-~g  157 (300)
T 2qc5_A           81 GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YDLPNKGSYPAFITLGS-DN  157 (300)
T ss_dssp             TTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT-TS
T ss_pred             CCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-ccCCCCCCCceeEEECC-CC
Confidence            67777 666552111      13567899999999877777768899999987 54321 12232345688999998 66


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG  242 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  242 (331)
                      +++++...++.|..+|. +++.. .+.. +.+...+..+++.+ ++++.++....+.|.+||. ++ .............
T Consensus       158 ~l~v~~~~~~~i~~~~~-~g~~~-~~~~-~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~  231 (300)
T 2qc5_A          158 ALWFTENQNNSIGRITN-TGKLE-EYPL-PTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TG-EISEYDIPTPNAR  231 (300)
T ss_dssp             SEEEEETTTTEEEEECT-TCCEE-EEEC-SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TC-CEEEEECSSTTCC
T ss_pred             CEEEEecCCCeEEEECC-CCcEE-EeeC-CCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CC-cEEEEECCCCCCC
Confidence            77777777889999998 45433 2332 22456789999999 8877777666788999998 32 2222111233466


Q ss_pred             eEEEEECCCCCCeEEEEEecCcEEEEEEcCccccee-EEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107          243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVL-ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI  321 (331)
Q Consensus       243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i  321 (331)
                      +..+++.+++ .++++....+++..++.  . ++.. ..+......+.++.+.+++         ++.++ + .. .|..
T Consensus       232 ~~~i~~d~~g-~l~v~~~~~~~i~~~~~--~-g~~~~~~~~~~~~~~~~i~~~~~g---------~l~v~-~-~~-~i~~  295 (300)
T 2qc5_A          232 PHAITAGKNS-EIWFTEWGANQIGRITN--D-NTIQEYQLQTENAEPHGITFGKDG---------SVWFA-L-KC-KIGK  295 (300)
T ss_dssp             EEEEEECSTT-CEEEEETTTTEEEEECT--T-SCEEEEECCSTTCCCCCEEECTTS---------CEEEE-C-SS-EEEE
T ss_pred             ceEEEECCCC-CEEEeccCCCeEEEECC--C-CcEEEEECCccCCccceeEeCCCC---------CEEEE-c-cC-ceEE
Confidence            8899999986 45555444577655554  2 3322 2223344568889999987         44444 4 44 6776


Q ss_pred             EcCC
Q 020107          322 WMPE  325 (331)
Q Consensus       322 W~~~  325 (331)
                      ++++
T Consensus       296 ~~p~  299 (300)
T 2qc5_A          296 LNLN  299 (300)
T ss_dssp             EEEC
T ss_pred             eCCC
Confidence            6654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=1.6e-10  Score=101.88  Aligned_cols=291  Identities=12%  Similarity=0.041  Sum_probs=183.1

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEecc--CcccceEEeEeeecCcEeEEEEc----CCCCC
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVN--AEEKNLELLYRMDTAGIFDIKWS----PVGGN   80 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~----~~~~~   80 (331)
                      .....+..+.++|++   +++.+++          .++.|.+||+.  +.+ .+..+..  ......++|+    |+   
T Consensus       194 ~~g~~p~~v~~SpDG---r~lyv~~----------~dg~V~viD~~~~t~~-~v~~i~~--G~~P~~ia~s~~~~pD---  254 (567)
T 1qks_A          194 DTGYAVHISRLSASG---RYLFVIG----------RDGKVNMIDLWMKEPT-TVAEIKI--GSEARSIETSKMEGWE---  254 (567)
T ss_dssp             ECSSCEEEEEECTTS---CEEEEEE----------TTSEEEEEETTSSSCC-EEEEEEC--CSEEEEEEECCSTTCT---
T ss_pred             eCCCCccceEECCCC---CEEEEEc----------CCCeEEEEECCCCCCc-EeEEEec--CCCCceeEEccccCCC---
Confidence            344455678888776   7888887          68999999995  433 3443322  2346799999    68   


Q ss_pred             CCCeEEEEcCC-ccE-EEecCCCccc-----------------CccEEEEEEcCCCCeE-EEEecCCeEEEEEcccccee
Q 020107           81 AGPFLAQADAD-GGL-LRDITGEKIS-----------------SSMCLCLEWNPSATSI-TVGLSDGSVSIVSVVESQLE  140 (331)
Q Consensus        81 ~~~~l~~~~~d-g~i-iw~~~~~~~~-----------------~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~  140 (331)
                       ++++++++.. +.+ ++|..+.+..                 ...+..+..++++..+ +....+|.|.++|....+..
T Consensus       255 -Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~  333 (567)
T 1qks_A          255 -DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL  333 (567)
T ss_dssp             -TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred             -CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc
Confidence             8888877665 666 7776654321                 1256778888876654 44455799999998765433


Q ss_pred             eeeeeecccceeEEEeeCCCCCcEE-EEEcCCCeEEEEEccCCCceeeeec--ccCCCcceEEEEEecCCCCEEEEEe-c
Q 020107          141 VLQQWKAHEFELWATSFDVHQPHMV-YTGSDDCKFSGWDIRESPFKLAFQN--SKIHKMGVCCIASIPSDSNTLLTGS-Y  216 (331)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~-~  216 (331)
                      .+..+. .......+.|+| +++++ ++...++.|.++|+.+++....+..  ...|.+.-..+ ++|..+..++++. .
T Consensus       334 ~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g  410 (567)
T 1qks_A          334 KTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMG  410 (567)
T ss_dssp             EEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSS
T ss_pred             eeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCC
Confidence            333333 334567889999 55555 5555789999999999876555543  12354322222 5772245555554 4


Q ss_pred             CCeEEEEEecCCC------CCceeeeeecCCceEEEEECCCCCCeEEEEE-e-----cCcEEEEEEcCc--cc--ceeEE
Q 020107          217 DEYLRVWDVRSIS------KPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-M-----HNGFAVVKVGGE--KA--EVLET  280 (331)
Q Consensus       217 d~~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~--~~--~~~~~  280 (331)
                      ++.|.++|....+      +.+.. .......-..+..+|+++.+++... .     .+.+.++++...  .+  ..+..
T Consensus       411 ~~~Vsvid~~~~~~~~~~~kvv~~-i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~  489 (567)
T 1qks_A          411 DDSVALIGTDPEGHPDNAWKILDS-FPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT  489 (567)
T ss_dssp             SSEEEEEECCTTTCTTTBTSEEEE-EECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEE
T ss_pred             CCeEEEecCCCCCCccccCEEEEE-EecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEE
Confidence            6899999998732      22222 2222333355788999744444331 1     458899998765  11  11223


Q ss_pred             ee--------cCCcceeeeeecCCCCcccccccCcEEEEeec---CCCeEEEEcCCCccc
Q 020107          281 YA--------KHGSLAYGADWQRGRSSLEGKRKNSLVATCSF---YDRLLRIWMPESDCL  329 (331)
Q Consensus       281 ~~--------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~---~d~~i~iW~~~~~~~  329 (331)
                      +.        .-...+..+.|+|++.        .+++|...   .++.|.++|.++..+
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~G~--------~~~~s~~~~~~~~~~i~v~D~~t~~~  541 (567)
T 1qks_A          490 LPIAEWAGITEGQPRVVQGEFNKDGT--------EVWFSVWNGKDQESALVVVDDKTLEL  541 (567)
T ss_dssp             ECHHHHHTCCSSCCEEEEEEECTTSS--------EEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             eccccccccCCCCcceEeeeECCCCC--------EEEEEeecCCCCCCcEEEEECCCceE
Confidence            32        1235788999999995        45555320   279999999988754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=4.2e-11  Score=100.34  Aligned_cols=257  Identities=10%  Similarity=-0.049  Sum_probs=159.1

Q ss_pred             cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC----------CccE-EEecCCCcccC--------
Q 020107           45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA----------DGGL-LRDITGEKISS--------  105 (331)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------dg~i-iw~~~~~~~~~--------  105 (331)
                      .|.++|..+.+ .+..+..+ ..+  .++++|+    ++.++++..          ++.+ ++|..+.+...        
T Consensus        48 ~v~v~D~~t~~-~~~~i~~g-~~p--~i~~spD----g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~  119 (373)
T 2mad_H           48 QQWVLDAGSGS-ILGHVNGG-FLP--NPVAAHS----GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP  119 (373)
T ss_pred             EEEEEECCCCe-EEEEecCC-CCC--CeEECCC----CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc
Confidence            88999998775 33333222 222  9999999    888888862          4566 88887643311        


Q ss_pred             -----ccEEEEEEcCCCCeEEEEec--CCeEEEEEccccceeeeee-eecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107          106 -----SMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQQ-WKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW  177 (331)
Q Consensus       106 -----~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (331)
                           .....+.|+|+|++|+++..  ++.|.++| .+++.  +.. +.. ..   ++.+.|.....+++.+.||.+.++
T Consensus       120 ~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~--~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~v  192 (373)
T 2mad_H          120 RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS--DDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKT  192 (373)
T ss_pred             ccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE--EeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEE
Confidence                 12347899999999998874  58899999 88764  444 432 11   244455455677788889999999


Q ss_pred             EccCCCceeeeecc--cCCCcc-eEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee----------cCCceE
Q 020107          178 DIRESPFKLAFQNS--KIHKMG-VCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC----------LGGGVW  244 (331)
Q Consensus       178 d~~~~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~v~  244 (331)
                      |. +++........  .....+ .....+.+ ++..++..+..+.+.+.|+......+...+..          ......
T Consensus       193 d~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~  270 (373)
T 2mad_H          193 DH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ  270 (373)
T ss_pred             EC-CCcEEEEEeccccccCCcceeecceeEe-cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceE
Confidence            99 77654222100  001222 22345666 44444444467899999987542221111110          122344


Q ss_pred             EEEECCCCCCeEEEEEe---------cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107          245 RIKHHPFIPGLVLAACM---------HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY  315 (331)
Q Consensus       245 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~  315 (331)
                      .+.++|+++.++++...         .+.+.+++...  .+.+.++.. .....+++|+|++.        .+++++...
T Consensus       271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t--~~vv~~i~~-g~~p~~i~~s~Dg~--------~~l~v~~~~  339 (373)
T 2mad_H          271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--GQTSSQISL-GHDVDAISVAQDGG--------PDLYALSAG  339 (373)
T ss_pred             eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC--CEEEEEEEC-CCCcCeEEECCCCC--------eEEEEEcCC
Confidence            57889988444444321         23555555544  577777753 33578999999982        266666524


Q ss_pred             CCeEEEEcCCCccc
Q 020107          316 DRLLRIWMPESDCL  329 (331)
Q Consensus       316 d~~i~iW~~~~~~~  329 (331)
                      ++.|.++|++++..
T Consensus       340 ~~~V~ViD~~t~~v  353 (373)
T 2mad_H          340 TEVLHIYDAGAGDQ  353 (373)
T ss_pred             CCeEEEEECCCCCE
Confidence            89999999988753

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.55  E-value=8.5e-12  Score=102.23  Aligned_cols=236  Identities=11%  Similarity=0.018  Sum_probs=151.9

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEE-------EcCCccE-EEecCCCcc----------cCccEEEEEEcCC-CCeEEEEecC
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQ-------ADADGGL-LRDITGEKI----------SSSMCLCLEWNPS-ATSITVGLSD  126 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~-------~~~dg~i-iw~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d  126 (331)
                      -....+++|.++    +.++++       ...++.+ .|+..+.+.          +...+.+++++++ +++++ ++..
T Consensus        17 ~~~~~~~~~~~~----g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~   91 (314)
T 1pjx_A           17 IPGAEGPVFDKN----GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMR   91 (314)
T ss_dssp             CTTCEEEEECTT----SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETT
T ss_pred             CCCccCceECCC----CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECC
Confidence            345689999988    777777       4566777 888665443          2256789999999 65444 4444


Q ss_pred             CeEEEEEccccceeee-eeee--cccceeEEEeeCCCCCcEEEEEcCC---------------CeEEEEEccCCCceeee
Q 020107          127 GSVSIVSVVESQLEVL-QQWK--AHEFELWATSFDVHQPHMVYTGSDD---------------CKFSGWDIRESPFKLAF  188 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~  188 (331)
                      +.|.+||.+ ++...+ ....  .....+.++++++ +++++++...+               +.|..+|.. ++... +
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~  167 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-V  167 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-E
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-e
Confidence            578999988 654222 1111  1123578999998 67777776554               567777765 44322 2


Q ss_pred             ecccCCCcceEEEEEe----cCCCCEEEEE-ecCCeEEEEEecCCCCC----ceeeeeecC-CceEEEEECCCCCCeEEE
Q 020107          189 QNSKIHKMGVCCIASI----PSDSNTLLTG-SYDEYLRVWDVRSISKP----VNETSVCLG-GGVWRIKHHPFIPGLVLA  258 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~----~~~~~~l~~~-~~d~~i~iwd~~~~~~~----~~~~~~~~~-~~v~~~~~~~~~~~~~~~  258 (331)
                      ..   +......++++    | +++.++.+ ..++.|.+||+......    .......+. ..+..+++++++ .++++
T Consensus       168 ~~---~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~  242 (314)
T 1pjx_A          168 DT---AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVA  242 (314)
T ss_dssp             EE---EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEE
T ss_pred             cc---CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEEEE
Confidence            22   33456889999    9 77655444 56789999998731121    111011222 567889999986 56655


Q ss_pred             EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          259 ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ...++++..|+...  ++.+..+..+...+.+++++|++.        .++++.. .++.|..|+++.
T Consensus       243 ~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~i~~~~dg~--------~l~v~~~-~~~~l~~~~~~~  299 (314)
T 1pjx_A          243 NWGSSHIEVFGPDG--GQPKMRIRCPFEKPSNLHFKPQTK--------TIFVTEH-ENNAVWKFEWQR  299 (314)
T ss_dssp             EETTTEEEEECTTC--BSCSEEEECSSSCEEEEEECTTSS--------EEEEEET-TTTEEEEEECSS
T ss_pred             EcCCCEEEEEcCCC--CcEeEEEeCCCCCceeEEECCCCC--------EEEEEeC-CCCeEEEEeCCC
Confidence            55667766665432  455566666667899999999982        2555555 678999999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.54  E-value=6.1e-12  Score=103.89  Aligned_cols=220  Identities=8%  Similarity=-0.033  Sum_probs=146.4

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----Cc------cEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SS------MCL  109 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~------~v~  109 (331)
                      .++.|.+||..+.+ .+..+ . .......++++++    ++++++...++.+ ++|..+.+..     ..      ...
T Consensus        62 ~~~~v~viD~~t~~-~~~~i-~-~~~~p~~i~~~~~----g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~  134 (328)
T 3dsm_A           62 NSHVIFAIDINTFK-EVGRI-T-GFTSPRYIHFLSD----EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE  134 (328)
T ss_dssp             GGTEEEEEETTTCC-EEEEE-E-CCSSEEEEEEEET----TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC
T ss_pred             CCCEEEEEECcccE-EEEEc-C-CCCCCcEEEEeCC----CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc
Confidence            47899999999876 33444 2 3466889999998    7555554478888 8888775542     12      445


Q ss_pred             EEEEcCCCCeEEEEe--cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC----------CeEEEE
Q 020107          110 CLEWNPSATSITVGL--SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD----------CKFSGW  177 (331)
Q Consensus       110 ~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~i~  177 (331)
                      .+++  ++..++++.  .++.|.++|+.+++.  +..+.. ......++++| ++++++++..+          +.|.++
T Consensus       135 ~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~--~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          135 QMVQ--YGKYVYVNCWSYQNRILKIDTETDKV--VDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             CEEE--ETTEEEEEECTTCCEEEEEETTTTEE--EEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             eEEE--ECCEEEEEcCCCCCEEEEEECCCCeE--EEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEE
Confidence            6667  455555555  488999999998764  444443 23456888998 67777776654          789999


Q ss_pred             EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE
Q 020107          178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL  257 (331)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  257 (331)
                      |..+++....+.. + ....+..++++| +++.|++...  .|.+||..+.+................++++|++..+++
T Consensus       209 d~~t~~v~~~~~~-~-~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyv  283 (328)
T 3dsm_A          209 DAETFTVEKQFKF-K-LGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYV  283 (328)
T ss_dssp             ETTTTEEEEEEEC-C-TTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEE
T ss_pred             ECCCCeEEEEEec-C-CCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEE
Confidence            9998876555554 1 134689999999 8888877654  899999987532111111112467899999996645555


Q ss_pred             EE----EecCcEEEEEEcCcccceeEEee
Q 020107          258 AA----CMHNGFAVVKVGGEKAEVLETYA  282 (331)
Q Consensus       258 ~~----~~~~~~~~~~~~~~~~~~~~~~~  282 (331)
                      +.    ..++.+.+|+..   ++.+.++.
T Consensus       284 a~~~~y~~~~~V~v~d~~---g~~~~~i~  309 (328)
T 3dsm_A          284 ADAIDYQQQGIVYRYSPQ---GKLIDEFY  309 (328)
T ss_dssp             EECTTSSSEEEEEEECTT---CCEEEEEE
T ss_pred             EcccccccCCEEEEECCC---CCEEEEEE
Confidence            54    345555555443   56666665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=1.3e-11  Score=101.13  Aligned_cols=234  Identities=12%  Similarity=0.056  Sum_probs=148.6

Q ss_pred             cceeEeeecCCCCCcEEEE-------EeecccCCCCCCCCCcEEEEeccCcccceEEeEe----eecCcEeEEEEcCCCC
Q 020107           11 NADAVEFCPQDSYHHVLAA-------STYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR----MDTAGIFDIKWSPVGG   79 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~-------g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~   79 (331)
                      .+.+++|.+.+   .++++       +.          .++.|.+|+..+++  +..+..    ++...+.+++++++  
T Consensus        19 ~~~~~~~~~~g---~l~~~~~~~~~~~~----------~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~i~~~~~--   81 (314)
T 1pjx_A           19 GAEGPVFDKNG---DFYIVAPEVEVNGK----------PAGEILRIDLKTGK--KTVICKPEVNGYGGIPAGCQCDRD--   81 (314)
T ss_dssp             TCEEEEECTTS---CEEEEETTCEETTE----------ECCEEEEECTTTCC--EEEEECCEETTEECCEEEEEECSS--
T ss_pred             CccCceECCCC---CEEEEEeccccCCC----------CCCEEEEEeCCCCc--EEEEEecccCCCCCCCceEEEecC--
Confidence            45678887554   67776       34          48899999987664  333322    14467899999988  


Q ss_pred             CCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEEcCCCCeEEEEecC---------------CeEEEE
Q 020107           80 NAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEWNPSATSITVGLSD---------------GSVSIV  132 (331)
Q Consensus        80 ~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~i~  132 (331)
                        +..|..++....+ .|+.. ++.           ....+.+++++++++..++...+               +.|..+
T Consensus        82 --~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~  158 (314)
T 1pjx_A           82 --ANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             --SSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             --CCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence              3344444433345 77765 322           11347899999999877776655               567777


Q ss_pred             EccccceeeeeeeecccceeEEEeeC----CCCCc-EEEEEcCCCeEEEEEcc-CCCc--eeeeecccCCC-cceEEEEE
Q 020107          133 SVVESQLEVLQQWKAHEFELWATSFD----VHQPH-MVYTGSDDCKFSGWDIR-ESPF--KLAFQNSKIHK-MGVCCIAS  203 (331)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~-~l~~~~~dg~i~i~d~~-~~~~--~~~~~~~~~~~-~~v~~~~~  203 (331)
                      +.. ++..   .+..+......++|+    | +++ ++++...++.|.+||+. .++.  ...+.....+. ..+..+++
T Consensus       159 ~~~-g~~~---~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~  233 (314)
T 1pjx_A          159 TTD-GQMI---QVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             CTT-SCEE---EEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred             CCC-CCEE---EeccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence            765 4432   222233346788998    8 554 45555678999999987 3331  11222222233 56889999


Q ss_pred             ecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          204 IPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       204 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      ++ +++++++...++.|.+||.+++ +.+.. ...+...+.+++++|++..++++...++++..+++..
T Consensus       234 d~-~G~l~v~~~~~~~i~~~d~~~g-~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          234 DE-DNNLLVANWGSSHIEVFGPDGG-QPKMR-IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             BT-TCCEEEEEETTTEEEEECTTCB-SCSEE-EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CC-CCCEEEEEcCCCEEEEEcCCCC-cEeEE-EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            99 8888888878899999998754 33333 2344577999999999622444444456766666543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.53  E-value=1.4e-12  Score=108.66  Aligned_cols=172  Identities=10%  Similarity=-0.001  Sum_probs=127.0

Q ss_pred             cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc---------eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107          104 SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ---------LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKF  174 (331)
Q Consensus       104 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  174 (331)
                      ....+..+++++....+++|+.++ +.+|+++..+         .++.... .+.. |+.++|   +++.|+++ .++.|
T Consensus        36 ~~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l  108 (388)
T 1xip_A           36 PFASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNAL  108 (388)
T ss_dssp             CSSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEE
T ss_pred             CcccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcE
Confidence            445688899999999999998875 4559877543         2222223 3555 999999   55788888 88999


Q ss_pred             EEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCC
Q 020107          175 SGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPG  254 (331)
Q Consensus       175 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  254 (331)
                      ++||+++.........   |...+.++.+.+ .  .+++++.||.|.+||+.....  .    .+...|++++|+|++  
T Consensus       109 ~v~dv~sl~~~~~~~~---~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~--~----~~~~~Vs~v~WSpkG--  174 (388)
T 1xip_A          109 YSLDLEELSEFRTVTS---FEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKST--K----QLAQNVTSFDVTNSQ--  174 (388)
T ss_dssp             EEEESSSTTCEEEEEE---CSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCE--E----EEEESEEEEEECSSE--
T ss_pred             EEEEchhhhccCccce---eecceeeEEecC-C--CEEEEECCCCEEEEEccCCcc--c----cccCCceEEEEcCCc--
Confidence            9999998765555554   777888887765 2  388899999999999997532  1    245689999999994  


Q ss_pred             eEEEEEecCcEEEEEEcCcccceeEEe------e---cCCcceeeeeecCCC
Q 020107          255 LVLAACMHNGFAVVKVGGEKAEVLETY------A---KHGSLAYGADWQRGR  297 (331)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~h~~~v~~~~~~~~~  297 (331)
                       ++++..++.+++|+......+...++      .   +|...|.++.|.+++
T Consensus       175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             -EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             -eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence             56777889988997765321114455      2   377899999999987

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.53  E-value=1.1e-12  Score=109.36  Aligned_cols=167  Identities=9%  Similarity=0.029  Sum_probs=126.3

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCc----------------ccCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEK----------------ISSSMCLCLEWNPSATSITVGLSDGSVSI  131 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  131 (331)
                      .++.+++++.    ..++++|+.++.++|++...+                .... |+.++|  +++.|+++ .++.|++
T Consensus        39 ~~nlLais~~----~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNS----KSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETT----TTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             cccEEEEcCC----CCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            6899999999    889999999988888754322                1245 999999  88999998 8899999


Q ss_pred             EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107          132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      ||+.+...  ......+...+.++.+.+ . + +++++.||.|.+||+.++....       +...|+|++|+| ++  +
T Consensus       111 ~dv~sl~~--~~~~~~~~~~v~~i~~~~-p-~-~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSp-kG--~  175 (388)
T 1xip_A          111 LDLEELSE--FRTVTSFEKPVFQLKNVN-N-T-LVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTN-SQ--L  175 (388)
T ss_dssp             EESSSTTC--EEEEEECSSCEEEEEECS-S-E-EEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECS-SE--E
T ss_pred             EEchhhhc--cCccceeecceeeEEecC-C-C-EEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcC-Cc--e
Confidence            99987542  334455677788888775 2 3 8888999999999999776432       356899999999 77  7


Q ss_pred             EEEecCCeEEEEEecCCCCC-ceeee-----e---ecCCceEEEEECCCCCCeEEE
Q 020107          212 LTGSYDEYLRVWDVRSISKP-VNETS-----V---CLGGGVWRIKHHPFIPGLVLA  258 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~-~~~~~-----~---~~~~~v~~~~~~~~~~~~~~~  258 (331)
                      +.|..||++++|+....... ...+.     .   .|...|.+|+|.+++ .++++
T Consensus       176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~  230 (388)
T 1xip_A          176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV  230 (388)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred             EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence            88999999999988864210 22210     1   367889999999984 44444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.53  E-value=6.2e-11  Score=96.25  Aligned_cols=232  Identities=9%  Similarity=0.022  Sum_probs=159.1

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES  137 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  137 (331)
                      ...+.++++.++    +.++++...++.+ .|+.. ...       ....+.++++++++...++...++.|..|+.. +
T Consensus        14 ~~~~~~i~~d~~----g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           14 DTGPYGITVSDK----GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             SCCEEEEEECTT----SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCccceEECCC----CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            356899999999    7777777667777 77766 322       23568899999999877777778999999986 3


Q ss_pred             ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107          138 QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD  217 (331)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  217 (331)
                      +... ..+......+..+++.| ++.++++...++.|..||. +++. ..+.. ......+..+++.+ ++.++++...+
T Consensus        88 ~~~~-~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~-~~~~~~~~~i~~~~-~g~l~v~~~~~  161 (299)
T 2z2n_A           88 IIKE-YTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKI-REYEL-PNKGSYPSFITLGS-DNALWFTENQN  161 (299)
T ss_dssp             CEEE-EECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCE-EEEEC-SSTTCCEEEEEECT-TSCEEEEETTT
T ss_pred             cEEE-EeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCE-EEecC-CCCCCCCceEEEcC-CCCEEEEeCCC
Confidence            3221 12222345688999998 7788887777889999998 4443 23322 22456789999999 88877777677


Q ss_pred             CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE-EeecCCcceeeeeecCC
Q 020107          218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE-TYAKHGSLAYGADWQRG  296 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~  296 (331)
                      +.|..||. ++ +............+..+++.+++ .++++....+.+..++. .  ++... ....+...+.++++.++
T Consensus       162 ~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~--g~~~~~~~~~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          162 NAIGRITE-SG-DITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-S--GEITEFKIPTPNARPHAITAGAG  235 (299)
T ss_dssp             TEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-T--CCEEEEECSSTTCCEEEEEECST
T ss_pred             CEEEEEcC-CC-cEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-C--CcEEEEECCCCCCCceeEEECCC
Confidence            89999998 43 22221112334568899999985 45555445667666655 2  33222 23334567889999999


Q ss_pred             CCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          297 RSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      +         +++++.. .++.|..|+..
T Consensus       236 g---------~l~v~~~-~~~~i~~~d~~  254 (299)
T 2z2n_A          236 I---------DLWFTEW-GANKIGRLTSN  254 (299)
T ss_dssp             T---------CEEEEET-TTTEEEEEETT
T ss_pred             C---------CEEEecc-CCceEEEECCC
Confidence            8         5666665 67899999974

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=1.1e-11  Score=99.60  Aligned_cols=201  Identities=8%  Similarity=-0.022  Sum_probs=138.4

Q ss_pred             CCeEEEEcCCccE-EEecCCCcc------cC-ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc-ccee
Q 020107           82 GPFLAQADADGGL-LRDITGEKI------SS-SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH-EFEL  152 (331)
Q Consensus        82 ~~~l~~~~~dg~i-iw~~~~~~~------~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v  152 (331)
                      +++|++++.++.+ +|+.++++.      +. ..+.++.+.|+|+.++  +.++.|..||. +++.  +..+..+ ...+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~--~W~~~~~~~~~~   79 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE--LWNIAAPAGCEM   79 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE--EEEEECCTTCEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE--EEEEcCCCCccc
Confidence            5688888888888 777766543      11 3578899999999888  45788999999 6654  5556543 3468


Q ss_pred             EEEeeCCCCCcEEEEEcC-CCeEEEEEccCCCceeeeeccc---CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107          153 WATSFDVHQPHMVYTGSD-DCKFSGWDIRESPFKLAFQNSK---IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      .++.+.| +++.+++.+. ++.|..+|. +++.+..+....   .+......+.+.+ +++++++...++.|..||.. +
T Consensus        80 ~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           80 QTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-S
T ss_pred             cccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-C
Confidence            8899998 7888888776 778888886 566555554311   1223455667788 99999999999999999987 5


Q ss_pred             CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCC------cceeeeeecCCC
Q 020107          229 SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHG------SLAYGADWQRGR  297 (331)
Q Consensus       229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------~~v~~~~~~~~~  297 (331)
                       +.+..  ......+..+...+++ ..+++....+.  ++.+...+++.+.++..+.      ..+.++...+++
T Consensus       156 -~~~w~--~~~~~~~~~~~~~~~g-~~~v~~~~~~~--v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G  224 (276)
T 3no2_A          156 -QLLNS--VKLSGTPFSSAFLDNG-DCLVACGDAHC--FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG  224 (276)
T ss_dssp             -CEEEE--EECSSCCCEEEECTTS-CEEEECBTTSE--EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS
T ss_pred             -CEEEE--EECCCCccceeEcCCC-CEEEEeCCCCe--EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC
Confidence             44444  3334566778888885 45544444444  5555554478888876432      236777888887

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.48  E-value=1.1e-10  Score=95.00  Aligned_cols=222  Identities=5%  Similarity=-0.023  Sum_probs=142.3

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      ......|+|...  .++++..          .++.|+.|+..+..  ....  .....+.+++++|+    ++++++ ..
T Consensus        14 ~~Egp~w~~~~~--~l~~~d~----------~~~~i~~~d~~~~~--~~~~--~~~~~~~~i~~~~d----G~l~v~-~~   72 (297)
T 3g4e_A           14 CGESPVWEEVSN--SLLFVDI----------PAKKVCRWDSFTKQ--VQRV--TMDAPVSSVALRQS----GGYVAT-IG   72 (297)
T ss_dssp             BEEEEEEETTTT--EEEEEET----------TTTEEEEEETTTCC--EEEE--ECSSCEEEEEEBTT----SSEEEE-ET
T ss_pred             cccCCeEECCCC--EEEEEEC----------CCCEEEEEECCCCc--EEEE--eCCCceEEEEECCC----CCEEEE-EC
Confidence            345788888652  5666665          68899999998764  3222  23467999999999    775554 44


Q ss_pred             CccEEEecCCCcc----------cCccEEEEEEcCCCCeEEEEecC---------CeEEEEEccc-cceeeeeeeecccc
Q 020107           91 DGGLLRDITGEKI----------SSSMCLCLEWNPSATSITVGLSD---------GSVSIVSVVE-SQLEVLQQWKAHEF  150 (331)
Q Consensus        91 dg~iiw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~-~~~~~~~~~~~~~~  150 (331)
                      ++..+++..+.+.          ....+..++++|+|++.++....         ..-.+|.+.. ++.   ..+.....
T Consensus        73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---~~~~~~~~  149 (297)
T 3g4e_A           73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV---KKYFDQVD  149 (297)
T ss_dssp             TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE---EEEEEEES
T ss_pred             CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE---EEEeeccc
Confidence            4443777765432          12457889999999966654321         2234444432 222   12222334


Q ss_pred             eeEEEeeCCCCCc-EEEEEcCCCeEEEEEcc--CCCce--eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEe
Q 020107          151 ELWATSFDVHQPH-MVYTGSDDCKFSGWDIR--ESPFK--LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDV  225 (331)
Q Consensus       151 ~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~--~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~  225 (331)
                      ....++|+| +++ ++++.+.++.|.+||+.  ++...  ..+.....+...+..+++.+ ++++.++...++.|..||.
T Consensus       150 ~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~  227 (297)
T 3g4e_A          150 ISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDP  227 (297)
T ss_dssp             BEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECT
T ss_pred             cccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcC
Confidence            567899999 555 55667778999999973  44321  22222122345688999999 8888888777889999999


Q ss_pred             cCCCCCceeeeeecCCceEEEEEC-CCCCCeEEEEE
Q 020107          226 RSISKPVNETSVCLGGGVWRIKHH-PFIPGLVLAAC  260 (331)
Q Consensus       226 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~  260 (331)
                      .++ +.+.. ...+...+++++|. |+++.+++++.
T Consensus       228 ~tG-~~~~~-i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          228 VTG-KRLQT-VKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TTC-CEEEE-EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCc-eEEEE-EECCCCCceEEEEeCCCCCEEEEEcC
Confidence            865 44443 23445679999998 77644444443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.48  E-value=6.6e-10  Score=90.33  Aligned_cols=219  Identities=8%  Similarity=-0.069  Sum_probs=140.1

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE  140 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  140 (331)
                      ..-..+..|+|+.   +.++++...++.+ .|+..+...    ....+.++++++++++++ +. ++.|.+||.++++..
T Consensus        12 ~~~~Egp~w~~~~---~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           12 CRCGESPVWEEVS---NSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CSBEEEEEEETTT---TEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEE
T ss_pred             CccccCCeEECCC---CEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEE
Confidence            3446688899963   5567777777788 888876543    256788999999999544 44 568999999887654


Q ss_pred             eeeeeec--ccceeEEEeeCCCCCcEEEEEcCC---------CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107          141 VLQQWKA--HEFELWATSFDVHQPHMVYTGSDD---------CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN  209 (331)
Q Consensus       141 ~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  209 (331)
                      .+.....  ....+..++++| +++++++....         ..-.+|.+........+..   +....+.++|+| +++
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~---~~~~pngi~~sp-dg~  161 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD---QVDISNGLDWSL-DHK  161 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE---EESBEEEEEECT-TSC
T ss_pred             EEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee---ccccccceEEcC-CCC
Confidence            4333221  234578999998 66766654221         2234554443222222222   344578999999 877


Q ss_pred             EE-EEEecCCeEEEEEec--CCCCCc-eeee---eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107          210 TL-LTGSYDEYLRVWDVR--SISKPV-NETS---VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA  282 (331)
Q Consensus       210 ~l-~~~~~d~~i~iwd~~--~~~~~~-~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (331)
                      .| ++.+.++.|..||+.  ++ ... ...+   ....+.+..+++.+++ .++++....+.+..  +...+++.+..+.
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~--~d~~tG~~~~~i~  237 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTG-QISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIR--LDPVTGKRLQTVK  237 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTC-CEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEE--ECTTTCCEEEEEE
T ss_pred             EEEEecCCCCcEEEEeccCCCC-cccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEE--EcCCCceEEEEEE
Confidence            55 555667899999984  32 211 1111   1234568899999996 55555544555444  4433367888888


Q ss_pred             cCCcceeeeeec-CCCC
Q 020107          283 KHGSLAYGADWQ-RGRS  298 (331)
Q Consensus       283 ~h~~~v~~~~~~-~~~~  298 (331)
                      .+...+++++|. |++.
T Consensus       238 ~p~~~~t~~~f~g~d~~  254 (297)
T 3g4e_A          238 LPVDKTTSCCFGGKNYS  254 (297)
T ss_dssp             CSSSBEEEEEEESGGGC
T ss_pred             CCCCCceEEEEeCCCCC
Confidence            777789999998 7763

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.47  E-value=1.9e-10  Score=95.51  Aligned_cols=278  Identities=11%  Similarity=0.018  Sum_probs=168.9

Q ss_pred             CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc----------CC
Q 020107           22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD----------AD   91 (331)
Q Consensus        22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~d   91 (331)
                      |+++.+.+.......     .++.|.++|..+.+ .+..+..+. .+ . ++++|+    ++.+++++          .+
T Consensus        42 pd~~~vyV~~~~~~~-----~~~~V~ViD~~t~~-v~~~I~vG~-~P-~-va~spD----G~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           42 PDARRVYVNDPAHFA-----AVTQQFVIDGEAGR-VIGMIDGGF-LP-N-PVVADD----GSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCTTEEEEEECGGGC-----SSEEEEEEETTTTE-EEEEEEECS-SC-E-EEECTT----SSCEEEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEEcCcccC-----CCCEEEEEECCCCe-EEEEEECCC-CC-c-EEECCC----CCEEEEEcccccccccCCCC
Confidence            555777666511000     16799999998876 444453332 23 3 999999    88887775          24


Q ss_pred             ccE-EEecCCCcccC-------------ccEEEEEEcCCCCeEEEEec--CCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           92 GGL-LRDITGEKISS-------------SMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        92 g~i-iw~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      +.+ +||..+.+...             .....+.|+|+|++++++..  ++.|.++|+.+++.  +..+....  . ..
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v--v~tI~v~g--~-~~  183 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF--KRMLDVPD--C-YH  183 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEECCS--E-EE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE--EEEEECCC--c-ce
Confidence            556 89988866421             12345899999999988864  68999999998865  55554211  1 12


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccC-CCceeeee-cccCCCcceE-EEEEecCCCCEEEEEecCCeEEEEEecCCCCCc
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRE-SPFKLAFQ-NSKIHKMGVC-CIASIPSDSNTLLTGSYDEYLRVWDVRSISKPV  232 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~-~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  232 (331)
                       ..|.....+++.+.||.+.+.++.. ++...... .+..-..++. ...|.+.++++++ .+.+|.|.+.|+......+
T Consensus       184 -~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v  261 (386)
T 3sjl_D          184 -IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF  261 (386)
T ss_dssp             -EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE
T ss_pred             -eecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee
Confidence             2243556777888899999999876 44321111 1000112221 2355432665544 5558999999997642211


Q ss_pred             eeeee----------ecCCceEEEEECCCCCCeEEEEEec-------CcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107          233 NETSV----------CLGGGVWRIKHHPFIPGLVLAACMH-------NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR  295 (331)
Q Consensus       233 ~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  295 (331)
                      .....          -..+....++++|++..++++....       ..-.+|-+...+.+.+.++.- ...++++++++
T Consensus       262 ~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~  340 (386)
T 3sjl_D          262 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQ  340 (386)
T ss_dssp             CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECS
T ss_pred             ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECC
Confidence            11010          0122344577788874444444321       123355555554677777763 23688999999


Q ss_pred             CCCcccccccCcEEEE-eecCCCeEEEEcCCCccc
Q 020107          296 GRSSLEGKRKNSLVAT-CSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       296 ~~~~~~~~~~~~~l~s-~~~~d~~i~iW~~~~~~~  329 (331)
                      ++.        .+|++ .. .++.|.++|..++..
T Consensus       341 D~~--------~~ly~tn~-~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          341 DEK--------PLLYALST-GDKTLYIHDAESGEE  366 (386)
T ss_dssp             SSS--------CEEEEEET-TTTEEEEEETTTCCE
T ss_pred             CCC--------eEEEEEcC-CCCeEEEEECCCCcE
Confidence            983        35554 45 699999999988754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.47  E-value=8.1e-11  Score=100.00  Aligned_cols=232  Identities=10%  Similarity=-0.057  Sum_probs=149.8

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+..|++.|.+   +++++..          .++.|++||.++..  +..+... ..... ++|+|+    ++.|+++..
T Consensus       132 ~P~~la~d~~g---~lyv~d~----------~~~~I~~id~~~g~--~~~~~~~-~~~~~-ia~~~~----g~~l~~~d~  190 (409)
T 3hrp_A          132 YMWGIAAVGNN---TVLAYQR----------DDPRVRLISVDDNK--VTTVHPG-FKGGK-PAVTKD----KQRVYSIGW  190 (409)
T ss_dssp             CEEEEEECSTT---EEEEEET----------TTTEEEEEETTTTE--EEEEEET-CCBCB-CEECTT----SSEEEEEBS
T ss_pred             CceEEEEeCCC---CEEEEec----------CCCcEEEEECCCCE--EEEeecc-CCCCc-eeEecC----CCcEEEEec
Confidence            45567776554   7666665          57899999998764  4444333 22334 999999    888888888


Q ss_pred             Cc--cE-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeee--eeccccee--E
Q 020107           91 DG--GL-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQ--WKAHEFEL--W  153 (331)
Q Consensus        91 dg--~i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~v--~  153 (331)
                      ++  .+ .++......          ....+.+++++|++..|+++..++.|+.||..++....+..  ..+....-  .
T Consensus       191 ~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~  270 (409)
T 3hrp_A          191 EGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP  270 (409)
T ss_dssp             STTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred             CCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence            76  45 555443211          23456789999966666667778999999998765322211  11122222  2


Q ss_pred             EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc---C---------CCcceEEEEEecCCCCEEEEEe-cCCeE
Q 020107          154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK---I---------HKMGVCCIASIPSDSNTLLTGS-YDEYL  220 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~---------~~~~v~~~~~~~~~~~~l~~~~-~d~~i  220 (331)
                      .++|+|.++.++++-..++.|+.||....  ...+....   +         .-.....++++| +++++++-. .++.|
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I  347 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCL  347 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEE
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEE
Confidence            89999856777777788899999997643  22222200   0         013478999999 888888877 88999


Q ss_pred             EEEEecCCCCCceeeeeec---------------CCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          221 RVWDVRSISKPVNETSVCL---------------GGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                      +.||+.++ . +.. ...+               -.....++++|++ .++++-..++.|+.+.+
T Consensus       348 ~~~~~~~G-~-v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          348 RKLDILDG-Y-VST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEETTTT-E-EEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEE
T ss_pred             EEEECCCC-E-EEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEe
Confidence            99997654 2 222 2232               2357899999984 55555545556555443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.46  E-value=1.1e-10  Score=107.22  Aligned_cols=239  Identities=12%  Similarity=0.015  Sum_probs=144.6

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+..++|+|++   ++||.+.....     .+...|++||+.+++ .+..  ..+...+..++|+|+    . .|+.++.
T Consensus       164 ~~~~~~~SPDG---~~la~~~~~~G-----~e~~~i~v~dl~tg~-~~~~--~~~~~~~~~~~wspD----~-~l~~~~~  227 (741)
T 1yr2_A          164 ALDAWAASDDG---RLLAYSVQDGG-----SDWRTVKFVGVADGK-PLAD--ELKWVKFSGLAWLGN----D-ALLYSRF  227 (741)
T ss_dssp             EEEEEEECTTS---SEEEEEEEETT-----CSEEEEEEEETTTCC-EEEE--EEEEEESCCCEESTT----S-EEEEEEC
T ss_pred             EEEeEEECCCC---CEEEEEEcCCC-----CceEEEEEEECCCCC-CCCc--cCCCceeccEEEECC----C-EEEEEEe
Confidence            34567777766   88888862100     012469999999876 2221  112222468899998    3 4444444


Q ss_pred             Ccc--------------E-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCC-----eEEEEEcccccee
Q 020107           91 DGG--------------L-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDG-----SVSIVSVVESQLE  140 (331)
Q Consensus        91 dg~--------------i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  140 (331)
                      ++.              + +|++.+...          +...+..+.|+|+|++|+..+.++     .|++||+.++...
T Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~  307 (741)
T 1yr2_A          228 AEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG  307 (741)
T ss_dssp             CCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC
T ss_pred             cCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc
Confidence            432              4 788765542          122478899999999988877544     8999999876211


Q ss_pred             eeeeeecccceeEEEeeCCCCCcEEEEEcC----CCeEEEEEccCCC-ceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107          141 VLQQWKAHEFELWATSFDVHQPHMVYTGSD----DCKFSGWDIRESP-FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      ....+..+...+....+ | +++.|+..+.    ++.|.+||+.++. ....+.  +.+...+..+.+.  ++.++++..
T Consensus       308 ~~~~l~~~~~~~~~~~~-~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~--~~~~~~l~~~~~~--~~~lv~~~~  381 (741)
T 1yr2_A          308 PVTALIPDLKAQWDFVD-G-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV--PESKDNLESVGIA--GNRLFASYI  381 (741)
T ss_dssp             CCEEEECSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE--CCCSSEEEEEEEE--BTEEEEEEE
T ss_pred             ccEEecCCCCceEEEEe-c-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe--cCCCCeEEEEEEE--CCEEEEEEE
Confidence            02334444444444433 6 5565655554    4569999998752 222222  2255557777776  467888888


Q ss_pred             cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec---CcEEEEEEc
Q 020107          216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH---NGFAVVKVG  271 (331)
Q Consensus       216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  271 (331)
                      .|+..+||.+.........+.....+.+..+.++|+++.++++..+.   ..+..|++.
T Consensus       382 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          382 HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             ETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred             ECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            99988888776322333331223467789999999875555555443   344555543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.45  E-value=1.8e-10  Score=97.86  Aligned_cols=233  Identities=9%  Similarity=-0.008  Sum_probs=151.9

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEecCC--eEEEEEccccce
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLSDG--SVSIVSVVESQL  139 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~  139 (331)
                      ....|+|+|+    ++++++...++.+ .|+..+....     ..... ++|+++++.|+++..++  .|.+++...+..
T Consensus       132 ~P~~la~d~~----g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          132 YMWGIAAVGN----NTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CEEEEEECST----TEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CceEEEEeCC----CCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            5789999998    7777777777788 8888765431     12223 89999999999888866  788898876542


Q ss_pred             e-eeeeeec-ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec--ccCCCcce-E-EEEEecCCCCEEEE
Q 020107          140 E-VLQQWKA-HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN--SKIHKMGV-C-CIASIPSDSNTLLT  213 (331)
Q Consensus       140 ~-~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~v-~-~~~~~~~~~~~l~~  213 (331)
                      . .+..+.. ....+.+++++|.++. |+.+..++.|+.||..++.. ..+..  ..++...- . .++|+|.++.++++
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence            1 1111112 3456788999984444 44467789999999987653 23311  01112222 3 89999944666666


Q ss_pred             EecCCeEEEEEecCCCCCceeeeeecC---------------CceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccce
Q 020107          214 GSYDEYLRVWDVRSISKPVNETSVCLG---------------GGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEV  277 (331)
Q Consensus       214 ~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  277 (331)
                      -..++.|+.||....   +.. ...+.               .....++++|++ .++++-. ..+.++.|++..  +. 
T Consensus       285 d~~~~~I~~~~~~g~---~~~-~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~--G~-  356 (409)
T 3hrp_A          285 DQNLSSVYKITPDGE---CEW-FCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILD--GY-  356 (409)
T ss_dssp             ETTTTEEEEECTTCC---EEE-EEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTT--TE-
T ss_pred             eCCCCEEEEEecCCC---EEE-EEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCC--CE-
Confidence            667889999987642   222 12221               347899999996 4555554 556655555433  33 


Q ss_pred             eEEeecC---------------CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          278 LETYAKH---------------GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       278 ~~~~~~h---------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      +.++.++               -....++++++++         .++++-. .+++|+.++++
T Consensus       357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g---------~lyVad~-~n~~Ir~i~~e  409 (409)
T 3hrp_A          357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG---------GYWIAEA-WGKAIRKYAVE  409 (409)
T ss_dssp             EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS---------EEEEEES-TTCEEEEEEEC
T ss_pred             EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC---------CEEEEEC-CCCeEEEEEeC
Confidence            4444443               2357889999987         6777777 78899888753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.45  E-value=4.7e-10  Score=91.07  Aligned_cols=232  Identities=9%  Similarity=-0.005  Sum_probs=157.3

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES  137 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  137 (331)
                      ...+.++.+.++    +.+.++...++.+ .++.. .+.       ....+.++++.++++..++...++.|..+|.. +
T Consensus        19 ~~~p~~i~~d~~----g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           19 DSGPYGITSSED----GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             TCCEEEEEECTT----SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcceeeECCC----CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            346889999998    7888877777777 77766 322       12568899999999877776668899999987 5


Q ss_pred             ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107          138 QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD  217 (331)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  217 (331)
                      +.. ..........+..+++.+ ++.++++...++.|..+|.. ++.. .+.. +.....+..+++.+ ++++.++...+
T Consensus        93 ~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~-~~~~~~~~~i~~d~-~g~l~v~~~~~  166 (300)
T 2qc5_A           93 GFT-EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIY-EYDL-PNKGSYPAFITLGS-DNALWFTENQN  166 (300)
T ss_dssp             CEE-EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEE-EEEC-SSTTCCEEEEEECT-TSSEEEEETTT
T ss_pred             CeE-EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEE-EccC-CCCCCCceeEEECC-CCCEEEEecCC
Confidence            432 122222345688999997 77888777778899999987 5432 3322 22456789999999 88877666667


Q ss_pred             CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE-EeecCCcceeeeeecCC
Q 020107          218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE-TYAKHGSLAYGADWQRG  296 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~  296 (331)
                      +.|..+|. ++ .............+..+++.+++ .++++....+.+..++.  . ++... ....+...+.++++.++
T Consensus       167 ~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~--~-g~~~~~~~~~~~~~~~~i~~d~~  240 (300)
T 2qc5_A          167 NSIGRITN-TG-KLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT--T-GEISEYDIPTPNARPHAITAGKN  240 (300)
T ss_dssp             TEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT--T-CCEEEEECSSTTCCEEEEEECST
T ss_pred             CeEEEECC-CC-cEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC--C-CcEEEEECCCCCCCceEEEECCC
Confidence            88999998 32 22221111234568899999985 55555444556555554  2 33322 23334567889999999


Q ss_pred             CCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          297 RSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      +         ++.++.. .++.|..|+..
T Consensus       241 g---------~l~v~~~-~~~~i~~~~~~  259 (300)
T 2qc5_A          241 S---------EIWFTEW-GANQIGRITND  259 (300)
T ss_dssp             T---------CEEEEET-TTTEEEEECTT
T ss_pred             C---------CEEEecc-CCCeEEEECCC
Confidence            8         5666665 57899999984

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.44  E-value=9.1e-11  Score=99.10  Aligned_cols=256  Identities=13%  Similarity=0.028  Sum_probs=162.8

Q ss_pred             CcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC----------CccE-EEecCCCcccC-------
Q 020107           44 GSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA----------DGGL-LRDITGEKISS-------  105 (331)
Q Consensus        44 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------dg~i-iw~~~~~~~~~-------  105 (331)
                      +.|.++|..+.+ .+..+..+. .+  .+.++|+    ++.|+++..          ++.+ ++|..+.+...       
T Consensus        99 ~~VsVID~~t~~-vv~~I~vG~-~P--gia~SpD----gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~  170 (426)
T 3c75_H           99 TQQFVIDGSTGR-ILGMTDGGF-LP--HPVAAED----GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA  170 (426)
T ss_dssp             EEEEEEETTTTE-EEEEEEECS-SC--EEEECTT----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             CeEEEEECCCCE-EEEEEECCC-CC--ceEECCC----CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc
Confidence            799999999876 444443332 33  8999999    888887763          4566 88887765421       


Q ss_pred             ------ccEEEEEEcCCCCeEEEEec--CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107          106 ------SMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW  177 (331)
Q Consensus       106 ------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (331)
                            .....+.|+|++++++++..  ++.|.++|+.+.+.  +..+.... .   ....|.....+++.+.||.+.+.
T Consensus       171 ~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv--v~~I~v~g-~---~~~~p~g~~~~v~~~~dG~~~~V  244 (426)
T 3c75_H          171 PRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF--DRMLDVPD-C---YHIFPASPTVFYMNCRDGSLARV  244 (426)
T ss_dssp             CCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEECCS-E---EEEEEEETTEEEEEETTSSEEEE
T ss_pred             cccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE--EEEEEcCC-c---eeeccCCCcEEEEEcCCCCEEEE
Confidence                  12346789999999999874  58899999998765  44554221 1   22334344666777788888888


Q ss_pred             EccCCCcee----eeecccCCCcce-EEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee----------ecCCc
Q 020107          178 DIRESPFKL----AFQNSKIHKMGV-CCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV----------CLGGG  242 (331)
Q Consensus       178 d~~~~~~~~----~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~  242 (331)
                      ++.+++...    .+..   ...++ ..+.+.+ ++..++.....+.+.+.|.......+.....          .....
T Consensus       245 ~~~~~~v~~~~~~~~~v---~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g  320 (426)
T 3c75_H          245 DFADGETKVTNTEVFHT---EDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGG  320 (426)
T ss_dssp             ECCTTCCEEEECCCCSC---TTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECS
T ss_pred             ECCCCcEEEEeeeeecc---CCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCC
Confidence            885554331    1221   11121 2356788 6666666677899999998653211110000          01122


Q ss_pred             eEEEEECCCCCCeEEEEEe---------cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCc-EEEEe
Q 020107          243 VWRIKHHPFIPGLVLAACM---------HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNS-LVATC  312 (331)
Q Consensus       243 v~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~  312 (331)
                      ...++++|++..++++...         .+.+.+++...  .+.+.++.. .....++.|+|++         + ++++.
T Consensus       321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T--~kvv~~I~v-g~~P~gia~spDg---------~~~lyv~  388 (426)
T 3c75_H          321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET--GERINKIEL-GHEIDSINVSQDA---------EPLLYAL  388 (426)
T ss_dssp             SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT--CCEEEEEEE-EEEECEEEECCSS---------SCEEEEE
T ss_pred             ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC--CeEEEEEEC-CCCcCeEEEccCC---------CEEEEEE
Confidence            2347899998455554432         23556666555  577777753 2357899999998         5 66666


Q ss_pred             ecCCCeEEEEcCCCccc
Q 020107          313 SFYDRLLRIWMPESDCL  329 (331)
Q Consensus       313 ~~~d~~i~iW~~~~~~~  329 (331)
                      ...++.|.++|+.++..
T Consensus       389 n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          389 SAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             ETTTTEEEEEETTTCCE
T ss_pred             cCCCCeEEEEECCCCCE
Confidence            52589999999988753

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.41  E-value=3e-10  Score=103.33  Aligned_cols=243  Identities=14%  Similarity=0.066  Sum_probs=148.1

Q ss_pred             ecCcEeEEEEcCCCCCCCCeEEEEc-CCc----cE-EEecCCCcccCc---c--EEEEEEcCCCCeEEEEecCC------
Q 020107           65 DTAGIFDIKWSPVGGNAGPFLAQAD-ADG----GL-LRDITGEKISSS---M--CLCLEWNPSATSITVGLSDG------  127 (331)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~l~~~~-~dg----~i-iw~~~~~~~~~~---~--v~~~~~~~~~~~l~~~~~dg------  127 (331)
                      |...+..++|||+    +++||-+. ..|    .+ +|++.+++....   .  ...++|+ |++.|+.+..+.      
T Consensus       127 ~~~~l~~~~~SpD----g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          127 GTTALDQLSFSRD----GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSEL  201 (693)
T ss_dssp             SCCEEEEEEECTT----SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred             CcEEEEEEEECCC----CCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccc
Confidence            4456889999999    88777433 233    34 999988775321   1  2467899 999999888774      


Q ss_pred             -------eEEEEEccccceeeeeee--ec-ccceeEEEeeCCCCCcEEE-EEc---CCCeEEEEEccCCC-ceeeeeccc
Q 020107          128 -------SVSIVSVVESQLEVLQQW--KA-HEFELWATSFDVHQPHMVY-TGS---DDCKFSGWDIRESP-FKLAFQNSK  192 (331)
Q Consensus       128 -------~i~i~d~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~l~-~~~---~dg~i~i~d~~~~~-~~~~~~~~~  192 (331)
                             .|++|++.++.......+  .. +...+..+.|+| ++++|+ +..   ....|+++|+.++. ....+..  
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~--  278 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG--  278 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC--
T ss_pred             cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC--
Confidence                   399999987543222223  33 344577899999 666554 333   23589999998764 2334443  


Q ss_pred             CCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107          193 IHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK  269 (331)
Q Consensus       193 ~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (331)
                       +....... +++..+.++++...+   +.|..+|+.+....-.+.+..+...+.  .|++++ ..++....+++...+.
T Consensus       279 -~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g-~~lv~~~~~~g~~~l~  353 (693)
T 3iuj_A          279 -DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGS-GYLFAEYMVDATARVE  353 (693)
T ss_dssp             -SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEET-TEEEEEEEETTEEEEE
T ss_pred             -CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEEC-CEEEEEEEECCeeEEE
Confidence             45555554 555244444444443   679999998753211122455665555  888887 5555555555432223


Q ss_pred             EcCcccceeEEee-cCCcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCcc
Q 020107          270 VGGEKAEVLETYA-KHGSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDC  328 (331)
Q Consensus       270 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~  328 (331)
                      +++..+.....+. ...+.+..+.+++++.        .++++.++  .-++|+.||++++.
T Consensus       354 ~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~--------~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          354 QFDYEGKRVREVALPGLGSVSGFNGKHDDP--------ALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EECTTSCEEEEECCSSSSEEEECCCCTTCS--------CEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEECCCCeeEEeecCCCceEEeeecCCCCC--------EEEEEecCCCCCCEEEEEECCCCe
Confidence            3332244444444 3455677888888874        45555441  12899999997764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.38  E-value=3.1e-09  Score=87.54  Aligned_cols=213  Identities=8%  Similarity=-0.062  Sum_probs=135.7

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL  142 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  142 (331)
                      -.....|+|++   +.++++...++.+ .|+..+.+.    ....+.++.|+++++++++. .+ .|.+||..+++...+
T Consensus        50 ~~egp~~~~~~---~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           50 LGEGPTFDPAS---GTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH  124 (326)
T ss_dssp             BEEEEEEETTT---TEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred             CCcCCeEeCCC---CEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence            35678899973   4566666677777 888776543    24578899999998876654 44 499999987765333


Q ss_pred             eeeec--ccceeEEEeeCCCCCcEEEEEcC------CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107          143 QQWKA--HEFELWATSFDVHQPHMVYTGSD------DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       143 ~~~~~--~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      .....  ....+.+++++| +++++++...      .+.|..+|  +++ ...+..   +......++|+| +++.++.+
T Consensus       125 ~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~---~~~~~~~i~~s~-dg~~lyv~  196 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFA---DISIPNSICFSP-DGTTGYFV  196 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEE---EESSEEEEEECT-TSCEEEEE
T ss_pred             eeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeC---CCcccCCeEEcC-CCCEEEEE
Confidence            22211  124688999998 6676655432      24555555  343 222222   234578899999 88766544


Q ss_pred             -ecCCeEEEEEec--CC-CCCceeeee---ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcc
Q 020107          215 -SYDEYLRVWDVR--SI-SKPVNETSV---CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL  287 (331)
Q Consensus       215 -~~d~~i~iwd~~--~~-~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  287 (331)
                       +.++.|.+||+.  ++ .......+.   .....+..+++.+++ .++++....+++..|+.   .++.+..+..+...
T Consensus       197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~---~g~~~~~i~~~~~~  272 (326)
T 2ghs_A          197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT---DGNHIARYEVPGKQ  272 (326)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT---TCCEEEEEECSCSB
T ss_pred             ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECC---CCCEEEEEECCCCC
Confidence             457899999986  32 111111111   134567889999986 55555544566555543   35667777777778


Q ss_pred             eeeeeec-CCC
Q 020107          288 AYGADWQ-RGR  297 (331)
Q Consensus       288 v~~~~~~-~~~  297 (331)
                      +++++|. +++
T Consensus       273 ~~~~af~g~d~  283 (326)
T 2ghs_A          273 TTCPAFIGPDA  283 (326)
T ss_dssp             EEEEEEESTTS
T ss_pred             cEEEEEecCCC
Confidence            9999998 776

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.37  E-value=2.3e-09  Score=88.27  Aligned_cols=220  Identities=11%  Similarity=0.019  Sum_probs=139.9

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD   91 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   91 (331)
                      ...+.|+|...  .+++++.          .++.|..|+.+++.  ...+  .....+.++.|+|+    ++++++. .+
T Consensus        51 ~egp~~~~~~~--~l~~~d~----------~~~~i~~~d~~~~~--~~~~--~~~~~v~~i~~~~d----g~l~v~~-~~  109 (326)
T 2ghs_A           51 GEGPTFDPASG--TAWWFNI----------LERELHELHLASGR--KTVH--ALPFMGSALAKISD----SKQLIAS-DD  109 (326)
T ss_dssp             EEEEEEETTTT--EEEEEEG----------GGTEEEEEETTTTE--EEEE--ECSSCEEEEEEEET----TEEEEEE-TT
T ss_pred             CcCCeEeCCCC--EEEEEEC----------CCCEEEEEECCCCc--EEEE--ECCCcceEEEEeCC----CeEEEEE-CC
Confidence            45778888642  5666665          57899999988764  3322  23467999999999    7776654 55


Q ss_pred             ccEEEecCCCccc----------CccEEEEEEcCCCCeEEEEec------CCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           92 GGLLRDITGEKIS----------SSMCLCLEWNPSATSITVGLS------DGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        92 g~iiw~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      +..+|+..+++..          ...+.++.++|+|++.++...      .+.|..++  +++..   .+..+......+
T Consensus       110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~---~~~~~~~~~~~i  184 (326)
T 2ghs_A          110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT---KLFADISIPNSI  184 (326)
T ss_dssp             EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE---EEEEEESSEEEE
T ss_pred             CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE---EeeCCCcccCCe
Confidence            5337777654421          235789999999987665432      24565565  44332   222233356789


Q ss_pred             eeCCCCCcE-EEEEcCCCeEEEEEcc--CC-Cc--eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107          156 SFDVHQPHM-VYTGSDDCKFSGWDIR--ES-PF--KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       156 ~~~~~~~~~-l~~~~~dg~i~i~d~~--~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      +|+| +++. +++.+.++.|.+||+.  ++ ..  ...+.........+..+++.+ ++++.++...++.|..||.. + 
T Consensus       185 ~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~~-g-  260 (326)
T 2ghs_A          185 CFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-G-  260 (326)
T ss_dssp             EECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-C-
T ss_pred             EEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECCC-C-
Confidence            9998 5554 4555667899999986  44 32  122222122345678899998 88877776667889999983 2 


Q ss_pred             CCceeeeeecCCceEEEEEC-CCCCCeEEEEEecC
Q 020107          230 KPVNETSVCLGGGVWRIKHH-PFIPGLVLAACMHN  263 (331)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~  263 (331)
                      +.+.. .......+++++|. |++ +.++++...+
T Consensus       261 ~~~~~-i~~~~~~~~~~af~g~d~-~~L~vt~~~~  293 (326)
T 2ghs_A          261 NHIAR-YEVPGKQTTCPAFIGPDA-SRLLVTSARE  293 (326)
T ss_dssp             CEEEE-EECSCSBEEEEEEESTTS-CEEEEEEBCT
T ss_pred             CEEEE-EECCCCCcEEEEEecCCC-CEEEEEecCC
Confidence            33333 23445579999998 776 4444444433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.32  E-value=4.4e-09  Score=85.78  Aligned_cols=231  Identities=10%  Similarity=-0.000  Sum_probs=146.7

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCC-eEEEEcCCccE-EEecCCCc----ccCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGP-FLAQADADGGL-LRDITGEK----ISSSMCLCLEWNPSATSITVGLSDGSVSI  131 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i-iw~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  131 (331)
                      ++.+.. .........|+|+    ++ ++++...++.+ .|+.....    .+...+..++++++|+++++...++.|.+
T Consensus        37 ~~~l~~-~~~~~egp~~~~~----g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           37 LLTLYD-QATWSEGPAWWEA----QRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR  111 (305)
T ss_dssp             CEEEEC-CCSSEEEEEEEGG----GTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             eEEEec-CCcCccCCeEeCC----CCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence            444433 3445788999999    66 67777777888 78764321    13456789999999997666666788999


Q ss_pred             EEccccceeeeeeee-c-ccceeEEEeeCCCCCcEEEE----EcC-------------CCeEEEEEccCCCceeeeeccc
Q 020107          132 VSVVESQLEVLQQWK-A-HEFELWATSFDVHQPHMVYT----GSD-------------DCKFSGWDIRESPFKLAFQNSK  192 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~  192 (331)
                      |+.. ++...+.... + ....+..++++| ++.++++    |..             .+.|..+|..+++..... .  
T Consensus       112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~--  186 (305)
T 3dr2_A          112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D--  186 (305)
T ss_dssp             ECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E--
T ss_pred             ECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c--
Confidence            9986 5432222111 1 113467899998 7777776    332             356778887666643332 2  


Q ss_pred             CCCcceEEEEEecCCCCEEEEEecC------CeEEEEEecCCCCCcee---eeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107          193 IHKMGVCCIASIPSDSNTLLTGSYD------EYLRVWDVRSISKPVNE---TSVCLGGGVWRIKHHPFIPGLVLAACMHN  263 (331)
Q Consensus       193 ~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  263 (331)
                        ......++|+| +++.|+.+...      +.|.+||+....  +..   ......+....+++.+++ . +.++. .+
T Consensus       187 --~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G-~-lwv~~-~~  258 (305)
T 3dr2_A          187 --LDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGG-W-LWSSS-GT  258 (305)
T ss_dssp             --ESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTS-C-EEECC-SS
T ss_pred             --CCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCC-C-EEEec-CC
Confidence              33567899999 88877777655      789999997642  211   011123445678999986 4 44443 45


Q ss_pred             cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107          264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR  320 (331)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~  320 (331)
                      ++.+|+.   .++.+..+..+. .+..++|.+++         +.|..++ .++..+
T Consensus       259 gv~~~~~---~g~~~~~~~~~~-~~~~~~f~~d~---------~~L~it~-~~~l~~  301 (305)
T 3dr2_A          259 GVCVFDS---DGQLLGHIPTPG-TASNCTFDQAQ---------QRLFITG-GPCLWM  301 (305)
T ss_dssp             EEEEECT---TSCEEEEEECSS-CCCEEEECTTS---------CEEEEEE-TTEEEE
T ss_pred             cEEEECC---CCCEEEEEECCC-ceeEEEEeCCC---------CEEEEEc-CCeEEE
Confidence            6555443   366777776554 58899999887         4666665 454333

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.30  E-value=2.7e-09  Score=97.05  Aligned_cols=224  Identities=13%  Similarity=0.070  Sum_probs=137.2

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD   91 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   91 (331)
                      +..++|+|++   ++||.+....     ++....|++||+.+++ .+.....  ......++|+ +    ++.|+.++.+
T Consensus       131 l~~~~~SpDg---~~lAy~~~~~-----G~~~~~i~v~dl~tg~-~~~~~~~--~~k~~~~~Ws-D----g~~l~y~~~~  194 (693)
T 3iuj_A          131 LDQLSFSRDG---RILAYSLSLA-----GSDWREIHLMDVESKQ-PLETPLK--DVKFSGISWL-G----NEGFFYSSYD  194 (693)
T ss_dssp             EEEEEECTTS---SEEEEEEECS-----SCCEEEEEEEETTTCS-EEEEEEE--EEESCCCEEE-T----TTEEEEEESS
T ss_pred             EEEEEECCCC---CEEEEEEecC-----CCceEEEEEEECCCCC-CCccccC--CceeccEEEe-C----CCEEEEEEec
Confidence            4456677665   8888765211     1134689999999876 2222111  1113578999 8    7888887776


Q ss_pred             cc-------------E-EEecCCCcc-----------cCccEEEEEEcCCCCeEEEEec----CCeEEEEEccccceeee
Q 020107           92 GG-------------L-LRDITGEKI-----------SSSMCLCLEWNPSATSITVGLS----DGSVSIVSVVESQLEVL  142 (331)
Q Consensus        92 g~-------------i-iw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~  142 (331)
                      ..             + +|++.+...           +......+.|+|++++|+....    ...|+++|+.++.. ..
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~-~~  273 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA-PL  273 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-CC
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-ce
Confidence            43             3 777766432           1224678999999998765443    35899999977632 23


Q ss_pred             eeeecccceeEEEeeCCCCCcEEEEEcCC---CeEEEEEccCCCc--eeeeecccCCCcceEEEEEecCCCCEEEEEec-
Q 020107          143 QQWKAHEFELWATSFDVHQPHMVYTGSDD---CKFSGWDIRESPF--KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-  216 (331)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-  216 (331)
                      ..+..+....... |++.++.+++....+   +.|..+|+.++..  ...+..   |...+.  .|++ +++.|+.... 
T Consensus       274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~--~~s~-~g~~lv~~~~~  346 (693)
T 3iuj_A          274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ERQQVL--TVHS-GSGYLFAEYMV  346 (693)
T ss_dssp             EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCSSCE--EEEE-ETTEEEEEEEE
T ss_pred             EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CCCCEE--EEEE-ECCEEEEEEEE
Confidence            3444455444444 555455566665544   6899999988754  133333   455554  8888 6766666554 


Q ss_pred             CC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107          217 DE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       217 d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  261 (331)
                      ++  .|++||+...  ....+.....+.+..+.++|+++.+++...+
T Consensus       347 ~g~~~l~~~d~~g~--~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss  391 (693)
T 3iuj_A          347 DATARVEQFDYEGK--RVREVALPGLGSVSGFNGKHDDPALYFGFEN  391 (693)
T ss_dssp             TTEEEEEEECTTSC--EEEEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred             CCeeEEEEEECCCC--eeEEeecCCCceEEeeecCCCCCEEEEEecC
Confidence            44  6888888742  2333223445667788888887555555443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=2.5e-09  Score=88.78  Aligned_cols=241  Identities=10%  Similarity=0.041  Sum_probs=146.2

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc--CCccE-EEecCCCcc------------cCccEEEEEEcCCCCeEEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD--ADGGL-LRDITGEKI------------SSSMCLCLEWNPSATSITV  122 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--~dg~i-iw~~~~~~~------------~~~~v~~~~~~~~~~~l~~  122 (331)
                      ++.+...+ ..+..++++|+    ++++++..  .++.. +|.+..++.            +-..+..+++++++++.++
T Consensus         9 ~~~v~~~~-~~p~~va~~~~----g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~   83 (343)
T 2qe8_A            9 LEVVAELS-LAPGNITLTPD----GRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWML   83 (343)
T ss_dssp             CEEEEEES-SCEEEEEECTT----SCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEE
T ss_pred             eEEEEEcC-CCcceEEECCC----CCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEE
Confidence            44444434 67899999999    88888864  23323 554432211            2356889999999876665


Q ss_pred             Eec-----CCeEEEEEccccceeeeeeeec------ccceeEEEeeCCCCCcEEEEEc---CCCeEEEEEccCCCceeee
Q 020107          123 GLS-----DGSVSIVSVVESQLEVLQQWKA------HEFELWATSFDVHQPHMVYTGS---DDCKFSGWDIRESPFKLAF  188 (331)
Q Consensus       123 ~~~-----dg~i~i~d~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~  188 (331)
                      -..     ++.|.+||+.+++.  +..+..      +...+..++++|.++..+++-.   .++.|.+||+.+++....+
T Consensus        84 D~g~~~~~~~~i~~~d~~tg~~--~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~  161 (343)
T 2qe8_A           84 DNGNQSKSVPKLVAWDTLNNQL--SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL  161 (343)
T ss_dssp             ECHHHHTSCCEEEEEETTTTEE--EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred             cCCCCcCCCCeEEEEECCCCeE--EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence            444     57899999988764  333321      2234688999874455556655   6789999999877643332


Q ss_pred             ecc----c--------C--------------CCcceEEEEEecCCCCEEEEEecCC-eEEEEEecCCCC-C------cee
Q 020107          189 QNS----K--------I--------------HKMGVCCIASIPSDSNTLLTGSYDE-YLRVWDVRSISK-P------VNE  234 (331)
Q Consensus       189 ~~~----~--------~--------------~~~~v~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~-~------~~~  234 (331)
                      ...    +        +              -...+..|+++| +++.|+.+..++ .+..++...... .      ...
T Consensus       162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (343)
T 2qe8_A          162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK  240 (343)
T ss_dssp             TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred             cCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence            110    0        0              012468899999 888888887666 454444321100 0      000


Q ss_pred             -eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEe
Q 020107          235 -TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATC  312 (331)
Q Consensus       235 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  312 (331)
                       ....+.+....+++++++ .++++....+.+.+|+...  ++....... +....+++++.+++         .++++.
T Consensus       241 ~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~--G~~~~~~~~~~~~~p~~va~~~~g---------~l~v~~  308 (343)
T 2qe8_A          241 IERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSAD--RAYKLLVTDEKLSWTDSFNFGSDG---------YLYFDC  308 (343)
T ss_dssp             CEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTT--TEEEEEEECGGGSCEEEEEECTTS---------CEEEEE
T ss_pred             eEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCC--CCEEEEEECCceecCCeeEECCCC---------cEEEEe
Confidence             012344566789999986 6666666667777777522  332222222 24568899999987         566666


Q ss_pred             ecCCCeE
Q 020107          313 SFYDRLL  319 (331)
Q Consensus       313 ~~~d~~i  319 (331)
                      + ..+.+
T Consensus       309 ~-~~~~~  314 (343)
T 2qe8_A          309 N-QLHHS  314 (343)
T ss_dssp             C-CGGGS
T ss_pred             C-ccccc
Confidence            5 34433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.27  E-value=4.6e-09  Score=85.66  Aligned_cols=216  Identities=9%  Similarity=0.001  Sum_probs=135.9

Q ss_pred             ceeEeeecCCCCCc-EEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           12 ADAVEFCPQDSYHH-VLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        12 ~~~v~~~~~~~~~~-~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .....|.|.+   + +++++.          .++.|..|+... .  ...+ ..+...+..+++.++    ++++++...
T Consensus        47 ~egp~~~~~g---~~l~~~d~----------~~~~i~~~~~~g-~--~~~~-~~~~~~~~gl~~d~d----G~l~v~~~~  105 (305)
T 3dr2_A           47 SEGPAWWEAQ---RTLVWSDL----------VGRRVLGWREDG-T--VDVL-LDATAFTNGNAVDAQ----QRLVHCEHG  105 (305)
T ss_dssp             EEEEEEEGGG---TEEEEEET----------TTTEEEEEETTS-C--EEEE-EESCSCEEEEEECTT----SCEEEEETT
T ss_pred             ccCCeEeCCC---CEEEEEEC----------CCCEEEEEeCCC-C--EEEE-eCCCCccceeeECCC----CCEEEEECC
Confidence            4567888766   5 666665          688999998743 2  3333 445667899999999    887776666


Q ss_pred             CccE-EEecCCCcc----------cCccEEEEEEcCCCCeEEE----Eec-------------CCeEEEEEccccceeee
Q 020107           91 DGGL-LRDITGEKI----------SSSMCLCLEWNPSATSITV----GLS-------------DGSVSIVSVVESQLEVL  142 (331)
Q Consensus        91 dg~i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~  142 (331)
                      ++.+ .++.. ++.          ....+..+.++++|+..++    |..             .+.|..+|..+++...+
T Consensus       106 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~  184 (305)
T 3dr2_A          106 RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM  184 (305)
T ss_dssp             TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred             CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence            5666 77654 221          1123567999999997776    332             35678888766654332


Q ss_pred             eeeecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEEccCCCc--eeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107          143 QQWKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWDIRESPF--KLAFQNSKIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      .    .......++|+| +++.|+.+...      +.|.+||+.....  ...+..  .....+..+++.+ ++++.++ 
T Consensus       185 ~----~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~--~~~~~pdgi~~d~-~G~lwv~-  255 (305)
T 3dr2_A          185 A----DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS--VPDGLPDGFCVDR-GGWLWSS-  255 (305)
T ss_dssp             E----EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC--CSSSCCCSEEECT-TSCEEEC-
T ss_pred             e----cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE--CCCCCCCeEEECC-CCCEEEe-
Confidence            2    233467899999 66666655544      7899999875431  111111  1233456788898 8885444 


Q ss_pred             ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107          215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF  265 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  265 (331)
                      ..+ .|.+||...  +.+..  ......+.+++|.|++ +.+.+++. +++
T Consensus       256 ~~~-gv~~~~~~g--~~~~~--~~~~~~~~~~~f~~d~-~~L~it~~-~~l  299 (305)
T 3dr2_A          256 SGT-GVCVFDSDG--QLLGH--IPTPGTASNCTFDQAQ-QRLFITGG-PCL  299 (305)
T ss_dssp             CSS-EEEEECTTS--CEEEE--EECSSCCCEEEECTTS-CEEEEEET-TEE
T ss_pred             cCC-cEEEECCCC--CEEEE--EECCCceeEEEEeCCC-CEEEEEcC-CeE
Confidence            444 499999853  34443  2233368999999876 44444443 553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.26  E-value=8.2e-10  Score=91.74  Aligned_cols=248  Identities=10%  Similarity=-0.058  Sum_probs=153.9

Q ss_pred             cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc----------CCccE-EEecCCCcccC--------
Q 020107           45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD----------ADGGL-LRDITGEKISS--------  105 (331)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i-iw~~~~~~~~~--------  105 (331)
                      .|.++|..+.+ .+..+..+. .+  .+.++|+    ++.++++.          .++.+ ++|+.+.+...        
T Consensus        47 ~vsvID~~t~~-v~~~i~vG~-~P--~i~~spD----g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~  118 (368)
T 1mda_H           47 ENWVSCAGCGV-TLGHSLGAF-LS--LAVAGHS----GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP  118 (368)
T ss_dssp             EEEEEETTTTE-EEEEEEECT-TC--EEEECTT----SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred             eEEEEECCCCe-EEEEEeCCC-CC--ceEECCC----CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc
Confidence            88899998876 455554444 34  7999999    88888886          35666 99988866421        


Q ss_pred             -----ccEEEEEEcCCCCeEEEEec--CCeEEE--EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107          106 -----SMCLCLEWNPSATSITVGLS--DGSVSI--VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG  176 (331)
Q Consensus       106 -----~~v~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (331)
                           .....+.++|+|++++++..  +..|.+  +|+.+     +..+.... .   ....|.....+++.+.|+.+.+
T Consensus       119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-----v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~  189 (368)
T 1mda_H          119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-----DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-----EEEEECSS-C---CCCEEEETTEEECCCCTTSCEE
T ss_pred             ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-----ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEE
Confidence                 12457899999999999875  467888  88876     22232111 1   2233444456677778899888


Q ss_pred             EEccC-----CCcee----eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee-------e--
Q 020107          177 WDIRE-----SPFKL----AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV-------C--  238 (331)
Q Consensus       177 ~d~~~-----~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~--  238 (331)
                      .|+.+     ++...    .+..   ...+.   . .+ ++..++..+. +.+.+.|.......+.....       .  
T Consensus       190 vd~~~~~~~~~~v~~~~t~~i~v---g~~P~---~-~~-~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~  260 (368)
T 1mda_H          190 SDLAAAPAAAGIVGAQCTGAQNC---SSQAA---Q-AN-YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADN  260 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCB---CSCCE---E-ET-TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred             EECccccccCCeEEEEeeeeeeC---CCCcc---c-cc-cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccc
Confidence            99876     32211    1111   23333   3 56 4555555555 89999998653211111000       0  


Q ss_pred             -cCCceEEEEECCCCCCeEEEEE---e-----cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEE
Q 020107          239 -LGGGVWRIKHHPFIPGLVLAAC---M-----HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLV  309 (331)
Q Consensus       239 -~~~~v~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  309 (331)
                       .......++++|++..++++..   .     .++..++++..  .+.+.++.... ...+++|+|++.        .++
T Consensus       261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t--~~vv~~i~vg~-~p~gi~~s~Dg~--------~l~  329 (368)
T 1mda_H          261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--GQTSGPISNGH-DSDAIIAAQDGA--------SDN  329 (368)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--CCEEECCEEEE-EECEEEECCSSS--------CEE
T ss_pred             cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC--CeEEEEEECCC-CcceEEECCCCC--------EEE
Confidence             0111222689999855554443   1     24556777766  46666665332 578999999984        456


Q ss_pred             EEeecCCCeEEEEcCCCccc
Q 020107          310 ATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       310 ~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ++....++.|.++|+.++..
T Consensus       330 va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          330 YANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EEEETTTTEEEEEESSSCEE
T ss_pred             EEccCCCCeEEEEECCCCcE
Confidence            66551289999999988753

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.21  E-value=1.1e-08  Score=84.96  Aligned_cols=271  Identities=11%  Similarity=0.044  Sum_probs=155.6

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEe-ecccCCCCCCCCCcEEEEeccCcccceEEeEeee------cCcEeEEEEcCCCCC
Q 020107            8 LDGNADAVEFCPQDSYHHVLAAST-YTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD------TAGIFDIKWSPVGGN   80 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~-~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~   80 (331)
                      ....+. +.++|++   ++|.++. +..... .+..++.|.+||..+.+ ....+.-+.      ......++|+|+   
T Consensus        77 vG~~P~-va~spDG---~~lyVan~~~~r~~-~G~~~~~VsviD~~t~~-v~~~I~v~~g~r~~~g~~P~~~a~spD---  147 (386)
T 3sjl_D           77 GGFLPN-PVVADDG---SFIAHASTVFSRIA-RGERTDYVEVFDPVTLL-PTADIELPDAPRFLVGTYPWMTSLTPD---  147 (386)
T ss_dssp             ECSSCE-EEECTTS---SCEEEEEEEEEETT-EEEEEEEEEEECTTTCC-EEEEEEETTCCCCCBSCCGGGEEECTT---
T ss_pred             CCCCCc-EEECCCC---CEEEEEcccccccc-cCCCCCEEEEEECCCCe-EEEEEECCCccccccCCCCceEEEcCC---
Confidence            333444 8888877   5554443 110000 00025789999999876 344442211      124567999999   


Q ss_pred             CCCeEEEEcC--CccE-EEecCCCcccCcc-E--EEEEEcCCCCeEEEEecCCeEEEEEccc-cceeeee--eeecccce
Q 020107           81 AGPFLAQADA--DGGL-LRDITGEKISSSM-C--LCLEWNPSATSITVGLSDGSVSIVSVVE-SQLEVLQ--QWKAHEFE  151 (331)
Q Consensus        81 ~~~~l~~~~~--dg~i-iw~~~~~~~~~~~-v--~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~--~~~~~~~~  151 (331)
                       +++|++++.  ++.+ ++|+.+.+..... +  ....+....+.+++.+.||.+.+.++.. ++.....  .+.....+
T Consensus       148 -Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~  226 (386)
T 3sjl_D          148 -GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF  226 (386)
T ss_dssp             -SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSC
T ss_pred             -CCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccc
Confidence             888888864  5677 9999887653110 0  1122322345677888899999999876 4431111  01111112


Q ss_pred             eE-EEeeCCCCCcEEEEEcCCCeEEEEEccCCCc--eeeeecc-------cCCCcceEEEEEecCCCCEEEEEec-----
Q 020107          152 LW-ATSFDVHQPHMVYTGSDDCKFSGWDIRESPF--KLAFQNS-------KIHKMGVCCIASIPSDSNTLLTGSY-----  216 (331)
Q Consensus       152 v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~-----  216 (331)
                      +. ...|.+.++++++ .+.+|.|.+.|+.+...  ...+..+       .-.......+.++| +++.++....     
T Consensus       227 ~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~  304 (386)
T 3sjl_D          227 LINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEW  304 (386)
T ss_dssp             BCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTT
T ss_pred             ccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEecccccc
Confidence            21 2355432555544 55589999999976542  2222200       00122334577788 7777666542     


Q ss_pred             -----CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCCcceee
Q 020107          217 -----DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHGSLAYG  290 (331)
Q Consensus       217 -----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  290 (331)
                           .+.|.++|+.+. +.+..  .....+++.|+++++++.+++++. .++.+.+++...  ++.+.++..- +.-..
T Consensus       305 ~hk~~~~~V~viD~~t~-kv~~~--i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t--~k~~~~i~~~-~~p~~  378 (386)
T 3sjl_D          305 RHKTASRFVVVLDAKTG-ERLAK--FEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES--GEELRSVNQL-GHGPQ  378 (386)
T ss_dssp             CTTSCEEEEEEEETTTC-CEEEE--EEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTT--CCEEEEECCC-CSSCC
T ss_pred             ccCCCCCEEEEEECCCC-eEEEE--EECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC--CcEEEEecCC-CCCce
Confidence                 257999999985 55555  334458899999999854666654 467788888765  5777777632 22233


