Citrus Sinensis ID: 020162

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MSKYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPEKERLSAYSNSASESSRGKEGHQAETSTSSRSIESSESNPASDRPVSDSSEQEKPSVEKPSDGQPKPDHHKRGQDALAAAKERFMARKKAKEQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccHHHHHcccccHHHHHHHHHHcccHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccHHHHHHHcccccHHcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mskyglqlrvnpsqqkkqptnkpplpppkafgldddgggdddvegEISRQAIKNRALKEIEEQQRKALaedpnvfdydgcydemkQKSVRRKVqdradtqpkYIHKLIHKADERKREHDIIYERkltkerskedhlfadkekFVTGAYKKKLEEQQRWAREQALRDLRDerddvtkktdvsdFYFNLHknvafgggnkdsmnldkkaevtkpekevdKKAEQRRPEKEEIQRAADTPEKERLSaysnsasessrgkeghqaetstssrsiessesnpasdrpvsdsseqekpsvekpsdgqpkpdhhkRGQDALAAAKERFMARKKAKEQ
Flexible Loop (DISEMBL)
mskyglqlrvnpsqqkkqptnkpplppPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIEEQQrkalaedpnvfdyDGCYDEMKqksvrrkvqdradtqpkyihklihkaderkrehdiiyerkltkerskedhlfadkekfvtGAYKKKLEEQQRWAREQAlrdlrderddvtkktdvsdfyfnlhknvafgggnkdsmnldkkaevtkpekevdkkaeqrrpekeeiqraadtpekerlsaysnsasessrgkeghqaetstssrsiessesnpasdrpvsdsseqekpsvekpsdgqpkpdhHKRGQDALAAAKERFMARKKAKEQ
Low Complexity Region (SEG)
MSKYGLQLRVNpsqqkkqptnkpplpppkAFGLdddgggdddVEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPEKERLsaysnsasessRGKEGHQAetstssrsiessesNPASDRPVSDSSEQEKPSVEKPSDGQPKPDHHKRGQDALAAAKERFMARKKAKEQ
Disordered region (IsUnstruct)
*************************************************************************VFDYDGCY*********************YIHKLIH**********IIY*******************KFVTGAY******************************DVSDFYFNLHKNVAFG****************************************************************************************************************************************
Disordered Region (DISOPRED)
*SKYGLQ*****************************************************************NVFDYDGC**************************LIHK******************************EKFVTGA**********************************DFYFN************************************************************************************************************************************************
Disordered Region (DISEMBL)
MSKYGLQLRV*************PLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQ***********DTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKA**********************************************************************************************************LAAAKE***********
Disordered Region (DISPRO)
**K*****RV*******************************D**G*I*******RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAF*****************************************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPEKERLSAYSNSASESSRGKEGHQAETSTSSRSIESSESNPASDRPVSDSSEQEKPSVEKPSDGQPKPDHHKRGQDALAAAKERFMARKKAKEQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q9H0G5	558	Nuclear speckle splicing	yes	no	0.560	0.331	0.391	4e-22
Q2KIC0	559	Nuclear speckle splicing	yes	no	0.560	0.330	0.389	4e-20
Q4FZU3	547	Nuclear speckle splicing	yes	no	0.551	0.332	0.403	7e-20
Q5NCR9	542	Nuclear speckle splicing	yes	no	0.854	0.520	0.310	2e-19
Q568R1	516	Nuclear speckle splicing	yes	no	0.818	0.523	0.312	6e-19
A8XXB0	393	Nuclear speckle splicing	N/A	no	0.475	0.399	0.354	2e-12
Q09252	392	Nuclear speckle splicing	yes	no	0.342	0.288	0.391	3e-10
O14009	355	Nuclear speckle splicing	yes	no	0.333	0.309	0.311	0.0008

>sp|Q9H0G5|NSRP1_HUMAN Nuclear speckle splicing regulatory protein 1 OS=Homo sapiens GN=NSRP1 PE=1 SV=1

 Score =  105 bits (263), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 106/194 (54%), Gaps = 9/194 (4%)

Query: 3   KYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIEE 62
           +YGL L   P   KK     P L  P  FG D D   +  V   + R+A K +A+K+ + 
Sbjct: 7   QYGLIL---P---KKTQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKL 60

Query: 63  QQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDI 120
           + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E + 
Sbjct: 61  EIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEK 120

Query: 121 IYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDV 180
             E+K+ +ER  E   F DKE FVT AYKKKL+E+      +      +   DVTK+ D+
Sbjct: 121 RMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDL 180

Query: 181 SDFYFNLHKNVAFG 194
           S FY +L  N A G
Sbjct: 181 SGFYRHL-LNQAVG 193

RNA-binding protein that mediates pre-mRNA alternative splicing regulation.
Homo sapiens (taxid: 9606)

>sp|Q2KIC0|NSRP1_BOVIN Nuclear speckle splicing regulatory protein 1 OS=Bos taurus GN=NSRP1 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 106/195 (54%), Gaps = 10/195 (5%)

Query: 3   KYGLQLRVNPSQQKKQPTNKPPLPPPKAFG-LDDDGGGDDDVEGEISRQAIKNRALKEIE 61
           +YGL L       KK     P L  P  FG   DD   +  V   + R+A K +A+K+ +
Sbjct: 7   QYGLIL------PKKAQQLHPVLQKPSVFGNDSDDDDDETSVSESLQREAAKKQAMKQTK 60

Query: 62  EQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHD 119
            + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +
Sbjct: 61  LEIQKALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRKPKYIHNLLKAVEIRKKEQE 120

Query: 120 IIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTD 179
              E+K+ +ER  E   F DKE FVT AYKKKL+E+      +      + R DVTK+ D
Sbjct: 121 KRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEERERRAAALEARLDVTKQRD 180

Query: 180 VSDFYFNLHKNVAFG 194
           +S FY +L  N A G
Sbjct: 181 LSGFYRHL-LNQAVG 194

RNA-binding protein that mediates pre-mRNA alternative splicing regulation.

Bos taurus (taxid: 9913)

>sp|Q4FZU3|NSRP1_RAT Nuclear speckle splicing regulatory protein 1 OS=Rattus norvegicus GN=Nsrp1 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 111/196 (56%), Gaps = 14/196 (7%)

Query: 3   KYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDD--VEGEISRQAIKNRALKEI 60
           +YGL L      +K QP N+  L  P  FG D D   DD+  V   + R+A K +A+++ 
Sbjct: 7   QYGLIL-----PKKTQPLNRV-LQKPSVFGNDSD---DDEASVSESLQREAAKKQAMRQT 57

Query: 61  EEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREH 118
           + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E 
Sbjct: 58  KLEIQKALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRKPKYIHNLLKAVEIRKKEQ 117

Query: 119 DIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKT 178
           +   E+K+ +ER  E   F DKE FVT AYKKKLEE+      +      + R DVTK+ 
Sbjct: 118 EKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEARLDVTKQK 177

Query: 179 DVSDFYFNLHKNVAFG 194
           D+S FY +L  N A G
Sbjct: 178 DLSGFYRHL-LNQAVG 192

RNA-binding protein that mediates pre-mRNA alternative splicing regulation.

Rattus norvegicus (taxid: 10116)

>sp|Q5NCR9|NSRP1_MOUSE Nuclear speckle splicing regulatory protein 1 OS=Mus musculus GN=Nsrp1 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 157/335 (46%), Gaps = 53/335 (15%)

Query: 3   KYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDD--VEGEISRQAIKNRALKEI 60
           +YGL L      +K QP ++  L  P  FG D D   DD+  V   + R+A K +A+K+ 
Sbjct: 7   QYGLIL-----PKKTQPLHRV-LQKPSVFGSDSD---DDETSVSESLQREAAKKQAMKQT 57

Query: 61  EEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREH 118
           + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E 
Sbjct: 58  KLEIQKALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQ 117

Query: 119 DIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKT 178
           +   E+K+ +ER  E+  F DKE FVT AYKKKLEE+      +      +   DVTK+ 
Sbjct: 118 EKRMEKKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEAHLDVTKQK 177

Query: 179 DVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPE 238
           D+S FY +L  N A G             E   P              K   + A    +
Sbjct: 178 DLSGFYRHL-LNQAVG-------------EEAAP--------------KSSFREARTVIK 209