Q ss_pred             eeecCC
Q 020107          291 ADWQRG  296 (331)
Q Consensus       291 ~~~~~~  296 (331)
                      +.+++|
T Consensus       379 l~~s~d  384 (386)
T 3sjl_D          379 VITTAD  384 (386)
T ss_dssp             EEEECC
T ss_pred             eEECCc
Confidence            444444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.18  E-value=1.9e-07  Score=78.17  Aligned_cols=250  Identities=11%  Similarity=-0.001  Sum_probs=146.9

Q ss_pred             eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee---e---cCcEeEEEEcCCCCCCCCeEEE
Q 020107           14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM---D---TAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus        14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      .+.++|++   ++|.++.........+..++.|.+||..+.+ ....+..+   .   ......+.|+|+    +++|++
T Consensus        70 ~i~~spDg---~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~-~~~~i~~~~~~~~~~g~~p~~~~~spD----G~~l~v  141 (373)
T 2mad_H           70 NPVAAHSG---SEFALASTSFSRIAKGKRTDYVEVFDPVTFL-PIADIELPDAPRFDVGPYSWMNANTPN----NADLLF  141 (373)
T ss_pred             CeEECCCC---CEEEEEeccccccccCCCCCeEEEEECCCCc-EEEEEECCCccccccCCCccceEECCC----CCEEEE
Confidence            78888877   6777764100000000136789999998764 33333211   0   123458999999    899998


Q ss_pred             EcC--CccE-EEecCCCcccCc--cE-EEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeee---eecccce-eEEEe
Q 020107           88 ADA--DGGL-LRDITGEKISSS--MC-LCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQ---WKAHEFE-LWATS  156 (331)
Q Consensus        88 ~~~--dg~i-iw~~~~~~~~~~--~v-~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~-v~~~~  156 (331)
                      ++.  ++.+ ++| .+.+....  ++ .++.+.|+++ .+++.+.||.+.++|. +++......   ......+ .....
T Consensus       142 ~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~  219 (373)
T 2mad_H          142 FQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA  219 (373)
T ss_pred             EecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence            874  4667 888 77654211  11 2344556554 4566677999999999 765421111   0011112 12344


Q ss_pred             eCCCCCcEEEEEcCCCeEEEEEccCCCc--eeeeeccc-------CCCcceEEEEEecCCCCEEEEEec----------C
Q 020107          157 FDVHQPHMVYTGSDDCKFSGWDIRESPF--KLAFQNSK-------IHKMGVCCIASIPSDSNTLLTGSY----------D  217 (331)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~----------d  217 (331)
                      +.+.++.+++. +..+.+.+.|+.....  ...+....       ........+.++| +++.+++...          +
T Consensus       220 ~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~  297 (373)
T 2mad_H          220 QANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAA  297 (373)
T ss_pred             eEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEEeccCCcccccCCC
Confidence            55534444444 4678999999975532  12221100       0123344578899 7777776543          3


Q ss_pred             CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEE
Q 020107          218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLET  280 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  280 (331)
                      +.|.++|..+. +.+..  .........++|+|+++..++++. .++.+.+++...  .+.+.+
T Consensus       298 ~~V~VID~~t~-~vv~~--i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t--~~vv~~  356 (373)
T 2mad_H          298 KEVTSVTGLVG-QTSSQ--ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA--GDQDQS  356 (373)
T ss_pred             CeEEEEECCCC-EEEEE--EECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC--CCEEee
Confidence            57999999884 55555  355567899999999843566665 478888888766  455555

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.12  E-value=1.9e-07  Score=78.29  Aligned_cols=202  Identities=7%  Similarity=-0.000  Sum_probs=126.4

Q ss_pred             EEc--CCCCeEEEEe-cCCeEEEEEcccc--ceeeeeeee-------cccceeEEEeeCCCCCcEEEEEcCC------Ce
Q 020107          112 EWN--PSATSITVGL-SDGSVSIVSVVES--QLEVLQQWK-------AHEFELWATSFDVHQPHMVYTGSDD------CK  173 (331)
Q Consensus       112 ~~~--~~~~~l~~~~-~dg~i~i~d~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------g~  173 (331)
                      .++  +++++|++.+ .++.|.++|+.+.  +++..+.+.       .....-..+...| ++ +++++..+      +.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence            346  7788876655 4899999998743  333344442       1122455677788 66 66666555      78


Q ss_pred             EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-------------------cCCeEEEEEecCCCCCcee
Q 020107          174 FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-------------------YDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       174 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~  234 (331)
                      |.++|..+.+.+..+.........-+.+.|+| +++.+++..                   .+.+|.+||+.+. +.+..
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~t  243 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHS  243 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEE
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeE
Confidence            99999999988777764221223345688899 888888884                   3789999999974 44444


Q ss_pred             eeee-cCCceEEEEE--CCCCCCeEEEEE-----ecCcEEEEEEcCcccceeEEe--ecC----------------Ccce
Q 020107          235 TSVC-LGGGVWRIKH--HPFIPGLVLAAC-----MHNGFAVVKVGGEKAEVLETY--AKH----------------GSLA  288 (331)
Q Consensus       235 ~~~~-~~~~v~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~h----------------~~~v  288 (331)
                      +..+ .......+.|  +|+++..+++.-     .++.+.+|.......+..+.+  ...                ....
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence            2222 1134556666  999844444444     455655555443211222221  110                2356


Q ss_pred             eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      .++.+++++         ++|..+.+..+.|.++|+.+
T Consensus       324 a~I~lS~DG---------rfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          324 TDIDISLDD---------KFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             CCEEECTTS---------CEEEEEETTTTEEEEEECSS
T ss_pred             eEEEECCCC---------CEEEEEeCCCCEEEEEEecC
Confidence            789999999         55555544789999999863

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.11  E-value=9.8e-07  Score=70.27  Aligned_cols=239  Identities=8%  Similarity=0.017  Sum_probs=139.3

Q ss_pred             CCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEE
Q 020107           43 NGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLE  112 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~  112 (331)
                      .+.|+.++++.....   ...........+..++|.|++   +.++++-..++.+ .+++.+...      .......++
T Consensus         9 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~---~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia   85 (267)
T 1npe_A            9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD---KVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIA   85 (267)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT---TEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEE
T ss_pred             CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCC---CEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEE
Confidence            558999998765411   112222223467899999972   3344455556667 666655432      114568899


Q ss_pred             EcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC--CCeEEEEEccCCCceeeee
Q 020107          113 WNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD--DCKFSGWDIRESPFKLAFQ  189 (331)
Q Consensus       113 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~  189 (331)
                      +++++..|+.+. ..+.|.+++++......+  ..........++++|.++.++++-..  .+.|..+++.... ...+.
T Consensus        86 ~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~  162 (267)
T 1npe_A           86 LDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA  162 (267)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE
T ss_pred             EEecCCeEEEEECCCCEEEEEEcCCCCEEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE
Confidence            999777666655 478999999875432111  22122456889999844555555433  4788888886433 23332


Q ss_pred             cccCCCcceEEEEEecCCCCEE-EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107          190 NSKIHKMGVCCIASIPSDSNTL-LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVV  268 (331)
Q Consensus       190 ~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  268 (331)
                      .  ..-.....++++| ++..| ++-...+.|..+|+... . .... .........++..  +..++++....+.+  +
T Consensus       163 ~--~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g~-~-~~~~-~~~~~~P~gi~~d--~~~lyva~~~~~~v--~  232 (267)
T 1npe_A          163 Q--DNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQP-G-RRKV-LEGLQYPFAVTSY--GKNLYYTDWKTNSV--I  232 (267)
T ss_dssp             C--TTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEE-E-EEEE-EECCCSEEEEEEE--TTEEEEEETTTTEE--E
T ss_pred             E--CCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCCC-c-eEEE-ecCCCCceEEEEe--CCEEEEEECCCCeE--E
Confidence            1  1234678999999 65554 55556789999998753 2 2221 2222334566654  32444443344554  4


Q ss_pred             EEcCcccceeEEeecCC-cceeeeeecCCC
Q 020107          269 KVGGEKAEVLETYAKHG-SLAYGADWQRGR  297 (331)
Q Consensus       269 ~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~  297 (331)
                      .+....++.+.++.... ....++++.|++
T Consensus       233 ~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          233 AMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             EEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             EEeCCCCCceEEEccccccccceeeecCcc
Confidence            44443367777765332 246788888875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.09  E-value=6.5e-07  Score=75.16  Aligned_cols=211  Identities=10%  Similarity=0.070  Sum_probs=131.7

Q ss_pred             CCeE-EEEcCCccE-EEecCCCcc----c-------------CccEEEEEEcCCCCeEEEEecC------CeEEEEEccc
Q 020107           82 GPFL-AQADADGGL-LRDITGEKI----S-------------SSMCLCLEWNPSATSITVGLSD------GSVSIVSVVE  136 (331)
Q Consensus        82 ~~~l-~~~~~dg~i-iw~~~~~~~----~-------------~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~  136 (331)
                      +++| +.+..++.| +.|+.+...    +             ......+...|++ .++++..+      |.|.++|.++
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T  173 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS  173 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence            4555 455666777 888865421    1             1123456788999 66665555      7899999998


Q ss_pred             cceeeeeeeecc--c-ceeEEEeeCCCCCcEEEEEc-------------------CCCeEEEEEccCCCceeeeecccCC
Q 020107          137 SQLEVLQQWKAH--E-FELWATSFDVHQPHMVYTGS-------------------DDCKFSGWDIRESPFKLAFQNSKIH  194 (331)
Q Consensus       137 ~~~~~~~~~~~~--~-~~v~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~  194 (331)
                      .+.  +..+...  . .-.+.+.|+| +.+.+++..                   .+.+|.+||+.+++....+.... .
T Consensus       174 ~~v--~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~  249 (462)
T 2ece_A          174 FEP--LGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-E  249 (462)
T ss_dssp             CCE--EEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-T
T ss_pred             CeE--EEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-C
Confidence            755  5555422  1 2244678898 667777763                   47899999999877666666511 1


Q ss_pred             CcceEEEEE--ecCCCCEEEEEec------CCeEEEEEecCCCCCceeee--ee----------------cCCceEEEEE
Q 020107          195 KMGVCCIAS--IPSDSNTLLTGSY------DEYLRVWDVRSISKPVNETS--VC----------------LGGGVWRIKH  248 (331)
Q Consensus       195 ~~~v~~~~~--~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~--~~----------------~~~~v~~~~~  248 (331)
                      ......+.|  +| ++++++++++      +++|.+|....+.-......  ..                .......|.+
T Consensus       250 g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          250 NRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             EEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             CCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence            234566666  99 8888777764      56887776654210000000  00                0245788999


Q ss_pred             CCCCCCeEEEEEecCcEEEEEEcCc-ccceeEEeecCC--------------cceeeeeecCCCC
Q 020107          249 HPFIPGLVLAACMHNGFAVVKVGGE-KAEVLETYAKHG--------------SLAYGADWQRGRS  298 (331)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~--------------~~v~~~~~~~~~~  298 (331)
                      +|+++.++++.-..+.+.++++.+. ..+++..+.-..              +.-..+.++|++.
T Consensus       329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk  393 (462)
T 2ece_A          329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR  393 (462)
T ss_dssp             CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC
Confidence            9998555555556788999998643 245555554210              1246799999994

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.05  E-value=1.8e-10  Score=96.64  Aligned_cols=186  Identities=12%  Similarity=-0.032  Sum_probs=96.7

Q ss_pred             CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107          116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK  195 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  195 (331)
                      ++..+++++.||.|+.||..+++.  +-.+..  ..+.+..+.. ++..+++++.|+.|+.||..+++....+..   +.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~--~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~---~~   79 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI--KWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPF---TI   79 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE--EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC---CH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE--EEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeec---cC
Confidence            577899999999999999999865  444443  3455554554 556778888999999999998876555543   21


Q ss_pred             c-ceE-EEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          196 M-GVC-CIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       196 ~-~v~-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      . .+. +..+.  .+..+++++.|+.|+.||.++++.....  ..+.    ...++|++ +.+++++.++.+..|+... 
T Consensus        80 ~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~--~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~t-  149 (369)
T 2hz6_A           80 PELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTL--SSAF----ADSLSPST-SLLYLGRTEYTITMYDTKT-  149 (369)
T ss_dssp             HHHHTTCSCC-------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSS-
T ss_pred             ccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEe--cCCC----cccccccC-CEEEEEecCCEEEEEECCC-
Confidence            1 110 00111  3456788889999999999987443222  2221    23456654 6677777777766666554 


Q ss_pred             ccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          274 KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       274 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                       ++.+..+..+.  .....+.++..      ....++.++ .||.|+.||..++..
T Consensus       150 -G~~~W~~~~~~--~~~~~~~~~~~------~~~~v~~~~-~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          150 -RELRWNATYFD--YAASLPEDDVD------YKMSHFVSN-GDGLVVTVDSESGDV  195 (369)
T ss_dssp             -SSCCCEEEEEE--ECCBCCCCCTT------CCCCEEEEE-TSCEEEEECTTTCCE
T ss_pred             -CCEEEeEeccc--ccCccccCCcc------ccceEEEEC-CCCEEEEEECCCCcE
Confidence             45444433211  12233333210      002466677 799999999988754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.05  E-value=2.5e-07  Score=83.67  Aligned_cols=193  Identities=12%  Similarity=0.145  Sum_probs=118.0

Q ss_pred             CCeEEEEec------CCeEEEEEccccceeeeeeeeccc--------------------------------ceeEEEeeC
Q 020107          117 ATSITVGLS------DGSVSIVSVVESQLEVLQQWKAHE--------------------------------FELWATSFD  158 (331)
Q Consensus       117 ~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~--------------------------------~~v~~~~~~  158 (331)
                      +..+++++.      +|.|+.+|.++++.  +-.+....                                .....++++
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~--~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d  251 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGER--KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD  251 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCE--EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcE--EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc
Confidence            345666654      68999999999865  32222111                                011246777


Q ss_pred             CCCCcEEEEEcCCC-------------------eEEEEEccCCCceeeeecccCCC-------cceEEEEEecCCC---C
Q 020107          159 VHQPHMVYTGSDDC-------------------KFSGWDIRESPFKLAFQNSKIHK-------MGVCCIASIPSDS---N  209 (331)
Q Consensus       159 ~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~  209 (331)
                      | +..+++.+..++                   .|..+|.++++....++... |.       ....-+.... ++   .
T Consensus       252 ~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~-~d~wd~~~~~~p~l~~~~~-dG~~~~  328 (677)
T 1kb0_A          252 A-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP-GDNWDYTSTQPMILADIKI-AGKPRK  328 (677)
T ss_dssp             T-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCCCCSCCEEEEEEE-TTEEEE
T ss_pred             C-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC-CcccccccCCCcEEEeccc-CCcEee
Confidence            7 567777776654                   59999999998777766521 21       2223334444 56   6


Q ss_pred             EEEEEecCCeEEEEEecCCCCCceeeeeec----------CCce------------------------EEEEECCCCCCe
Q 020107          210 TLLTGSYDEYLRVWDVRSISKPVNETSVCL----------GGGV------------------------WRIKHHPFIPGL  255 (331)
Q Consensus       210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~v------------------------~~~~~~~~~~~~  255 (331)
                      .++.++.+|.+.++|.++++ ++.......          ..++                        ..++++|+. ++
T Consensus       329 ~l~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~  406 (677)
T 1kb0_A          329 VILHAPKNGFFFVLDRTNGK-FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GL  406 (677)
T ss_dssp             EEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TE
T ss_pred             EEEEECCCCEEEEEECCCCC-EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CE
Confidence            89999999999999999864 333211100          0011                        146788876 56


Q ss_pred             EEEEEec-------------------------------------------CcEEEEEEcCcccceeEEeecCCcceeeee
Q 020107          256 VLAACMH-------------------------------------------NGFAVVKVGGEKAEVLETYAKHGSLAYGAD  292 (331)
Q Consensus       256 ~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  292 (331)
                      +++...+                                           +.+..|++..  ++.+-.+. +...+.+..
T Consensus       407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t--G~~~W~~~-~~~~~~~g~  483 (677)
T 1kb0_A          407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA--QKAAWSVE-HVSPWNGGT  483 (677)
T ss_dssp             EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT--TEEEEEEE-ESSSCCCCE
T ss_pred             EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC--CcEEeecC-CCCCCcCcc
Confidence            6554432                                           3344455433  45555554 233445555


Q ss_pred             ecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +...+         .+++.++ .||.+++||..++..
T Consensus       484 ~~~~g---------~~v~~g~-~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          484 LTTAG---------NVVFQGT-ADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEETT---------TEEEEEC-TTSEEEEEETTTCCE
T ss_pred             eEeCC---------CEEEEEC-CCCcEEEEECCCCce
Confidence            66665         5788888 899999999998864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.02  E-value=3.2e-08  Score=82.07  Aligned_cols=207  Identities=9%  Similarity=-0.026  Sum_probs=126.5

Q ss_pred             ccEEEEEEcCCCCeEEEEec--CCeEEEEEccccceeeee----eeecccceeEEEeeCCCCCcEEEEEcC-----CCeE
Q 020107          106 SMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQ----QWKAHEFELWATSFDVHQPHMVYTGSD-----DCKF  174 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i  174 (331)
                      .....++++++++.+++...  ++.+++|.+.+++..+..    ....+...+..+++++ +++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeE
Confidence            45788999999998887642  343555555444432111    1112446789999998 6666665433     5799


Q ss_pred             EEEEccCCCceeeeeccc---CCCcceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCCCceeeeee----------
Q 020107          175 SGWDIRESPFKLAFQNSK---IHKMGVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISKPVNETSVC----------  238 (331)
Q Consensus       175 ~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~----------  238 (331)
                      .+||+.+++....+....   .+...+..++++|.++..+++..   .++.|.+||+.+++ .... ...          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~r~-~~~~~~~~~~~~~  173 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AARV-LQGYPGIAPEDID  173 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EEEE-CTTCTTTSCCSCC
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EEEE-ecCCCcccccccc
Confidence            999999887555554311   12345789999983344555555   67899999987642 1111 111          


Q ss_pred             -------------------cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--------ccee--EEeecCCccee
Q 020107          239 -------------------LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK--------AEVL--ETYAKHGSLAY  289 (331)
Q Consensus       239 -------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~h~~~v~  289 (331)
                                         ....+..|+|+|++ ..++.+...+. ++|.+....        .+..  ....++.....
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd  251 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICD  251 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence                               01236889999997 44555544442 466654210        0100  01123344567


Q ss_pred             eeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ++++++++         .++++.. .++.|.+|+.+++
T Consensus       252 gia~d~~G---------~l~va~~-~~~~V~~~d~~~G  279 (343)
T 2qe8_A          252 GISIDKDH---------NIYVGDL-AHSAIGVITSADR  279 (343)
T ss_dssp             CEEECTTC---------CEEEEEG-GGTEEEEEETTTT
T ss_pred             eEEECCCC---------CEEEEcc-CCCeEEEEECCCC
Confidence            89999988         6888877 8999999998444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.01  E-value=7e-07  Score=80.94  Aligned_cols=73  Identities=11%  Similarity=0.189  Sum_probs=50.7

Q ss_pred             EEeeCCCCCcEEEEEcCCCe-------------------EEEEEccCCCceeeeecccCCC-------cceEEEEEecCC
Q 020107          154 ATSFDVHQPHMVYTGSDDCK-------------------FSGWDIRESPFKLAFQNSKIHK-------MGVCCIASIPSD  207 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~  207 (331)
                      .++++| +..+++.+..++.                   |..+|.++++.+..++.. .|.       ..+....... +
T Consensus       239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~~~l~d~~~-~  315 (689)
T 1yiq_A          239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT-PGDAWDYTATQHMILAELPI-D  315 (689)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-T
T ss_pred             ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-CcccccccCCCCcEEEeecc-C
Confidence            467777 5678888887764                   999999999877766641 121       1222223223 4


Q ss_pred             CC---EEEEEecCCeEEEEEecCCC
Q 020107          208 SN---TLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       208 ~~---~l~~~~~d~~i~iwd~~~~~  229 (331)
                      +.   .++.++.+|.++++|.++++
T Consensus       316 G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          316 GKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CcEEEEEEEECCCCeEEEEECCCCC
Confidence            54   78899999999999999864

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.01  E-value=1.9e-06  Score=70.62  Aligned_cols=238  Identities=11%  Similarity=-0.002  Sum_probs=140.9

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-------------------------CccEEEEEEcCCCCeE
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-------------------------SSMCLCLEWNPSATSI  120 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-------------------------~~~v~~~~~~~~~~~l  120 (331)
                      ....+++|.++    +.++.++..++.+ .|+..+....                         ...+..+++.++...|
T Consensus        19 ~~p~~i~~d~~----g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l   94 (322)
T 2fp8_A           19 YAPNSFTFDST----NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL   94 (322)
T ss_dssp             SCCCCEECCTT----CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred             CCceEEEEcCC----CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence            34567888888    7778888888888 6666543221                         1246889999744456


Q ss_pred             EEEecCCeEEEEEccccceeeeeeee-c-ccceeEEEeeCCCCCcEEEEEcC-----------------CCeEEEEEccC
Q 020107          121 TVGLSDGSVSIVSVVESQLEVLQQWK-A-HEFELWATSFDVHQPHMVYTGSD-----------------DCKFSGWDIRE  181 (331)
Q Consensus       121 ~~~~~dg~i~i~d~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~  181 (331)
                      +++...+.|..+|..++....+.... + .......+++.+.++++.++-..                 ++.|..+|..+
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            66655556888887765432222111 1 11246788888624455555322                 36788888876


Q ss_pred             CCceeeeecccCCCcceEEEEEecCCCCEEEEE-ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE
Q 020107          182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG-SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC  260 (331)
Q Consensus       182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  260 (331)
                      ++.......    -.....|+++| +++.|+.+ ...+.|..|++..........+....+ ...+++.+++ .++++..
T Consensus       175 ~~~~~~~~~----~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G-~l~va~~  247 (322)
T 2fp8_A          175 KETTLLLKE----LHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG-HFWVSSS  247 (322)
T ss_dssp             TEEEEEEEE----ESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTS-CEEEEEE
T ss_pred             CEEEEeccC----CccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCC-CEEEEec
Confidence            653222221    23456799999 88765555 566899999987532111111122334 7889999986 5555554


Q ss_pred             ec--------CcEEEEEEcCcccceeEEeecCC----cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          261 MH--------NGFAVVKVGGEKAEVLETYAKHG----SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       261 ~~--------~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ..        ..-.++.+... ++.+..+....    ..++.+.+ .++         +++++.. ..+.|..++++..
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g---------~L~v~~~-~~~~i~~~~~~~~  314 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDG---------LLYIGTL-FHGSVGILVYDKK  314 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETT---------EEEEECS-SCSEEEEEEC---
T ss_pred             CcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCC---------EEEEeec-CCCceEEEecccc
Confidence            41        12235555543 66666665432    34666666 344         5666666 7899999998754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.98  E-value=2e-07  Score=78.80  Aligned_cols=260  Identities=12%  Similarity=0.070  Sum_probs=150.7

Q ss_pred             eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee------ecCcEeEEEEcCCCC
Q 020107            6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM------DTAGIFDIKWSPVGG   79 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~   79 (331)
                      +.....+ .|.++|++   ++|.++.+.......+..++.|.++|..+.+ ....+.-+      .......+.|+|+  
T Consensus       115 I~vG~~P-gia~SpDg---k~lyVan~~~~~~~~G~~~~~VsviD~~t~~-vv~~I~v~g~~r~~~g~~P~~~~~spD--  187 (426)
T 3c75_H          115 TDGGFLP-HPVAAEDG---SFFAQASTVFERIARGKRTDYVEVFDPVTFL-PIADIELPDAPRFLVGTYQWMNALTPD--  187 (426)
T ss_dssp             EEECSSC-EEEECTTS---SCEEEEEEEEEETTEEEEEEEEEEECTTTCC-EEEEEEETTCCCCCBSCCGGGSEECTT--
T ss_pred             EECCCCC-ceEECCCC---CEEEEEeccccccccCCCCCEEEEEECCCCc-EEEEEECCCccccccCCCcceEEEcCC--
Confidence            3444455 88898887   5555554100000000026789999999876 34443221      0123567899999  


Q ss_pred             CCCCeEEEEcC--CccE-EEecCCCcccCc-cEE-EEEEcCCC-CeEEEEecCCeEEEEEccccceeee--eeeecccce
Q 020107           80 NAGPFLAQADA--DGGL-LRDITGEKISSS-MCL-CLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVL--QQWKAHEFE  151 (331)
Q Consensus        80 ~~~~~l~~~~~--dg~i-iw~~~~~~~~~~-~v~-~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~  151 (331)
                        +++|+++..  ++.+ +.|+.+.+.... .+- +....|++ ..+++.+.||.+.+.+..+++....  ..+.....+
T Consensus       188 --Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p  265 (426)
T 3c75_H          188 --NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDEL  265 (426)
T ss_dssp             --SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSC
T ss_pred             --CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCc
Confidence              889988874  4567 888887664211 000 11233433 4456667788888888855543211  011111112


Q ss_pred             e-EEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce--eeeeccc-------CCCcceEEEEEecCCCCEEEEEec-----
Q 020107          152 L-WATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK--LAFQNSK-------IHKMGVCCIASIPSDSNTLLTGSY-----  216 (331)
Q Consensus       152 v-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~-----  216 (331)
                      + ..+.+.+ ++..++..+..+.+.+.|.......  ..+....       ........+.++| ++..+++...     
T Consensus       266 ~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~g  343 (426)
T 3c75_H          266 LINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEW  343 (426)
T ss_dssp             BCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTT
T ss_pred             eeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccc
Confidence            1 2345677 5555555567889999999754321  1111100       0011222368899 7666665532     


Q ss_pred             -----CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEe
Q 020107          217 -----DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETY  281 (331)
Q Consensus       217 -----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  281 (331)
                           ++.|.++|..+. +.+..  ..-......++|+|+++.+++++. .++.+.+++...  .+.+.++
T Consensus       344 thk~~s~~VsVID~~T~-kvv~~--I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t--~kvv~tI  409 (426)
T 3c75_H          344 KHKAASRFVVVLNAETG-ERINK--IELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT--GEELRSV  409 (426)
T ss_dssp             CTTSCEEEEEEEETTTC-CEEEE--EEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT--CCEEEEE
T ss_pred             cccCCCCEEEEEECCCC-eEEEE--EECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC--CCEEEEe
Confidence                 357999999985 55555  333446899999999843666666 578888888876  5777776

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.96  E-value=1.7e-07  Score=81.41  Aligned_cols=141  Identities=15%  Similarity=0.074  Sum_probs=90.5

Q ss_pred             CeEEEEEccC--CCc-eeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCC-----------Cceeee
Q 020107          172 CKFSGWDIRE--SPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISK-----------PVNETS  236 (331)
Q Consensus       172 g~i~i~d~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-----------~~~~~~  236 (331)
                      +.|.+.|.++  ++. ...+..    .....++.++| |++++++++ .+.+|.++|+.+.+.           ...+  
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipv----g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~--  326 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE--  326 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEE----ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC--
T ss_pred             CcEEEEeCcccCCceeEEEEec----CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE--
Confidence            3488889887  443 334443    33567899999 888766655 688999999996421           1122  


Q ss_pred             eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc--------ccceeEEeecCCcc-----eeeeeecCCCCccccc
Q 020107          237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE--------KAEVLETYAKHGSL-----AYGADWQRGRSSLEGK  303 (331)
Q Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~~~  303 (331)
                      ..-......++|+|++ ..+++...++.+..|++...        ..+.+.++..|-.+     -.++..+||+      
T Consensus       327 v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG------  399 (595)
T 1fwx_A          327 PELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN------  399 (595)
T ss_dssp             CBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS------
T ss_pred             cCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC------
Confidence            3455678999999997 66666667788888988651        13556666654332     2345678888      


Q ss_pred             ccCcEEEEeec--CCCeE----------EEEcCCCccc
Q 020107          304 RKNSLVATCSF--YDRLL----------RIWMPESDCL  329 (331)
Q Consensus       304 ~~~~~l~s~~~--~d~~i----------~iW~~~~~~~  329 (331)
                         ++|++...  .|+.+          .++|++.+.+
T Consensus       400 ---k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          400 ---DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             ---SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             ---CEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence               56666531  23321          7788865543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.96  E-value=3.9e-08  Score=80.91  Aligned_cols=240  Identities=10%  Similarity=0.038  Sum_probs=139.4

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcC
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNP  115 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~  115 (331)
                      .++.|..|| .+++  ..-........+.++...++    + .|..++.+  + .++......     ........... 
T Consensus        38 ~~~~l~~~d-~~g~--~~~~~~~~~~~~~~~~~~~~----g-~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~-  106 (330)
T 3hxj_A           38 SNKNLYAIN-TDGS--VKWFFKSGEIIECRPSIGKD----G-TIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIF-  106 (330)
T ss_dssp             TTTTTEEEC-TTSC--EEESSCGGGEEEECCEETTT----T-EECCSSCE--EEEECCCGGGGGGSCC-----CCEEEE-
T ss_pred             CCCEEEEEC-CCCc--EEEEEecCCCcccceEEecC----C-cEEEecCc--EEEECCCCcEEEEEECCCCcccCceEE-
Confidence            588899999 5554  21111222334566666655    3 34444444  5 555422111     11111122222 


Q ss_pred             CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107          116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK  195 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  195 (331)
                       +..+.+++.++.|..+|.. ++.  ..........+.++...+ ++. +..++.++.|..+|.. ++....+..   ..
T Consensus       107 -~~~l~v~t~~~~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~---~~  176 (330)
T 3hxj_A          107 -EDILYVTSMDGHLYAINTD-GTE--KWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKT---ND  176 (330)
T ss_dssp             -TTEEEEECTTSEEEEECTT-SCE--EEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEEC---SS
T ss_pred             -CCEEEEEecCCEEEEEcCC-CCE--EEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEec---CC
Confidence             5668888889999999988 543  333333444455666654 444 6667788999999998 665555554   34


Q ss_pred             cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc
Q 020107          196 MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA  275 (331)
Q Consensus       196 ~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (331)
                      ..+.++...+ ++.+++ ++  +.|..+| .++ ..... .......+.++...++  +.+.+++.++++..+  .. .+
T Consensus       177 ~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g-~~~~~-~~~~~~~~~~~~~~~~--g~l~v~t~~~gl~~~--~~-~g  244 (330)
T 3hxj_A          177 AITSAASIGK-DGTIYF-GS--DKVYAIN-PDG-TEKWN-FYAGYWTVTRPAISED--GTIYVTSLDGHLYAI--NP-DG  244 (330)
T ss_dssp             CCCSCCEECT-TCCEEE-ES--SSEEEEC-TTS-CEEEE-ECCSSCCCSCCEECTT--SCEEEEETTTEEEEE--CT-TS
T ss_pred             CceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCC-cEEEE-EccCCcceeceEECCC--CeEEEEcCCCeEEEE--CC-CC
Confidence            5566777766 665444 44  7799999 554 32322 1333456778888887  456666666775444  33 35


Q ss_pred             ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          276 EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       276 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      +.+..+......+..+...+++          .|..++ .+|.|..+|..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g----------~l~v~t-~~ggl~~~d~~  283 (330)
T 3hxj_A          245 TEKWRFKTGKRIESSPVIGNTD----------TIYFGS-YDGHLYAINPD  283 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTS----------CEEEEC-TTCEEEEECTT
T ss_pred             CEeEEeeCCCCccccceEcCCC----------eEEEec-CCCCEEEECCC
Confidence            5555555444444555555554          566666 68889999863

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.94  E-value=2.9e-06  Score=67.56  Aligned_cols=200  Identities=8%  Similarity=-0.061  Sum_probs=121.9

Q ss_pred             cEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107          107 MCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK  185 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (331)
                      .+..++|+++++.|+.+.. ++.|..+++.....  ...+.........++++|.++.++++-...+.|.++++..... 
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-  113 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-  113 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC--EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc--EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-
Confidence            4568999997777666554 78999999876543  2222222246789999984556666667788999999875432 


Q ss_pred             eeeecccCCCcceEEEEEecCCCCEEEEEec---CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec
Q 020107          186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSY---DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH  262 (331)
Q Consensus       186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  262 (331)
                      ..+.. . .......++++| ++..|+.+..   .+.|..+++...  ...............++++|++..++++....
T Consensus       114 ~~~~~-~-~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~--~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          114 RVLFD-T-GLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             EEEEC-S-SCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEEEE-C-CCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCC--CcEEEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence            22221 1 224678999999 5555554443   368888887642  22221112234578899999864455555555


Q ss_pred             CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          263 NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      +.+..+++...  .....+.+ .....+++.. .+         .++++.. ..+.|.+++.+++.
T Consensus       189 ~~I~~~~~~g~--~~~~~~~~-~~~P~gi~~d-~~---------~lyva~~-~~~~v~~~d~~~g~  240 (267)
T 1npe_A          189 HRAECLNPAQP--GRRKVLEG-LQYPFAVTSY-GK---------NLYYTDW-KTNSVIAMDLAISK  240 (267)
T ss_dssp             TEEEEEETTEE--EEEEEEEC-CCSEEEEEEE-TT---------EEEEEET-TTTEEEEEETTTTE
T ss_pred             CEEEEEecCCC--ceEEEecC-CCCceEEEEe-CC---------EEEEEEC-CCCeEEEEeCCCCC
Confidence            66666665432  22222222 2233456554 22         4555555 67899999988764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.94  E-value=7.2e-10  Score=92.92  Aligned_cols=183  Identities=12%  Similarity=0.040  Sum_probs=89.0

Q ss_pred             CCeEEEEcCCccE-EEecCCCccc----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc-eeE-E
Q 020107           82 GPFLAQADADGGL-LRDITGEKIS----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF-ELW-A  154 (331)
Q Consensus        82 ~~~l~~~~~dg~i-iw~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~v~-~  154 (331)
                      +..+++++.||.+ .||..+++..    ...+.+..+..++..+++++.||.|+.||.++++.  +..+..+.. .+. +
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~--~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG--LTKLPFTIPELVQAS   86 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CC--SEECSCCHHHHHTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCce--eeeeeccCccccccC
Confidence            5578888888887 6666555431    12333334445677788888999999999988754  223322211 111 1


Q ss_pred             EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107          155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      ..+.  .+..+++++.++.|+.||.++++....+..   +.    ...++| ++..+++++.|+.|+.||.++++.....
T Consensus        87 p~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           87 PCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF----ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             SCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             ceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC----cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence            1111  335677888899999999999987665554   22    234567 7788999999999999999987443332


Q ss_pred             eeeecCCceEEEEECCCC--CCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107          235 TSVCLGGGVWRIKHHPFI--PGLVLAACMHNGFAVVKVGGEKAEVLETYA  282 (331)
Q Consensus       235 ~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (331)
                      ....    .....+.++.  .+.+++++.++.+..|+...  ++.+..+.
T Consensus       157 ~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t--G~~~W~~~  200 (369)
T 2hz6_A          157 TYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES--GDVLWIQN  200 (369)
T ss_dssp             EEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT--CCEEEEEE
T ss_pred             eccc----ccCccccCCccccceEEEECCCCEEEEEECCC--CcEEEEec
Confidence            1111    1222233321  14566666677766666544  56655554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.92  E-value=3.1e-07  Score=83.22  Aligned_cols=188  Identities=12%  Similarity=0.056  Sum_probs=114.3

Q ss_pred             EEEEcCCCCeEEEEecCCe-------------------EEEEEccccceeeeeeeeccc-------ceeEEEeeCCCCC-
Q 020107          110 CLEWNPSATSITVGLSDGS-------------------VSIVSVVESQLEVLQQWKAHE-------FELWATSFDVHQP-  162 (331)
Q Consensus       110 ~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~-  162 (331)
                      .++++|+...++++..++.                   |..+|.++++..-......|.       .++....... ++ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~  317 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGK  317 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCc
Confidence            5778888899999988764                   999999998753222222221       1111111111 33 


Q ss_pred             --cEEEEEcCCCeEEEEEccCCCceeeeeccc-------------------------CCCc-----------ceEEEEEe
Q 020107          163 --HMVYTGSDDCKFSGWDIRESPFKLAFQNSK-------------------------IHKM-----------GVCCIASI  204 (331)
Q Consensus       163 --~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------~~~~-----------~v~~~~~~  204 (331)
                        ..++.++.+|.++++|.++++.+......+                         ....           .-..++++
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence              378889999999999999998653222100                         0000           01136788


Q ss_pred             cCCCCEEEEEec---------------------------------------------CCeEEEEEecCCCCCceeeeeec
Q 020107          205 PSDSNTLLTGSY---------------------------------------------DEYLRVWDVRSISKPVNETSVCL  239 (331)
Q Consensus       205 ~~~~~~l~~~~~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~  239 (331)
                      | +..++++...                                             +|.|+.||+.+++ .+-+  ..+
T Consensus       398 p-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~-~~W~--~~~  473 (689)
T 1yiq_A          398 P-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ-AAWE--VPY  473 (689)
T ss_dssp             T-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE-EEEE--EEE
T ss_pred             C-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC-eEeE--ccC
Confidence            8 6666666532                                             3779999999863 3333  333


Q ss_pred             CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc-ceeeeeecCCCCcccccccCcEEEEee
Q 020107          240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS-LAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                      ..++..-.+...+ ++++.++.++.++.|+...  ++.+.+++...+ ...-+.|..++.        ++++..+
T Consensus       474 ~~~~~~g~~~tag-glvf~gt~dg~l~a~D~~t--G~~lw~~~~~~~~~~~p~ty~~~G~--------qyv~~~~  537 (689)
T 1yiq_A          474 VTIFNGGTLSTAG-NLVFEGSADGRVIAYAADT--GEKLWEQPAASGVMAAPVTYSVDGE--------QYVTFMA  537 (689)
T ss_dssp             SSSCCCCEEEETT-TEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTE--------EEEEEEE
T ss_pred             CCCccCccceECC-CEEEEECCCCcEEEEECCC--CccceeeeCCCCcccCceEEEECCE--------EEEEEEe
Confidence            3444433444444 6777777788877777666  788887774332 234567777874        5666553

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.92  E-value=1.2e-06  Score=73.57  Aligned_cols=247  Identities=10%  Similarity=-0.008  Sum_probs=133.5

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccE------E
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMC------L  109 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v------~  109 (331)
                      .++.|..+|..+++.....  .............      +..+++++.++.+ .++..+++..     ...+      .
T Consensus       111 ~~g~l~a~d~~tG~~~W~~--~~~~~~~~~p~~~------~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~  182 (376)
T 3q7m_A          111 EKAQVYALNTSDGTVAWQT--KVAGEALSRPVVS------DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES  182 (376)
T ss_dssp             TTSEEEEEETTTCCEEEEE--ECSSCCCSCCEEE------TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC
T ss_pred             CCCEEEEEECCCCCEEEEE--eCCCceEcCCEEE------CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC
Confidence            5899999999877622221  1111111111121      2366777777766 5554443320     0111      1


Q ss_pred             EEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc-----eeEEEeeCC-CCCcEEEEEcCCCeEEEEEccCCC
Q 020107          110 CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF-----ELWATSFDV-HQPHMVYTGSDDCKFSGWDIRESP  183 (331)
Q Consensus       110 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~  183 (331)
                      ....  .+..++++..++.|..+|..+++..-.........     .+..+.-.| ..+..++.++.++.+..+|.++++
T Consensus       183 ~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~  260 (376)
T 3q7m_A          183 APTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ  260 (376)
T ss_dssp             CCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC
T ss_pred             CcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc
Confidence            1111  24568888889999999998876522222111000     000011111 023567777889999999999987


Q ss_pred             ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107          184 FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN  263 (331)
Q Consensus       184 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  263 (331)
                      .......     .....+..   ++..++.++.++.|..+|..+++. +..........+...... +  +.++++..++
T Consensus       261 ~~w~~~~-----~~~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~-~--~~l~v~~~~g  328 (376)
T 3q7m_A          261 IMWKREL-----GSVNDFIV---DGNRIYLVDQNDRVMALTIDGGVT-LWTQSDLLHRLLTSPVLY-N--GNLVVGDSEG  328 (376)
T ss_dssp             EEEEECC-----CCEEEEEE---ETTEEEEEETTCCEEEEETTTCCE-EEEECTTTTSCCCCCEEE-T--TEEEEECTTS
T ss_pred             EEeeccC-----CCCCCceE---ECCEEEEEcCCCeEEEEECCCCcE-EEeecccCCCcccCCEEE-C--CEEEEEeCCC
Confidence            5544332     22344444   356788888899999999998643 322110111222222222 2  5666766677


Q ss_pred             cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107          264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~  323 (331)
                      .+..++...  ++.+.........+.......+          ..|+.++ .+|.|+.|+
T Consensus       329 ~l~~~d~~t--G~~~~~~~~~~~~~~~~~~~~~----------~~l~v~~-~~G~l~~~~  375 (376)
T 3q7m_A          329 YLHWINVED--GRFVAQQKVDSSGFQTEPVAAD----------GKLLIQA-KDGTVYSIT  375 (376)
T ss_dssp             EEEEEETTT--CCEEEEEECCTTCBCSCCEEET----------TEEEEEB-TTSCEEEEE
T ss_pred             eEEEEECCC--CcEEEEEecCCCcceeCCEEEC----------CEEEEEe-CCCEEEEEe
Confidence            766666554  6666666543333333222223          3667777 799999987

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.92  E-value=4.8e-07  Score=71.17  Aligned_cols=194  Identities=13%  Similarity=0.027  Sum_probs=125.4

Q ss_pred             EEEEEEcCCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc
Q 020107          108 CLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF  184 (331)
Q Consensus       108 v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  184 (331)
                      ...+.|++++ .|+.++.   ++.|+++|+.+++......+..+. ....+++.  ++.+.++.-.++.+.++|..+.+.
T Consensus        23 ~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           23 TQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             EEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred             cccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence            4688999886 4554432   689999999998763322222222 22345554  346666667889999999999887


Q ss_pred             eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec-CC---ceEEEEECCCCCCeEEEEE
Q 020107          185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL-GG---GVWRIKHHPFIPGLVLAAC  260 (331)
Q Consensus       185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~---~v~~~~~~~~~~~~~~~~~  260 (331)
                      +..+...  ....   ..+++ ++..++++..++.|.++|..+. +....+.... ..   .++.+.|. +  +.+.+..
T Consensus        99 ~~~i~~g--~~~g---~glt~-Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~-d--g~lyvn~  168 (266)
T 2iwa_A           99 IKNFTHQ--MKDG---WGLAT-DGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYI-N--GEVWANI  168 (266)
T ss_dssp             EEEEECC--SSSC---CEEEE-CSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-T--TEEEEEE
T ss_pred             EEEEECC--CCCe---EEEEE-CCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEE-C--CEEEEec
Confidence            7777651  0111   23455 5666666667899999999885 4344322221 11   36778888 5  4454554


Q ss_pred             -ecCcEEEEEEcCcccceeEEeecC-------------CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          261 -MHNGFAVVKVGGEKAEVLETYAKH-------------GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       261 -~~~~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                       ..+.+.+++...  ++.+..+.-.             .....+++|+|++.        ++++++. ....|.+-++..
T Consensus       169 ~~~~~V~vID~~t--g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~--------~lfVTgk-~~~~v~~i~l~~  237 (266)
T 2iwa_A          169 WQTDCIARISAKD--GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK--------RIFVTGK-LWPKLFEIKLHL  237 (266)
T ss_dssp             TTSSEEEEEETTT--CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT--------EEEEEET-TCSEEEEEEEEE
T ss_pred             CCCCeEEEEECCC--CcEEEEEECCCcccccccccccccCceEEEEEcCCCC--------EEEEECC-CCCeEEEEEEec
Confidence             456755566554  6777776521             12458999999986        7888888 888888887654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.91  E-value=5e-06  Score=69.68  Aligned_cols=254  Identities=11%  Similarity=0.056  Sum_probs=138.3

Q ss_pred             CCCcEEEEeccCcccceEEeEeee-------cCcE-eEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----Ccc
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMD-------TAGI-FDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSM  107 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~-------~~~v-~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~  107 (331)
                      .++.|..+|.++++..........       ...+ ..+..  .    +..+++++.++.+ .++..+++..     ...
T Consensus        61 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~  134 (376)
T 3q7m_A           61 RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--S----GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE  134 (376)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--E----TTEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--e----CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc
Confidence            588999999987762222211110       1122 22222  2    3367777777777 5555444321     001


Q ss_pred             EE-EEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccccee-----EEEeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107          108 CL-CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFEL-----WATSFDVHQPHMVYTGSDDCKFSGWDIRE  181 (331)
Q Consensus       108 v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  181 (331)
                      +. ....  .+..+++++.++.|..+|.++++.  +-.........     .....   .+..++.++.++.|..+|..+
T Consensus       135 ~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~t  207 (376)
T 3q7m_A          135 ALSRPVV--SDGLVLIHTSNGQLQALNEADGAV--KWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQ  207 (376)
T ss_dssp             CCSCCEE--ETTEEEEECTTSEEEEEETTTCCE--EEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTT
T ss_pred             eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcE--EEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCC
Confidence            10 0111  245788889999999999988864  32332211110     11121   135677788899999999999


Q ss_pred             CCceeeeecccCCC-cceEE---EEEec-CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeE
Q 020107          182 SPFKLAFQNSKIHK-MGVCC---IASIP-SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLV  256 (331)
Q Consensus       182 ~~~~~~~~~~~~~~-~~v~~---~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  256 (331)
                      ++............ ..+..   +...| ..+..++.++.++.+..+|.++++ .+..  .. ......+... +  +.+
T Consensus       208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~-~~w~--~~-~~~~~~~~~~-~--~~l  280 (376)
T 3q7m_A          208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ-IMWK--RE-LGSVNDFIVD-G--NRI  280 (376)
T ss_dssp             CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC-EEEE--EC-CCCEEEEEEE-T--TEE
T ss_pred             CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc-EEee--cc-CCCCCCceEE-C--CEE
Confidence            88665554311000 00000   00011 024567778889999999998864 3332  22 2234444443 2  566


Q ss_pred             EEEEecCcEEEEEEcCcccceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          257 LAACMHNGFAVVKVGGEKAEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ++++.++.+..++...  ++.+..... ....+...... +          ..|+.++ .+|.|+.+|..++..
T Consensus       281 ~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~-~----------~~l~v~~-~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          281 YLVDQNDRVMALTIDG--GVTLWTQSDLLHRLLTSPVLY-N----------GNLVVGD-SEGYLHWINVEDGRF  340 (376)
T ss_dssp             EEEETTCCEEEEETTT--CCEEEEECTTTTSCCCCCEEE-T----------TEEEEEC-TTSEEEEEETTTCCE
T ss_pred             EEEcCCCeEEEEECCC--CcEEEeecccCCCcccCCEEE-C----------CEEEEEe-CCCeEEEEECCCCcE
Confidence            6777777866666554  565555542 12222223322 2          3677777 799999999988754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.90  E-value=8.4e-07  Score=80.27  Aligned_cols=181  Identities=12%  Similarity=0.084  Sum_probs=113.8

Q ss_pred             EEEEcCCCCeEEEEecCC-------------------eEEEEEccccceeeeeeeeccc-------ceeEEEeeCCCCC-
Q 020107          110 CLEWNPSATSITVGLSDG-------------------SVSIVSVVESQLEVLQQWKAHE-------FELWATSFDVHQP-  162 (331)
Q Consensus       110 ~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~-  162 (331)
                      .++++|++..++++..++                   .|..+|.++++..-......|.       ....-+.... ++ 
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~  325 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGK  325 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTE
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCc
Confidence            567888999999887764                   5999999998753222222231       1111222222 44 


Q ss_pred             --cEEEEEcCCCeEEEEEccCCCceeeeecccC--------CCcce------------------------EEEEEecCCC
Q 020107          163 --HMVYTGSDDCKFSGWDIRESPFKLAFQNSKI--------HKMGV------------------------CCIASIPSDS  208 (331)
Q Consensus       163 --~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~v------------------------~~~~~~~~~~  208 (331)
                        ..++.++.+|.++++|.++++.+..+...+.        ...++                        ..++++| +.
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~  404 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QT  404 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CC
Confidence              6789999999999999999987655442110        00111                        1568888 66


Q ss_pred             CEEEEEecC-------------------------------------------CeEEEEEecCCCCCceeeeeecCCceEE
Q 020107          209 NTLLTGSYD-------------------------------------------EYLRVWDVRSISKPVNETSVCLGGGVWR  245 (331)
Q Consensus       209 ~~l~~~~~d-------------------------------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~  245 (331)
                      .++++...+                                           +.|..||+.++ +.+-+  ..+..++..
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~--~~~~~~~~~  481 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWS--VEHVSPWNG  481 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT-EEEEE--EEESSSCCC
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC-cEEee--cCCCCCCcC
Confidence            677765432                                           78999999986 33433  345555555


Q ss_pred             EEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-CCcceeeeeecCCCC
Q 020107          246 IKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-HGSLAYGADWQRGRS  298 (331)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~  298 (331)
                      ..+...+ +++++++.++.+++|+...  ++.+.++.. +.....-+.|..++.
T Consensus       482 g~~~~~g-~~v~~g~~dg~l~a~D~~t--G~~lw~~~~~~~~~~~p~~y~~~G~  532 (677)
T 1kb0_A          482 GTLTTAG-NVVFQGTADGRLVAYHAAT--GEKLWEAPTGTGVVAAPSTYMVDGR  532 (677)
T ss_dssp             CEEEETT-TEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cceEeCC-CEEEEECCCCcEEEEECCC--CceeeeeeCCCCcccCCEEEEeCCE
Confidence            5555555 6777777788877777766  688887773 323334456667774

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.85  E-value=2.7e-07  Score=76.70  Aligned_cols=226  Identities=10%  Similarity=-0.030  Sum_probs=123.3

Q ss_pred             eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-e-----cCcEeEEEEcCCCC
Q 020107            6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-D-----TAGIFDIKWSPVGG   79 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~   79 (331)
                      +.....+ .+.++|++   .++.++.+......-+..++.|.+||+.+.+ ....+.-+ .     ......++++|+  
T Consensus        62 i~vG~~P-~i~~spDg---~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-vv~~I~v~~~~~~~~g~~P~~ia~SpD--  134 (368)
T 1mda_H           62 SLGAFLS-LAVAGHSG---SDFALASTSFARSAKGKRTDYVEVFDPVTFL-PIADIELPDAPRFSVGPRVHIIGNCAS--  134 (368)
T ss_dssp             EEECTTC-EEEECTTS---SCEEEEEEEETTTTSSSEEEEEEEECTTTCC-EEEEEEETTSCSCCBSCCTTSEEECTT--
T ss_pred             EeCCCCC-ceEECCCC---CEEEEEcccccccccCCCCCEEEEEECCCCC-EEEEEECCCccccccCCCcceEEEcCC--
Confidence            3344445 78898887   5555554100000000136889999999986 44444221 0     123568999999  


Q ss_pred             CCCCeEEEEcCC--ccE-E--EecCCCcc-cCccE---------EEEEEcCC----------------------------
Q 020107           80 NAGPFLAQADAD--GGL-L--RDITGEKI-SSSMC---------LCLEWNPS----------------------------  116 (331)
Q Consensus        80 ~~~~~l~~~~~d--g~i-i--w~~~~~~~-~~~~v---------~~~~~~~~----------------------------  116 (331)
                        +++++++...  ..+ +  +|..+... ....+         .-+.++++                            
T Consensus       135 --Gk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v  212 (368)
T 1mda_H          135 --SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC  212 (368)
T ss_dssp             --SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred             --CCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeC
Confidence              8888888753  345 6  77754000 00000         00111122                            


Q ss_pred             ---------CCeEEEEecCCeEEEEEccccceeeeeeeec-------cc---ceeEEEeeCCCCCcEEEEE-c---C---
Q 020107          117 ---------ATSITVGLSDGSVSIVSVVESQLEVLQQWKA-------HE---FELWATSFDVHQPHMVYTG-S---D---  170 (331)
Q Consensus       117 ---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~---~~v~~~~~~~~~~~~l~~~-~---~---  170 (331)
                               +..++..+. +.|.+.|........+..+..       +.   .....++++| +++.++.+ .   .   
T Consensus       213 g~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~  290 (368)
T 1mda_H          213 SSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             CSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTT
T ss_pred             CCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCccc
Confidence                     222222222 445555554322111111110       00   1111267888 55555543 3   2   


Q ss_pred             --CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC-EEEEEe-cCCeEEEEEecCCCCCceeeeeecCCceEEE
Q 020107          171 --DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN-TLLTGS-YDEYLRVWDVRSISKPVNETSVCLGGGVWRI  246 (331)
Q Consensus       171 --dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  246 (331)
                        ++.+.++|+.+.+.+..+..    ......|.|+| +++ ++++.. .++.|.++|+.+. +.+..  ..-......+
T Consensus       291 ~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~-kvv~~--I~vg~~P~~i  362 (368)
T 1mda_H          291 AAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASD-QDQSS--VELDKGPESL  362 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCEE----EEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSC-EEEEE--CCCCSCCCEE
T ss_pred             ccCCCEEEEECCCCeEEEEEEC----CCCcceEEECC-CCCEEEEEccCCCCeEEEEECCCC-cEEEE--EECCCCCCEE
Confidence              23566999999988777776    33688999999 776 566666 5999999999985 55544  3444555666


Q ss_pred             EECC
Q 020107          247 KHHP  250 (331)
Q Consensus       247 ~~~~  250 (331)
                      ++.+
T Consensus       363 ~~~~  366 (368)
T 1mda_H          363 SVQN  366 (368)
T ss_dssp             ECCC
T ss_pred             Eeec
Confidence            6654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.79  E-value=6.5e-07  Score=73.53  Aligned_cols=210  Identities=12%  Similarity=-0.018  Sum_probs=125.4

Q ss_pred             eEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107           84 FLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  156 (331)
                      .|..++.++.+ .++.. ++.      ....+.++...+++. +.+++.++.|..+|.. ++.  ...+......+.++.
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~--~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE--KWRFKTNDAITSAAS  183 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCE--EEEEECSSCCCSCCE
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE--eEEEecCCCceeeeE
Confidence            56667777766 55554 221      122334455555555 6778888999999988 543  333333444566677


Q ss_pred             eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107          157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  236 (331)
                      ..+ ++. +..++  +.|..+| .+++....+..   ....+.++...+ ++ .|..++.++.|..+|.. + ..+.. .
T Consensus       184 ~d~-~g~-l~v~t--~~l~~~d-~~g~~~~~~~~---~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~~-g-~~~~~-~  250 (330)
T 3hxj_A          184 IGK-DGT-IYFGS--DKVYAIN-PDGTEKWNFYA---GYWTVTRPAISE-DG-TIYVTSLDGHLYAINPD-G-TEKWR-F  250 (330)
T ss_dssp             ECT-TCC-EEEES--SSEEEEC-TTSCEEEEECC---SSCCCSCCEECT-TS-CEEEEETTTEEEEECTT-S-CEEEE-E
T ss_pred             EcC-CCE-EEEEe--CEEEEEC-CCCcEEEEEcc---CCcceeceEECC-CC-eEEEEcCCCeEEEECCC-C-CEeEE-e
Confidence            664 545 44445  8899999 66654444443   445677788876 55 45666777888888743 2 33332 1


Q ss_pred             eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC
Q 020107          237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD  316 (331)
Q Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d  316 (331)
                      ......+..+...++  +.+.+++.++++..++  . +++.+..+......+.++...+++          .|..++ .+
T Consensus       251 ~~~~~~~~~~~~~~~--g~l~v~t~~ggl~~~d--~-~g~~~~~~~~~~~~~~~~~~d~~g----------~l~~gt-~~  314 (330)
T 3hxj_A          251 KTGKRIESSPVIGNT--DTIYFGSYDGHLYAIN--P-DGTEKWNFETGSWIIATPVIDENG----------TIYFGT-RN  314 (330)
T ss_dssp             ECSSCCCSCCEECTT--SCEEEECTTCEEEEEC--T-TSCEEEEEECSSCCCSCCEECTTC----------CEEEEC-TT
T ss_pred             eCCCCccccceEcCC--CeEEEecCCCCEEEEC--C-CCcEEEEEEcCCccccceEEcCCC----------EEEEEc-CC
Confidence            222333444555555  5566666666755554  3 356666665555566777776776          455566 79


Q ss_pred             CeEEEEcCCCc
Q 020107          317 RLLRIWMPESD  327 (331)
Q Consensus       317 ~~i~iW~~~~~  327 (331)
                      |.+++...+..
T Consensus       315 G~~~~~~~~~~  325 (330)
T 3hxj_A          315 GKFYALFNLEH  325 (330)
T ss_dssp             SCEEEEEC---
T ss_pred             CeEEEEecccc
Confidence            99999876544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.76  E-value=7.3e-05  Score=69.21  Aligned_cols=254  Identities=9%  Similarity=0.039  Sum_probs=152.3

Q ss_pred             CCcEEEEeccCcccceEEeEee-------ecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCc-------------
Q 020107           43 NGSISLFNVNAEEKNLELLYRM-------DTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEK-------------  102 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~-------------  102 (331)
                      ++-+.+|+..+..  +......       ....|.++...++    +.+.+ |+.+|..+++..+..             
T Consensus       234 ~~Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~d~~----g~lWi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~~  306 (795)
T 4a2l_A          234 GAGLFLINPKTKE--IKNYLHSPSNPKSISSNYIRSLAMDSQ----NRLWI-GTFNDLNIYHEGTDSFASYSSNPVENGS  306 (795)
T ss_dssp             SSCEEEEETTTTE--EEEECCCTTCTTSCSCSBEEEEEECTT----SCEEE-EESSCEEEEETTTTEEEEECCCTTSTTS
T ss_pred             CCCeEEEeCCCCe--EEEeecCCCCccccCCCeEEEEEEcCC----CCEEE-EeCChhheEcCCCCeEEEEecCCCCCCC
Confidence            4458888876653  3333211       1345999988877    55444 444565566654332             


Q ss_pred             ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee----cccceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107          103 ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK----AHEFELWATSFDVHQPHMVYTGSDDCKFSGWD  178 (331)
Q Consensus       103 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  178 (331)
                      .....|.++...++|. |-+|+.++-|..++..++.........    -....|.++...+ +++ |..|+.++-|..||
T Consensus       307 l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~  383 (795)
T 4a2l_A          307 LSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYN  383 (795)
T ss_dssp             CSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEEC
T ss_pred             CCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEc
Confidence            2346789999888876 556777777889988765542222111    0234688888875 444 55677777899999


Q ss_pred             ccCCCceeeeecc-----cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee----ecCCceEEEEEC
Q 020107          179 IRESPFKLAFQNS-----KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV----CLGGGVWRIKHH  249 (331)
Q Consensus       179 ~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~  249 (331)
                      ..+++........     ......|.++...+ ++.+|..|+.++-|..||.++..  ......    .....|.++...
T Consensus       384 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d  460 (795)
T 4a2l_A          384 PITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQ--VENFNQRNSQLVNENVYAILPD  460 (795)
T ss_dssp             TTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCC--EEEECTTTSCCSCSCEEEEEEC
T ss_pred             CCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCc--EEEeecCCCCcCCCeeEEEEEC
Confidence            8876532221110     01245789999887 77757777777789999987642  222111    124578999988


Q ss_pred             CCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-------CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107          250 PFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-------HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW  322 (331)
                      +++ . +.+++. +++..++...  ++ ...+..       ....|.++...+++          .|..++ . +-|..|
T Consensus       461 ~~g-~-lwigt~-~Gl~~~~~~~--~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g----------~lWigt-~-~Gl~~~  522 (795)
T 4a2l_A          461 GEG-N-LWLGTL-SALVRFNPEQ--RS-FTTIEKEKDGTPVVSKQITTLFRDSHK----------RLWIGG-E-EGLSVF  522 (795)
T ss_dssp             SSS-C-EEEEES-SCEEEEETTT--TE-EEECCBCTTCCBCCCCCEEEEEECTTC----------CEEEEE-S-SCEEEE
T ss_pred             CCC-C-EEEEec-CceeEEeCCC--Ce-EEEccccccccccCCceEEEEEECCCC----------CEEEEe-C-CceEEE
Confidence            874 4 444444 6766666443  22 222221       23568888888776          344455 4 557777


Q ss_pred             cCCCc
Q 020107          323 MPESD  327 (331)
Q Consensus       323 ~~~~~  327 (331)
                      +..++
T Consensus       523 ~~~~~  527 (795)
T 4a2l_A          523 KQEGL  527 (795)
T ss_dssp             EEETT
T ss_pred             eCCCC
Confidence            76543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=3.3e-06  Score=66.42  Aligned_cols=190  Identities=5%  Similarity=-0.027  Sum_probs=121.0

Q ss_pred             EeEEEEcCCCCCCCCeEEEEcC--CccE-EEecCCCcccC-----c--cEEEEEEcCCCCeEEEEec-CCeEEEEEcccc
Q 020107           69 IFDIKWSPVGGNAGPFLAQADA--DGGL-LRDITGEKISS-----S--MCLCLEWNPSATSITVGLS-DGSVSIVSVVES  137 (331)
Q Consensus        69 v~~~~~~~~~~~~~~~l~~~~~--dg~i-iw~~~~~~~~~-----~--~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~  137 (331)
                      ...+.|+|+    +.++++.+.  ++.+ +.|+.+++...     .  ....+++  +++.|+.+.. ++.+.++|..+.
T Consensus        23 ~~Gl~~~~d----g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           23 TQGLVYAEN----DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             EEEEEECST----TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTCSEEEEEETTTT
T ss_pred             cccEEEeCC----CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEecCCEEEEEECCCC
Confidence            679999997    655555543  4566 88887765421     1  1123444  3556666554 899999999877


Q ss_pred             ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC---cceEEEEEecCCCCEEEEE
Q 020107          138 QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK---MGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~  214 (331)
                      +.  +..+......-..++  + +++.++.+..++.|.++|..+.+....+.... ..   ..++.+.|.  ++.+.+..
T Consensus        97 ~v--~~~i~~g~~~g~glt--~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~-~~~p~~~~nele~~--dg~lyvn~  168 (266)
T 2iwa_A           97 SN--IKNFTHQMKDGWGLA--T-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKY-NGHRVIRLNELEYI--NGEVWANI  168 (266)
T ss_dssp             EE--EEEEECCSSSCCEEE--E-CSSSEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE--TTEEEEEE
T ss_pred             cE--EEEEECCCCCeEEEE--E-CCCEEEEECCCCeEEEEECCCCcEEEEEEECC-CCcccccceeEEEE--CCEEEEec
Confidence            54  555542212223344  4 44555555678999999999988766666411 11   236788887  46555555


Q ss_pred             ecCCeEEEEEecCCCCCceeeeee-c-----------CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          215 SYDEYLRVWDVRSISKPVNETSVC-L-----------GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~~~~-~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      ..++.|.+.|..++ +.+..+... .           ......|+|+|+++.++++....+.+..+++...
T Consensus       169 ~~~~~V~vID~~tg-~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          169 WQTDCIARISAKDG-TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTSSEEEEEETTTC-CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCCCeEEEEECCCC-cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            56889999999986 444442221 0           1356899999998566666667788777777653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.75  E-value=4.7e-05  Score=62.12  Aligned_cols=205  Identities=9%  Similarity=-0.064  Sum_probs=120.2

Q ss_pred             ccEEEEEEcCCCCeEEEEec-CCeEEEEEccc----cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc
Q 020107          106 SMCLCLEWNPSATSITVGLS-DGSVSIVSVVE----SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR  180 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  180 (331)
                      .....++|++.++.|+.+.. .+.|..+++..    ...  ...+...-.....+++.+.+++++++-...+.|.+.|+.
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~--~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C--EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc--EEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            34678999987776666554 68999999875    221  112222223457888876456666776778999999987


Q ss_pred             CCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107          181 ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       181 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  259 (331)
                      .......+..   .......++++|..+.++++.... +.|...++...  ....+....-.....++++|++..++++-
T Consensus       108 g~~~~~~~~~---~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~--~~~~~~~~~~~~P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          108 GVKRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTENIQWPNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             SSSEEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEC---CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC--CeEEEEECCCCCceEEEEeccCCEEEEEE
Confidence            5433222322   235678999998344444444333 67888887642  22221122335678999998874455554


Q ss_pred             EecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ...+.|..+++.....+.+...........++++.. +         .++++-. ..+.|..++..++.
T Consensus       183 ~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~---------~ly~~d~-~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          183 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-D---------KVFWTDI-INEAIFSANRLTGS  240 (316)
T ss_dssp             TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-T---------EEEEEET-TTTEEEEEETTTCC
T ss_pred             CCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-C---------EEEEEEC-CCCeEEEEeCCCCc
Confidence            455666666665322222222211223456777753 3         4666665 78889888876553

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.71  E-value=7.4e-05  Score=61.87  Aligned_cols=222  Identities=6%  Similarity=-0.054  Sum_probs=128.7

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE-cCCccE-EEecCCCccc------CccEEEEEEc
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA-DADGGL-LRDITGEKIS------SSMCLCLEWN  114 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~dg~i-iw~~~~~~~~------~~~v~~~~~~  114 (331)
                      ...|+..+++...  ...+.. ....+..++|.+.    ...|..+ ...+.| .+++.+....      ......+++.
T Consensus        52 ~~~I~~i~~~g~~--~~~~~~-~~~~~~~l~~d~~----~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd  124 (349)
T 3v64_C           52 RIDIRQVLPHRSE--YTLLLN-NLENAIALDFHHR----RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD  124 (349)
T ss_dssp             BSCEEEECTTSCC--EEEEEC-SCSCEEEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEE
T ss_pred             ccceEEEeCCCCe--eEEeec-CCCceEEEEEecc----ccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEe
Confidence            5668888887653  333322 2345789999987    4455544 455566 5665544321      1234578888


Q ss_pred             CCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-CeEEEEEccCCCceeeeeccc
Q 020107          115 PSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-CKFSGWDIRESPFKLAFQNSK  192 (331)
Q Consensus       115 ~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~  192 (331)
                      +.+..|+.+ ...+.|.+.+++....  ...+.........++++|.++.++++-... +.|..+++...........  
T Consensus       125 ~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~--  200 (349)
T 3v64_C          125 WVHDKLYWTDSGTSRIEVANLDGAHR--KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT--  200 (349)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSC--EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS--
T ss_pred             cCCCeEEEEcCCCCeEEEEcCCCCce--EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC--
Confidence            766665554 4478899999875432  112222334568999998666666666555 8899998875432222221  


Q ss_pred             CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          193 IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       193 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                       .-.....|+++|..+.+.++-...+.|..+|+....  ...+..........+++..+  .++++-...+.  +..+..
T Consensus       201 -~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~--~~~~~~~~~~~P~giav~~~--~ly~td~~~~~--V~~~~~  273 (349)
T 3v64_C          201 -HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH--RKAVISQGLPHPFAITVFED--SLYWTDWHTKS--INSANK  273 (349)
T ss_dssp             -SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSSEEEEEEETT--EEEEEETTTTE--EEEEET
T ss_pred             -CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc--eEEEEeCCCCCceEEEEECC--EEEEecCCCCe--EEEEEc
Confidence             244578999998444455555567889999987532  22212223445677777332  44444444455  444443


Q ss_pred             cccceeEEee
Q 020107          273 EKAEVLETYA  282 (331)
Q Consensus       273 ~~~~~~~~~~  282 (331)
                      ..++....+.
T Consensus       274 ~~G~~~~~i~  283 (349)
T 3v64_C          274 FTGKNQEIIR  283 (349)
T ss_dssp             TTCCSCEEEE
T ss_pred             cCCCccEEec
Confidence            3344444443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.70  E-value=5.5e-05  Score=63.60  Aligned_cols=233  Identities=6%  Similarity=-0.055  Sum_probs=132.4

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE-EEcCCccE-EEecCCCcc------cCccEEEEEEc
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA-QADADGGL-LRDITGEKI------SSSMCLCLEWN  114 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~  114 (331)
                      ...|+.+++....  ...+.. ....+..++|.+.    ...|. +-...+.| .+++.+...      .......+++.
T Consensus        95 ~~~I~~i~~~~~~--~~~~~~-~~~~~~gl~~d~~----~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd  167 (386)
T 3v65_B           95 RIDIRQVLPHRSE--YTLLLN-NLENAIALDFHHR----RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD  167 (386)
T ss_dssp             BSCEEEECTTSCC--CEEEEC-SCSCEEEEEEETT----TTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEE
T ss_pred             CccceeeccCCCc--EEEEec-CCCccEEEEEecC----CCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEE
Confidence            5678888887654  333322 3345789999987    44454 44455556 566554432      11234567888


Q ss_pred             CCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-CeEEEEEccCCCceeeeeccc
Q 020107          115 PSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-CKFSGWDIRESPFKLAFQNSK  192 (331)
Q Consensus       115 ~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~  192 (331)
                      +.+..|+.+ ...+.|.+.+++....  ...+.........++++|.++.++++-... +.|..+++...........  
T Consensus       168 ~~~g~lY~~d~~~~~I~~~~~dg~~~--~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~--  243 (386)
T 3v65_B          168 WVHDKLYWTDSGTSRIEVANLDGAHR--KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT--  243 (386)
T ss_dssp             TTTTEEEEEETTTTEEEECBTTSCSC--EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS--
T ss_pred             eCCCeEEEEcCCCCeEEEEeCCCCce--EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC--
Confidence            766665554 4467888888875432  122222334578899998566666665555 7888888875432222222  


Q ss_pred             CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          193 IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       193 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                       .-.....|+++|..+.+.++-...+.|..+|+... . ...+..........|++..+  .++++....+.  |..+..
T Consensus       244 -~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~-~~~~~~~~~~~P~giav~~~--~ly~td~~~~~--V~~~~~  316 (386)
T 3v65_B          244 -HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-H-RKAVISQGLPHPFAITVFED--SLYWTDWHTKS--INSANK  316 (386)
T ss_dssp             -SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-S-CEEEECSSCSSEEEEEEETT--EEEEEETTTTE--EEEEET
T ss_pred             -CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-e-eEEEEECCCCCceEEEEECC--EEEEeeCCCCe--EEEEEC
Confidence             24457899999834555555556788999998753 2 22212223445677777332  45544444444  444443


Q ss_pred             cccceeEEeecCCcceeeeee
Q 020107          273 EKAEVLETYAKHGSLAYGADW  293 (331)
Q Consensus       273 ~~~~~~~~~~~h~~~v~~~~~  293 (331)
                      ..++....+........++++
T Consensus       317 ~~G~~~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          317 FTGKNQEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             TTCCSCEEEECSCSCCCCEEE
T ss_pred             CCCcceEEEccCCCCCceEEE
Confidence            334444444433233344433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.67  E-value=4.3e-05  Score=62.53  Aligned_cols=230  Identities=8%  Similarity=0.003  Sum_probs=132.0

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-------------------ecCcEeE
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-------------------DTAGIFD   71 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-------------------~~~~v~~   71 (331)
                      .+..+++.+.+   +++.++.          .++.|..|+..+..  +..+...                   ....+..
T Consensus        20 ~p~~i~~d~~g---~~l~v~~----------~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~g   84 (322)
T 2fp8_A           20 APNSFTFDSTN---KGFYTSV----------QDGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYD   84 (322)
T ss_dssp             CCCCEECCTTC---SSEEEEC----------TTSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEE
T ss_pred             CceEEEEcCCC---CEEEEEc----------CCCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCce
Confidence            46677877654   7677776          58899999877643  3322110                   1134788


Q ss_pred             EEEcC-CCCCCCCeEEEEcCCccEEEecCCCcc----------cCccEEEEEEcC-CCCeEEEEec--------------
Q 020107           72 IKWSP-VGGNAGPFLAQADADGGLLRDITGEKI----------SSSMCLCLEWNP-SATSITVGLS--------------  125 (331)
Q Consensus        72 ~~~~~-~~~~~~~~l~~~~~dg~iiw~~~~~~~----------~~~~v~~~~~~~-~~~~l~~~~~--------------  125 (331)
                      +++.+ +    +.++++....+...++..+...          .......+++.+ +|+..++-..              
T Consensus        85 i~~~~~~----g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~  160 (322)
T 2fp8_A           85 ISYNLQN----NQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT  160 (322)
T ss_dssp             EEEETTT----TEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred             EEEcCCC----CcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence            99998 5    4444443444422566553321          112467899999 8876555432              


Q ss_pred             ---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCc-EEEEEcCCCeEEEEEccCCCc--eeeeecccCCCcceE
Q 020107          126 ---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH-MVYTGSDDCKFSGWDIRESPF--KLAFQNSKIHKMGVC  199 (331)
Q Consensus       126 ---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~  199 (331)
                         ++.|..+|..+++....   .........++++| +++ ++++-...+.|.++++.....  ...+..   ... ..
T Consensus       161 ~~~~g~v~~~d~~~~~~~~~---~~~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~  232 (322)
T 2fp8_A          161 SDKTGRLIKYDPSTKETTLL---LKELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PG  232 (322)
T ss_dssp             TCCCEEEEEEETTTTEEEEE---EEEESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EE
T ss_pred             cCCCceEEEEeCCCCEEEEe---ccCCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CC
Confidence               36788888876543222   11123356789998 666 445556678999999875321  222222   123 78


Q ss_pred             EEEEecCCCCEEEEEec----------CCeEEEEEecCCCCCceeeeeec---CCceEEEEECCCCCCeEEEEEecCcEE
Q 020107          200 CIASIPSDSNTLLTGSY----------DEYLRVWDVRSISKPVNETSVCL---GGGVWRIKHHPFIPGLVLAACMHNGFA  266 (331)
Q Consensus       200 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~  266 (331)
                      .+++.+ ++++.++...          .+.|..+|..  .+.+..+....   -..+..+++. ++ .++++....+.+.
T Consensus       233 gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~  307 (322)
T 2fp8_A          233 NIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVG  307 (322)
T ss_dssp             EEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEE
T ss_pred             CeEECC-CCCEEEEecCcccccccCCCccEEEEECCC--CCEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceE
Confidence            899999 8877666544          4567777764  23333311121   1345666663 32 4454444566666


Q ss_pred             EEEEcC
Q 020107          267 VVKVGG  272 (331)
Q Consensus       267 ~~~~~~  272 (331)
                      .+++..
T Consensus       308 ~~~~~~  313 (322)
T 2fp8_A          308 ILVYDK  313 (322)
T ss_dssp             EEEC--
T ss_pred             EEeccc
Confidence            666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.66  E-value=5.2e-06  Score=64.62  Aligned_cols=180  Identities=17%  Similarity=0.137  Sum_probs=111.8

Q ss_pred             EEEEEEcCCCCeEEEEecCC--eEEEEEccccceeeeeeeecccce-eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc
Q 020107          108 CLCLEWNPSATSITVGLSDG--SVSIVSVVESQLEVLQQWKAHEFE-LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF  184 (331)
Q Consensus       108 v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  184 (331)
                      ...+.|+ ++.+..+.+.+|  .|+++|+++++.  +..+...... ...++..  +..+.++.-.++.+.++|..+.+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv--~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT--LQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE--EEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcE--EEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence            4678887 555555555555  899999999876  3333322211 1234443  446666666799999999999988


Q ss_pred             eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee-cC---CceEEEEECCCCCCeEEEEE
Q 020107          185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC-LG---GGVWRIKHHPFIPGLVLAAC  260 (331)
Q Consensus       185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~~~~~~~  260 (331)
                      +..+.. ....   ..++  + ++..|+....++.|.++|..+. +.+..+... ..   ..++.+.|. +  +.+.+..
T Consensus       120 ~~ti~~-~~eG---~glt--~-dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~--G~lyan~  188 (262)
T 3nol_A          120 VRSFNY-DGEG---WGLT--H-NDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-D--GEIFANV  188 (262)
T ss_dssp             EEEEEC-SSCC---CCEE--E-CSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-T--TEEEEEE
T ss_pred             EEEEEC-CCCc---eEEe--c-CCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-C--CEEEEEE
Confidence            888876 2111   2333  4 5666666666788999999885 434432222 12   234567776 4  4455555


Q ss_pred             -ecCcEEEEEEcCcccceeEEeecC------------CcceeeeeecCCCCcccccccCcEEEEee
Q 020107          261 -MHNGFAVVKVGGEKAEVLETYAKH------------GSLAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       261 -~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                       ..+.  +..++..+++.+..+.-.            ....++++|+|+..        ++++||-
T Consensus       189 w~~~~--I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~--------~lfVTGK  244 (262)
T 3nol_A          189 WQTNK--IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH--------RLFVTGK  244 (262)
T ss_dssp             TTSSE--EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT--------EEEEEET
T ss_pred             ccCCe--EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC--------EEEEECC
Confidence             4565  555555557777776531            13558899999885        6666664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.65  E-value=7.9e-05  Score=62.63  Aligned_cols=202  Identities=8%  Similarity=-0.080  Sum_probs=120.7

Q ss_pred             ccEEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc
Q 020107          106 SMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF  184 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  184 (331)
                      ..+..++|++.+..|+.+. ..+.|..+++.......  .+.........+++.+..+.++++-...+.|.+.++.....
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE--EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE--EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            4567899998777666554 57889999988654322  22222234567788765667777777788999998875443


Q ss_pred             eeeeecccCCCcceEEEEEecCCCCEEEEEecC-CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107          185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN  263 (331)
Q Consensus       185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  263 (331)
                      ...+..   .-.....|+++|..+.++++-... +.|..+++...  ....+....-.....|+++|++..++++-...+
T Consensus       194 ~~l~~~---~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~  268 (386)
T 3v65_B          194 KVLLWQ---SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH  268 (386)
T ss_dssp             EEEECS---SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred             EEeecC---CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC--CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC
Confidence            322222   335678999998444445554444 67888887653  222212233345789999987644555544455


Q ss_pred             cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .|..+++...  .....+........++++.. +         .++++-. ..+.|..++..++
T Consensus       269 ~I~~~d~dG~--~~~~~~~~~~~~P~giav~~-~---------~ly~td~-~~~~V~~~~~~~G  319 (386)
T 3v65_B          269 VIERANLDGS--HRKAVISQGLPHPFAITVFE-D---------SLYWTDW-HTKSINSANKFTG  319 (386)
T ss_dssp             EEEEECTTSC--SCEEEECSSCSSEEEEEEET-T---------EEEEEET-TTTEEEEEETTTC
T ss_pred             EEEEEeCCCC--eeEEEEECCCCCceEEEEEC-C---------EEEEeeC-CCCeEEEEECCCC
Confidence            5444444322  22222222334556777733 3         4666655 7888888885444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.64  E-value=4.9e-06  Score=64.78  Aligned_cols=180  Identities=10%  Similarity=0.046  Sum_probs=114.0

Q ss_pred             EEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceee
Q 020107          108 CLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLA  187 (331)
Q Consensus       108 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  187 (331)
                      ...+.|+ ++.+..+.+.+|.|+++|+++++..... +.. ..-...+++.  +..+.++.-.++.+.+||..+.+.+..
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            4577776 3455566667889999999998763333 332 1112335554  446666677899999999999988888


Q ss_pred             eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee-ecCC---ceEEEEECCCCCCeEEEEE-ec
Q 020107          188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV-CLGG---GVWRIKHHPFIPGLVLAAC-MH  262 (331)
Q Consensus       188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~---~v~~~~~~~~~~~~~~~~~-~~  262 (331)
                      +.. .+.   -..++  + ++..|+.+..++.|.++|..+. +.+..+.. ....   .++.+.|. +  +.+.+.. ..
T Consensus       132 i~~-~~e---GwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-d--G~lyanvw~s  200 (268)
T 3nok_A          132 TRY-SGE---GWGLC--Y-WNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-N--GVIYANIWHS  200 (268)
T ss_dssp             EEC-SSC---CCCEE--E-ETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-T--TEEEEEETTC
T ss_pred             EeC-CCc---eeEEe--c-CCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-C--CEEEEEECCC
Confidence            776 212   23444  4 5666666667899999999886 33433222 2222   34667777 4  4455554 45


Q ss_pred             CcEEEEEEcCcccceeEEeecC-------------CcceeeeeecCCCCcccccccCcEEEEee
Q 020107          263 NGFAVVKVGGEKAEVLETYAKH-------------GSLAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                      +.  +..+...+++.+..+.-.             ....+++++.|+..        ++++||-
T Consensus       201 ~~--I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~--------rlfVTGK  254 (268)
T 3nok_A          201 SD--VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG--------RIFMTGK  254 (268)
T ss_dssp             SE--EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC--------CEEEEET
T ss_pred             Ce--EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC--------EEEEeCC
Confidence            55  444555556777776521             13568899999875        6777764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.62  E-value=0.0001  Score=59.80  Aligned_cols=217  Identities=12%  Similarity=0.003  Sum_probs=122.7

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----cCccEEEEEEcCCCCeEEEEecC-C-eEEEEEccccce
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----SSSMCLCLEWNPSATSITVGLSD-G-SVSIVSVVESQL  139 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-g-~i~i~d~~~~~~  139 (331)
                      .....++|.++    +.++++-..++.+ .++......    .......+++.++++++++.... + .|..++..+++.
T Consensus        32 ~~pegia~~~~----g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           32 TFLENLASAPD----GTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CCEEEEEECTT----SCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcceEEECCC----CCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            45778999998    7777777677777 666554321    13457889999999865554332 2 477777777765


Q ss_pred             eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeee------cccCCCcceEEEEEecCCCCEE-
Q 020107          140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQ------NSKIHKMGVCCIASIPSDSNTL-  211 (331)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~------~~~~~~~~v~~~~~~~~~~~~l-  211 (331)
                      ..+..+. .......++..+ ++..+++-..++.|..+|..+++. .....      .....-.....|  +| ++..| 
T Consensus       108 ~~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~ly  182 (306)
T 2p4o_A          108 ETLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLY  182 (306)
T ss_dssp             EEEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEE
T ss_pred             EEEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEE
Confidence            4333322 112233444443 445555555688999999865421 11000      000011234555  77 66554 


Q ss_pred             EEEecCCeEEEEEecCCCCC-ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE--EeecCCcce
Q 020107          212 LTGSYDEYLRVWDVRSISKP-VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE--TYAKHGSLA  288 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v  288 (331)
                      ++-...+.|..||+...... .... .........+++.+++ .++++....+.+.+++  .. ++...  .+.......
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~-~~~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~--~~-G~~~~~~~~~~~~~~p  257 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEI-FVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIA--PD-RSTTIIAQAEQGVIGS  257 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEE-EEESCCCSSEEEBTTC-CEEEECBTTCCEEEEC--TT-CCEEEEECGGGTCTTE
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEE-EeccCCCCCeEECCCC-CEEEEeCCCCeEEEEC--CC-CCEEEEeecccccCCc
Confidence            55556789999998752111 1111 1112346678999986 5555555566755544  32 44422  233233567


Q ss_pred             eeeeec---CCC
Q 020107          289 YGADWQ---RGR  297 (331)
Q Consensus       289 ~~~~~~---~~~  297 (331)
                      ++++|.   |++
T Consensus       258 ~~~a~~g~~~d~  269 (306)
T 2p4o_A          258 TAVAFGQTEGDC  269 (306)
T ss_dssp             EEEEECCSTTTT
T ss_pred             eEEEEecccCCC
Confidence            899998   776

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.61  E-value=2.3e-06  Score=74.45  Aligned_cols=192  Identities=11%  Similarity=0.029  Sum_probs=128.0

Q ss_pred             CCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEee-C-CCCCcEEEEEc------------------CCCe
Q 020107          115 PSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSF-D-VHQPHMVYTGS------------------DDCK  173 (331)
Q Consensus       115 ~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~l~~~~------------------~dg~  173 (331)
                      +||+++++... ++.|.+.|+.+.+...+..+. .......+++ . | ++.++++++                  .++.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-CCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCce
Confidence            37788777665 678999999987653333443 2334778887 4 7 566666663                  3468


Q ss_pred             EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC-----------------------------------
Q 020107          174 FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-----------------------------------  218 (331)
Q Consensus       174 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----------------------------------  218 (331)
                      +.+.|..+.+....+..    ......++++| +++++++.+.+.                                   
T Consensus       177 vtvID~~t~~v~~qI~V----gg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLV----SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEEETTTTEEEEEEEE----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             EEEEECCCCeEEEEEEe----CCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            99999998876666655    12446677899 888888887553                                   


Q ss_pred             ---eEEEEEecC--CCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc----------cceeEEeec
Q 020107          219 ---YLRVWDVRS--ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK----------AEVLETYAK  283 (331)
Q Consensus       219 ---~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~  283 (331)
                         .|.+.|.++  ....+..  ..-......+.++||++..+++....+.+.++++....          ........ 
T Consensus       252 ~i~~V~VID~~~~~~~~~~~~--Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-  328 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSLFTRY--IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-  328 (595)
T ss_dssp             EETTEEEEECSGGGCCSSEEE--EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-
T ss_pred             EECcEEEEeCcccCCceeEEE--EecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-
Confidence               366777765  2211223  34455678899999985555555578888999988531          11233332 


Q ss_pred             CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      -......++|+|++         ...++.- .|++|.+||+++
T Consensus       329 vG~gP~h~aF~~dG---------~aY~t~~-ldsqV~kwdi~~  361 (595)
T 1fwx_A          329 LGLGPLHTAFDGRG---------NAYTSLF-LDSQVVKWNIED  361 (595)
T ss_dssp             CCSCEEEEEECTTS---------EEEEEET-TTTEEEEEEHHH
T ss_pred             CCCCcceEEECCCC---------eEEEEEe-cCCcEEEEEhhH
Confidence            23456789999998         4555555 899999999876

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.60  E-value=0.00039  Score=64.34  Aligned_cols=249  Identities=12%  Similarity=0.155  Sum_probs=148.3

Q ss_pred             cEEEEeccCcccceEEeEee-------ecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------------cc
Q 020107           45 SISLFNVNAEEKNLELLYRM-------DTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------------IS  104 (331)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------------~~  104 (331)
                      -|.+|+.....  +..+...       ....|.++...++    +.+ -.|+.++-+ .++.....            ..
T Consensus       283 Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~----g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~  355 (795)
T 4a2l_A          283 DLNIYHEGTDS--FASYSSNPVENGSLSQRSVRSIFMDSQ----GGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLS  355 (795)
T ss_dssp             CEEEEETTTTE--EEEECCCTTSTTSCSSSCEEEEEECTT----SCE-EEEESSSCEEEECGGGGSSEEECCCTTSSSCS
T ss_pred             hhheEcCCCCe--EEEEecCCCCCCCCCCCcEEEEEEeCC----cCE-EEEECCCCeEEeCCCcccceEEcCCCCCCCCC
Confidence            58888876653  3333211       2346999988887    554 445554444 55543321            23


Q ss_pred             CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee------cccceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107          105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK------AHEFELWATSFDVHQPHMVYTGSDDCKFSGWD  178 (331)
Q Consensus       105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  178 (331)
                      ...|.++...+++. |-+|+.++-|..|+..+++......-.      .....|.++...+ ++..|..|+.++-|..+|
T Consensus       356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEE
T ss_pred             CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEe
Confidence            45689998888776 556777778999998876543221110      1235688888875 556466677777899999


Q ss_pred             ccCCCceeeeec--ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee------ecCCceEEEEECC
Q 020107          179 IRESPFKLAFQN--SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV------CLGGGVWRIKHHP  250 (331)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~~  250 (331)
                      ..+++.. .+..  .......|.++...+ ++.+.+ |+.+ -+.+||..+. + ......      .....|.++...+
T Consensus       434 ~~~~~~~-~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~i~~d~  507 (795)
T 4a2l_A          434 RNSGQVE-NFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQR-S-FTTIEKEKDGTPVVSKQITTLFRDS  507 (795)
T ss_dssp             TTTCCEE-EECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETTTT-E-EEECCBCTTCCBCCCCCEEEEEECT
T ss_pred             CCCCcEE-EeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCCCC-e-EEEccccccccccCCceEEEEEECC
Confidence            9877532 2221  011346789999887 666544 4444 4888887753 1 221111      1235688999888


Q ss_pred             CCCCeEEEEEecCcEEEEEEcCcccceeEEee-------cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107          251 FIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-------KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~  323 (331)
                      ++ .+++ ++. +++..++....  +.  .+.       .....|.++...+++         .+.+ ++ .. -|..||
T Consensus       508 ~g-~lWi-gt~-~Gl~~~~~~~~--~~--~~~~~~~~~~l~~~~i~~i~~d~~g---------~lWi-gT-~~-Gl~~~d  568 (795)
T 4a2l_A          508 HK-RLWI-GGE-EGLSVFKQEGL--DI--QKASILPVSNVTKLFTNCIYEASNG---------IIWV-GT-RE-GFYCFN  568 (795)
T ss_dssp             TC-CEEE-EES-SCEEEEEEETT--EE--EECCCSCSCGGGGSCEEEEEECTTS---------CEEE-EE-SS-CEEEEE
T ss_pred             CC-CEEE-EeC-CceEEEeCCCC--eE--EEecCCCCCCCCCCeeEEEEECCCC---------CEEE-Ee-CC-CceeEC
Confidence            74 4444 444 78777766542  22  222       123468888888877         3444 44 34 677787


Q ss_pred             CCCc
Q 020107          324 PESD  327 (331)
Q Consensus       324 ~~~~  327 (331)
                      ..++
T Consensus       569 ~~~~  572 (795)
T 4a2l_A          569 EKDK  572 (795)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            7654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.59  E-value=0.00029  Score=64.70  Aligned_cols=191  Identities=12%  Similarity=0.094  Sum_probs=106.7

Q ss_pred             ceeEeee-cCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCc-ccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           12 ADAVEFC-PQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAE-EKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        12 ~~~v~~~-~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ....+|+ |++   ++||.+....     ++....|+++|+.++ + .+.....   .....++|+|+    ++.|+...
T Consensus       176 ~~~~~~S~PDG---~~lAy~~~~~-----G~~~~~l~v~dl~~g~~-~l~~~~~---~~~~~~~WspD----g~~l~y~~  239 (751)
T 2xe4_A          176 VMEVKPAPPEH---DLVAFSVDMS-----GNEVYTIEFKRISDPSQ-TIADKVS---GTNGEIVWGPD----HTSLFYVT  239 (751)
T ss_dssp             EEEEEECTTTT---CEEEEEEESS-----SSSCEEEEEEETTCTTC-CCCCCEE---EECSCCEECSS----TTEEEEEE
T ss_pred             EeeeEecCCCC---CEEEEEEeCC-----CCceEEEEEEECCCCCE-eCCcccc---CceeeEEEecC----CCEEEEEE
Confidence            3456677 555   8888876210     012235999999887 5 2211111   12457899999    77777666


Q ss_pred             CCc-----cE-EEecCCCccc---------CccEEEEEEcCCCCeEEEEec---CCeEEEEEccccceee-eeee-eccc
Q 020107           90 ADG-----GL-LRDITGEKIS---------SSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEV-LQQW-KAHE  149 (331)
Q Consensus        90 ~dg-----~i-iw~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~-~~~~-~~~~  149 (331)
                      .+.     .+ .+++.+.+..         ......+.|+|++++|+....   ...|.++|+.++.... +..+ ....
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~  319 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK  319 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred             ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence            542     23 6666654311         123567889999999877653   4568888987652111 0222 2234


Q ss_pred             ceeEEEeeCCCCCcEEEEEcCC----CeEEEEEccCCCceee-eecccCCCc--ceEEEEEecCCCCEEEEEecCCeEEE
Q 020107          150 FELWATSFDVHQPHMVYTGSDD----CKFSGWDIRESPFKLA-FQNSKIHKM--GVCCIASIPSDSNTLLTGSYDEYLRV  222 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~i  222 (331)
                      ....++.|+. ++.+++....+    ..|..+|+.++..... +..   +..  .+..+.+.  .+.++++...++..++
T Consensus       320 ~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~---~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l  393 (751)
T 2xe4_A          320 GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD---HSEDVFMESIAVR--SNYLVVAGRRAGLTRI  393 (751)
T ss_dssp             TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC---CCSSEEEEEEEEC--SSEEEEEEEETTEEEE
T ss_pred             CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC---CCCCcEEEEEEEE--CCEEEEEEEeCCEEEE
Confidence            4556666653 54555555443    3666777764322222 222   333  34555553  4556677777886555


Q ss_pred             EE
Q 020107          223 WD  224 (331)
Q Consensus       223 wd  224 (331)
                      |-
T Consensus       394 ~~  395 (751)
T 2xe4_A          394 WT  395 (751)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.59  E-value=4.1e-05  Score=59.06  Aligned_cols=183  Identities=11%  Similarity=0.057  Sum_probs=111.5

Q ss_pred             ccEEEEEEcCCCCeEEEEecC--CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107          106 SMCLCLEWNPSATSITVGLSD--GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP  183 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  183 (331)
                      .-...+.|+. +.+..+.+.+  ..|+.+|+.+++......+..+. --..++..  ++.+....-.++.+.+||..+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-FGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-CEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-ceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            3456788876 4444444444  48999999998763333332221 11234443  45666666789999999999998


Q ss_pred             ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee-cC---CceEEEEECCCCCCeEEEE
Q 020107          184 FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC-LG---GGVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       184 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~~~~~~  259 (331)
                      .+..+.. .  .. -..++  + ++..|+.+..++.|.++|..+. +.+..+... +.   ..++.+.|. +  +.+.+.
T Consensus        97 ~~~ti~~-~--~~-Gwglt--~-dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~~-~--G~lyan  165 (243)
T 3mbr_X           97 PRARFRY-P--GE-GWALT--S-DDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEWV-N--GELLAN  165 (243)
T ss_dssp             EEEEEEC-S--SC-CCEEE--E-CSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-T--TEEEEE
T ss_pred             EEEEEeC-C--CC-ceEEe--e-CCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEEe-C--CEEEEE
Confidence            8888776 2  22 23444  4 4555555556889999999986 333332221 22   235667776 3  445555


Q ss_pred             E-ecCcEEEEEEcCcccceeEEeecC-------------CcceeeeeecCCCCcccccccCcEEEEee
Q 020107          260 C-MHNGFAVVKVGGEKAEVLETYAKH-------------GSLAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       260 ~-~~~~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                      . ..+.  +..+...+++.+..+.-.             ....++++++|+..        ++++||-
T Consensus       166 vw~s~~--I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~--------~lfVTGK  223 (243)
T 3mbr_X          166 VWLTSR--IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD--------RLFVTGK  223 (243)
T ss_dssp             ETTTTE--EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT--------EEEEEET
T ss_pred             ECCCCe--EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC--------EEEEECC
Confidence            4 4566  444444446777776511             13568899999875        6777764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.58  E-value=1.1e-05  Score=74.00  Aligned_cols=196  Identities=11%  Similarity=0.101  Sum_probs=111.0

Q ss_pred             cEEEEEEc-CCCCeEEEEec-CC----eEEEEEcccc-ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-----CeE
Q 020107          107 MCLCLEWN-PSATSITVGLS-DG----SVSIVSVVES-QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-----CKF  174 (331)
Q Consensus       107 ~v~~~~~~-~~~~~l~~~~~-dg----~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i  174 (331)
                      .+...+|+ |||++|+.+.. +|    .|+++|+.++ +.. ...+.   .....++|+| +++.|+....+     ..|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-Ccccc---CceeeEEEec-CCCEEEEEEECCCCCCCEE
Confidence            56788999 99998876544 33    5999999987 521 11121   1245789999 55555554443     368


Q ss_pred             EEEEccCCCce--eeeecccCCCcceEEEEEecCCCCEEEEEec---CCeEEEEEecCCCCCc--eeeeeecCCceEEEE
Q 020107          175 SGWDIRESPFK--LAFQNSKIHKMGVCCIASIPSDSNTLLTGSY---DEYLRVWDVRSISKPV--NETSVCLGGGVWRIK  247 (331)
Q Consensus       175 ~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~  247 (331)
                      .++++.++...  ..+.. . .......+.|+| ++++|+..+.   ...|.++|+.+.....  ..+........+++.
T Consensus       250 ~~~~lgt~~~~~~lv~~~-~-~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~  326 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEE-H-NPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ  326 (751)
T ss_dssp             EEEETTSCGGGCEEEEEC-C-CTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred             EEEECCCCchhcEEEEec-C-CCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence            88888776432  22322 1 234567889999 8888777653   3468888887752222  322233445566676


Q ss_pred             ECCCCCCeEEEEEec---CcEEEEEEcCcccceeEE-eecCCc--ceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107          248 HHPFIPGLVLAACMH---NGFAVVKVGGEKAEVLET-YAKHGS--LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI  321 (331)
Q Consensus       248 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i  321 (331)
                      |+..  +.++..+..   +..+++.+....+..... +..|..  .+.++.+.  +.        .++++.. .++..++
T Consensus       327 ~~~g--~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~--------~lv~~~~-~~g~~~l  393 (751)
T 2xe4_A          327 MHGT--SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SN--------YLVVAGR-RAGLTRI  393 (751)
T ss_dssp             EETT--TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SS--------EEEEEEE-ETTEEEE
T ss_pred             eeeC--CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CC--------EEEEEEE-eCCEEEE
Confidence            6544  444444433   334555554332111122 222322  44555554  32        5677777 7886555


Q ss_pred             Ec
Q 020107          322 WM  323 (331)
Q Consensus       322 W~  323 (331)
                      |-
T Consensus       394 ~~  395 (751)
T 2xe4_A          394 WT  395 (751)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.58  E-value=0.00017  Score=59.12  Aligned_cols=266  Identities=8%  Similarity=-0.054  Sum_probs=140.2

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe---eecCcEeEEEEcCCCCCCCCeEE
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR---MDTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      ..+.+|.+.+..   ..+|+|.           .|.| +...+.++ .......   .....+.+|.|.+.      .+.
T Consensus        36 ~~~~~v~~~~~~---~~~~~G~-----------~g~i-~~s~DgG~-tW~~~~~~~~~~~~~~~~i~~~~~------~~~   93 (327)
T 2xbg_A           36 ATILDMSFIDRH---HGWLVGV-----------NATL-METRDGGQ-TWEPRTLVLDHSDYRFNSVSFQGN------EGW   93 (327)
T ss_dssp             SCEEEEEESSSS---CEEEEET-----------TTEE-EEESSTTS-SCEECCCCCSCCCCEEEEEEEETT------EEE
T ss_pred             CcEEEEEECCCC---cEEEEcC-----------CCeE-EEeCCCCC-CCeECCCCCCCCCccEEEEEecCC------eEE
Confidence            456677665443   6777764           6655 33333332 2232211   12346889999764      333


Q ss_pred             EEcCCccEE--------EecCCCc-ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc-ceeeeeeeecccceeEEEe
Q 020107           87 QADADGGLL--------RDITGEK-ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES-QLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        87 ~~~~dg~ii--------w~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~  156 (331)
                      .++..|.++        |...... .....+..+.+.+++..++++ .+|.|.. ..+.+ .+..+  .......+..++
T Consensus        94 ~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~--~~~~~~~~~~~~  169 (327)
T 2xbg_A           94 IVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQAL--VQEAIGVMRNLN  169 (327)
T ss_dssp             EEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEE--ECSCCCCEEEEE
T ss_pred             EEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEe--ecCCCcceEEEE
Confidence            345566552        3222211 122456778777666655554 4565432 11222 23222  223445688999


Q ss_pred             eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107          157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS  236 (331)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  236 (331)
                      +.| ++.+++.+...+..+-.|-. +..-..+..  .....+..+.+.+ ++.++ ..+.+|.+++.+...+ +......
T Consensus       170 ~~~-~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~--~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G-~tW~~~~  242 (327)
T 2xbg_A          170 RSP-SGEYVAVSSRGSFYSTWEPG-QTAWEPHNR--TTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNS-ENWGELL  242 (327)
T ss_dssp             ECT-TSCEEEEETTSSEEEEECTT-CSSCEEEEC--CSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEE-EEECCCB
T ss_pred             EcC-CCcEEEEECCCcEEEEeCCC-CCceeECCC--CCCCccceeEECC-CCCEE-EEeCCceEEEecCCCC-CeeEecc
Confidence            998 66666666544333334421 221122221  2456788999988 66655 4556788777642211 1111100


Q ss_pred             e---ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee---cCCcceeeeeecCCCCcccccccCcEEE
Q 020107          237 V---CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLEGKRKNSLVA  310 (331)
Q Consensus       237 ~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~l~  310 (331)
                      .   .....+..+.+.++  +.+++++.++.  ++.-.+. ++.-..+.   .....++++.|.+++          .++
T Consensus       243 ~~~~~~~~~~~~v~~~~~--~~~~~~g~~g~--i~~S~Dg-G~tW~~~~~~~~~~~~~~~v~~~~~~----------~~~  307 (327)
T 2xbg_A          243 SPLRRNSVGFLDLAYRTP--NEVWLAGGAGA--LLCSQDG-GQTWQQDVDVKKVPSNFYKILFFSPD----------QGF  307 (327)
T ss_dssp             CTTSSCCSCEEEEEESSS--SCEEEEESTTC--EEEESST-TSSCEECGGGTTSSSCCCEEEEEETT----------EEE
T ss_pred             CCcccCCcceEEEEecCC--CEEEEEeCCCe--EEEeCCC-CcccEEcCccCCCCCCeEEEEEECCC----------ceE
Confidence            1   12345889999886  55666666666  4443332 44444343   234567888887654          456


Q ss_pred             EeecCCCeEEEEcC
Q 020107          311 TCSFYDRLLRIWMP  324 (331)
Q Consensus       311 s~~~~d~~i~iW~~  324 (331)
                      .++ .+|.|.-++-
T Consensus       308 ~~G-~~G~i~~~~~  320 (327)
T 2xbg_A          308 ILG-QKGILLRYVT  320 (327)
T ss_dssp             EEC-STTEEEEECC
T ss_pred             EEc-CCceEEEEcC
Confidence            666 6998887764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.57  E-value=0.00012  Score=61.89  Aligned_cols=206  Identities=9%  Similarity=-0.069  Sum_probs=121.1

Q ss_pred             ccEEEEEEcCCCCeEEEEec-CCeEEEEEccccc--eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC
Q 020107          106 SMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQ--LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES  182 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  182 (331)
                      ..+..++|++.+..|+.+.. .+.|+.+++....  ......+.........+++.+..++++++-...+.|.+.++...
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~  191 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  191 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence            46788999987777766654 7888888887521  01122222233456778887646677777777889999998865


Q ss_pred             CceeeeecccCCCcceEEEEEecCCCCEEEEEec-CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107          183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  261 (331)
                      .....+..   .-.....|+++|..+.++.+-.. .+.|...++...  ....+....-.....|+++|++..++++-..
T Consensus       192 ~~~~l~~~---~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~--~~~~~~~~~l~~P~glavd~~~~~lY~aD~~  266 (400)
T 3p5b_L          192 KRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTENIQWPNGITLDLLSGRLYWVDSK  266 (400)
T ss_dssp             SEEEEEEC---SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC--SCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEeC---CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC--ccEEEEECCCCceEEEEEEeCCCEEEEEECC
Confidence            43333332   34457899999944444444322 367888888753  2222122333567899999887444444444


Q ss_pred             cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          262 HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .+.|..+++.....+.+....+......++++..+          .++++-. ..+.|..++..++
T Consensus       267 ~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~----------~lywtd~-~~~~V~~~~~~~G  321 (400)
T 3p5b_L          267 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED----------KVFWTDI-INEAIFSANRLTG  321 (400)
T ss_dssp             TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETT----------EEEEEES-SSCSEEEEESSSC
T ss_pred             CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCC----------EEEEecC-CCCeEEEEEcCCC
Confidence            56666666544322222221122334556776433          4666665 6788888886555

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.57  E-value=1.5e-05  Score=72.07  Aligned_cols=281  Identities=9%  Similarity=-0.070  Sum_probs=142.3

Q ss_pred             eEeeecCCCCCcEEEEEeecccCC-CCCCCCCcEEEEeccCcccc-eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107           14 AVEFCPQDSYHHVLAASTYTLQEG-DKPSRNGSISLFNVNAEEKN-LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD   91 (331)
Q Consensus        14 ~v~~~~~~~~~~~la~g~~~~~~~-~~~~~~g~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   91 (331)
                      .+++.|.  ++++++.|++..... ........+.+||..+.... +......+.....++++.++    +++++.|+.+
T Consensus       190 ~~av~~~--~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~----g~lyv~GG~~  263 (656)
T 1k3i_A          190 AAAIEPT--SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN----GQIVVTGGND  263 (656)
T ss_dssp             EEEEETT--TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT----SCEEEECSSS
T ss_pred             eEEEEec--CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC----CCEEEeCCCC
Confidence            4455552  237888887432110 00001126888998877522 22221222333445777888    8899998854


Q ss_pred             c-cE-EEecCCCcc------c-CccEEEEEEcCCCCeEEEEe-cC-----CeEEEEEccccceeeeeee--ecccceeEE
Q 020107           92 G-GL-LRDITGEKI------S-SSMCLCLEWNPSATSITVGL-SD-----GSVSIVSVVESQLEVLQQW--KAHEFELWA  154 (331)
Q Consensus        92 g-~i-iw~~~~~~~------~-~~~v~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~--~~~~~~v~~  154 (331)
                      + .+ +||..+.+.      + ...-.++...++++.++.|+ .+     ..+.+||..++++..+...  ......-..
T Consensus       264 ~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~  343 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ  343 (656)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT
T ss_pred             CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc
Confidence            4 45 777665432      1 11113455667899988888 34     5689999988776443110  000000001


Q ss_pred             EeeCCCCCcEEEEEcCC---------CeEEEEEccCCCceeeeecccC------CCcceEEEEEecCCCCEEEEEecCC-
Q 020107          155 TSFDVHQPHMVYTGSDD---------CKFSGWDIRESPFKLAFQNSKI------HKMGVCCIASIPSDSNTLLTGSYDE-  218 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~-  218 (331)
                      ..+.. ++..++.++.+         ..+..||..+............      ....-.++.+...++.+++.|+.++ 
T Consensus       344 ~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~  422 (656)
T 1k3i_A          344 GLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY  422 (656)
T ss_dssp             GGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred             ceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence            12222 44555555444         3567888877653332222000      0112345555444778888888543 


Q ss_pred             ----------eEEEEEecCCCCCceeee--eecCCc-eEEEEECCCCCCeEEEEEec-----------CcEEEEEEcCcc
Q 020107          219 ----------YLRVWDVRSISKPVNETS--VCLGGG-VWRIKHHPFIPGLVLAACMH-----------NGFAVVKVGGEK  274 (331)
Q Consensus       219 ----------~i~iwd~~~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  274 (331)
                                .|.+||..+.  ......  ...... -.++...|++ .+++.+|.+           ..+.+|+....+
T Consensus       423 ~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          423 QDSDATTNAHIITLGEPGTS--PNTVFASNGLYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             SSSBCCCCEEEEECCSTTSC--CEEEECTTCCSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCCCcCCcceEEEcCCCCCC--CeeEEccCCCCCCcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence                      5777877653  122211  111122 2345666775 566665543           335566665432


Q ss_pred             cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107          275 AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       275 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  313 (331)
                      ...+..+.........+.+.|++         ++++.||
T Consensus       500 W~~~~~~~~~R~~hs~a~ll~dg---------~v~v~GG  529 (656)
T 1k3i_A          500 FYKQNPNSIVRVYHSISLLLPDG---------RVFNGGG  529 (656)
T ss_dssp             EEECCCCSSCCCTTEEEEECTTS---------CEEEEEC
T ss_pred             eeecCCCCCccccccHhhcCCCc---------EEEecCC
Confidence            22222222222222334456777         6888888

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.56  E-value=0.00021  Score=59.16  Aligned_cols=202  Identities=8%  Similarity=-0.076  Sum_probs=121.7

Q ss_pred             ccEEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc
Q 020107          106 SMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF  184 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  184 (331)
                      ..+..++|++....|+.+. ..+.|..+++.......+  +.........+++.+.+++++++-...+.|.+.++.....
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  150 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  150 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE--EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence            3467899998777766655 478899999886543222  2222234567888765667777777788999999875543


Q ss_pred             eeeeecccCCCcceEEEEEecCCCCEEEEEecC-CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107          185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN  263 (331)
Q Consensus       185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  263 (331)
                      ...+..   .-.....++++|..+.++.+-... +.|..+++...  ....+....-.....|+++|++..++++-...+
T Consensus       151 ~~l~~~---~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          151 KVLLWQ---SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             EEEECT---TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEeC---CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC--CcEEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence            322222   345678999999455555555455 78888887753  222211223345789999987644555544555


Q ss_pred             cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .|..+++...  .....+........++++. .+         .++++-. ..+.|...+..++
T Consensus       226 ~I~~~~~dG~--~~~~~~~~~~~~P~giav~-~~---------~ly~td~-~~~~V~~~~~~~G  276 (349)
T 3v64_C          226 VIERANLDGS--HRKAVISQGLPHPFAITVF-ED---------SLYWTDW-HTKSINSANKFTG  276 (349)
T ss_dssp             EEEEEETTSC--SCEEEECSSCSSEEEEEEE-TT---------EEEEEET-TTTEEEEEETTTC
T ss_pred             EEEEEeCCCC--ceEEEEeCCCCCceEEEEE-CC---------EEEEecC-CCCeEEEEEccCC
Confidence            6555555432  1112222223455677773 33         4555554 6788888774444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.53  E-value=0.00016  Score=65.37  Aligned_cols=73  Identities=11%  Similarity=0.179  Sum_probs=50.1

Q ss_pred             EEeeCCCCCcEEEEEcCCC-------------------eEEEEEccCCCceeeeecccCCC-------cceEEEEEecCC
Q 020107          154 ATSFDVHQPHMVYTGSDDC-------------------KFSGWDIRESPFKLAFQNSKIHK-------MGVCCIASIPSD  207 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~  207 (331)
                      .+++.| ...+++.++.++                   .|..+|.++++.+..++.. .|.       .++....+.. +
T Consensus       234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~~~~d~~~-~  310 (668)
T 1kv9_A          234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT-PGDSWDFTATQQITLAELNI-D  310 (668)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-T
T ss_pred             ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC-CCccccccCCCCcEEEEecc-C
Confidence            356776 556777777665                   4999999999877776652 122       2333333333 5


Q ss_pred             CC---EEEEEecCCeEEEEEecCCC
Q 020107          208 SN---TLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       208 ~~---~l~~~~~d~~i~iwd~~~~~  229 (331)
                      ++   .++.++.+|.+.++|.++++
T Consensus       311 G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          311 GKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CcEEEEEEEECCCCEEEEEECCCCC
Confidence            54   68999999999999998864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.50  E-value=0.00027  Score=57.57  Aligned_cols=221  Identities=7%  Similarity=-0.045  Sum_probs=125.1

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE-EEcCCccE-EEecCC----Ccc------cCccEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA-QADADGGL-LRDITG----EKI------SSSMCLC  110 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i-iw~~~~----~~~------~~~~v~~  110 (331)
                      ...|+..++....  ...+.. ......+++|.+.    +..|. +-..++.| ..++.+    ...      .-.....
T Consensus         9 ~~~I~~i~~~~~~--~~~~~~-~~~~p~g~~~d~~----~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            9 RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVA----SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             BSSEEEEETTSCC--CEEEEC-SCSSEEEEEEETT----TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             CCeEEEEECCCcc--eEehhc-CCCceEEEEEEeC----CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            6679999998764  333322 3456789999987    44444 44455666 555544    111      1123467


Q ss_pred             EEEcCCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-CeEEEEEccCCCceeee
Q 020107          111 LEWNPSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-CKFSGWDIRESPFKLAF  188 (331)
Q Consensus       111 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~  188 (331)
                      +++.+.+..|+.+ ...+.|.++++.......  .+.........++++|.++.++++-... +.|...++.... ...+
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~  158 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL  158 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEE
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceEE--EEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEE
Confidence            8888766666555 557899999987543221  1222334578999998555555555443 788888886433 3333


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee--cCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC--LGGGVWRIKHHPFIPGLVLAACMHNGFA  266 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~  266 (331)
                      ..  ..-.....|+++|..+.+.++-...+.|..+|+... . ...+...  .......+++..+  .++++-...+.  
T Consensus       159 ~~--~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~-~~~~~~~~~~~~~P~giav~~~--~ly~~d~~~~~--  230 (316)
T 1ijq_A          159 VT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-N-RKTILEDEKRLAHPFSLAVFED--KVFWTDIINEA--  230 (316)
T ss_dssp             EC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-S-CEEEEECTTTTSSEEEEEEETT--EEEEEETTTTE--
T ss_pred             EE--CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-c-eEEEeecCCccCCcEEEEEECC--EEEEEECCCCe--
Confidence            21  123567899999834444455556679999998753 2 2221121  1234567777532  45544444455  


Q ss_pred             EEEEcCcccceeEEe
Q 020107          267 VVKVGGEKAEVLETY  281 (331)
Q Consensus       267 ~~~~~~~~~~~~~~~  281 (331)
                      +..+....++.+..+
T Consensus       231 V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          231 IFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEETTTCCCCEEE
T ss_pred             EEEEeCCCCcceEEE
Confidence            444433223434444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=0.00075  Score=62.31  Aligned_cols=253  Identities=15%  Similarity=0.165  Sum_probs=144.4

Q ss_pred             cEEEEeccCcccceEEeEe-------eecCcEeEEEEcCCCCCCCCeEEEEcC-CccEEEecCCC---------------
Q 020107           45 SISLFNVNAEEKNLELLYR-------MDTAGIFDIKWSPVGGNAGPFLAQADA-DGGLLRDITGE---------------  101 (331)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~iiw~~~~~---------------  101 (331)
                      -+.+|+..+..  +..+..       .....|.++...++    +. |..|+. +|..+++..+.               
T Consensus       231 Gl~~~d~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~d~~----g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~  303 (781)
T 3v9f_A          231 GLALFNANTET--FTNFHNNPGNIHGALSSYIFSIKQLKD----NK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIRE  303 (781)
T ss_dssp             EEEEEETTTTE--EEC-----------CCCCEEEEEECTT----SE-EEEEESSSCEEEEETTCC---------CEEECB
T ss_pred             cHheECCCCCc--EEEEEcCCCccccccCceEEEEEECCC----CC-EEEEeCCCCeEEECCCCCeeeeeeccccccccC
Confidence            68888876543  222211       12346899988777    54 444555 55545554332               


Q ss_pred             -----cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee-------ecccceeEEEeeCCCCCcEEEEEc
Q 020107          102 -----KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW-------KAHEFELWATSFDVHQPHMVYTGS  169 (331)
Q Consensus       102 -----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~  169 (331)
                           ......|.++...+++. |-+|+.++-|..++............       ......|.++...+ ++. |..|+
T Consensus       304 ~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lWigt  380 (781)
T 3v9f_A          304 GDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGK-LWIGT  380 (781)
T ss_dssp             CSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSC-EEEEE
T ss_pred             CCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCC-EEEEe
Confidence                 12346788998888775 56677677788898876543222110       01234688888775 444 55666


Q ss_pred             CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee--ecCCceEEEE
Q 020107          170 DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV--CLGGGVWRIK  247 (331)
Q Consensus       170 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~  247 (331)
                      .++-|..+|..++...............|.++...+ ++. |..|+.++-|..+|.++. + +.....  .....|.++.
T Consensus       381 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~v~~i~  456 (781)
T 3v9f_A          381 DGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLK-K-FQIIELEKNELLDVRVFY  456 (781)
T ss_dssp             BSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSSC-E-EEECCSTTTCCCCEEEEE
T ss_pred             CCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCCC-c-EEEeccCCCCCCeEEEEE
Confidence            667788899875432211110011346789998876 555 455666677888887653 1 222111  1245788998


Q ss_pred             ECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC-----CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107          248 HHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH-----GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW  322 (331)
                      ..++  +.+.+++. +++..++....  +........     ...|.++...+++         . |..++ .++-|..+
T Consensus       457 ~d~~--g~lwigt~-~Gl~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g---------~-lWigt-~~~Gl~~~  520 (781)
T 3v9f_A          457 EDKN--KKIWIGTH-AGVFVIDLASK--KVIHHYDTSNSQLLENFVRSIAQDSEG---------R-FWIGT-FGGGVGIY  520 (781)
T ss_dssp             ECTT--SEEEEEET-TEEEEEESSSS--SCCEEECTTTSSCSCSCEEEEEECTTC---------C-EEEEE-SSSCEEEE
T ss_pred             ECCC--CCEEEEEC-CceEEEeCCCC--eEEecccCcccccccceeEEEEEcCCC---------C-EEEEE-cCCCEEEE
Confidence            8887  44555444 77666665442  222211111     3568888888876         3 34444 44457778


Q ss_pred             cCCCc
Q 020107          323 MPESD  327 (331)
Q Consensus       323 ~~~~~  327 (331)
                      +.+++
T Consensus       521 ~~~~~  525 (781)
T 3v9f_A          521 TPDMQ  525 (781)
T ss_dssp             CTTCC
T ss_pred             eCCCC
Confidence            87654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.47  E-value=0.00033  Score=57.06  Aligned_cols=213  Identities=7%  Similarity=-0.024  Sum_probs=121.6

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE-EEcCCccE-EEecCCCccc-------CccEEEEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA-QADADGGL-LRDITGEKIS-------SSMCLCLEW  113 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i-iw~~~~~~~~-------~~~v~~~~~  113 (331)
                      ...|+..+++........... ......+++|.+.    +..|. +-...+.| .+++.+....       -.....+++
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~----~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glav   86 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFS----HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC   86 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGG----GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEE
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeC----CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEE
Confidence            668999999876422222222 2345779999987    44454 44455555 5665554211       123456888


Q ss_pred             cCCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEccCCCceeeeecc
Q 020107          114 NPSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIRESPFKLAFQNS  191 (331)
Q Consensus       114 ~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~  191 (331)
                      .+.+..|+.+ ...+.|.+++++......+  ..........+++.|..+.++.+-. ..+.|...++.... ...+.. 
T Consensus        87 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~-  162 (318)
T 3sov_A           87 DWLGEKLYWTDSETNRIEVSNLDGSLRKVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIIN-  162 (318)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEEC-
T ss_pred             EcCCCeEEEEECCCCEEEEEECCCCcEEEE--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEE-
Confidence            8755555554 4578899999875432111  2233345688999985555555542 35788888887433 222221 


Q ss_pred             cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107          192 KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK  269 (331)
Q Consensus       192 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (331)
                       ..-...+.|+++|..+.+.++-+..+.|..+|+....  ...+..........+++..+  .++.+-...+.+..++
T Consensus       163 -~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~--~~~~~~~~~~~P~glav~~~--~lywtd~~~~~V~~~~  235 (318)
T 3sov_A          163 -SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN--RQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN  235 (318)
T ss_dssp             -SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSCCSCEEEEEEETT--EEEEEETTTTEEEEEE
T ss_pred             -CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc--eEEEecCCCCCceEEEEeCC--EEEEEecCCCeEEEEE
Confidence             1234578999998344444555567889999987532  22212223445667777543  4555543444433333

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.45  E-value=0.00064  Score=62.35  Aligned_cols=222  Identities=7%  Similarity=-0.056  Sum_probs=124.3

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----------cCccEEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----------SSSMCLCL  111 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----------~~~~v~~~  111 (331)
                      ...|+..++....  ...+.. ....+.+|+|.+..   +.++++-...+.| .+++.....          .......|
T Consensus       403 ~~~Ir~i~l~~~~--~~~l~~-~~~~~~gl~~d~~~---~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL  476 (791)
T 3m0c_C          403 RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVAS---NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL  476 (791)
T ss_dssp             BSSEEEECTTSCC--CEEEEC-SCSSEEEEEEETTT---TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             ccceeEeeccCCc--ceeeec-CCCceEEEeecccC---CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence            5678888887654  333322 34567899999862   3344454555556 455543210          11334578


Q ss_pred             EEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-CeEEEEEccCCCceeeee
Q 020107          112 EWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-CKFSGWDIRESPFKLAFQ  189 (331)
Q Consensus       112 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~  189 (331)
                      ++.+.++.|+.+. ..+.|.+.++......  ..+.........|+++|..+.++++-... +.|...++........+.
T Consensus       477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~--~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRK--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEE--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eeeecCCcEEEEecCCCeEEEEeCCCCeEE--EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence            8887776666654 4789999998754321  22222334578999998555555554333 789888887544322222


Q ss_pred             cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee--cCCceEEEEECCCCCCeEEEEEecCcEEE
Q 020107          190 NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC--LGGGVWRIKHHPFIPGLVLAACMHNGFAV  267 (331)
Q Consensus       190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  267 (331)
                      .   .-.....|++++..+.+.++-...+.|..+|+...  ....+...  .-.....|+...+  .++++-...+.  |
T Consensus       555 ~---~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~--~~~~v~~~~~~l~~P~glav~~~--~lYwtD~~~~~--I  625 (791)
T 3m0c_C          555 E---NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEA--I  625 (791)
T ss_dssp             S---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEECTTTTSSEEEEEEETT--EEEEEETTTTE--E
T ss_pred             C---CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC--ceEEEecCCCccCCCCEEEEeCC--EEEEEECCCCE--E
Confidence            2   33568999999834444444456678999998753  22221222  1223456666443  44444434444  4


Q ss_pred             EEEcCcccceeEEe
Q 020107          268 VKVGGEKAEVLETY  281 (331)
Q Consensus       268 ~~~~~~~~~~~~~~  281 (331)
                      +.+....++.+..+
T Consensus       626 ~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          626 FSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEETTTCCCCEEE
T ss_pred             EEEeCCCCcceEEe
Confidence            44443334433333

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.42  E-value=0.0001  Score=57.46  Aligned_cols=161  Identities=10%  Similarity=-0.018  Sum_probs=98.5

Q ss_pred             CcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc-CCccE-EEecCCCcccCc---cEEEEEEcCCCC
Q 020107           44 GSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD-ADGGL-LRDITGEKISSS---MCLCLEWNPSAT  118 (331)
Q Consensus        44 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i-iw~~~~~~~~~~---~v~~~~~~~~~~  118 (331)
                      ..|+++|+++++ .+..+ .. ..........+.    ++.|.... .++.+ ++|..+.+....   .-....++++++
T Consensus        65 S~v~~vD~~Tgk-v~~~~-~l-~~~~FgeGit~~----g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~  137 (262)
T 3nol_A           65 SSIRKVDIESGK-TLQQI-EL-GKRYFGEGISDW----KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQ  137 (262)
T ss_dssp             EEEEEECTTTCC-EEEEE-EC-CTTCCEEEEEEE----TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSS
T ss_pred             ceEEEEECCCCc-EEEEE-ec-CCccceeEEEEe----CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCC
Confidence            489999999886 33333 22 223333223333    33454444 45566 888887654210   001223345778


Q ss_pred             eEEEEecCCeEEEEEccccceeeeeeeec--ccce---eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc-
Q 020107          119 SITVGLSDGSVSIVSVVESQLEVLQQWKA--HEFE---LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK-  192 (331)
Q Consensus       119 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-  192 (331)
                      .|+.+..++.|.++|..+.+.  +..+..  ...+   ++.+.|.  ++.+++..-.+..|.+.|.++++....+.... 
T Consensus       138 ~L~~SdGs~~i~~iDp~T~~v--~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L  213 (262)
T 3nol_A          138 YLIMSDGTPVLRFLDPESLTP--VRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGI  213 (262)
T ss_dssp             CEEECCSSSEEEEECTTTCSE--EEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTG
T ss_pred             EEEEECCCCeEEEEcCCCCeE--EEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcC
Confidence            888887788999999988654  333322  2223   4457775  56777777678999999999999877766511 


Q ss_pred             --------CCCcceEEEEEecCCCCEEEEEec
Q 020107          193 --------IHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       193 --------~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                              ......+.|+++| +.+.|++.+.
T Consensus       214 ~~~~~~~~~~~~vlNGIA~dp-~~~~lfVTGK  244 (262)
T 3nol_A          214 LAEAGPLPSPIDVLNGIAWDK-EHHRLFVTGK  244 (262)
T ss_dssp             GGGSCSCCSSCCCEEEEEEET-TTTEEEEEET
T ss_pred             ccccccccCcCCceEEEEEcC-CCCEEEEECC
Confidence                    1124579999999 6555555554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.41  E-value=0.00019  Score=63.50  Aligned_cols=54  Identities=15%  Similarity=0.073  Sum_probs=36.5

Q ss_pred             eEEEEEccCCCceeeeecccCC--------CcceEEEEEecCCC---CEEEEEecCCeEEEEEecCCC
Q 020107          173 KFSGWDIRESPFKLAFQNSKIH--------KMGVCCIASIPSDS---NTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       173 ~i~i~d~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      .|..+|.++++.+..++.. .|        ..++. +...+ ++   ..++.++.+|.+.++|..+++
T Consensus       273 ~v~Ald~~tG~~~W~~~~~-~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~  337 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKT-PHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             EEEEEETTTCCEEEEEESS-TTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEEecCCCcEEEEecCC-CCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCC
Confidence            6999999999877666642 12        12222 22223 56   367788899999999998863

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.40  E-value=0.00021  Score=55.71  Aligned_cols=181  Identities=8%  Similarity=-0.037  Sum_probs=114.7

Q ss_pred             EeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcccCc----cEEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeee
Q 020107           69 IFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKISSS----MCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVL  142 (331)
Q Consensus        69 v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~  142 (331)
                      ...+.|+.     +.++.+.+.+|.+ ..|+.+++....    ........++++.|.... .++.+.+||..+.+.  +
T Consensus        57 tqGL~~~~-----~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~--~  129 (268)
T 3nok_A           57 TQGLVFHQ-----GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR--E  129 (268)
T ss_dssp             EEEEEEET-----TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE--E
T ss_pred             cceEEEEC-----CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE--E
Confidence            57888873     5677888888888 888887765322    122211223445555544 489999999988754  5


Q ss_pred             eeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc---ceEEEEEecCCCCEEEEEecCCe
Q 020107          143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM---GVCCIASIPSDSNTLLTGSYDEY  219 (331)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~d~~  219 (331)
                      .++... ..-..+++   ++..|+.+..++.|.++|..+.+....+.... +..   .++.+.|.  ++.+.+..-.+..
T Consensus       130 ~ti~~~-~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v~~lNeLe~~--dG~lyanvw~s~~  202 (268)
T 3nok_A          130 RTTRYS-GEGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPVELINELECA--NGVIYANIWHSSD  202 (268)
T ss_dssp             EEEECS-SCCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE--TTEEEEEETTCSE
T ss_pred             EEEeCC-CceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCcccccccccEEe--CCEEEEEECCCCe
Confidence            555532 22345553   34556666679999999999988776666511 222   45677876  5666655557889


Q ss_pred             EEEEEecCCCCCceeeeee------------cCCceEEEEECCCCCCeEEEEEecCc
Q 020107          220 LRVWDVRSISKPVNETSVC------------LGGGVWRIKHHPFIPGLVLAACMHNG  264 (331)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~  264 (331)
                      |.+.|.+++ +.+..+...            ...-.+.|+|+|+.+.+++++-....
T Consensus       203 I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~  258 (268)
T 3nok_A          203 VLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPR  258 (268)
T ss_dssp             EEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSE
T ss_pred             EEEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCc
Confidence            999999986 433332111            12356889999988555555434444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.39  E-value=0.00051  Score=55.65  Aligned_cols=221  Identities=6%  Similarity=-0.043  Sum_probs=123.0

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+..++|.+.+   +++++-.          .++.|..|+.+...  .... . .......+++.++    ++++++..
T Consensus        32 ~~pegia~~~~g---~lyv~d~----------~~~~I~~~d~~g~~--~~~~-~-~~~~p~gia~~~d----G~l~vad~   90 (306)
T 2p4o_A           32 TFLENLASAPDG---TIFVTNH----------EVGEIVSITPDGNQ--QIHA-T-VEGKVSGLAFTSN----GDLVATGW   90 (306)
T ss_dssp             CCEEEEEECTTS---CEEEEET----------TTTEEEEECTTCCE--EEEE-E-CSSEEEEEEECTT----SCEEEEEE
T ss_pred             CCcceEEECCCC---CEEEEeC----------CCCeEEEECCCCce--EEEE-e-CCCCceeEEEcCC----CcEEEEec
Confidence            456678887754   6666654          58899999877542  2222 2 2346889999999    77655543


Q ss_pred             C-Cc-cE-EEecCCCccc-------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeee--------eeecccce
Q 020107           90 A-DG-GL-LRDITGEKIS-------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ--------QWKAHEFE  151 (331)
Q Consensus        90 ~-dg-~i-iw~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~  151 (331)
                      . ++ .+ .++..+++..       ......++..+.+..+++-..++.|..+|...++.....        .....-..
T Consensus        91 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A           91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             cCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            3 23 24 3444443321       112233444444433444445889999997653211110        00011112


Q ss_pred             eEEEeeCCCCCcEEEEEcCCCeEEEEEccC-CCc--eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107          152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRE-SPF--KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI  228 (331)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  228 (331)
                      ...+  +|+.+.++++-...+.|..+|+.. ++.  ...+..    ......+++.+ +++++++....+.|.++|.. +
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G  242 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-R  242 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-C
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-C
Confidence            3444  663445666667788999999875 321  112211    12456688899 88887777778899999875 2


Q ss_pred             CCCcee-eeeecCCceEEEEEC---CCCCCeEEEEEe
Q 020107          229 SKPVNE-TSVCLGGGVWRIKHH---PFIPGLVLAACM  261 (331)
Q Consensus       229 ~~~~~~-~~~~~~~~v~~~~~~---~~~~~~~~~~~~  261 (331)
                       +.... .........++++|.   |++ +.++++..
T Consensus       243 -~~~~~~~~~~~~~~p~~~a~~g~~~d~-~~LyVt~~  277 (306)
T 2p4o_A          243 -STTIIAQAEQGVIGSTAVAFGQTEGDC-TAIYVVTN  277 (306)
T ss_dssp             -CEEEEECGGGTCTTEEEEEECCSTTTT-TEEEEEEC
T ss_pred             -CEEEEeecccccCCceEEEEecccCCC-CEEEEECC
Confidence             22111 011122568999998   776 44444443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.38  E-value=0.00072  Score=57.05  Aligned_cols=222  Identities=8%  Similarity=-0.039  Sum_probs=126.8

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc-CCccE-EEecCCCc----c------cCccEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD-ADGGL-LRDITGEK----I------SSSMCLC  110 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i-iw~~~~~~----~------~~~~v~~  110 (331)
                      ...|+..+++...  ...+. .....+..|+|.+.    +..|..+. ..+.| .+++....    .      .......
T Consensus        91 ~~~I~~i~l~~~~--~~~~~-~~~~~~~~l~~d~~----~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           91 RHEVRKMTLDRSE--YTSLI-PNLRNVVALDTEVA----SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             TTEEEEECTTSCS--CEEEE-CSCSCEEEEEEETT----TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             cceeEEEccCCcc--eeEec-cccCcceEEeeeec----cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            6788888888764  33332 23456889999987    44555544 45555 55554311    1      1234568


Q ss_pred             EEEcCCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-CCeEEEEEccCCCceeee
Q 020107          111 LEWNPSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-DCKFSGWDIRESPFKLAF  188 (331)
Q Consensus       111 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~  188 (331)
                      +++.+.+..|+.+ ...+.|.+.+++....  ...+.........++++|..+.++++-.. .+.|...++.........
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~--~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSE--EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCce--EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            8888755555555 4578999999876433  22222233457899999855555555433 478888888754432222


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee--cCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC--LGGGVWRIKHHPFIPGLVLAACMHNGFA  266 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~  266 (331)
                      ..   .-.....|+++|..+.+.++-...+.|..+|+....  ...+...  .......++...+  .++.+-...+.  
T Consensus       242 ~~---~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~--~~~~~~~~~~l~~P~gl~v~~~--~lywtd~~~~~--  312 (400)
T 3p5b_L          242 TE---NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN--RKTILEDEKRLAHPFSLAVFED--KVFWTDIINEA--  312 (400)
T ss_dssp             CS---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--CEEEEECSSTTSSEEEEEEETT--EEEEEESSSCS--
T ss_pred             EC---CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc--cEEEEeCCCCCCCCEEEEEeCC--EEEEecCCCCe--
Confidence            22   235678999998344444444567789999987532  2221121  2234556776433  55555545555  


Q ss_pred             EEEEcCcccceeEEee
Q 020107          267 VVKVGGEKAEVLETYA  282 (331)
Q Consensus       267 ~~~~~~~~~~~~~~~~  282 (331)
                      |+.+....++.+..+.
T Consensus       313 V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          313 IFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEEESSSCCCCEEEE
T ss_pred             EEEEEcCCCCceEEEe
Confidence            4444333344444443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.38  E-value=5e-05  Score=68.63  Aligned_cols=167  Identities=12%  Similarity=0.084  Sum_probs=97.2

Q ss_pred             EEEEcCCCCeEEEEecCCe-------------------EEEEEccccceeeeeeeeccc-------ceeEEEeeCCCCCc
Q 020107          110 CLEWNPSATSITVGLSDGS-------------------VSIVSVVESQLEVLQQWKAHE-------FELWATSFDVHQPH  163 (331)
Q Consensus       110 ~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~  163 (331)
                      .+++.|+...+++++.++.                   |..+|.++++..-......|.       .+.....+.. +++
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~  312 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGK  312 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCc
Confidence            4678888888988887763                   999999998753222222222       1222222221 333


Q ss_pred             ---EEEEEcCCCeEEEEEccCCCceeeeeccc---------CCCcc------------------------eEEEEEecCC
Q 020107          164 ---MVYTGSDDCKFSGWDIRESPFKLAFQNSK---------IHKMG------------------------VCCIASIPSD  207 (331)
Q Consensus       164 ---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~------------------------v~~~~~~~~~  207 (331)
                         .++.++.+|.++++|.++++.+.......         ....+                        -..++++| +
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~  391 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-G  391 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-C
Confidence               68889999999999999998653322100         00000                        01256777 4


Q ss_pred             CCEEEEE------------------------------------ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107          208 SNTLLTG------------------------------------SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       208 ~~~l~~~------------------------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  251 (331)
                      ..++++.                                    ..+|.|..||+.+++ .+-+  .....+.....+...
T Consensus       392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~-~~W~--~~~~~~~~~~~~~t~  468 (668)
T 1kv9_A          392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK-AAWK--VPYPTHWNGGTLSTA  468 (668)
T ss_dssp             TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE-EEEE--EEESSSCCCCEEEET
T ss_pred             CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc-EEEE--ccCCCCCcCceeEeC
Confidence            4444431                                    124789999998863 3333  233333333333333


Q ss_pred             CCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107          252 IPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH  284 (331)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  284 (331)
                      + +++++++.++.++.++...  ++.+..++..
T Consensus       469 g-g~vf~g~~dg~l~a~d~~t--G~~l~~~~~~  498 (668)
T 1kv9_A          469 G-NLVFQGTAAGQMHAYSADK--GEALWQFEAQ  498 (668)
T ss_dssp             T-TEEEEECTTSEEEEEETTT--CCEEEEEECS
T ss_pred             C-CEEEEECCcccchhhhhhc--ChhheEecCC
Confidence            3 6777777778777777654  6777777643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.37  E-value=0.00054  Score=55.83  Aligned_cols=202  Identities=9%  Similarity=-0.113  Sum_probs=121.1

Q ss_pred             cEEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107          107 MCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK  185 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  185 (331)
                      ....++|++.+..|+.+. ..+.|..+++...... ...+...-.....+++.+.+++++++-...+.|.++++......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~-~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC-CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce-EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            456888998766665554 4788999998765321 11122222345678887656677777777889999998754432


Q ss_pred             eeeecccCCCcceEEEEEecCCCCEEEEEe--cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107          186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGS--YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN  263 (331)
Q Consensus       186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  263 (331)
                      ..+..   .......+++.| .+..|+...  ..+.|...++...  ....+....-.....|+++|++..++++-...+
T Consensus       115 ~l~~~---~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~  188 (318)
T 3sov_A          115 VLFWQ---ELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN  188 (318)
T ss_dssp             EEECS---SCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSC--SCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             EEEeC---CCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCC--CeEEEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence            22222   345678999998 544444444  3577888887642  222211222345689999997644555544556


Q ss_pred             cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      .|..+++.....+.+  ..+......++++..+          .++.+-. ..+.|..++..++.
T Consensus       189 ~I~~~d~dG~~~~~~--~~~~~~~P~glav~~~----------~lywtd~-~~~~V~~~~~~~G~  240 (318)
T 3sov_A          189 FIHKSNLDGTNRQAV--VKGSLPHPFALTLFED----------ILYWTDW-STHSILACNKYTGE  240 (318)
T ss_dssp             EEEEEETTSCSCEEE--ECSCCSCEEEEEEETT----------EEEEEET-TTTEEEEEETTTCC
T ss_pred             EEEEEcCCCCceEEE--ecCCCCCceEEEEeCC----------EEEEEec-CCCeEEEEECCCCC
Confidence            655666543211211  2223344567777543          4666655 78889988886654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.37  E-value=0.00099  Score=59.11  Aligned_cols=55  Identities=15%  Similarity=0.068  Sum_probs=37.9

Q ss_pred             CeEEEEEccCCCceeeeecccCCC--------cceEEEEEe-cCCC---CEEEEEecCCeEEEEEecCCC
Q 020107          172 CKFSGWDIRESPFKLAFQNSKIHK--------MGVCCIASI-PSDS---NTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~---~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      +.|.-+|.++++.+..++. ..|.        .++. +... . ++   ..++.++.+|.++++|.++++
T Consensus       291 ~~v~AlD~~TG~~~W~~q~-~~~d~wd~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~  357 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQH-TPNDAWDFSGNNELVL-FDYKAK-DGKIVKATAHADRNGFFYVVDRSNGK  357 (582)
T ss_dssp             SEEEEECTTTCCEEEEEES-STTCCSCCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ceEEEEeCCCCCEEEEEeC-CCCCcccccCCCCcEE-EeeecC-CCCEEEEEEEECCCceEEEEECCCCC
Confidence            6899999999988777665 2132        1221 2222 3 55   478889999999999998863

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.37  E-value=0.00024  Score=63.08  Aligned_cols=55  Identities=15%  Similarity=0.120  Sum_probs=37.9

Q ss_pred             CeEEEEEccCCCceeeeecccCCC--------cceEEEEEe-cCCC---CEEEEEecCCeEEEEEecCCC
Q 020107          172 CKFSGWDIRESPFKLAFQNSKIHK--------MGVCCIASI-PSDS---NTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~---~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      +.|.-+|.++++.+..++. ..|.        .++. +... . ++   ..++.++.+|.+.++|.++++
T Consensus       278 ~sv~Ald~~TG~~~W~~q~-~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~  344 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQK-TPHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGA  344 (599)
T ss_dssp             SEEEEEETTTCCEEEEEES-STTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ceEEEEeCCCCceeeEeec-CCCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEEEEECCCCC
Confidence            4899999999988777665 2232        1222 2222 3 56   567888899999999998864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.34  E-value=0.00045  Score=53.27  Aligned_cols=159  Identities=9%  Similarity=-0.021  Sum_probs=97.8

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEe--EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEc
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIF--DIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWN  114 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~  114 (331)
                      ...|+.+|+++++ .+..+ ... ....  .++...     +++......++.+ ++|..+.+..     ...-..+  .
T Consensus        42 ~S~v~~vD~~tgk-v~~~~-~l~-~~~fgeGi~~~~-----~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl--t  111 (243)
T 3mbr_X           42 RSSVRKVDLETGR-ILQRA-EVP-PPYFGAGIVAWR-----DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWAL--T  111 (243)
T ss_dssp             SCEEEEEETTTCC-EEEEE-ECC-TTCCEEEEEEET-----TEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEE--E
T ss_pred             CceEEEEECCCCC-EEEEE-eCC-CCcceeEEEEeC-----CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEE--e
Confidence            4589999999886 33332 211 2222  333332     3344445556666 8888776542     1122233  3


Q ss_pred             CCCCeEEEEecCCeEEEEEccccceeeeeeee--cccc---eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee
Q 020107          115 PSATSITVGLSDGSVSIVSVVESQLEVLQQWK--AHEF---ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ  189 (331)
Q Consensus       115 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  189 (331)
                      ++++.|+++..++.|.++|..+.+.  +..+.  .+..   .++.+.|.  ++..++..-.+..|.+.|.++++....+.
T Consensus       112 ~dg~~L~vSdgs~~l~~iDp~t~~~--~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          112 SDDSHLYMSDGTAVIRKLDPDTLQQ--VGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             ECSSCEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred             eCCCEEEEECCCCeEEEEeCCCCeE--EEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            5778888888899999999988654  33333  2222   34566665  55666666678899999999999877766


Q ss_pred             ccc----------CCCcceEEEEEecCCCCEEEEEec
Q 020107          190 NSK----------IHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       190 ~~~----------~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                      ...          ....-.+.|+++| +++.|++.+.
T Consensus       188 l~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~lfVTGK  223 (243)
T 3mbr_X          188 LQALVPDADALTDSTNDVLNGIAFDA-EHDRLFVTGK  223 (243)
T ss_dssp             CGGGSTTTTSCCCTTSSCEEEEEEET-TTTEEEEEET
T ss_pred             CCcCccccccccCCcCCceEEEEEcC-CCCEEEEECC
Confidence            421          1224579999999 5544444443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.34  E-value=0.00047  Score=63.23  Aligned_cols=206  Identities=9%  Similarity=-0.065  Sum_probs=116.2

Q ss_pred             ccEEEEEEcCCCCeEEEEe-cCCeEEEEEccccce--eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC
Q 020107          106 SMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQL--EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES  182 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  182 (331)
                      ..+..|+|++....|+.+. ..+.|+.+++.....  .....+.........|++.+..++++++-...+.|.+.++...
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence            4567899998666665554 467888888875211  1122222233456678887645677777778899999999855


Q ss_pred             CceeeeecccCCCcceEEEEEecCCCCEEEEEecC-CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107          183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  261 (331)
                      .....+..   .-.....|++.|..+.++++-... +.|...++...  ....+....-.....|++.+....++++-..
T Consensus       504 ~~~~l~~~---~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~  578 (791)
T 3m0c_C          504 KRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTENIQWPNGITLDLLSGRLYWVDSK  578 (791)
T ss_dssp             SEEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEEeC---CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC--ceEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence            43333322   345689999999334444443233 67888888653  2333223333578899999876344444444


Q ss_pred             cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          262 HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .+.|..+++.......+..-.+.-....+|++..+          +++++-. ..+.|...+..++
T Consensus       579 ~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~----------~lYwtD~-~~~~I~~~dk~tG  633 (791)
T 3m0c_C          579 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED----------KVFWTDI-INEAIFSANRLTG  633 (791)
T ss_dssp             TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT----------EEEEEET-TTTEEEEEETTTC
T ss_pred             CCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC----------EEEEEEC-CCCEEEEEeCCCC
Confidence            45555555543212222111112223446666433          3555554 6677777765444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.33  E-value=0.0019  Score=59.62  Aligned_cols=253  Identities=9%  Similarity=0.055  Sum_probs=144.0

Q ss_pred             CCcEEEEeccCcccceEEeEe--------------eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC------
Q 020107           43 NGSISLFNVNAEEKNLELLYR--------------MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE------  101 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~------  101 (331)
                      .+-|.+++.....  +.....              .....|.++...++    +. |-.|+.++-+ .++....      
T Consensus       277 ~~Gl~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~----g~-lWigt~~~Gl~~~~~~~~~~~~~~  349 (781)
T 3v9f_A          277 LNGIMILDLQQNQ--FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF----NN-IWIGTWGGGINFISNAPPTFHTWS  349 (781)
T ss_dssp             SSCEEEEETTCC-----------CEEECBCSSTTSBSSSCEEEEEECSS----CC-EEEEEBSSCEEEECSSCCSCEEEC
T ss_pred             CCCeEEECCCCCe--eeeeeccccccccCCCCCCCCCCCeEEEEEEeCC----CC-EEEEecCCeEEEeCCCCCcceeec
Confidence            4668888877653  222111              12346888888777    54 4455544444 5544322      


Q ss_pred             ---------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeee-eecccceeEEEeeCCCCCcEEEEEcCC
Q 020107          102 ---------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQ-WKAHEFELWATSFDVHQPHMVYTGSDD  171 (331)
Q Consensus       102 ---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d  171 (331)
                               ......|.++...+++. |.+|+.++-|..++..++....... .......|.++...+ ++. |..|+.+
T Consensus       350 ~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~  426 (781)
T 3v9f_A          350 YSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYL  426 (781)
T ss_dssp             ----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETT
T ss_pred             cCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEecc
Confidence                     12345688888887765 5566766778889987654322210 012335688888775 444 4456766


Q ss_pred             CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec-----CCceEEE
Q 020107          172 CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL-----GGGVWRI  246 (331)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~  246 (331)
                      +-|..+|..+++.. .+.........|.++...+ ++. |..|+. +-|..||..+.. .... ....     ...|.++
T Consensus       427 ~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~~~~~~~-~~~~-~~~~~~~~~~~~i~~i  500 (781)
T 3v9f_A          427 GNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVIDLASKK-VIHH-YDTSNSQLLENFVRSI  500 (781)
T ss_dssp             EEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEEESSSSS-CCEE-ECTTTSSCSCSCEEEE
T ss_pred             CCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEEeCCCCe-EEec-ccCcccccccceeEEE
Confidence            77889998776532 2221011356789998877 554 455555 558889987642 2111 1111     3578899


Q ss_pred             EECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec----CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107          247 KHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK----HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW  322 (331)
                      ...+++  .+.+++..+++..  +... ......+..    ....|.++...+++         . |..++ .+|.|..|
T Consensus       501 ~~d~~g--~lWigt~~~Gl~~--~~~~-~~~~~~~~~~~~l~~~~i~~i~~d~~g---------~-lWi~T-~~Glv~~~  564 (781)
T 3v9f_A          501 AQDSEG--RFWIGTFGGGVGI--YTPD-MQLVRKFNQYEGFCSNTINQIYRSSKG---------Q-MWLAT-GEGLVCFP  564 (781)
T ss_dssp             EECTTC--CEEEEESSSCEEE--ECTT-CCEEEEECTTTTCSCSCEEEEEECTTS---------C-EEEEE-TTEEEEES
T ss_pred             EEcCCC--CEEEEEcCCCEEE--EeCC-CCeEEEccCCCCCCCCeeEEEEECCCC---------C-EEEEE-CCCceEEE
Confidence            888874  4555555567444  4333 223333331    23467888887776         3 44445 56655888


Q ss_pred             cCCCc
Q 020107          323 MPESD  327 (331)
Q Consensus       323 ~~~~~  327 (331)
                      |..++
T Consensus       565 d~~~~  569 (781)
T 3v9f_A          565 SARNF  569 (781)
T ss_dssp             CTTTC
T ss_pred             CCCCC
Confidence            87665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.26  E-value=0.00082  Score=52.53  Aligned_cols=194  Identities=9%  Similarity=0.053  Sum_probs=120.8

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+..++|.|...  .++|+..          .++.|...|.. +. .++.+.-.-......|++.++    +.++++.-
T Consensus        27 ~~lSGla~~~~~~--~L~aV~d----------~~~~I~~ld~~-g~-v~~~i~l~g~~D~EGIa~~~~----g~~~vs~E   88 (255)
T 3qqz_A           27 NNISSLTWSAQSN--TLFSTIN----------KPAAIVEMTTN-GD-LIRTIPLDFVKDLETIEYIGD----NQFVISDE   88 (255)
T ss_dssp             SCEEEEEEETTTT--EEEEEEE----------TTEEEEEEETT-CC-EEEEEECSSCSSEEEEEECST----TEEEEEET
T ss_pred             cCcceeEEeCCCC--EEEEEEC----------CCCeEEEEeCC-CC-EEEEEecCCCCChHHeEEeCC----CEEEEEEC
Confidence            4578889998752  4566565          68888888887 32 344332222245778888877    66656554


Q ss_pred             CCccE-EEecCCC---------------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc-ceeeeeeee------
Q 020107           90 ADGGL-LRDITGE---------------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES-QLEVLQQWK------  146 (331)
Q Consensus        90 ~dg~i-iw~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~------  146 (331)
                      .++.+ +.++...               ...+.....++|+|.++.|+++.+.....+|.+..- ....+..+.      
T Consensus        89 ~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~  168 (255)
T 3qqz_A           89 RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR  168 (255)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH
T ss_pred             CCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc
Confidence            55555 3332211               112445689999999988888887666666665410 000011111      


Q ss_pred             -cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC------CcceEEEEEecCCCCEEEEEecCCe
Q 020107          147 -AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH------KMGVCCIASIPSDSNTLLTGSYDEY  219 (331)
Q Consensus       147 -~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~d~~  219 (331)
                       .+...+.+++++|..+++++....+..|.++|.. ++....+...++.      -...-.|+|.+ ++++.++ ++.+.
T Consensus       169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~  245 (255)
T 3qqz_A          169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIV-SEPNR  245 (255)
T ss_dssp             TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEE-ETTTE
T ss_pred             ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEE-cCCce
Confidence             1233578999999888888888899999999977 4455555552211      12568899999 8875554 67665


Q ss_pred             EEEEE
Q 020107          220 LRVWD  224 (331)
Q Consensus       220 i~iwd  224 (331)
                      +..|.
T Consensus       246 ~y~f~  250 (255)
T 3qqz_A          246 FYRFT  250 (255)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=0.0015  Score=55.62  Aligned_cols=150  Identities=13%  Similarity=0.104  Sum_probs=93.7

Q ss_pred             EeEEEEcC-CCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEec-CC----eEEEEEccc
Q 020107           69 IFDIKWSP-VGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLS-DG----SVSIVSVVE  136 (331)
Q Consensus        69 v~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~  136 (331)
                      ...|+++| +    +..|.++...+.+ .+++.+...     .......++|+++++.|+++.. ++    .+.+++. .
T Consensus       139 P~~lavdp~~----~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~  213 (430)
T 3tc9_A          139 AVWLSFDPKN----HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E  213 (430)
T ss_dssp             CCEEEEETTE----EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred             CCEEEECCCC----CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence            56788887 4    3456555554555 666655432     2345778999999997766654 22    3444443 3


Q ss_pred             cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE-EEEEe
Q 020107          137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT-LLTGS  215 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~  215 (331)
                      +.......+.. ......++++|.++.++++-..++.|..+|...+........ . .......|+|+| ++++ +++-.
T Consensus       214 g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-~-~~~~P~gia~~p-dG~~lyv~d~  289 (430)
T 3tc9_A          214 SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI-Q-DSGWEFHIQFHP-SGNYAYIVVV  289 (430)
T ss_dssp             GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC-S-SSSCCEEEEECT-TSSEEEEEET
T ss_pred             Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc-C-CCCcceeEEEcC-CCCEEEEEEC
Confidence            33321122221 234567889985667777777788999999986643222222 1 224578999999 8884 45555


Q ss_pred             cCCeEEEEEecC
Q 020107          216 YDEYLRVWDVRS  227 (331)
Q Consensus       216 ~d~~i~iwd~~~  227 (331)
                      ..+.|..++...
T Consensus       290 ~~~~I~~~~~d~  301 (430)
T 3tc9_A          290 NQHYILRSDYDW  301 (430)
T ss_dssp             TTTEEEEEEEET
T ss_pred             CCCEEEEEeCCc
Confidence            678999988874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.25  E-value=7.5e-06  Score=74.26  Aligned_cols=203  Identities=9%  Similarity=-0.070  Sum_probs=115.0

Q ss_pred             cEEEEEEcCCCCeEEEEec-CCeEEEEEccc----cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107          107 MCLCLEWNPSATSITVGLS-DGSVSIVSVVE----SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE  181 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  181 (331)
                      .+..++|++.+..|+.+.. .+.|+.+++..    ...  ...+.........+++.+..++++++-...+.|.++++..
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~--~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg  484 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  484 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCC--CCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcce--EEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence            4567889987777776654 67899998875    111  1112111223456777754566666666778999999876


Q ss_pred             CCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE
Q 020107          182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC  260 (331)
Q Consensus       182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  260 (331)
                      ......+..   .......|+++|..+.++++-... +.|..+++.....  ..+....-.....|+|+|++..++++-.
T Consensus       485 ~~~~~l~~~---~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~  559 (699)
T 1n7d_A          485 VKRKTLFRE---QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDS  559 (699)
T ss_dssp             CCEEEECCC---SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred             CceEEEEeC---CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEeCCCCCccEEEEeccCCEEEEEec
Confidence            543222222   234467888998344444443233 6788887764322  1111122345678999998756666655


Q ss_pred             ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          261 MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ..+.|..+++.....+.+...........++++..+          .++++.. ..+.|..++..++
T Consensus       560 ~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~----------~lywtd~-~~~~V~~~d~~~G  615 (699)
T 1n7d_A          560 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED----------KVFWTDI-INEAIFSANRLTG  615 (699)
T ss_dssp             TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT----------EEEEECS-TTTCEEEEETTTE
T ss_pred             CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC----------EEEEEeC-CCCeEEEEEccCC
Confidence            556655555543211111111111223445666544          4666665 7889998887654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.24  E-value=0.0017  Score=55.36  Aligned_cols=149  Identities=11%  Similarity=0.061  Sum_probs=90.2

Q ss_pred             cceeEeeecC-CCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           11 NADAVEFCPQ-DSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        11 ~~~~v~~~~~-~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      .+..|++.|. .   ..|.+..          ..+.|+.++++...  +..+.. .......|+|+++    ++.|+++.
T Consensus       138 ~P~~lavdp~~~---g~Lyv~d----------~~~~I~~id~~~~~--v~~~~~-~~~~P~~ia~d~~----G~~lyvad  197 (430)
T 3tc9_A          138 GAVWLSFDPKNH---NHLYLVG----------EQHPTRLIDFEKEY--VSTVYS-GLSKVRTICWTHE----ADSMIITN  197 (430)
T ss_dssp             CCCEEEEETTEE---EEEEEEE----------BTEEEEEEETTTTE--EEEEEC-CCSCEEEEEECTT----SSEEEEEE
T ss_pred             CCCEEEECCCCC---CeEEEEe----------CCCcEEEEECCCCE--EEEEec-CCCCcceEEEeCC----CCEEEEEe
Confidence            4567777763 3   3444443          23788888887754  444422 3455889999999    77555554


Q ss_pred             C-Ccc----EEEecCCCccc-------CccEEEEEEcC-CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107           90 A-DGG----LLRDITGEKIS-------SSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS  156 (331)
Q Consensus        90 ~-dg~----iiw~~~~~~~~-------~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  156 (331)
                      . ++.    ++|........       ......++++| ++..+++-..++.|..++...+....+.... .......++
T Consensus       198 ~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia  276 (430)
T 3tc9_A          198 DQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQ  276 (430)
T ss_dssp             CCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEE
T ss_pred             CCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEE
Confidence            4 222    23322222111       12345788999 5555555556889999998865432222222 123467899


Q ss_pred             eCCCCCc-EEEEEcCCCeEEEEEccC
Q 020107          157 FDVHQPH-MVYTGSDDCKFSGWDIRE  181 (331)
Q Consensus       157 ~~~~~~~-~l~~~~~dg~i~i~d~~~  181 (331)
                      |+| +++ ++++-...+.|..++...
T Consensus       277 ~~p-dG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          277 FHP-SGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             ECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred             EcC-CCCEEEEEECCCCEEEEEeCCc
Confidence            999 666 666666788999988764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.23  E-value=0.00055  Score=60.64  Aligned_cols=178  Identities=12%  Similarity=0.026  Sum_probs=98.9

Q ss_pred             EEEcCCCCeEEEEecC----------------CeEEEEEccccceeeeeeeeccc--------ceeEEEeeCCCCC---c
Q 020107          111 LEWNPSATSITVGLSD----------------GSVSIVSVVESQLEVLQQWKAHE--------FELWATSFDVHQP---H  163 (331)
Q Consensus       111 ~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~---~  163 (331)
                      +++.++...++.+..+                +.|..+|.++++..-......|.        .++. +...+ ++   .
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~  317 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTP  317 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEE
Confidence            4566766777776642                36899999988753222222221        1111 11112 34   3


Q ss_pred             EEEEEcCCCeEEEEEccCCCceeeeecccC----------CCcce--------------------------EEEEEecCC
Q 020107          164 MVYTGSDDCKFSGWDIRESPFKLAFQNSKI----------HKMGV--------------------------CCIASIPSD  207 (331)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~v--------------------------~~~~~~~~~  207 (331)
                      .++.++.+|.+.++|..+++.+..+.....          ...++                          ..++++| +
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~  396 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-E  396 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-T
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-C
Confidence            577888999999999999986655443110          00111                          2357777 5


Q ss_pred             CCEEEEEe-------------------------------------cCCeEEEEEecCCCCCceeeeeecCCceEEEEECC
Q 020107          208 SNTLLTGS-------------------------------------YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP  250 (331)
Q Consensus       208 ~~~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  250 (331)
                      ..++++..                                     .++.|..||+.+++ .+-+  ..+...+.......
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~-~~W~--~~~~~~~~~~~~~t  473 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK-AKWT--KWEKFAAWGGTLYT  473 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC-EEEE--EEESSCCCSBCEEE
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC-EEEE--ecCCCCccceeEEE
Confidence            55665543                                     24788899988864 3333  23333333222222


Q ss_pred             CCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc-ceeeeeecCCC
Q 020107          251 FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS-LAYGADWQRGR  297 (331)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~  297 (331)
                      .+ +.+++++.++.++.++...  ++.+.++..... .-.-+.+..++
T Consensus       474 ~g-g~v~~g~~dg~l~a~D~~t--G~~lw~~~~~~~~~~~p~~~~~~G  518 (571)
T 2ad6_A          474 KG-GLVWYATLDGYLKALDNKD--GKELWNFKMPSGGIGSPMTYSFKG  518 (571)
T ss_dssp             TT-TEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETT
T ss_pred             CC-CEEEEEcCCCeEEEEECCC--CCEEEEEeCCCCcEeeeEEEEECC
Confidence            23 6677777778877777654  677777763322 11223455666

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.21  E-value=0.0011  Score=51.81  Aligned_cols=201  Identities=10%  Similarity=0.067  Sum_probs=121.3

Q ss_pred             ccEEEEEEcCCCCeEE-EEecCCeEEEEEccccceeeeeeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107          106 SMCLCLEWNPSATSIT-VGLSDGSVSIVSVVESQLEVLQQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP  183 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  183 (331)
                      ..+..++|+|+++.|+ +...++.|...|.. ++.  +..+. ........+++.+ ++.++++.-.++.+.++++....
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v--~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL--IRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE--EEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTC
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE--EEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCC
Confidence            4688999999876655 46678889999987 554  33332 1224577888886 66776776677899999887654


Q ss_pred             ce---eeeec---ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC--CCCceeee------eecCCceEEEEEC
Q 020107          184 FK---LAFQN---SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI--SKPVNETS------VCLGGGVWRIKHH  249 (331)
Q Consensus       184 ~~---~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~------~~~~~~v~~~~~~  249 (331)
                      .+   .....   ........-.|+|+| .++.|.++.+.....+|.++..  ...+....      ..+...+..++++
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d  181 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN  181 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred             eeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence            21   12211   012455679999999 7766666666555666666521  11122110      0123457899999


Q ss_pred             CCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCC---------cceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107          250 PFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHG---------SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR  320 (331)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~  320 (331)
                      |....+++.+.....  ++.+... ++.+..+.-..         ..-.+++|.+++         ++.++ + +.+.++
T Consensus       182 p~tg~lliLS~~s~~--L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G---------~lyIv-s-E~n~~y  247 (255)
T 3qqz_A          182 QQKNTLLVLSHESRA--LQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG---------NIYIV-S-EPNRFY  247 (255)
T ss_dssp             TTTTEEEEEETTTTE--EEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC---------CEEEE-E-TTTEEE
T ss_pred             CCCCeEEEEECCCCe--EEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC---------CEEEE-c-CCceEE
Confidence            987444444444444  4444333 55555444211         245789999998         45444 5 677777


Q ss_pred             EEcCC
Q 020107          321 IWMPE  325 (331)
Q Consensus       321 iW~~~  325 (331)
                      .+...
T Consensus       248 ~f~~~  252 (255)
T 3qqz_A          248 RFTPQ  252 (255)
T ss_dssp             EEEC-
T ss_pred             EEEec
Confidence            76544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.20  E-value=0.0021  Score=54.82  Aligned_cols=235  Identities=8%  Similarity=-0.009  Sum_probs=127.5

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+..|++.|.+..++++++-.           .+.|+.+++.++.  +..+. ........++++++    +.++++-..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~-----------~~~I~~id~~~g~--v~~~~-~~~~~P~giavd~d----G~lyVad~~  201 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQ-----------RDAFRHVDFVNQY--VDIKT-TNIGQCADVNFTLN----GDMVVVDDQ  201 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECB-----------TSCEEEEETTTTE--EEEEC-CCCSCEEEEEECTT----CCEEEEECC
T ss_pred             CCceEEEccccCCCEEEEEeC-----------CCCEEEEECCCCE--EEEee-cCCCCccEEEECCC----CCEEEEcCC
Confidence            356777777411124444433           3789999987654  44432 23445899999999    775544432


Q ss_pred             C---cc-EEEecCCCcc-------cCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccce-eeeeeeecccceeEEEee
Q 020107           91 D---GG-LLRDITGEKI-------SSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQL-EVLQQWKAHEFELWATSF  157 (331)
Q Consensus        91 d---g~-iiw~~~~~~~-------~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~  157 (331)
                      .   .. +++-......       .-.....++++| ++.+.++-..++.|+.++..++.. ..+.... ....-..++|
T Consensus       202 ~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~  280 (433)
T 4hw6_A          202 SSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVW  280 (433)
T ss_dssp             SCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEE
T ss_pred             CCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEE
Confidence            2   11 2221111111       112335678888 555444444678999999886653 1221111 1222346999


Q ss_pred             CCCCCc-EEEEEcCCCeEEEEEccC--CCc--eeeeecc---cC---------CCcceEEEEE---------ecCCCCEE
Q 020107          158 DVHQPH-MVYTGSDDCKFSGWDIRE--SPF--KLAFQNS---KI---------HKMGVCCIAS---------IPSDSNTL  211 (331)
Q Consensus       158 ~~~~~~-~l~~~~~dg~i~i~d~~~--~~~--~~~~~~~---~~---------~~~~v~~~~~---------~~~~~~~l  211 (331)
                      +| +++ ++++-...+.|+.++...  +..  ...+...   .+         .-.....+++         .+ +++++
T Consensus       281 dp-dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~ly  358 (433)
T 4hw6_A          281 HP-TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFY  358 (433)
T ss_dssp             CT-TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEE
T ss_pred             eC-CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEE
Confidence            99 555 666666778999988753  221  1111110   00         1123677888         55 66777


Q ss_pred             EEEecCCeEEEEEecCCCCCceeeeeec------------------CCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          212 LTGSYDEYLRVWDVRSISKPVNETSVCL------------------GGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                      ++-...+.|+.++.. + . +.. ..+.                  -.....|++.|....++++-...+.|+.+.+
T Consensus       359 vaD~~n~~I~~~~~~-G-~-v~t-~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          359 FCDRDSHTVRVLTPE-G-R-VTT-YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EEETTTTEEEEECTT-S-E-EEE-EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEECCCCEEEEECCC-C-C-EEE-EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            776677889998852 2 1 222 1111                  1236789999433244444445556555544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.05  E-value=0.0028  Score=51.66  Aligned_cols=201  Identities=10%  Similarity=0.173  Sum_probs=115.5

Q ss_pred             cCCCCCCCCeEEEEcCCccE-EEecCCCccc---CccEEEEEEcC----CCCe--EEEE-ec---CCeEEEEEcc--ccc
Q 020107           75 SPVGGNAGPFLAQADADGGL-LRDITGEKIS---SSMCLCLEWNP----SATS--ITVG-LS---DGSVSIVSVV--ESQ  138 (331)
Q Consensus        75 ~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~---~~~v~~~~~~~----~~~~--l~~~-~~---dg~i~i~d~~--~~~  138 (331)
                      +|.++. ..+++.....+-+ ++++......   ...++.+..-|    .++.  ++.+ ..   +++|.+|++.  ++.
T Consensus        34 ~~~dp~-~s~ii~t~k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           34 DPKTPQ-NSKLITTNKKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             CSSCGG-GCEEEEEETTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred             CCCCCC-ccEEEEEcCCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence            455443 4455555555555 8888554432   34556655544    2222  3333 33   4789999774  333


Q ss_pred             eeeeee----eecccceeEEEee--CCCCCc-EEEEEcCCCeEEEEEccC-------CCceeeeecccCCCcceEEEEEe
Q 020107          139 LEVLQQ----WKAHEFELWATSF--DVHQPH-MVYTGSDDCKFSGWDIRE-------SPFKLAFQNSKIHKMGVCCIASI  204 (331)
Q Consensus       139 ~~~~~~----~~~~~~~v~~~~~--~~~~~~-~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~v~~~~~~  204 (331)
                      +..+..    +......+..+++  +|..+. ++++...+|.+..|++..       .+.+..+..    ...+-.+...
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----gsq~EgcvvD  188 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM----NSQTEGMAAD  188 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----SSCEEEEEEE
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----CCCcceEEEc
Confidence            322211    1111145667777  664443 678888899999999842       233445554    4578888888


Q ss_pred             cCCCCEEEEEecCCeEEEEEecCCC----CCceeee-eecCCceEEEEE--CCCCCCeEEEEE-ecCcEEEEEEcCcccc
Q 020107          205 PSDSNTLLTGSYDEYLRVWDVRSIS----KPVNETS-VCLGGGVWRIKH--HPFIPGLVLAAC-MHNGFAVVKVGGEKAE  276 (331)
Q Consensus       205 ~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~-~~~~~~v~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  276 (331)
                      + ....|+.+-++.-|..+|.+...    +.+...- ......+..|+.  .+++.+++++++ .++.+.+|+.... .+
T Consensus       189 d-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~-~~  266 (355)
T 3amr_A          189 D-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK-NK  266 (355)
T ss_dssp             T-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT-CC
T ss_pred             C-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC-Cc
Confidence            8 77889999998776666654321    1121100 111246777877  555555777777 5667777777532 45