Query: 239 KERLSAYSNSASESSRGKEGHQAETSTSSRSIESSESNPASDRPVSDSSEQE-------- 290
           +E+L  Y +  +  SR  +    ++    R  + +E NP +DR   D S ++        
Sbjct: 210 EEKLRGYPDETNSESRPPQ----QSCVLQRGAQEAEENPDADREFDDESSEDGEKRDHKV 265

Query: 291 KPSVEKPSDGQPKPDHHKRGQDALAAAKERFMARK 325
           K   E        P HHK    + ++++ER +  K
Sbjct: 266 KSRGEDTGASMKHPKHHKNRAHSRSSSEERGLGTK 300

RNA-binding protein that mediates pre-mRNA alternative splicing regulation.

Mus musculus (taxid: 10090)

>sp|Q568R1|NSRP1_DANRE Nuclear speckle splicing regulatory protein 1 OS=Danio rerio GN=nsrp1 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 149/301 (49%), Gaps = 31/301 (10%)

Query: 4   YGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIEEQ 63
           YGL L   P   +K+ +   PL  P  FG  DD   +  V   + ++AIK + +K+   +
Sbjct: 8   YGLIL---P---QKRASKSAPLARPSVFG--DDSDDETSVGESLQKEAIKKKMMKQTRLE 59

Query: 64  QRKALAEDPNVFDYDGCYDEMKQKSV--RRKVQDRADTQPKYIHKLIHKADERKREHDII 121
            +KAL ED  V++YD  YD+++++ +   +K+    D +PKYI++L+   +ERK+E +  
Sbjct: 60  MQKALEEDSTVYEYDNVYDDIQKQRLESNKKLLGGEDKKPKYINQLLRAVEERKKEQERR 119

Query: 122 YERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQ----RWAREQALRDLRDERDDVTKK 177
            ERK+ KER  E   FADKE FVT AY++KL+E+Q    R  RE  L    D    V K+
Sbjct: 120 DERKIQKEREAEGEKFADKEAFVTSAYRQKLKERQEELEREKREAELEAALD----VKKQ 175

Query: 178 TDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTP 237
            D+S FY +   N   G    + +  D+ A+    EK     A +R P  E       T 
Sbjct: 176 KDLSGFYRHFL-NQTVG----EEVVPDRSAQSE--EKATSSAAAERSPSPE------STA 222

Query: 238 EKERLSAYSNSASESSRGKEGHQAETSTSSRSIESSESNPASDRPVSDSSEQEKPSVEKP 297
            +    A S+S  +    K      T+ +    +  + +P SD    D  E+E+  +++ 
Sbjct: 223 NRRESEAESHSDDDQVDVKPAFSKTTANNHAKRQYRQKSPLSDSDDGDERERERKEIKEK 282

Query: 298 S 298
           S
Sbjct: 283 S 283

Danio rerio (taxid: 7955)

>sp|A8XXB0|NSRP1_CAEBR Nuclear speckle splicing regulatory protein 1 homolog OS=Caenorhabditis briggsae GN=ccdc-55 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 87/172 (50%), Gaps = 15/172 (8%)

Query: 3   KYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIEE 62
           ++GL ++     QK++P  + P+     FG DDD           S   I  R  K  E 
Sbjct: 7   RFGLIVK-----QKEEP-KRAPVRVSSVFGDDDDDEAPATATNTSSASVI--RIQKAAER 58

Query: 63  QQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRA---DTQPKYIHKLIHKADERKREHD 119
           + +KA AEDP +FDYDG YDE++     +K + R    + + KY   +I     R+ E  
Sbjct: 59  EHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNKESKYAEAIIKAHARRQLEQF 118

Query: 120 IIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRW----AREQALRDL 167
              ER+  KER KE   F DKE FVTGAY+K+ EE +++    A E A  D+
Sbjct: 119 SREERQQIKEREKEAGEFDDKEVFVTGAYRKQQEEVKKYREQEAEEAAFNDM 170

Caenorhabditis briggsae (taxid: 6238)

>sp|Q09252|NSRP1_CAEEL Nuclear speckle splicing regulatory protein 1 homolog OS=Caenorhabditis elegans GN=ccdc-55 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 7/120 (5%)

Query: 55  RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRA---DTQPKYIHKLIHKA 111
           R  K  E + +KA AEDP +FDYDG YDE++     +K + R    + + KY   +I   
Sbjct: 51  RVQKAAEREHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNRESKYAENIIKAH 110

Query: 112 DERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEE----QQRWAREQALRDL 167
             R+ E     ER+  +ER KE   F DKE FVTGAY+K+ EE    +++ A E A  D+
Sbjct: 111 ARRQLEQFSREERQQLREREKEGDEFDDKEVFVTGAYRKQQEEVKKHREQEAEEAAFNDM 170

Caenorhabditis elegans (taxid: 6239)

>sp|O14009|NSRP1_SCHPO Nuclear speckle splicing regulatory protein 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29A4.06c PE=3 SV=1

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 12/122 (9%)

Query: 71  DPNVFDYDGCYDEMK---QKSVRRKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLT 127
           D +++ +D  YD MK   ++ +  K  +  D +PKY+  LI  A +RKR+          
Sbjct: 63  DASIYGFDEFYDSMKSAEREQMELKRLESKDRRPKYMENLIESAKKRKRDL----LLARE 118

Query: 128 KERSKEDHLFAD--KEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYF 185
           +   K++ L  D   EKFVT +YKK  EE Q+   +   R   DE+      T + DFY 
Sbjct: 119 RALLKKNELEGDDATEKFVTSSYKKHREEVQKAIED---RKEEDEKSITDTTTGMKDFYA 175

Query: 186 NL 187
           ++
Sbjct: 176 SM 177


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.306    0.125    0.343 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,597,911
Number of Sequences: 539616
Number of extensions: 5952718
Number of successful extensions: 33914
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 1729
Number of HSP's that attempted gapping in prelim test: 26682
Number of HSP's gapped (non-prelim): 6085
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
255565757	327	Coiled-coil domain-containing protein, p	0.930	0.938	0.552	4e-83
225464834	300	PREDICTED: nuclear speckle splicing regu	0.896	0.986	0.538	9e-75
449470301	322	PREDICTED: nuclear speckle splicing regu	0.948	0.972	0.531	7e-73
224102845	321	predicted protein [Populus trichocarpa]	0.830	0.853	0.556	3e-71
357494919	313	Coiled-coil domain-containing protein [M	0.945	0.996	0.492	1e-70
358249028	316	uncharacterized protein LOC100776722 [Gl	0.918	0.958	0.513	4e-70
388502158	313	unknown [Medicago truncatula]	0.945	0.996	0.480	2e-69
356536461	316	PREDICTED: nuclear speckle splicing regu	0.924	0.965	0.504	1e-67
297826035	325	hypothetical protein ARALYDRAFT_481627 [	0.936	0.950	0.498	5e-66
18401381	323	Coiled-coil domain-containing protein 55	0.942	0.962	0.512	5e-65

>gi|255565757|ref|XP_002523868.1| Coiled-coil domain-containing protein, putative [Ricinus communis] gi|223536956|gb|EEF38594.1| Coiled-coil domain-containing protein, putative [Ricinus communis]

 Score =  314 bits (804), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 184/333 (55%), Positives = 228/333 (68%), Gaps = 26/333 (7%)

Query: 3   KYGLQLRVNPSQQKKQPTNKPPLPP-PKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIE 61
           KYGLQLRV P QQ K    KPPLP  P  FG D+D   DD+VE EISR A KN++LK+IE
Sbjct: 15  KYGLQLRVKPQQQAK----KPPLPTKPLLFGQDED---DDNVEKEISRHASKNKSLKDIE 67

Query: 62  EQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDII 121
           E  +KAL EDP+ FDYDG YD+MKQK  + + QDR + +PKYI  L+ KA+ R+REH+II
Sbjct: 68  EMHKKALEEDPSAFDYDGVYDDMKQKVAQPRHQDRQERKPKYIEALMKKAEIRQREHEII 127