Q ss_pred             eeEEee
Q 020107          277 VLETYA  282 (331)
Q Consensus       277 ~~~~~~  282 (331)
                      .+..|.
T Consensus       267 ~vg~f~  272 (355)
T 3amr_A          267 YVADFR  272 (355)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.02  E-value=0.0019  Score=57.38  Aligned_cols=77  Identities=9%  Similarity=0.068  Sum_probs=49.5

Q ss_pred             EEEcCCCCeEEEEecC----------------CeEEEEEccccceeeeeeeeccc--------ceeEEEeeC-CCCC---
Q 020107          111 LEWNPSATSITVGLSD----------------GSVSIVSVVESQLEVLQQWKAHE--------FELWATSFD-VHQP---  162 (331)
Q Consensus       111 ~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~---  162 (331)
                      +++.+....++.+..+                +.|..+|.++++..-......|.        .++. +... . ++   
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~~  323 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DGKAR  323 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECT-TSCEE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-Eecccc-CCcEE
Confidence            4566777788887765                38999999998763323332232        1121 2221 2 34   


Q ss_pred             cEEEEEcCCCeEEEEEccCCCceeeee
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLAFQ  189 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~  189 (331)
                      ..++.++.+|.+.++|.++++.+....
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCcEEEEEECCCCCEeeccc
Confidence            567778999999999999998765443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.00  E-value=0.0003  Score=63.57  Aligned_cols=187  Identities=12%  Similarity=0.032  Sum_probs=102.3

Q ss_pred             CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCc-EeEEEEcCCCCCCCCeEEEEc-CCcc-----E-E
Q 020107           24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG-IFDIKWSPVGGNAGPFLAQAD-ADGG-----L-L   95 (331)
Q Consensus        24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~-~dg~-----i-i   95 (331)
                      +.++++|++         .+..+.+||..+..  ...+...+... -.++...++    +++++.|+ .++.     + +
T Consensus       254 g~lyv~GG~---------~~~~v~~yd~~t~~--W~~~~~~~~~R~~~s~~~~~d----g~iyv~GG~~~~~~~~~~~e~  318 (656)
T 1k3i_A          254 GQIVVTGGN---------DAKKTSLYDSSSDS--WIPGPDMQVARGYQSSATMSD----GRVFTIGGSWSGGVFEKNGEV  318 (656)
T ss_dssp             SCEEEECSS---------STTCEEEEEGGGTE--EEECCCCSSCCSSCEEEECTT----SCEEEECCCCCSSSCCCCEEE
T ss_pred             CCEEEeCCC---------CCCceEEecCcCCc--eeECCCCCccccccceEEecC----CeEEEEeCcccCCcccccceE
Confidence            378888874         35589999998764  33332222221 234556677    78888888 4432     2 6


Q ss_pred             EecCCCcccC------ccEE----EEEEcCCCCeEEEEecCC---------eEEEEEccccceeeeeeeecc-------c
Q 020107           96 RDITGEKISS------SMCL----CLEWNPSATSITVGLSDG---------SVSIVSVVESQLEVLQQWKAH-------E  149 (331)
Q Consensus        96 w~~~~~~~~~------~~v~----~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~-------~  149 (331)
                      ||..+.....      .+..    ...+..++...+.|+.+|         .+..||..+............       .
T Consensus       319 yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~  398 (656)
T 1k3i_A          319 YSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA  398 (656)
T ss_dssp             EETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred             eCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCC
Confidence            7766543211      0000    011223455556665544         467888877653211111100       1


Q ss_pred             ceeEEEeeCCCCCcEEEEEcCCC-----------eEEEEEccCCCceeee--ecccCCCcceEEEEEecCCCCEEEEEec
Q 020107          150 FELWATSFDVHQPHMVYTGSDDC-----------KFSGWDIRESPFKLAF--QNSKIHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                      ..-.++.+...++++++.|+.++           .+.+||..+.......  .. + ....-.++...| ++++++.|+.
T Consensus       399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m-p-~~R~~~~~~~l~-~g~i~v~GG~  475 (656)
T 1k3i_A          399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-Y-FARTFHTSVVLP-DGSTFITGGQ  475 (656)
T ss_dssp             BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-S-SCCBSCEEEECT-TSCEEEECCB
T ss_pred             CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC-C-CCcccCCeEECC-CCCEEEECCc
Confidence            12234444434678888887543           6778888776533222  11 1 111223445567 8899999986


Q ss_pred             C-----------CeEEEEEecCC
Q 020107          217 D-----------EYLRVWDVRSI  228 (331)
Q Consensus       217 d-----------~~i~iwd~~~~  228 (331)
                      +           ..+.+||..+.
T Consensus       476 ~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          476 RRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             SBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             ccCcCcCCCCcccceEEEcCCCC
Confidence            5           46899998763

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.99  E-value=5e-05  Score=68.92  Aligned_cols=233  Identities=8%  Similarity=-0.050  Sum_probs=122.8

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc-CCccE-EEecCC----Ccc---c---CccEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD-ADGGL-LRDITG----EKI---S---SSMCLC  110 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i-iw~~~~----~~~---~---~~~v~~  110 (331)
                      .+.|+..++....  +..+.. ....+..|+|.+.    ...|+.+. ..+.| .+++.+    ...   .   ......
T Consensus       385 ~~~I~~id~~~~~--~~~~~~-~~~~p~gla~d~~----~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g  457 (699)
T 1n7d_A          385 RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVA----SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  457 (699)
T ss_dssp             TTC-CEECTTSCC--EECCSC-CCTTCCCCEEETT----TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred             ccceEEEeCCCCc--ceeeec-cCcceEEEccccc----cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence            5577788877653  222212 2345678999987    55665554 44555 555543    111   1   122456


Q ss_pred             EEEcCCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-CeEEEEEccCCCceeee
Q 020107          111 LEWNPSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-CKFSGWDIRESPFKLAF  188 (331)
Q Consensus       111 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~  188 (331)
                      |++.+.+..|+.+ ...+.|.++++......  ..+.........++++|..+.++++-... +.|..+++.... ...+
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~--~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l  534 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL  534 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSSSCCEE--EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEE
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecCCCceE--EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEE
Confidence            7887655555554 45788999998754321  11222223467888988555555544333 778888776433 2222


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee--ecCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV--CLGGGVWRIKHHPFIPGLVLAACMHNGFA  266 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  266 (331)
                      ..  ..-...+.|+++|..+.++++-...+.|..+|+.....  ..+..  ........|++..+  .++++....+.|.
T Consensus       535 ~~--~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~  608 (699)
T 1n7d_A          535 VT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIF  608 (699)
T ss_dssp             SC--SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEE
T ss_pred             Ee--CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEE
Confidence            11  02345678999984455666666778899999875321  22111  11122345555443  5555554455544


Q ss_pred             EEEEcCcccceeEEeecCCcceeeeee
Q 020107          267 VVKVGGEKAEVLETYAKHGSLAYGADW  293 (331)
Q Consensus       267 ~~~~~~~~~~~~~~~~~h~~~v~~~~~  293 (331)
                      .++  ...++.+..+.......+++++
T Consensus       609 ~~d--~~~G~~~~~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          609 SAN--RLTGSDVNLLAENLLSPEDMVL  633 (699)
T ss_dssp             EEE--TTTEEEEECCCTTCSSCCCCCB
T ss_pred             EEE--ccCCCceEEeecCCCCCcEEEE
Confidence            443  3224544444332223344433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.97  E-value=0.0086  Score=53.60  Aligned_cols=211  Identities=6%  Similarity=-0.067  Sum_probs=124.4

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE-EEcCCccE-EEecCCCcc------cCccEEEEEEc
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA-QADADGGL-LRDITGEKI------SSSMCLCLEWN  114 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~  114 (331)
                      .+.|+..+++... ....+....-..+.+|+|.+.    +..|. +-..++.| .+++.....      .......+++.
T Consensus        14 ~~~I~~i~l~~~~-~~~~~~~~~~~~~~~l~~d~~----~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD   88 (628)
T 4a0p_A           14 RADIRRISLETNN-NNVAIPLTGVKEASALDFDVT----DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVD   88 (628)
T ss_dssp             TTEEEEEESSCTT-CEEECCCCSCSCEEEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEE
T ss_pred             CCcEEEEECCCCC-cceEEEcCCCCceEEEEEECC----CCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEE
Confidence            7889999998754 112221122346889999997    44554 44555666 555544321      11245678888


Q ss_pred             CCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEE-cCCCeEEEEEccCCCceeeeeccc
Q 020107          115 PSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTG-SDDCKFSGWDIRESPFKLAFQNSK  192 (331)
Q Consensus       115 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~  192 (331)
                      +.+..|+.+. ..+.|.+.+++......+  +...-.....+++.|..+.++.+- +..+.|...++......... .  
T Consensus        89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~--  163 (628)
T 4a0p_A           89 WLGKNLYWADTGTNRIEVSKLDGQHRQVL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-P--  163 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSTTCEEE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-C--
T ss_pred             eCCCEEEEEECCCCEEEEEecCCCcEEEE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-C--
Confidence            7666665554 478899999875432112  212334568999998555555554 23578888888755433222 2  


Q ss_pred             CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107          193 IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK  269 (331)
Q Consensus       193 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (331)
                       .-.....|++++..+.+.++-...+.|..+|+.....  .. +.........+++..+  .++++-...+.|..++
T Consensus       164 -~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v-~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          164 -NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EV-IADDLPHPFGLTQYQD--YIYWTDWSRRSIERAN  234 (628)
T ss_dssp             -SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EE-EEECCSCEEEEEEETT--EEEEEETTTTEEEEEE
T ss_pred             -CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EE-eeccCCCceEEEEECC--EEEEecCCCCEEEEEE
Confidence             3456789999993344444445678899999976433  22 2333445567777653  4444443445533333

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.97  E-value=0.0031  Score=54.28  Aligned_cols=161  Identities=8%  Similarity=0.020  Sum_probs=93.0

Q ss_pred             cEEEEEEcC-CCCeEEEEec-CCeEEEEEccccceeeeeeeec-ccceeEEEee-------CCCCCcEEEEEcCCC----
Q 020107          107 MCLCLEWNP-SATSITVGLS-DGSVSIVSVVESQLEVLQQWKA-HEFELWATSF-------DVHQPHMVYTGSDDC----  172 (331)
Q Consensus       107 ~v~~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~~l~~~~~dg----  172 (331)
                      ....|+|+| +...|+++.. .+.|++.|++++....+..... .......++|       ++ ++..|+.+...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence            356899998 3555555554 5779999998766533322211 1235789999       87 666444444332    


Q ss_pred             ---eEEEEEccC-CCce-----eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec-------CCCC--C---
Q 020107          173 ---KFSGWDIRE-SPFK-----LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR-------SISK--P---  231 (331)
Q Consensus       173 ---~i~i~d~~~-~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~-------~~~~--~---  231 (331)
                         .|.+++... +...     ..+..    -.....++++|.++.++++-..++.|..+|+.       +...  +   
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             cCceEEEEecCCCCceeecccceeecc----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence               266666333 1221     12221    12345678899556666677788899999998       4322  0   


Q ss_pred             -----ceeee-eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          232 -----VNETS-VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       232 -----~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                           ...+. .+.......|+|+|++..++++-.....|+.++...
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence                 11211 222345689999999733455555556655555543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.94  E-value=0.0066  Score=54.35  Aligned_cols=190  Identities=11%  Similarity=-0.064  Sum_probs=115.9

Q ss_pred             eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcce
Q 020107          119 SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV  198 (331)
Q Consensus       119 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  198 (331)
                      +|+.+ ....|+..+++.........+. .-..+..++|++.++.++++-..++.|..+++........+..   .....
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~---g~~~P   82 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF---GLDYP   82 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSCC
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC---CCCCc
Confidence            44444 5578999999865432222222 2345779999986666667767789999999876543333332   22456


Q ss_pred             EEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccccee
Q 020107          199 CCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVL  278 (331)
Q Consensus       199 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (331)
                      ..|++.+..+++.++-...+.|.+.++....  ...+....-.....|++.|.. +.++.+.....-+|+..... +...
T Consensus        83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--~~~l~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~~~d-G~~~  158 (628)
T 4a0p_A           83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--RQVLVWKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRAAMD-GSER  158 (628)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSTT--CEEEECSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEEETT-SCSC
T ss_pred             ceEEEEeCCCEEEEEECCCCEEEEEecCCCc--EEEEEeCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEEeCC-CCce
Confidence            7888887456666666677899999987532  222122334567899999965 55555542212235444333 2323


Q ss_pred             EEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          279 ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       279 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ..+...-....++++.+++.        ++.++=. ..+.|...+++.
T Consensus       159 ~~l~~~~~~P~GlalD~~~~--------~LY~aD~-~~~~I~~~d~dG  197 (628)
T 4a0p_A          159 TTLVPNVGRANGLTIDYAKR--------RLYWTDL-DTNLIESSNMLG  197 (628)
T ss_dssp             EEEECSCSSEEEEEEETTTT--------EEEEEET-TTTEEEEEETTS
T ss_pred             EEEECCCCCcceEEEccccC--------EEEEEEC-CCCEEEEEcCCC
Confidence            33333345677899998763        4445544 678888888764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.92  E-value=0.002  Score=52.00  Aligned_cols=162  Identities=7%  Similarity=-0.018  Sum_probs=102.4

Q ss_pred             ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC------CCcceEEEEE---ecCCCCEEEEEec--
Q 020107          148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI------HKMGVCCIAS---IPSDSNTLLTGSY--  216 (331)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~---~~~~~~~l~~~~~--  216 (331)
                      ...-..+++|++.++.++++.-..+.|..||...+..... .. +.      ....+..|.|   .| ++.++++...  
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~-~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~   87 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI-DGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAK   87 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC-TTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec-CCccccCCCcceeeEEEEeccCC-CCcEEEEEcccc
Confidence            3344567899874555555555899999999975543322 22 11      1224689999   68 6777775432  


Q ss_pred             -----------CCeEEEEEec---CCCCCceeeeee-----------cCCceEEEEECCCCCCeEEEEEec-CcEEEEEE
Q 020107          217 -----------DEYLRVWDVR---SISKPVNETSVC-----------LGGGVWRIKHHPFIPGLVLAACMH-NGFAVVKV  270 (331)
Q Consensus       217 -----------d~~i~iwd~~---~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~  270 (331)
                                 +..|..||+.   +++.....-+..           -......++..+++ +.+++.+.. +.  ||++
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~--I~rV  164 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPA--IARV  164 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCE--EEEE
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCe--EEEE
Confidence                       6789999998   653332221111           11247899999997 566655555 55  7888


Q ss_pred             cCcccceeEEee------cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          271 GGEKAEVLETYA------KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       271 ~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ... ++.+..+.      ......+++++.|++         ++|+... ..|.|..+|+.+
T Consensus       165 ~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg---------~~Liv~~-~~g~L~~fD~~~  215 (334)
T 2p9w_A          165 SAD-GKTVSTFAWESGNGGQRPGYSGITFDPHS---------NKLIAFG-GPRALTAFDVSK  215 (334)
T ss_dssp             CTT-SCCEEEEEECCCCSSSCCSCSEEEEETTT---------TEEEEES-SSSSEEEEECSS
T ss_pred             eCC-CCEEeeeeecCCCcccccCcceEEEeCCC---------CEEEEEc-CCCeEEEEcCCC
Confidence            776 33333321      112236799999998         5777777 599999999763

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.92  E-value=0.0034  Score=50.65  Aligned_cols=153  Identities=14%  Similarity=0.039  Sum_probs=100.4

Q ss_pred             EeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----c--------CccEEEEEE---cCCCCeEEEEe-------
Q 020107           69 IFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----S--------SSMCLCLEW---NPSATSITVGL-------  124 (331)
Q Consensus        69 v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~--------~~~v~~~~~---~~~~~~l~~~~-------  124 (331)
                      -.+++|.+..   +.++++.-..+.| .|+......     .        ...+..|.|   .|+++++++..       
T Consensus        15 PE~~~wd~~~---g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           15 PEDTIYDRTR---QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CSCEEEETTT---TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             CcCccCcCCC---CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            4577888762   4444555478888 777653321     0        124589999   68877766544       


Q ss_pred             ------cCCeEEEEEcc---ccceeeeeeeecc-----------cceeEEEeeCCCCCcEEEEEcCC-CeEEEEEccCCC
Q 020107          125 ------SDGSVSIVSVV---ESQLEVLQQWKAH-----------EFELWATSFDVHQPHMVYTGSDD-CKFSGWDIRESP  183 (331)
Q Consensus       125 ------~dg~i~i~d~~---~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~  183 (331)
                            .+..|..||+.   +++......+...           ......++..+ +++..++++.. +.|...+.....
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGKT  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSCC
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCE
Confidence                  26789999998   6654333333211           13478999998 78888888888 888777776442


Q ss_pred             ceeeeec-c--cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          184 FKLAFQN-S--KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       184 ~~~~~~~-~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                       ...+.. .  .......+.|+++| +++.|++...++.|..+|++.
T Consensus       171 -~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          171 -VSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             -EEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred             -EeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence             332221 1  11233477999999 888877776699999999985

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.90  E-value=0.006  Score=49.72  Aligned_cols=191  Identities=9%  Similarity=0.106  Sum_probs=112.5

Q ss_pred             CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC---CCc---EEEEEc-C--CCeEEEEEcc--CCCcee
Q 020107          118 TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH---QPH---MVYTGS-D--DCKFSGWDIR--ESPFKL  186 (331)
Q Consensus       118 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~~~~-~--dg~i~i~d~~--~~~~~~  186 (331)
                      ..++.....+-+.+||+ +++.  +..+..  ..++.+..-|.   .+.   ++++.. .  +++|++|++.  ++. +.
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~--l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKM--LHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCE--EEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             cEEEEEcCCCCEEEEcC-CCcE--EEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            45565666789999999 5543  444442  34566655541   111   233333 3  5899999774  332 33


Q ss_pred             eeecc--c--CCCcceEEEEE--ecCCCC-EEEEEecCCeEEEEEecCCC------CCceeeeeecCCceEEEEECCCCC
Q 020107          187 AFQNS--K--IHKMGVCCIAS--IPSDSN-TLLTGSYDEYLRVWDVRSIS------KPVNETSVCLGGGVWRIKHHPFIP  253 (331)
Q Consensus       187 ~~~~~--~--~~~~~v~~~~~--~~~~~~-~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~  253 (331)
                      .+...  +  .-...+..+++  +|..+. ++++...+|.+..|++....      +.+.+  ....+.+-.+...+.. 
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~--f~lgsq~EgcvvDd~~-  191 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA--FKMNSQTEGMAADDEY-  191 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE--EECSSCEEEEEEETTT-
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE--ecCCCCcceEEEcCCC-
Confidence            33110  0  01155666777  663443 68888889999999995321      22333  4556788888988876 


Q ss_pred             CeEEEEEecCcEEEEEEcCc-----ccceeEEee-cC-CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          254 GLVLAACMHNGFAVVKVGGE-----KAEVLETYA-KH-GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      +.++++-.+.+  +|.+...     ..+.+..+. ++ ...+.+++.-+...     ..+.+|+|+- .+.++.+||.+
T Consensus       192 g~Lyv~eEd~G--Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~-----g~gyLivSsQ-G~~s~~Vydr~  262 (355)
T 3amr_A          192 GRLYIAEEDEA--IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD-----GKGYLMASSQ-GNSSYAIYDRQ  262 (355)
T ss_dssp             TEEEEEETTTE--EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG-----GCEEEEEEEG-GGTEEEEEESS
T ss_pred             CeEEEecccce--EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC-----CCEEEEEEcC-CCCEEEEEECC
Confidence            77777766666  7777632     134554443 22 23678888753320     0113555654 67899999986

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.89  E-value=0.0021  Score=57.09  Aligned_cols=180  Identities=13%  Similarity=0.071  Sum_probs=99.2

Q ss_pred             EEEcCCCCeEEEEec--------------------C----CeEEEEEccccceeeeeeeeccc--------ceeEEEeeC
Q 020107          111 LEWNPSATSITVGLS--------------------D----GSVSIVSVVESQLEVLQQWKAHE--------FELWATSFD  158 (331)
Q Consensus       111 ~~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~~~~~~~~~~~--------~~v~~~~~~  158 (331)
                      ++++|....++++..                    |    +.|..+|.++++..-......|.        .++. +...
T Consensus       251 ~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~  329 (582)
T 1flg_A          251 ASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYK  329 (582)
T ss_dssp             CEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEE
T ss_pred             ceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eeee
Confidence            456677777777663                    2    68999999998753332222232        1121 1211


Q ss_pred             CCCC---cEEEEEcCCCeEEEEEccCCCceeeeecccC----------CCcc----------------------------
Q 020107          159 VHQP---HMVYTGSDDCKFSGWDIRESPFKLAFQNSKI----------HKMG----------------------------  197 (331)
Q Consensus       159 ~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~----------------------------  197 (331)
                      ..++   ..++.++.+|.++++|.++++.+..+.....          ...+                            
T Consensus       330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~  409 (582)
T 1flg_A          330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFL  409 (582)
T ss_dssp             CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTT
T ss_pred             cCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCc
Confidence            0134   4788899999999999999886554433100          0000                            


Q ss_pred             ----eEEEEEecCCCCEEEEEe---------------------------------cCCeEEEEEecCCCCCceeeeeecC
Q 020107          198 ----VCCIASIPSDSNTLLTGS---------------------------------YDEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       198 ----v~~~~~~~~~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                          -..++++| +..++++..                                 .+|.|.-||+.+++. +-+  ....
T Consensus       410 Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~-~W~--~~~~  485 (582)
T 1flg_A          410 GGKNWNPMAYSQ-DTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKV-VWE--HKEH  485 (582)
T ss_dssp             CSSCSSCCEECT-TTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCE-EEE--EEES
T ss_pred             cccCCCCceECC-CCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCE-EEE--ecCC
Confidence                01345666 333444432                                 257889999988643 333  2222


Q ss_pred             CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce-eeeeecCCCC
Q 020107          241 GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA-YGADWQRGRS  298 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~  298 (331)
                      .++..-.....+ ++++.++.++.++.++...  ++.+.+++...... .-+.+..++.
T Consensus       486 ~~~~~g~~~tag-glvf~g~~dg~l~A~D~~t--G~~lW~~~~~~g~~a~P~~y~~~G~  541 (582)
T 1flg_A          486 LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKS--GKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SCCCSCCEEETT-TEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCCcccceEeCC-CEEEEECCCCcEEEEECCC--CCEEEEecCCCCcccCceEEEECCE
Confidence            222211111122 6777777778777776654  78888777533221 2256666764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.84  E-value=0.012  Score=52.71  Aligned_cols=201  Identities=10%  Similarity=-0.103  Sum_probs=107.1

Q ss_pred             EEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107          108 CLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL  186 (331)
Q Consensus       108 v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  186 (331)
                      ...++|++.+..|+.+.. .+.|..++++.... ....+.........+++.+.+++++++-...+.|.+.++.......
T Consensus        42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~-~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~  120 (619)
T 3s94_A           42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  120 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc-eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEE
Confidence            445666665555554443 56666666654321 1112222224577888887566677777788999999998654332


Q ss_pred             eeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107          187 AFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF  265 (331)
Q Consensus       187 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  265 (331)
                      .+..   .-.....|++.|..+.++.+-- ..+.|...++...  ....+....-.....|++.++...++++-...+.|
T Consensus       121 l~~~---~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~--~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I  195 (619)
T 3s94_A          121 LFWQ---ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI  195 (619)
T ss_dssp             EECS---SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEeC---CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC--ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence            2222   3445788999994454444432 2456766666542  22222223345678999999764555554455564


Q ss_pred             EEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          266 AVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ..+++.....+.+  ..+......++++..+          .++++-. ..+.|...|..++
T Consensus       196 ~~~~~dG~~~~~~--~~~~~~~P~gi~~~~~----------~ly~td~-~~~~V~~~d~~tg  244 (619)
T 3s94_A          196 HKSNLDGTNRQAV--VKGSLPHPFALTLFED----------ILYWTDW-STHSILACNKYTG  244 (619)
T ss_dssp             EEESSSCCEEC-----------CCCEEESSS----------EEEEECT-TTCSEEEEESSSC
T ss_pred             EEecCCCCccEEE--EeCCCCCceEEEEeCC----------EEEEecC-CCCEEEEEECCCC
Confidence            4444433211111  1111222346666554          3555544 6777877777655

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.83  E-value=0.011  Score=50.28  Aligned_cols=151  Identities=9%  Similarity=0.049  Sum_probs=88.0

Q ss_pred             EeEEEEcCC-CCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCC-----eEEEEEccc
Q 020107           69 IFDIKWSPV-GGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDG-----SVSIVSVVE  136 (331)
Q Consensus        69 v~~~~~~~~-~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~  136 (331)
                      ...|+|.|+ +   ...|..+...+.+ .++..+...     .......++++++++ |+++...+     .+...+...
T Consensus       141 P~gvavd~~s~---~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          141 IWRMMFDPNSN---YDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCEEEECTTTT---TCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CceEEEccccC---CCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            568888883 1   3356555554555 566644433     234578999999999 55554422     233333332


Q ss_pred             cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE-EEEe
Q 020107          137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL-LTGS  215 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~  215 (331)
                       .......+. .......++++|.++.++++-..++.|+.+|..++.....+.... .......++++| +++.| ++-.
T Consensus       217 -~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dp-dG~~LYvad~  292 (433)
T 4hw6_A          217 -GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVWHP-TGDWAYIIYN  292 (433)
T ss_dssp             -TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEECT-TSSEEEEEET
T ss_pred             -Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEEeC-CCCEEEEEeC
Confidence             221111121 223456788888566666666678899999998766422222211 122335799999 88744 4445


Q ss_pred             cCCeEEEEEecC
Q 020107          216 YDEYLRVWDVRS  227 (331)
Q Consensus       216 ~d~~i~iwd~~~  227 (331)
                      ..+.|+.+++..
T Consensus       293 ~~~~I~~~~~d~  304 (433)
T 4hw6_A          293 GKHCIYRVDYNR  304 (433)
T ss_dssp             TTTEEEEEEBCT
T ss_pred             CCCEEEEEeCCC
Confidence            678999988763

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.80  E-value=0.0095  Score=48.66  Aligned_cols=224  Identities=6%  Similarity=-0.100  Sum_probs=113.9

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCC--------Cc--ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITG--------EK--ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~--------~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  135 (331)
                      ...+.+|.|.+.    +..++++ ..|.+++....        ..  .....+.++.|.+ + .+++++..|.|.. ..+
T Consensus        35 ~~~~~~v~~~~~----~~~~~~G-~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~D  106 (327)
T 2xbg_A           35 TATILDMSFIDR----HHGWLVG-VNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTD  106 (327)
T ss_dssp             SSCEEEEEESSS----SCEEEEE-TTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESS
T ss_pred             CCcEEEEEECCC----CcEEEEc-CCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECC
Confidence            456899999876    6667754 56666332222        11  1234688899976 3 4444556675543 222


Q ss_pred             cc-ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107          136 ES-QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       136 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      .+ .+..+.....+...+..+.+.+ ++..++.+. ++.|.. ....++.-.....  .....+..+.+.| ++.+++.+
T Consensus       107 gG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~--~~~~~~~~~~~~~-~~~~~~~g  180 (327)
T 2xbg_A          107 GGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMITN-VGAIYR-TKDSGKNWQALVQ--EAIGVMRNLNRSP-SGEYVAVS  180 (327)
T ss_dssp             TTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEET-TCCEEE-ESSTTSSEEEEEC--SCCCCEEEEEECT-TSCEEEEE
T ss_pred             CCCCceECccccCCCCCeEEEEEEC-CCCEEEEeC-CccEEE-EcCCCCCCEEeec--CCCcceEEEEEcC-CCcEEEEE
Confidence            22 2322221111233466777664 455555554 554422 1222332222221  2456789999998 77777766


Q ss_pred             ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-c---CCcceee
Q 020107          215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-K---HGSLAYG  290 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---h~~~v~~  290 (331)
                      ...+..+-.|-.  ..............+..+.+.+++  .+++.+.++.+  +.-....++....+. .   +...+.+
T Consensus       181 ~~G~~~~S~d~g--G~tW~~~~~~~~~~~~~~~~~~~g--~~~~~~~~G~~--~~s~~D~G~tW~~~~~~~~~~~~~~~~  254 (327)
T 2xbg_A          181 SRGSFYSTWEPG--QTAWEPHNRTTSRRLHNMGFTPDG--RLWMIVNGGKI--AFSDPDNSENWGELLSPLRRNSVGFLD  254 (327)
T ss_dssp             TTSSEEEEECTT--CSSCEEEECCSSSCEEEEEECTTS--CEEEEETTTEE--EEEETTEEEEECCCBCTTSSCCSCEEE
T ss_pred             CCCcEEEEeCCC--CCceeECCCCCCCccceeEECCCC--CEEEEeCCceE--EEecCCCCCeeEeccCCcccCCcceEE
Confidence            544433334321  122222223455678899998884  45555555542  222111122222221 1   2235788


Q ss_pred             eeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107          291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLR  320 (331)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~  320 (331)
                      +.+.+++         .+++.+  .++.|.
T Consensus       255 v~~~~~~---------~~~~~g--~~g~i~  273 (327)
T 2xbg_A          255 LAYRTPN---------EVWLAG--GAGALL  273 (327)
T ss_dssp             EEESSSS---------CEEEEE--STTCEE
T ss_pred             EEecCCC---------EEEEEe--CCCeEE
Confidence            8888765         455554  477663

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.79  E-value=0.029  Score=53.84  Aligned_cols=288  Identities=12%  Similarity=0.047  Sum_probs=147.0

Q ss_pred             eeeecCcceeEeeecCCC---CCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCC
Q 020107            5 HCELDGNADAVEFCPQDS---YHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNA   81 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~---~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   81 (331)
                      +..++..+.|++..|..+   ..+++|+|.+         .|++++|++++..+ .+....-+......++.+..-. . 
T Consensus       549 ~~~l~~evscl~i~~~~~~~~~s~~~aVg~~---------~d~tv~I~sL~~l~-~~~~~~L~~~~~p~si~l~~~~-~-  616 (1158)
T 3ei3_A          549 HTEMEHEVACLDITPLGDSNGLSPLCAIGLW---------TDISARILKLPSFE-LLHKEMLGGEIIPRSILMTTFE-S-  616 (1158)
T ss_dssp             EEECSSCEEEEECCCCSSSTTCCSEEEEEET---------TTTEEEEEETTTCC-EEEEEECCSSCCEEEEEEEEET-T-
T ss_pred             ccCCCCceEEEEeecCCCCcccccEEEEEEC---------CCCEEEEEECCCCC-eEEEEECCCCCCCcEEEEEEeC-C-
Confidence            345677888998877542   2369999983         39999999998654 2221111111223333333211 0 


Q ss_pred             CCeEEEEcCCccE---EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc
Q 020107           82 GPFLAQADADGGL---LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF  150 (331)
Q Consensus        82 ~~~l~~~~~dg~i---iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  150 (331)
                      ..+|..|-.||.+   .++..++..        ...++.-..+...+..-+.+..+....+|.-+ +++ ....+.  ..
T Consensus       617 ~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l-~~s~l~--~~  692 (1158)
T 3ei3_A          617 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKL-VFSNVN--LK  692 (1158)
T ss_dssp             EEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSE-EEEEBS--SS
T ss_pred             CcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-Cce-EEeccC--hH
Confidence            4588999999998   444433332        12334333444444433333334444444433 332 122221  11


Q ss_pred             ee-EEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----------
Q 020107          151 EL-WATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----------  217 (331)
Q Consensus       151 ~v-~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------  217 (331)
                      .+ ....|+... ++-++..+ ++.++|..+........... + -...++.++++| ..+.++.+..+           
T Consensus       693 ~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~i-p-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~  768 (1158)
T 3ei3_A          693 EVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTV-P-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTT  768 (1158)
T ss_dssp             CCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEE-E-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEE
T ss_pred             HhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEE-e-CCCCceEEEEcC-CCCEEEEEEEeccccccccccc
Confidence            22 233454311 34455444 45699988865433222221 1 256788899998 55554443311           


Q ss_pred             --------------------------------------CeEEEEEecCCCCCceeeeeecCCceEEEE---ECCCCCCeE
Q 020107          218 --------------------------------------EYLRVWDVRSISKPVNETSVCLGGGVWRIK---HHPFIPGLV  256 (331)
Q Consensus       218 --------------------------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~  256 (331)
                                                            ..|++.|..+. +.+..+.......+.+++   |..+...++
T Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~-~~i~~~~l~~nE~~~sv~~v~~~~~~~~~l  847 (1158)
T 3ei3_A          769 ALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTF-EVLHAHQFLQNEYALSLVSCKLGKDPNTYF  847 (1158)
T ss_dssp             ESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTC-CEEEEEECCTTEEEEEEEEECCTTCCCCEE
T ss_pred             hhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCC-eEEEEEeCCCCcceEEEEEEEEccCCCEEE
Confidence                                                  23556665554 222222223333444544   443333555


Q ss_pred             EEEE----------ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          257 LAAC----------MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       257 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +++.          ..+.+.++++.+..-+.+... ...++|++++--. +          +|+.+-  ...|++|++..
T Consensus       848 vVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~~-g----------~Lla~i--g~~l~vy~l~~  913 (1158)
T 3ei3_A          848 IVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEFN-G----------KLLASI--NSTVRLYEWTT  913 (1158)
T ss_dssp             EEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEET-T----------EEEEEE--TTEEEEEEECT
T ss_pred             EEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeeeC-C----------EEEEEc--CCEEEEEECCC
Confidence            5554          234578888874322333222 3467888876443 3          444443  57999999876


Q ss_pred             c
Q 020107          327 D  327 (331)
Q Consensus       327 ~  327 (331)
                      .
T Consensus       914 ~  914 (1158)
T 3ei3_A          914 E  914 (1158)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.47  E-value=0.028  Score=45.12  Aligned_cols=184  Identities=12%  Similarity=0.103  Sum_probs=94.5

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCc-EeEEEEcCCCCCCCCeEEEEcCCcc-----E-EEe
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG-IFDIKWSPVGGNAGPFLAQADADGG-----L-LRD   97 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~dg~-----i-iw~   97 (331)
                      .+++.|++....    .....+.+||+.+..  ...+....... -.++. ..+    +.+++.|+.++.     + +++
T Consensus        16 ~i~~~GG~~~~~----~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~-~~~----~~l~v~GG~~~~~~~~~~~~~d   84 (301)
T 2vpj_A           16 VLLVVGGFGSQQ----SPIDVVEKYDPKTQE--WSFLPSITRKRRYVASV-SLH----DRIYVIGGYDGRSRLSSVECLD   84 (301)
T ss_dssp             EEEEECCEETTT----EECCCEEEEETTTTE--EEECCCCSSCCBSCEEE-EET----TEEEEECCBCSSCBCCCEEEEE
T ss_pred             EEEEEeCccCCC----cceeEEEEEcCCCCe--EEeCCCCChhhccccEE-EEC----CEEEEEcCCCCCccCceEEEEE
Confidence            567777632111    124578889987764  22221111111 11111 123    557777776543     2 666


Q ss_pred             cCCCc---cc--------CccEEEEEEcCCCCeEEEEecC-----CeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107           98 ITGEK---IS--------SSMCLCLEWNPSATSITVGLSD-----GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        98 ~~~~~---~~--------~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (331)
                      +.+..   -.        ......+.+  +++.++.|+.+     ..+.+||+.+.++..+..+.........+.+   +
T Consensus        85 ~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~  159 (301)
T 2vpj_A           85 YTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---S  159 (301)
T ss_dssp             TTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---T
T ss_pred             CCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---C
Confidence            66554   21        111112222  55666666643     3688999988877655444322222222222   4


Q ss_pred             CcEEEEEcCC-----CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecCC
Q 020107          162 PHMVYTGSDD-----CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRSI  228 (331)
Q Consensus       162 ~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~  228 (331)
                      +.+++.|+.+     ..+.+||+.+.+-...-.. +.....-..+.+   ++.+++.|+.+     ..+.+||+.+.
T Consensus       160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM-ATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC-CcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            5777777754     4688999887653222111 111222222322   56788888764     46888998763

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.44  E-value=0.046  Score=47.06  Aligned_cols=152  Identities=11%  Similarity=0.069  Sum_probs=91.4

Q ss_pred             EeEEEEcCCCCCCCCeEEEEcCC-ccE-EEecCCCcc---------cCccEEEEEE-------cCCCCeEEEEecCC---
Q 020107           69 IFDIKWSPVGGNAGPFLAQADAD-GGL-LRDITGEKI---------SSSMCLCLEW-------NPSATSITVGLSDG---  127 (331)
Q Consensus        69 v~~~~~~~~~~~~~~~l~~~~~d-g~i-iw~~~~~~~---------~~~~v~~~~~-------~~~~~~l~~~~~dg---  127 (331)
                      ...|+|.|.+   ...|.++... +.+ +.++.....         .......++|       +++++.|+++...+   
T Consensus       141 p~~la~dp~~---~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          141 NGRLAFDPLN---KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             EEEEEEETTE---EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCEEEEccCC---CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            4678888831   3345555443 333 444444332         1235789999       99999777776643   


Q ss_pred             ----eEEEEEccc-cceee---eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc-------CCCc--------
Q 020107          128 ----SVSIVSVVE-SQLEV---LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR-------ESPF--------  184 (331)
Q Consensus       128 ----~i~i~d~~~-~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~--------  184 (331)
                          .|.+++... +.+..   ...+.. -.....++++|.++.++++-..++.|..+|+.       ++..        
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence                266665443 23210   012221 12345778898667777788888999999998       5543        


Q ss_pred             ---e-eeeecccCCCcceEEEEEecCCCCEE-EEEecCCeEEEEEecC
Q 020107          185 ---K-LAFQNSKIHKMGVCCIASIPSDSNTL-LTGSYDEYLRVWDVRS  227 (331)
Q Consensus       185 ---~-~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~  227 (331)
                         . ..+..  +.....+.|+|+| +++.| ++-...+.|+.+|...
T Consensus       297 ~g~~~~l~~~--~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          297 PNTFKQLFTI--ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             TTTEEEEEEC--SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred             ccccceeEec--CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCC
Confidence               1 11222  1234568999999 88854 4445678899977754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.40  E-value=0.045  Score=45.89  Aligned_cols=223  Identities=10%  Similarity=0.102  Sum_probs=137.6

Q ss_pred             CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc
Q 020107           24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI  103 (331)
Q Consensus        24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~  103 (331)
                      .+.+|.-.           ...++|||++... +++.. . ....|.--+|-..     +.|+-.+......|++.....
T Consensus        77 ~~iiALra-----------g~~lQiFnle~K~-klks~-~-~~e~VvfWkWis~-----~~l~lVT~taVyHWsi~~~s~  137 (494)
T 1bpo_A           77 SKVIALKA-----------GKTLQIFNIEMKS-KMKAH-T-MTDDVTFWKWISL-----NTVALVTDNAVYHWSMEGESQ  137 (494)
T ss_dssp             SSCEEEEE-----------TTEEEEEETTTTE-EEEEE-E-CSSCCCEEEEEET-----TEEEEECSSEEEEEESSSSCC
T ss_pred             CcEEEEec-----------CCeEEEEchHHhh-hhcce-e-cCCCceEEEecCC-----CeEEEEcCCeeEEecccCCCC
Confidence            36788876           8899999999875 33333 1 2356777777654     277777766666999865322


Q ss_pred             -----------cCccEEEEEEcCCCCeEEEEec-------CCeEEEEEccccceeeeeeeecccceeEEEeeCCC--CCc
Q 020107          104 -----------SSSMCLCLEWNPSATSITVGLS-------DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH--QPH  163 (331)
Q Consensus       104 -----------~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~  163 (331)
                                 ....|.....+++.++++..+-       .|.+.+|..+.+.   ...+.+|......+...-.  ...
T Consensus       138 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~  214 (494)
T 1bpo_A          138 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEEST  214 (494)
T ss_dssp             CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC---EEEECCSEEEEEEEECTTCSSEEE
T ss_pred             chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc---cchheeeeeeeEEEecCCCCCCce
Confidence                       2566777788888888654432       4788999988653   4567788776666655421  123


Q ss_pred             EEEEEcC---CCeEEEEEccCC-Cceeee--------ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107          164 MVYTGSD---DCKFSGWDIRES-PFKLAF--------QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP  231 (331)
Q Consensus       164 ~l~~~~~---dg~i~i~d~~~~-~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  231 (331)
                      +++.+..   .+.++|.++... .....+        -......+-..++..++ .-..++.-+.-|.|++||+.++ .+
T Consensus       215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTg-t~  292 (494)
T 1bpo_A          215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETG-TC  292 (494)
T ss_dssp             EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTC-CE
T ss_pred             EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccc-ee
Confidence            4554444   379999999653 111111        11122355677899998 7788889999999999999996 44


Q ss_pred             ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          232 VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      +.. ..-....|...+.+... +-+++....+.+..+.+.+
T Consensus       293 i~~-nrIs~~~iF~t~~~~~~-~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          293 IYM-NRISGETIFVTAPHEAT-AGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEE-EECCSSCEEEEEEETTT-TEEEEEETTCEEEEEEECT
T ss_pred             eee-ecccCCceEEecccCCC-CcEEEEccCceEEEEEEcc
Confidence            443 13333444444444433 2233333455544444443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.40  E-value=0.02  Score=47.88  Aligned_cols=128  Identities=15%  Similarity=0.200  Sum_probs=85.9

Q ss_pred             CCcEEEEeccCcccceEEeEeee---cCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCC----c-------------
Q 020107           43 NGSISLFNVNAEEKNLELLYRMD---TAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGE----K-------------  102 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~----~-------------  102 (331)
                      ++.||.-++.... ..+.+...+   -..|..+..+|+    |++||..+..+..+-.+...    .             
T Consensus        40 ~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSps----G~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty  114 (452)
T 3pbp_A           40 DNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTS----GDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHY  114 (452)
T ss_dssp             TTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTT----SSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred             CCEEEEEECCCCC-cceEEecCcccccCceeEEEECCC----CCEEEEecCCeEEEEEecCccccCcccccccccceeEE
Confidence            7889988887543 355443322   236888999999    99999998776553333210    0             


Q ss_pred             -c------cCccEEEEEEcCC---CCeEEEEecCCeEEEEEccccceeeeeeee---------cccceeEEEeeCCCCCc
Q 020107          103 -I------SSSMCLCLEWNPS---ATSITVGLSDGSVSIVSVVESQLEVLQQWK---------AHEFELWATSFDVHQPH  163 (331)
Q Consensus       103 -~------~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~  163 (331)
                       .      ...+|..+.|+|-   +..|++-..|+.|++||+......+. .++         .....|.+++|.+ ++-
T Consensus       115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~l  192 (452)
T 3pbp_A          115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGL  192 (452)
T ss_dssp             EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSS
T ss_pred             EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCc
Confidence             0      1467999999995   45799999999999999986322222 221         1225688999997 666


Q ss_pred             EEEE--EcCCCeEEEE
Q 020107          164 MVYT--GSDDCKFSGW  177 (331)
Q Consensus       164 ~l~~--~~~dg~i~i~  177 (331)
                      .|..  .++.|.|+-.
T Consensus       193 TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          193 TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CEEEEECTTSCEEEEE
T ss_pred             EEEEEecCCCCCEEEE
Confidence            5655  4477887543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.36  E-value=0.075  Score=47.52  Aligned_cols=184  Identities=9%  Similarity=-0.052  Sum_probs=107.4

Q ss_pred             CCeEEEEEccccceeeee-eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe
Q 020107          126 DGSVSIVSVVESQLEVLQ-QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI  204 (331)
Q Consensus       126 dg~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  204 (331)
                      .+.|+..++.......+. .+. .-..+.+++|.+.++.++++-...+.|+.+++........+..   .-..+..+++.
T Consensus       325 ~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~---~~~~p~GlAvD  400 (619)
T 3s94_A          325 RTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA---QIAHPDGIAVD  400 (619)
T ss_dssp             SSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSCCCEEEEE
T ss_pred             ccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC---CCCCcCceEEe
Confidence            356677777654321111 111 1234678999885566666666788999999876543333322   23456788888


Q ss_pred             cCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe-ec
Q 020107          205 PSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY-AK  283 (331)
Q Consensus       205 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  283 (331)
                      +..+++..+-+..+.|.+.++....  ...+....-.....|++.|.. +.+..+.....-+++..... +.....+ ..
T Consensus       401 ~~~~~lY~tD~~~~~I~v~~~~G~~--~~~l~~~~l~~P~~iavdp~~-G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~  476 (619)
T 3s94_A          401 WVARNLYWTDTGTDRIEVTRLNGTM--RKILISEDLEEPRAIVLDPMV-GYMYWTDWGEIPKIERAALD-GSDRVVLVNT  476 (619)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCS--CEEEECTTCCSEEEEEEETTT-TEEEEEECSSSCEEEEEETT-SCSCEEEECS
T ss_pred             cccCcEEEEeCCCCcEEEEeCCCCe--EEEEEECCCCCeeeEEEEcCC-CcEEEecCCCCCEEEEEccC-CCccEEEEeC
Confidence            7456666666677899999987632  222222334568899999975 55555543222235555433 2222222 23


Q ss_pred             CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      .-....++++.+...        ++.++=+ ..+.|...+++.
T Consensus       477 ~l~~P~GlalD~~~~--------~LY~aD~-~~~~I~~~~~dG  510 (619)
T 3s94_A          477 SLGWPNGLALDYDEG--------KIYWGDA-KTDKIEVMNTDG  510 (619)
T ss_dssp             SCSCEEEEEEETTTT--------EEEEEET-TTTEEEEEESSS
T ss_pred             CCCCCeeeEEcccCC--------EEEEEEC-CCCEEEEEecCC
Confidence            345667899988663        4444444 567788887754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.32  E-value=0.029  Score=45.03  Aligned_cols=190  Identities=11%  Similarity=0.089  Sum_probs=94.7

Q ss_pred             CCCeEEEEecC-----CeEEEEEccccc---eeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-----CeEEEEEccCC
Q 020107          116 SATSITVGLSD-----GSVSIVSVVESQ---LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-----CKFSGWDIRES  182 (331)
Q Consensus       116 ~~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  182 (331)
                      ++..++.|+.+     ..+.+||+.+.+   +..+..+.........+.+   ++.+++.|+.+     ..+.+||+.+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCC
Confidence            55667777654     468999998877   6555444322222222222   45777777644     36888998876


Q ss_pred             CceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCeE
Q 020107          183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGLV  256 (331)
Q Consensus       183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~  256 (331)
                      +-...-.. +.....-.++.+   ++.+++.|+.+     ..+.+||+.+.  ...... ......-.++....+  .++
T Consensus       139 ~W~~~~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~--~i~  210 (301)
T 2vpj_A          139 QWSMLGDM-QTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALLND--HIY  210 (301)
T ss_dssp             EEEEEEEC-SSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETT--EEE
T ss_pred             eEEECCCC-CCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEECC--EEE
Confidence            53322221 111222222222   56788888765     45888888763  111100 011111112222222  455


Q ss_pred             EEEEec-----CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC-----CeEEEEcCCC
Q 020107          257 LAACMH-----NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD-----RLLRIWMPES  326 (331)
Q Consensus       257 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d-----~~i~iW~~~~  326 (331)
                      +.+|.+     +.+.++++.......+..+.........+.  -++         ++++.|| .+     ..|.+||+++
T Consensus       211 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~---------~i~v~GG-~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          211 VVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRG---------RLYAIAG-YDGNSLLSSIECYDPII  278 (301)
T ss_dssp             EECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETT---------EEEEECC-BCSSSBEEEEEEEETTT
T ss_pred             EEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECC---------EEEEEcC-cCCCcccccEEEEcCCC
Confidence            555442     345566665543333322221111111122  244         6778887 55     4678888877


Q ss_pred             cc
Q 020107          327 DC  328 (331)
Q Consensus       327 ~~  328 (331)
                      ..
T Consensus       279 ~~  280 (301)
T 2vpj_A          279 DS  280 (301)
T ss_dssp             TE
T ss_pred             Ce
Confidence            54

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.26  E-value=0.051  Score=43.68  Aligned_cols=179  Identities=7%  Similarity=-0.062  Sum_probs=92.1

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee--cCcEeEEEEcCCCCCCCCeEEEEcCCccE-----EEe
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD--TAGIFDIKWSPVGGNAGPFLAQADADGGL-----LRD   97 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-----iw~   97 (331)
                      .+++.|++.        ....+.+||..+..  ...+....  ...-..+.+  +    +.+++.|+.+...     .++
T Consensus        13 ~l~~~GG~~--------~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~----~~lyv~GG~~~~~~~~~~~~d   76 (306)
T 3ii7_A           13 YRIALFGGS--------QPQSCRYFNPKDYS--WTDIRCPFEKRRDAACVFW--D----NVVYILGGSQLFPIKRMDCYN   76 (306)
T ss_dssp             EEEEEECCS--------STTSEEEEETTTTE--EEECCCCSCCCBSCEEEEE--T----TEEEEECCBSSSBCCEEEEEE
T ss_pred             eEEEEeCCC--------CCceEEEecCCCCC--EecCCCCCcccceeEEEEE--C----CEEEEEeCCCCCCcceEEEEe
Confidence            577777632        25678899988765  22221111  111122222  3    5577777766222     555


Q ss_pred             cCCCccc--------CccEEEEEEcCCCCeEEEEecC------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCc
Q 020107           98 ITGEKIS--------SSMCLCLEWNPSATSITVGLSD------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH  163 (331)
Q Consensus        98 ~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (331)
                      ..+..-.        ......+.+  +++.++.|+.+      ..+.+||+.+.++..+..+.........+.+   ++.
T Consensus        77 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~  151 (306)
T 3ii7_A           77 VVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA---NGL  151 (306)
T ss_dssp             TTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTE
T ss_pred             CCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE---CCE
Confidence            5543321        111112222  56666777654      4688999998876554443322222222222   456


Q ss_pred             EEEEEcC---------CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecCC
Q 020107          164 MVYTGSD---------DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRSI  228 (331)
Q Consensus       164 ~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~  228 (331)
                      +++.|+.         -..+.+||+.+.+-...-.. +.....-..+.+   ++.+++.|+.+     ..+.+||+.+.
T Consensus       152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM-IEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc-cchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            7777763         34588999987643222111 111122222222   56777887754     35788888763

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.21  E-value=0.068  Score=44.12  Aligned_cols=147  Identities=12%  Similarity=-0.016  Sum_probs=77.8

Q ss_pred             cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee---cccceeEEEeeCCC---CCcEEEEEcC---C----Ce
Q 020107          107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK---AHEFELWATSFDVH---QPHMVYTGSD---D----CK  173 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~~l~~~~~---d----g~  173 (331)
                      ....++|.|+++ |+++..+|.|++++. +++ ..+..+.   ........++++|+   ++.++++-+.   +    ..
T Consensus        30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           30 VPWSIAPLGGGR-YLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             CEEEEEEEETTE-EEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            456888888887 555566688888873 343 3333221   12345789999984   3444444332   3    56


Q ss_pred             EEEEEccCCC-----ceeeeeccc-CCCcceEEEEEecCCCCEEEEEec-------------CCeEEEEEecCCCC----
Q 020107          174 FSGWDIRESP-----FKLAFQNSK-IHKMGVCCIASIPSDSNTLLTGSY-------------DEYLRVWDVRSISK----  230 (331)
Q Consensus       174 i~i~d~~~~~-----~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~~----  230 (331)
                      |..++.....     ....+...+ ........|.|.| ++.+.++.+.             .|.|.-++... +.    
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~n  184 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADN  184 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCC
Confidence            7777766431     111122111 1112346799999 8877666442             24555555432 10    


Q ss_pred             ---CceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107          231 ---PVNETSVCLGGGVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       231 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  259 (331)
                         .......++ .....++|+|+...++++-
T Consensus       185 pf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          185 PFPNSPIWSYGH-RNPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             SSTTCCEEEECC-SCCCEEEECTTTCCEEEEE
T ss_pred             CCCCCcEEEEcc-CCcceEEEeCCCCCEEEEe
Confidence               011111233 2356899999432444443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.20  E-value=0.07  Score=44.01  Aligned_cols=218  Identities=12%  Similarity=-0.004  Sum_probs=110.2

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc----------ccCccEEEEEEcCC---CCeEEEEecC------
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK----------ISSSMCLCLEWNPS---ATSITVGLSD------  126 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~----------~~~~~v~~~~~~~~---~~~l~~~~~d------  126 (331)
                      .....|+|.|+    ++++++ ...|.| +++ ....          ........|+|+|+   +..|+++...      
T Consensus        31 ~~P~~ia~~pd----G~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           31 EVPWALAFLPD----GGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             SCEEEEEECTT----SCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCceEEEEcCC----CeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            34679999999    775555 455777 444 1110          01345789999998   6666665542      


Q ss_pred             CeEEEEEccccce---eee-eeee---cccceeEEEeeCCCCCcEEEEEcC-------------CCeEEEEEccCC----
Q 020107          127 GSVSIVSVVESQL---EVL-QQWK---AHEFELWATSFDVHQPHMVYTGSD-------------DCKFSGWDIRES----  182 (331)
Q Consensus       127 g~i~i~d~~~~~~---~~~-~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~----  182 (331)
                      +.|..++...++.   +.+ ..+.   ........++|.| ++.++++.+.             .|.|.-++....    
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~  183 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG  183 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence            6788888764321   111 1122   1112246899998 6676666432             145665665431    


Q ss_pred             --------CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeE------EEEEecCCC-----------------CC
Q 020107          183 --------PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYL------RVWDVRSIS-----------------KP  231 (331)
Q Consensus       183 --------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i------~iwd~~~~~-----------------~~  231 (331)
                              .....+..  ++ .....++|+|.++.++++-.....+      .+.-+..+.                 .|
T Consensus       184 npf~~~~~~~~~i~a~--G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p  260 (352)
T 2ism_A          184 NPFLGRRGARPEVYSL--GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP  260 (352)
T ss_dssp             CTTTTCTTSCTTEEEE--CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred             CcccCCCCCCccEEEE--cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence                    01111111  12 2356788998445555443322221      122222221                 12


Q ss_pred             ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc----eeEEeecCCcceeeeeecCCCC
Q 020107          232 VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE----VLETYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~  298 (331)
                      +..  ..+......++|. ++ .++++.-..+.+..+++......    ....+..-...+.++++.|++.
T Consensus       261 ~~~--~~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~  327 (352)
T 2ism_A          261 LYF--WPQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA  327 (352)
T ss_dssp             SEE--CTTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC
T ss_pred             eEe--cCCCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc
Confidence            222  1223345677773 32 44444434455555555433110    0122222235788999999984

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.19  E-value=0.072  Score=43.94  Aligned_cols=105  Identities=12%  Similarity=0.087  Sum_probs=61.5

Q ss_pred             cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee---cccceeEEEeeCCC---CCcEEEEEcCC-----CeEE
Q 020107          107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK---AHEFELWATSFDVH---QPHMVYTGSDD-----CKFS  175 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~~l~~~~~d-----g~i~  175 (331)
                      ....++|.|+++ ++++...|.|.+++  .++...+..+.   ........++++|+   ++.++++-...     ..|.
T Consensus        32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            456899999998 55556679999998  34333333221   22346789999984   24444444332     6788


Q ss_pred             EEEccCCCc---eeeeeccc---CCCcceEEEEEecCCCCEEEEEe
Q 020107          176 GWDIRESPF---KLAFQNSK---IHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       176 i~d~~~~~~---~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      .++......   ...+...+   ........++|.| ++.+.++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence            888764321   11222111   1112346899999 887666643

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.08  E-value=0.1  Score=43.72  Aligned_cols=183  Identities=13%  Similarity=0.072  Sum_probs=91.7

Q ss_pred             ccEEEEEEcCC-CCeEEEEecCCeEEEEEccccceeeeee-eec-c--------cceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107          106 SMCLCLEWNPS-ATSITVGLSDGSVSIVSVVESQLEVLQQ-WKA-H--------EFELWATSFDVHQPHMVYTGSDDCKF  174 (331)
Q Consensus       106 ~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~--------~~~v~~~~~~~~~~~~l~~~~~dg~i  174 (331)
                      ..+.+|.++|. ...|.++..++.|...+-....+..+.. ... +        ...+.+++++|.++..+..+...+ |
T Consensus       177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l  255 (394)
T 3b7f_A          177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I  255 (394)
T ss_dssp             CEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred             CceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence            35788999884 4556667665655444322223322211 000 0        134889999986566777776544 4


Q ss_pred             EEEEccCCCceeeeecccCCC---cceEEEEEecCCCCEEEEEec-----------CCeEEEEEecCCCCCceeeeeecC
Q 020107          175 SGWDIRESPFKLAFQNSKIHK---MGVCCIASIPSDSNTLLTGSY-----------DEYLRVWDVRSISKPVNETSVCLG  240 (331)
Q Consensus       175 ~i~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~  240 (331)
                      ...+-. ++.-..+.. ....   ..+.++.++|.+...|..+..           ++...+|......+..........
T Consensus       256 ~~s~D~-G~tW~~~~~-~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp  333 (394)
T 3b7f_A          256 YRMDRR-EGVWKRIGD-AMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP  333 (394)
T ss_dssp             EEEETT-TTEEECGGG-GSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred             EEeCCC-CCcceECCC-CCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence            433322 221111111 0011   346778888744555555532           334566666554343333111111


Q ss_pred             C-------ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107          241 G-------GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQ  294 (331)
Q Consensus       241 ~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  294 (331)
                      .       ....++++|..+..+++++..+.  +|.-.+. ++.-..+..+-..+.++.|.
T Consensus       334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~--l~~S~D~-G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGE--IWASADE-GEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             CSSCCCCCCTBSEEECCSSSCCEEEECTTSC--EEEESST-TSBCEEEECSCSCEEEEEEE
T ss_pred             CccccceEEEEEEEECCCCCCEEEEEeCCCe--EEEECCC-CCCceEcccCCCCeeEEEEe
Confidence            1       01357888865455555544555  6655554 44444454444557777664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.98  E-value=0.24  Score=48.14  Aligned_cols=225  Identities=11%  Similarity=0.123  Sum_probs=130.6

Q ss_pred             CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCC
Q 020107           22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGE  101 (331)
Q Consensus        22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~  101 (331)
                      |..+.+|.-.           ...++|||++... +++.. . ....|.--+|-..     +.|+..+......|++...
T Consensus        75 P~~~iiALra-----------g~~lQiFnl~~k~-klks~-~-~~e~VvfWkWis~-----~~l~lVT~~aVyHW~~~~~  135 (1630)
T 1xi4_A           75 PASKVIALKA-----------GKTLQIFNIEMKS-KMKAH-T-MTDDVTFWKWISL-----NTVALVTDNAVYHWSMEGE  135 (1630)
T ss_pred             CCcceEEEec-----------CCeEEEeehHHhh-hhccc-c-cCCCceEEEecCC-----CeeEEEcCCeEEEeccCCC
Confidence            3336777765           7899999998875 33332 1 2345777777655     2666666666669999653


Q ss_pred             cc-----------cCccEEEEEEcCCCCeEEEEe-------cCCeEEEEEccccceeeeeeeecccceeEEEeeC--CCC
Q 020107          102 KI-----------SSSMCLCLEWNPSATSITVGL-------SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD--VHQ  161 (331)
Q Consensus       102 ~~-----------~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  161 (331)
                      ..           ....|..-.-+++.++++..+       -.|.+.+|..+.+.   ...+.+|......+...  +..
T Consensus       136 s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~---sQ~iegha~~F~~~~~~~~~~~  212 (1630)
T 1xi4_A          136 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEE  212 (1630)
T ss_pred             CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc---chhhhHhHhhhheeccCCCCCC
Confidence            22           255677777788888865433       25889999987643   34456676555444443  212


Q ss_pred             CcEEEEEcC---CCeEEEEEccCC-Cceeeee--------cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107          162 PHMVYTGSD---DCKFSGWDIRES-PFKLAFQ--------NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       162 ~~~l~~~~~---dg~i~i~d~~~~-~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      ..+++.+..   .+.++|-++... .....++        ......+-..++..++ .-..+..-+.-|.|.+||+.++ 
T Consensus       213 ~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~-  290 (1630)
T 1xi4_A          213 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETG-  290 (1630)
T ss_pred             ceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecccc-
Confidence            234433332   378999998653 1111111        1111244456788888 7778888889999999999996 


Q ss_pred             CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      .++.. ..-...+|...+.+....+. ++....|.+..+.+..
T Consensus       291 ~~i~~-~ris~~~iF~~~~~~~~~g~-~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          291 TCIYM-NRISGETIFVTAPHEATAGI-IGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             hhhhh-ccccCCceEEeccCCCCCce-EEEcCCceEEEEEEcc
Confidence            33333 12333344444444333233 3333444433344433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.95  E-value=0.065  Score=43.03  Aligned_cols=190  Identities=10%  Similarity=0.051  Sum_probs=94.8

Q ss_pred             CCCeEEEEecC----CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEEccCCCce
Q 020107          116 SATSITVGLSD----GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWDIRESPFK  185 (331)
Q Consensus       116 ~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~  185 (331)
                      ++..++.|+.+    ..+.+||+.++++..+..+.........+.+   ++.+++.|+.+      ..+.+||+.+.+-.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence            55666777654    6788999998877555444322222222222   45777777755      46889998876532


Q ss_pred             eeeecccCCCcceEEEEEecCCCCEEEEEec---------CCeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCe
Q 020107          186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSY---------DEYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGL  255 (331)
Q Consensus       186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~  255 (331)
                      ..-.. +.....-..+.+   ++.+++.|+.         -..+.+||+.+.  ...... ......-..++...+  .+
T Consensus       132 ~~~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~--~i  203 (306)
T 3ii7_A          132 TKPSM-LTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFVKD--KI  203 (306)
T ss_dssp             EECCC-SSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETT--EE
T ss_pred             eCCCC-cCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEECC--EE
Confidence            22111 111122222222   5677777764         344788888763  122100 011111112222222  55


Q ss_pred             EEEEEec-----CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC-----CeEEEEcCC
Q 020107          256 VLAACMH-----NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD-----RLLRIWMPE  325 (331)
Q Consensus       256 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d-----~~i~iW~~~  325 (331)
                      ++.+|.+     +.+.++++.......+..+.........+.+  ++         .+++.|| .+     ..+.+||++
T Consensus       204 ~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~---------~i~v~GG-~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          204 FAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS---------IVYVLAG-FQGVGRLGHILEYNTE  271 (306)
T ss_dssp             EEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT---------EEEEEEC-BCSSSBCCEEEEEETT
T ss_pred             EEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC---------EEEEEeC-cCCCeeeeeEEEEcCC
Confidence            5555543     3445566554333333222211111122222  33         6778887 54     468889887


Q ss_pred             Ccc
Q 020107          326 SDC  328 (331)
Q Consensus       326 ~~~  328 (331)
                      +..
T Consensus       272 ~~~  274 (306)
T 3ii7_A          272 TDK  274 (306)
T ss_dssp             TTE
T ss_pred             CCe
Confidence            764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.94  E-value=0.035  Score=44.54  Aligned_cols=181  Identities=11%  Similarity=0.086  Sum_probs=91.3

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC--cEeEEEEcCCCCCCCCeEEEEcCCccE------EE
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA--GIFDIKWSPVGGNAGPFLAQADADGGL------LR   96 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~l~~~~~dg~i------iw   96 (331)
                      .+++.|++....     .-..+.+||..+..  ...+......  .-..+.+  +    +.+++.|+.++.-      ++
T Consensus        63 ~lyv~GG~~~~~-----~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~----~~iyv~GG~~~~~~~~~~~~~  129 (302)
T 2xn4_A           63 LVFAVGGFNGSL-----RVRTVDSYDPVKDQ--WTSVANMRDRRSTLGAAVL--N----GLLYAVGGFDGSTGLSSVEAY  129 (302)
T ss_dssp             EEEEESCBCSSS-----BCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--T----TEEEEEEEECSSCEEEEEEEE
T ss_pred             EEEEEeCcCCCc-----cccceEEECCCCCc--eeeCCCCCccccceEEEEE--C----CEEEEEcCCCCCccCceEEEE
Confidence            566666632111     23568888887764  3222111111  1112222  3    5577777765432      55


Q ss_pred             ecCCCccc--------CccEEEEEEcCCCCeEEEEecC-------CeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107           97 DITGEKIS--------SSMCLCLEWNPSATSITVGLSD-------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        97 ~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (331)
                      ++.+..-.        ......+.+  +++.++.|+.+       ..+.+||+.+.++..+..+.........+.+   +
T Consensus       130 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~  204 (302)
T 2xn4_A          130 NIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---N  204 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---T
T ss_pred             eCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---C
Confidence            55443221        111111222  55666666542       4588999998877555444322222222222   4


Q ss_pred             CcEEEEEcCC-----CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC-----eEEEEEecC
Q 020107          162 PHMVYTGSDD-----CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-----YLRVWDVRS  227 (331)
Q Consensus       162 ~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~  227 (331)
                      +.+++.|+.+     ..+.+||+.+.+-...-.. +.....-..+.+   ++.+++.|+.++     .+.+||+.+
T Consensus       205 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          205 NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM-NMCRRNAGVCAV---NGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC-CCccccCeEEEE---CCEEEEECCcCCCcccccEEEEcCCC
Confidence            5777887754     4688999987653222111 111111222222   567888887654     477888775

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.87  E-value=0.1  Score=41.72  Aligned_cols=95  Identities=13%  Similarity=0.145  Sum_probs=50.1

Q ss_pred             CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCCceeeeecccCCCcceEEE
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESPFKLAFQNSKIHKMGVCCI  201 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  201 (331)
                      ..+.+||+.+.++..+..+.........+.+   ++.+++.|+.++     .+.+||+.+.+-...-.. +.......++
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~  152 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM-NTRRSSVGVG  152 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC-SSCCBSCEEE
T ss_pred             cceEEECCCCCceeeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC-CCcccCceEE
Confidence            3577888887766554443322222222222   457777777553     577888887653222111 1112222222


Q ss_pred             EEecCCCCEEEEEecC-------CeEEEEEecCC
Q 020107          202 ASIPSDSNTLLTGSYD-------EYLRVWDVRSI  228 (331)
Q Consensus       202 ~~~~~~~~~l~~~~~d-------~~i~iwd~~~~  228 (331)
                      .+   ++.+++.|+.+       ..+.+||+.+.
T Consensus       153 ~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~  183 (302)
T 2xn4_A          153 VV---GGLLYAVGGYDVASRQCLSTVECYNATTN  183 (302)
T ss_dssp             EE---TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred             EE---CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence            22   56777777653       34788888763

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.84  E-value=0.38  Score=46.37  Aligned_cols=194  Identities=8%  Similarity=0.010  Sum_probs=110.4

Q ss_pred             CCeEEEEe----------cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107          117 ATSITVGL----------SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL  186 (331)
Q Consensus       117 ~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  186 (331)
                      ..++++|+          ..|.|.+|++..++++.+.... ..+++++++--  ++.++++.  ..+|++|++...+...
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~-v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~L~  918 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE-VKGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKELR  918 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE-ESSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSCEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE-cCCcCEEEeee--CCEEEEEc--CCEEEEEECCCCceEE
Confidence            46788886          3588999999866655554443 46678888743  44444433  5889999998665333


Q ss_pred             eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107          187 AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGLVLAACMHNGF  265 (331)
Q Consensus       187 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  265 (331)
                       ... .... .|..+.... .+++++.|..-..|.++..+.....+..+. ......++++.+-.+  ..++++-..+.+
T Consensus       919 -~~~-~~~~-~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~--~t~l~aD~~gNl  992 (1158)
T 3ei3_A          919 -TEC-NHYN-NIMALYLKT-KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD--DNFLGAENAFNL  992 (1158)
T ss_dssp             -EEE-EECC-CSCEEEEEE-ETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET--TEEEEEETTSEE
T ss_pred             -EEe-eccc-cEEEEEEec-cCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc--CcEEEEcCCCcE
Confidence             111 0011 133333323 467899998888888877765433333311 234567888888766  677777788888


Q ss_pred             EEEEEcCcc-----ccee-EEeecC-Ccceeeee---ecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107          266 AVVKVGGEK-----AEVL-ETYAKH-GSLAYGAD---WQRGRSSLEGKRKNSLVATCSFYDRLLRIW  322 (331)
Q Consensus       266 ~~~~~~~~~-----~~~~-~~~~~h-~~~v~~~~---~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW  322 (331)
                      .+++.....     ++.+ ..-.-| ...|+++.   +.+.+......+....++-++ .+|.|-+.
T Consensus       993 ~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T-~~GsIg~l 1058 (1158)
T 3ei3_A          993 FVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGT-VNGMIGLV 1058 (1158)
T ss_dssp             EEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEE-TTSCEEEE
T ss_pred             EEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEe-cCCEEEEE
Confidence            888776531     1222 221222 34566654   333220000001113466666 79988765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.82  E-value=0.16  Score=41.77  Aligned_cols=172  Identities=11%  Similarity=0.038  Sum_probs=93.8

Q ss_pred             cCCeEEEEEcccc--ceeeeeeeec-----ccceeEEEeeCCC-CC-cEEEEE-cC--CCeEEEEEccCCCceee-eecc
Q 020107          125 SDGSVSIVSVVES--QLEVLQQWKA-----HEFELWATSFDVH-QP-HMVYTG-SD--DCKFSGWDIRESPFKLA-FQNS  191 (331)
Q Consensus       125 ~dg~i~i~d~~~~--~~~~~~~~~~-----~~~~v~~~~~~~~-~~-~~l~~~-~~--dg~i~i~d~~~~~~~~~-~~~~  191 (331)
                      .+|.|.++|+++.  +.+.+ .+.+     .......+.+.++ ++ .+|+.+ ..  +..+.+|++........ +...
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence            5789999998742  32222 2222     2234556665442 22 234443 33  56888888876433222 2111


Q ss_pred             c-CCCcceEEEEEecCCCCEEEEEec-----------------CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC
Q 020107          192 K-IHKMGVCCIASIPSDSNTLLTGSY-----------------DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP  253 (331)
Q Consensus       192 ~-~~~~~v~~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  253 (331)
                      . ..-...+.+.+.+ ++.+.++...                 .|.|..+|.  . + +.. ....-...+.++|+|+++
T Consensus       160 ~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~-~-~~~-~~~~l~~pNGia~spDg~  233 (355)
T 3sre_A          160 RHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N-D-VRV-VAEGFDFANGINISPDGK  233 (355)
T ss_dssp             CCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T-C-CEE-EEEEESSEEEEEECTTSS
T ss_pred             ccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C-e-EEE-eecCCcccCcceECCCCC
Confidence            1 1234578999999 8877776541                 234444443  2 2 222 223334578899999985


Q ss_pred             CeEEEEEecCcEEEEEEcCcc-cceeEEeecCCcceeeeeecC-CCCcccccccCcEEEEee
Q 020107          254 GLVLAACMHNGFAVVKVGGEK-AEVLETYAKHGSLAYGADWQR-GRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~l~s~~  313 (331)
                      .++++-+....+..+++.... ......+ ...+..-.+++.+ ++         ++.+++.
T Consensus       234 ~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G---------~lwva~~  285 (355)
T 3sre_A          234 YVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG---------DLWVGCH  285 (355)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC---------CEEEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC---------cEEEEec
Confidence            566666667888888886431 1112233 2235566778877 46         5666554

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=96.77  E-value=0.19  Score=42.02  Aligned_cols=218  Identities=12%  Similarity=0.045  Sum_probs=105.8

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe-eecCcEeEEEEcCCCCCCCCeEEEEcCCc----cE-----
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR-MDTAGIFDIKWSPVGGNAGPFLAQADADG----GL-----   94 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~dg----~i-----   94 (331)
                      ..|.+|+          ..| +.+++............. .....|.+|++.|.+   ...|.++...|    .+     
T Consensus        23 g~l~vgt----------~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~---~~~l~~g~~~g~~g~gl~~s~D   88 (394)
T 3b7f_A           23 VMLLVAT----------IKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPRE---PERMLMAARTGHLGPTVFRSDD   88 (394)
T ss_dssp             CEEEEEE----------TTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSS---TTCEEEEEEC--CCEEEEEESS
T ss_pred             CEEEEEe----------cCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCC---CCeEEEEecCCCCCccEEEeCC
Confidence            4677777          455 555655431112333211 223569999999843   23444454444    34     


Q ss_pred             ---EEecCCCc--cc----------CccEEEEEEcCC--CCeEEEEecCCeEEEEEccccceeeeeeee-----------
Q 020107           95 ---LRDITGEK--IS----------SSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQWK-----------  146 (331)
Q Consensus        95 ---iw~~~~~~--~~----------~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------  146 (331)
                         -|......  ..          ...|.++++.|.  ...+.++...+.|...+-....++.+....           
T Consensus        89 ~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~  168 (394)
T 3b7f_A           89 GGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGG  168 (394)
T ss_dssp             TTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCC
T ss_pred             CCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccc
Confidence               23222111  01          125778889873  566777776666655433323333222110           


Q ss_pred             -----cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec-ccC-C--------CcceEEEEEecCCCCEE
Q 020107          147 -----AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN-SKI-H--------KMGVCCIASIPSDSNTL  211 (331)
Q Consensus       147 -----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~-~--------~~~v~~~~~~~~~~~~l  211 (331)
                           .....+.++.++|.++..+..+..++.|...+- .++.-..+.. ... +        ...+.+|.++|.++..|
T Consensus       169 ~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l  247 (394)
T 3b7f_A          169 EQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDIL  247 (394)
T ss_dssp             C----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEE
T ss_pred             cccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEE
Confidence                 012357889998755555555554454433322 1221111110 000 0        13488999998555677


Q ss_pred             EEEecCCeEEEEEecCCCCCceeeeeecC----CceEEEEECCCCCCeEEEEE
Q 020107          212 LTGSYDEYLRVWDVRSISKPVNETSVCLG----GGVWRIKHHPFIPGLVLAAC  260 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~  260 (331)
                      +.+...+ |...+  ...+..........    ..+..++++|..++.+.++.
T Consensus       248 ~vg~~~g-l~~s~--D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t  297 (394)
T 3b7f_A          248 YQQNHCG-IYRMD--RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP  297 (394)
T ss_dssp             EEEETTE-EEEEE--TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred             EEEcCCe-EEEeC--CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence            7776544 43332  22222221111011    23567888876556666653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.75  E-value=0.12  Score=39.15  Aligned_cols=152  Identities=7%  Similarity=-0.144  Sum_probs=80.8

Q ss_pred             cEEEEEEcCCCCeEEEEecCCeEEEEEccccceee----eeeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107          107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEV----LQQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE  181 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  181 (331)
                      .+..++|+|++.+-++  .+|.+.-.+..+.....    -..+- ..-....++.|.| ++.+.++  .||.|.-++..+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence            5669999998885555  77877666654421100    01110 0011147889998 7676666  569988887644


Q ss_pred             CCceeeeec-c---cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC------ceeeee-ecCCceEEEEECC
Q 020107          182 SPFKLAFQN-S---KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP------VNETSV-CLGGGVWRIKHHP  250 (331)
Q Consensus       182 ~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------~~~~~~-~~~~~v~~~~~~~  250 (331)
                      .....-+.. .   ..-=..+..|.+.| ++.+.++.  |+.+.-  ...+...      ...... ..-..-..+.|.|
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr--~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYK--ALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEE--ECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             CCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEe--cCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            222111100 0   00114679999999 88877776  777433  2221111      111011 1122334466888


Q ss_pred             CCCCeEEEEEecCcEEEEEEcCc
Q 020107          251 FIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      +  +.+.+.. ++.  +|.....
T Consensus       192 ~--G~l~~v~-~g~--~Y~~~~p  209 (236)
T 1tl2_A          192 V--GTLFGVQ-GGK--FYEDYPP  209 (236)
T ss_dssp             T--SCEEEEE-TTE--EEEESCC
T ss_pred             C--CcEEEEe-CCe--EEecCCc
Confidence            8  4455544 443  7776554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.75  E-value=0.16  Score=40.80  Aligned_cols=183  Identities=11%  Similarity=0.068  Sum_probs=93.2

Q ss_pred             CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCc-EeEEEEcCCCCCCCCeEEEEcC----CccE----
Q 020107           24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG-IFDIKWSPVGGNAGPFLAQADA----DGGL----   94 (331)
Q Consensus        24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~----dg~i----   94 (331)
                      +.+++.|++.  .    ..-..+.+||..+..  ...+....... -.++... +    +.+++.|+.    ++..    
T Consensus        25 ~~i~v~GG~~--~----~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~-~----~~lyv~GG~~~~~~~~~~~~~   91 (308)
T 1zgk_A           25 RLIYTAGGYF--R----QSLSYLEAYNPSNGT--WLRLADLQVPRSGLAGCVV-G----GLLYAVGGRNNSPDGNTDSSA   91 (308)
T ss_dssp             CCEEEECCBS--S----SBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-T----TEEEEECCEEEETTEEEECCC
T ss_pred             CEEEEEeCcC--C----CCcceEEEEcCCCCe--EeECCCCCcccccceEEEE-C----CEEEEECCCcCCCCCCeecce
Confidence            3677877741  1    124568899987764  22221111111 1122222 3    557777776    3322    


Q ss_pred             --EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecC-----CeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107           95 --LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSD-----GSVSIVSVVESQLEVLQQWKAHEFELWATSFDV  159 (331)
Q Consensus        95 --iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  159 (331)
                        ++++.+..-        .......+.+  +++.++.|+.+     ..+.+||+.+.++..+..+.........+.+  
T Consensus        92 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--  167 (308)
T 1zgk_A           92 LDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--  167 (308)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred             EEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--
Confidence              555544321        1111112222  55666666643     4688899988776555443322222222332  


Q ss_pred             CCCcEEEEEcCC-----CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecCC
Q 020107          160 HQPHMVYTGSDD-----CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRSI  228 (331)
Q Consensus       160 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~  228 (331)
                       ++.+++.|+.+     ..+.+||+.+.+-...-.. +.....-..+.+   ++.+++.|+.+     ..+.+||+.+.
T Consensus       168 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          168 -NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM-NTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             -TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             -CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC-CCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence             45777777754     4688999887643222111 111222222333   56788888765     45888998763

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.74  E-value=0.18  Score=43.18  Aligned_cols=108  Identities=13%  Similarity=0.094  Sum_probs=59.3

Q ss_pred             cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec------ccceeEEEeeCCC---CCcEEEEEcC-------
Q 020107          107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA------HEFELWATSFDVH---QPHMVYTGSD-------  170 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~~l~~~~~-------  170 (331)
                      ....|+|.|+|+++++-...+.|++++..+++...+..+..      .......++|+|+   ++.+.++-+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            34688888888755554434468877765454333333321      2456778999984   4444444332       


Q ss_pred             -----CCeEEEEEccCCC-----ceeeeeccc-CCCcceEEEEEecCCCCEEEEEe
Q 020107          171 -----DCKFSGWDIRESP-----FKLAFQNSK-IHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       171 -----dg~i~i~d~~~~~-----~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                           ...|.-++.....     ....+...+ ........|.|.| ++.+.++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence                 2355556554321     111222111 1123478999999 887776654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.74  E-value=0.17  Score=40.86  Aligned_cols=108  Identities=8%  Similarity=0.012  Sum_probs=58.5

Q ss_pred             cCCCCeEEEEec----C-------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC--------CeE
Q 020107          114 NPSATSITVGLS----D-------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--------CKF  174 (331)
Q Consensus       114 ~~~~~~l~~~~~----d-------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i  174 (331)
                      ..++..++.|+.    +       ..+..||+.++++..+..+.........+.+   ++.+++.|+.+        ..+
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~  119 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSV  119 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceE
Confidence            346677777773    1       1277889988776554433321111122222   45777777732        458


Q ss_pred             EEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-C-----CeEEEEEecCC
Q 020107          175 SGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-D-----EYLRVWDVRSI  228 (331)
Q Consensus       175 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~  228 (331)
                      .+||+.+.+-...-.. +.....-..+.+   ++.+++.|+. +     ..+.+||+.+.
T Consensus       120 ~~~d~~~~~W~~~~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A          120 MCYDRLSFKWGESDPL-PYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             EEEETTTTEEEECCCC-SSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             EEECCCCCcEeECCCC-CCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            8999987642221111 111222222222   5678888876 2     45888888763

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.73  E-value=0.18  Score=41.23  Aligned_cols=144  Identities=12%  Similarity=0.012  Sum_probs=80.4

Q ss_pred             ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec---ccCCCcceEEEEEecC---CCCEEEEE--ecCCe
Q 020107          148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN---SKIHKMGVCCIASIPS---DSNTLLTG--SYDEY  219 (331)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~~~~---~~~~l~~~--~~d~~  219 (331)
                      .-...+.++|.| ++.++++--..|.|++++...++.......   ..........|+++|.   ++.+.++-  ..++.
T Consensus        30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            344578999999 777777665589999998765543222111   1123567899999982   24333332  23455


Q ss_pred             EEEEEecCCC----C--Cceeeee----ecCCceEEEEECCCCCCeEEEEEe-------------cCcEEEEEEcCccc-
Q 020107          220 LRVWDVRSIS----K--PVNETSV----CLGGGVWRIKHHPFIPGLVLAACM-------------HNGFAVVKVGGEKA-  275 (331)
Q Consensus       220 i~iwd~~~~~----~--~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-  275 (331)
                      |.-|.+....    .  ....++.    ........|+|.|++ .++++.+.             .+.  |+++..... 
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~--IlRi~~dG~i  185 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGK--ILRMTPDGEP  185 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTC--EEEECTTSSB
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCE--EEEEeCCCCc
Confidence            6666655411    1  1111111    112234679999996 56666543             234  777765421 


Q ss_pred             --------ceeEEeecCCcceeeeeecCCC
Q 020107          276 --------EVLETYAKHGSLAYGADWQRGR  297 (331)
Q Consensus       276 --------~~~~~~~~h~~~v~~~~~~~~~  297 (331)
                              ..+. -.+|. ....++|.|++
T Consensus       186 p~~nPf~~~~i~-a~G~R-Np~Gla~dp~G  213 (347)
T 3das_A          186 APGNPFPGSPVY-SYGHR-NVQGLAWDDKQ  213 (347)
T ss_dssp             CTTCSSTTCCEE-EBCCS-BCCEEEECTTC
T ss_pred             cCCCCCCCCeEE-eeCCC-CcceEEECCCC
Confidence                    1122 22554 45689999976

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.61  E-value=0.087  Score=44.07  Aligned_cols=115  Identities=10%  Similarity=-0.010  Sum_probs=77.3

Q ss_pred             cEEEEEEcCCCCeEEEEecCCeEEEEEccccce----------eeeeeeec------ccceeEEEeeCCCC--CcEEEEE
Q 020107          107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQL----------EVLQQWKA------HEFELWATSFDVHQ--PHMVYTG  168 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~------~~~~v~~~~~~~~~--~~~l~~~  168 (331)
                      .+..+..+|+|++||..+. ..|.|..+..+..          ...+.+.-      ...+|..+.|+|..  +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            4567889999999988765 5788888873210          01122322      24679999999953  3588899


Q ss_pred             cCCCeEEEEEccCCCceee-eec------ccCCCcceEEEEEecCCCCEEEEEe--cCCeEEEE
Q 020107          169 SDDCKFSGWDIRESPFKLA-FQN------SKIHKMGVCCIASIPSDSNTLLTGS--YDEYLRVW  223 (331)
Q Consensus       169 ~~dg~i~i~d~~~~~~~~~-~~~------~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~iw  223 (331)
                      ..|+.|++||+......+. +..      .......|.+++|.+ ++-.|...+  +.|-|.-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEE
Confidence            9999999999986332222 211      112336789999998 777777755  77777553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.61  E-value=0.2  Score=40.20  Aligned_cols=190  Identities=11%  Similarity=0.085  Sum_probs=92.6

Q ss_pred             CCCeEEEEec----C-----CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-----CeEEEEEccC
Q 020107          116 SATSITVGLS----D-----GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-----CKFSGWDIRE  181 (331)
Q Consensus       116 ~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  181 (331)
                      ++..++.|+.    +     ..+.+||+.+.++..+..+.........+.+   ++.+++.|+.+     ..+.+||+.+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence            5566666665    2     4688899988776555443322222222332   45777777643     4688899887


Q ss_pred             CCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCe
Q 020107          182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGL  255 (331)
Q Consensus       182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~  255 (331)
                      .+-...-.. +.....-..+.+   ++.+++.|+.+     ..+.+||+.+..  ..... ......-.+++.. ++ .+
T Consensus       147 ~~W~~~~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~-~i  218 (308)
T 1zgk_A          147 DEWHLVAPM-LTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL-HN-CI  218 (308)
T ss_dssp             TEEEECCCC-SSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-TT-EE
T ss_pred             CeEeECCCC-CccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE-CC-EE
Confidence            643222111 111222222222   56777888765     458888887531  11100 0111111122222 21 45


Q ss_pred             EEEEEec-----CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC-----CeEEEEcCC
Q 020107          256 VLAACMH-----NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD-----RLLRIWMPE  325 (331)
Q Consensus       256 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d-----~~i~iW~~~  325 (331)
                      ++.+|.+     +.+.++++.......+..+....... ++... ++         ++++.|| .+     ..+.+||++
T Consensus       219 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~---------~i~v~GG-~~~~~~~~~v~~yd~~  286 (308)
T 1zgk_A          219 YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITVH-QG---------RIYVLGG-YDGHTFLDSVECYDPD  286 (308)
T ss_dssp             EEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TT---------EEEEECC-BCSSCBCCEEEEEETT
T ss_pred             EEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEEEE-CC---------EEEEEcC-cCCCcccceEEEEcCC
Confidence            5555443     44556665554333332222111111 12222 33         6788887 44     457888887


Q ss_pred             Ccc
Q 020107          326 SDC  328 (331)
Q Consensus       326 ~~~  328 (331)
                      +..
T Consensus       287 ~~~  289 (308)
T 1zgk_A          287 TDT  289 (308)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.49  E-value=0.21  Score=41.09  Aligned_cols=150  Identities=7%  Similarity=-0.062  Sum_probs=77.2

Q ss_pred             cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee----ecccceeEEEeeCCC---CCcEEEEEcC-------CC
Q 020107          107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW----KAHEFELWATSFDVH---QPHMVYTGSD-------DC  172 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~~l~~~~~-------dg  172 (331)
                      ....|+|.|+++.|+++...|.|++++........+..+    .........++++|+   ++.+.++-..       ..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            356888999988455556678888888543211111111    112345688999984   3444444332       23


Q ss_pred             eEEEEEccCCC----cee-eeeccc---CCCcceEEEEEecCCCCEEEEEec-------------CCeEEEEEecCCC--
Q 020107          173 KFSGWDIRESP----FKL-AFQNSK---IHKMGVCCIASIPSDSNTLLTGSY-------------DEYLRVWDVRSIS--  229 (331)
Q Consensus       173 ~i~i~d~~~~~----~~~-~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~--  229 (331)
                      .|..+++....    ... .+...+   ........|.|.| ++.+.++.+.             .|.|.-+|....-  
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            56666664321    111 122211   0112245799999 8866555433             2456666654310  


Q ss_pred             -C--------CceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107          230 -K--------PVNETSVCLGGGVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       230 -~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  259 (331)
                       .        .......++ .....++|+|.. +.+.++
T Consensus       178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~-g~l~~~  214 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWS-NALWLN  214 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECC-SEEEEEEEETTT-TEEEEE
T ss_pred             CCCCcCCCCCCccEEEEcC-cCccceEEECCC-CCEEEE
Confidence             0        111111222 347889999943 444444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.36  E-value=0.41  Score=40.92  Aligned_cols=109  Identities=12%  Similarity=0.065  Sum_probs=61.6

Q ss_pred             ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc-----CCCcceEEEEEecCC---CCEEEEEe-c----
Q 020107          150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK-----IHKMGVCCIASIPSD---SNTLLTGS-Y----  216 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~---~~~l~~~~-~----  216 (331)
                      ...+.++|.| ++.++++-...+.|++++...++.........     .....+..|+|+| +   ...|+... .    
T Consensus        27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEeccccC
Confidence            3467999998 77777765544578888865554322222111     1246688999999 4   44444443 2    


Q ss_pred             --------CCeEEEEEecCCCCCc---eeeee----ecCCceEEEEECCCCCCeEEEEEe
Q 020107          217 --------DEYLRVWDVRSISKPV---NETSV----CLGGGVWRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       217 --------d~~i~iwd~~~~~~~~---~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~  261 (331)
                              ...|.-|++......+   ..++.    ........|+|.|++ .++++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECC
Confidence                    2356666654321111   11111    112347889999997 56666653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.84  E-value=0.55  Score=37.74  Aligned_cols=101  Identities=7%  Similarity=-0.006  Sum_probs=52.2

Q ss_pred             EEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-----C------CeEEEEEccCCCceeee
Q 020107          120 ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-----D------CKFSGWDIRESPFKLAF  188 (331)
Q Consensus       120 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d------g~i~i~d~~~~~~~~~~  188 (331)
                      ++.|+  ..+..||..++++.. ..+..........+... ++.+++.|+.     .      ..+..||..+.+-...-
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            44454  578999999887743 22321111122222222 5677777773     1      12778888876432211


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecC--------CeEEEEEecCC
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYD--------EYLRVWDVRSI  228 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~  228 (331)
                      .. +.....-..+.+   ++.+++.|+.+        ..+.+||..+.
T Consensus        84 ~~-p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~  127 (315)
T 4asc_A           84 PL-PSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSF  127 (315)
T ss_dssp             CB-SSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTT
T ss_pred             CC-CcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCC
Confidence            11 111111122222   56777777743        35888888763

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.68  E-value=1.2  Score=40.44  Aligned_cols=190  Identities=11%  Similarity=0.062  Sum_probs=99.5

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-e------eecCcEeEEEEcC-CCCCCCCeEEEEcCCcc---
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-R------MDTAGIFDIKWSP-VGGNAGPFLAQADADGG---   93 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~---   93 (331)
                      .+++.|++.. .     .-..+.+||..+..  ...+. .      .....-.++...+ +    +.+++.|+.++.   
T Consensus       399 ~iyv~GG~~~-~-----~~~~v~~yd~~~~~--W~~~~~~~p~~~~p~~R~~hs~~~~~~~----~~lyv~GG~~~~~~~  466 (695)
T 2zwa_A          399 DVFYMGGSNP-Y-----RVNEILQLSIHYDK--IDMKNIEVSSSEVPVARMCHTFTTISRN----NQLLLIGGRKAPHQG  466 (695)
T ss_dssp             CEEEECCBSS-S-----BCCCEEEEEECSSC--EEEEECCCCCSCCCCCCBSCEEEEETTT----TEEEEECCBSSTTCB
T ss_pred             EEEEECCCCC-C-----CcCcEEEEECCCCe--EEEeccCCCCCCCCccccceEEEEEccC----CEEEEEcCCCCCCCc
Confidence            5677776432 1     24568889988765  33332 1      1111122333333 5    668888876542   


Q ss_pred             E----EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCC--eEEEEEccccceeeeee---eecccceeEEEee
Q 020107           94 L----LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDG--SVSIVSVVESQLEVLQQ---WKAHEFELWATSF  157 (331)
Q Consensus        94 i----iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~---~~~~~~~v~~~~~  157 (331)
                      .    +++..+..-       ....-.++....+++.++.|+.++  .+.+||+.+.++..+..   +........++.+
T Consensus       467 ~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~  546 (695)
T 2zwa_A          467 LSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEF  546 (695)
T ss_dssp             CCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEE
T ss_pred             cccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEE
Confidence            2    555554321       111112233323777888887644  79999999887755443   2211222233555


Q ss_pred             CCCCCcEEEEEcC--C-----CeEEEEEccCCCc------eeeeecccCCCcceEEEEEecCCCCEEEEEecC-------
Q 020107          158 DVHQPHMVYTGSD--D-----CKFSGWDIRESPF------KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-------  217 (331)
Q Consensus       158 ~~~~~~~l~~~~~--d-----g~i~i~d~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------  217 (331)
                      ....+.+++.|+.  +     ..+.+||+.+...      ...............++.+.  ++.+++.|+.+       
T Consensus       547 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~~~~~  624 (695)
T 2zwa_A          547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSGLFDR  624 (695)
T ss_dssp             ETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSCCCCT
T ss_pred             eCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCCCCCC
Confidence            5423677788775  2     4688999988761      11111000112222333332  37788888753       


Q ss_pred             -CeEEEEEecCC
Q 020107          218 -EYLRVWDVRSI  228 (331)
Q Consensus       218 -~~i~iwd~~~~  228 (331)
                       ..+.+||+.+.
T Consensus       625 ~~~v~~yd~~t~  636 (695)
T 2zwa_A          625 TNSIISLDPLSE  636 (695)
T ss_dssp             TTSEEEEETTTT
T ss_pred             CCeEEEEECCCC
Confidence             45788888763

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.57  E-value=0.72  Score=37.10  Aligned_cols=108  Identities=10%  Similarity=0.034  Sum_probs=57.1

Q ss_pred             cCCCCeEEEEec----CC-------eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-------CeEE
Q 020107          114 NPSATSITVGLS----DG-------SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-------CKFS  175 (331)
Q Consensus       114 ~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~  175 (331)
                      ..++..++.|+.    ++       .+..||..+.++..+..+.........+.+   ++.+++.|+.+       ..+.
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccceEE
Confidence            346667777763    12       277889888776554433322212222222   45777777753       3578


Q ss_pred             EEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC------CeEEEEEecCC
Q 020107          176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD------EYLRVWDVRSI  228 (331)
Q Consensus       176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~  228 (331)
                      +||+.+.+-...-.. +.....-..+.  . ++.+++.|+.+      ..+.+||+.+.
T Consensus       131 ~yd~~~~~W~~~~~~-p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          131 CYDPVAAKWSEVKNL-PIKVYGHNVIS--H-NGMIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             EEETTTTEEEEECCC-SSCEESCEEEE--E-TTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             EEeCCCCCEeECCCC-CCcccccEEEE--E-CCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence            888887643222111 11111112222  2 67777777752      35888888763

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.41  E-value=0.81  Score=37.49  Aligned_cols=96  Identities=7%  Similarity=0.052  Sum_probs=49.4

Q ss_pred             CCCeEEEEec-CCeEEEEEccc--cceeeeeeee-cccceeEEEeeCCCCCcEEEEEcC-C---------CeEEEEEccC
Q 020107          116 SATSITVGLS-DGSVSIVSVVE--SQLEVLQQWK-AHEFELWATSFDVHQPHMVYTGSD-D---------CKFSGWDIRE  181 (331)
Q Consensus       116 ~~~~l~~~~~-dg~i~i~d~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-d---------g~i~i~d~~~  181 (331)
                      ++..++.|+. ...+.+||+.+  .++..+..+. ........+.+   ++.+++.|+. +         ..+.+||+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            4555555554 45788899874  5554444333 11111222222   4577777775 2         4688999987


Q ss_pred             CCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107          182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD  217 (331)
Q Consensus       182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  217 (331)
                      .+-...-...+.....-.++.  . ++.+++.|+.+
T Consensus        96 ~~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~  128 (357)
T 2uvk_A           96 NSWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVN  128 (357)
T ss_dssp             TEEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCC
T ss_pred             CcEEECCCCCCcccccceEEE--E-CCEEEEEeCcC
Confidence            643222111101122222233  2 67888888764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.40  E-value=0.62  Score=35.26  Aligned_cols=107  Identities=8%  Similarity=-0.124  Sum_probs=63.6

Q ss_pred             ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcc--------eEEEEEecCCCCEEEEEecCCeEE
Q 020107          150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMG--------VCCIASIPSDSNTLLTGSYDEYLR  221 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~d~~i~  221 (331)
                      ..+..++|+| ++.+.++  .+|.+.-.+..+... ..+..   ....        -.++.|.| ++.+.++  .||.|.
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~-~~W~~---s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iy  110 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDN-DNWMG---RAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLY  110 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT-CCHHH---HCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEE
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCc-ccccc---cccEecccccccceEEEECC-CCCEEEe--CCCEEE
Confidence            3577999999 7776665  678777666554332 11211   1222        37889999 8877777  569888


Q ss_pred             EEEecCCCC-Cce-eeeee---cCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107          222 VWDVRSISK-PVN-ETSVC---LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG  271 (331)
Q Consensus       222 iwd~~~~~~-~~~-~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (331)
                      -++-.+... ... .-..-   -=..+..|.+.|+  +.|.+.. ++.  +++..
T Consensus       111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~--G~Lyav~-dg~--lyr~~  160 (236)
T 1tl2_A          111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPN--GYLYAVH-GQQ--FYKAL  160 (236)
T ss_dssp             EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTT--SCEEEEE-TTE--EEEEC
T ss_pred             EeCCCcCCCCceeccccEeccCCCCceEEEEECCC--ceEEEEe-CCc--EEecC
Confidence            777533211 110 00011   1146799999999  5666666 665  44433

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.38  E-value=1.1  Score=40.68  Aligned_cols=110  Identities=13%  Similarity=0.201  Sum_probs=60.5

Q ss_pred             CCCCeEEEEecC----CeEEEEEccccceeeee-e-----eecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEE
Q 020107          115 PSATSITVGLSD----GSVSIVSVVESQLEVLQ-Q-----WKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWD  178 (331)
Q Consensus       115 ~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~-~-----~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d  178 (331)
                      .++..++.|+.+    ..+.+||+.++++..+. .     +......-..+.+.. ++.+++.|+.+      ..+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence            355666666643    46888999888775544 2     111111222333321 55777777744      3578899


Q ss_pred             ccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC--eEEEEEecCC
Q 020107          179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE--YLRVWDVRSI  228 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~  228 (331)
                      +.+.+-...-.. +.....- +++... ++.+++.|+.++  .+.+||..+.
T Consensus       475 ~~t~~W~~~~~~-p~~R~~h-~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~  523 (695)
T 2zwa_A          475 MKTREWSMIKSL-SHTRFRH-SACSLP-DGNVLILGGVTEGPAMLLYNVTEE  523 (695)
T ss_dssp             TTTTEEEECCCC-SBCCBSC-EEEECT-TSCEEEECCBCSSCSEEEEETTTT
T ss_pred             CCCCcEEECCCC-CCCcccc-eEEEEc-CCEEEEECCCCCCCCEEEEECCCC
Confidence            887542222111 1111222 222223 678888888655  6888888763

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.03  E-value=1.3  Score=43.34  Aligned_cols=198  Identities=9%  Similarity=0.080  Sum_probs=112.1

Q ss_pred             EEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-Cceeeeec
Q 020107          112 EWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQN  190 (331)
Q Consensus       112 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~  190 (331)
                      -.+|..+.+|.-. ..++.|+|+++...  ++.... ..+|.--.|-  +.+.|+..+ +..|..|++... .+.+.+..
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~k--lks~~~-~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR  144 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSK--MKAHTM-TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDR  144 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhh--hccccc-CCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence            3567776666654 68999999988643  444443 3356667776  345666555 678999999642 22333333


Q ss_pred             cc-CCCcceEEEEEecCCCCEEEEEe-------cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC-CCeEEEEEe
Q 020107          191 SK-IHKMGVCCIASIPSDSNTLLTGS-------YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI-PGLVLAACM  261 (331)
Q Consensus       191 ~~-~~~~~v~~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~  261 (331)
                      .. -....|..-..++ +.++++..|       -.|.+.+|.....   +.+...+|.+....+...... +..+++-..
T Consensus       145 ~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~---~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~  220 (1630)
T 1xi4_A          145 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK---VSQPIEGHAASFAQFKMEGNAEESTLFCFAV  220 (1630)
T ss_pred             chhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccc---cchhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence            00 0144566666777 666666543       3578999988763   222235665555444433211 122333322


Q ss_pred             c----CcEEEEEEcCc-ccceeEE------eec---CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          262 H----NGFAVVKVGGE-KAEVLET------YAK---HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       262 ~----~~~~~~~~~~~-~~~~~~~------~~~---h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .    +.+++..+... .+.....      +-.   -.+--.++..++..         .++.... .-|.|+++|++++
T Consensus       221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~---------g~iy~it-k~G~~~~~d~~t~  290 (1630)
T 1xi4_A          221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH---------DVVFLIT-KYGYIHLYDLETG  290 (1630)
T ss_pred             ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc---------CEEEEEe-cCceEEEEecccc
Confidence            2    57778888553 1111110      000   12223345555554         4677777 8999999999998


Q ss_pred             ccC
Q 020107          328 CLT  330 (331)
Q Consensus       328 ~~~  330 (331)
                      ...
T Consensus       291 ~~i  293 (1630)
T 1xi4_A          291 TCI  293 (1630)
T ss_pred             hhh
Confidence            653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.80  E-value=1.4  Score=36.07  Aligned_cols=51  Identities=6%  Similarity=-0.212  Sum_probs=29.6

Q ss_pred             CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC------CCeEEEEEc
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD------DCKFSGWDI  179 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~  179 (331)
                      ..+.+||+.+.++..+..+......-.+++..  ++.+++.|+.      ...+.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence            57899999988876655443211111223322  4567777763      345677876

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.18  E-value=2  Score=35.29  Aligned_cols=218  Identities=17%  Similarity=0.063  Sum_probs=109.8

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc---------cCccEEEEEEcCC---CCeEEEEec----C---
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI---------SSSMCLCLEWNPS---ATSITVGLS----D---  126 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~---------~~~~v~~~~~~~~---~~~l~~~~~----d---  126 (331)
                      .....|+|.|+    ++++++ ..+|.| +++....+.         .......|+++|+   +..|+++..    +   
T Consensus        29 ~~P~~ia~~pd----G~l~V~-e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGG----GRYLVT-ERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEET----TEEEEE-ETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCC----CeEEEE-eCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            45688999999    765554 555777 444222100         1245788999997   556665543    2   


Q ss_pred             -CeEEEEEcccc--ce---eee-eeeec-ccceeEEEeeCCCCCcEEEEEcC-------------CCeEEEEEccCCC--
Q 020107          127 -GSVSIVSVVES--QL---EVL-QQWKA-HEFELWATSFDVHQPHMVYTGSD-------------DCKFSGWDIRESP--  183 (331)
Q Consensus       127 -g~i~i~d~~~~--~~---~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~--  183 (331)
                       ..|..++....  ..   +.+ ..+.. .......++|.| ++.++++.+.             .|.|.-++....-  
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~  182 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA  182 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence             56777776643  11   111 11221 111246789998 7776666432             2455555554210  


Q ss_pred             -----ceeeeecccCCCcceEEEEEecCCCCEEEEEecCC---eEEEEEecCCC-----------------CCceeeeee
Q 020107          184 -----FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVWDVRSIS-----------------KPVNETSVC  238 (331)
Q Consensus       184 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~-----------------~~~~~~~~~  238 (331)
                           ....+..  ++ .....++|+|.++.++++-....   .|.+..  .+.                 .++.. ...
T Consensus       183 ~npf~~~~i~a~--G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~-~~~  256 (354)
T 3a9g_A          183 DNPFPNSPIWSY--GH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVID-TGS  256 (354)
T ss_dssp             TSSSTTCCEEEE--CC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEE-CTT
T ss_pred             CCCCCCCcEEEE--cc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEee-cCC
Confidence                 0112221  12 23467899984455544432221   233322  211                 12222 101


Q ss_pred             cCCceEEEEECCC-----CCCeEEEEE-ecCcEEEEEEcCccccee--EEee-cCCcceeeeeecCCC
Q 020107          239 LGGGVWRIKHHPF-----IPGLVLAAC-MHNGFAVVKVGGEKAEVL--ETYA-KHGSLAYGADWQRGR  297 (331)
Q Consensus       239 ~~~~v~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~-~h~~~v~~~~~~~~~  297 (331)
                      .......++|...     -++.++++. ..+.+..+++... ++..  ..+. +....+.++++.|++
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~~~rp~~v~~~pDG  323 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN-MEVRKISTFFKNVFGRLRDVVIDDDG  323 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG-GCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred             CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC-CcccceeeeccCCCCCeeEEEECCCC
Confidence            2345777888421     114444443 4455555555542 2221  2232 224578899999998

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.42  E-value=2.5  Score=33.89  Aligned_cols=99  Identities=10%  Similarity=-0.015  Sum_probs=50.2

Q ss_pred             EEEEecCCeEEEEEccccceeeeeeeec-ccceeEEEeeCCCCCcEEEEEcC----CC-------eEEEEEccCCCceee
Q 020107          120 ITVGLSDGSVSIVSVVESQLEVLQQWKA-HEFELWATSFDVHQPHMVYTGSD----DC-------KFSGWDIRESPFKLA  187 (331)
Q Consensus       120 l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~  187 (331)
                      ++.|+.  .+..||..++++.. ..+.. ....-.+++ . .++.+++.|+.    ++       .+..||..+.+-...
T Consensus        19 ~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~-~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   93 (318)
T 2woz_A           19 LLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIV-T-QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL   93 (318)
T ss_dssp             EEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEE-C-SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred             hhcccc--ceEEECCCCCceec-ccCCccCCccceEEE-E-ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence            444443  47899999887644 22221 111122232 2 25677888873    12       277888876643222


Q ss_pred             eecccCCCcceEEEEEecCCCCEEEEEecC-------CeEEEEEecC
Q 020107          188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYD-------EYLRVWDVRS  227 (331)
Q Consensus       188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~  227 (331)
                      -.. +.....-..+.+   ++.+++.|+.+       ..+.+||..+
T Consensus        94 ~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~  136 (318)
T 2woz_A           94 PPL-PSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVA  136 (318)
T ss_dssp             SCB-SSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTT
T ss_pred             CCC-CccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCC
Confidence            111 111112222222   56777888764       2477788765

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.39  E-value=2.8  Score=34.38  Aligned_cols=139  Identities=11%  Similarity=0.003  Sum_probs=73.4

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------c------cCccEEEEEEcCC---CCeEEEEec-----
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------I------SSSMCLCLEWNPS---ATSITVGLS-----  125 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~------~~~~v~~~~~~~~---~~~l~~~~~-----  125 (331)
                      .....|+|.|+    ++.|.++...|.| +.+.....      .      .......|+++|+   +..|++...     
T Consensus        18 ~~P~~i~~~pd----G~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           18 DHPWALAFLPD----NHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             SSEEEEEECST----TCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             CCcEEEEEcCC----CCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            45689999999    7734445556877 55432210      0      1234588999996   556655532     


Q ss_pred             ---CCeEEEEEcccc--ceeeee----eeec---ccceeEEEeeCCCCCcEEEEEcC-------------CCeEEEEEcc
Q 020107          126 ---DGSVSIVSVVES--QLEVLQ----QWKA---HEFELWATSFDVHQPHMVYTGSD-------------DCKFSGWDIR  180 (331)
Q Consensus       126 ---dg~i~i~d~~~~--~~~~~~----~~~~---~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~  180 (331)
                         ...|..+++...  +.....    .+..   .......++|.| ++.++++.+.             .|.|.-+|..
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence               235666666432  111111    1110   111245799998 6666666543             2466666665


Q ss_pred             CCC------------ceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107          181 ESP------------FKLAFQNSKIHKMGVCCIASIPSDSNTLLT  213 (331)
Q Consensus       181 ~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  213 (331)
                      ..-            ....+..   --.....++|+|.++.++++
T Consensus       173 G~~p~~npf~~~~~~~~~i~a~---G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          173 GEIPDDNPFIKESGVRAEIWSY---GIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             SCCCTTCTTTTSTTSCTTEEEE---CCSEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCCCcCCCCCCccEEEE---cCcCccceEEECCCCCEEEE
Confidence            320            1122221   12346789999844444443

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=92.71  E-value=6.1  Score=36.48  Aligned_cols=147  Identities=10%  Similarity=0.090  Sum_probs=76.4

Q ss_pred             cCcEeEEEEcCCCCCCCCeEEEEcCCccE--------EEecCCCcc-----cCccEEEEEEcCCC-CeEEEEecCCe---
Q 020107           66 TAGIFDIKWSPVGGNAGPFLAQADADGGL--------LRDITGEKI-----SSSMCLCLEWNPSA-TSITVGLSDGS---  128 (331)
Q Consensus        66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i--------iw~~~~~~~-----~~~~v~~~~~~~~~-~~l~~~~~dg~---  128 (331)
                      .+.|.+|+++|.++   ..+.++...+.+        -|.......     ....+.+|+++|.. +.++++..+..   
T Consensus        14 ~g~i~~i~~~p~~~---~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~   90 (789)
T 1sqj_A           14 GGYITGIVAHPKTK---DLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE   90 (789)
T ss_dssp             CSCEEEEEECSSST---TCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred             CCcEEEEEECCCCC---CEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCc
Confidence            45799999999853   366666666666        454433211     23468999999853 44555443211   


Q ss_pred             -EEEEEccc-c-ceeeeee-ee--c---ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC-CCceeeeeccc---CCC
Q 020107          129 -VSIVSVVE-S-QLEVLQQ-WK--A---HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE-SPFKLAFQNSK---IHK  195 (331)
Q Consensus       129 -i~i~d~~~-~-~~~~~~~-~~--~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~---~~~  195 (331)
                       -.||.... + .++.+.. +.  .   ....+..++++|.+++.++.+...+.|  |-... ++.-..+...+   ...
T Consensus        91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~  168 (789)
T 1sqj_A           91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNG  168 (789)
T ss_dssp             CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTT
T ss_pred             ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCC
Confidence             23333332 2 2222211 00  0   011355688888666777777644433  33322 22211111100   012


Q ss_pred             cceEEEEEecCCCCEEEEEecC
Q 020107          196 MGVCCIASIPSDSNTLLTGSYD  217 (331)
Q Consensus       196 ~~v~~~~~~~~~~~~l~~~~~d  217 (331)
                      ..+..|.++|.++..++.+..+
T Consensus       169 ~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          169 IGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             TCEEEEEECTTSTTCEEEEESS
T ss_pred             CCeEEEEECCCCCCEEEEEEcC
Confidence            4688899998666666666654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.44  E-value=3.8  Score=33.47  Aligned_cols=109  Identities=12%  Similarity=-0.026  Sum_probs=62.7

Q ss_pred             ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee----ecccceeEEEeeCCC---CCcEEEEE--cCCCeEEE
Q 020107          106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW----KAHEFELWATSFDVH---QPHMVYTG--SDDCKFSG  176 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~~l~~~--~~dg~i~i  176 (331)
                      .....|+|.|++..+++--..|.|++++...++...+..+    .........++++|+   ++.+.++-  ..+..|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            3457889999988666554489998888665544333222    223456789999983   34443332  23456666


Q ss_pred             EEccCCC--------ceeeeeccc-CCCcceEEEEEecCCCCEEEEEe
Q 020107          177 WDIRESP--------FKLAFQNSK-IHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       177 ~d~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      |.+....        ....+...+ ........|.|.| ++.+.++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~G  158 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTG  158 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECB
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEEC
Confidence            6655421        112222111 1122346799999 887777754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.30  E-value=4.6  Score=34.14  Aligned_cols=197  Identities=7%  Similarity=0.081  Sum_probs=115.5

Q ss_pred             eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec----CcEeEEEEcCCCCCC
Q 020107            6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT----AGIFDIKWSPVGGNA   81 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~   81 (331)
                      +.+..++.-=+|...    +.|+.-+           +..|+-|++.....+.+.+ ..|.    ..|..-+-+++    
T Consensus       102 ~~~~e~VvfWkWis~----~~l~lVT-----------~taVyHWsi~~~s~P~kvF-dR~~~L~~~QIInY~~d~~----  161 (494)
T 1bpo_A          102 HTMTDDVTFWKWISL----NTVALVT-----------DNAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAK----  161 (494)
T ss_dssp             EECSSCCCEEEEEET----TEEEEEC-----------SSEEEEEESSSSCCCEEEE-ECCGGGTTCEEEEEEECTT----
T ss_pred             eecCCCceEEEecCC----CeEEEEc-----------CCeeEEecccCCCCchhhe-ecchhcccceEEEEEECCC----
Confidence            344455555566554    4677765           7799999998765455444 4452    35777788888    


Q ss_pred             CCeEEEEc---CCccE-----EEecCCCccc--CccE-EEEEEcCCCC-----eEEEEec---CCeEEEEEcccc---ce
Q 020107           82 GPFLAQAD---ADGGL-----LRDITGEKIS--SSMC-LCLEWNPSAT-----SITVGLS---DGSVSIVSVVES---QL  139 (331)
Q Consensus        82 ~~~l~~~~---~dg~i-----iw~~~~~~~~--~~~v-~~~~~~~~~~-----~l~~~~~---dg~i~i~d~~~~---~~  139 (331)
                      .++++..+   .++.+     ++..+.....  .+.. .-..+-.+|+     .++.+..   .+.+++.++...   ..
T Consensus       162 ~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~  241 (494)
T 1bpo_A          162 QKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ  241 (494)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC
T ss_pred             CCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC
Confidence            77776443   35555     7777765431  1111 1112222221     2333333   378999988543   10


Q ss_pred             e----eeee-eec--ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107          140 E----VLQQ-WKA--HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL  212 (331)
Q Consensus       140 ~----~~~~-~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  212 (331)
                      .    .+.. +..  ..+-.-++..++ .-..++.-+.-|.|++||+.++.++..-+.   ....|..-+... ...=++
T Consensus       242 ~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrI---s~~~iF~t~~~~-~~~Gi~  316 (494)
T 1bpo_A          242 PFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHE-ATAGII  316 (494)
T ss_dssp             CCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEET-TTTEEE
T ss_pred             CccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecc---cCCceEEecccC-CCCcEE
Confidence            0    0110 111  112233677776 667888888999999999999988776665   566666666555 333444


Q ss_pred             EEecCCeEEEEEecC
Q 020107          213 TGSYDEYLRVWDVRS  227 (331)
Q Consensus       213 ~~~~d~~i~iwd~~~  227 (331)
                      .....|.|.--.+..
T Consensus       317 ~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          317 GVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEETTCEEEEEEECT
T ss_pred             EEccCceEEEEEEcc
Confidence            445778777776665

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=90.79  E-value=10  Score=35.05  Aligned_cols=164  Identities=13%  Similarity=0.120  Sum_probs=86.1

Q ss_pred             CccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeeeec----ccceeEEEeeCCCCCcEEEEEcCCCe----EE
Q 020107          105 SSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQWKA----HEFELWATSFDVHQPHMVYTGSDDCK----FS  175 (331)
Q Consensus       105 ~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~----i~  175 (331)
                      ...|.+|+++|.. ..++++...+.|...+-....++++.....    ....+.+++++|.+.+.++.+.....    -.
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            4678999999964 557777777776655533334433322111    12468999999855555555542211    23


Q ss_pred             EEEcc-CCCceeeeecc-c-----CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee-----ecCCce
Q 020107          176 GWDIR-ESPFKLAFQNS-K-----IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV-----CLGGGV  243 (331)
Q Consensus       176 i~d~~-~~~~~~~~~~~-~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v  243 (331)
                      ||-.. .++.-..+... .     .....+..++++|.++..++.+...+.  ||-.....+.......     .....+
T Consensus        94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~~~  171 (789)
T 1sqj_A           94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGIGY  171 (789)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTTCE
T ss_pred             EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCCCe
Confidence            44333 23221111110 0     011135678888855667777764443  3434333333332111     112457


Q ss_pred             EEEEECCCCCCeEEEEEec-CcEEEEEEcC
Q 020107          244 WRIKHHPFIPGLVLAACMH-NGFAVVKVGG  272 (331)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  272 (331)
                      ..+.++|..+..++++..+ ..  ++.-.+
T Consensus       172 ~~i~~~p~~~~~~~~~~~~~~~--v~~S~D  199 (789)
T 1sqj_A          172 TSVIFDPERNGTIYASATAPQG--MYVTHD  199 (789)
T ss_dssp             EEEEECTTSTTCEEEEESSTTC--EEEESS
T ss_pred             EEEEECCCCCCEEEEEEcCCCe--EEEEcC
Confidence            8899998765666666554 44  555544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=88.45  E-value=8.3  Score=30.76  Aligned_cols=138  Identities=12%  Similarity=0.003  Sum_probs=70.6

Q ss_pred             EEcCCCCeEEEEecC--------------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc----CCCe
Q 020107          112 EWNPSATSITVGLSD--------------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS----DDCK  173 (331)
Q Consensus       112 ~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~  173 (331)
                      -++++++.|+-....              ..|+..++...+...+   ...  .  ...|++ .++.|+-..    ....
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l---~~~--~--~~~~s~-~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVL---DPD--P--CIYASL-IGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEE---ECS--C--EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEe---ecC--C--ccEEEE-eCCEEEEEeecCCCCce
Confidence            456788887766542              4677777776543222   211  1  225566 445555443    3456


Q ss_pred             EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC
Q 020107          174 FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI  252 (331)
Q Consensus       174 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  252 (331)
                      |...++.... ...+..   +..    ..++| ++..|+-.+. ...|..-++....  ... +.  .+... ..+.|++
T Consensus       131 Iy~~~~dGs~-~~~lt~---~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~--~~~-l~--~~~~~-~~~~P~g  195 (302)
T 3s25_A          131 LYRIRIDGEE-KKKIKN---HYL----FTCNT-SDRYFYYNNPKNGQLYRYDTASQS--EAL-FY--DCNCY-KPVVLDD  195 (302)
T ss_dssp             EEEEETTSCC-CEEEES---SCC----CCSEE-ETTEEEEECTTTCCEEEEETTTTE--EEE-EE--CSCEE-EEEEEET
T ss_pred             EEEEECCCCC-eEEEeC---CCc----eEeeE-ECCEEEEEeCCCceEEEEECCCCC--EEE-Ee--CCCcc-ceeeecC
Confidence            6666666433 333433   222    34566 5666665544 5677777766532  122 11  22222 2355877


Q ss_pred             CCeEEEEEecCcEEEEEEcCc
Q 020107          253 PGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~  273 (331)
                       +.++-+...++.+++.++..
T Consensus       196 -~~iy~t~~~~~~~I~~~~ld  215 (302)
T 3s25_A          196 -TNVYYMDVNRDNAIVHVNIN  215 (302)
T ss_dssp             -TEEEEEEGGGTTEEEEECSS
T ss_pred             -CEEEEEEcCCCcEEEEEECC
Confidence             44444443333456666554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=87.72  E-value=10  Score=30.88  Aligned_cols=140  Identities=14%  Similarity=0.127  Sum_probs=69.9

Q ss_pred             CCeEEEEcCCccEEEecCCCcccCccEEEEEE--cCCCCeEEEE--ecCCeEEEEEccccceeeeeeeec--ccceeEEE
Q 020107           82 GPFLAQADADGGLLRDITGEKISSSMCLCLEW--NPSATSITVG--LSDGSVSIVSVVESQLEVLQQWKA--HEFELWAT  155 (331)
Q Consensus        82 ~~~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~--~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~--~~~~v~~~  155 (331)
                      +.+.|.-..+|.++|......  ..++....-  .+.+..++.+  +.||.|..++..++..+.......  ...++.. 
T Consensus        20 G~l~Ald~~tG~~~W~~~~~~--~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-   96 (339)
T 2be1_A           20 GGLHAVDRRNGHIIWSIEPEN--FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-   96 (339)
T ss_dssp             SCEEEEETTTTEEEEEECGGG--SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-
T ss_pred             CeEEEEECCCCcEEEEecCCc--cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecccccc-
Confidence            334444444555588887651  111111110  0122234444  579999999988774321111110  1111211 


Q ss_pred             eeCC--------CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC----cceEEEEEe---c-CCCCEEEEEecCCe
Q 020107          156 SFDV--------HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK----MGVCCIASI---P-SDSNTLLTGSYDEY  219 (331)
Q Consensus       156 ~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~v~~~~~~---~-~~~~~l~~~~~d~~  219 (331)
                      .=.|        ..+..+++|+.+|.+.-.|+++++.+..+.......    ....|....   . ..+..++.+..+..
T Consensus        97 ~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~  176 (339)
T 2be1_A           97 KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFE  176 (339)
T ss_dssp             ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEE
T ss_pred             CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEE
Confidence            0000        034678999999999999999998877776511100    001111110   0 12356777777777


Q ss_pred             EEEEE
Q 020107          220 LRVWD  224 (331)
Q Consensus       220 i~iwd  224 (331)
                      +.+.+
T Consensus       177 v~~~~  181 (339)
T 2be1_A          177 LGIHS  181 (339)
T ss_dssp             CEECC
T ss_pred             EEEEC
Confidence            77766

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.62  E-value=11  Score=32.99  Aligned_cols=71  Identities=13%  Similarity=0.126  Sum_probs=50.8

Q ss_pred             EEEEEcCCCCeEEEEec-CCeEEEEEcccc------ce-----eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107          109 LCLEWNPSATSITVGLS-DGSVSIVSVVES------QL-----EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG  176 (331)
Q Consensus       109 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~------~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  176 (331)
                      ..+..+|||+++++++. +.++.++|.+.-      +.     ....... -.......+|.+ +++...+.--|..|..
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceEEE
Confidence            46788999999887776 899999999851      11     0111222 233456889998 6777777779999999


Q ss_pred             EEccC
Q 020107          177 WDIRE  181 (331)
Q Consensus       177 ~d~~~  181 (331)
                      |++..
T Consensus       404 Wni~~  408 (638)
T 3sbq_A          404 WNMEE  408 (638)
T ss_dssp             EEHHH
T ss_pred             EeccH
Confidence            99975

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.48  E-value=13  Score=31.82  Aligned_cols=109  Identities=9%  Similarity=0.021  Sum_probs=57.1

Q ss_pred             cEEEEEEcCCCC-eEEEEecCCeEEEEEccccc-eeeeeeee---------cccceeEEEeeCCC---CCcEEEEEcC--
Q 020107          107 MCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQ-LEVLQQWK---------AHEFELWATSFDVH---QPHMVYTGSD--  170 (331)
Q Consensus       107 ~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~---------~~~~~v~~~~~~~~---~~~~l~~~~~--  170 (331)
                      ....|+|.|++. .|+++...|.|++++..... ...+..+.         ........++++|+   ++.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            346788888885 56666778888888654221 11122111         11346788999983   2334333221  


Q ss_pred             C----------CeEEEEEccCC--------Cceeeeecc-cCCCcceEEEEEecCCCCEEEEEec
Q 020107          171 D----------CKFSGWDIRES--------PFKLAFQNS-KIHKMGVCCIASIPSDSNTLLTGSY  216 (331)
Q Consensus       171 d----------g~i~i~d~~~~--------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~  216 (331)
                      +          ..|.-|.+...        .....+... .........|.|.| ++.+.++.+.
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCC
Confidence            1          13444555421        011122211 11223468899999 8877766554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.60  E-value=3.6  Score=33.48  Aligned_cols=109  Identities=8%  Similarity=0.048  Sum_probs=62.3

Q ss_pred             CeEEEEecCCeEEEEEccccceeeeeeeecc-cceeEEEeeC--CCCCcEEEEE-cCCCeEEEEEccCCCceeeeeccc-
Q 020107          118 TSITVGLSDGSVSIVSVVESQLEVLQQWKAH-EFELWATSFD--VHQPHMVYTG-SDDCKFSGWDIRESPFKLAFQNSK-  192 (331)
Q Consensus       118 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-  192 (331)
                      ..+++++.||.|.-+|.++++.  .-.++.. ..++....-.  +.++..++.. +.||.|..+|..++.....+.... 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~--~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHI--IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEE--EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcE--EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            4688899999999999988864  3333322 1122221111  1122344443 689999999988775433333200 


Q ss_pred             CCCcceEEEEEec--------CCCCEEEEEecCCeEEEEEecCCC
Q 020107          193 IHKMGVCCIASIP--------SDSNTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       193 ~~~~~v~~~~~~~--------~~~~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      ....++.. .-.|        ..+..+++|+.++.+.-.|+++++
T Consensus        89 v~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           89 VSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             HTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred             eecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence            01122221 1000        034578999999999999999873

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.40  E-value=17  Score=34.33  Aligned_cols=38  Identities=13%  Similarity=0.060  Sum_probs=30.1

Q ss_pred             eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee
Q 020107          151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ  189 (331)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  189 (331)
                      .+.+++..+ +..++++-+.|+++|+|++.++++.....
T Consensus       237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            455666665 66789999999999999999998766543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.68  E-value=29  Score=32.85  Aligned_cols=34  Identities=6%  Similarity=0.088  Sum_probs=29.2

Q ss_pred             ccEEEEEEcCCCCeEEEEecCCeEEEEEccccce
Q 020107          106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL  139 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  139 (331)
                      ..+.++...++..++++-+.|+++|+|++.++++
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence            3567777888888999999999999999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 3e-09
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 110 CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS 169
            + + P+  +   G  D +  +  +   Q  +          + + SF      ++  G 
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG-RLLLAGY 289

Query: 170 DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD 224
           DD   + WD  ++           H   V C+     D   + TGS+D +L++W+
Sbjct: 290 DDFNCNVWDALKADRAGVLAG---HDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 28/146 (19%), Positives = 45/146 (30%), Gaps = 9/146 (6%)

Query: 123 GLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES 182
           G  D S  +  V E      Q +  HE ++ A  F     +   TGSDD          +
Sbjct: 202 GACDASAKLWDVREGMC--RQTFTGHESDINAICFF-PNGNAFATGSDDATCR-LFDLRA 257

Query: 183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242
             +L   +      G+  ++        LL G  D    VWD     +            
Sbjct: 258 DQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRA--GVLAGHDNR 314

Query: 243 VWRIKHHPFIPGLVLAACMHNGFAVV 268
           V  +       G+ +A    + F  +
Sbjct: 315 VSCLGVTD--DGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 16/122 (13%), Positives = 31/122 (25%), Gaps = 16/122 (13%)

Query: 66  TAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSSMC---------LCLEWNPS 116
            + I  I + P     G   A    D                            + ++ S
Sbjct: 226 ESDINAICFFP----NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281

Query: 117 ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG 176
              +  G  D + ++   +++          H+  +            V TGS D     
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADR--AGVLAGHDNRVSCLGVT-DDGMAVATGSWDSFLKI 338

Query: 177 WD 178
           W+
Sbjct: 339 WN 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 13/172 (7%)

Query: 102 KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ 161
            +                +  G  D S+ +  V       +     H+            
Sbjct: 172 TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV--ETGNCIHTLTGHQSLTSGMELK--- 226

Query: 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLR 221
            +++ +G+ D     WDI+        Q    H+  V C+       N ++T S D  ++
Sbjct: 227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVK 283

Query: 222 VWDVRS---ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270
           +WD+++   I   V   S   GG VWRI+       LV A    NG    K+
Sbjct: 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASN--TKLVCAVGSRNGTEETKL 333

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 13/136 (9%)

Query: 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEV----------LQQWKAHEFELWA 154
                 + +     S+  G  D SV + ++  +  +              +  H+  + +
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 155 TSFDVHQPHMVYTGSDDCKFSGWDIR--ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL 212
            +        + +GS D     WD +       L    + +  + V   +S+  + N   
Sbjct: 314 VATT-QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

Query: 213 TGSYDEYLRVWDVRSI 228
           TGS D   R+W  + I
Sbjct: 373 TGSGDCKARIWKYKKI 388

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 7/121 (5%)

Query: 104 SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH 163
            ++     +       +  G  D ++ +     S    L     H+  +    F      
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWD--VSTGMCLMTLVGHDNWVRGVLFHSGGKF 261

Query: 164 MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVW 223
           ++ + +DD     WD +    K   +    H+  V  +      +  ++TGS D+ ++VW
Sbjct: 262 IL-SCADDKTLRVWDYKN---KRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVW 316

Query: 224 D 224
           +
Sbjct: 317 E 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 3e-05
 Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 29/179 (16%)

Query: 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH- 163
                 +  N   T I    +D +V +  V  +  E   + + H   +   S+     + 
Sbjct: 143 REWVRMVRPNQDGTLIASCSNDQTVRVWVV--ATKECKAELREHRHVVECISWAPESSYS 200

Query: 164 ------------------MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP 205
                              + +GS D     WD+      +       H   V  +    
Sbjct: 201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHS 257

Query: 206 SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG 264
                +L+ + D+ LRVWD ++  + + +T       V  +  H       +     + 
Sbjct: 258 -GGKFILSCADDKTLRVWDYKN-KRCM-KTLNAHEHFVTSLDFHKT--APYVVTGSVDQ 311

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 3/159 (1%)

Query: 110 CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS 169
           C  WN   T I +  ++  V I     ++   + + K H  ++    +     + + T  
Sbjct: 12  CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PDSNRIVTCG 70

Query: 170 DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS 229
            D     W ++   +K       +             +      GS    + +      +
Sbjct: 71  TDRNAYVWTLKGRTWK--PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVV 268
                  +        +        ++LAA   +    +
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 167

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 9/133 (6%)

Query: 107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS-FDVHQPHMV 165
               L            +++ S  +V+       VL  + +   +L      DV +    
Sbjct: 235 AVATLASETLPLLAVTFITESS--LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 292

Query: 166 YTGSDDCKFSGWDIRESPFKLAFQNSK---IHKMGVCCIASIP---SDSNTLLTGSYDEY 219
              +   +F   D + S    A   +    +HK  V  I+ +    +  +   T   D  
Sbjct: 293 RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG 352

Query: 220 LRVWDVRSISKPV 232
           + +WDVRS+   +
Sbjct: 353 MSIWDVRSLESAL 365

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIA 202
               + +      + +  +  +V TGS D     + ++     +   N+  HK GV  + 
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA--HKDGVNNLL 265

Query: 203 SIPSDSNTLLTGSYDEYLRVWDV 225
                 +TL++   D  ++ W+V
Sbjct: 266 W--ETPSTLVSSGADACIKRWNV 286

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 3e-05
 Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 2/83 (2%)

Query: 143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIA 202
                      A          + TGS D     W++ +                V  + 
Sbjct: 217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 276

Query: 203 SIPSDSNTLLTGSYDEYLRVWDV 225
               +  T+++   D  ++ W+V
Sbjct: 277 W--LNETTIVSAGQDSNIKFWNV 297

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 6e-05
 Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 1/83 (1%)

Query: 143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIA 202
            +      +    +          T   D     WD+  S     +   K  ++G   + 
Sbjct: 244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK-QQLGNQQVG 302

Query: 203 SIPSDSNTLLTGSYDEYLRVWDV 225
            + + +  +++ S D  L  +++
Sbjct: 303 VVATGNGRIISLSLDGTLNFYEL 325

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 7e-05
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 14/124 (11%)

Query: 107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY 166
                        +  G SD ++ +  +     E     +  E               + 
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRLWDI-----ECGACLRVLEGHEELVRCIRFDNKRIV 232

Query: 167 TGSDDCKFSGWDIRESPFKLAFQNSKI------HKMGVCCIASIPSDSNTLLTGSYDEYL 220
           +G+ D K   WD+  +    A   +        H   V  +     D   +++ S+D+ +
Sbjct: 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTI 289

Query: 221 RVWD 224
            +WD
Sbjct: 290 LIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 24/189 (12%), Positives = 52/189 (27%), Gaps = 32/189 (16%)

Query: 142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCI 201
           +   +       A +        + + S D     W+     F       K        I
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK------RGI 181

Query: 202 ASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM 261
           A +      +++GS D  +R+WD+   +       + +  G   +          + +  
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGAC------LRVLEGHEELVRCIRFDNKRIVSGA 235

Query: 262 HNGFAVV--------KVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS 313
           ++G   V                 L T  +H    +   +               + + S
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-----------EFQIVSSS 284

Query: 314 FYDRLLRIW 322
            +D  + IW
Sbjct: 285 -HDDTILIW 292

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 29/210 (13%), Positives = 59/210 (28%), Gaps = 31/210 (14%)

Query: 146 KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK---IHKMGVCCIA 202
           KAH+ ++++ S          + S D     WD +    +     S    +HK G+  + 
Sbjct: 11  KAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 203 SIPS------DSNTLLTGSYDEYLRVWDVRS--------ISKPVNETSVCLGGGVWRIKH 248
            + +      +   + T S+   L  + +            K     S       W +K 
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 249 HP---FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRK 305
                 +    L A    G   +      A+   +   + S                +  
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 306 NS-------LVATCSFYDRLLRIWMPESDC 328
            S       L+AT    +  ++I    +  
Sbjct: 188 TSVDISERGLIATGF-NNGTVQISELSTLR 216

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 6/83 (7%)

Query: 143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIA 202
            Q   HE  + +  F       V +   D   + W           +        V    
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFV-STGKDNLLNAWRTPYGASIFQSK----ESSSVLSCD 313

Query: 203 SIPSDSNTLLTGSYDEYLRVWDV 225
               D   ++TGS D+   V++V
Sbjct: 314 ISV-DDKYIVTGSGDKKATVYEV 335

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 10/89 (11%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 139 LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV 198
           ++++Q  +A +  +        +  ++   S D   + +        +    S  +K  +
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLL-ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 199 CCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
            C   I +    +  G+    +   D+  
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILKVDLIG 88

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 2/75 (2%)

Query: 194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVN-ETSVCLGGGVWRIKHHPFI 252
            K  +  I  IP   + LL  S+D  L V+     +K V+   S+     +         
Sbjct: 10  PKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 253 PGLVLAACMHNGFAV 267
              +    +      
Sbjct: 69  DLQIYVGTVQGEILK 83

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 16/128 (12%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIA 202
                           +     +         +   IR        +    H   +  I 
Sbjct: 229 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 288

Query: 203 SIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH 262
           +     N L++GS +    ++++RS  K V+   +     +W +         ++AA   
Sbjct: 289 TFYVSDNILVSGS-ENQFNIYNLRS-GKLVHANILKDADQIWSVNFK---GKTLVAAVEK 343

Query: 263 NGFAVVKV 270
           +G + +++
Sbjct: 344 DGQSFLEI 351

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 6/82 (7%), Positives = 18/82 (21%), Gaps = 3/82 (3%)

Query: 143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIA 202
                                 + + S D     W++     +         +     I 
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290

Query: 203 SIPSDSNTLLTGSYDEYLRVWD 224
                   L++ S + ++   +
Sbjct: 291 W---TKQALVSISANGFINFVN 309

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.74
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.7
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.68
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.63
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.39
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.3
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.3
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.27
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.26
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.19
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.16
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.13
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.05
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.04
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.04
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.02
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.01
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.01
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.01
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.83
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.73
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.52
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.37
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.32
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.17
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.13
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.0
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.98
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.68
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.67
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.42
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.38
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.28
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.81
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.77
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.42
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.56
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.5
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	95.5
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.48
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.42
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.09
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.97
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.93
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.63
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.44
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	94.06
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.96
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.71
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.62
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.62
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.18
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.46
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	88.52
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.21
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	83.26
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.57

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-42  Score=288.35  Aligned_cols=275  Identities=15%  Similarity=0.159  Sum_probs=232.9

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--e-EEeEeeecCcEeEEEEcCCCCCCCC
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--L-ELLYRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      .+...+.+|+|+|.+   ++||+|+           ||.|+|||+......  + ......|...|.+++|+|+    ++
T Consensus        49 ~H~~~V~~v~fs~~g---~~latg~-----------dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d----g~  110 (337)
T d1gxra_          49 NHGEVVCAVTISNPT---RHVYTGG-----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD----GC  110 (337)
T ss_dssp             CCSSCCCEEEECSSS---SEEEEEC-----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT----SS
T ss_pred             CCCCcEEEEEECCCC---CEEEEEE-----------CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC----CC
Confidence            456778888888876   8999997           899999999765321  2 2233468889999999999    89


Q ss_pred             eEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE
Q 020107           84 FLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA  154 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~  154 (331)
                      +|++++.||.+ +|++.....        |...+.++.|+|++..+++++.|+.|++|++.+++.  ......|...+.+
T Consensus       111 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~--~~~~~~~~~~v~~  188 (337)
T d1gxra_         111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL--VRQFQGHTDGASC  188 (337)
T ss_dssp             EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEE
T ss_pred             EEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence            99999999999 999875432        567889999999999999999999999999998754  6677788999999


Q ss_pred             EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107          155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      ++|++ ++..+++++.|+.+++||+++++.+..+.    |...|.+++|+| ++++|++++.|+.|++||++.. .... 
T Consensus       189 l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~----~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~-  260 (337)
T d1gxra_         189 IDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKP-DKYQ-  260 (337)
T ss_dssp             EEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSS-CEEE-
T ss_pred             ccccc-cccccccccccccccccccccceeecccc----cccceEEEEEcc-cccccceecccccccccccccc-cccc-
Confidence            99998 78899999999999999999887655554    688999999999 9999999999999999999975 3333 


Q ss_pred             eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107          235 TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       235 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  314 (331)
                       ...|...|++++|+|++ ..+++++.++.+++|++..  ++.+..+ .|...|++++|+|++         ++|++++ 
T Consensus       261 -~~~~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~--~~~~~~~-~~~~~v~~~~~s~d~---------~~l~t~s-  325 (337)
T d1gxra_         261 -LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPY--GASIFQS-KESSSVLSCDISVDD---------KYIVTGS-  325 (337)
T ss_dssp             -ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT--CCEEEEE-ECSSCEEEEEECTTS---------CEEEEEE-
T ss_pred             -ccccccccceEEECCCC-CEEEEEeCCCeEEEEECCC--CCEEEEc-cCCCCEEEEEEeCCC---------CEEEEEe-
Confidence             37899999999999997 6777777888888998776  4556554 478899999999998         6999999 


Q ss_pred             CCCeEEEEcC
Q 020107          315 YDRLLRIWMP  324 (331)
Q Consensus       315 ~d~~i~iW~~  324 (331)
                      .||+|+|||+
T Consensus       326 ~D~~I~vWdl  335 (337)
T d1gxra_         326 GDKKATVYEV  335 (337)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.9e-42  Score=280.08  Aligned_cols=275  Identities=16%  Similarity=0.185  Sum_probs=227.3

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+.+..++++|.+   +.||.+.           ++.|.+|+++...  ....+.+|...|++++|+|+    +++|++|
T Consensus        17 r~~~~~~a~~~~g---~~l~~~~-----------~~~v~i~~~~~~~--~~~~~~~H~~~v~~~~~sp~----g~~latg   76 (311)
T d1nr0a1          17 RGTAVVLGNTPAG---DKIQYCN-----------GTSVYTVPVGSLT--DTEIYTEHSHQTTVAKTSPS----GYYCASG   76 (311)
T ss_dssp             TTCCCCCEECTTS---SEEEEEE-----------TTEEEEEETTCSS--CCEEECCCSSCEEEEEECTT----SSEEEEE
T ss_pred             CCCeEEEEEcCCC---CEEEEEe-----------CCEEEEEECCCCc--eeEEEcCCCCCEEEEEEeCC----CCeEecc
Confidence            3456678888877   7899887           7889999998775  44456889999999999999    9999999


Q ss_pred             cCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEec--CCeEEEEEccccceeeeeeeecccceeEEEee
Q 020107           89 DADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQQWKAHEFELWATSF  157 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  157 (331)
                      +.||.+ +|++.....        |...|.+++|+|++++|++++.  +..+++|++++++.  ...+.+|...|++++|
T Consensus        77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~--~~~l~~h~~~v~~v~~  154 (311)
T d1nr0a1          77 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS--NGNLTGQARAMNSVDF  154 (311)
T ss_dssp             ETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB--CBCCCCCSSCEEEEEE
T ss_pred             ccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccc--cccccccccccccccc
Confidence            999999 999987542        5789999999999999999886  45699999998754  6778889999999999


Q ss_pred             CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee---
Q 020107          158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE---  234 (331)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---  234 (331)
                      +|.....+++|+.|+.|++||+++++....+..   |...|+++.|+| ++++|++++.|+.|++||+++.. ....   
T Consensus       155 ~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~---~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~  229 (311)
T d1nr0a1         155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE---HTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGT-KTGVFED  229 (311)
T ss_dssp             CSSSSCEEEEEETTSCEEEEETTTBEEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCC-EEEECBC
T ss_pred             cccceeeeccccccccccccccccccccccccc---ccccccccccCc-ccccccccccccccccccccccc-ccccccc
Confidence            995555689999999999999998876666665   999999999999 99999999999999999998753 2221   


Q ss_pred             ---eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc---ceeeeeecCCCCcccccccCcE
Q 020107          235 ---TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS---LAYGADWQRGRSSLEGKRKNSL  308 (331)
Q Consensus       235 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~~~~~~~  308 (331)
                         ...+|.+.|++++|+|++ ..+++++.|+.+++|++..  ++++.++..|..   .+.++.|+  +         ..
T Consensus       230 ~~~~~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t--~~~~~~l~~~~~~~~~~~~~~~~--~---------~~  295 (311)
T d1nr0a1         230 DSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVAT--LKVEKTIPVGTRIEDQQLGIIWT--K---------QA  295 (311)
T ss_dssp             TTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT--TEEEEEEECCSSGGGCEEEEEEC--S---------SC
T ss_pred             cccccccccccccccccCCCC-CEEEEEeCCCeEEEEECCC--CcEEEEEECCCCccceEEEEEec--C---------CE
Confidence               124688999999999997 6777777788899999875  578888876543   34445554  4         47


Q ss_pred             EEEeecCCCeEEEEcCC
Q 020107          309 VATCSFYDRLLRIWMPE  325 (331)
Q Consensus       309 l~s~~~~d~~i~iW~~~  325 (331)
                      |++++ .||.|++||++
T Consensus       296 l~s~s-~dG~i~~wd~d  311 (311)
T d1nr0a1         296 LVSIS-ANGFINFVNPE  311 (311)
T ss_dssp             EEEEE-TTCCEEEEETT
T ss_pred             EEEEE-CCCEEEEEeCC
Confidence            88999 89999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.2e-42  Score=286.82  Aligned_cols=294  Identities=13%  Similarity=0.084  Sum_probs=232.3

Q ss_pred             eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107            4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      .+.++-.++.|++|+|.+   ++||+|+          .+|.|+||++..++......+++|.++|++++|+|+    ++
T Consensus         2 ~~~~~~~pIt~~~~s~dg---~~la~~~----------~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~----~~   64 (371)
T d1k8kc_           2 YHSFLVEPISCHAWNKDR---TQIAICP----------NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD----SN   64 (371)
T ss_dssp             EEESCSSCCCEEEECTTS---SEEEEEC----------SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT----TT
T ss_pred             cCCCCCCCeEEEEECCCC---CEEEEEe----------CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC----CC
Confidence            345566789999998877   8999998          799999999987653344556889999999999999    89


Q ss_pred             eEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee--eeeeeeccccee
Q 020107           84 FLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE--VLQQWKAHEFEL  152 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~v  152 (331)
                      +|++++.|+.+ +|++.+...        +...|.+++|+|+++.|++++.|+.|++|+++.....  .......|...|
T Consensus        65 ~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v  144 (371)
T d1k8kc_          65 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  144 (371)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             EEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccc
Confidence            99999999999 999876532        4678999999999999999999999999998875432  233445688899


Q ss_pred             EEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee---------------eeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107          153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL---------------AFQNSKIHKMGVCCIASIPSDSNTLLTGSYD  217 (331)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  217 (331)
                      .+++|+| ++.+|++|+.|+.|++||........               .+.....|...|.+++|+| ++++|++++.|
T Consensus       145 ~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d  222 (371)
T d1k8kc_         145 LSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHD  222 (371)
T ss_dssp             EEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETT
T ss_pred             ccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccC
Confidence            9999999 88999999999999999987543211               1111245888999999999 99999999999


Q ss_pred             CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE------------------
Q 020107          218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE------------------  279 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  279 (331)
                      +.|++||++.. +.+.. +..|..+|.+++|+|+  +.++++|.++.+.+|...........                  
T Consensus       223 ~~i~iwd~~~~-~~~~~-~~~~~~~v~s~~fs~d--~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (371)
T d1k8kc_         223 STVCLADADKK-MAVAT-LASETLPLLAVTFITE--SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR  298 (371)
T ss_dssp             TEEEEEEGGGT-TEEEE-EECSSCCEEEEEEEET--TEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHH
T ss_pred             CcceEEeeecc-cceee-eecccccceeeeecCC--CCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccce
Confidence            99999999985 44444 5788999999999998  67788888888777766442211000                  


Q ss_pred             ---------------------EeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          280 ---------------------TYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       280 ---------------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                                           ....|.+.|+++++.+...     .....|+|+| .||.|++||+++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~-----~~~~~~~T~g-~Dg~v~iW~~~~  360 (371)
T d1k8kc_         299 ERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK-----AKCSQFCTTG-MDGGMSIWDVRS  360 (371)
T ss_dssp             HHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT-----TSCSEEEEEE-TTSEEEEEEHHH
T ss_pred             eeEecccceeEEeccccccceecccccCCEEEEEEeCCCC-----cceEEEEEEc-CCCeEEEEeCCc
Confidence                                 0013888999999987652     1124689999 999999999865

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-40  Score=271.70  Aligned_cols=275  Identities=19%  Similarity=0.286  Sum_probs=237.4

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA   88 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   88 (331)
                      .+++.+|+|+|.+   ++||+|+          .||.|+|||+.+.+  ....+.+|...|.+++|+|+    +.+++++
T Consensus        17 ~~~I~~l~~sp~~---~~l~s~s----------~Dg~i~iWd~~~~~--~~~~~~~h~~~V~~~~~~~~----~~~~~~~   77 (317)
T d1vyhc1          17 RSPVTRVIFHPVF---SVMVSAS----------EDATIKVWDYETGD--FERTLKGHTDSVQDISFDHS----GKLLASC   77 (317)
T ss_dssp             SSCEEEEEECSSS---SEEEEEE----------SSSCEEEEETTTCC--CCEEECCCSSCEEEEEECTT----SSEEEEE
T ss_pred             CCCeEEEEEcCCC---CEEEEEe----------CCCeEEEEECCCCC--EEEEEeCCCCcEEEEeeecc----ccccccc
Confidence            3456777777765   8999998          79999999999876  34445789999999999999    8999999


Q ss_pred             cCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107           89 DADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ  161 (331)
Q Consensus        89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (331)
                      ..++.+ .|+......      +...+.++.|+|+++.+++++.|+.+++||+++++.  +..+.+|...+.+++|+| +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~  154 (317)
T d1vyhc1          78 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRMVRPNQ-D  154 (317)
T ss_dssp             ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECT-T
T ss_pred             ccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeeccccee--eeEEccCCCcceeeeccc-C
Confidence            999988 777665433      578899999999999999999999999999998754  777888999999999998 8


Q ss_pred             CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC-------------------CCCEEEEEecCCeEEE
Q 020107          162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS-------------------DSNTLLTGSYDEYLRV  222 (331)
Q Consensus       162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~l~~~~~d~~i~i  222 (331)
                      +.+|++++.|+.|++|++++++....+..   |...+.++.++|.                   .+.++++++.|+.|++
T Consensus       155 ~~~l~~~~~d~~v~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  231 (317)
T d1vyhc1         155 GTLIASCSNDQTVRVWVVATKECKAELRE---HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  231 (317)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             CCEEEEEeCCCeEEEEeeccceeeEEEec---CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence            89999999999999999999887777766   8899999999873                   2347999999999999


Q ss_pred             EEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccc
Q 020107          223 WDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEG  302 (331)
Q Consensus       223 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  302 (331)
                      ||++++ +++.. +..|...|.+++|+|++ .++++++.++.+++|++..  ++++.++.+|.+.|++++|+|++     
T Consensus       232 ~~~~~~-~~~~~-~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~--~~~~~~~~~h~~~V~~~~~s~~~-----  301 (317)
T d1vyhc1         232 WDVSTG-MCLMT-LVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKN--KRCMKTLNAHEHFVTSLDFHKTA-----  301 (317)
T ss_dssp             EETTTT-EEEEE-EECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTT--SCCCEEEECCSSCEEEEEECSSS-----
T ss_pred             EECCCC-cEEEE-EeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCC-----
Confidence            999985 44544 57899999999999997 6777777888899998876  57889999999999999999998     


Q ss_pred             cccCcEEEEeecCCCeEEEEc
Q 020107          303 KRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       303 ~~~~~~l~s~~~~d~~i~iW~  323 (331)
                          ++|+|++ .||+|+|||
T Consensus       302 ----~~l~s~s-~Dg~i~iWd  317 (317)
T d1vyhc1         302 ----PYVVTGS-VDQTVKVWE  317 (317)
T ss_dssp             ----SCEEEEE-TTSEEEEEC
T ss_pred             ----CEEEEEe-CCCeEEEeC
Confidence                6999999 999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-39  Score=274.46  Aligned_cols=288  Identities=19%  Similarity=0.221  Sum_probs=228.4

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEE-----------------eEeeecCcEe
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL-----------------LYRMDTAGIF   70 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~-----------------~~~~~~~~v~   70 (331)
                      +.+.+.||+|+|++   ++||+|+           |+.|+||++.+.. .+..                 ....|...|+
T Consensus        61 H~~~V~~l~fs~dg---~~lasg~-----------d~~i~iW~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  125 (388)
T d1erja_          61 HTSVVCCVKFSNDG---EYLATGC-----------NKTTQVYRVSDGS-LVARLSDDSAANKDPENLNTSSSPSSDLYIR  125 (388)
T ss_dssp             CSSCCCEEEECTTS---SEEEEEC-----------BSCEEEEETTTCC-EEEEECC-----------------CCCCBEE
T ss_pred             CCCcEEEEEECCCC---CEEEEEe-----------CCeEEEEEecccc-eEeeecccccccccccccccccccCCCCCEE
Confidence            55778899998876   8999997           8999999998764 1111                 1234667799


Q ss_pred             EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeee
Q 020107           71 DIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ  143 (331)
Q Consensus        71 ~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  143 (331)
                      +++|+|+    +++|++|+.||.+ +|+....+.      |...|.++.|++++..+++++.++.+++||.++...  ..
T Consensus       126 ~l~~s~~----~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~  199 (388)
T d1erja_         126 SVCFSPD----GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SL  199 (388)
T ss_dssp             EEEECTT----SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EE
T ss_pred             EEEECCC----CCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccc--cc
Confidence            9999999    9999999999999 999887654      678999999999999999999999999999987643  44


Q ss_pred             eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec----ccCCCcceEEEEEecCCCCEEEEEecCCe
Q 020107          144 QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN----SKIHKMGVCCIASIPSDSNTLLTGSYDEY  219 (331)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  219 (331)
                      ....+. ...++.+.+.++++|++++.|+.|++||.+++.....+..    ..+|...|.+++|+| ++.+|++++.|+.
T Consensus       200 ~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~  277 (388)
T d1erja_         200 TLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRS  277 (388)
T ss_dssp             EEECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred             cccccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCCc
Confidence            444444 4556667766889999999999999999998876554432    234889999999999 9999999999999


Q ss_pred             EEEEEecCCCCC----------ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCccee
Q 020107          220 LRVWDVRSISKP----------VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAY  289 (331)
Q Consensus       220 i~iwd~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  289 (331)
                      |++||+++....          .......|...|.+++|+|++ .++++++.++.+++|++..  ++++.++.+|.+.|+
T Consensus       278 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~--~~~~~~l~~H~~~V~  354 (388)
T d1erja_         278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKS--GNPLLMLQGHRNSVI  354 (388)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEE
T ss_pred             EEEEeccCCccccccccccccceeeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCC--CcEEEEEeCCCCCEE
Confidence            999999865321          112245688899999999996 6777777888899999876  688999999999999


Q ss_pred             eeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      ++++++...   .+|++.+||||+ .||+|+||+++
T Consensus       355 ~~~~~~~~~---~spd~~~l~s~s-~Dg~I~iW~~~  386 (388)
T d1erja_         355 SVAVANGSS---LGPEYNVFATGS-GDCKARIWKYK  386 (388)
T ss_dssp             EEEECSSCT---TCTTCEEEEEEE-TTSEEEEEEEE
T ss_pred             EEEEecCcc---cCCCCCEEEEEe-CCCEEEEEeee
Confidence            998655321   234448999999 99999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.2e-38  Score=260.15  Aligned_cols=278  Identities=17%  Similarity=0.243  Sum_probs=225.4

Q ss_pred             eeecCc---ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCC
Q 020107            6 CELDGN---ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAG   82 (331)
Q Consensus         6 ~~~~~~---~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   82 (331)
                      .+|.||   +.+|+|+|.+   ++||+|+          .||.|+|||+.+.+  .......|...|.+++|+|+    +
T Consensus        49 ~tL~GH~~~I~~l~~s~~~---~~l~sgs----------~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~v~~~~~----~  109 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDS---RLLVSAS----------QDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAPS----G  109 (340)
T ss_dssp             EEECCCSSCEEEEEECTTS---SEEEEEE----------TTTEEEEEETTTTE--EEEEEECSCSCEEEEEECTT----S
T ss_pred             EEECCCCCCEEEEEECCCC---CEEEEEE----------CCCceeeeecccce--eEEEEecccccEEeeEeecc----c
Confidence            345554   6666666655   8999999          79999999999875  44445789999999999999    8


Q ss_pred             CeEEEEcCCccE-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccce
Q 020107           83 PFLAQADADGGL-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFE  151 (331)
Q Consensus        83 ~~l~~~~~dg~i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  151 (331)
                      .++++++.|+.+ +|+......          +..... ......+..+.....+.....+.......  ......+...
T Consensus       110 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  186 (340)
T d1tbga_         110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS-CCRFLDDNQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGD  186 (340)
T ss_dssp             SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEE-EEEEEETTEEEEEETTTEEEEEETTTTEE--EEEEECCSSC
T ss_pred             eeeeeecccceeecccccccccccccceeccccccccc-ccccccccccccccccccccccccccccc--ccccccccee
Confidence            999999999999 888765433          222222 33333456677888889999988876543  4445566778


Q ss_pred             eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107          152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP  231 (331)
Q Consensus       152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  231 (331)
                      +....+.+ ...++++++.|+.|++||+++++....+..   |...|++++|+| ++.+|++|+.|+.|++||++.....
T Consensus       187 ~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~---h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~  261 (340)
T d1tbga_         187 VMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTG---HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             EEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             Eeeecccc-ccceeEEeecCceEEEEECCCCcEEEEEeC---CCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccc
Confidence            88999987 778999999999999999999887777766   999999999999 9999999999999999999985332


Q ss_pred             ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107          232 VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVAT  311 (331)
Q Consensus       232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  311 (331)
                      .......+...|.+++|+|++ .++++++.++.+++|++..  ++.+.++.+|.+.|++++|+|++         .+|+|
T Consensus       262 ~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~--~~~~~~~~~H~~~V~~l~~s~d~---------~~l~s  329 (340)
T d1tbga_         262 MTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALK--ADRAGVLAGHDNRVSCLGVTDDG---------MAVAT  329 (340)
T ss_dssp             EEECCTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTS---------SCEEE
T ss_pred             cccccccccCceEEEEECCCC-CEEEEEECCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEeCCC---------CEEEE
Confidence            222224566789999999997 6777777888899999876  68899999999999999999998         69999


Q ss_pred             eecCCCeEEEEc
Q 020107          312 CSFYDRLLRIWM  323 (331)
Q Consensus       312 ~~~~d~~i~iW~  323 (331)
                      || .||.|+|||
T Consensus       330 ~s-~Dg~v~iWd  340 (340)
T d1tbga_         330 GS-WDSFLKIWN  340 (340)
T ss_dssp             EE-TTSCEEEEC
T ss_pred             Ec-cCCEEEEeC
Confidence            99 999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-37  Score=254.93  Aligned_cols=239  Identities=15%  Similarity=0.244  Sum_probs=207.5

Q ss_pred             eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107           64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEWNPSATSITVGLSDGSVSI  131 (331)
Q Consensus        64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i  131 (331)
                      .|...|.+++|+|+    +++|++|+ ||.+ +|++.....           |...|.+++|+|++++|++|+.||.|++
T Consensus        49 ~H~~~V~~v~fs~~----g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          49 NHGEVVCAVTISNP----TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECSS----SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             CCCCcEEEEEECCC----CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence            68899999999999    99999998 7888 999876432           5678999999999999999999999999


Q ss_pred             EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107          132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      ||+..........+..|...+..++|+| ++.++++++.|+.|++||+++++.......   |...|.+++|++ ++..+
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~---~~~~v~~l~~s~-~~~~~  198 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCIDISN-DGTKL  198 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECT-TSSEE
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc---cccccccccccc-ccccc
Confidence            9998766556777888999999999998 789999999999999999998876665555   899999999999 99999


Q ss_pred             EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeee
Q 020107          212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGA  291 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  291 (331)
                      ++++.|+.|++||+++. +.+..  ..+...|.+++|+|++ ..+++++.++.+++|++...  + ......|...|+++
T Consensus       199 ~~~~~d~~v~i~d~~~~-~~~~~--~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~--~-~~~~~~~~~~i~~v  271 (337)
T d1gxra_         199 WTGGLDNTVRSWDLREG-RQLQQ--HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKP--D-KYQLHLHESCVLSL  271 (337)
T ss_dssp             EEEETTSEEEEEETTTT-EEEEE--EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSS--C-EEEECCCSSCEEEE
T ss_pred             ccccccccccccccccc-eeecc--cccccceEEEEEcccc-cccceecccccccccccccc--c-cccccccccccceE
Confidence            99999999999999985 55554  6789999999999987 67777888888999988763  3 34566899999999


Q ss_pred             eecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +|+|++         ++|++++ .||.|++||+.++..
T Consensus       272 ~~s~~g---------~~l~s~s-~Dg~i~iwd~~~~~~  299 (337)
T d1gxra_         272 KFAYCG---------KWFVSTG-KDNLLNAWRTPYGAS  299 (337)
T ss_dssp             EECTTS---------SEEEEEE-TTSEEEEEETTTCCE
T ss_pred             EECCCC---------CEEEEEe-CCCeEEEEECCCCCE
Confidence            999998         6999999 999999999988753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.8e-37  Score=248.02  Aligned_cols=278  Identities=13%  Similarity=0.119  Sum_probs=210.6

Q ss_pred             eeecCc---ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCC
Q 020107            6 CELDGN---ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAG   82 (331)
Q Consensus         6 ~~~~~~---~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   82 (331)
                      ..+.||   +.+|+|+|.+   ++||+|+          .||.|++||+.++. ....+...|...|++++|+|+    +
T Consensus         6 ~~~~GH~~~V~~l~~s~dg---~~l~s~s----------~Dg~v~vWd~~~~~-~~~~~~~~h~~~v~~v~~~~~----g   67 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADG---KTLFSAD----------AEGHINSWDISTGI-SNRVFPDVHATMITGIKTTSK----G   67 (299)
T ss_dssp             EEECCCSSCEEEEEECTTS---SEEEEEE----------TTSCEEEEETTTCC-EEECSSCSCSSCEEEEEECTT----S
T ss_pred             eEcCCCCCCcEEEEECCCC---CEEEEEc----------CCCeEEEEECCCCc-EEEEEcCCCCCcEEEEEeecc----c
Confidence            345555   5566666554   8999998          79999999998875 455555678999999999999    7


Q ss_pred             CeEEEEcCCccE-EEecCCCcc---------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccccee
Q 020107           83 PFLAQADADGGL-LRDITGEKI---------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFEL  152 (331)
Q Consensus        83 ~~l~~~~~dg~i-iw~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v  152 (331)
                      +++ +++.|+.+ +|+......         +...+.+++|+++++.+++++ ++.+.+|+....    ....  ....+
T Consensus        68 ~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~----~~~~--~~~~~  139 (299)
T d1nr0a2          68 DLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL----TEVP--ISYNS  139 (299)
T ss_dssp             CEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE----EEEE--CSSCE
T ss_pred             eee-cccceeeEEEeccCCccccccccccccccccccccccccccccccccc-cccccccccccc----cccc--ccccc
Confidence            654 55567777 998765432         356788999999998776654 578999996532    2222  23457


Q ss_pred             EEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCc
Q 020107          153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPV  232 (331)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  232 (331)
                      .+++|+| +++++++++.|+.|++||+++++......  ..|...|++++|+| ++.+|++++.|+.|++||+.+.....
T Consensus       140 ~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         140 SCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT--IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             EEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE--EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             ccccccc-ccccccccccccccccccccccccccccc--cccccccccccccc-cccccccccccccccccccccccccc
Confidence            8899998 88999999999999999999876433222  23899999999999 99999999999999999998753221


Q ss_pred             e-eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC-CcceeeeeecCCCCcccccccCcEEE
Q 020107          233 N-ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH-GSLAYGADWQRGRSSLEGKRKNSLVA  310 (331)
Q Consensus       233 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~  310 (331)
                      . ..+..|..+|++++|+|++ .++++++.++.+++|++.............| ...+..+.|.++          ++|+
T Consensus       216 ~~~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~l~  284 (299)
T d1nr0a2         216 HTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE----------TTIV  284 (299)
T ss_dssp             CCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET----------TEEE
T ss_pred             ccccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCC----------CEEE
Confidence            1 1235688999999999997 6777777889999999887544444444444 456666766544          5899


Q ss_pred             EeecCCCeEEEEcCC
Q 020107          311 TCSFYDRLLRIWMPE  325 (331)
Q Consensus       311 s~~~~d~~i~iW~~~  325 (331)
                      +++ .|++|++||+.
T Consensus       285 s~s-~D~~i~iWdl~  298 (299)
T d1nr0a2         285 SAG-QDSNIKFWNVP  298 (299)
T ss_dssp             EEE-TTSCEEEEECC
T ss_pred             EEe-CCCEEEEEecc
Confidence            999 99999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.8e-37  Score=251.12  Aligned_cols=241  Identities=11%  Similarity=0.094  Sum_probs=201.2

Q ss_pred             ecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc
Q 020107           65 DTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ  138 (331)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  138 (331)
                      +.+.+..++++|+    ++.|+.++.+..++|++.+...      |...|++++|+|++++|++|+.||+|++||+.+++
T Consensus        16 ~r~~~~~~a~~~~----g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          16 ARGTAVVLGNTPA----GDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             CTTCCCCCEECTT----SSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             CCCCeEEEEEcCC----CCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence            3455678899999    8899988765544999987543      68899999999999999999999999999999876


Q ss_pred             eeeeeeeecccceeEEEeeCCCCCcEEEEEcC--CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC-EEEEEe
Q 020107          139 LEVLQQWKAHEFELWATSFDVHQPHMVYTGSD--DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN-TLLTGS  215 (331)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~  215 (331)
                      ......+..|..+|.+++|+| +++++++++.  +..+++|++++++....+..   |...|++++|+| ++. .|++|+
T Consensus        92 ~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~---h~~~v~~v~~~~-~~~~~l~sgs  166 (311)
T d1nr0a1          92 HILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG---QARAMNSVDFKP-SRPFRIISGS  166 (311)
T ss_dssp             CCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCC---CSSCEEEEEECS-SSSCEEEEEE
T ss_pred             cccccccccccCccccccccc-cccccccccccccccccccccccccccccccc---cccccccccccc-cceeeecccc
Confidence            555566788999999999999 7788888875  45699999999887776665   999999999999 655 588999


Q ss_pred             cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe-------ecCCcce
Q 020107          216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY-------AKHGSLA  288 (331)
Q Consensus       216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v  288 (331)
                      .|+.|++||+++. +.... ...|..+|++++|+|++ ..+++++.++.+++|++...  ..+..+       .+|...|
T Consensus       167 ~d~~i~i~d~~~~-~~~~~-~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~--~~~~~~~~~~~~~~~h~~~V  241 (311)
T d1nr0a1         167 DDNTVAIFEGPPF-KFKST-FGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDG--TKTGVFEDDSLKNVAHSGSV  241 (311)
T ss_dssp             TTSCEEEEETTTB-EEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC--CEEEECBCTTSSSCSSSSCE
T ss_pred             ccccccccccccc-ccccc-cccccccccccccCccc-cccccccccccccccccccc--cccccccccccccccccccc
Confidence            9999999999985 33333 57889999999999997 67777888899999998764  344443       3688999


Q ss_pred             eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ++++|+|++         ++|++|+ .||.|+|||++++.+
T Consensus       242 ~~~~~s~~~---------~~l~tgs-~Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         242 FGLTWSPDG---------TKIASAS-ADKTIKIWNVATLKV  272 (311)
T ss_dssp             EEEEECTTS---------SEEEEEE-TTSEEEEEETTTTEE
T ss_pred             cccccCCCC---------CEEEEEe-CCCeEEEEECCCCcE
Confidence            999999998         6999999 999999999988754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-37  Score=252.12  Aligned_cols=287  Identities=12%  Similarity=0.063  Sum_probs=215.7

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee-cCcEeEEEEcCCCCCCCCeEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD-TAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      ..+++.+++|+|.+   +.||+++.         ....|+.|+.............+| ...|++++|+|...  +.+|+
T Consensus        16 ~~~~~t~l~~~~~~---~~la~~~~---------~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~--g~~la   81 (325)
T d1pgua1          16 QRNFTTHLSYDPTT---NAIAYPCG---------KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG--SQYLC   81 (325)
T ss_dssp             CTTCCCCCEEETTT---TEEEEEET---------TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTT--CCEEE
T ss_pred             CCCCeEEEEECCCC---CEEEEEeC---------CCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCC--CCEEE
Confidence            44567789999887   78888860         222355566544432333344566 46799999998532  67999


Q ss_pred             EEcCCccE-EEecCCCcc--------------cCccEEEEEEcCCCCeEEEEec--CCeEEEEEccccceeeeeeeeccc
Q 020107           87 QADADGGL-LRDITGEKI--------------SSSMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQQWKAHE  149 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~  149 (331)
                      +|+.||.+ +|++.....              +..+|.+++|+++++.+++++.  ++.+.+|+.++++.  +..+.+|.
T Consensus        82 sgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~  159 (325)
T d1pgua1          82 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS--LGEVSGHS  159 (325)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE--EEECCSCS
T ss_pred             EEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc--ceeeeecc
Confidence            99999999 999865332              4678999999999999887764  67899999988754  77888999


Q ss_pred             ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107          150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      ..|.+++|+|.++.++++++.|+.+++||.+..+....+.....|...|.+++|+|+.+.+|++++.|+.|++||++++ 
T Consensus       160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-  238 (325)
T d1pgua1         160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-  238 (325)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-
T ss_pred             cccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc-
Confidence            9999999999666678899999999999998776655555545688899999999955789999999999999999985 


Q ss_pred             CCceeeeeecCCceEEEEEC---CCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc--ceeeeeecCCCCcccccc
Q 020107          230 KPVNETSVCLGGGVWRIKHH---PFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS--LAYGADWQRGRSSLEGKR  304 (331)
Q Consensus       230 ~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~  304 (331)
                      +.+.. +..|..++..+.|+   |++ .++++++.|+.+++|++..  ++++..+..|..  .+..+++.+.+.      
T Consensus       239 ~~~~~-l~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------  308 (325)
T d1pgua1         239 EFLKY-IEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTT--SKCVQKWTLDKQQLGNQQVGVVATGN------  308 (325)
T ss_dssp             CEEEE-CCBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTT--TEEEEEEECCTTCGGGCEEEEEEEET------
T ss_pred             ccccc-ccccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCC--CCEEEEEEecCCcccCeEEEEEECCC------
Confidence            44443 45666665444443   444 6788888889899998876  577777765544  333444443322      


Q ss_pred             cCcEEEEeecCCCeEEEEcC
Q 020107          305 KNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       305 ~~~~l~s~~~~d~~i~iW~~  324 (331)
                        .+|+++| .||.|++||+
T Consensus       309 --~~l~s~s-~dg~i~vwdl  325 (325)
T d1pgua1         309 --GRIISLS-LDGTLNFYEL  325 (325)
T ss_dssp             --TEEEEEE-TTSCEEEEET
T ss_pred             --CEEEEEE-CCCEEEEEEC
Confidence              4899999 9999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-36  Score=252.83  Aligned_cols=243  Identities=14%  Similarity=0.056  Sum_probs=202.4

Q ss_pred             eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEc
Q 020107           64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSV  134 (331)
Q Consensus        64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  134 (331)
                      ....+|++++|+|+    +++||+|+.||.+ +|++.+.+        .|..+|.+++|+|++++|++++.|+.|++||+
T Consensus         5 ~~~~pIt~~~~s~d----g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           5 FLVEPISCHAWNKD----RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             SCSSCCCEEEECTT----SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CCCCCeEEEEECCC----CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEee
Confidence            34578999999999    9999999999999 99997653        26789999999999999999999999999999


Q ss_pred             cccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee-cccCCCcceEEEEEecCCCCEEEE
Q 020107          135 VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ-NSKIHKMGVCCIASIPSDSNTLLT  213 (331)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~  213 (331)
                      .++...+...+..|...|++++|+| +++.|++++.|+.+++|++.......... ....|...|.+++|+| ++.+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s  158 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAA  158 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEE
T ss_pred             ccccccccccccccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccc-cccceec
Confidence            9877666777778899999999999 78999999999999999998766533322 2345889999999999 9999999


Q ss_pred             EecCCeEEEEEecCCCC----------------CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccce
Q 020107          214 GSYDEYLRVWDVRSISK----------------PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEV  277 (331)
Q Consensus       214 ~~~d~~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (331)
                      |+.|++|++||......                ........|.+.|.+++|+|++ ..+++++.++.+.+|++..  ++.
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~--~~~  235 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADK--KMA  235 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGG--TTE
T ss_pred             cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc-ccccccccCCcceEEeeec--ccc
Confidence            99999999999865321                1112235678889999999997 6777777888899999876  578


Q ss_pred             eEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          278 LETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       278 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +..+..|..+|.+++|+|++         ++|++|  .|+.+++|..+.
T Consensus       236 ~~~~~~~~~~v~s~~fs~d~---------~~la~g--~d~~~~~~~~~~  273 (371)
T d1k8kc_         236 VATLASETLPLLAVTFITES---------SLVAAG--HDCFPVLFTYDS  273 (371)
T ss_dssp             EEEEECSSCCEEEEEEEETT---------EEEEEE--TTSSCEEEEEET
T ss_pred             eeeeecccccceeeeecCCC---------CEEEEE--cCCceEEEEeeC
Confidence            88899999999999999998         566655  588877776543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.7e-35  Score=245.24  Aligned_cols=263  Identities=18%  Similarity=0.261  Sum_probs=211.5

Q ss_pred             CCCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------------
Q 020107           42 RNGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------------  103 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------------  103 (331)
                      .++...+|+.......   +... ..|.+.|++|+|+|+    +++|++|+ |+.+ +|++.+++.              
T Consensus        36 ~~~~~~~~~~~~~~~~~~~l~~~-~~H~~~V~~l~fs~d----g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          36 TNDYYILYNPALPREIDVELHKS-LDHTSVVCCVKFSND----GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             CSSCEEEECTTSCCCEEEEEEEE-EECSSCCCEEEECTT----SSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             CCCcEEEeCCCCCcceeeeeEee-CCCCCcEEEEEECCC----CCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence            5889999997654311   2222 359999999999999    99999987 8888 999876432              


Q ss_pred             ----------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCe
Q 020107          104 ----------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCK  173 (331)
Q Consensus       104 ----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  173 (331)
                                +...|.+++|+|++++|++|+.||.|++||...++.  +..+.+|...|.++++++ ++..+++++.++.
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~  186 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFP-SGDKLVSGSGDRT  186 (388)
T ss_dssp             ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred             cccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccc--cccccccccccccccccc-cccccccccccee
Confidence                      356699999999999999999999999999988754  677888999999999998 7889999999999


Q ss_pred             EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee------eeeecCCceEEEE
Q 020107          174 FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE------TSVCLGGGVWRIK  247 (331)
Q Consensus       174 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~v~~~~  247 (331)
                      +++||.++........    +.....++.+.+.++.+|++++.|+.|++||.++.. ....      ....|...|.+++
T Consensus       187 i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~  261 (388)
T d1erja_         187 VRIWDLRTGQCSLTLS----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVV  261 (388)
T ss_dssp             EEEEETTTTEEEEEEE----CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEEE
T ss_pred             eeeeeccccccccccc----cccccccccccCCCCCeEEEEcCCCeEEEeecccCc-cceeeccccccccCCCCCEEEEE
Confidence            9999999876555444    355566677777688999999999999999998753 2222      1245788999999


Q ss_pred             ECCCCCCeEEEEEecCcEEEEEEcCcc----------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107          248 HHPFIPGLVLAACMHNGFAVVKVGGEK----------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR  317 (331)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~  317 (331)
                      |+|++ ..+++++.++.+++|++....          .........|...|++++|+|++         ++|++|+ .||
T Consensus       262 ~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~sg~-~dg  330 (388)
T d1erja_         262 FTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND---------EYILSGS-KDR  330 (388)
T ss_dssp             ECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG---------CEEEEEE-TTS
T ss_pred             ECCCC-CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC---------CEEEEEe-CCC
Confidence            99997 677788888889999986532          33455666899999999999998         6999999 999


Q ss_pred             eEEEEcCCCccc
Q 020107          318 LLRIWMPESDCL  329 (331)
Q Consensus       318 ~i~iW~~~~~~~  329 (331)
                      .|++||+.++..
T Consensus       331 ~i~vwd~~~~~~  342 (388)
T d1erja_         331 GVLFWDKKSGNP  342 (388)
T ss_dssp             EEEEEETTTCCE
T ss_pred             EEEEEECCCCcE
Confidence            999999988754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-35  Score=242.18  Aligned_cols=275  Identities=16%  Similarity=0.232  Sum_probs=207.0

Q ss_pred             eeeecCcceeE-eeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107            5 HCELDGNADAV-EFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         5 ~~~~~~~~~~v-~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      +.+|.||...| .+..  +++++||+|+          .||.|+|||+.+.+  ....+.+|.++|++++|+|+    + 
T Consensus         5 ~~tL~GH~~~vitc~~--~~~~~l~tgs----------~Dg~i~vWd~~~~~--~~~~l~~H~~~V~~l~~s~~----~-   65 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQ--FEDNYVITGA----------DDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAHG----G-   65 (355)
T ss_dssp             EEEEECCSSSCEEEEE--EETTEEEEEE----------TTTEEEEEETTTTE--EEEEEECCSSCEEEEEEETT----T-
T ss_pred             cEEECCcCCCcEEEEE--ECCCEEEEEe----------CCCeEEEEECCCCc--EEEEEECCCCCEEEEEEcCC----C-
Confidence            45678886543 2211  2348999999          79999999998875  44455889999999999986    3 


Q ss_pred             eEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce---------------
Q 020107           84 FLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL---------------  139 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------  139 (331)
                      +|++|+.|+.+ +|++.....        +........+.++++.+++++.|+.|++||+.+...               
T Consensus        66 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d1nexb2          66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  145 (355)
T ss_dssp             EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred             EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence            89999999999 999877543        223344555667777777777777777777653210               


Q ss_pred             ----------------------------------------------eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCe
Q 020107          140 ----------------------------------------------EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCK  173 (331)
Q Consensus       140 ----------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  173 (331)
                                                                    +.+....++...+.++.|+| .+..+++++.|+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~  224 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTT  224 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred             ccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccce
Confidence                                                          11223334556777888998 7789999999999


Q ss_pred             EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEE-ECCCC
Q 020107          174 FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIK-HHPFI  252 (331)
Q Consensus       174 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~  252 (331)
                      |++||++++.....+..   |...|.++++++   ++|++++.||.|++||+++..+ .   ...|...+..+. ++++ 
T Consensus       225 i~i~d~~~~~~~~~~~~---h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~-~---~~~~~~~~~~~~~~~~~-  293 (355)
T d1nexb2         225 IRIWDLENGELMYTLQG---HTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSR-K---FSYHHTNLSAITTFYVS-  293 (355)
T ss_dssp             EEEEETTTCCEEEEECC---CSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCE-E---EEEECTTCCCCCEEEEC-
T ss_pred             EEeeecccccccccccc---cccccccccccc---ceeeeeecccccccccccccce-e---cccccCCceEEEEEcCC-
Confidence            99999999887777766   999999999865   7999999999999999987532 1   245666666654 4555 


Q ss_pred             CCeEEEEEecCcEEEEEEcCcccceeE-EeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107          253 PGLVLAACMHNGFAVVKVGGEKAEVLE-TYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP  324 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~  324 (331)
                       +.++++++++.+++|++..  ++++. .+.+|.+.|++++|+|+          .++++++ .||+++||.+
T Consensus       294 -~~~l~~g~d~~i~vwd~~t--g~~~~~~~~~~~~~V~~v~~~~~----------~~~~~~s-~dg~~~l~~~  352 (355)
T d1nexb2         294 -DNILVSGSENQFNIYNLRS--GKLVHANILKDADQIWSVNFKGK----------TLVAAVE-KDGQSFLEIL  352 (355)
T ss_dssp             -SSEEEEEETTEEEEEETTT--CCBCCSCTTTTCSEEEEEEEETT----------EEEEEEE-SSSCEEEEEE
T ss_pred             -CCEEEEEeCCEEEEEECCC--CCEEEEEecCCCCCEEEEEEcCC----------eEEEEEE-CCCcEEEEEE
Confidence             5677788899999999876  45553 46789999999999987          4888898 9999777654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-34  Score=234.01  Aligned_cols=246  Identities=15%  Similarity=0.218  Sum_probs=215.2

Q ss_pred             EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107           59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSI  131 (331)
Q Consensus        59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i  131 (331)
                      +..+++|.++|++|+|+|+    +++|++|+.||.+ +|++.+.+.      |...|.+++|+|++..++++..++.+.+
T Consensus        10 ~~~L~GH~~~I~~l~~sp~----~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPV----FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             SCEEECCSSCEEEEEECSS----SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             cEEEcCCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence            3456899999999999999    8999999999999 999987654      6889999999999999999999999999


Q ss_pred             EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107          132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      |+....+.  ...+..|...+.++.|+| +++.+++++.|+.+++||+++++....+..   |...+.+++|+| ++.+|
T Consensus        86 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~l  158 (317)
T d1vyhc1          86 WDFQGFEC--IRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTG---HREWVRMVRPNQ-DGTLI  158 (317)
T ss_dssp             EETTSSCE--EECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECT-TSSEE
T ss_pred             cccccccc--ccccccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEcc---CCCcceeeeccc-CCCEE
Confidence            99887654  566778899999999998 778999999999999999999987777776   899999999999 99999


Q ss_pred             EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC-------------------CeEEEEEecCcEEEEEEcC
Q 020107          212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP-------------------GLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~  272 (331)
                      ++++.|+.|++|++++. ..... +..|...+.+++|+|+..                   ..+++++.++.+++|++..
T Consensus       159 ~~~~~d~~v~~~~~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  236 (317)
T d1vyhc1         159 ASCSNDQTVRVWVVATK-ECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  236 (317)
T ss_dssp             EEEETTSCEEEEETTTC-CEEEE-ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             EEEeCCCeEEEEeeccc-eeeEE-EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC
Confidence            99999999999999985 33433 468889999999988642                   3466677778888888776


Q ss_pred             cccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          273 EKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       273 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                        ++.+.++.+|...|.+++|+|++         ++|++++ .||.|++||+.++.+
T Consensus       237 --~~~~~~~~~~~~~v~~~~~~~~~---------~~l~s~~-~dg~i~iwd~~~~~~  281 (317)
T d1vyhc1         237 --GMCLMTLVGHDNWVRGVLFHSGG---------KFILSCA-DDKTLRVWDYKNKRC  281 (317)
T ss_dssp             --TEEEEEEECCSSCEEEEEECSSS---------SCEEEEE-TTTEEEEECCTTSCC
T ss_pred             --CcEEEEEeCCCCCEEEEEECCCC---------CEEEEEE-CCCeEEEEECCCCcE
Confidence              68889999999999999999998         6999999 999999999988754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=231.22  Aligned_cols=276  Identities=13%  Similarity=0.184  Sum_probs=210.1

Q ss_pred             eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107            6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      ..+.||...|..+ ..+++++||+|+          .||.|+|||+.+++  +...+.+|...|.+++|+|+      +|
T Consensus        10 ~~l~GH~~~V~s~-~~~~g~~l~sgs----------~Dg~i~vWd~~~~~--~~~~~~~h~~~V~~v~~~~~------~l   70 (342)
T d2ovrb2          10 KVLKGHDDHVITC-LQFCGNRIVSGS----------DDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDN------II   70 (342)
T ss_dssp             EEEECSTTSCEEE-EEEETTEEEEEE----------TTSCEEEEETTTCC--EEEECCCCSSCEEEEEEETT------EE
T ss_pred             EEECCcCCceEEE-EEECCCEEEEEe----------CCCeEEEEECCCCC--EEEEEeCCCCCEEEEEeCCC------cc
Confidence            4577776654211 222348999999          79999999998876  44455889999999999987      99


Q ss_pred             EEEcCCccE-EEecCCCccc------C-------------------ccE-------------------EEEEEcCCCCeE
Q 020107           86 AQADADGGL-LRDITGEKIS------S-------------------SMC-------------------LCLEWNPSATSI  120 (331)
Q Consensus        86 ~~~~~dg~i-iw~~~~~~~~------~-------------------~~v-------------------~~~~~~~~~~~l  120 (331)
                      ++++.|+.+ +|+.......      .                   ..+                   ......+....+
T Consensus        71 ~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T d2ovrb2          71 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV  150 (342)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCE
T ss_pred             ccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecccccee
Confidence            999999999 7776543220      0                   000                   011223345678


Q ss_pred             EEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEE
Q 020107          121 TVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCC  200 (331)
Q Consensus       121 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  200 (331)
                      ++++.|+.|++||....+  .+..+.+|...+..+.+   ++..+++++.||.|++||++.++....+..   |...+.+
T Consensus       151 ~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~---~~~~v~~  222 (342)
T d2ovrb2         151 VSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTG---HQSLTSG  222 (342)
T ss_dssp             EEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECC---CCSCEEE
T ss_pred             eeecCCCeEEEeecccce--eeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccceeeeEecc---cccceeE
Confidence            889999999999998764  46777888877776665   457899999999999999999887776666   8999999


Q ss_pred             EEEecCCCCEEEEEecCCeEEEEEecCCCCCceee--eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccccee
Q 020107          201 IASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET--SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVL  278 (331)
Q Consensus       201 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (331)
                      +.+++   ++|++++.|+.|++||+...+ .....  ...|...+.++.+++   ..+++++.++.+++|++..  ++.+
T Consensus       223 ~~~~~---~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~t--g~~i  293 (342)
T d2ovrb2         223 MELKD---NILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKT--GEFI  293 (342)
T ss_dssp             EEEET---TEEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTT--CCEE
T ss_pred             EecCC---CEEEEEcCCCEEEEEeccccc-ccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCC--CCEE
Confidence            88865   699999999999999998753 33321  124566788888876   4677888888899999876  4666


Q ss_pred             EEee-----cCCcceeeeeecCCCCcccccccCcEEEEeecCCCe----EEEEcCCCc
Q 020107          279 ETYA-----KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL----LRIWMPESD  327 (331)
Q Consensus       279 ~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~----i~iW~~~~~  327 (331)
                      .++.     +|...|++++|+|++         .+|++|+ .||+    |++||++..
T Consensus       294 ~~~~~~~~~~~~~~v~~v~~s~~~---------~~la~g~-~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         294 RNLVTLESGGSGGVVWRIRASNTK---------LVCAVGS-RNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             EEEEECTTGGGTCEEEEEEECSSE---------EEEEEEC-SSSSSCCEEEEEECCCC
T ss_pred             EEEecccCCCCCCCEEEEEECCCC---------CEEEEEe-CCCCCeeEEEEEeCCCC
Confidence            6653     578899999999998         7999998 8885    999999754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.4e-33  Score=225.73  Aligned_cols=244  Identities=12%  Similarity=0.109  Sum_probs=195.1

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSV  129 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i  129 (331)
                      +..++.+|..+|++++|+|+    +++|++|+.||.+ +|++.+++.       |...|.+++|+|+++ +++++.|+.+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~d----g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v   78 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSAD----GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHL   78 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEE
T ss_pred             cceEcCCCCCCcEEEEECCC----CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeE
Confidence            56778999999999999999    9999999999999 999987543       678899999999986 5566778999


Q ss_pred             EEEEccccceee-eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC
Q 020107          130 SIVSVVESQLEV-LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS  208 (331)
Q Consensus       130 ~i~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  208 (331)
                      ++|+........ ......+...+.+++|+| ++..+++++ ++.+++|+....   ....    ....+.+++|+| ++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~~---~~~~----~~~~~~~~~~s~-~~  148 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGKL---TEVP----ISYNSSCVALSN-DK  148 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETTEE---EEEE----CSSCEEEEEECT-TS
T ss_pred             EEeccCCcccccccccccccccccccccccc-ccccccccc-cccccccccccc---cccc----cccccccccccc-cc
Confidence            999987643221 222345677889999998 666666554 678999995432   2222    355688999999 99


Q ss_pred             CEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-cceeEEeecCCcc
Q 020107          209 NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-AEVLETYAKHGSL  287 (331)
Q Consensus       209 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~  287 (331)
                      ++|++|+.|+.|++||+++. .........|...|++++|+|++ ..+++++.++.+++|++.... ......+.+|...
T Consensus       149 ~~l~~g~~dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~  226 (299)
T d1nr0a2         149 QFVAVGGQDSKVHVYKLSGA-SVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK  226 (299)
T ss_dssp             CEEEEEETTSEEEEEEEETT-EEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999874 33333346889999999999987 677778888889999987642 2334556789999


Q ss_pred             eeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          288 AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       288 v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      |++++|+|++         .+|++++ .|+.|++||++++.
T Consensus       227 v~~l~~s~~~---------~~l~sgs-~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         227 VACVSWSPDN---------VRLATGS-LDNSVIVWNMNKPS  257 (299)
T ss_dssp             EEEEEECTTS---------SEEEEEE-TTSCEEEEETTCTT
T ss_pred             cccccccccc---------cceEEEc-CCCEEEEEECCCCC
Confidence            9999999998         6999999 99999999998764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-32  Score=217.99  Aligned_cols=256  Identities=14%  Similarity=0.246  Sum_probs=202.5

Q ss_pred             CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc
Q 020107           24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK  102 (331)
Q Consensus        24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~  102 (331)
                      +++||+|+          .||.|+|||+.+.+  ....+.+|...|++++|++      ++|++|+.|+.+ +|++....
T Consensus        25 ~~~l~sgs----------~Dg~i~vWd~~~~~--~~~~l~~H~~~V~~v~~~~------~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          25 DQKIVSGL----------RDNTIKIWDKNTLE--CKRILTGHTGSVLCLQYDE------RVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             SSEEEEEE----------SSSCEEEEESSSCC--EEEEECCCSSCEEEEECCS------SEEEEEETTSCEEEEESSSCC
T ss_pred             CCEEEEEe----------CCCeEEEEECCCCc--EEEEEecCCCCEeeeeccc------ceeeccccccccccccccccc
Confidence            48999999          79999999998875  4455588999999998854      499999999999 99998765


Q ss_pred             cc----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccce-eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107          103 IS----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL-EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW  177 (331)
Q Consensus       103 ~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (331)
                      ..    ........+.+....++++..++.+.+|+...... .....+..|...+..+.+.+   ..+++++.|+.+++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~  163 (293)
T d1p22a2          87 MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVW  163 (293)
T ss_dssp             EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEE
T ss_pred             ccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCCceeee
Confidence            42    12222344556677899999999999999987542 23445567888888888765   678889999999999


Q ss_pred             EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE
Q 020107          178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL  257 (331)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  257 (331)
                      |+++++....+..   +...+..+.++   +.++++++.|+.|++||+++. ..+.. ...+...+..+.+  +. ..++
T Consensus       164 d~~~~~~~~~~~~---~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~-~~~~~-~~~~~~~v~~~~~--~~-~~l~  232 (293)
T d1p22a2         164 NTSTCEFVRTLNG---HKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-ACLRV-LEGHEELVRCIRF--DN-KRIV  232 (293)
T ss_dssp             ETTTCCEEEEEEC---CSSCEEEEEEE---TTEEEEEETTSCEEEEETTTC-CEEEE-ECCCSSCEEEEEC--CS-SEEE
T ss_pred             cCCCCcEEEEEcc---cccccccccCC---CCeEEEecCCCEEEEEecccc-eeeee-ecccceeeeeccc--cc-eEEE
Confidence            9999887777766   78888888775   468999999999999999985 43433 4667777776544  43 6788


Q ss_pred             EEEecCcEEEEEEcCcc-------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107          258 AACMHNGFAVVKVGGEK-------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM  323 (331)
Q Consensus       258 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~  323 (331)
                      +++.++.+++|++....       ...+..+.+|.+.|++++|++           .+|+|+| .||+|++||
T Consensus       233 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~-----------~~l~s~s-~Dg~i~iWD  293 (293)
T d1p22a2         233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE-----------FQIVSSS-HDDTILIWD  293 (293)
T ss_dssp             EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS-----------SCEEECC-SSSEEEEEC
T ss_pred             EEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC-----------CEEEEEe-cCCEEEEeC
Confidence            88889999999975421       456788999999999999953           4799999 999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-32  Score=220.50  Aligned_cols=269  Identities=11%  Similarity=0.155  Sum_probs=204.3

Q ss_pred             eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107            6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      ..+.+|...|....++|    |++|+          .||.|++||+.+.       ...|...|.+++++++     ..+
T Consensus         7 ~~l~gH~~~I~~l~~s~----l~sgs----------~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~~~~-----~~~   60 (287)
T d1pgua2           7 KTISGHNKGITALTVNP----LISGS----------YDGRIMEWSSSSM-------HQDHSNLIVSLDNSKA-----QEY   60 (287)
T ss_dssp             EEECCCSSCEEEEETTT----TEEEE----------TTSCEEETTTTEE-------ECCCCSCEEEEECCST-----TCC
T ss_pred             EEECCCCCceEEEEECc----EEEEe----------CCCeEEEEECCCC-------CCCCCCCEEEEEecCC-----CeE
Confidence            35666666666655553    88888          7999999998654       2579999999999876     367


Q ss_pred             EEEcCCccE-EEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE
Q 020107           86 AQADADGGL-LRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM  164 (331)
Q Consensus        86 ~~~~~dg~i-iw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (331)
                      ++++.|+++ +|++...+.. ..+..+.+++++..++++ .++.+.+|+..+++.  +..+.. ...+.  +++| ++..
T Consensus        61 ~s~s~D~~v~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~-~~~~~--~~~~-~~~~  132 (287)
T d1pgua2          61 SSISWDDTLKVNGITKHEFG-SQPKVASANNDGFTAVLT-NDDDLLILQSFTGDI--IKSVRL-NSPGS--AVSL-SQNY  132 (287)
T ss_dssp             EEEETTTEEEETTEEEEECS-SCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCE--EEEEEC-SSCEE--EEEE-CSSE
T ss_pred             EEEeeccccccccccccccc-cceeeeeeccCCceEEEe-ecccceeeeccceee--eeeccc-cceee--eeec-cCcc
Confidence            899999999 9998776543 456788888887766665 556788898887654  444543 33344  4455 3455


Q ss_pred             EEEEcCC-CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCce
Q 020107          165 VYTGSDD-CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV  243 (331)
Q Consensus       165 l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  243 (331)
                      +++++.+ +.+++|++...+....+.  ..|...+++++|+| ++.+|++|+.||.|++||+.+. .........|..+|
T Consensus       133 ~~v~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~h~~~v  208 (287)
T d1pgua2         133 VAVGLEEGNTIQVFKLSDLEVSFDLK--TPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSR-EVKTSRWAFRTSKI  208 (287)
T ss_dssp             EEEEETTTSCEEEEETTEEEEEEECS--SCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEECCSCCCSSCE
T ss_pred             eeeeccccceeeeeeccccceeeeee--eccCCceeEEEecc-Cccccccccccccccceeeccc-cccccccccccccc
Confidence            5555555 579999997654333332  34788999999999 9999999999999999999885 33333346889999


Q ss_pred             EEEEECCCC---------CCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107          244 WRIKHHPFI---------PGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF  314 (331)
Q Consensus       244 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  314 (331)
                      .+++|+|.+         ..++++++.|+.+++|++... .+.+..+.+|...|++++|+|++          .|+|+| 
T Consensus       209 ~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~-~~~~~~~~~h~~~V~~v~~~~~~----------~l~s~g-  276 (287)
T d1pgua2         209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-MKIIKALNAHKDGVNNLLWETPS----------TLVSSG-  276 (287)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-TCCEEETTSSTTCEEEEEEEETT----------EEEEEE-
T ss_pred             ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC-CeEEEEeCCCCCCeEEEEECCCC----------EEEEEE-
Confidence            999999854         246777778889999998764 56777788999999999999985          689999 


Q ss_pred             CCCeEEEEcC
Q 020107          315 YDRLLRIWMP  324 (331)
Q Consensus       315 ~d~~i~iW~~  324 (331)
                      .|+.|++|++
T Consensus       277 ~D~~v~iW~i  286 (287)
T d1pgua2         277 ADACIKRWNV  286 (287)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            8999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-30  Score=215.33  Aligned_cols=247  Identities=19%  Similarity=0.227  Sum_probs=203.1

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      .+..+++|.+.|++|+|+|+    +++|++|+.||.+ +|++.+.+.      |...|.+++|+|+++++++|+.|+.++
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~----~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTD----SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTT----SSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             eeEEECCCCCCEEEEEECCC----CCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceee
Confidence            44566899999999999999    8999999999999 999988654      688999999999999999999999999


Q ss_pred             EEEccccce--eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC
Q 020107          131 IVSVVESQL--EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS  208 (331)
Q Consensus       131 i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  208 (331)
                      +|+......  .....+.+|..........  ....+.....+.....++............   +...+....+.+ ..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~  196 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTFTG---HTGDVMSLSLAP-DT  196 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEEC---CSSCEEEEEECT-TS
T ss_pred             cccccccccccccceecccccccccccccc--cccccccccccccccccccccccccccccc---cceeEeeecccc-cc
Confidence            999876432  2344566677666665554  346777788899999999887665555544   788899999999 89


Q ss_pred             CEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe--ecCCc
Q 020107          209 NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY--AKHGS  286 (331)
Q Consensus       209 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~  286 (331)
                      .++++++.|+.|++||+++. +++.. +..|...|++++|+|++ ..+++++.++.+++|++...  ..+..+  ..|..
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~-~~~~~-~~~h~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~--~~~~~~~~~~~~~  271 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREG-MCRQT-FTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRAD--QELMTYSHDNIIC  271 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTT-EEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTT--EEEEEECCTTCCS
T ss_pred             ceeEEeecCceEEEEECCCC-cEEEE-EeCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeeccc--ccccccccccccC
Confidence            99999999999999999985 44444 57899999999999987 67778888888999998874  444433  46777


Q ss_pred             ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      .|++++|+|++         ++|++++ .||.|++||+.++.+
T Consensus       272 ~i~~~~~s~~~---------~~l~~g~-~dg~i~iwd~~~~~~  304 (340)
T d1tbga_         272 GITSVSFSKSG---------RLLLAGY-DDFNCNVWDALKADR  304 (340)
T ss_dssp             CEEEEEECSSS---------CEEEEEE-TTSCEEEEETTTCCE
T ss_pred             ceEEEEECCCC---------CEEEEEE-CCCEEEEEECCCCcE
Confidence            89999999998         6999999 999999999987643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-31  Score=219.99  Aligned_cols=240  Identities=17%  Similarity=0.141  Sum_probs=180.7

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc------eEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN------LELLYRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      ..+.+++|+|.. ++++||+|+          .||+|+|||+......      .......|.++|.+++|+|+    ++
T Consensus        64 ~~v~~v~fsP~~-~g~~lasgs----------~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~----~~  128 (325)
T d1pgua1          64 SVVTTVKFSPIK-GSQYLCSGD----------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE----GR  128 (325)
T ss_dssp             SCEEEEEECSST-TCCEEEEEE----------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT----SS
T ss_pred             CCEEEEEEeeCC-CCCEEEEEe----------CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCC----CC
Confidence            358899999864 237999998          8999999999765421      22233557889999999999    88


Q ss_pred             eEEEEcC--CccE-EEecCCCcc------cCccEEEEEEcCCCCe-EEEEecCCeEEEEEccccceee-eeeeeccccee
Q 020107           84 FLAQADA--DGGL-LRDITGEKI------SSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEV-LQQWKAHEFEL  152 (331)
Q Consensus        84 ~l~~~~~--dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~v  152 (331)
                      +|++++.  ++.+ +|+..+.+.      |...|.+++|+|+++. +++++.|+.+++||....+... ......|...|
T Consensus       129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v  208 (325)
T d1pgua1         129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV  208 (325)
T ss_dssp             EEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCE
T ss_pred             ccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCcc
Confidence            8887765  4444 777765443      6789999999999876 6778899999999998754322 22345677889


Q ss_pred             EEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe---cCCCCEEEEEecCCeEEEEEecCCC
Q 020107          153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI---PSDSNTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      ++++|+|+.+.++++++.|+.|++||+++++....+..   |...+.++.|+   | ++.+|++++.|+.|+|||+++. 
T Consensus       209 ~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~---~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~-  283 (325)
T d1pgua1         209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED---DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-  283 (325)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB---TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-
T ss_pred             EEeeeccccceeccccccccceeeeeeccccccccccc---cccccccceeeeecc-CCCEEEEEeCCCeEEEEECCCC-
Confidence            99999996678999999999999999999987777765   66666554444   4 7889999999999999999985 


Q ss_pred             CCceeeeeecC--CceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          230 KPVNETSVCLG--GGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       230 ~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                      +++.. +..|.  ..+..+++.+.++..+++++.++.+++|++
T Consensus       284 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         284 KCVQK-WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEE-EECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CEEEE-EEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            44444 23333  334444444433378888888899999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-30  Score=211.95  Aligned_cols=287  Identities=11%  Similarity=0.124  Sum_probs=208.5

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEE-eEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL-LYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      +..+.+|+|+|.+   ++||+|+          .||+|+|||+......... ...+|..+|.+++|+|+.   +.+|++
T Consensus        11 ~d~I~~l~fsp~~---~~L~s~s----------~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~---~~~l~s   74 (342)
T d1yfqa_          11 KDYISDIKIIPSK---SLLLITS----------WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT---DLQIYV   74 (342)
T ss_dssp             SSCEEEEEEEGGG---TEEEEEE----------TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS---SEEEEE
T ss_pred             CCCEEEEEEeCCC---CEEEEEE----------CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC---CCEEEE
Confidence            4458888998876   8999998          7999999999876432222 223689999999999873   568999


Q ss_pred             EcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee--eeeecc--cceeEEE
Q 020107           88 ADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL--QQWKAH--EFELWAT  155 (331)
Q Consensus        88 ~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~--~~~v~~~  155 (331)
                      |+.||.+ +|++.....       +........+.++...+++++.++.+++||++.......  .....+  .......
T Consensus        75 g~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d1yfqa_          75 GTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF  154 (342)
T ss_dssp             EETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred             cccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeee
Confidence            9999999 999877544       233334555667788999999999999999976443221  112211  2233445


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee-
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE-  234 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-  234 (331)
                      .+.+ ....+++++.|+.|++||++.............+...+.+..+.+.++..+++++.||.+.+|++......... 
T Consensus       155 ~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~  233 (342)
T d1yfqa_         155 TMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             EEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             eeec-cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc
Confidence            5555 66889999999999999999877655444333456667777777757889999999999999998754221110 


Q ss_pred             ------------eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccc
Q 020107          235 ------------TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEG  302 (331)
Q Consensus       235 ------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  302 (331)
                                  ....|...|++++|+|++ .+|++++.|+.+++|++..  .+.+.++..+ ..+..++|+|++     
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~--~~~l~~~~~~-~~~~~~~~s~~~-----  304 (342)
T d1yfqa_         234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQT--RKKIKNFAKF-NEDSVVKIACSD-----  304 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTT--TEEEEECCCC-SSSEEEEEEECS-----
T ss_pred             ccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCC--CcEEEEecCC-CCCEEEEEEeCC-----
Confidence                        013466689999999997 6788888888999999887  4667777543 234456777887     


Q ss_pred             cccCcEEEEeecCCCeEEEEcCCC
Q 020107          303 KRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       303 ~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                          +++++++ .|+.+++|....
T Consensus       305 ----~~l~~a~-sdd~~~~~~~~~  323 (342)
T d1yfqa_         305 ----NILCLAT-SDDTFKTNAAID  323 (342)
T ss_dssp             ----SEEEEEE-ECTHHHHCSSSC
T ss_pred             ----CEEEEEE-cCCcEEEeeeeC
Confidence                5888887 788888887644

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.8e-29  Score=212.85  Aligned_cols=290  Identities=12%  Similarity=0.097  Sum_probs=200.8

Q ss_pred             cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ce--EEeEeeecCcEeE------EEEcCCC
Q 020107            9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NL--ELLYRMDTAGIFD------IKWSPVG   78 (331)
Q Consensus         9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~--~~~~~~~~~~v~~------~~~~~~~   78 (331)
                      ++.+.+|+++   +  ++|++++          .|+.|+|||....+.  +.  ......|...+..      +..++..
T Consensus        14 ~~~I~~v~~~---~--~~l~S~S----------~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (393)
T d1sq9a_          14 DADIFSVSAC---N--SFTVSCS----------GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE   78 (393)
T ss_dssp             SSCEEEEEEC---S--SEEEEEE----------TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred             cCccEEEEEe---C--CEEEEEE----------CCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCC
Confidence            4455566543   2  6899998          799999999765431  11  1111234333322      2222221


Q ss_pred             CCCCCeEEEEcCCccE-EEecCCCcc----------------cCccEEEEEEcCC-----CCeEEEEecCCeEEEEEccc
Q 020107           79 GNAGPFLAQADADGGL-LRDITGEKI----------------SSSMCLCLEWNPS-----ATSITVGLSDGSVSIVSVVE  136 (331)
Q Consensus        79 ~~~~~~l~~~~~dg~i-iw~~~~~~~----------------~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~  136 (331)
                         ..++++++.||.+ +|++.....                +...+..++|.++     +.++++++.||.+++|++..
T Consensus        79 ---~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~  155 (393)
T d1sq9a_          79 ---LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  155 (393)
T ss_dssp             ---EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             ---CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeec
Confidence               4578899999999 887654321                3456777888775     35789999999999999853


Q ss_pred             cce----------------eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec---ccCCCcc
Q 020107          137 SQL----------------EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN---SKIHKMG  197 (331)
Q Consensus       137 ~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~  197 (331)
                      ...                ........+...+++++|+| ++ +|++|+.|+.|++||+++++....+..   ..+|..+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~  233 (393)
T d1sq9a_         156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS  233 (393)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred             CCcccceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccce
Confidence            110                00111223455688999998 54 889999999999999998876555443   2358999


Q ss_pred             eEEEEEecCCCCEEEEEecCC---eEEEEEecCCCCCcee------------eeeecCCceEEEEECCCCCCeEEEEEec
Q 020107          198 VCCIASIPSDSNTLLTGSYDE---YLRVWDVRSISKPVNE------------TSVCLGGGVWRIKHHPFIPGLVLAACMH  262 (331)
Q Consensus       198 v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~  262 (331)
                      |++++|+| ++++|++|+.|+   .|++||++++ ..+..            ...+|.+.|++++|+|++ .++++++.|
T Consensus       234 V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-~~l~S~s~D  310 (393)
T d1sq9a_         234 IRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWD  310 (393)
T ss_dssp             EEEEEECS-STTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETT
T ss_pred             EEEccccc-ccceeeeecCCCCcceeeecccccc-eeeeeeccccccccceeeeecccCceeeeccCCCC-CeeEEECCC
Confidence            99999999 999999999987   4999999875 22222            124799999999999997 778888888


Q ss_pred             CcEEEEEEcCcccceeEEeecCCccee----eeeecCCCCc-----------------cc-ccccCcEEEEeecCCCeEE
Q 020107          263 NGFAVVKVGGEKAEVLETYAKHGSLAY----GADWQRGRSS-----------------LE-GKRKNSLVATCSFYDRLLR  320 (331)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~h~~~v~----~~~~~~~~~~-----------------~~-~~~~~~~l~s~~~~d~~i~  320 (331)
                      +.+++|++..  ++++.++++|.+.|.    .++|+|++..                 .. .......|++++ .|+.|+
T Consensus       311 ~~v~vWd~~~--g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~ir  387 (393)
T d1sq9a_         311 GKLRFWDVKT--KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC-LDRSIR  387 (393)
T ss_dssp             SEEEEEETTT--TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE-TTTEEE
T ss_pred             CEEEEEECCC--CCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEE-cCCeEE
Confidence            9999999876  689999999987654    2445544321                 00 112234578888 899999


Q ss_pred             EEcC
Q 020107          321 IWMP  324 (331)
Q Consensus       321 iW~~  324 (331)
                      +|+-
T Consensus       388 ~~~~  391 (393)
T d1sq9a_         388 WFRE  391 (393)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            9864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.5e-29  Score=208.67  Aligned_cols=248  Identities=12%  Similarity=0.146  Sum_probs=175.0

Q ss_pred             EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------------cCccEEEE------EEcC-CCCe
Q 020107           60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------------SSSMCLCL------EWNP-SATS  119 (331)
Q Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------------~~~~v~~~------~~~~-~~~~  119 (331)
                      ...++|...|++++++++      +|++++.|+.+ +|+..+.+.            +...+..+      .... +...
T Consensus         8 ~~~~~H~~~I~~v~~~~~------~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNS------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   81 (393)
T ss_dssp             EESSCSSSCEEEEEECSS------EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             ecCCcccCccEEEEEeCC------EEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcE
Confidence            455789999999998766      99999999999 999765432            11222111      1111 2245


Q ss_pred             EEEEecCCeEEEEEccccceeeee--------eeecccceeEEEeeCCCC----CcEEEEEcCCCeEEEEEccCCCce--
Q 020107          120 ITVGLSDGSVSIVSVVESQLEVLQ--------QWKAHEFELWATSFDVHQ----PHMVYTGSDDCKFSGWDIRESPFK--  185 (331)
Q Consensus       120 l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~--  185 (331)
                      +++++.||.|++|++.........        ....+...+..++|.+..    ..++++++.||.+++||+......  
T Consensus        82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  161 (393)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence            778899999999998753221110        111244567777877632    468899999999999998643210  


Q ss_pred             -------------eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee-----eeeecCCceEEEE
Q 020107          186 -------------LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE-----TSVCLGGGVWRIK  247 (331)
Q Consensus       186 -------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~v~~~~  247 (331)
                                   ........+...+.+++|+| ++ +|++|+.|++|++||+++. +++..     .+..|..+|++++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEEEEE
T ss_pred             eeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeeccc-ccccccccccccccccceEEEcc
Confidence                         01111223566789999999 66 8999999999999999875 33322     2356889999999


Q ss_pred             ECCCCCCeEEEEEecCc---EEEEEEcCcccceeEEe-------------ecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107          248 HHPFIPGLVLAACMHNG---FAVVKVGGEKAEVLETY-------------AKHGSLAYGADWQRGRSSLEGKRKNSLVAT  311 (331)
Q Consensus       248 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  311 (331)
                      |+|++ .++++++.|+.   +++|++..  ++.+.++             .+|.+.|++++|+|++         ++|+|
T Consensus       239 ~spdg-~~l~sgs~D~t~~~i~lwd~~~--g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~---------~~l~S  306 (393)
T d1sq9a_         239 FSPQG-SLLAIAHDSNSFGCITLYETEF--GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG---------ETLCS  306 (393)
T ss_dssp             ECSST-TEEEEEEEETTEEEEEEEETTT--CCEEEEECBC--------CCBSBSSCEEEEEECSSS---------SEEEE
T ss_pred             ccccc-ceeeeecCCCCcceeeeccccc--ceeeeeeccccccccceeeeecccCceeeeccCCCC---------CeeEE
Confidence            99997 66777777665   45555543  3444444             4799999999999998         69999


Q ss_pred             eecCCCeEEEEcCCCccc
Q 020107          312 CSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       312 ~~~~d~~i~iW~~~~~~~  329 (331)
                      +| .|++|++||++++.+
T Consensus       307 ~s-~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         307 AG-WDGKLRFWDVKTKER  323 (393)
T ss_dssp             EE-TTSEEEEEETTTTEE
T ss_pred             EC-CCCEEEEEECCCCCE
Confidence            99 999999999998753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-28  Score=203.48  Aligned_cols=245  Identities=14%  Similarity=0.160  Sum_probs=187.4

Q ss_pred             ceEEeEeeecCcE-eEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCe
Q 020107           57 NLELLYRMDTAGI-FDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGS  128 (331)
Q Consensus        57 ~~~~~~~~~~~~v-~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~  128 (331)
                      |.+..+++|...| ++++|  +    +++|++|+.||.+ +|++.+.+.      |...|.+++|+|+ +.|++|+.||.
T Consensus         3 p~~~tL~GH~~~vitc~~~--~----~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~   75 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCLQF--E----DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRT   75 (355)
T ss_dssp             CEEEEEECCSSSCEEEEEE--E----TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCC
T ss_pred             CCcEEECCcCCCcEEEEEE--C----CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccc
Confidence            4456678998875 66666  4    5599999999999 999988664      7899999999985 58999999999


Q ss_pred             EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec------------------
Q 020107          129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN------------------  190 (331)
Q Consensus       129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------  190 (331)
                      |++|+....+.........+........+.+ ++..+++++.|+.|++||+++.........                  
T Consensus        76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            9999999876533333334445556667776 778999999999999999987543222110                  


Q ss_pred             --ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107          191 --SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVV  268 (331)
Q Consensus       191 --~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  268 (331)
                        ...|...+..  +.+ ++++++++..|+.|++||+++. +.+.. ...+...+.++.|+|++ ..+++++.++.+++|
T Consensus       155 ~~~~~~~~~v~~--~~~-~~~~~~~~~~d~~i~~~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~  228 (355)
T d1nexb2         155 GVLRGHMASVRT--VSG-HGNIVVSGSYDNTLIVWDVAQM-KCLYI-LSGHTDRIYSTIYDHER-KRCISASMDTTIRIW  228 (355)
T ss_dssp             EEEECCSSCEEE--EEE-ETTEEEEEETTSCEEEEETTTT-EEEEE-ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEE
T ss_pred             eeeeeccccccc--ccc-ccceeeeecccceeeeeecccc-cceee-eeccccccccccccccc-eeeecccccceEEee
Confidence              0113333433  344 6789999999999999999985 33333 46788889999999987 777888888999999


Q ss_pred             EEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          269 KVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       269 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ++..  +..+..+.+|...|+++++++           ++|++++ .||.|++||+.+...
T Consensus       229 d~~~--~~~~~~~~~h~~~v~~~~~~~-----------~~l~~~~-~dg~i~iwd~~~~~~  275 (355)
T d1nexb2         229 DLEN--GELMYTLQGHTALVGLLRLSD-----------KFLVSAA-ADGSIRGWDANDYSR  275 (355)
T ss_dssp             ETTT--CCEEEEECCCSSCCCEEEECS-----------SEEEEEC-TTSEEEEEETTTCCE
T ss_pred             eccc--ccccccccccccccccccccc-----------ceeeeee-cccccccccccccce
Confidence            9876  578888999999999999875           3899999 999999999987643

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-29  Score=206.64  Aligned_cols=254  Identities=13%  Similarity=0.080  Sum_probs=185.2

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc---------cCccEEEEEEcCCC-CeEEEEecC
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI---------SSSMCLCLEWNPSA-TSITVGLSD  126 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~---------~~~~v~~~~~~~~~-~~l~~~~~d  126 (331)
                      +..+..+|.+.|++|+|+|+    +++|++|+.||++ +|++.....         |..+|.+++|+|++ ..|++|+.|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~----~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPS----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGG----GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             eEEcCCCCCCCEEEEEEeCC----CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            34456889999999999999    8999999999999 999865432         68899999999875 478999999


Q ss_pred             CeEEEEEccccceeeeeeeecccc-eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec-cc--CCCcceEEEE
Q 020107          127 GSVSIVSVVESQLEVLQQWKAHEF-ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN-SK--IHKMGVCCIA  202 (331)
Q Consensus       127 g~i~i~d~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~--~~~~~v~~~~  202 (331)
                      |.|++|++.....  ......+.. ......+.+ +...+++++.++.+++||++.......... ..  ..........
T Consensus        79 ~~v~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d1yfqa_          79 GEILKVDLIGSPS--FQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT  155 (342)
T ss_dssp             SCEEEECSSSSSS--EEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred             cceeeeecccccc--ccccccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence            9999999987654  223332333 333444444 778999999999999999987654333222 01  1223345566


Q ss_pred             EecCCCCEEEEEecCCeEEEEEecCCCCCcee-eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc----c-
Q 020107          203 SIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE-TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA----E-  276 (331)
Q Consensus       203 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-  276 (331)
                      +.+ .+..+++++.|+.|++||++........ ....+...+.+..+.+.....+++++.++.+.+|.+.....    . 
T Consensus       156 ~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~  234 (342)
T d1yfqa_         156 MDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK  234 (342)
T ss_dssp             EEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred             eec-cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccc
Confidence            677 7889999999999999999875433222 12344556777777776656777777788888887765320    1 


Q ss_pred             --eeE------EeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          277 --VLE------TYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       277 --~~~------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                        ...      ...+|...|++++|+|++         ++||||+ .||.|++||++++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~~---------~~lasg~-~Dg~v~vWD~~~~~~  285 (342)
T d1yfqa_         235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRH---------KFLYTAG-SDGIISCWNLQTRKK  285 (342)
T ss_dssp             CEEEECCCCCTTCCSSCCCEEEEEECTTT---------CCEEEEE-TTSCEEEEETTTTEE
T ss_pred             cceeeeeeeccCCCcccccceeEEecCCc---------cEEEEEC-CCCEEEEEECCCCcE
Confidence              111      122566789999999998         6999999 999999999988643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=7.9e-29  Score=205.83  Aligned_cols=269  Identities=12%  Similarity=-0.025  Sum_probs=192.9

Q ss_pred             Eeeec-CCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC-c
Q 020107           15 VEFCP-QDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD-G   92 (331)
Q Consensus        15 v~~~~-~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-g   92 (331)
                      -.|+| ++   +++|+++           +|.|++|++.++.  ...+  .|...|.+++|+|+    ++.|++++.+ |
T Consensus         8 ~~fSP~dG---~~~a~~~-----------~g~v~v~d~~~~~--~~~~--~~~~~v~~~~~spD----g~~l~~~~~~~g   65 (360)
T d1k32a3           8 EDFSPLDG---DLIAFVS-----------RGQAFIQDVSGTY--VLKV--PEPLRIRYVRRGGD----TKVAFIHGTREG   65 (360)
T ss_dssp             EEEEECGG---GCEEEEE-----------TTEEEEECTTSSB--EEEC--SCCSCEEEEEECSS----SEEEEEEEETTE
T ss_pred             ccccCCCC---CEEEEEE-----------CCeEEEEECCCCc--EEEc--cCCCCEEEEEECCC----CCEEEEEEcCCC
Confidence            45777 44   8999997           8899999998764  4443  68899999999999    8888776544 4


Q ss_pred             -cE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE
Q 020107           93 -GL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV  165 (331)
Q Consensus        93 -~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  165 (331)
                       .+ +|+..+++.     +...+.+++|+|++++|++++.++.+++|++.+++.  ...+..|...+.+++|+| ++++|
T Consensus        66 ~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~sp-dg~~l  142 (360)
T d1k32a3          66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--TVIERSREAMITDFTISD-NSRFI  142 (360)
T ss_dssp             EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSSSCCCCEEECT-TSCEE
T ss_pred             CEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccce--eeeeecccccccchhhcc-ceeee
Confidence             34 999988654     678899999999999999999999999999998764  566777888899999999 77777


Q ss_pred             EEE----------cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCce--
Q 020107          166 YTG----------SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVN--  233 (331)
Q Consensus       166 ~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--  233 (331)
                      +.+          ..++.+++||+.+++.... ..   +...+..+.|+| +++.|++++.++.+++||.........  
T Consensus       143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~---~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~  217 (360)
T d1k32a3         143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TT---ENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVV  217 (360)
T ss_dssp             EEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SC---SSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSC
T ss_pred             eeeccccccceeeccccceeeeccccCceeee-cc---cccccccccccC-CCCEEEEEeCCCceEcccccccceeeccc
Confidence            754          3456789999998764333 23   677889999999 999999999999999998654211000  


Q ss_pred             ---eeeee------------------------------------cCCceEEEEECCCC----------CC--eEEEEEec
Q 020107          234 ---ETSVC------------------------------------LGGGVWRIKHHPFI----------PG--LVLAACMH  262 (331)
Q Consensus       234 ---~~~~~------------------------------------~~~~v~~~~~~~~~----------~~--~~~~~~~~  262 (331)
                         .....                                    ..+....+...+++          ..  .++.++.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (360)
T d1k32a3         218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEK  297 (360)
T ss_dssp             BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCC
T ss_pred             cceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCC
Confidence               00000                                    01112223333321          00  01111123


Q ss_pred             CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          263 NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +.+++|++..   ...   ..|.+.|.+++|+||+         ++|++++ .||.|++||++++..
T Consensus       298 ~~i~~~d~~~---~~~---~~~~~~v~~~~~SpDG---------~~l~~~~-~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         298 GVLLKYDVKT---RKV---TEVKNNLTDLRLSADR---------KTVMVRK-DDGKIYTFPLEKPED  348 (360)
T ss_dssp             EEEEEEETTT---CCE---EEEEEEEEEEEECTTS---------CEEEEEE-TTSCEEEEESSCTTS
T ss_pred             CEEEEEECCC---CeE---EEecCCcCEEEECCCC---------CEEEEEE-CCCeEEEEECCCCCc
Confidence            3445555443   222   2345568999999999         7999999 999999999988753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-27  Score=195.66  Aligned_cols=237  Identities=15%  Similarity=0.191  Sum_probs=175.9

Q ss_pred             eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107           58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS  130 (331)
Q Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~  130 (331)
                      ...++++|.+.|.+ +++++    +++|++|+.||.+ +|++.+.+.      |...|.+++|+|  ++|++|+.|+.++
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~----g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~   80 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFC----GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLK   80 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEE----TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEE
T ss_pred             cCEEECCcCCceEE-EEEEC----CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceeccccc
Confidence            44456899998765 35566    6799999999999 999988664      688999999987  4899999999999


Q ss_pred             EEEccccceeeeeeeeccccee--------------------------------------EEEeeCCCCCcEEEEEcCCC
Q 020107          131 IVSVVESQLEVLQQWKAHEFEL--------------------------------------WATSFDVHQPHMVYTGSDDC  172 (331)
Q Consensus       131 i~d~~~~~~~~~~~~~~~~~~v--------------------------------------~~~~~~~~~~~~l~~~~~dg  172 (331)
                      +|+........  ....+...+                                      ......+ ....+++++.|+
T Consensus        81 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~  157 (342)
T d2ovrb2          81 VWNAETGECIH--TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDF  157 (342)
T ss_dssp             EEETTTTEEEE--EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETTS
T ss_pred             cccccccccee--cccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecc-ccceeeeecCCC
Confidence            99987643211  110000000                                      0111111 345678888899


Q ss_pred             eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC
Q 020107          173 KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI  252 (331)
Q Consensus       173 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  252 (331)
                      .+++||.+..+....+..   |...+..+.+   ++.++++++.||.|++||++.. +++.. ...|...+.++.+++  
T Consensus       158 ~i~~~d~~~~~~~~~~~~---~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~-~~~~~-~~~~~~~v~~~~~~~--  227 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQG---HTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG-NCIHT-LTGHQSLTSGMELKD--  227 (342)
T ss_dssp             CEEEEEGGGTEEEEEECC---CSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC-CEEEE-ECCCCSCEEEEEEET--
T ss_pred             eEEEeecccceeeEEEcC---cccccccccC---CCCEEEEEeCCCeEEEeecccc-eeeeE-ecccccceeEEecCC--
Confidence            999999988776666655   7776666555   6789999999999999999985 44443 578889999999886  


Q ss_pred             CCeEEEEEecCcEEEEEEcCcccceeEEee---cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          253 PGLVLAACMHNGFAVVKVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                       .++++++.++.+++|++...  +....+.   .|...+.++.+++           +++++++ .||+|++||++++.+
T Consensus       228 -~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~s~s-~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         228 -NILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQSAVTCLQFNK-----------NFVITSS-DDGTVKLWDLKTGEF  292 (342)
T ss_dssp             -TEEEEEETTSCEEEEETTTC--CEEEEECSTTSCSSCEEEEEECS-----------SEEEEEE-TTSEEEEEETTTCCE
T ss_pred             -CEEEEEcCCCEEEEEecccc--cccccccccceeeeceeecccCC-----------CeeEEEc-CCCEEEEEECCCCCE
Confidence             57888888899999998774  4445554   3566777777654           4899999 999999999998754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.6e-25  Score=175.82  Aligned_cols=229  Identities=16%  Similarity=0.240  Sum_probs=178.8

Q ss_pred             eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107           63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV  135 (331)
Q Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  135 (331)
                      ..|...|+|++|  +    +++|++|+.||.+ +|++.+.+.      |...|.+++|  ++++|++|+.|+.|++|++.
T Consensus        12 ~~~~~~V~c~~~--d----~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          12 SETSKGVYCLQY--D----DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             CSSCCCEEEEEC--C----SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             CCCCCCEEEEEE--c----CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            557788998765  5    6699999999999 999987654      7889999987  56899999999999999999


Q ss_pred             ccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107          136 ESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      .+..  ......+.....  .+.+ ....++++..++.+++||...............|...+..+.+.+   ..+++++
T Consensus        84 ~~~~--~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s  155 (293)
T d1p22a2          84 TGEM--LNTLIHHCEAVL--HLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSAS  155 (293)
T ss_dssp             SCCE--EEEECCCCSCEE--EEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEE
T ss_pred             cccc--cccccccccccc--cccc-cccceeecccccceeEeeccccccccccccccccccccccceecc---ccccccc
Confidence            8754  333333333332  3333 456788999999999999998775544444455888898888764   6788999


Q ss_pred             cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107          216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR  295 (331)
Q Consensus       216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  295 (331)
                      .|+.|++||+++. +++.. +..+...+..+.+++   ..+++++.++.+++|++..  ...+..+.+|...+..+  ++
T Consensus       156 ~d~~i~~~d~~~~-~~~~~-~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v~~~--~~  226 (293)
T d1p22a2         156 GDRTIKVWNTSTC-EFVRT-LNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC--GACLRVLEGHEELVRCI--RF  226 (293)
T ss_dssp             TTSEEEEEETTTC-CEEEE-EECCSSCEEEEEEET---TEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEE--EC
T ss_pred             CCCceeeecCCCC-cEEEE-EcccccccccccCCC---CeEEEecCCCEEEEEeccc--ceeeeeecccceeeeec--cc
Confidence            9999999999985 44443 567888898888875   5688888899999999877  57778888888887654  44


Q ss_pred             CCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          296 GRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       296 ~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +.         .+|++++ .||.|++||+.+
T Consensus       227 ~~---------~~l~sg~-~dg~i~iwd~~~  247 (293)
T d1p22a2         227 DN---------KRIVSGA-YDGKIKVWDLVA  247 (293)
T ss_dssp             CS---------SEEEEEE-TTSCEEEEEHHH
T ss_pred             cc---------eEEEEEc-CCCEEEEEECCC
Confidence            55         5899999 999999999754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.9e-26  Score=181.43  Aligned_cols=225  Identities=12%  Similarity=0.093  Sum_probs=168.8

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      ..+.++.+++.    ..+++++          .|+++++|++...+         ....+..+.++++    +..++++.
T Consensus        47 ~~V~~~~~~~~----~~~~s~s----------~D~~v~~w~~~~~~---------~~~~~~~~~~~~~----~~~~~~~~   99 (287)
T d1pgua2          47 NLIVSLDNSKA----QEYSSIS----------WDDTLKVNGITKHE---------FGSQPKVASANND----GFTAVLTN   99 (287)
T ss_dssp             SCEEEEECCST----TCCEEEE----------TTTEEEETTEEEEE---------CSSCEEEEEECSS----SEEEEEET
T ss_pred             CCEEEEEecCC----CeEEEEe----------eccccccccccccc---------cccceeeeeeccC----CceEEEee
Confidence            34566666543    3567776          69999999876532         2345677888888    77788777


Q ss_pred             CCccEEEecCCCccc-----CccEEEEEEcCCCCeEEEEecCC-eEEEEEccccceeeeeeeecccceeEEEeeCCCCCc
Q 020107           90 ADGGLLRDITGEKIS-----SSMCLCLEWNPSATSITVGLSDG-SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH  163 (331)
Q Consensus        90 ~dg~iiw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (331)
                      .++..+|+....+..     ...  ..+++++++.+++++.++ .+++|++...+.. ......+...+++++|+| ++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~-~~~  175 (287)
T d1pgua2         100 DDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS-FDLKTPLRAKPSYISISP-SET  175 (287)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEE-EECSSCCSSCEEEEEECT-TSS
T ss_pred             cccceeeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeecccccee-eeeeeccCCceeEEEecc-Ccc
Confidence            766567777665431     223  345667788888888764 7999998765431 222234777899999999 889


Q ss_pred             EEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC---------CCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107          164 MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS---------DSNTLLTGSYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~l~~~~~d~~i~iwd~~~~~~~~~~  234 (331)
                      +|++++.||.|++||+.+++....  ....|...|.+++|+|.         ++.+|++|+.|++|++||+++..+.+..
T Consensus       176 ~l~~g~~dg~i~i~d~~~~~~~~~--~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~  253 (287)
T d1pgua2         176 YIAAGDVMGKILLYDLQSREVKTS--RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA  253 (287)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEC--CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred             ccccccccccccceeecccccccc--cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE
Confidence            999999999999999998764332  12349999999999872         3568999999999999999875444443


Q ss_pred             eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          235 TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       235 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                       ..+|...|++++|+|+  +.+++++.|+.+++|++
T Consensus       254 -~~~h~~~V~~v~~~~~--~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         254 -LNAHKDGVNNLLWETP--STLVSSGADACIKRWNV  286 (287)
T ss_dssp             -TTSSTTCEEEEEEEET--TEEEEEETTSCEEEEEE
T ss_pred             -eCCCCCCeEEEEECCC--CEEEEEECCCeEEEEEE
Confidence             5689999999999998  67899999999999986

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=5.7e-22  Score=159.93  Aligned_cols=258  Identities=11%  Similarity=0.120  Sum_probs=187.9

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE-EEEcCCccE-EEecCCCcc-----cCccEEEEEEc
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL-AQADADGGL-LRDITGEKI-----SSSMCLCLEWN  114 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~  114 (331)
                      .++.|.+||+++.+ .++.+ . ....+..++|+|+    +++| ++++.++.+ +|++.+.+.     ....+..+.|+
T Consensus        10 ~~~~v~v~D~~t~~-~~~~i-~-~g~~p~~va~spd----G~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~   82 (301)
T d1l0qa2          10 ESDNISVIDVTSNK-VTATI-P-VGSNPMGAVISPD----GTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS   82 (301)
T ss_dssp             TTTEEEEEETTTTE-EEEEE-E-CSSSEEEEEECTT----SSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred             CCCEEEEEECCCCe-EEEEE-E-CCCCceEEEEeCC----CCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccc
Confidence            69999999999886 33333 2 2355789999999    8876 567788888 999988754     23456889999


Q ss_pred             CCCCeEEE-EecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC
Q 020107          115 PSATSITV-GLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI  193 (331)
Q Consensus       115 ~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  193 (331)
                      +++..+++ +..++.+.+|+..+++.  ...+.. .....++.|+|+...+++++..++.+.+|+..+......+..   
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  156 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTV--AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV---  156 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEE--EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---
T ss_pred             cccccccccccccceeeeccccccee--eeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc---
Confidence            99987655 45688999999988754  555554 446788999995555567777889999999998876666654   


Q ss_pred             CCcceEEEEEecCCCCEEEEEecC-CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe--cCcEEEEEE
Q 020107          194 HKMGVCCIASIPSDSNTLLTGSYD-EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM--HNGFAVVKV  270 (331)
Q Consensus       194 ~~~~v~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~  270 (331)
                       ...+..+.++| ++..+++++.+ +.+.+|+.... .....  ......+..+++++++...+++...  .+.+.+|++
T Consensus       157 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~  231 (301)
T d1l0qa2         157 -GRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTN-SVIDT--VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (301)
T ss_dssp             -CSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTT-EEEEE--EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             -CCCceEEEeec-cccceeeecccccccccccccce-eeeec--ccccCCcceeeccccccccccccccceeeeeeeeec
Confidence             55688999999 77777777655 56666766553 33333  5566778899999998444444332  245667766


Q ss_pred             cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ..  ++.+..+..+ ..+.+++|+|++.        .++++++ .|+.|++||++++.+
T Consensus       232 ~t--~~~~~~~~~~-~~~~~va~spdg~--------~l~va~~-~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         232 GT--NKITARIPVG-PDPAGIAVTPDGK--------KVYVALS-FCNTVSVIDTATNTI  278 (301)
T ss_dssp             TT--TEEEEEEECC-SSEEEEEECTTSS--------EEEEEET-TTTEEEEEETTTTEE
T ss_pred             CC--CeEEEEEcCC-CCEEEEEEeCCCC--------EEEEEEC-CCCeEEEEECCCCeE
Confidence            55  5666666643 4679999999994        3457887 899999999998754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=2.3e-23  Score=172.50  Aligned_cols=184  Identities=10%  Similarity=0.076  Sum_probs=149.0

Q ss_pred             eEEEEcC-CCCCCCCeEEEEcCCccE-EEecCCCcc----cCccEEEEEEcCCCCeEEEEecCC--eEEEEEccccceee
Q 020107           70 FDIKWSP-VGGNAGPFLAQADADGGL-LRDITGEKI----SSSMCLCLEWNPSATSITVGLSDG--SVSIVSVVESQLEV  141 (331)
Q Consensus        70 ~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~  141 (331)
                      ..-.||| +    ++++|+++. |.+ +|++.++..    |...|.+++|+|+|+.|++++.+.  .|++||.++++.  
T Consensus         6 ~~~~fSP~d----G~~~a~~~~-g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~--   78 (360)
T d1k32a3           6 FAEDFSPLD----GDLIAFVSR-GQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA--   78 (360)
T ss_dssp             GEEEEEECG----GGCEEEEET-TEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE--
T ss_pred             hcccccCCC----CCEEEEEEC-CeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE--
Confidence            4567999 7    889998875 567 999987654    688899999999999988776643  799999988753  


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe------
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS------  215 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------  215 (331)
                       ..+..|...+.+++|+| ++++|++++.++.+++|++.+++....+..   |...+.+++|+| ++++|+.+.      
T Consensus        79 -~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sp-dg~~la~~~~~~~~~  152 (360)
T d1k32a3          79 -EKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERS---REAMITDFTISD-NSRFIAYGFPLKHGE  152 (360)
T ss_dssp             -EECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSSCCCCEEECT-TSCEEEEEEEECSST
T ss_pred             -EEeeCCCceEEeeeecc-cccccceeccccccccccccccceeeeeec---ccccccchhhcc-ceeeeeeeccccccc
Confidence             45667899999999999 889999999999999999999887777766   888999999999 999988654      


Q ss_pred             ----cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          216 ----YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       216 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                          .++.+++||+.+. +...  ...+...+..++|+|++ ..++..+.++.+.+|+.
T Consensus       153 ~~~~~~~~~~v~d~~~~-~~~~--~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         153 TDGYVMQAIHVYDMEGR-KIFA--ATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             TCSCCEEEEEEEETTTT-EEEE--CSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECS
T ss_pred             eeeccccceeeeccccC-ceee--ecccccccccccccCCC-CEEEEEeCCCceEcccc
Confidence                3456999999874 3333  25677889999999997 56666666666666654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=2.6e-22  Score=170.45  Aligned_cols=265  Identities=8%  Similarity=-0.036  Sum_probs=170.2

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCL  109 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~  109 (331)
                      .+|.|+|||+.+.+ .+..+ ..| ..+..++|+|+    +++|++++.|+.+ +|++.+.+.           |...+.
T Consensus        40 ~dg~v~vwD~~t~~-~~~~l-~~g-~~~~~vafSPD----Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          40 DAGQIALVDGDSKK-IVKVI-DTG-YAVHISRMSAS----GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             TTTEEEEEETTTCS-EEEEE-ECC-SSEEEEEECTT----SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             CCCEEEEEECCCCc-EEEEE-eCC-CCeeEEEECCC----CCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            79999999999986 44544 444 46899999999    9999999999999 999987653           334456


Q ss_pred             EEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeeccccee-----------EEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107          110 CLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFEL-----------WATSFDVHQPHMVYTGSDDCKFSGW  177 (331)
Q Consensus       110 ~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~l~~~~~dg~i~i~  177 (331)
                      +++|+|||+++++++ .++.+++||..+++.  ...+..+...+           ..+..+++....+.+....+.+.++
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP--KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCE--EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccce--eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            777889999876655 699999999998754  44444444333           3444454333333334444555555


Q ss_pred             EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCe
Q 020107          178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGL  255 (331)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~  255 (331)
                      +............  .+...+..+.++| ++++++++. .+..+.+++..+. +.+.... ..+......+.+.+.+.+.
T Consensus       191 ~~~~~~~~~~~~~--~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (426)
T d1hzua2         191 NYKDIDNLTVTSI--GAAPFLADGGWDS-SHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANFVHPKYGP  266 (426)
T ss_dssp             ECSSSSSCEEEEE--ECCSSEEEEEECT-TSCEEEEEETTCSEEEEEETTTT-EEEEEEECSSCCCCSCCEEEEETTTEE
T ss_pred             EeccccceeeEEe--ccCCccEeeeECC-CCcEEEeeeecccceeeeecccc-cEEEEeccCCcccccceeeeecCCCCc
Confidence            5554443222211  2677889999999 777766665 5667889998875 3222211 1111112222222222122


Q ss_pred             EEEEE--ecCcEEEEEEcC-----cccceeEEeecCCcceeeeeecCCCCcccccccCcEEE-------EeecCCCeEEE
Q 020107          256 VLAAC--MHNGFAVVKVGG-----EKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVA-------TCSFYDRLLRI  321 (331)
Q Consensus       256 ~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-------s~~~~d~~i~i  321 (331)
                      ..+..  .++.+..+....     ...+...++.+|...+..++|+|++         ++|+       +++ .|++|+|
T Consensus       267 ~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg---------~~l~v~~~~~~s~~-~~~tv~v  336 (426)
T d1hzua2         267 VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS---------SHLYVDTTFNPDAR-ISQSVAV  336 (426)
T ss_dssp             EEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC---------SEEEECCTTCSSHH-HHTCEEE
T ss_pred             eEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC---------ceEEEeecCCCCcc-cCCEEEE
Confidence            22222  122323333222     1257788899999999999999999         5777       456 7899999


Q ss_pred             EcCCCccc
Q 020107          322 WMPESDCL  329 (331)
Q Consensus       322 W~~~~~~~  329 (331)
                      ||++++..
T Consensus       337 wd~~t~~~  344 (426)
T d1hzua2         337 FDLKNLDA  344 (426)
T ss_dssp             EETTCTTS
T ss_pred             EECCCCCc
Confidence            99988753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.1e-22  Score=167.31  Aligned_cols=272  Identities=9%  Similarity=-0.002  Sum_probs=183.8

Q ss_pred             eeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE-EEEcCCccE
Q 020107           16 EFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL-AQADADGGL   94 (331)
Q Consensus        16 ~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i   94 (331)
                      ++++.+   ++|++++          .++.|.+||+++.+ .+..+.-.|...+.+++|+|+    ++++ +++..++.+
T Consensus         3 a~~~~~---~~l~~~~----------~~~~v~v~D~~t~~-~~~t~~~~~~~~p~~l~~spD----G~~l~v~~~~~~~v   64 (346)
T d1jmxb_           3 ALKAGH---EYMIVTN----------YPNNLHVVDVASDT-VYKSCVMPDKFGPGTAMMAPD----NRTAYVLNNHYGDI   64 (346)
T ss_dssp             CCCTTC---EEEEEEE----------TTTEEEEEETTTTE-EEEEEECSSCCSSCEEEECTT----SSEEEEEETTTTEE
T ss_pred             cCCCCC---cEEEEEc----------CCCEEEEEECCCCC-EEEEEEcCCCCCcceEEECCC----CCEEEEEECCCCcE
Confidence            344444   8999999          79999999999885 444443345667899999999    7776 566678888


Q ss_pred             -EEecCCCccc------------CccEEEEEEcCCCCeEEEEe------------cCCeEEEEEccccceeeeeeeeccc
Q 020107           95 -LRDITGEKIS------------SSMCLCLEWNPSATSITVGL------------SDGSVSIVSVVESQLEVLQQWKAHE  149 (331)
Q Consensus        95 -iw~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~  149 (331)
                       +|++.+.+..            ...+..++|+|+|++++++.            .++.+.+|+..+++...........
T Consensus        65 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  144 (346)
T d1jmxb_          65 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP  144 (346)
T ss_dssp             EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred             EEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc
Confidence             9999876541            12345789999999988775            4678899998876542222222223


Q ss_pred             ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec------------------------
Q 020107          150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP------------------------  205 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------------  205 (331)
                      ..+..+.+++ ++.++++   ++.+.+||+.+++....+..   + ..+..+.++|                        
T Consensus       145 ~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (346)
T d1jmxb_         145 RQVYLMRAAD-DGSLYVA---GPDIYKMDVKTGKYTVALPL---R-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF  216 (346)
T ss_dssp             SSCCCEEECT-TSCEEEE---SSSEEEECTTTCCEEEEECS---T-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred             CceEEEEecC-CCEEEEe---CCcceEEEccCCCEEEEEec---C-CCccceEEeccccEEEEEecCCCceEeeeeeeee
Confidence            3455666665 5555544   25588999988776555433   1 1111222222                        


Q ss_pred             -CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107          206 -SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH  284 (331)
Q Consensus       206 -~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  284 (331)
                       .....++++..+..+.+||+.+. .........+...+..+.+++++ ..+ +....+.+.+|+...  ++.+..+. +
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~v~v~d~~~--~~~~~~~~-~  290 (346)
T d1jmxb_         217 KDDKQDPATADLLYGYLSVDLKTG-KTHTQEFADLTELYFTGLRSPKD-PNQ-IYGVLNRLAKYDLKQ--RKLIKAAN-L  290 (346)
T ss_dssp             -------CCCEEEEEEEEEETTTC-CEEEEEEEECSSCEEEEEECSSC-TTE-EEEEESEEEEEETTT--TEEEEEEE-C
T ss_pred             ccCceeEeeccCCceEEEEECCCC-ceEEEEeecccceeEEEEEeCCC-CEE-EEecCCeEEEEECCC--CcEEEEEc-C
Confidence             13334455566677888998875 33334356788889999999986 333 344557788887765  46666655 4


Q ss_pred             CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ...+.+++|+||+         ++|++++ .|+.|++||++++..
T Consensus       291 ~~~~~~va~s~DG---------~~l~v~~-~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         291 DHTYYCVAFDKKG---------DKLYLGG-TFNDLAVFNPDTLEK  325 (346)
T ss_dssp             SSCCCEEEECSSS---------SCEEEES-BSSEEEEEETTTTEE
T ss_pred             CCCEEEEEEcCCC---------CEEEEEe-CCCcEEEEECccCCE
Confidence            4579999999999         6899999 899999999998653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=4.1e-21  Score=162.88  Aligned_cols=265  Identities=11%  Similarity=-0.055  Sum_probs=180.7

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCL  109 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~  109 (331)
                      .+|.|.|||..+.+ .+..+ ..+ ..+..++|+|+    +++|++++.|+.+ +|++.+.+.           +...+.
T Consensus        40 d~g~v~v~D~~t~~-v~~~~-~~g-~~~~~v~fSpD----G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          40 DAGQIALIDGSTYE-IKTVL-DTG-YAVHISRLSAS----GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             TTTEEEEEETTTCC-EEEEE-ECS-SCEEEEEECTT----SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             CCCEEEEEECCCCc-EEEEE-eCC-CCeeEEEECCC----CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            79999999999986 44444 444 46999999999    9999999999999 999887543           234455


Q ss_pred             EEEEcCCCCeE-EEEecCCeEEEEEccccceeeeeeeec-----------ccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107          110 CLEWNPSATSI-TVGLSDGSVSIVSVVESQLEVLQQWKA-----------HEFELWATSFDVHQPHMVYTGSDDCKFSGW  177 (331)
Q Consensus       110 ~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  177 (331)
                      +..|+|||++| +++..++.|++||..+++.  +..+..           +......+.++|.+..++++...++.|.+|
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEP--KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCE--EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccc--eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            56678899986 6677799999999998764  333332           344566788898555566788889999999


Q ss_pred             EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CCeEEEEEecCCCCCcee----------------------
Q 020107          178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DEYLRVWDVRSISKPVNE----------------------  234 (331)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~----------------------  234 (331)
                      |..+.+....... + +...+..+.|+| +++++++++. ++.+.++|.++.+ ....                      
T Consensus       191 d~~~~~~~~~~~i-~-~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~g  266 (432)
T d1qksa2         191 DYTDLNNLKTTEI-S-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGK-LVAIEDTGGQTPHPGRGANFVHPTFG  266 (432)
T ss_dssp             ETTCSSEEEEEEE-E-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTE-EEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred             EccCCCcceEEEE-c-ccCccccceECC-CCCEEEEeccccceEEEeecccce-EEEEeccCccccccCcccceecCCCC
Confidence            9988765544443 1 466789999999 8887766664 5678888876531 1100                      


Q ss_pred             --eee-------------------ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-------------------
Q 020107          235 --TSV-------------------CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-------------------  274 (331)
Q Consensus       235 --~~~-------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  274 (331)
                        ...                   .|...+....++|++ ..+++...++..++|......                   
T Consensus       267 ~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~  345 (432)
T d1qksa2         267 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTG  345 (432)
T ss_dssp             EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCC
T ss_pred             ceecccccCCceEEecccccccccccccEEEEEEEcCCC-CeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcc
Confidence              000                   111235556677765 445555556666666543211                   


Q ss_pred             ---cceeEE--------eecCCcceeeeeecCCCCcccccccCcEE-EEee---cCCCeEEEEcCCCccc
Q 020107          275 ---AEVLET--------YAKHGSLAYGADWQRGRSSLEGKRKNSLV-ATCS---FYDRLLRIWMPESDCL  329 (331)
Q Consensus       275 ---~~~~~~--------~~~h~~~v~~~~~~~~~~~~~~~~~~~~l-~s~~---~~d~~i~iW~~~~~~~  329 (331)
                         .+.+..        +..|...|..++|+|+|         +++ +|..   ..++.|+|||..+..+
T Consensus       346 ~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG---------~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         346 DGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDG---------TEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             SSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTS---------SEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             cccCCceEecccccccccCCCCCcEEEeEECCCC---------CEEEEEEecCCCCCCcEEEEECCCceE
Confidence               011111        22466789999999999         455 4431   0468999999988764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2e-20  Score=153.05  Aligned_cols=272  Identities=11%  Similarity=0.074  Sum_probs=182.3

Q ss_pred             CCCcEEEEeccCcccceEEe-EeeecCcEeEEEEcCCCCCCCCeEEE-EcCCccE-EEecCCCcc---------cCccEE
Q 020107           42 RNGSISLFNVNAEEKNLELL-YRMDTAGIFDIKWSPVGGNAGPFLAQ-ADADGGL-LRDITGEKI---------SSSMCL  109 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~dg~i-iw~~~~~~~---------~~~~v~  109 (331)
                      .++.|++|+++... .+..+ ...|.+.+..|+|+|+    +++|++ +..|+.+ +|++.....         ....+.
T Consensus        12 ~~~~I~v~~~~~~~-~l~~~~~~~~~~~v~~la~spD----G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_          12 ESQQIHVWNLNHEG-ALTLTQVVDVPGQVQPMVVSPD----KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             GGTEEEEEEECTTS-CEEEEEEEECSSCCCCEEECTT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             CCCcEEEEEEcCCC-CeEEEEEEcCCCCEeEEEEeCC----CCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            69999999998654 23222 2356788999999999    888854 5557888 898875432         234566


Q ss_pred             EEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEE-cCCCeEEEEEccCCCceee
Q 020107          110 CLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTG-SDDCKFSGWDIRESPFKLA  187 (331)
Q Consensus       110 ~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~  187 (331)
                      .++|+|+|++|++++. ++.|.+|+..............+...+.++.++| +++.++.+ ..+..+.+|+.........
T Consensus        87 ~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          87 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             EEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCccee
Confidence            7999999999988875 7789999988765444444555667788999999 55555554 4667899999887553322


Q ss_pred             eec---ccCCCcceEEEEEecCCCCEEEEE-ecCCeEEEEEecCCCCCceeeee--------ecCCceEEEEECCCCCCe
Q 020107          188 FQN---SKIHKMGVCCIASIPSDSNTLLTG-SYDEYLRVWDVRSISKPVNETSV--------CLGGGVWRIKHHPFIPGL  255 (331)
Q Consensus       188 ~~~---~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~  255 (331)
                      ...   ..........++|++ ++..++.. ...+...+|+.............        ........++++++++..
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eeceeeeeecCCCccEEEEec-cceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence            111   122455678999999 76666554 45677888887654333222111        123456778999998555


Q ss_pred             EEEEEecCcEEEEEEcCcccc-eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC--CCccc
Q 020107          256 VLAACMHNGFAVVKVGGEKAE-VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP--ESDCL  329 (331)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~--~~~~~  329 (331)
                      +++....+.+.+|.+...... .+.........+.+++|+|++         ++|++++..++.|++|++  +++.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDG---------k~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG---------KYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS---------SEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCC---------CEEEEEECCCCeEEEEEEECCCCcE
Confidence            555556677888888765322 222223344567889999999         565554426799999954  55543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=2.9e-21  Score=158.10  Aligned_cols=266  Identities=9%  Similarity=-0.018  Sum_probs=184.1

Q ss_pred             cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-ecCcEeEEEEcCCCCCCCCeE-EEEcCCccE-EEecCCC
Q 020107           25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-DTAGIFDIKWSPVGGNAGPFL-AQADADGGL-LRDITGE  101 (331)
Q Consensus        25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i-iw~~~~~  101 (331)
                      +||++++          .+++|++||+++.+ .+..+... +...+.+++|+|+    ++++ ++++.++.+ +||+.++
T Consensus         2 ~~~vt~~----------~d~~v~v~D~~s~~-~~~~i~~~~~~~~~~~i~~spD----g~~l~v~~~~~~~v~v~D~~t~   66 (337)
T d1pbyb_           2 DYILAPA----------RPDKLVVIDTEKMA-VDKVITIADAGPTPMVPMVAPG----GRIAYATVNKSESLVKIDLVTG   66 (337)
T ss_dssp             EEEEEEE----------TTTEEEEEETTTTE-EEEEEECTTCTTCCCCEEECTT----SSEEEEEETTTTEEEEEETTTC
T ss_pred             eEEEEEc----------CCCEEEEEECCCCe-EEEEEECCCCCCCccEEEECCC----CCEEEEEECCCCeEEEEECCCC
Confidence            6889998          79999999999876 34444222 2345889999999    8876 567788989 9999887


Q ss_pred             ccc-----------CccEEEEEEcCCCCeEEEEec------------CCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107          102 KIS-----------SSMCLCLEWNPSATSITVGLS------------DGSVSIVSVVESQLEVLQQWKAHEFELWATSFD  158 (331)
Q Consensus       102 ~~~-----------~~~v~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  158 (331)
                      +..           ...+..++|+|+++.++++..            +..+.+||..+++.  ...+. +...+..++|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~-~~~~~~~~~~s  143 (337)
T d1pbyb_          67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAFE-APRQITMLAWA  143 (337)
T ss_dssp             CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEEE-CCSSCCCEEEC
T ss_pred             cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE--EEecc-ccCCceEEEEc
Confidence            642           223457899999999888763            56788899987754  55555 34568889999


Q ss_pred             CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC------------------Cc--ceEEEEEecCCCCEEEEEecCC
Q 020107          159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH------------------KM--GVCCIASIPSDSNTLLTGSYDE  218 (331)
Q Consensus       159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------------~~--~v~~~~~~~~~~~~l~~~~~d~  218 (331)
                      | ++.++++++.  .+.+||..+++....+......                  ..  ......... +......+..++
T Consensus       144 ~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  219 (337)
T d1pbyb_         144 R-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK-DIDPADPTAYRT  219 (337)
T ss_dssp             T-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT-TSCTTSGGGEEE
T ss_pred             C-CCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeee-ccceeeecccCc
Confidence            8 7788888764  4678999887655444331000                  00  000111111 222223334456


Q ss_pred             eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107          219 YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS  298 (331)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  298 (331)
                      .+.+||..++. ........+...+..+.++|++  .++.+ .++.+.+|++..  ++.+..+. +...+.+++|+|++ 
T Consensus       220 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~v~d~~~--~~~~~~~~-~~~~~~~~~~s~dG-  291 (337)
T d1pbyb_         220 GLLTMDLETGE-MAMREVRIMDVFYFSTAVNPAK--TRAFG-AYNVLESFDLEK--NASIKRVP-LPHSYYSVNVSTDG-  291 (337)
T ss_dssp             EEEEEETTTCC-EEEEEEEECSSCEEEEEECTTS--SEEEE-EESEEEEEETTT--TEEEEEEE-CSSCCCEEEECTTS-
T ss_pred             cEEEEEcCCCc-EEEEEecCCCcceEEEEecccc--eEEEE-ccccEEEEECCC--CcEEEEEc-CCCCEEEEEECCCC-
Confidence            79999998863 3333346778888999999985  33333 357788898876  46666654 56678999999999 


Q ss_pred             cccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          299 SLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       299 ~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                              ++|++++ .|+.|++||+++...
T Consensus       292 --------~~l~v~~-~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         292 --------STVWLGG-ALGDLAAYDAETLEK  313 (337)
T ss_dssp             --------CEEEEES-BSSEEEEEETTTCCE
T ss_pred             --------CEEEEEe-CCCcEEEEECCCCcE
Confidence                    6888898 899999999988653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=2.8e-20  Score=157.74  Aligned_cols=292  Identities=9%  Similarity=-0.008  Sum_probs=190.6

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccce-EEe--EeeecCcEeEEEEcCCCCCCCC
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNL-ELL--YRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~-~~~--~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      .....+..|+|+|++   ++|++++          .||.|++||+.+.+... ..+  ..+|...+.+++|+|+    ++
T Consensus        59 ~~g~~~~~vafSPDG---k~l~~~~----------~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spD----G~  121 (426)
T d1hzua2          59 DTGYAVHISRMSASG---RYLLVIG----------RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE----DR  121 (426)
T ss_dssp             ECCSSEEEEEECTTS---CEEEEEE----------TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCT----TT
T ss_pred             eCCCCeeEEEECCCC---CEEEEEe----------CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCC----CC
Confidence            344467788888877   8999988          79999999998875221 111  2346666888889999    88


Q ss_pred             eEEEE-cCCccE-EEecCCCcc-----------------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeee
Q 020107           84 FLAQA-DADGGL-LRDITGEKI-----------------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQ  143 (331)
Q Consensus        84 ~l~~~-~~dg~i-iw~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~  143 (331)
                      +|+++ ..++.+ +|+..+...                 +......+.+++++..++.... .+.+.+++........+ 
T Consensus       122 ~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~-  200 (426)
T d1hzua2         122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-  200 (426)
T ss_dssp             EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEE-
T ss_pred             EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceee-
Confidence            76555 467777 999887653                 1233455666777766555444 45666666655432222 


Q ss_pred             eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE--EEEEecCCeEE
Q 020107          144 QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT--LLTGSYDEYLR  221 (331)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~~~~~d~~i~  221 (331)
                      ....+...+..++|+|.+..++++...+..+.++|..+++....+.. ..+......+.+.+.....  .++.+.|+.+.
T Consensus       201 ~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  279 (426)
T d1hzua2         201 TSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV-GKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS  279 (426)
T ss_dssp             EEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC-SSCCCCSCCEEEEETTTEEEEEEECTTTCEEE
T ss_pred             EEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc-CCcccccceeeeecCCCCceEEeccCCCceEE
Confidence            23356778899999995544555666778899999998887666554 2123333334443312222  23344678888


Q ss_pred             EEEecCCCC-----CceeeeeecCCceEEEEECCCCCCeEEEE-------EecCcEEEEEEcCcccceeEEe--------
Q 020107          222 VWDVRSISK-----PVNETSVCLGGGVWRIKHHPFIPGLVLAA-------CMHNGFAVVKVGGEKAEVLETY--------  281 (331)
Q Consensus       222 iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--------  281 (331)
                      +|+......     .....+..|...+..++|+|++ ..+++.       ..++.+++|++...  +...++        
T Consensus       280 ~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~t~--~~~~~~~~~~~~~~  356 (426)
T d1hzua2         280 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNL--DAKYQVLPIAEWAD  356 (426)
T ss_dssp             EEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC-SEEEECCTTCSSHHHHTCEEEEETTCT--TSCCEEECHHHHHC
T ss_pred             EeeccccccccccceEeEEEecCCCceeEEEcCCCC-ceEEEeecCCCCcccCCEEEEEECCCC--CcCeEEeccchhcc
Confidence            888765321     1223357889999999999996 444432       23577899998763  333332        


Q ss_pred             -ecCCcceeeeeecCCCCcccccccCcEEEEe----ecCCCeEEEEcCCCccc
Q 020107          282 -AKHGSLAYGADWQRGRSSLEGKRKNSLVATC----SFYDRLLRIWMPESDCL  329 (331)
Q Consensus       282 -~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~----~~~d~~i~iW~~~~~~~  329 (331)
                       ..|...|..++|+|||.        .+++++    + .++.|+|||..+..+
T Consensus       357 ~~~~~~rv~~~~fSpDGk--------~i~vs~~~~~~-~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         357 LGEGAKRVVQPEYNKRGD--------EVWFSVWNGKN-DSSALVVVDDKTLKL  400 (426)
T ss_dssp             CCSSCCCEEEEEECSSSS--------EEEEEECCCTT-SCCEEEEEETTTTEE
T ss_pred             cCCCCccEEEEEECCCCC--------EEEEEEecCCC-CCCeEEEEECCCCeE
Confidence             34566799999999994        444554    3 689999999998753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=1.3e-18  Score=140.02  Aligned_cols=245  Identities=14%  Similarity=0.133  Sum_probs=172.2

Q ss_pred             eeeecCcceeEeeecCCCCCcEEE-EEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107            5 HCELDGNADAVEFCPQDSYHHVLA-ASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP   83 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~~~~~la-~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   83 (331)
                      .+.+...+..++++|++   ++|+ ++.          .++.|++||+.+.+ .+..+ ..+ ..+..+.|+++    +.
T Consensus        27 ~i~~g~~p~~va~spdG---~~l~v~~~----------~~~~i~v~d~~t~~-~~~~~-~~~-~~~~~~~~~~~----~~   86 (301)
T d1l0qa2          27 TIPVGSNPMGAVISPDG---TKVYVANA----------HSNDVSIIDTATNN-VIATV-PAG-SSPQGVAVSPD----GK   86 (301)
T ss_dssp             EEECSSSEEEEEECTTS---SEEEEEEG----------GGTEEEEEETTTTE-EEEEE-ECS-SSEEEEEECTT----SS
T ss_pred             EEECCCCceEEEEeCCC---CEEEEEEC----------CCCEEEEEECCCCc-eeeee-ecc-ccccccccccc----cc
Confidence            34555677889999887   6664 444          58999999998875 33333 333 35789999999    66


Q ss_pred             eEEE-EcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           84 FLAQ-ADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        84 ~l~~-~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      .+++ +..++.+ +|+..+.+.     +.....++.|+|+++.++.+ ..++.+.+|+..+.+.  ...+.. ...+..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~  163 (301)
T d1l0qa2          87 QVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV--INTVSV-GRSPKGI  163 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEEC-CSSEEEE
T ss_pred             cccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccce--eeeccc-CCCceEE
Confidence            5554 4555555 888877654     34567889999999987554 5588999999988754  445543 3457889


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec---CCeEEEEEecCCCCCc
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY---DEYLRVWDVRSISKPV  232 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~  232 (331)
                      +++|+...++++...++.+.+|+....+......    ....+..+.+++ ++..+++++.   ++.|++||+.+. +.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~-~~~  237 (301)
T d1l0qa2         164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTN-KIT  237 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTT-EEE
T ss_pred             Eeeccccceeeecccccccccccccceeeeeccc----ccCCcceeeccc-cccccccccccceeeeeeeeecCCC-eEE
Confidence            9998444444455556778888887766544444    356678899999 8877766543   468999999985 444


Q ss_pred             eeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107          233 NETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA  282 (331)
Q Consensus       233 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (331)
                      ..  ..+...+..++|+|+++.++++.+.++.+.+|++..  ++++.++.
T Consensus       238 ~~--~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t--~~~~~~~~  283 (301)
T d1l0qa2         238 AR--IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT--NTITATMA  283 (301)
T ss_dssp             EE--EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEE
T ss_pred             EE--EcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC--CeEEEEEe
Confidence            44  455677899999999843445555677888898866  56676665

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.1e-17  Score=141.49  Aligned_cols=185  Identities=10%  Similarity=-0.015  Sum_probs=136.3

Q ss_pred             eEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee---ecccceeEE
Q 020107           84 FLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW---KAHEFELWA  154 (331)
Q Consensus        84 ~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~v~~  154 (331)
                      ++++.+.+|.+ +||..+.++     ....+..++|+|||+++++++.||.|++||+.+++......+   ..|...+.+
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            46899999999 999998775     234689999999999999999999999999988764434433   345666777


Q ss_pred             EeeCCCCCcE-EEEEcCCCeEEEEEccCCCceeeeecc--------cCCCcceEEEEEecCCCCE-EEEEecCCeEEEEE
Q 020107          155 TSFDVHQPHM-VYTGSDDCKFSGWDIRESPFKLAFQNS--------KIHKMGVCCIASIPSDSNT-LLTGSYDEYLRVWD  224 (331)
Q Consensus       155 ~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~-l~~~~~d~~i~iwd  224 (331)
                      .+|+| ++++ +++++.++.|++||..+++....+...        ..+......+.++| ++.. +++...++.|.+||
T Consensus       114 ~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         114 KMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             CSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEE
T ss_pred             cccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEE
Confidence            88888 6665 578889999999999998876655430        11345677889999 6655 46667789999999


Q ss_pred             ecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcC
Q 020107          225 VRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGG  272 (331)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  272 (331)
                      ..+.+ ........+...+..++|+|++ ..+++++ ..+.+.+++...
T Consensus       192 ~~~~~-~~~~~~i~~g~~~~~~~~spdg-~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         192 YTDLN-NLKTTEISAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             TTCSS-EEEEEEEECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTT
T ss_pred             ccCCC-cceEEEEcccCccccceECCCC-CEEEEeccccceEEEeeccc
Confidence            88753 3332235667788999999998 4444444 444555555443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.80  E-value=2.6e-16  Score=130.49  Aligned_cols=286  Identities=9%  Similarity=-0.054  Sum_probs=179.5

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ   87 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   87 (331)
                      .++++..++++|++   ..+++..-..     .+..+.|.+||..+.+ .+..+ ..+.  ...++|+|+    +++|++
T Consensus        19 ~~~p~~~~a~spdg---~~~~~~~~~~-----~~~~~~v~v~D~~tg~-~~~~~-~~~~--~~~~a~SpD----G~~l~v   82 (373)
T d2madh_          19 ADGPTNDEAPGADG---RRSYINLPAH-----HSAIIQQWVLDAGSGS-ILGHV-NGGF--LPNPVAAHS----GSEFAL   82 (373)
T ss_pred             CCCCccccccCCCC---CEEEEEcccc-----cCCCceEEEEECCCCC-EEEEE-eCCC--CccEEEcCC----CCEEEE
Confidence            45677888888877   6665542100     0135679999988775 34333 3333  347999999    889988


Q ss_pred             EcC----------CccE-EEecCCCccc------Cc-------cEEEEEEcCCCCeEEEEe--cCCeEEEEEccccceee
Q 020107           88 ADA----------DGGL-LRDITGEKIS------SS-------MCLCLEWNPSATSITVGL--SDGSVSIVSVVESQLEV  141 (331)
Q Consensus        88 ~~~----------dg~i-iw~~~~~~~~------~~-------~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~  141 (331)
                      ++.          ++.+ +||..+.+..      ..       ....+.|+++++.+++..  .++.+.+|+....+.  
T Consensus        83 a~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~--  160 (373)
T d2madh_          83 ASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD--  160 (373)
T ss_pred             EeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE--
Confidence            754          4556 9999887652      11       124578888988766654  356788888876543  


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc---cCCCcceEEEEEecCCCCEEEEEecCC
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS---KIHKMGVCCIASIPSDSNTLLTGSYDE  218 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~  218 (331)
                      .    .+.....++.++|.....+++.+.|+.+.+||...+.........   .........+.+.+ ++ .++..+.++
T Consensus       161 ~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~  234 (373)
T d2madh_         161 D----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-SG-RIVWPVYSG  234 (373)
T ss_pred             E----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-Cc-eEEEecCCc
Confidence            2    223345688899866667788999999999999887655444320   11122234445554 44 555666789


Q ss_pred             eEEEEEecCCCCCceeeeeec----------CCceEEEEECCCCCC---------eEEEEEecCcEEEEEEcCcccceeE
Q 020107          219 YLRVWDVRSISKPVNETSVCL----------GGGVWRIKHHPFIPG---------LVLAACMHNGFAVVKVGGEKAEVLE  279 (331)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  279 (331)
                      .+.+|+...............          ......++++|++..         .++.....+.+.+|+...  ++.+.
T Consensus       235 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t--~~~~~  312 (373)
T d2madh_         235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--GQTSS  312 (373)
T ss_pred             eEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC--CcEEE
Confidence            999999876422111111111          123344566665422         223333445555555544  56666


Q ss_pred             EeecCCcceeeeeecCCCCcccccccCc-EEEEeecCCCeEEEEcCCCccc
Q 020107          280 TYAKHGSLAYGADWQRGRSSLEGKRKNS-LVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       280 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      .+. +...+.+++|+||+.        . ++++++ .|+.|++||+.++..
T Consensus       313 ~~~-~~~~~~~~a~spDG~--------~~l~vt~~-~d~~v~v~D~~tg~~  353 (373)
T d2madh_         313 QIS-LGHDVDAISVAQDGG--------PDLYALSA-GTEVLHIYDAGAGDQ  353 (373)
T ss_pred             Eec-CCCCeeEEEECCCCC--------EEEEEEeC-CCCeEEEEECCCCCE
Confidence            554 566789999999983        3 456777 899999999998865

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=8.4e-16  Score=126.36  Aligned_cols=276  Identities=12%  Similarity=0.043  Sum_probs=164.3

Q ss_pred             CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc----------CC
Q 020107           22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD----------AD   91 (331)
Q Consensus        22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~d   91 (331)
                      |++..+++.......     .++.|.+||..+.+ .+..+ ..  +....++|+|+    +++|++++          .+
T Consensus        11 pdg~~~~v~~~~~~~-----~~~~v~v~D~~tg~-~~~~~-~~--g~~~~~a~SpD----g~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_          11 PDARRVYVNDPAHFA-----AVTQQFVIDGEAGR-VIGMI-DG--GFLPNPVVADD----GSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCTTEEEEEECGGGC-----SSEEEEEEETTTTE-EEEEE-EE--CSSCEEEECTT----SSCEEEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEEecccCC-----CcCeEEEEECCCCc-EEEEE-EC--CCCCceEEcCC----CCEEEEEeCCCccccccCCC
Confidence            334666665421111     36679999998875 34433 33  34447999999    88887654          36


Q ss_pred             ccE-EEecCCCccc-------------CccEEEEEEcCCCCeEEEEe--cCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107           92 GGL-LRDITGEKIS-------------SSMCLCLEWNPSATSITVGL--SDGSVSIVSVVESQLEVLQQWKAHEFELWAT  155 (331)
Q Consensus        92 g~i-iw~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  155 (331)
                      +.+ +||..+.+..             ......+.|+|+++.++++.  .+..+.+|+..+++.  +..+..+.... ..
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~  154 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF--KRMLDVPDCYH-IF  154 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEECCSEEE-EE
T ss_pred             CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE--eeEEecCCcce-Ee
Confidence            677 9999876542             12234678999999887765  467899999988754  44444322111 11


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec---ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCc
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN---SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPV  232 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  232 (331)
                      .   ......++.+.|+...++..........+..   ...+...+....+.+ ++..++.++.++.+.+|++.......
T Consensus       155 ~---~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~  230 (355)
T d2bbkh_         155 P---TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKF  230 (355)
T ss_dssp             E---EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEE
T ss_pred             e---cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEE
Confidence            1   1122233333444444444333222211111   011344455567777 77888889999999999998753222


Q ss_pred             eeeeeec----------CCceEEEEECCCCCCeEEEEEec---------CcEEEEEEcCcccceeEEeecCCcceeeeee
Q 020107          233 NETSVCL----------GGGVWRIKHHPFIPGLVLAACMH---------NGFAVVKVGGEKAEVLETYAKHGSLAYGADW  293 (331)
Q Consensus       233 ~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  293 (331)
                      ......+          ......++++|++...+++....         +.+.+|+...  ++.+.++.. ...+.+++|
T Consensus       231 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t--~~~~~~~~~-~~~~~~~a~  307 (355)
T d2bbkh_         231 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT--GERLAKFEM-GHEIDSINV  307 (355)
T ss_dssp             CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT--CCEEEEEEE-EEEECEEEE
T ss_pred             EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC--CcEEEEecC-CCCEEEEEE
Confidence            1111111          12334588889874444333222         2355666554  566666653 456889999


Q ss_pred             cCCCCcccccccCc-EEEEeecCCCeEEEEcCCCccc
Q 020107          294 QRGRSSLEGKRKNS-LVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       294 ~~~~~~~~~~~~~~-~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      +|++.        . ++++++ .|+.|++||++++..
T Consensus       308 spDG~--------~~l~v~~~-~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         308 SQDEK--------PLLYALST-GDKTLYIHDAESGEE  335 (355)
T ss_dssp             CCSSS--------CEEEEEET-TTTEEEEEETTTCCE
T ss_pred             cCCCC--------eEEEEEEC-CCCEEEEEECCCCCE
Confidence            99983        3 456777 899999999998864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=2.9e-16  Score=127.94  Aligned_cols=238  Identities=13%  Similarity=0.091  Sum_probs=160.3

Q ss_pred             cceeEeeecCCCCCcEE-EEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee-----cCcEeEEEEcCCCCCCCCe
Q 020107           11 NADAVEFCPQDSYHHVL-AASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD-----TAGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~l-a~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~   84 (331)
                      .+..++++|++   +++ ++++          .++.|.+||+.+++ .+..+ ..+     ...+..++|+|+    ++.
T Consensus        35 ~~~~i~~spDg---~~l~v~~~----------~~~~v~v~D~~t~~-~~~~~-~~~~~~~~~~~~~~v~~s~d----g~~   95 (337)
T d1pbyb_          35 TPMVPMVAPGG---RIAYATVN----------KSESLVKIDLVTGE-TLGRI-DLSTPEERVKSLFGAALSPD----GKT   95 (337)
T ss_dssp             CCCCEEECTTS---SEEEEEET----------TTTEEEEEETTTCC-EEEEE-ECCBTTEEEECTTCEEECTT----SSE
T ss_pred             CccEEEECCCC---CEEEEEEC----------CCCeEEEEECCCCc-EEEEE-ecCCCcccccceeeEEEcCC----CcE
Confidence            36688888876   666 5555          68999999999876 33322 322     234668999999    888


Q ss_pred             EEEEcCCccE-------------EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee
Q 020107           85 LAQADADGGL-------------LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK  146 (331)
Q Consensus        85 l~~~~~dg~i-------------iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  146 (331)
                      ++++..+...             +|+..+...     ....+..++|+|+++++++++.+  +.+||..+++.  ...+.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~--~~~~~  171 (337)
T d1pbyb_          96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTL--VEDKP  171 (337)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEE--EEEEC
T ss_pred             EEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcE--EEEee
Confidence            8888754433             677776553     24557789999999999998754  67899887654  33332


Q ss_pred             cccceeEEEeeCCC-----------------------CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEE
Q 020107          147 AHEFELWATSFDVH-----------------------QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIAS  203 (331)
Q Consensus       147 ~~~~~v~~~~~~~~-----------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  203 (331)
                      .+.. .....+.|.                       .......+..++.+.+||..++.......  ..+...+..+.+
T Consensus       172 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  248 (337)
T d1pbyb_         172 IQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV--RIMDVFYFSTAV  248 (337)
T ss_dssp             STTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE--EECSSCEEEEEE
T ss_pred             cCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe--cCCCcceEEEEe
Confidence            2111 111111110                       01111122345578899998876433222  226778889999


Q ss_pred             ecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec
Q 020107          204 IPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK  283 (331)
Q Consensus       204 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (331)
                      +| ++.+++.+  ++.|++||+.+. +.+..  ..+...+.+++|+|++ ..+++++.++.+.+|+...  .+.+.+++-
T Consensus       249 ~~-~~~~~~~~--~~~i~v~d~~~~-~~~~~--~~~~~~~~~~~~s~dG-~~l~v~~~~~~i~v~D~~t--~~~v~~i~~  319 (337)
T d1pbyb_         249 NP-AKTRAFGA--YNVLESFDLEKN-ASIKR--VPLPHSYYSVNVSTDG-STVWLGGALGDLAAYDAET--LEKKGQVDL  319 (337)
T ss_dssp             CT-TSSEEEEE--ESEEEEEETTTT-EEEEE--EECSSCCCEEEECTTS-CEEEEESBSSEEEEEETTT--CCEEEEEEC
T ss_pred             cc-cceEEEEc--cccEEEEECCCC-cEEEE--EcCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCC--CcEEEEEEC
Confidence            99 88877765  589999999985 55555  5677889999999998 6677777888899999876  466766653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.8e-14  Score=117.06  Aligned_cols=253  Identities=11%  Similarity=0.127  Sum_probs=164.2

Q ss_pred             eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-eeecCcEeEEEEcCCCCCCCCeE
Q 020107            7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-RMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      ...+.+..|+|+|++   ++|+++..         .++.|++|++......+.... ..+...+..++|+|+    +++|
T Consensus        34 ~~~~~v~~la~spDG---~~L~v~~~---------~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spD----g~~l   97 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDK---RYLYVGVR---------PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ----GQFV   97 (333)
T ss_dssp             ECSSCCCCEEECTTS---SEEEEEET---------TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTT----SSEE
T ss_pred             cCCCCEeEEEEeCCC---CEEEEEEC---------CCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCC----CCEE
Confidence            456778899998887   77766552         589999999987653333332 223455788999999    8888


Q ss_pred             EEEcCC-ccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeee----eecccc
Q 020107           86 AQADAD-GGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQ----WKAHEF  150 (331)
Q Consensus        86 ~~~~~d-g~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~----~~~~~~  150 (331)
                      ++++.+ +.+ +|+......        +...+.++.++|+++.+++++. +..|.+|+...........    ......
T Consensus        98 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~  177 (333)
T d1ri6a_          98 FVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA  177 (333)
T ss_dssp             EEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred             eecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCC
Confidence            888764 455 665544322        3455678899999998877775 6679999987643211111    112334


Q ss_pred             eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee----eeec---ccCCCcceEEEEEecCCCCEEE-EEecCCeEEE
Q 020107          151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL----AFQN---SKIHKMGVCCIASIPSDSNTLL-TGSYDEYLRV  222 (331)
Q Consensus       151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~---~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~i  222 (331)
                      ....++|++.....+.+....+...+++........    ....   ..........+.+++ ++++++ ++..++.+.+
T Consensus       178 ~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~~~~~~~~~~~~~~  256 (333)
T d1ri6a_         178 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITV  256 (333)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred             CccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec-ccCceeeecccCCeEEE
Confidence            567899998444445556677788888876443211    1111   011344567888999 776554 4556789999


Q ss_pred             EEecCCCCCceee-eeecCCceEEEEECCCCCCeEEEEEe-cCcEEEEEEcCcccce
Q 020107          223 WDVRSISKPVNET-SVCLGGGVWRIKHHPFIPGLVLAACM-HNGFAVVKVGGEKAEV  277 (331)
Q Consensus       223 wd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  277 (331)
                      |++.......... .......+..++|+|++ ..+++++. ++.+.+|++...++.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~p~~~a~spDG-k~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEECTTSCCEEEEEEEECSSSCCCEEECTTS-SEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEEcCCCCEEEEEEEeCCCCCeeEEEEeCCC-CEEEEEECCCCeEEEEEEECCCCcE
Confidence            9998754433321 23345668899999998 45555554 5778899887665543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.70  E-value=8.9e-14  Score=114.89  Aligned_cols=267  Identities=11%  Similarity=-0.043  Sum_probs=169.3

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCc-------EeEEEEcCCCCCCCCe
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG-------IFDIKWSPVGGNAGPF   84 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~~   84 (331)
                      ...+.|+|++   .+|+++.+..........++.|.+||..+.+ ....+ ..+...       ...+.|+|+    ++.
T Consensus        68 ~~~~a~SpDG---~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~-~~~~~-~~~~~~~~~~~~~~~~~~~s~d----g~~  138 (373)
T d2madh_          68 LPNPVAAHSG---SEFALASTSFSRIAKGKRTDYVEVFDPVTFL-PIADI-ELPDAPRFDVGPYSWMNANTPN----NAD  138 (373)
T ss_pred             CccEEEcCCC---CEEEEEeecCCcccccccceEEEEEECCCCc-EEEEE-ecCCcceeEeccCCCcEEEEeC----CCc
Confidence            3368888877   7888876433222233467899999999876 33322 333322       255788888    666


Q ss_pred             EEEEcC--CccE-EEecCCCcc--cCccEEEEEEcCCCCeE-EEEecCCeEEEEEccccceeeeeeee----cccceeEE
Q 020107           85 LAQADA--DGGL-LRDITGEKI--SSSMCLCLEWNPSATSI-TVGLSDGSVSIVSVVESQLEVLQQWK----AHEFELWA  154 (331)
Q Consensus        85 l~~~~~--dg~i-iw~~~~~~~--~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~v~~  154 (331)
                      ++....  ++.+ +|+....+.  +.....++.++|+++.+ ++.+.|+.+.+|+...++........    ........
T Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (373)
T d2madh_         139 LLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQP  218 (373)
T ss_pred             EEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeee
Confidence            655543  3444 787766543  33456688899998765 67778999999999876542221111    11222334


Q ss_pred             EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC----------CcceEEEEEecCCC----------CEEEEE
Q 020107          155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH----------KMGVCCIASIPSDS----------NTLLTG  214 (331)
Q Consensus       155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~----------~~l~~~  214 (331)
                      ..+.+ + ..++..+.++.+.+|+............ ..+          ......+.++| ++          ..+++.
T Consensus       219 ~~~~~-~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~  294 (373)
T d2madh_         219 AQANK-S-GRIVWPVYSGKILQADISAAGATNKAPI-DALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLH  294 (373)
T ss_pred             EEECC-C-ceEEEecCCceEEEEEcCCCeEEEEEee-ccccCcEEeeeeccCcceeeEEec-CCCeEEEecCCCceEEee
Confidence            45554 3 4556667789999999887653222111 101          11223344444 33          344556


Q ss_pred             ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE-EEEecCcEEEEEEcCcccceeEEeecCCcceeeeee
Q 020107          215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL-AACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADW  293 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  293 (331)
                      ..++.+.+||..++ +.+..  ..+...+..++|+|+++.+++ +.+.++.+++|++..  ++.+.++.++....+.+++
T Consensus       295 ~~~~~v~~~d~~t~-~~~~~--~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t--g~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         295 AAAKEVTSVTGLVG-QTSSQ--ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA--GDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             cCCCeEEEEECCCC-cEEEE--ecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC--CCEEEEECCCCCCCcEEEE
Confidence            66788999999885 44554  567788999999999855454 555677789998877  6889999887777777776


Q ss_pred             cCC
Q 020107          294 QRG  296 (331)
Q Consensus       294 ~~~  296 (331)
                      .++
T Consensus       370 ~~~  372 (373)
T d2madh_         370 MNE  372 (373)
T ss_pred             ecC
Confidence            543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.68  E-value=6.9e-16  Score=126.11  Aligned_cols=231  Identities=10%  Similarity=0.007  Sum_probs=151.0

Q ss_pred             EEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEE-EecCCeEEEEEccccceeee
Q 020107           72 IKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITV-GLSDGSVSIVSVVESQLEVL  142 (331)
Q Consensus        72 ~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~  142 (331)
                      ++|+++    +++|++++.++.+ +||+.+.+.       +...+.+++|+|||+++++ +..++.|.+||+.+++.  +
T Consensus         2 ~a~~~~----~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~--~   75 (346)
T d1jmxb_           2 PALKAG----HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--T   75 (346)
T ss_dssp             CCCCTT----CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--E
T ss_pred             ccCCCC----CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee--e
Confidence            467888    8999999999999 999998765       2345679999999998754 55689999999998754  3


Q ss_pred             eeeec------ccceeEEEeeCCCCCcEEEEEc------------CCCeEEEEEccCCCceeeeecccCCCcceEEEEEe
Q 020107          143 QQWKA------HEFELWATSFDVHQPHMVYTGS------------DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI  204 (331)
Q Consensus       143 ~~~~~------~~~~v~~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  204 (331)
                      ..+..      +...+..++|+| +++++++++            .++.+.+||..+++....+.... ....+..+.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  153 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAA  153 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEEC
T ss_pred             eeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-ccCceEEEEec
Confidence            33322      123456889998 767776654            47789999998876555444311 23455666676


Q ss_pred             cCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeE-------------------------EEE
Q 020107          205 PSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLV-------------------------LAA  259 (331)
Q Consensus       205 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------~~~  259 (331)
                      + ++.+++++   +.+.+||..+. +.+..  .........+.++|++...+                         ...
T Consensus       154 ~-~~~~~~~~---~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (346)
T d1jmxb_         154 D-DGSLYVAG---PDIYKMDVKTG-KYTVA--LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA  226 (346)
T ss_dssp             T-TSCEEEES---SSEEEECTTTC-CEEEE--ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred             C-CCEEEEeC---CcceEEEccCC-CEEEE--EecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeec
Confidence            6 66655543   45889998874 33333  23333344444555432211                         111


Q ss_pred             EecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107          260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      .....+.+|++... .........|...+..+.+++++         .+++..+  ++.|++||+.++.+
T Consensus       227 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~v~v~d~~~~~~  284 (346)
T d1jmxb_         227 DLLYGYLSVDLKTG-KTHTQEFADLTELYFTGLRSPKD---------PNQIYGV--LNRLAKYDLKQRKL  284 (346)
T ss_dssp             EEEEEEEEEETTTC-CEEEEEEEECSSCEEEEEECSSC---------TTEEEEE--ESEEEEEETTTTEE
T ss_pred             cCCceEEEEECCCC-ceEEEEeecccceeEEEEEeCCC---------CEEEEec--CCeEEEEECCCCcE
Confidence            22233344444332 22334455678888999999998         5777776  67899999988753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=2e-14  Score=117.96  Aligned_cols=262  Identities=11%  Similarity=0.054  Sum_probs=155.7

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec-------CcEeEEEEcCCCCCCC
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT-------AGIFDIKWSPVGGNAG   82 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~   82 (331)
                      +....++|+|++   ++|++.+........+..++.|++||..+.+ ....+ ..+.       .....++|+|+    +
T Consensus        47 g~~~~~a~SpDg---~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~-~~~~~-~~~~~~~~~~~~~~~~~~~s~d----g  117 (355)
T d2bbkh_          47 GFLPNPVVADDG---SFIAHASTVFSRIARGERTDYVEVFDPVTLL-PTADI-ELPDAPRFLVGTYPWMTSLTPD----G  117 (355)
T ss_dssp             CSSCEEEECTTS---SCEEEEEEEEEETTEEEEEEEEEEECTTTCC-EEEEE-EETTCCCCCBSCCGGGEEECTT----S
T ss_pred             CCCCceEEcCCC---CEEEEEeCCCccccccCCCCEEEEEECCCCC-EEEEE-ecCCcceeecCCCCceEEEecC----C
Confidence            334468888877   6666543111110111147899999999875 33333 2221       22467899999    8


Q ss_pred             CeEEEEcCC--ccE-EEecCCCccc-------------CccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeee
Q 020107           83 PFLAQADAD--GGL-LRDITGEKIS-------------SSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQW  145 (331)
Q Consensus        83 ~~l~~~~~d--g~i-iw~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~  145 (331)
                      +.+++++..  ..+ +|+..+.+..             ......+.++++++.++.... ++.+.+++.....       
T Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-------  190 (355)
T d2bbkh_         118 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-------  190 (355)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-------
T ss_pred             CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-------
Confidence            887776543  334 8888776531             011123445555554443322 3344444433221       


Q ss_pred             ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC----------CcceEEEEEecCCCCEEEEEe
Q 020107          146 KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH----------KMGVCCIASIPSDSNTLLTGS  215 (331)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~  215 (331)
                      ..+...+....+.+ .+..++.++.++.+++|++..++....-.. ..+          ......++++| ++..++...
T Consensus       191 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~  267 (355)
T d2bbkh_         191 PEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAV-EALTEAERADGWRPGGWQQVAYHR-ALDRIYLLV  267 (355)
T ss_dssp             CTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCE-ESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEE
T ss_pred             ceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEecc-CCcccceEeeeeeccceEEEEEeC-CCCeEEEEe
Confidence            12333455566675 667788889999999999988764221111 101          12334578888 777776655


Q ss_pred             cC----------CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecC
Q 020107          216 YD----------EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKH  284 (331)
Q Consensus       216 ~d----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h  284 (331)
                      .+          ..|.+||..+. +.+..  ..+...+.+++|+|+++.++++++ .++.+.+|++..  ++.+.++.++
T Consensus       268 ~~~~~~~~~~~~~~v~v~d~~t~-~~~~~--~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t--g~~~~~i~~~  342 (355)
T d2bbkh_         268 DQRDEWRHKTASRFVVVLDAKTG-ERLAK--FEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES--GEELRSVNQL  342 (355)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTC-CEEEE--EEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT--CCEEEEECCC
T ss_pred             ccCCceeecCCCCeEEEEeCCCC-cEEEE--ecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC--CCEEEEEeCc
Confidence            43          36999999985 44544  445667899999999855555554 467788888876  6888888766


Q ss_pred             CcceeeeeecC
Q 020107          285 GSLAYGADWQR  295 (331)
Q Consensus       285 ~~~v~~~~~~~  295 (331)
                      ...-..+.+.+
T Consensus       343 G~~p~~i~~~d  353 (355)
T d2bbkh_         343 GHGPQVITTAD  353 (355)
T ss_dssp             CSSCCEEECCC
T ss_pred             CCCccEEEeCC
Confidence            54444444433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.61  E-value=1.3e-13  Score=117.80  Aligned_cols=136  Identities=10%  Similarity=0.101  Sum_probs=95.4

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-----ecCcEeEEEEcCCCCCCCCeE
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-----DTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      ....+.|++.+   +++..            .++.+.+||+.+++  ...+...     |...|.++.|||+    +++|
T Consensus        18 ~~~~~~W~~d~---~~~~~------------~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~i~~~~~SpD----g~~i   76 (470)
T d2bgra1          18 KLYSLRWISDH---EYLYK------------QENNILVFNAEYGN--SSVFLENSTFDEFGHSINDYSISPD----GQFI   76 (470)
T ss_dssp             CCCCCEECSSS---EEEEE------------SSSCEEEEETTTCC--EEEEECTTTTTTSSSCCCEEEECTT----SSEE
T ss_pred             cccCCEeCCCC---EEEEE------------cCCcEEEEECCCCC--EEEEEchhhhhhccCccceeEECCC----CCEE
Confidence            34567888766   66643            47889999999886  2233233     3467999999999    9999


Q ss_pred             EEEcC---------CccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee-----
Q 020107           86 AQADA---------DGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW-----  145 (331)
Q Consensus        86 ~~~~~---------dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----  145 (331)
                      +.++.         ++.+ +|++.+++.     +...+..+.|+|||+.+|.. .++.+.+|+..+++...+...     
T Consensus        77 ~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~  155 (470)
T d2bgra1          77 LLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI  155 (470)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred             EEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCc
Confidence            88754         3444 899988765     46778999999999999985 567899999887754222111     


Q ss_pred             --ec---------ccceeEEEeeCCCCCcEEEEEc
Q 020107          146 --KA---------HEFELWATSFDVHQPHMVYTGS  169 (331)
Q Consensus       146 --~~---------~~~~v~~~~~~~~~~~~l~~~~  169 (331)
                        .+         .......+.|+| +++.|+...
T Consensus       156 ~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~  189 (470)
T d2bgra1         156 IYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQ  189 (470)
T ss_dssp             EEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEE
T ss_pred             ccccccceeeeeeecCCccccEECC-CCCccceeE
Confidence              00         112345678999 777777764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=5e-14  Score=116.42  Aligned_cols=283  Identities=11%  Similarity=-0.012  Sum_probs=165.1

Q ss_pred             ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCc--EEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107            8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGS--ISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL   85 (331)
Q Consensus         8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~--i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   85 (331)
                      ..++...++..+.... .+++...+         .+|.  +.+||..+.+ .+..+ ..+...  .++|+|+    ++.|
T Consensus        18 ~~g~~~~~a~~~~~~~-~~v~~~~~---------~~g~~~~~~~d~~~~~-~~~~~-~~~~~~--~~a~spD----g~~i   79 (368)
T d1mdah_          18 SDGSSCDHGPGAISRR-SHITLPAY---------FAGTTENWVSCAGCGV-TLGHS-LGAFLS--LAVAGHS----GSDF   79 (368)
T ss_dssp             CCCCCBCCCCCCCTTE-EEEEECTT---------TCSSEEEEEEETTTTE-EEEEE-EECTTC--EEEECTT----SSCE
T ss_pred             cCCCccccccCCCCcc-eeEEeecc---------CCCcceEEEEeCCCCc-EEEEE-eCCCCC--cceECCC----CCEE
Confidence            3455555655555421 23333221         3444  5556766654 33333 444433  5899999    8888


Q ss_pred             EEEc----------CCccE-EEecCCCccc-------------CccEEEEEEcCCCCeEEEEe-cCCeEEEEEcccccee
Q 020107           86 AQAD----------ADGGL-LRDITGEKIS-------------SSMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLE  140 (331)
Q Consensus        86 ~~~~----------~dg~i-iw~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~  140 (331)
                      ++++          .|+.+ +||..+.+..             ......++|+|||++|+++. .++.+.+||+.+++. 
T Consensus        80 ~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~-  158 (368)
T d1mdah_          80 ALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-  158 (368)
T ss_dssp             EEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-
T ss_pred             EEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE-
Confidence            8765          35556 9998876542             11123689999999998876 479999999998765 


Q ss_pred             eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec---ccCCCcceEEEEEecCCCCEEEEEecC
Q 020107          141 VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN---SKIHKMGVCCIASIPSDSNTLLTGSYD  217 (331)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d  217 (331)
                       ...+..+...    .+.|.....+++.+.||.+.++++...........   ...+...+..+.+.+ ++..+.+.  +
T Consensus       159 -~~~~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--~  230 (368)
T d1mdah_         159 -DQLTKSASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY-PGMLVWAV--A  230 (368)
T ss_dssp             -EEEEECSSCC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT-TTEEEECB--S
T ss_pred             -eEEeeccCcc----eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc-CcEEEEec--C
Confidence             4444433322    12223456777788899999998876543322211   112344455666766 55554443  4


Q ss_pred             CeEEEEEecCCCCCceeeee----------ecCCceEEEEECCCCCCeEEEEEecC--------cEEEEEEcCcccceeE
Q 020107          218 EYLRVWDVRSISKPVNETSV----------CLGGGVWRIKHHPFIPGLVLAACMHN--------GFAVVKVGGEKAEVLE  279 (331)
Q Consensus       218 ~~i~iwd~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~  279 (331)
                      +.+.+++.............          ........++++|++...+++.....        .+.+|+...  ++.+.
T Consensus       231 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t--~~~~~  308 (368)
T d1mdah_         231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--GQTSG  308 (368)
T ss_dssp             SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--CCEEE
T ss_pred             CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC--CcEeE
Confidence            55666666543211111000          01122345788888744444332222        244444433  56666


Q ss_pred             EeecCCcceeeeeecCCCCcccccccCc-EEEEeecCCCeEEEEcCCCccc
Q 020107          280 TYAKHGSLAYGADWQRGRSSLEGKRKNS-LVATCSFYDRLLRIWMPESDCL  329 (331)
Q Consensus       280 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~~~~d~~i~iW~~~~~~~  329 (331)
                      ++. +...+.+++|+|++.        . ++++++ .|+.|++||..++..
T Consensus       309 ~~~-~~~~~~~~a~spDG~--------~~ly~s~~-~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         309 PIS-NGHDSDAIIAAQDGA--------SDNYANSA-GTEVLDIYDAASDQD  349 (368)
T ss_dssp             CCE-EEEEECEEEECCSSS--------CEEEEEET-TTTEEEEEESSSCEE
T ss_pred             Eec-CCCceeEEEECCCCC--------EEEEEEeC-CCCeEEEEECCCCCE
Confidence            555 345788999999983        3 456777 899999999998754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.39  E-value=4.9e-09  Score=85.73  Aligned_cols=278  Identities=11%  Similarity=-0.048  Sum_probs=156.9

Q ss_pred             EEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE---eeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCC-
Q 020107           26 VLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY---RMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGE-  101 (331)
Q Consensus        26 ~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~-  101 (331)
                      .|.+|+|.        ..+.|+++.++.....+..+.   ......+..|+|+|+    ++.|.++..++...+.+... 
T Consensus         4 ~l~vGtyt--------~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d----~~~ly~~~~~~~~~~~i~~~~   71 (365)
T d1jofa_           4 HLMIGTWT--------PPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE----RKNIYGAAMKKWSSFAVKSPT   71 (365)
T ss_dssp             EEEEEESS--------SSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT----SSEEEEEEBTEEEEEEEEETT
T ss_pred             EEEEEeec--------CCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCC----CCEEEEEeCCcEEEEEEeCCC
Confidence            47788863        466799888887654443332   223445678999999    88888876654333333321 


Q ss_pred             -cc------cCccEEEEEEcCCCCeEEE--Ee-cCCeEEEEEcccc-------------cee-eeee-eecccceeEEEe
Q 020107          102 -KI------SSSMCLCLEWNPSATSITV--GL-SDGSVSIVSVVES-------------QLE-VLQQ-WKAHEFELWATS  156 (331)
Q Consensus       102 -~~------~~~~v~~~~~~~~~~~l~~--~~-~dg~i~i~d~~~~-------------~~~-~~~~-~~~~~~~v~~~~  156 (331)
                       ..      .......+.++++++.+++  +. ..++|..+.+...             +.. .... -......+.++.
T Consensus        72 ~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~  151 (365)
T d1jofa_          72 EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV  151 (365)
T ss_dssp             EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE
T ss_pred             CeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEE
Confidence             11      1122335667778775333  22 2455555443220             000 0000 111223468999


Q ss_pred             eCCCCCcEEEEEc-CCCeEEEEEccCCCceeeeec--ccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCc
Q 020107          157 FDVHQPHMVYTGS-DDCKFSGWDIRESPFKLAFQN--SKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPV  232 (331)
Q Consensus       157 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~  232 (331)
                      |+| ++++++++. ....|.+|+............  ........+.+.|+| +++++++.. .+++|.+|++.......
T Consensus       152 ~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~~~~~~  229 (365)
T d1jofa_         152 FDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             ECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             ECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecCCCceE
Confidence            999 667666554 456888888764332221111  112456789999999 888775555 68899999997643221


Q ss_pred             eeeee-----------------ecCCceEEEEECCCCCCeEEEEEecCc-----EEEEEEcCcccceeEE-----eecCC
Q 020107          233 NETSV-----------------CLGGGVWRIKHHPFIPGLVLAACMHNG-----FAVVKVGGEKAEVLET-----YAKHG  285 (331)
Q Consensus       233 ~~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~h~  285 (331)
                      .....                 ........+.++|+++.++++...++.     +..+++... +.....     .....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~G  308 (365)
T d1jofa_         230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC-GSIEKQLFLSPTPTSG  308 (365)
T ss_dssp             EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT-SCEEEEEEEEECSSCC
T ss_pred             EEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCC-CceeeEeEeeEEEcCC
Confidence            11000                 111235678999998444444334443     666777654 222111     11223


Q ss_pred             cceeeeeecC-CCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          286 SLAYGADWQR-GRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       286 ~~v~~~~~~~-~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ....+++++| ++         ++|+.+...++.|.+|+++..
T Consensus       309 ~~p~~i~~~p~~G---------~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         309 GHSNAVSPCPWSD---------EWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTCCCEEECTTCT---------TEEEEECSSSCEEEEEEEETT
T ss_pred             CCccEEEecCCCC---------CEEEEEeCCCCeEEEEEEeCC
Confidence            4567799998 56         555544338899999988654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=2.6e-12  Score=106.13  Aligned_cols=264  Identities=7%  Similarity=-0.040  Sum_probs=159.6

Q ss_pred             eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC--eEEEEcCC
Q 020107           14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP--FLAQADAD   91 (331)
Q Consensus        14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~~~~d   91 (331)
                      .+.+....|+|++|.+...         .+++|.++|+++.+ ..+.+.-.+...+..++|+|+    ++  +++..+.+
T Consensus        73 ~~s~t~gtpDGr~lfV~d~---------~~~rVavIDl~t~k-~~~ii~iP~g~gphgi~~spd----g~t~YV~~~~~~  138 (441)
T d1qnia2          73 HISMTDGRYDGKYLFINDK---------ANTRVARIRLDIMK-TDKITHIPNVQAIHGLRLQKV----PKTNYVFCNAEF  138 (441)
T ss_dssp             EEEEETTEEEEEEEEEEET---------TTTEEEEEETTTTE-EEEEEECTTCCCEEEEEECCS----SBCCEEEEEECS
T ss_pred             CcceecccCCCCEEEEEcC---------CCCEEEEEECCCCc-EeeEEecCCCCCccceEEecc----CCEEEEEeccCC
Confidence            3344334456688877753         68999999999876 333332345677999999998    55  44444443


Q ss_pred             ccE------------------EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCC-eEEEEEccccceeeeeeeec
Q 020107           92 GGL------------------LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDG-SVSIVSVVESQLEVLQQWKA  147 (331)
Q Consensus        92 g~i------------------iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~  147 (331)
                      ...                  ..+..+.+.     .......+.|+|+|+++++++.+. .+..++..+.+.  ...+..
T Consensus       139 ~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~--~d~i~v  216 (441)
T d1qnia2         139 VIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRND--RDWVVV  216 (441)
T ss_dssp             CEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSS--BCEEEE
T ss_pred             cccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcce--EEEEEe
Confidence            321                  233333322     134456889999999988887643 343444433321  111111


Q ss_pred             ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE-EEEecCCeEEEEEec
Q 020107          148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL-LTGSYDEYLRVWDVR  226 (331)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~iwd~~  226 (331)
                      . ..-..+++.| +++++.. +.++.+.+++....+....+..    ......+.++| +++++ +++..+++|.+||+.
T Consensus       217 ~-n~p~~~~~~~-dGk~~~v-~~~~v~vvd~~~~~~v~~~IPv----gksPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         217 F-NVERIAAAVK-AGNFKTI-GDSKVPVVDGRGESEFTRYIPV----PKNPHGLNTSP-DGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             E-EHHHHHHHHH-TTCCBCC-TTCCCCEEECSSSCSSEEEECC----BSSCCCEEECT-TSCEEEEECTTSSBEEEEEGG
T ss_pred             C-CccceEEEec-CCCEEEe-CCCCcEEEEcccCCceEEEEeC----CCCccCceECC-CCCEEEEeCCcCCcEEEEEee
Confidence            1 1123345666 6665554 4467777887776665555554    33357789999 88876 556789999999997


Q ss_pred             CCCCCc-------ee--eeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCc--------ccceeEEe-----ec
Q 020107          227 SISKPV-------NE--TSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGE--------KAEVLETY-----AK  283 (331)
Q Consensus       227 ~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~-----~~  283 (331)
                      +..+.+       ..  -.....-.....+|.++  +..+++. -+..+..|++...        ....+..+     .+
T Consensus       289 k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~--g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~G  366 (441)
T d1qnia2         289 KLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR--GNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG  366 (441)
T ss_dssp             GHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSS--SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE
T ss_pred             hhhhHhhccCCcceEEEeecccccCcccceecCC--ceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCC
Confidence            632110       00  00112223456789998  4455554 5667777886421        11233333     58


Q ss_pred             CCcceeeeeecCCCCcccccccCcEEEEe
Q 020107          284 HGSLAYGADWQRGRSSLEGKRKNSLVATC  312 (331)
Q Consensus       284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  312 (331)
                      |...+.+..++|++         ++|+++
T Consensus       367 H~~~~~~~t~~pdG---------k~l~s~  386 (441)
T d1qnia2         367 HNHASLTESRDADG---------KWLVVL  386 (441)
T ss_dssp             EEEETTTTSTTCCC---------CEEEEE
T ss_pred             CCccccccccCCCC---------cEEEec
Confidence            88889999999999         799999

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=2.6e-08  Score=77.52  Aligned_cols=236  Identities=9%  Similarity=0.043  Sum_probs=139.6

Q ss_pred             cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE----EEecCCCcc-----cCccEEEEEEcC
Q 020107           45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL----LRDITGEKI-----SSSMCLCLEWNP  115 (331)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i----iw~~~~~~~-----~~~~v~~~~~~~  115 (331)
                      .|.|.|.+...  .+.+. .+...+..-+|||+    |+.||-.......    +.+..+...     +........|+|
T Consensus        20 ~l~i~d~dG~~--~~~l~-~~~~~~~sP~wSPD----Gk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp   92 (269)
T d2hqsa1          20 ELRVSDYDGYN--QFVVH-RSPQPLMSPAWSPD----GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP   92 (269)
T ss_dssp             EEEEEETTSCS--CEEEE-EESSCEEEEEECTT----SSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT
T ss_pred             EEEEEcCCCCC--cEEEe-cCCCceeeeEECCC----CCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecC
Confidence            57777777654  44443 35677889999999    8888876544432    334433322     356677889999


Q ss_pred             CCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCe--EEEEEccCCCceeeeeccc
Q 020107          116 SATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCK--FSGWDIRESPFKLAFQNSK  192 (331)
Q Consensus       116 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~  192 (331)
                      +++.++.... ++...++........... ............+++.....+++...++.  |.+.++..+... ....  
T Consensus        93 dg~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~--  168 (269)
T d2hqsa1          93 DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW--  168 (269)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC--
T ss_pred             CCCeeeEeeecCCccceeeccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccce-eeec--
Confidence            9998876654 444444433332222222 22233344455666645556666666664  455555554322 2222  


Q ss_pred             CCCcceEEEEEecCCCCEEEEEec-CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107          193 IHKMGVCCIASIPSDSNTLLTGSY-DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG  271 (331)
Q Consensus       193 ~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (331)
                       .........|+| ++..++..+. .+...+|...........  ...........|+|+|+.+++.+...+.-.++.+.
T Consensus       169 -~~~~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~  244 (269)
T d2hqsa1         169 -EGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQV--LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS  244 (269)
T ss_dssp             -SSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEEE--CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             -cccccccccccc-ccceeEEEeecCCceeeeEeecccccceE--eecCccccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence             466677889999 7777766654 445555555543333333  45566778889999985555554443333344333


Q ss_pred             CcccceeEEeecCCcceeeeeecCC
Q 020107          272 GEKAEVLETYAKHGSLAYGADWQRG  296 (331)
Q Consensus       272 ~~~~~~~~~~~~h~~~v~~~~~~~~  296 (331)
                      -. +.....+....+.+...+|+|-
T Consensus       245 ~d-g~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         245 TD-GRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             TT-SCCEEECCCSSSEEEEEEECCC
T ss_pred             CC-CCCEEEEeCCCCcEEeEEeCCC
Confidence            33 4555666666778888999984

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.30  E-value=1.3e-10  Score=95.49  Aligned_cols=253  Identities=9%  Similarity=0.012  Sum_probs=146.5

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec-------CcEeEEEEcCCCCCCCCe
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT-------AGIFDIKWSPVGGNAGPF   84 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~   84 (331)
                      ...++|+|++   ..|++.+....-...+..++.|++||..+.+ ....+ ..+.       .....++|+|+    +++
T Consensus        67 ~~~~a~spDg---~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~-~~~~i-~~p~~~~~~~g~~p~~~a~SpD----Gk~  137 (368)
T d1mdah_          67 LSLAVAGHSG---SDFALASTSFARSAKGKRTDYVEVFDPVTFL-PIADI-ELPDAPRFSVGPRVHIIGNCAS----SAC  137 (368)
T ss_dssp             TCEEEECTTS---SCEEEEEEEETTTTSSSEEEEEEEECTTTCC-EEEEE-EETTSCSCCBSCCTTSEEECTT----SSC
T ss_pred             CCcceECCCC---CEEEEEcccCccccccccCCeEEEEECCCCc-Eeeee-cCCccceecccCCccceEECCC----CCE
Confidence            3467788776   7777765222111223357889999998875 33333 2222       12356899999    888


Q ss_pred             EEEEc-CCccE-EEecCCCcccCcc-E-EEEEEcC-CCCeEEEEecCCeEEEEEccccceeeee----eeecccceeEEE
Q 020107           85 LAQAD-ADGGL-LRDITGEKISSSM-C-LCLEWNP-SATSITVGLSDGSVSIVSVVESQLEVLQ----QWKAHEFELWAT  155 (331)
Q Consensus        85 l~~~~-~dg~i-iw~~~~~~~~~~~-v-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~v~~~  155 (331)
                      |++++ .++.+ +|++.+.+..... + .+..+.+ ....++..+.||.+.++++.........    .+..+...+...
T Consensus       138 l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (368)
T d1mdah_         138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA  217 (368)
T ss_dssp             EEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE
T ss_pred             EEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeec
Confidence            88776 56777 9999886542100 0 0001112 2334566677888888887654321111    122233445556


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC----------CCcceEEEEEecCCCCEEEEEecC--------
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI----------HKMGVCCIASIPSDSNTLLTGSYD--------  217 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~l~~~~~d--------  217 (331)
                      .+.+ ++..+.+  ..+.+.+++............ ..          .......++++| ++..++....+        
T Consensus       218 ~~~~-~g~~~~~--~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~~~~  292 (368)
T d1mdah_         218 QANY-PGMLVWA--VASSILQGDIPAAGATMKAAI-DGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAA  292 (368)
T ss_dssp             EETT-TTEEEEC--BSSCCEEEECCSSCCEEECCC-CSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSC
T ss_pred             cccc-CcEEEEe--cCCCEEEEeecCCceEEEeec-ccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCceeecC
Confidence            6665 4444443  346667777665543222111 00          112234577888 66665554322        


Q ss_pred             -CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeec
Q 020107          218 -EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAK  283 (331)
Q Consensus       218 -~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  283 (331)
                       ..|.+||..++ +.+..  ..+...+..++|+|+++.++++++ .++.+.+|+...  ++.+.++.-
T Consensus       293 ~~~v~v~D~~t~-~~~~~--~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t--gk~~~~i~~  355 (368)
T d1mdah_         293 AENTSSVTASVG-QTSGP--ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS--DQDQSSVEL  355 (368)
T ss_dssp             EEEEEEEESSSC-CEEEC--CEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS--CEEEEECCC
T ss_pred             CceEEEEECCCC-cEeEE--ecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC--CCEEEEEEC
Confidence             35899999986 44544  445567899999999865555554 567788888766  677777763

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.27  E-value=7.8e-11  Score=97.26  Aligned_cols=248  Identities=7%  Similarity=0.023  Sum_probs=147.9

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEe----cCCCcccCccEEEEEEcCC
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRD----ITGEKISSSMCLCLEWNPS  116 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~----~~~~~~~~~~v~~~~~~~~  116 (331)
                      .+|.|++|++.+.. .++.+      +|    |+|+    +.. ..|..+.+. ++.    ...+..|..........||
T Consensus        19 ~sG~V~V~dlpS~r-~l~~I------pV----fspd----~~~-g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpD   82 (441)
T d1qnia2          19 HQGEVRVLGVPSMR-ELMRI------PV----FNVD----SAT-GWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYD   82 (441)
T ss_dssp             TTCCEEEEEETTTE-EEEEE------CS----SSBC----TTT-CTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEE
T ss_pred             CCCcEEEEeCCCCc-EEEEE------Ee----EcCC----CCE-EEEECCccceEEecccccccCcccCCCcceecccCC
Confidence            69999999998875 33333      12    7887    332 112222111 111    1122334444555666889


Q ss_pred             CCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCc--EEEEEcCCC-----------------eEEE
Q 020107          117 ATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH--MVYTGSDDC-----------------KFSG  176 (331)
Q Consensus       117 ~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg-----------------~i~i  176 (331)
                      |++|++.. .+.+|.++|+++.+...+..+ .+...+..++|+| +++  +++..+.+.                 .+..
T Consensus        83 Gr~lfV~d~~~~rVavIDl~t~k~~~ii~i-P~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          83 GKYLFINDKANTRVARIRLDIMKTDKITHI-PNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEEC-TTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEeeEEec-CCCCCccceEEec-cCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            99987765 589999999998765333333 3456789999998 555  343333322                 2345


Q ss_pred             EEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC--------------------------------------
Q 020107          177 WDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE--------------------------------------  218 (331)
Q Consensus       177 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--------------------------------------  218 (331)
                      +|..+.+....+..    ...+..+.++| +++++++.+.+.                                      
T Consensus       161 iD~~t~~v~~qI~v----~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~  235 (441)
T d1qnia2         161 IDAETMDVAWQVIV----DGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG  235 (441)
T ss_dssp             EETTTCSEEEEEEE----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred             ecCccceeeEEEec----CCCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC
Confidence            78777766555554    34578899999 888888776542                                      


Q ss_pred             ---eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc---------ceeEEeecCCc
Q 020107          219 ---YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA---------EVLETYAKHGS  286 (331)
Q Consensus       219 ---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~h~~  286 (331)
                         .+.+++... ...+..  .+-......+.++|+++..+++...++.+.+|++.....         ..+.......-
T Consensus       236 ~~~v~vvd~~~~-~~v~~~--IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl  312 (441)
T d1qnia2         236 DSKVPVVDGRGE-SEFTRY--IPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL  312 (441)
T ss_dssp             TCCCCEEECSSS-CSSEEE--ECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred             CCCcEEEEcccC-CceEEE--EeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc
Confidence               223332222 122222  333445678999999844455555778899999865320         11111111111


Q ss_pred             ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      .....+|.+++         ..+.|.. .|.+|..|+++
T Consensus       313 gplh~~fd~~g---------~~yts~~-~ds~v~kw~~~  341 (441)
T d1qnia2         313 GPLHTTFDGRG---------NAYTTLF-IDSQVCKWNIA  341 (441)
T ss_dssp             CEEEEEECSSS---------EEEEEET-TTTEEEEEEHH
T ss_pred             CcccceecCCc---------eEEEccc-ccceEEEeccc
Confidence            23345788887         6777777 99999999975

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.26  E-value=7.7e-09  Score=84.50  Aligned_cols=249  Identities=7%  Similarity=-0.012  Sum_probs=143.5

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe--EEEEc
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF--LAQAD   89 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--l~~~~   89 (331)
                      +.-++++|.+   ++|.+..           .+.+..|.+....................+.++++    ++.  ++++.
T Consensus        42 ~s~la~s~d~---~~ly~~~-----------~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~----~~~~~v~~a~  103 (365)
T d1jofa_          42 ISWMTFDHER---KNIYGAA-----------MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTN----TRAIFLLAAK  103 (365)
T ss_dssp             CSEEEECTTS---SEEEEEE-----------BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC----CEEEEEEECS
T ss_pred             CCEEEEcCCC---CEEEEEe-----------CCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCC----CCEEEEEEec
Confidence            3456666665   7777776           66788888876542222221222234566777888    553  33332


Q ss_pred             C-CccE-------------EEecCCCc-----------ccCccEEEEEEcCCCCeEEEEec-CCeEEEEEccc-cceeee
Q 020107           90 A-DGGL-------------LRDITGEK-----------ISSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVE-SQLEVL  142 (331)
Q Consensus        90 ~-dg~i-------------iw~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~~  142 (331)
                      . .+.+             +..+....           .....+.++.|+|+|++++++.. ...|.+|+... +.....
T Consensus       104 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~  183 (365)
T d1jofa_         104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV  183 (365)
T ss_dssp             STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             CCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec
Confidence            2 2222             11111100           01234679999999999888765 56788887654 222222


Q ss_pred             eeee--cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec----------------ccCCCcceEEEEEe
Q 020107          143 QQWK--AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN----------------SKIHKMGVCCIASI  204 (331)
Q Consensus       143 ~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------~~~~~~~v~~~~~~  204 (331)
                      ....  ........++|+|+.....++...++.|.+|++...+.......                ...+......+.++
T Consensus       184 ~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s  263 (365)
T d1jofa_         184 GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT  263 (365)
T ss_dssp             EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC
T ss_pred             cceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEEC
Confidence            2222  23456789999994444446666789999999976653222111                00122346678999


Q ss_pred             cCCCCEEEEEec-C-----CeEEEEEecCCCCCceeeee-----ecCCceEEEEECC-CCCCeEEEE-EecCcEEEEEEc
Q 020107          205 PSDSNTLLTGSY-D-----EYLRVWDVRSISKPVNETSV-----CLGGGVWRIKHHP-FIPGLVLAA-CMHNGFAVVKVG  271 (331)
Q Consensus       205 ~~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~  271 (331)
                      | ++++|+++.. +     ..|..|++..... +.....     ........++++| ++ .+++++ ..++.+.+|++.
T Consensus       264 p-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~-~~~~~~~~~~~~~G~~p~~i~~~p~~G-~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         264 F-SGKYMFASSRANKFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             T-TSSEEEEEEEESSTTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEEEEE
T ss_pred             C-CCCEEEEEcccCCCccceEEEEEEecCCCc-eeeEeEeeEEEcCCCCccEEEecCCCC-CEEEEEeCCCCeEEEEEEe
Confidence            9 9998887743 2     2377787766322 222111     1234567899998 55 545454 466778999887


Q ss_pred             CcccceeEEe
Q 020107          272 GEKAEVLETY  281 (331)
Q Consensus       272 ~~~~~~~~~~  281 (331)
                      ......+..+
T Consensus       341 ~~~l~~~~~~  350 (365)
T d1jofa_         341 DEFLHRVARV  350 (365)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCcCcEEEEE
Confidence            6544444443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.19  E-value=3.7e-08  Score=78.21  Aligned_cols=216  Identities=13%  Similarity=0.050  Sum_probs=141.3

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce--e
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL--E  140 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~  140 (331)
                      .+..+++.|+    ++++++...++.| .++......    ....+.+++|.++|+++++...++.+..++......  .
T Consensus        29 ~~e~iAv~pd----G~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLASAPD----GTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEEECTT----SCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcCCEEECCC----CCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence            4788999999    9999998888888 555443321    356788999999999988888888888888765322  1


Q ss_pred             eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec-------ccCCCcceEEEEEecCCCCEEEE
Q 020107          141 VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN-------SKIHKMGVCCIASIPSDSNTLLT  213 (331)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~  213 (331)
                      .+... ........+++.+ +++++++-+.++.+..+|...+........       ..........+.+..  ..++++
T Consensus       105 ~~~~~-~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~  180 (302)
T d2p4oa1         105 TLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVS  180 (302)
T ss_dssp             EEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEE
T ss_pred             ecccc-CCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--Cceeee
Confidence            12222 2345678899998 788888888889998888876642211111       011223456676653  456677


Q ss_pred             EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE--eecCCcceeee
Q 020107          214 GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET--YAKHGSLAYGA  291 (331)
Q Consensus       214 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~  291 (331)
                      .+..+.|..+++....................+++.+++ .++++...++.  ++.+... ++....  ....-...+++
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG-~l~va~~~~~~--V~~i~p~-G~~~~~~~~~~~~~~pt~v  256 (302)
T d2p4oa1         181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG-NLYGATHIYNS--VVRIAPD-RSTTIIAQAEQGVIGSTAV  256 (302)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC-CEEEECBTTCC--EEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred             cCCCCeEEeccccccccccccccccCCCCCcceEECCCC-CEEEEEcCCCc--EEEECCC-CCEEEEEecCCCCCCceEE
Confidence            778889999988764332222123344556789999997 56666656676  5555443 333222  22334467899


Q ss_pred             eecC
Q 020107          292 DWQR  295 (331)
Q Consensus       292 ~~~~  295 (331)
                      +|..
T Consensus       257 afg~  260 (302)
T d2p4oa1         257 AFGQ  260 (302)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9943

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.16  E-value=9.7e-09  Score=81.64  Aligned_cols=203  Identities=12%  Similarity=0.005  Sum_probs=132.0

Q ss_pred             cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107          107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL  186 (331)
Q Consensus       107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  186 (331)
                      .+..+++.|+|+++++...+++|..++.... .   ..+......+.+++|.| +++++++...++.+..++........
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~---~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q---QIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-E---EEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-E---EEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccce
Confidence            4668999999999999888999999886643 2   23334556789999998 78888888888889888876543322


Q ss_pred             eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee--------eeecCCceEEEEECCCCCCeEEE
Q 020107          187 AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET--------SVCLGGGVWRIKHHPFIPGLVLA  258 (331)
Q Consensus       187 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~~~  258 (331)
                      ..............+.+.+ +++++++.+.++.+..+|.......+...        ..........+.+..+  .++++
T Consensus       104 ~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~--~l~~~  180 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN--FLYVS  180 (302)
T ss_dssp             EEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT--EEEEE
T ss_pred             eeccccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC--ceeee
Confidence            2111112456688999999 89888888888888888877542111110        0111123556676654  56666


Q ss_pred             EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          259 ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ....+.+..+++...................++++.+++         ++.++.. .++.|..++.+..
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG---------~l~va~~-~~~~V~~i~p~G~  239 (302)
T d2p4oa1         181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG---------NLYGATH-IYNSVVRIAPDRS  239 (302)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC---------CEEEECB-TTCCEEEECTTCC
T ss_pred             cCCCCeEEeccccccccccccccccCCCCCcceEECCCC---------CEEEEEc-CCCcEEEECCCCC
Confidence            666666444444432111111111223456789999998         6777776 7899999987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.13  E-value=4.3e-08  Score=75.99  Aligned_cols=232  Identities=9%  Similarity=-0.028  Sum_probs=141.5

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA   90 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   90 (331)
                      .+..|++.+.+   ++.++...         ..+.+..++.....  .......-......+++.++    +.++++...
T Consensus        15 ~P~~vavd~dG---~i~v~~~~---------~~~~i~~~~~~~~~--~~~~~~~~~~~p~gvav~~~----g~i~v~d~~   76 (260)
T d1rwia_          15 SPSGVAVDSAG---NVYVTSEG---------MYGRVVKLATGSTG--TTVLPFNGLYQPQGLAVDGA----GTVYVTDFN   76 (260)
T ss_dssp             CEEEEEECTTC---CEEEEECS---------SSCEEEEEC----C--EEECCCCSCCSCCCEEECTT----CCEEEEETT
T ss_pred             CCCEEEEcCCC---CEEEEEcC---------CCCEEEEEcCCCce--EEEeccCCccCceEEEEcCC----CCEEEeeee
Confidence            45778887665   65555431         46777777666543  22221111234578899998    777777666


Q ss_pred             CccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE
Q 020107           91 DGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM  164 (331)
Q Consensus        91 dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (331)
                      ++.+ +++......     ......++++.++++.+++-..+..+..++...... ...... .......++++| ++++
T Consensus        77 ~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~~-~~~~p~~i~~~~-~g~~  153 (260)
T d1rwia_          77 NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFT-GLNDPDGVAVDN-SGNV  153 (260)
T ss_dssp             TEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EECCCC-SCCSCCEEEECT-TCCE
T ss_pred             eceeeeeeeccceeeeeeeeeeecccccccccceeEeecccccccccccccccee-eeeeec-ccCCcceeeecC-CCCE
Confidence            6555 443332221     124568899999998777766677777777655332 111112 223457889998 7788


Q ss_pred             EEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceE
Q 020107          165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVW  244 (331)
Q Consensus       165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  244 (331)
                      +++...++.|..+|...... ..+..  ..-.....|++.+ +++++++....+.|..++....  .........-....
T Consensus       154 ~v~~~~~~~i~~~d~~~~~~-~~~~~--~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~--~~~~~~~~~~~~P~  227 (260)
T d1rwia_         154 YVTDTDNNRVVKLEAESNNQ-VVLPF--TDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGST--TSTVLPFTGLNTPL  227 (260)
T ss_dssp             EEEEGGGTEEEEECTTTCCE-EECCC--SSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCS--CCEECCCCSCCCEE
T ss_pred             eeecccccccccccccccee-eeeec--cccCCCccceeee-eeeeeeeecCCCEEEEEeCCCC--eEEEEccCCCCCeE
Confidence            88888889999999875542 22221  1345678999999 8888888888888888876543  22221122234578


Q ss_pred             EEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          245 RIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      .|++++++ .++++-...+.  |+++..
T Consensus       228 ~i~~d~~g-~l~vad~~~~r--I~~i~~  252 (260)
T d1rwia_         228 AVAVDSDR-TVYVADRGNDR--VVKLTS  252 (260)
T ss_dssp             EEEECTTC-CEEEEEGGGTE--EEEECC
T ss_pred             EEEEeCCC-CEEEEECCCCE--EEEEeC
Confidence            99999986 55555444554  555544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.05  E-value=1.7e-09  Score=91.67  Aligned_cols=142  Identities=8%  Similarity=0.061  Sum_probs=100.6

Q ss_pred             EEEEcCCCCeEEEEecCCeEEEEEccccceeeee---eeecccceeEEEeeCCCCCcEEEEEcC---------CCeEEEE
Q 020107          110 CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ---QWKAHEFELWATSFDVHQPHMVYTGSD---------DCKFSGW  177 (331)
Q Consensus       110 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~i~  177 (331)
                      .+.|.++++++..  .++.+.+||+.+++...+.   .+..+...|.++.|+| +++.|+.++.         ++.+.+|
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEE
Confidence            5789998887653  5788999999998653221   2344567899999999 7888887743         5678999


Q ss_pred             EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee-----------------cC
Q 020107          178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC-----------------LG  240 (331)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~~  240 (331)
                      |+.+++ ...+..   +...+..+.|+| +++.+|.. .++.+.+|+...+. ........                 ..
T Consensus        98 d~~~~~-~~~l~~---~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~-~~~~t~~~~~~~~~~g~~d~~~~~~~~  170 (470)
T d2bgra1          98 DLNKRQ-LITEER---IPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLP-SYRITWTGKEDIIYNGITDWVYEEEVF  170 (470)
T ss_dssp             ETTTTE-ECCSSC---CCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSC-CEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             ECCCCc-cccccc---CCcccccccccc-CcceeeEe-ecccceEEECCCCc-eeeeeeccCCCcccccccceeeeeeec
Confidence            999876 334444   788899999999 99999986 57889999988753 22221111                 12


Q ss_pred             CceEEEEECCCCCCeEEEEEec
Q 020107          241 GGVWRIKHHPFIPGLVLAACMH  262 (331)
Q Consensus       241 ~~v~~~~~~~~~~~~~~~~~~~  262 (331)
                      +....+.|+|++ ..++....+
T Consensus       171 ~~~~~~~wSPDG-k~ia~~~~d  191 (470)
T d2bgra1         171 SAYSALWWSPNG-TFLAYAQFN  191 (470)
T ss_dssp             SSSBCEEECTTS-SEEEEEEEE
T ss_pred             CCccccEECCCC-CccceeEec
Confidence            234568899998 445444443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.04  E-value=1.7e-06  Score=68.74  Aligned_cols=236  Identities=11%  Similarity=0.023  Sum_probs=142.6

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcC-------CccE-EEecCCCccc----------CccEEEEEEcCCCCeEEEEecCCe
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADA-------DGGL-LRDITGEKIS----------SSMCLCLEWNPSATSITVGLSDGS  128 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~-------dg~i-iw~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~  128 (331)
                      .....++|.|+    ++++++...       +|.| .|+..+....          ......+.|.++++.++++...+.
T Consensus        18 ~g~EGpa~d~d----G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~   93 (314)
T d1pjxa_          18 PGAEGPVFDKN----GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             TTCEEEEECTT----SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             CCCeEeEEeCC----CCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCe
Confidence            34567889988    777766543       2345 5665554321          123567999999998888887778


Q ss_pred             EEEEEccccceeeeeee-ecc-cceeEEEeeCCCCCcEEEEEcC---------------CCeEEEEEccCCCceeeeecc
Q 020107          129 VSIVSVVESQLEVLQQW-KAH-EFELWATSFDVHQPHMVYTGSD---------------DCKFSGWDIRESPFKLAFQNS  191 (331)
Q Consensus       129 i~i~d~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~  191 (331)
                      |..++.+.......... .+. -...+.+++.+ ++++.++-..               .|.|..++.. ++.. .+.. 
T Consensus        94 i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~-~~~~-  169 (314)
T d1pjxa_          94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDT-  169 (314)
T ss_dssp             EEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEE-
T ss_pred             EEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec-Ccee-EeeC-
Confidence            88889876432111111 111 11356788988 6777666321               2344444432 2222 2221 


Q ss_pred             cCCCcceEEEEEecCCCC-----EEEEEecCCeEEEEEecCCCCCcee-eeee----cCCceEEEEECCCCCCeEEEEEe
Q 020107          192 KIHKMGVCCIASIPSDSN-----TLLTGSYDEYLRVWDVRSISKPVNE-TSVC----LGGGVWRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       192 ~~~~~~v~~~~~~~~~~~-----~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~----~~~~v~~~~~~~~~~~~~~~~~~  261 (331)
                        .-...+.++|+| +++     ++++-+..+.|..||+......... .+..    ..+....+++..++ .++++...
T Consensus       170 --~~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~~  245 (314)
T d1pjxa_         170 --AFQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWG  245 (314)
T ss_dssp             --EESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEET
T ss_pred             --CcceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC-cEEEEEcC
Confidence              233457889998 553     4555567889999998754322111 0111    22345679999986 56666656


Q ss_pred             cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107          262 HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                      .+.+.  .+....++....+.......++++|.|++.        .++++.+ .++.|...++.
T Consensus       246 ~g~I~--~~dp~~g~~~~~i~~p~~~~t~~afg~d~~--------~lyVt~~-~~g~i~~~~~~  298 (314)
T d1pjxa_         246 SSHIE--VFGPDGGQPKMRIRCPFEKPSNLHFKPQTK--------TIFVTEH-ENNAVWKFEWQ  298 (314)
T ss_dssp             TTEEE--EECTTCBSCSEEEECSSSCEEEEEECTTSS--------EEEEEET-TTTEEEEEECS
T ss_pred             CCEEE--EEeCCCCEEEEEEECCCCCEEEEEEeCCCC--------EEEEEEC-CCCcEEEEECC
Confidence            66644  444443556666666667789999999874        5777777 78988887754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=1.5e-07  Score=72.91  Aligned_cols=230  Identities=8%  Similarity=-0.035  Sum_probs=139.4

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEc-CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce
Q 020107           68 GIFDIKWSPVGGNAGPFLAQAD-ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL  139 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~-~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  139 (331)
                      .-.+|++.++    +.+.++.. ..+.+ .++......      .......++++++++.+++....+.+++++..+...
T Consensus        15 ~P~~vavd~d----G~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          15 SPSGVAVDSA----GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             CEEEEEECTT----CCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CCCEEEEcCC----CCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence            4578999998    77666554 44555 322222111      112346788999998777766666776665443322


Q ss_pred             eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCe
Q 020107          140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY  219 (331)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  219 (331)
                        +.... .......+++.+ +++++++-..+..+..++...... ..+.. . .......+++.| +++++++...++.
T Consensus        91 --~~~~~-~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~-~-~~~~p~~i~~~~-~g~~~v~~~~~~~  162 (260)
T d1rwia_          91 --VLPFD-GLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQ-TVLPF-T-GLNDPDGVAVDN-SGNVYVTDTDNNR  162 (260)
T ss_dssp             --ECCCC-SCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSC-EECCC-C-SCCSCCEEEECT-TCCEEEEEGGGTE
T ss_pred             --eeeee-eeeecccccccc-cceeEeecccccccccccccccee-eeeee-c-ccCCcceeeecC-CCCEeeecccccc
Confidence              22222 234567899997 777777777777787777765432 22221 1 234557899999 8888888888889


Q ss_pred             EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-cCCcceeeeeecCCCC
Q 020107          220 LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-KHGSLAYGADWQRGRS  298 (331)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~  298 (331)
                      |..+|.....  ..............|++.+++ .++++....+.  ++.+... +.....+. ..-....++++.+++ 
T Consensus       163 i~~~d~~~~~--~~~~~~~~~~~p~gi~~d~~g-~l~vsd~~~~~--i~~~~~~-~~~~~~~~~~~~~~P~~i~~d~~g-  235 (260)
T d1rwia_         163 VVKLEAESNN--QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQ--VVKLLAG-STTSTVLPFTGLNTPLAVAVDSDR-  235 (260)
T ss_dssp             EEEECTTTCC--EEECCCSSCCSEEEEEECTTC-CEEEEETTTTE--EEEECTT-CSCCEECCCCSCCCEEEEEECTTC-
T ss_pred             ccccccccce--eeeeeccccCCCccceeeeee-eeeeeecCCCE--EEEEeCC-CCeEEEEccCCCCCeEEEEEeCCC-
Confidence            9999977532  222123444567899999985 44444333444  5555443 23333332 223456799999988 


Q ss_pred             cccccccCcEEEEeecCCCeEEEEcCC
Q 020107          299 SLEGKRKNSLVATCSFYDRLLRIWMPE  325 (331)
Q Consensus       299 ~~~~~~~~~~l~s~~~~d~~i~iW~~~  325 (331)
                              .++++-. .+++|+..+..
T Consensus       236 --------~l~vad~-~~~rI~~i~~~  253 (260)
T d1rwia_         236 --------TVYVADR-GNDRVVKLTSL  253 (260)
T ss_dssp             --------CEEEEEG-GGTEEEEECCC
T ss_pred             --------CEEEEEC-CCCEEEEEeCC
Confidence                    5777665 67777766653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.02  E-value=1.1e-06  Score=68.54  Aligned_cols=231  Identities=8%  Similarity=0.035  Sum_probs=145.5

Q ss_pred             EeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEEcCCCC-eEEEE-ecCCeEEEEEc
Q 020107           69 IFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEWNPSAT-SITVG-LSDGSVSIVSV  134 (331)
Q Consensus        69 v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~~~~~~-~l~~~-~~dg~i~i~d~  134 (331)
                      ...|++.|+    ++++++-..+..| +++....-.           .......+++..+.. .+++. +.++.|..++.
T Consensus        25 P~gvavd~d----g~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          25 PSGVAVNAQ----NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             EEEEEECTT----CCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             ccEEEEcCC----CCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            578888888    7777666666666 665442110           112234555555443 33333 34567777776


Q ss_pred             cccceeeeeeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107          135 VESQLEVLQQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT  213 (331)
Q Consensus       135 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  213 (331)
                      . ++.  ...+. ........+++.+ ++.++++....+.+.+++.. ++....+.. ..+......+++.+ +++++++
T Consensus       101 ~-g~~--~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~-~~~~~~~~~i~~d~-~g~i~v~  173 (279)
T d1q7fa_         101 Y-GQF--VRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGC-SKHLEFPNGVVVND-KQEIFIS  173 (279)
T ss_dssp             T-SCE--EEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEEC-TTTCSSEEEEEECS-SSEEEEE
T ss_pred             c-ccc--eeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccc-cccccccceeeecc-ceeEEee
Confidence            4 322  33332 2334567888887 77788887778888888865 344444433 33667788999998 8888888


Q ss_pred             EecCCeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCeEEEEEecCc-EEEEEEcCcccceeEEeecC--Cccee
Q 020107          214 GSYDEYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGLVLAACMHNG-FAVVKVGGEKAEVLETYAKH--GSLAY  289 (331)
Q Consensus       214 ~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h--~~~v~  289 (331)
                      ....+.|++||...  +.+.++- .+.......|++.+++ .++++-...+. +.++   +..++.+.++...  .....
T Consensus       174 d~~~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f---~~~G~~~~~~~~~~~~~~p~  247 (279)
T d1q7fa_         174 DNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIF---TQDGQLISALESKVKHAQCF  247 (279)
T ss_dssp             EGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEE---CTTSCEEEEEEESSCCSCEE
T ss_pred             eccccceeeeecCC--ceeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEE---CCCCCEEEEEeCCCCCCCEe
Confidence            88899999999764  3343311 1233457889999997 55555443343 3333   3447777776532  34578


Q ss_pred             eeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      ++++.|++         .+++ +. .++.|++|+....
T Consensus       248 ~vav~~dG---------~l~V-~~-~n~~v~~fr~~~~  274 (279)
T d1q7fa_         248 DVALMDDG---------SVVL-AS-KDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEETTT---------EEEE-EE-TTTEEEEEECSCC
T ss_pred             EEEEeCCC---------cEEE-Ee-CCCeEEEEEeeee
Confidence            99999998         4544 56 6899999998654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.01  E-value=1.2e-06  Score=68.40  Aligned_cols=232  Identities=9%  Similarity=0.025  Sum_probs=143.5

Q ss_pred             ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-----ecCcEeEEEEcCCCCCCCCeEE
Q 020107           12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-----DTAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus        12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      +..|++.|.+   +++++-.          .++.|++||.+..-  +..+...     ....-..+++.++.   +..++
T Consensus        25 P~gvavd~dg---~i~VaD~----------~n~rI~v~d~~G~~--~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~   86 (279)
T d1q7fa_          25 PSGVAVNAQN---DIIVADT----------NNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNS---GDIIV   86 (279)
T ss_dssp             EEEEEECTTC---CEEEEEG----------GGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTT---TEEEE
T ss_pred             ccEEEEcCCC---CEEEEEC----------CCCEEEEEeCCCCE--EEEecccCCCcccccccccccccccc---cccce
Confidence            5677777765   6666654          48899999876532  2222111     11123445555442   33444


Q ss_pred             EEcC-CccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee--ecccceeEEEe
Q 020107           87 QADA-DGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW--KAHEFELWATS  156 (331)
Q Consensus        87 ~~~~-dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~  156 (331)
                      +... ++.+ .++......      .......++..+++..+++....+.+.+++... +.  +..+  ..+......++
T Consensus        87 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~--~~~~g~~~~~~~~~~i~  163 (279)
T d1q7fa_          87 TERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV--LHKFGCSKHLEFPNGVV  163 (279)
T ss_dssp             EECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE--EEEEECTTTCSSEEEEE
T ss_pred             eccCCccccccccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ce--eecccccccccccceee
Confidence            3332 2333 333322111      124457888999998888877788888888654 32  3333  23455677888


Q ss_pred             eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CCeEEEEEecCCCCCceee
Q 020107          157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DEYLRVWDVRSISKPVNET  235 (331)
Q Consensus       157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~  235 (331)
                      +.+ +++++++....+.|++||.. ++....+.. .+.......|++.+ +++++++-.. ++.|.+|+.. + +.+..+
T Consensus       164 ~d~-~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~-~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~-G-~~~~~~  237 (279)
T d1q7fa_         164 VND-KQEIFISDNRAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-G-QLISAL  237 (279)
T ss_dssp             ECS-SSEEEEEEGGGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-S-CEEEEE
T ss_pred             ecc-ceeEEeeeccccceeeeecC-Cceeeeecc-cccccCCccccccc-CCeEEEEECCCCcEEEEECCC-C-CEEEEE
Confidence            887 77888888889999999976 444444432 33455688999999 8887777544 4579999854 2 333332


Q ss_pred             ee-ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107          236 SV-CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG  272 (331)
Q Consensus       236 ~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
                      .. ......+.|++.|+  +.++++..++.+++|+...
T Consensus       238 ~~~~~~~~p~~vav~~d--G~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         238 ESKVKHAQCFDVALMDD--GSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EESSCCSCEEEEEEETT--TEEEEEETTTEEEEEECSC
T ss_pred             eCCCCCCCEeEEEEeCC--CcEEEEeCCCeEEEEEeee
Confidence            11 12345789999999  4566666778888887654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.01  E-value=8.8e-07  Score=70.36  Aligned_cols=241  Identities=12%  Similarity=0.051  Sum_probs=139.5

Q ss_pred             cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee----cCcEeEEEEcCCCCCCCCeEE
Q 020107           11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD----TAGIFDIKWSPVGGNAGPFLA   86 (331)
Q Consensus        11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~   86 (331)
                      .+..++|.|.+   +++++.......   ...+|+|..|+.++..  ...+....    ...-..++|.++    +..|+
T Consensus        19 g~EGpa~d~dG---~ly~~~~~~~~~---~~~~g~I~r~d~~~~~--~~~~~~~~~~~~~g~P~Gl~~~~d----g~~l~   86 (314)
T d1pjxa_          19 GAEGPVFDKNG---DFYIVAPEVEVN---GKPAGEILRIDLKTGK--KTVICKPEVNGYGGIPAGCQCDRD----ANQLF   86 (314)
T ss_dssp             TCEEEEECTTS---CEEEEETTCEET---TEECCEEEEECTTTCC--EEEEECCEETTEECCEEEEEECSS----SSEEE
T ss_pred             CCeEeEEeCCC---CEEEEECccccc---cccCCEEEEEECCCCc--EEEEECCccccCCCcceeEEEeCC----CCEEE
Confidence            35667777665   666654310000   0125678888887764  22222222    123578999999    77777


Q ss_pred             EEcCCccE-EEecCCCcc-------c---CccEEEEEEcCCCCeEEEEec---------------CCeEEEEEcccccee
Q 020107           87 QADADGGL-LRDITGEKI-------S---SSMCLCLEWNPSATSITVGLS---------------DGSVSIVSVVESQLE  140 (331)
Q Consensus        87 ~~~~dg~i-iw~~~~~~~-------~---~~~v~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~  140 (331)
                      ++.....+ ..+......       .   -...+.+.+.++|++.++-..               .|.|..++.+ ++. 
T Consensus        87 vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~-  164 (314)
T d1pjxa_          87 VADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-  164 (314)
T ss_dssp             EEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-
T ss_pred             EEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Cce-
Confidence            76655545 444443221       1   113567899999987666422               2445555543 222 


Q ss_pred             eeeeeecccceeEEEeeCCCCC----cEEEEEcCCCeEEEEEccCCCceee---eecc-cCCCcceEEEEEecCCCCEEE
Q 020107          141 VLQQWKAHEFELWATSFDVHQP----HMVYTGSDDCKFSGWDIRESPFKLA---FQNS-KIHKMGVCCIASIPSDSNTLL  212 (331)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~~l~  212 (331)
                       . .+...-...+.++|+|...    .++++-+..+.|..||+........   +... .......-.+++.+ ++++.+
T Consensus       165 -~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyV  241 (314)
T d1pjxa_         165 -I-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLV  241 (314)
T ss_dssp             -E-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEE
T ss_pred             -e-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEE
Confidence             1 1112223346788987322    2556667789999999875432221   1111 11233467899998 899888


Q ss_pred             EEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          213 TGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       213 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                      +....+.|.+||.+.. ..... .......+++++|.|+++.++++....+.+..+++
T Consensus       242 a~~~~g~I~~~dp~~g-~~~~~-i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         242 ANWGSSHIEVFGPDGG-QPKMR-IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEETTTEEEEECTTCB-SCSEE-EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             EEcCCCEEEEEeCCCC-EEEEE-EECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            8878899999998764 33433 23345678899999987445566555666444443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=9.8e-07  Score=68.27  Aligned_cols=214  Identities=14%  Similarity=0.078  Sum_probs=124.2

Q ss_pred             CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107           10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD   89 (331)
Q Consensus        10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   89 (331)
                      .++...+|+|++   +.||.....       .....+.+.+.....  .... ..+........|+|+    ++.++...
T Consensus        39 ~~~~sP~wSPDG---k~IAf~~~~-------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~spd----g~~i~~~~  101 (269)
T d2hqsa1          39 QPLMSPAWSPDG---SKLAYVTFE-------SGRSALVIQTLANGA--VRQV-ASFPRHNGAPAFSPD----GSKLAFAL  101 (269)
T ss_dssp             SCEEEEEECTTS---SEEEEEECT-------TSSCEEEEEETTTCC--EEEE-ECCSSCEEEEEECTT----SSEEEEEE
T ss_pred             CceeeeEECCCC---CEEEEEEee-------ccCcceeeeecccCc--eeEE-eeeecccccceecCC----CCeeeEee
Confidence            445567788887   888877621       122335555555443  3333 456778889999999    77776654


Q ss_pred             C-CccE-E--EecCCCcc-----cCccEEEEEEcCCCCeEEEE-ecCCe--EEEEEccccceeeeeeeecccceeEEEee
Q 020107           90 A-DGGL-L--RDITGEKI-----SSSMCLCLEWNPSATSITVG-LSDGS--VSIVSVVESQLEVLQQWKAHEFELWATSF  157 (331)
Q Consensus        90 ~-dg~i-i--w~~~~~~~-----~~~~v~~~~~~~~~~~l~~~-~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  157 (331)
                      . ++.. +  +.......     .........++++++.++.. ..+|.  |.+.++..+..   ..+...........|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~  178 (269)
T d2hqsa1         102 SKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADV  178 (269)
T ss_dssp             CTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEEEEEE
T ss_pred             ecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc---eeeeccccccccccc
Confidence            3 3333 2  22211111     23333455677777764444 44554  55555555432   233345566778899


Q ss_pred             CCCCCcEEEE-EcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCce
Q 020107          158 DVHQPHMVYT-GSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVN  233 (331)
Q Consensus       158 ~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~  233 (331)
                      +| ++..++. ....+...+|.............   +........|+| +|+.|+..+..   ..|.++++... .+ .
T Consensus       179 sp-dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg~-~~-~  251 (269)
T d2hqsa1         179 SS-DGKFMVMVSSNGGQQHIAKQDLATGGVQVLS---STFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGR-FK-A  251 (269)
T ss_dssp             CT-TSSEEEEEEECSSCEEEEEEETTTCCEEECC---CSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSC-CE-E
T ss_pred             cc-ccceeEEEeecCCceeeeEeecccccceEee---cCccccceEECC-CCCEEEEEEcCCCCcEEEEEECCCC-CE-E
Confidence            99 5555544 44555555555443332333333   455677889999 99888765543   46788888763 32 2


Q ss_pred             eeeeecCCceEEEEECCC
Q 020107          234 ETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       234 ~~~~~~~~~v~~~~~~~~  251 (331)
                      . +....+.+...+|+|-
T Consensus       252 ~-lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         252 R-LPATDGQVKFPAWSPY  268 (269)
T ss_dssp             E-CCCSSSEEEEEEECCC
T ss_pred             E-EeCCCCcEEeEEeCCC
Confidence            2 3556778888999983

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.83  E-value=4.5e-06  Score=66.36  Aligned_cols=200  Identities=5%  Similarity=-0.066  Sum_probs=122.5

Q ss_pred             EEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC----CCeEEEEEccCCC
Q 020107          108 CLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD----DCKFSGWDIRESP  183 (331)
Q Consensus       108 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~  183 (331)
                      +..++|.++|++.++-...+.|..|+...+..  ...+.........+++++ +++++++...    .+.+...+.....
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~--~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEI--KRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCE--EEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeE--EEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCce
Confidence            35788999998766666789999998876543  233333445678999998 7777776543    3345555555554


Q ss_pred             ceeeeecccCCCcceEEEEEecCCCCEEEEEec------CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE
Q 020107          184 FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY------DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL  257 (331)
Q Consensus       184 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  257 (331)
                      ....... ..-......+.+.| ++++.++...      .+.+..++...  ..+... ...-...+.++|+|+++.+++
T Consensus       119 ~~~~~~~-~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~~-~~~~~~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         119 LQDIIED-LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPI-IQNISVANGIALSTDEKVLWV  193 (319)
T ss_dssp             CEEEECS-SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS--CCEEEE-EEEESSEEEEEECTTSSEEEE
T ss_pred             eeeeccC-CCcccCCcceeEEe-ccceeecccccccccCcceeEEEeccc--ceeEEE-eeccceeeeeeeccccceEEE
Confidence            3333322 11234578899999 8887666432      12344444332  333331 223344678999999844566


Q ss_pred             EEEecCcEEEEEEcCcccceeEEe-------ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          258 AACMHNGFAVVKVGGEKAEVLETY-------AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      +-...+.+..+++.... ......       ........++++.+++         ++.++.. ..+.|.+++.+.
T Consensus       194 ad~~~~~I~~~d~~~~g-~~~~~~~~~~~~~~~~~~~PdGl~vD~~G---------~l~Va~~-~~g~V~~~~p~G  258 (319)
T d2dg1a1         194 TETTANRLHRIALEDDG-VTIQPFGATIPYYFTGHEGPDSCCIDSDD---------NLYVAMY-GQGRVLVFNKRG  258 (319)
T ss_dssp             EEGGGTEEEEEEECTTS-SSEEEEEEEEEEECCSSSEEEEEEEBTTC---------CEEEEEE-TTTEEEEECTTS
T ss_pred             ecccCCceEEEEEcCCC-ceeccccceeeeccCCccceeeeeEcCCC---------CEEEEEc-CCCEEEEECCCC
Confidence            66667787777776542 211111       1112235678998888         6777766 789999999753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.73  E-value=2.6e-05  Score=61.75  Aligned_cols=217  Identities=9%  Similarity=-0.007  Sum_probs=131.2

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEec----CCeEEEEEccc
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLS----DGSVSIVSVVE  136 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~  136 (331)
                      .+..++|.++    +++.++-...+.| .++..+...      .......++++++|+++++...    .+.+...+...
T Consensus        41 ~lEG~~~D~~----G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          41 QLEGLNFDRQ----GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CEEEEEECTT----SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             CcEeCEECCC----CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            3578999988    8877777778877 666655432      2345678999999987776543    23455555554


Q ss_pred             cceeeeeeeecccceeEEEeeCCCCCcEEEEEcC------CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107          137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD------DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  210 (331)
                      ........-.........+++.+ ++++.++-..      .+.+..++..... ...+..   .-...+.|+|+| +++.
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~---~~~~pnGia~s~-dg~~  190 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQ---NISVANGIALST-DEKV  190 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEE---EESSEEEEEECT-TSSE
T ss_pred             ceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccce-eEEEee---ccceeeeeeecc-ccce
Confidence            43322211111233467889998 7776665432      2335555544333 222222   234567899999 7775


Q ss_pred             E-EEEecCCeEEEEEecCCCCCceeee------eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-
Q 020107          211 L-LTGSYDEYLRVWDVRSISKPVNETS------VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-  282 (331)
Q Consensus       211 l-~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  282 (331)
                      | ++-+..+.|..||+...........      .........+++.+++ .++++....+.+  +.+... ++.+.++. 
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V--~~~~p~-G~~l~~i~~  266 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRV--LVFNKR-GYPIGQILI  266 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEE--EEECTT-SCEEEEEEC
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEE--EEECCC-CcEEEEEeC
Confidence            5 5556788999999876433222100      1112335679999986 566666666664  444443 77777765 


Q ss_pred             -----cCCcceeeeeecCCCC
Q 020107          283 -----KHGSLAYGADWQRGRS  298 (331)
Q Consensus       283 -----~h~~~v~~~~~~~~~~  298 (331)
                           ++...+++++|.+...
T Consensus       267 P~~~~~~~~~~~~~~~~~~~~  287 (319)
T d2dg1a1         267 PGRDEGHMLRSTHPQFIPGTN  287 (319)
T ss_dssp             TTGGGTCSCBCCEEEECTTSC
T ss_pred             CCcCCCcCceeeeEEEeCCCC
Confidence                 2344678999988774

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.63  E-value=4.8e-05  Score=59.45  Aligned_cols=219  Identities=11%  Similarity=0.022  Sum_probs=130.7

Q ss_pred             EEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee
Q 020107           72 IKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK  146 (331)
Q Consensus        72 ~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  146 (331)
                      ..|.+..   +.+..+--..+.| .|+..+++.    ....+.++++.+++.++++ +.+ .|.++|..+++...+....
T Consensus        23 p~wd~~~---~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          23 PTFDPAS---GTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEETTT---TEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CeEECCC---CEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            3455541   2333333334444 455444332    2456778888888766654 454 5889999988764443332


Q ss_pred             c--ccceeEEEeeCCCCCcEEEEEcC----CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE-EEEEecCCe
Q 020107          147 A--HEFELWATSFDVHQPHMVYTGSD----DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT-LLTGSYDEY  219 (331)
Q Consensus       147 ~--~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~d~~  219 (331)
                      .  ....++.+.+.| ++++.++...    .+.-.+|.+..++.......    -...+.+.|++ +++. +++-+..+.
T Consensus        98 ~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~----~~~~Ng~~~s~-d~~~l~~~dt~~~~  171 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD----ISIPNSICFSP-DGTTGYFVDTKVNR  171 (295)
T ss_dssp             TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE----ESSEEEEEECT-TSCEEEEEETTTCE
T ss_pred             cCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCcEEEEeec----cCCcceeeecC-CCceEEEeecccce
Confidence            2  224678899998 6676655432    23456677766654333332    34567899999 6664 556667788


Q ss_pred             EEEEEecCCCCC----cee--eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeee
Q 020107          220 LRVWDVRSISKP----VNE--TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADW  293 (331)
Q Consensus       220 i~iwd~~~~~~~----~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  293 (331)
                      |..|++......    ...  ......+....+++..++ +++++.-..+.  ++.+... ++.+..+.-....+++++|
T Consensus       172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~--V~~~dp~-G~~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGA--VDRYDTD-GNHIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTE--EEEECTT-CCEEEEEECSCSBEEEEEE
T ss_pred             eeEeeecccccccccceEEEeccCcccccccceEEcCCC-CEEeeeeCCCc--eEEecCC-CcEeeEecCCCCceEEEEE
Confidence            999988542111    111  011234567889998886 55555545555  4444443 7888888766677999999


Q ss_pred             c-CCCCcccccccCcEEEEee
Q 020107          294 Q-RGRSSLEGKRKNSLVATCS  313 (331)
Q Consensus       294 ~-~~~~~~~~~~~~~~l~s~~  313 (331)
                      - ++..        .+++|.+
T Consensus       248 GG~d~~--------~LyvTta  260 (295)
T d2ghsa1         248 IGPDAS--------RLLVTSA  260 (295)
T ss_dssp             ESTTSC--------EEEEEEB
T ss_pred             eCCCCC--------EEEEEEC
Confidence            6 5543        5667655

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.52  E-value=0.0001  Score=57.46  Aligned_cols=204  Identities=10%  Similarity=-0.004  Sum_probs=130.1

Q ss_pred             CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc----------cCccEEEE
Q 020107           42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI----------SSSMCLCL  111 (331)
Q Consensus        42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~----------~~~~v~~~  111 (331)
                      ..+.|.-||.+++.  ....  .....+.++++.++    +.++++ +.+|..+++..+++.          ....++.+
T Consensus        38 ~~~~I~r~d~~~g~--~~~~--~~~~~~~~i~~~~d----g~l~va-~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~  108 (295)
T d2ghsa1          38 LERELHELHLASGR--KTVH--ALPFMGSALAKISD----SKQLIA-SDDGLFLRDTATGVLTLHAELESDLPGNRSNDG  108 (295)
T ss_dssp             GGTEEEEEETTTTE--EEEE--ECSSCEEEEEEEET----TEEEEE-ETTEEEEEETTTCCEEEEECSSTTCTTEEEEEE
T ss_pred             CCCEEEEEECCCCe--EEEE--ECCCCcEEEEEecC----CCEEEE-EeCccEEeecccceeeEEeeeecCCCcccceee
Confidence            47889999988874  3322  12456888998888    666654 556766777766543          13457889


Q ss_pred             EEcCCCCeEEEEec----CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc---
Q 020107          112 EWNPSATSITVGLS----DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF---  184 (331)
Q Consensus       112 ~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---  184 (331)
                      .+.|+|++.++...    .+.-.+|.+..++...  ... .-.....++|++....++++-+..+.|..+++.....   
T Consensus       109 ~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~--~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~  185 (295)
T d2ghsa1         109 RMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK--LFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT  185 (295)
T ss_dssp             EECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE--EEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred             EECCCCCEEEEeccccccccceeEeeecCCcEEE--Eee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccc
Confidence            99999987665543    2344567666664322  222 2334578999985555677777889999998753211   


Q ss_pred             --eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEEC-CCCCCeEEEEEe
Q 020107          185 --KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHH-PFIPGLVLAACM  261 (331)
Q Consensus       185 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~  261 (331)
                        ...+............+++.. ++++.++.-..+.|..||...  +.+..+ .-....+++++|- |+.+.++++++.
T Consensus       186 ~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp~G--~~~~~i-~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         186 GKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTDG--NHIARY-EVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             SCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTTC--CEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             cceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecCCC--cEeeEe-cCCCCceEEEEEeCCCCCEEEEEECC
Confidence              112222122355678899988 888887777788999999653  445542 2223568999996 565455555554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=7e-06  Score=68.76  Aligned_cols=154  Identities=11%  Similarity=0.009  Sum_probs=94.7

Q ss_pred             EEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee-cccceeEEEeeCCCCCcEEEEEc---------CCCeEEEEEcc
Q 020107          111 LEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK-AHEFELWATSFDVHQPHMVYTGS---------DDCKFSGWDIR  180 (331)
Q Consensus       111 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~  180 (331)
                      ..|.+++.++. -..+|.|.+||+.+++...+.... .....+....|+| +++.++...         ..+.+.++|+.
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            46888877654 355789999999987643322221 1223567788999 667666543         35788999999


Q ss_pred             CCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc-----------------e
Q 020107          181 ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG-----------------V  243 (331)
Q Consensus       181 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----------------v  243 (331)
                      ++........ ......+....|+| +++.+|-.. ++.|.+.+.... ........+..+.                 -
T Consensus       100 ~~~~~~l~~~-~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~-~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1         100 HGDPQSLDPP-EVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGK-QAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             SCCCEECCCT-TCCSCCCSBCCBCS-STTCEEEEE-TTEEEEESSSSS-CCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             CCceeeccCc-cCCccccceeeecc-CCceEEEEe-cceEEEEecCCC-ceEEEecccCcceeeccccchhhhhhhcccc
Confidence            8875443322 22345566789999 998888765 677888887664 3332211121111                 2


Q ss_pred             EEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107          244 WRIKHHPFIPGLVLAACMHNGFAVVKV  270 (331)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (331)
                      ..+.|||++..+++..-.+..+..+.+
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             ceEEECCCCCeEEEEEecccccceeec
Confidence            467899998444444434444445544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=0.00021  Score=59.54  Aligned_cols=277  Identities=8%  Similarity=0.000  Sum_probs=139.9

Q ss_pred             ecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcE-----------------eEEEEcCCCCC
Q 020107           18 CPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGI-----------------FDIKWSPVGGN   80 (331)
Q Consensus        18 ~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~   80 (331)
                      ..++|+|+.||...           ++.|.+.+...+. ..+....+....|                 .++.|||+   
T Consensus       119 ~~wSPDG~~iafv~-----------~~nl~~~~~~~~~-~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPD---  183 (465)
T d1xfda1         119 AGWGPKGQQLIFIF-----------ENNIYYCAHVGKQ-AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD---  183 (465)
T ss_dssp             CCBCSSTTCEEEEE-----------TTEEEEESSSSSC-CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT---
T ss_pred             eeeccCCceEEEEe-----------cceEEEEecCCCc-eEEEecccCcceeeccccchhhhhhhccccceEEECCC---
Confidence            33344448899886           8889888887654 3333322222212                 47889999   


Q ss_pred             CCCeEEEEcCCcc-E-EEecCCC-cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeee----eeecccceeE
Q 020107           81 AGPFLAQADADGG-L-LRDITGE-KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ----QWKAHEFELW  153 (331)
Q Consensus        81 ~~~~l~~~~~dg~-i-iw~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~v~  153 (331)
                       ++.||....|-. + .+.+... ......+..+.+..-|...    ....+.++|++.+......    .......-+.
T Consensus       184 -gk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~n----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~  258 (465)
T d1xfda1         184 -GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT  258 (465)
T ss_dssp             -SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred             -CCeEEEEEecccccceeecccccccccceeeeeeccccCCCC----CceeEEEEecCCCcEEEEEeccCcCccccceee
Confidence             899988765433 3 4433221 1112223344443222211    1235778888765432111    1122334578


Q ss_pred             EEeeCCCCCcEEEEEc-CC---CeEEEEEccCCCceeeeecccCCCcce----EEEEEecCCCCEEEE--Ee-cCC--eE
Q 020107          154 ATSFDVHQPHMVYTGS-DD---CKFSGWDIRESPFKLAFQNSKIHKMGV----CCIASIPSDSNTLLT--GS-YDE--YL  220 (331)
Q Consensus       154 ~~~~~~~~~~~l~~~~-~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~l~~--~~-~d~--~i  220 (331)
                      .+.|.| ++++++... ++   ..+.++|..++++...+...  ....|    ....|+| ++..++.  .+ .+|  .+
T Consensus       259 ~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~--~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~l  334 (465)
T d1xfda1         259 MVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE--SEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKF  334 (465)
T ss_dssp             EEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE--CSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCE
T ss_pred             eeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc--CCceEeccCCceeEcc-CCCeeEEEEeeeecccCce
Confidence            899998 666555432 22   36788999988865554431  22222    2356788 6654321  22 232  34


Q ss_pred             EEEEecCC-----CCCceeeeeecCCceEEE-EECCCCCCeEEEEEecC--cEEEEEEcCcccceeEEee---cCCccee
Q 020107          221 RVWDVRSI-----SKPVNETSVCLGGGVWRI-KHHPFIPGLVLAACMHN--GFAVVKVGGEKAEVLETYA---KHGSLAY  289 (331)
Q Consensus       221 ~iwd~~~~-----~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~h~~~v~  289 (331)
                      ...++...     ...... +....-.|..+ .|.++++..++++..++  ..++|.+.-........+.   .......
T Consensus       335 y~~~~~~~~~~~~~~~~~~-LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~  413 (465)
T d1xfda1         335 YHITVSSSQPNSSNDNIQS-ITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYF  413 (465)
T ss_dssp             EEEEEECSSCCSSSCCCCB-SCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCC
T ss_pred             EEEEeccccccCCCceeEE-eccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEE
Confidence            44443211     111111 12233345564 68887745555543322  3356776543222222121   2344567


Q ss_pred             eeeecCCCCcccccccCcEEEEeec-CCCeEEEEcCCCc
Q 020107          290 GADWQRGRSSLEGKRKNSLVATCSF-YDRLLRIWMPESD  327 (331)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~s~~~-~d~~i~iW~~~~~  327 (331)
                      ++.|||++.        .++.+++. .--.+.+++..++
T Consensus       414 ~~~~S~~~~--------y~v~~~s~~~~P~~~~~~~~~~  444 (465)
T d1xfda1         414 SASFSHSMD--------FFLLKCEGPGVPMVTVHNTTDK  444 (465)
T ss_dssp             EEEECTTSS--------EEEEECCSSSSCCEEEEETTTC
T ss_pred             EEEECCCCC--------EEEEEeecCCCCeEEEEECCCC
Confidence            899999984        33334431 1234566665544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.17  E-value=0.00024  Score=54.54  Aligned_cols=96  Identities=10%  Similarity=-0.017  Sum_probs=61.9

Q ss_pred             EcCC--CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CC-----CeEEEEEccCCCc
Q 020107          113 WNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DD-----CKFSGWDIRESPF  184 (331)
Q Consensus       113 ~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~  184 (331)
                      .+|+  |+.++..+ +|.|.+.|+.+++.   ..+..+...+...+|+| +++.|+... .+     ..|.+++..+++.
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~---~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST---RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCE---EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCE---EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            5688  88877654 46788889998764   34455666788999999 677666443 22     2477777777654


Q ss_pred             eeeeecc---cCCCcceEEEEEecCCCCEEEEE
Q 020107          185 KLAFQNS---KIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       185 ~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      .......   ...........|+| +++.|+..
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~  112 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDP-DGNLIIST  112 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECT-TCCEEEEE
T ss_pred             EEeeecCCCccCccccccccccCC-CCCEEEEE
Confidence            3322210   01223456788999 88877764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.13  E-value=0.00074  Score=51.63  Aligned_cols=84  Identities=10%  Similarity=0.061  Sum_probs=56.1

Q ss_pred             CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC-Ccc-----E-EE
Q 020107           24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA-DGG-----L-LR   96 (331)
Q Consensus        24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~-----i-iw   96 (331)
                      |+.+|..+           +|.|.+.++++++  .+.+ ..+.+.+...+|||+    ++.||-... ++.     + +.
T Consensus        12 G~~v~f~~-----------~~dl~~~d~~~g~--~~~L-t~~~~~~~~p~~SPD----G~~iaf~~~~~~~~~~~~i~~~   73 (281)
T d1k32a2          12 GDRIIFVC-----------CDDLWEHDLKSGS--TRKI-VSNLGVINNARFFPD----GRKIAIRVMRGSSLNTADLYFY   73 (281)
T ss_dssp             TTEEEEEE-----------TTEEEEEETTTCC--EEEE-ECSSSEEEEEEECTT----SSEEEEEEEESTTCCEEEEEEE
T ss_pred             CCEEEEEe-----------CCcEEEEECCCCC--EEEE-ecCCCcccCEEECCC----CCEEEEEEeeCCCCCceEEEEE
Confidence            47888776           7889999998875  4444 456677899999999    888875532 222     2 44


Q ss_pred             ecCCCccc------------CccEEEEEEcCCCCeEEEEec
Q 020107           97 DITGEKIS------------SSMCLCLEWNPSATSITVGLS  125 (331)
Q Consensus        97 ~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~  125 (331)
                      +..+++..            ........|+|+++.|+....
T Consensus        74 ~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          74 NGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             ETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             EecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            44443321            123456789999999887643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=0.0016  Score=49.68  Aligned_cols=230  Identities=8%  Similarity=-0.051  Sum_probs=129.0

Q ss_pred             CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc-CCccE-EEecCCCcc----------cCccEEE
Q 020107           43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD-ADGGL-LRDITGEKI----------SSSMCLC  110 (331)
Q Consensus        43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i-iw~~~~~~~----------~~~~v~~  110 (331)
                      ...|+-.++++.+  ...+.. ....+.+|+|.+.    .+.|.-.. ..+.+ -.++.....          ....+..
T Consensus         9 ~~~I~~~~l~~~~--~~~~~~-~~~~~~~id~d~~----~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1           9 RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVA----SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             BSSEEEEETTSCC--CEEEEC-SCSSEEEEEEETT----TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             CCeEEEEECCCCc--ceeeeC-CCCceEEEEEEeC----CCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence            5569889998764  344422 4456789999988    56666554 34444 222221110          1233557


Q ss_pred             EEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEE-cCCCeEEEEEccCCCceeee
Q 020107          111 LEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTG-SDDCKFSGWDIRESPFKLAF  188 (331)
Q Consensus       111 ~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~  188 (331)
                      +++.+.+..|..+. ..+.|.+.++.....  ...+.........++++|..+.++.+- +..+.|.-.++.........
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~--~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~  159 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  159 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSE--EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceE--EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence            88887777776665 467899999886543  222333445678899998555555553 23456777777654333222


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec--CCceEEEEECCCCCCeEEEEEecCcEE
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL--GGGVWRIKHHPFIPGLVLAACMHNGFA  266 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~  266 (331)
                      ..   .-.....+++.+..+.+..+-...+.|...|+.........  ...  ......++...+  .++.+-...+.  
T Consensus       160 ~~---~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~--~~~~~~~~p~~lav~~~--~ly~td~~~~~--  230 (266)
T d1ijqa1         160 TE---NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL--EDEKRLAHPFSLAVFED--KVFWTDIINEA--  230 (266)
T ss_dssp             CS---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--ECTTTTSSEEEEEEETT--EEEEEETTTTE--
T ss_pred             cc---ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEE--eCCCcccccEEEEEECC--EEEEEECCCCe--
Confidence            22   34567899999833444444456788999998764322221  222  233566777643  44444334454  


Q ss_pred             EEEEcCcccceeEEeecCCcceee
Q 020107          267 VVKVGGEKAEVLETYAKHGSLAYG  290 (331)
Q Consensus       267 ~~~~~~~~~~~~~~~~~h~~~v~~  290 (331)
                      ++.+....+.....+......+.+
T Consensus       231 I~~~~~~~g~~~~~~~~~~~~p~~  254 (266)
T d1ijqa1         231 IFSANRLTGSDVNLLAENLLSPED  254 (266)
T ss_dssp             EEEEETTTCCCCEEEECSCSCCCC
T ss_pred             EEEEECCCCcceEEEEcCCCCceE
Confidence            555544444444444443333333

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=0.0017  Score=49.42  Aligned_cols=202  Identities=8%  Similarity=-0.060  Sum_probs=109.8

Q ss_pred             EEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107          108 CLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL  186 (331)
Q Consensus       108 v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  186 (331)
                      +.+++|++..+.|+.+. .++.|+..+++....+  ..+......+..+++....+++..+-...+.|.+.++.......
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~--~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE--EEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            34455555555555443 3566777777654332  12222224567788875455666666778899999998665433


Q ss_pred             eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107          187 AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFA  266 (331)
Q Consensus       187 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  266 (331)
                      .+..   ....+..++++|..+.++.+-...+..+|+-..........+....-.....+++.+..+.++.+-...+.+.
T Consensus       116 l~~~---~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         116 LFDT---GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             EECS---SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             Eecc---cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            3332   3456899999994554444433323334544332222222222233356788999887634444444455655


Q ss_pred             EEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107          267 VVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC  328 (331)
Q Consensus       267 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~  328 (331)
                      ..++...  .....+.+-. ...++++.. +         .+..+-. ..+.|..-|..++.
T Consensus       193 ~~~~~g~--~~~~v~~~~~-~P~~lav~~-~---------~lYwtd~-~~~~I~~~~~~~g~  240 (263)
T d1npea_         193 CLNPAQP--GRRKVLEGLQ-YPFAVTSYG-K---------NLYYTDW-KTNSVIAMDLAISK  240 (263)
T ss_dssp             EEETTEE--EEEEEEECCC-SEEEEEEET-T---------EEEEEET-TTTEEEEEETTTTE
T ss_pred             EEECCCC--CeEEEECCCC-CcEEEEEEC-C---------EEEEEEC-CCCEEEEEECCCCc
Confidence            5555432  2222233322 235777763 2         4555554 67888887776653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=0.0057  Score=46.33  Aligned_cols=237  Identities=9%  Similarity=0.041  Sum_probs=134.1

Q ss_pred             CCcEEEEeccCccc---ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc-CCccE-EEecCCCcc------cCccEEEE
Q 020107           43 NGSISLFNVNAEEK---NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD-ADGGL-LRDITGEKI------SSSMCLCL  111 (331)
Q Consensus        43 ~g~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i-iw~~~~~~~------~~~~v~~~  111 (331)
                      .+.|+-.+++....   ........+...+.+|+|.+.    .+.|.-+. .++.| ..++.+...      ....+.++
T Consensus         9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~----~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~i   84 (263)
T d1npea_           9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV----DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGI   84 (263)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT----TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEE
T ss_pred             CCeEEEEECCCccccccccccccccCCCcEEEEEEEeC----CCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEE
Confidence            66888888865431   122333444556888999988    55666554 44555 334443322      12456788


Q ss_pred             EEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC--eEEEEEccCCCceeee
Q 020107          112 EWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC--KFSGWDIRESPFKLAF  188 (331)
Q Consensus       112 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~  188 (331)
                      ++..-+..|+.+. ..+.|.+.++.......  .+.........++++|..+.++.+-...+  .|.--++.........
T Consensus        85 AvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~--l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~  162 (263)
T d1npea_          85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV--LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA  162 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE
T ss_pred             EEeccCCeEEEeccCCCEEEEEecCCceEEE--EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee
Confidence            8887677776554 47799999988654322  22223356789999986655555543323  3444455544323222


Q ss_pred             ecccCCCcceEEEEEecCCCCEE-EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEE
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTL-LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAV  267 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  267 (331)
                      ..   .-.....|++.+ ..+.| .+-...+.|...|+....  ......... ....|++..+  .++.+-...+.  +
T Consensus       163 ~~---~~~~P~glaiD~-~~~~lYw~d~~~~~I~~~~~~g~~--~~~v~~~~~-~P~~lav~~~--~lYwtd~~~~~--I  231 (263)
T d1npea_         163 QD---NLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPG--RRKVLEGLQ-YPFAVTSYGK--NLYYTDWKTNS--V  231 (263)
T ss_dssp             CT---TCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEE--EEEEEECCC-SEEEEEEETT--EEEEEETTTTE--E
T ss_pred             ee---cccccceEEEee-cCcEEEEEeCCCCEEEEEECCCCC--eEEEECCCC-CcEEEEEECC--EEEEEECCCCE--E
Confidence            22   335678999998 55555 444567889988887532  222223322 3457777632  44444434455  6


Q ss_pred             EEEcCcccceeEEee-cCCcceeeeeecCC
Q 020107          268 VKVGGEKAEVLETYA-KHGSLAYGADWQRG  296 (331)
Q Consensus       268 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~  296 (331)
                      +.+....++....+. .......+++..++
T Consensus       232 ~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         232 IAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             EEEECCCCccceEECCCCCCCcceEEEeCC
Confidence            666555456555543 33345556665554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.0059  Score=46.35  Aligned_cols=206  Identities=9%  Similarity=-0.077  Sum_probs=118.2

Q ss_pred             ccEEEEEEcCCCCeEEEEec-CCeEEEEEccccce--eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC
Q 020107          106 SMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQL--EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES  182 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  182 (331)
                      ..+.+++|++..+.|+-... .+.|.-.++.....  .....+......+..+++.+..+++..+-...+.|.+.++...
T Consensus        30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~  109 (266)
T d1ijqa1          30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (266)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCc
Confidence            34568899988888777654 66677666653211  1111222223446677777656677777777889999999866


Q ss_pred             CceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107          183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  261 (331)
                      ........   .......++++|..+.++.+.. ..+.|.-.++..  .....+....-.....+++.+.++.++.+-..
T Consensus       110 ~~~~~~~~---~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG--s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~  184 (266)
T d1ijqa1         110 KRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  184 (266)
T ss_dssp             SEEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEEcC---CCCCcceEEEEcccCeEEEeccCCCcceeEeccCC--CceecccccccceeeEEEeeccccEEEEecCC
Confidence            54333433   4566899999994454444432 334566666554  22333222333567889999876445555455


Q ss_pred             cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107          262 HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD  327 (331)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~  327 (331)
                      .+.|...++.....+.+...........++++..+          .+..+-. .++.|...+..++
T Consensus       185 ~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~----------~ly~td~-~~~~I~~~~~~~g  239 (266)
T d1ijqa1         185 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED----------KVFWTDI-INEAIFSANRLTG  239 (266)
T ss_dssp             TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT----------EEEEEET-TTTEEEEEETTTC
T ss_pred             cCEEEEEECCCCCEEEEEeCCCcccccEEEEEECC----------EEEEEEC-CCCeEEEEECCCC
Confidence            56655555544322222222222334567777643          4566655 6778877776554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.42  E-value=0.011  Score=47.32  Aligned_cols=200  Identities=11%  Similarity=0.083  Sum_probs=117.4

Q ss_pred             EEEEcC---CCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEeeCCC-CCcEEEEEcCC-------------
Q 020107          110 CLEWNP---SATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH-QPHMVYTGSDD-------------  171 (331)
Q Consensus       110 ~~~~~~---~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d-------------  171 (331)
                      .+++..   ||+++++... +.+|.+.|+++.+...+..+. ....+..+...+. +..+++..+..             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            444543   7888877765 899999999987654444443 3334555554431 34566665542             


Q ss_pred             -----CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----------------------------
Q 020107          172 -----CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----------------------------  217 (331)
Q Consensus       172 -----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------------------------  217 (331)
                           +.+.+.|..+.+....+..    ......+.++| +++++++.+.+                             
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V----~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~a  242 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLV----SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  242 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEE----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             hhhcceEEEEEecCCceEEEEeee----CCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHh
Confidence                 2356788887776555554    34566788999 88888887643                             


Q ss_pred             ---------CeEEEEEecCC-CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--------cc-ee
Q 020107          218 ---------EYLRVWDVRSI-SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK--------AE-VL  278 (331)
Q Consensus       218 ---------~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~  278 (331)
                               +.+.+-|.+.. ...+.. ..+-......+..+||+...+++...+..+.++++....        .+ .+
T Consensus       243 v~~Gk~~eingV~VVD~~~~~~~~v~~-yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~  321 (459)
T d1fwxa2         243 IAAGDYQELNGVKVVDGRKEASSLFTR-YIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  321 (459)
T ss_dssp             HHHTCSEEETTEEEEECSGG--CSSEE-EEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE
T ss_pred             hhcCCcEEeCCceeecccccCCcceeE-EEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE
Confidence                     22344444431 111211 234445567889999985555555567888899986532        01 11


Q ss_pred             EEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          279 ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       279 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      ..-....-.-...+|...+         ....|. +-|.+|.-|+++.
T Consensus       322 ~~e~elglgPLht~fd~~g---------~aytsl-fids~v~kw~~~~  359 (459)
T d1fwxa2         322 VAEPELGLGPLHTAFDGRG---------NAYTSL-FLDSQVVKWNIED  359 (459)
T ss_dssp             EECCBCCSCEEEEEECTTS---------EEEEEE-TTTTEEEEEEHHH
T ss_pred             EeecccCcCccccccCCCc---------eEEEEe-eccceEEEEecch
Confidence            1111111223345666665         344444 4899999999853

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.38  E-value=0.016  Score=43.99  Aligned_cols=188  Identities=11%  Similarity=0.135  Sum_probs=124.2

Q ss_pred             CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCC
Q 020107           22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGE  101 (331)
Q Consensus        22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~  101 (331)
                      |..+.||.-+           ...+++||++..+ +++..  .....|.--.|-.+     +.|+..+.....-|+++..
T Consensus        72 P~~~IiALra-----------g~~LQiFnletK~-klks~--~~~e~VvfWkWis~-----~~L~lVT~taVYHW~~~g~  132 (327)
T d1utca2          72 PASKVIALKA-----------GKTLQIFNIEMKS-KMKAH--TMTDDVTFWKWISL-----NTVALVTDNAVYHWSMEGE  132 (327)
T ss_dssp             SSSSEEEEEE-----------TTEEEEEETTTTE-EEEEE--ECSSCCCEEEESSS-----SEEEEECSSEEEEEESSSS
T ss_pred             CCCcEEEEec-----------CCeEEEEehhHhh-hhceE--EcCCCcEEEEecCC-----CEEEEEcCCceEEEcccCC
Confidence            3347888887           7789999999876 34333  23456777788765     3777777666669998653


Q ss_pred             cc-----------cCccEEEEEEcCCCCeEEEEe-------cCCeEEEEEccccceeeeeeeecccceeEEEeeCCC--C
Q 020107          102 KI-----------SSSMCLCLEWNPSATSITVGL-------SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH--Q  161 (331)
Q Consensus       102 ~~-----------~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~--~  161 (331)
                      ..           ....|..-..+++.+.++..+       -.|.+.+|..+.+.   .+.+.+|......+...-.  .
T Consensus       133 s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~  209 (327)
T d1utca2         133 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEE  209 (327)
T ss_dssp             CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE---EEEECCSEEEEEEECCTTCSSC
T ss_pred             CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc---CccccceeeeeEEEEcCCCCCC
Confidence            22           245677777888888865543       14778999988653   4567788776666655421  1


Q ss_pred             CcEEEEEc---CCCeEEEEEccCCCc-eeee-----ec---ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107          162 PHMVYTGS---DDCKFSGWDIRESPF-KLAF-----QN---SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       162 ~~~l~~~~---~dg~i~i~d~~~~~~-~~~~-----~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      ..+++.+.   ..+.+++.++..... ...+     ..   .....+-..++..++ .-..++.-+.-|.|++||+.++ 
T Consensus       210 ~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTg-  287 (327)
T d1utca2         210 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETG-  287 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTC-
T ss_pred             ceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccc-
Confidence            23443332   346899999876321 1111     11   122355677899998 7788999999999999999996 


Q ss_pred             CCce
Q 020107          230 KPVN  233 (331)
Q Consensus       230 ~~~~  233 (331)
                      .++.
T Consensus       288 t~i~  291 (327)
T d1utca2         288 TCIY  291 (327)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            4443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.28  E-value=0.029  Score=44.89  Aligned_cols=200  Identities=9%  Similarity=0.017  Sum_probs=116.6

Q ss_pred             eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCcc
Q 020107           14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGG   93 (331)
Q Consensus        14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~   93 (331)
                      .+.+-.-.++|++|.+..         ..+++|.+-|++..+ ..+.+.-.....+..++..++..  ..+++..+.+..
T Consensus        89 ~~S~TdGtyDGrylFVND---------kan~RVAvIdl~~fk-t~kIi~iPn~~~~HG~r~~~~p~--T~YV~~~~e~~v  156 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMND---------KANTRVARVRCDVMK-CDAILEIPNAKGIHGLRPQKWPR--SNYVFCNGEDET  156 (459)
T ss_dssp             EEEEETTEEEEEEEEEEE---------TTTTEEEEEETTTTE-EEEEEECSSCCSEEEEEECCSSB--CSEEEEEECSCE
T ss_pred             cccccCCccceeEEEEEc---------CCCceEEEEECccee-eeEEEecCCCCCCceeecccCCC--eEEEEccCcccc
Confidence            555554455678888886         368999999999876 32333223345577777765421  567777666443


Q ss_pred             E-------------------EEecCCCccc-----CccEEEEEEcCCCCeEEEEecCC---------------eEEEEEc
Q 020107           94 L-------------------LRDITGEKIS-----SSMCLCLEWNPSATSITVGLSDG---------------SVSIVSV  134 (331)
Q Consensus        94 i-------------------iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg---------------~i~i~d~  134 (331)
                      .                   ..|..+.+..     ......++++++|+++++.+.+.               .+.+++.
T Consensus       157 P~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~  236 (459)
T d1fwxa2         157 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI  236 (459)
T ss_dssp             ESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred             ccCCCCccccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEech
Confidence            1                   3344433321     33445788999999988876431               1333333


Q ss_pred             -----------------------cccc-eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc------
Q 020107          135 -----------------------VESQ-LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF------  184 (331)
Q Consensus       135 -----------------------~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------  184 (331)
                                             +... ...+..+. -......+..+|+....++++.-+.++.++|+++-..      
T Consensus       237 ~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~  315 (459)
T d1fwxa2         237 AEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA  315 (459)
T ss_dssp             HHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred             HHhHHhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccC
Confidence                                   2210 01111121 1223557889994444555666789999999974211      


Q ss_pred             --eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107          185 --KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       185 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                        ...+.......-....-+|.. .++-..+.--|..|.-|++..
T Consensus       316 ~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         316 DPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             -GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred             CccccEEeecccCcCccccccCC-CceEEEEeeccceEEEEecch
Confidence              111112122344566778887 776666666899999999853

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.81  E-value=0.08  Score=41.97  Aligned_cols=143  Identities=8%  Similarity=-0.000  Sum_probs=83.2

Q ss_pred             CCeEEEEcCCc-----c------E-EEecCCCcccC---------ccEEEEEEcCCCCeEEEEecC-CeEEEEEccccce
Q 020107           82 GPFLAQADADG-----G------L-LRDITGEKISS---------SMCLCLEWNPSATSITVGLSD-GSVSIVSVVESQL  139 (331)
Q Consensus        82 ~~~l~~~~~dg-----~------i-iw~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~  139 (331)
                      +++++.|+.+.     .      + +||..+.....         ..+....+.++++.++.|+.+ ..+.+||..+..+
T Consensus        31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w  110 (387)
T d1k3ia3          31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW  110 (387)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE
T ss_pred             CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcc
Confidence            77888777431     1      1 88888765421         123356788899988888764 6899999998877


Q ss_pred             eeeeeeecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEEccCCCceeeeec--c----cCCCc-----ceEEEE
Q 020107          140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWDIRESPFKLAFQN--S----KIHKM-----GVCCIA  202 (331)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~--~----~~~~~-----~v~~~~  202 (331)
                      .....+..... -...+..+ ++.+++.++.+      ..+.+||..+.+-...-..  .    ..+..     .-..+.
T Consensus       111 ~~~~~~~~~r~-~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (387)
T d1k3ia3         111 IPGPDMQVARG-YQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF  188 (387)
T ss_dssp             EECCCCSSCCS-SCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred             ccccccccccc-ccceeeec-CCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEE
Confidence            55444432222 23445554 67888887743      3688999987642111000  0    00000     001122


Q ss_pred             EecCCCCEEEEEecCCeEEEEEecC
Q 020107          203 SIPSDSNTLLTGSYDEYLRVWDVRS  227 (331)
Q Consensus       203 ~~~~~~~~l~~~~~d~~i~iwd~~~  227 (331)
                      ..+ ++..+..++.++.+.++|..+
T Consensus       189 ~~~-~G~~~~~g~~~~~~~~~~~~~  212 (387)
T d1k3ia3         189 GWK-KGSVFQAGPSTAMNWYYTSGS  212 (387)
T ss_dssp             ECG-GGCEEECCSSSEEEEEECSTT
T ss_pred             EeC-CCCEEEecCcCCcEEecCccc
Confidence            223 667777777777777777665

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.77  E-value=0.085  Score=41.81  Aligned_cols=156  Identities=13%  Similarity=-0.008  Sum_probs=85.4

Q ss_pred             CcEEEEEeecccCC-CCCCCCCcEEEEeccCcccce-EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCcc-E-EEecC
Q 020107           24 HHVLAASTYTLQEG-DKPSRNGSISLFNVNAEEKNL-ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGG-L-LRDIT   99 (331)
Q Consensus        24 ~~~la~g~~~~~~~-~~~~~~g~i~vw~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~-i-iw~~~   99 (331)
                      +++++.|++..... .....-..+.+||..++.... ......+.......++.++    +.+++.|+.+.. + +||..
T Consensus        31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~----g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN----GQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT----SCEEEECSSSTTCEEEEEGG
T ss_pred             CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecC----CcEEEeecCCCcceeEecCc
Confidence            47888888543221 000111247789998875321 2222223333456678888    888888876653 3 77766


Q ss_pred             CCccc-------CccEEEEEEcCCCCeEEEEecC------CeEEEEEccccceeeeeeeecc-------cce----eEEE
Q 020107          100 GEKIS-------SSMCLCLEWNPSATSITVGLSD------GSVSIVSVVESQLEVLQQWKAH-------EFE----LWAT  155 (331)
Q Consensus       100 ~~~~~-------~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~-------~~~----v~~~  155 (331)
                      +....       ...-...+..++++.++.|+.+      ..+.+||+.+.++..+......       ...    -...
T Consensus       107 ~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (387)
T d1k3ia3         107 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW  186 (387)
T ss_dssp             GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred             cCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeE
Confidence            54321       1222356667789988888752      3689999998766433221110       000    0011


Q ss_pred             eeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107          156 SFDVHQPHMVYTGSDDCKFSGWDIRESP  183 (331)
Q Consensus       156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~  183 (331)
                      .+...++..++.+...+.+.++|..+..
T Consensus       187 ~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         187 LFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             EEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             EEEeCCCCEEEecCcCCcEEecCcccCc
Confidence            1111245566666666777777776554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.42  E-value=0.07  Score=45.10  Aligned_cols=83  Identities=11%  Similarity=-0.008  Sum_probs=46.8

Q ss_pred             CeEEEEEccCCCceeeeeccc-CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECC
Q 020107          172 CKFSGWDIRESPFKLAFQNSK-IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP  250 (331)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  250 (331)
                      |.|.-+|+.+++.+....... ...+.+     .. .+.++++|+.|+.++-+|.+++ +.+-+........-.-+.|..
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l-----~T-agglVf~G~~dg~l~A~Da~tG-e~lW~~~l~~~~~a~P~ty~~  516 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTL-----YT-KGGLVWYATLDGYLKALDNKDG-KELWNFKMPSGGIGSPMTYSF  516 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCE-----EE-TTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCccee-----Ee-cCCEEEEECCCCeEEEEECCCC-cEEEEEECCCCceecceEEEE
Confidence            456677777776554443311 011111     22 4567888999999999999997 444442222222222356666


Q ss_pred             CCCCeEEEEEe
Q 020107          251 FIPGLVLAACM  261 (331)
Q Consensus       251 ~~~~~~~~~~~  261 (331)
                      ++++++++...
T Consensus       517 dGkqYi~v~~g  527 (571)
T d2ad6a1         517 KGKQYIGSMYG  527 (571)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEec
Confidence            76555545443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.56  E-value=0.32  Score=41.08  Aligned_cols=83  Identities=12%  Similarity=0.041  Sum_probs=48.0

Q ss_pred             CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107          172 CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  251 (331)
                      |.|.-+|+.+++.......    ..++..-.... .+.++++|+.||.++-+|.++++ .+-+...+....-.-+.|..+
T Consensus       466 G~l~AiD~~TG~i~W~~~~----~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe-~LW~~~~~~~~~~~P~ty~~~  539 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKE----HLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGK-ELWKFQTGSGIVSPPITWEQD  539 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEE----SSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCEEEEET
T ss_pred             CeEEEEcCCCCcEEeecCC----CCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCc-EeEEEECCCCccccCEEEEEC
Confidence            5677778887776555543    11121111223 56788889999999999999974 444422222222222566667


Q ss_pred             CCCeEEEEE
Q 020107          252 IPGLVLAAC  260 (331)
Q Consensus       252 ~~~~~~~~~  260 (331)
                      +++++++..
T Consensus       540 G~qYv~i~a  548 (582)
T d1flga_         540 GEQYLGVTV  548 (582)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            655555443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.50  E-value=0.38  Score=37.36  Aligned_cols=106  Identities=10%  Similarity=-0.080  Sum_probs=62.2

Q ss_pred             EEEEE---cCCCeEEEEEccCCCceeeeec--ccCCCcceEEEEEecCCCCEEEEEec---------------CCeEEEE
Q 020107          164 MVYTG---SDDCKFSGWDIRESPFKLAFQN--SKIHKMGVCCIASIPSDSNTLLTGSY---------------DEYLRVW  223 (331)
Q Consensus       164 ~l~~~---~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~---------------d~~i~iw  223 (331)
                      +|++.   ....+|.+|++........+..  ........+.+.+.. ++.+++|-..               -+...+|
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            44444   2456788888875543222211  111234578888888 7778777311               0233444


Q ss_pred             EecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107          224 DVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE  273 (331)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
                      ......  ... ....-...+.|+++|+++.++++....+.+..|++...
T Consensus       192 ~~~~~~--~~~-~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         192 YYSPND--VRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EECSSC--EEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             EEcCCc--eEE-EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            444322  222 23334568899999998666677777788888888654

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=95.50  E-value=0.45  Score=38.14  Aligned_cols=147  Identities=14%  Similarity=0.119  Sum_probs=83.7

Q ss_pred             ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee----cccCCCcceEEEEEecCCCCEEEEEecC----Ce
Q 020107          148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ----NSKIHKMGVCCIASIPSDSNTLLTGSYD----EY  219 (331)
Q Consensus       148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~  219 (331)
                      ..+.|.+|+++|.+++.+++++..|-|..-+ ..++.=..+.    ........+.+|+++|.+++.+..+..+    ..
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~   88 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW   88 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcC
Confidence            4567999999999899998888776553322 2222111110    0011344688999999766777665422    12


Q ss_pred             EEEEEecCCCCCceeeeee--------cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee------cCC
Q 020107          220 LRVWDVRSISKPVNETSVC--------LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA------KHG  285 (331)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~  285 (331)
                      ..+|--..+.+-.......        ....+..+.++|..+..+.++..+++  +|+-.+. ++.-....      ...
T Consensus        89 ~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~g--l~~S~D~-G~tW~~~~~~~~~~~~~  165 (427)
T d2ebsa1          89 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDR-AKTWTNVTSIPDAFTNG  165 (427)
T ss_dssp             CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSC--EEEESST-TSSCEECTTSSCCCCSS
T ss_pred             ccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccc--eeeecCC-CceeeecccCcccccCC
Confidence            3455444433322221111        11235678999987777877776777  6665543 33322221      122


Q ss_pred             cceeeeeecCCCC
Q 020107          286 SLAYGADWQRGRS  298 (331)
Q Consensus       286 ~~v~~~~~~~~~~  298 (331)
                      ..+..+.++|..+
T Consensus       166 ~~~~~i~~~p~~~  178 (427)
T d2ebsa1         166 IGYTSVIFDPERN  178 (427)
T ss_dssp             SCEEEEEECTTST
T ss_pred             ccceEEEeccccc
Confidence            3477888988764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.48  E-value=0.42  Score=37.65  Aligned_cols=174  Identities=9%  Similarity=0.008  Sum_probs=98.4

Q ss_pred             cEeEEEEcCCCCCCCCeEEEEcCCccEEEecCC----------C-c----ccCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107           68 GIFDIKWSPVGGNAGPFLAQADADGGLLRDITG----------E-K----ISSSMCLCLEWNPSATSITVGLSDGSVSIV  132 (331)
Q Consensus        68 ~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~----------~-~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  132 (331)
                      ...-++.++.    ..++++|+.++.++-....          . .    ..-..|..++|+.+  .|++. .++.+..+
T Consensus        38 ~~~LLAVsn~----~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          38 SLQNLDISNS----KSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             CCBCEEEETT----TTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred             ccceEEEeCC----CCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence            3566777877    6688888888776332110          0 0    01235788888644  45554 44667777


Q ss_pred             EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc--cCCCcceEEEEEecCCCCE
Q 020107          133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS--KIHKMGVCCIASIPSDSNT  210 (331)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~  210 (331)
                      +...-..  ......-..++..+.++|   ..++....++.+.++++..++........  ..-...+.+++|++ .+..
T Consensus       111 ~~~~l~~--~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kgkq  184 (381)
T d1xipa_         111 DLEELSE--FRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RSFQ  184 (381)
T ss_dssp             ESSSTTC--EEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-SCEE
T ss_pred             Eeecccc--ccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC-CcEE
Confidence            7765221  222223345678888887   45666777899999999887643322110  00135678888888 7777


Q ss_pred             EEEEecCCeEEE-EEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107          211 LLTGSYDEYLRV-WDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAA  259 (331)
Q Consensus       211 l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  259 (331)
                      ++++..++ ..+ -++... ..+.. .......|.+|.|-.+  ..+++.
T Consensus       185 ~v~~~g~~-~q~k~~i~~~-~~~~~-p~~~~~~v~sI~WL~~--~~F~vv  229 (381)
T d1xipa_         185 SFAWRNGE-MEKQFEFSLP-SELEE-LPVEEYSPLSVTILSP--QDFLAV  229 (381)
T ss_dssp             EEEEETTE-EEEEEEECCC-HHHHT-SCTTTSEEEEEEESSS--SEEEEE
T ss_pred             EEEeCCCc-eeeccCCCCc-cccCC-CcCCCcceeEEEEecC--ceEEEE
Confidence            77764322 222 122211 11110 0123456889999876  444444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.42  E-value=0.63  Score=39.30  Aligned_cols=86  Identities=10%  Similarity=0.062  Sum_probs=48.1

Q ss_pred             CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107          172 CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  251 (331)
                      |.|.-||+.+++.......    ..+..+-.... .+.+++.|+.||.++-+|.+++ +.+-+........-.-+.|..+
T Consensus       453 G~l~A~D~~TG~~~W~~~~----~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TG-e~LW~~~~~~~~~a~P~tY~~d  526 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME----RFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTG-DLLWKFKIPSGAIGYPMTYTHK  526 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE----SSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEET
T ss_pred             ceEEEEeCCCCceecccCC----CCCCccceeEe-cCCEEEEECCCCeEEEEECCCC-cEeeEEECCCCcccCCeEEEEC
Confidence            4677777777765444332    11111111222 4678888999999999999997 4444422222222222455557


Q ss_pred             CCCeEEEEEecC
Q 020107          252 IPGLVLAACMHN  263 (331)
Q Consensus       252 ~~~~~~~~~~~~  263 (331)
                      +++++++....+
T Consensus       527 GkQYvav~~G~g  538 (596)
T d1w6sa_         527 GTQYVAIYYGVG  538 (596)
T ss_dssp             TEEEEEEEECCC
T ss_pred             CEEEEEEEecCC
Confidence            656665555443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.09  E-value=0.54  Score=36.60  Aligned_cols=202  Identities=10%  Similarity=0.123  Sum_probs=109.4

Q ss_pred             eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcC----CCCCCCCeEEEEc
Q 020107           14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSP----VGGNAGPFLAQAD   89 (331)
Q Consensus        14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~l~~~~   89 (331)
                      +|-.+|..|...+++...          +++-|++||++...  +..+   ..+.++.|..-.    .+.  ..-|++++
T Consensus        30 AIW~n~~~p~~SlI~gTd----------K~~Gl~vYdL~G~~--l~~~---~~Gr~NNVDvr~~~~l~~~--~~di~vas   92 (353)
T d1h6la_          30 AIWLDPKNPQNSKLITTN----------KKSGLAVYSLEGKM--LHSY---HTGKLNNVDIRYDFPLNGK--KVDIAAAS   92 (353)
T ss_dssp             EEECCSSCGGGCEEEEEE----------TTSCCEEEETTCCE--EEEC---CSSCEEEEEEEEEEEETTE--EEEEEEEE
T ss_pred             eEEcCCCCcCccEEEEEc----------CcCCEEEEcCCCcE--EEec---ccCCcCccccccccccCCc--ceEEEEEe
Confidence            344567666655555554          56679999997653  4433   224444444321    100  22344444


Q ss_pred             -C-Ccc--E-EEecCCCcc--------------cCccEEEEEE--cCC-CC-eEEEEecCCeEEEEEccc---cc--eee
Q 020107           90 -A-DGG--L-LRDITGEKI--------------SSSMCLCLEW--NPS-AT-SITVGLSDGSVSIVSVVE---SQ--LEV  141 (331)
Q Consensus        90 -~-dg~--i-iw~~~~~~~--------------~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~~--~~~  141 (331)
                       . ++.  + +|.+.....              ....++.+++  ++. +. ++++...+|.+..|.+..   +.  ...
T Consensus        93 nR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~l  172 (353)
T d1h6la_          93 NRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKK  172 (353)
T ss_dssp             ECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEE
T ss_pred             CCcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEe
Confidence             2 233  3 565542111              0123556665  664 44 466677799999988743   21  233


Q ss_pred             eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC--Cceeeeec--ccCCCcceEEEEEecC---CCCEEEEE
Q 020107          142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES--PFKLAFQN--SKIHKMGVCCIASIPS---DSNTLLTG  214 (331)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~--~~~~~~~v~~~~~~~~---~~~~l~~~  214 (331)
                      ++.+. -...+..|.+.+ ....|+.+-.+..+..++....  .....+..  .......+-.|+.-..   ++-+|++.
T Consensus       173 vr~f~-~~~q~EGCVvDd-e~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSs  250 (353)
T d1h6la_         173 VRAFK-MNSQTEGMAADD-EYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASS  250 (353)
T ss_dssp             EEEEE-CSSCEEEEEEET-TTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             eeccC-CCCccceEEEeC-CCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEc
Confidence            45554 345688899986 6677777777776666665422  11222211  1113556777765431   23445555


Q ss_pred             ecCCeEEEEEecCCCCCcee
Q 020107          215 SYDEYLRVWDVRSISKPVNE  234 (331)
Q Consensus       215 ~~d~~i~iwd~~~~~~~~~~  234 (331)
                      -.+++..+||.......+..
T Consensus       251 QG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         251 QGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             GGGTEEEEEESSTTCCEEEE
T ss_pred             CCCCeEEEEecCCCccccce
Confidence            56789999999875444433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.97  E-value=0.058  Score=45.68  Aligned_cols=143  Identities=13%  Similarity=0.074  Sum_probs=70.3

Q ss_pred             EEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc-eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeee
Q 020107          110 CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF-ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAF  188 (331)
Q Consensus       110 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  188 (331)
                      .++++|+...+++...+....+......+............ ......+-. . . -.....-|.|.-||+.+++.+-..
T Consensus       397 ~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-~-p~~~~~~G~l~AiD~~tGk~~W~~  473 (573)
T d1kb0a2         397 PMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN-A-E-PPKSKPFGRLLAWDPVAQKAAWSV  473 (573)
T ss_dssp             CCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC-S-S-CCCSCCEEEEEEEETTTTEEEEEE
T ss_pred             ccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccc-c-C-CCCCCCcccEEEeCCCCCceEeee
Confidence            45788888888887776666655544322100000000000 000000000 0 0 000011257788888888766555


Q ss_pred             ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceE--EEEECCCCCCeEEEEEecC
Q 020107          189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVW--RIKHHPFIPGLVLAACMHN  263 (331)
Q Consensus       189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~  263 (331)
                      .....-.+..  ++  - .+.++++|+.|+.++.+|.++++. +-+  ......+.  -+.|..++++++++....+
T Consensus       474 ~~~~p~~gg~--ls--t-agglVF~G~~dg~l~A~Da~TGe~-LW~--~~~~~~~~~~P~ty~~~GkQYv~v~~G~g  542 (573)
T d1kb0a2         474 EHVSPWNGGT--LT--T-AGNVVFQGTADGRLVAYHAATGEK-LWE--APTGTGVVAAPSTYMVDGRQYVSVAVGWG  542 (573)
T ss_dssp             EESSSCCCCE--EE--E-TTTEEEEECTTSEEEEEETTTCCE-EEE--EECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             cCCCCCCCce--EE--E-cCCEEEEECCCCeEEEEECCCCcE-eEE--EECCCCccccCEEEEECCEEEEEEEeCCC
Confidence            4411111111  22  2 567888899999999999999744 444  22222221  1445556645555544433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.93  E-value=0.12  Score=43.59  Aligned_cols=86  Identities=7%  Similarity=-0.068  Sum_probs=48.4

Q ss_pred             CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107          172 CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF  251 (331)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  251 (331)
                      |.|.-+|+.+++.+..+..    ..+..+-...- .+.++++|+.||.++-+|.++++ .+-+........-.-+.+..+
T Consensus       438 G~l~A~D~~tGk~~W~~~~----~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe-~LW~~~l~~~~~~~P~ty~~d  511 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY----PTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGE-ALWQFEAQSGIVAAPMTFELA  511 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE----SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCEEEEET
T ss_pred             cceEEEeCCCCeEeeeccC----CCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCc-EeEEEECCCCccccCEEEEEC
Confidence            5677788888876555544    11111111222 46788889999999999999974 444422222211122455556


Q ss_pred             CCCeEEEEEecC
Q 020107          252 IPGLVLAACMHN  263 (331)
Q Consensus       252 ~~~~~~~~~~~~  263 (331)
                      +++++++....+
T Consensus       512 Gkqyv~v~aG~g  523 (560)
T d1kv9a2         512 GRQYVAIMAGWG  523 (560)
T ss_dssp             TEEEEEEEECCC
T ss_pred             CEEEEEEEeCCC
Confidence            645555544433

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.63  E-value=0.76  Score=36.13  Aligned_cols=134  Identities=5%  Similarity=-0.007  Sum_probs=74.6

Q ss_pred             CcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee
Q 020107           67 AGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE  140 (331)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  140 (331)
                      ..|..++|+.+      .|+....++....+.....      ....++..+.++|  ..++....+|.+.++++..++..
T Consensus        87 p~v~~vafs~d------~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~  158 (381)
T d1xipa_          87 PDVIFVCFHGD------QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTK  158 (381)
T ss_dssp             TTEEEEEEETT------EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCeEEEEeeCC------EEEEEeCCCEEEEEeeccccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccc
Confidence            46899999866      5666554443333332211      1245677888877  45677778899999999886543


Q ss_pred             eee----eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107          141 VLQ----QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG  214 (331)
Q Consensus       141 ~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  214 (331)
                      .+.    .+. -...+.+++|++ .+..++++..+..-.--++....   .+.........|.+|.|.. +..++++-
T Consensus       159 ~~~~~v~~~~-~~~~~~~v~ws~-kgkq~v~~~g~~~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~-~~~F~vvy  230 (381)
T d1xipa_         159 QLAQNVTSFD-VTNSQLAVLLKD-RSFQSFAWRNGEMEKQFEFSLPS---ELEELPVEEYSPLSVTILS-PQDFLAVF  230 (381)
T ss_dssp             EEEESEEEEE-ECSSEEEEEETT-SCEEEEEEETTEEEEEEEECCCH---HHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred             cccCCcceEE-ecCCceEEEEeC-CcEEEEEeCCCceeeccCCCCcc---ccCCCcCCCcceeEEEEec-CceEEEEE
Confidence            332    111 234577888886 66777766432211111222111   1221112345788899986 44444443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.44  E-value=0.94  Score=37.85  Aligned_cols=83  Identities=6%  Similarity=0.059  Sum_probs=49.9

Q ss_pred             CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107          126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP  205 (331)
Q Consensus       126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  205 (331)
                      .|.|.-+|+.+++..-...+..   +...-... ..+.++++|+.||.++-+|.++++.+..+....+.....  +.+..
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~---~~~gg~l~-TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~ty~~  510 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPT---HWNGGTLS-TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP--MTFEL  510 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS---SCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEE
T ss_pred             ccceEEEeCCCCeEeeeccCCC---CCCCceeE-ECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC--EEEEE
Confidence            3678888998886522222221   11111122 245788889999999999999999888887733233322  34444


Q ss_pred             CCC-CEEEEEe
Q 020107          206 SDS-NTLLTGS  215 (331)
Q Consensus       206 ~~~-~~l~~~~  215 (331)
                       ++ ++|++..
T Consensus       511 -dGkqyv~v~a  520 (560)
T d1kv9a2         511 -AGRQYVAIMA  520 (560)
T ss_dssp             -TTEEEEEEEE
T ss_pred             -CCEEEEEEEe
Confidence             55 4555433

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=94.06  E-value=1  Score=35.97  Aligned_cols=155  Identities=13%  Similarity=0.122  Sum_probs=78.8

Q ss_pred             CccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeee----ecccceeEEEeeCCCCCcEEEEEcCC----CeEE
Q 020107          105 SSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQW----KAHEFELWATSFDVHQPHMVYTGSDD----CKFS  175 (331)
Q Consensus       105 ~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~  175 (331)
                      ...+.+|+++|.. +.++++...|-|..-+-....++++...    ......+.+|+++|.+++.+..+..+    ....
T Consensus        11 gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~~g   90 (427)
T d2ebsa1          11 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   90 (427)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcCcc
Confidence            4567788888854 4465666655553322111223222111    11233578999999777777665422    1223


Q ss_pred             EEEccC-CCceeeeecc------cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee-----eeecCCce
Q 020107          176 GWDIRE-SPFKLAFQNS------KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET-----SVCLGGGV  243 (331)
Q Consensus       176 i~d~~~-~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~v  243 (331)
                      ||-... ++.-..+...      ......+..+.++|.+.+.+..++.++-|  |--....+.....     .......+
T Consensus        91 i~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl--~~S~D~G~tW~~~~~~~~~~~~~~~~  168 (427)
T d2ebsa1          91 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGIGY  168 (427)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCE--EEESSTTSSCEECTTSSCCCCSSSCE
T ss_pred             EEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccce--eeecCCCceeeecccCcccccCCccc
Confidence            453332 2211111110      00123456788999777888777766544  3333322222210     01223347


Q ss_pred             EEEEECCCCCCeEEEEEe
Q 020107          244 WRIKHHPFIPGLVLAACM  261 (331)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~  261 (331)
                      ..+.++|..+..+.+++.
T Consensus       169 ~~i~~~p~~~~~~y~~~~  186 (427)
T d2ebsa1         169 TSVIFDPERNGTIYASAT  186 (427)
T ss_dssp             EEEEECTTSTTCEEEEES
T ss_pred             eEEEecccccceeeeeee
Confidence            889999987676665543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.96  E-value=1  Score=34.97  Aligned_cols=197  Identities=8%  Similarity=0.049  Sum_probs=104.7

Q ss_pred             CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC-----CCCcEEEEEc-CC---CeEEEEEccCCC-ce
Q 020107          116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV-----HQPHMVYTGS-DD---CKFSGWDIRESP-FK  185 (331)
Q Consensus       116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~-~d---g~i~i~d~~~~~-~~  185 (331)
                      +..+++.....+-|.+||+. ++.  +..+.  .+.+..+..-.     ....-++.++ ++   ..|.+|.+.... ..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~--l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l  113 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKM--LHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCE--EEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcE--EEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence            34455555666679999996 432  33332  23344443221     1222244444 32   367788876332 12


Q ss_pred             eeeeccc----CCCcceEEEEE--ecCCCC-EEEEEecCCeEEEEEecCCCCC-ce---eeeeecCCceEEEEECCCCCC
Q 020107          186 LAFQNSK----IHKMGVCCIAS--IPSDSN-TLLTGSYDEYLRVWDVRSISKP-VN---ETSVCLGGGVWRIKHHPFIPG  254 (331)
Q Consensus       186 ~~~~~~~----~~~~~v~~~~~--~~~~~~-~l~~~~~d~~i~iwd~~~~~~~-~~---~~~~~~~~~v~~~~~~~~~~~  254 (331)
                      ..+....    .-...++.+++  +|.++. ++++...+|.+..|.+...+.. +.   .........+..+.+.+.. +
T Consensus       114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~-~  192 (353)
T d1h6la_         114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEY-G  192 (353)
T ss_dssp             EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTT-T
T ss_pred             ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCC-C
Confidence            2222100    01223566666  664454 5666778899999887542211 11   1124556778889999876 6


Q ss_pred             eEEEEEecCcEEEEEEcCc--c---cceeEEeec--CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107          255 LVLAACMHNGFAVVKVGGE--K---AEVLETYAK--HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES  326 (331)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~  326 (331)
                      .|+++-.+.+  +|.+.-.  .   ...+....+  ...-+.+++.-....     ..+-+|+|.- .+.+..+||...
T Consensus       193 ~LyisEE~~G--iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~-----~~GylivSsQ-G~n~f~vydr~~  263 (353)
T d1h6la_         193 SLYIAEEDEA--IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAAD-----GKGYLLASSQ-GNSSYAIYERQG  263 (353)
T ss_dssp             EEEEEETTTE--EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGG-----GCEEEEEEEG-GGTEEEEEESST
T ss_pred             cEEEecCccc--eEEEEeccCCCccceeeecccCccccCCccccEEEEcCC-----CCeEEEEEcC-CCCeEEEEecCC
Confidence            7777766666  5665432  1   222322222  345677777654321     1224555555 789999999865

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.71  E-value=1  Score=33.99  Aligned_cols=193  Identities=7%  Similarity=0.069  Sum_probs=108.5

Q ss_pred             eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec----CcEeEEEEcCCCCC
Q 020107            5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT----AGIFDIKWSPVGGN   80 (331)
Q Consensus         5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~   80 (331)
                      ++.+..++.--+|...    +.|+.-+           +..|+=|+++....+.+.+ ..|.    ..|..-+-+++   
T Consensus        98 s~~~~e~VvfWkWis~----~~L~lVT-----------~taVYHW~~~g~s~P~k~f-dR~~~L~~~QIInY~~d~~---  158 (327)
T d1utca2          98 AHTMTDDVTFWKWISL----NTVALVT-----------DNAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAK---  158 (327)
T ss_dssp             EEECSSCCCEEEESSS----SEEEEEC-----------SSEEEEEESSSSCCCEEEE-ECCGGGTTCEEEEEEECTT---
T ss_pred             eEEcCCCcEEEEecCC----CEEEEEc-----------CCceEEEcccCCCCchhhh-hhcccccCceEEEEEECCC---
Confidence            3445555555555544    5677776           7799999997765454444 4453    35777788888   


Q ss_pred             CCCeEEEE---cCCccE-----EEecCCCccc--CccE-EEEEEcCCC-----CeEEEE---ecCCeEEEEEccccce--
Q 020107           81 AGPFLAQA---DADGGL-----LRDITGEKIS--SSMC-LCLEWNPSA-----TSITVG---LSDGSVSIVSVVESQL--  139 (331)
Q Consensus        81 ~~~~l~~~---~~dg~i-----iw~~~~~~~~--~~~v-~~~~~~~~~-----~~l~~~---~~dg~i~i~d~~~~~~--  139 (331)
                       .++++..   ..++.+     ++..+.....  .+.+ .-..+..+|     +.++.+   ...+.+.+.++.....  
T Consensus       159 -~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~  237 (327)
T d1utca2         159 -QKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN  237 (327)
T ss_dssp             -SCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTC
T ss_pred             -CCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCC
Confidence             7776643   344445     7777765321  1111 111111111     122222   2246888888865210  


Q ss_pred             ee--eee--e--ec--ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107          140 EV--LQQ--W--KA--HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL  211 (331)
Q Consensus       140 ~~--~~~--~--~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  211 (331)
                      .+  .+.  +  ..  ..+-.-++..++ .-..+..-+.-|.|++||+.++.++..-+.   ....|...+-.. +..=+
T Consensus       238 ~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRI---s~~~iF~~a~~~-~~~Gi  312 (327)
T d1utca2         238 QPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHE-ATAGI  312 (327)
T ss_dssp             CCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEET-TTTEE
T ss_pred             CCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeec---CCCceEEeccCC-CCceE
Confidence            11  111  1  11  112233667775 667888889999999999999988766665   566666555444 33344


Q ss_pred             EEEecCCeEEE
Q 020107          212 LTGSYDEYLRV  222 (331)
Q Consensus       212 ~~~~~d~~i~i  222 (331)
                      +.-..+|.|..
T Consensus       313 ~~VNr~GqVl~  323 (327)
T d1utca2         313 IGVNRKGQVLS  323 (327)
T ss_dssp             EEEETTSEEEE
T ss_pred             EEECCCCeEEE
Confidence            44446666543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.62  E-value=2.4  Score=35.36  Aligned_cols=56  Identities=13%  Similarity=0.073  Sum_probs=34.3

Q ss_pred             CeEEEEEccCCCceeeeecccCCC-------cceEEEEEecCCC---CEEEEEecCCeEEEEEecCCC
Q 020107          172 CKFSGWDIRESPFKLAFQNSKIHK-------MGVCCIASIPSDS---NTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      ..+.-.|+++++....++... |.       .......... ++   ..++..+.+|.+.++|..+++
T Consensus       272 ~svvAld~~TG~~~W~~q~~~-~D~Wd~D~~~~~~l~~~~~-~g~~~~~v~~~~k~G~l~vlDr~tG~  337 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTP-HDEWDFAGVNQMVLTDQPV-NGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESST-TCSSCCCCCCCCEEEEEEE-TTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             cceeeeeccchhheecccccC-ccccccccccccceeeeec-cCccccceeeccccceEEEEecCCCc
Confidence            467778999998776666411 21       1111222222 33   256778899999999988763

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.62  E-value=4.1  Score=34.08  Aligned_cols=57  Identities=14%  Similarity=0.099  Sum_probs=35.2

Q ss_pred             CeEEEEEccCCCceeeeecccCCCc-------ceEEEEEecCCC---CEEEEEecCCeEEEEEecCCC
Q 020107          172 CKFSGWDIRESPFKLAFQNSKIHKM-------GVCCIASIPSDS---NTLLTGSYDEYLRVWDVRSIS  229 (331)
Q Consensus       172 g~i~i~d~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~  229 (331)
                      ..|.-.|+++++....++.. .|..       .+.-+..-..++   ..++....+|.+.++|..+++
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~-~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~  344 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKT-PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA  344 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESS-TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccccccccccccccce-eccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence            45778899999877766652 1321       122222211122   467788899999999988863

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.18  E-value=4.4  Score=33.75  Aligned_cols=82  Identities=23%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107          126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP  205 (331)
Q Consensus       126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  205 (331)
                      .|.|.-+|+.+++.  +-....+ .++..-..+. .+.++++|+.||.++-+|.++++.+..+....+.....  +.|..
T Consensus       465 ~G~l~AiD~~TG~i--~W~~~~~-~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~  538 (582)
T d1flga_         465 VGSLRAMDPVSGKV--VWEHKEH-LPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQ  538 (582)
T ss_dssp             SEEEEEECTTTCCE--EEEEEES-SCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEE
T ss_pred             CCeEEEEcCCCCcE--EeecCCC-CCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEE
Confidence            46788888888764  2222211 1222212222 45788889999999999999999988887632222222  45555


Q ss_pred             CCC-CEEEEE
Q 020107          206 SDS-NTLLTG  214 (331)
Q Consensus       206 ~~~-~~l~~~  214 (331)
                       ++ +++++.
T Consensus       539 -~G~qYv~i~  547 (582)
T d1flga_         539 -DGEQYLGVT  547 (582)
T ss_dssp             -TTEEEEEEE
T ss_pred             -CCEEEEEEE
Confidence             55 455443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.46  E-value=4.3  Score=32.56  Aligned_cols=55  Identities=15%  Similarity=0.154  Sum_probs=37.0

Q ss_pred             ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee------cccceeEEEeeCCC
Q 020107          106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK------AHEFELWATSFDVH  160 (331)
Q Consensus       106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~~v~~~~~~~~  160 (331)
                      ...++|+|.|+++.+++--..|.|++++..+++...+..+.      ..+.....++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34568889998887766545788888887776544444331      12356778999983

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.52  E-value=4.8  Score=31.92  Aligned_cols=245  Identities=9%  Similarity=0.017  Sum_probs=122.2

Q ss_pred             EeEEEEcCCCCCCCCeEEEE-cCCccE-----EEecCCCcccCccE-----EEEEEcCCCCeEEEEecC-----------
Q 020107           69 IFDIKWSPVGGNAGPFLAQA-DADGGL-----LRDITGEKISSSMC-----LCLEWNPSATSITVGLSD-----------  126 (331)
Q Consensus        69 v~~~~~~~~~~~~~~~l~~~-~~dg~i-----iw~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d-----------  126 (331)
                      +..++++|+    +++++.+ +..|.-     +.|+.+++.....+     ..+.|.++++.|+-...+           
T Consensus       127 ~~~~~~Spd----~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         127 LRGYAFSED----GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEECTT----SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             ecceEecCC----CCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCccccccc
Confidence            556778999    7777643 334432     88999887643332     467899999987654322           


Q ss_pred             -----CeEEEEEccccceeeeeeeeccc--ceeEEEeeCCCCCcEEEE-Ec--CCCe--EEEEEccCCCcee-----eee
Q 020107          127 -----GSVSIVSVVESQLEVLQQWKAHE--FELWATSFDVHQPHMVYT-GS--DDCK--FSGWDIRESPFKL-----AFQ  189 (331)
Q Consensus       127 -----g~i~i~d~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~-~~--~dg~--i~i~d~~~~~~~~-----~~~  189 (331)
                           ..|..+.+.+........+....  ..+..+..++ ++.+++. ..  .+..  +.+.|+.......     ...
T Consensus       203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             ccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                 25777887775443344444333  2355666776 5565543 22  2333  4445554432110     001


Q ss_pred             cccCCCcceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCCC-ceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107          190 NSKIHKMGVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISKP-VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF  265 (331)
Q Consensus       190 ~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  265 (331)
                      ..........-+.. . ++.+++...   .++.|...++...... ...+...+...+..-.+...+ +.++..-.+++.
T Consensus       282 ~~~~~~~~~~~~~~-~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~-~~lvl~~~~~~~  358 (430)
T d1qfma1         282 LIDNFEGEYDYVTN-E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS-NFLVLCYLHDVK  358 (430)
T ss_dssp             EECSSSSCEEEEEE-E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETT-TEEEEEEEETTE
T ss_pred             eecccccceEEEec-C-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEEC-CEEEEEEEcCCE
Confidence            10112223333332 2 333333332   3467777777664322 223223344445433333322 455555555554


Q ss_pred             EEEEEcC-cccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCccc
Q 020107          266 AVVKVGG-EKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDCL  329 (331)
Q Consensus       266 ~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~~  329 (331)
                      .-+.+.+ ..+..........+.|..+...++..        .+.++.++  .-.++.-+|+.++.+
T Consensus       359 ~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~--------~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         359 NTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT--------EIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS--------EEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             eEEEEEECCCCcEEEecCCCCceEeeccCCCCCC--------EEEEEEcCCCCCCeEEEEECCCCCc
Confidence            3333322 22333333333445566665555543        44444431  337899999988754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=88.21  E-value=4.7  Score=33.50  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCeEEEEEccCCCceee
Q 020107          163 HMVYTGSDDCKFSGWDIRESPFKLA  187 (331)
Q Consensus       163 ~~l~~~~~dg~i~i~d~~~~~~~~~  187 (331)
                      ..++.++.+|.+.++|..+++.+..
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~  352 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISA  352 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             eeeeeccccceeEEecccccccccc
Confidence            4677888999999999999886543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.26  E-value=6.6  Score=28.61  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=15.0

Q ss_pred             cEEEEeecCCC-----eEEEEcCCCcc
Q 020107          307 SLVATCSFYDR-----LLRIWMPESDC  328 (331)
Q Consensus       307 ~~l~s~~~~d~-----~i~iW~~~~~~  328 (331)
                      ++++.|| .++     .|.+||++++.
T Consensus       244 ~l~v~GG-~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         244 RIYVLGG-YDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEEEECC-BCSSCBCCEEEEEETTTTE
T ss_pred             EEEEEec-CCCCeecceEEEEECCCCE
Confidence            6888877 444     37889988764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.57  E-value=10  Score=30.25  Aligned_cols=55  Identities=16%  Similarity=0.065  Sum_probs=38.9

Q ss_pred             ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc-----cCCCcceEEEEEec
Q 020107          150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS-----KIHKMGVCCIASIP  205 (331)
Q Consensus       150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~~~~  205 (331)
                      ...++++|.| +++++++--..|.|++++..++.........     ..-+.....|+++|
T Consensus        27 ~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             CCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            4567999998 7788877656799999998877643332221     11246788999998