Query: 122 YERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVS 181
           YE+KLTKER+K+DHL+ADK+KFVT AYKKKL EQ +W  E+ LR L++E+DDVTKK+D+S
Sbjct: 128 YEKKLTKERTKDDHLYADKDKFVTSAYKKKLAEQAKWMEEERLRQLKEEKDDVTKKSDLS 187

Query: 182 DFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPEKER 241
           DFYFNL KNVAFG    DS   +K+ E+ K EK +D +A            A  T  + R
Sbjct: 188 DFYFNLGKNVAFGAKEIDSRKQEKQTELRKSEK-LDDEA------------AGSTSGRGR 234

Query: 242 LSAYSNSASESSRGKEGHQAETS----TSSRSIESSESNPASDRPVSDSSEQEKPSVEKP 297
               S S  ESSR  E H   TS       R+ ESS+ NP S+R V D+S QE  + E+P
Sbjct: 235 PLPDSKSIMESSRVNEEHHDGTSPVPILPRRNSESSDVNPVSERKV-DTSVQENTATEEP 293

Query: 298 SDGQPKPDHHKRGQDALAAAKERFMARKKAKEQ 330
              QPK DHHKR +D +AAAKERF+ARKKAK+Q
Sbjct: 294 LANQPKQDHHKRNEDTVAAAKERFLARKKAKQQ 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464834|ref|XP_002271014.1| PREDICTED: nuclear speckle splicing regulatory protein 1 [Vitis vinifera] gi|147866225|emb|CAN79937.1| hypothetical protein VITISV_027776 [Vitis vinifera]

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 180/334 (53%), Positives = 229/334 (68%), Gaps = 38/334 (11%)

Query: 1   MSKYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEI 60
           M KYGLQLRV PSQQKKQPT  P    P   G  D+   +DD+E EISRQA KN+ LK+I
Sbjct: 1   MKKYGLQLRVPPSQQKKQPTRPPL---PPPLGFCDEN--EDDIEREISRQASKNKTLKDI 55

Query: 61  EEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDI 120
           EEQ +KAL EDP  FDYD  Y+EMK+K++R   QDR + +PKYI KLI KA +R+REH+I
Sbjct: 56  EEQHKKALEEDPTAFDYDDVYEEMKEKTIRPLAQDRQERKPKYIQKLIEKAKQREREHEI 115

Query: 121 IYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDV 180
           IYE+KL KERSK+D L+ADK+KF+TGAYKKKL EQ +W  E+ LR+LR+E+DDVTKK+D+
Sbjct: 116 IYEKKLVKERSKDDALYADKDKFITGAYKKKLAEQAKWLEEERLRELREEKDDVTKKSDL 175

Query: 181 SDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPEKE 240
           SDFY+NL KNVAFGG          +A++ K E++VD                ADT EK 
Sbjct: 176 SDFYYNLSKNVAFGGI---------EAKLRKREEKVD----------------ADTSEKG 210

Query: 241 RLSAYSNSASESS----RGKEGHQAETSTSSRSIESSESNPASDRPVSDSSEQEKPSVEK 296
             S+ +N+ ++SS      +     E  TS+ S ESS+S     +PVSD+S QEK   E+
Sbjct: 211 --SSSTNTHTDSSVINEGHEGHEGHEGKTSTPSKESSQS--LDIKPVSDASAQEKALAEE 266

Query: 297 PSDGQPKPDHHKRGQDALAAAKERFMARKKAKEQ 330
               QPK DHHKR +DA+AAAKERF+ARK+AK+Q
Sbjct: 267 TLAQQPKSDHHKRSEDAVAAAKERFLARKRAKQQ 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470301|ref|XP_004152856.1| PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus] gi|449520024|ref|XP_004167034.1| PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus]

 Score =  280 bits (716), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 179/337 (53%), Positives = 222/337 (65%), Gaps = 24/337 (7%)

Query: 1   MSKYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEI 60
           MSKYGLQLRV PSQQK QPT +PPLP P  F        DDDVE EISRQA KN+ALK+I
Sbjct: 1   MSKYGLQLRVKPSQQK-QPT-RPPLPAPLGF----QDDDDDDVEREISRQASKNKALKDI 54

Query: 61  EEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDI 120
           EEQ +KAL EDP+VFDYDG YDEMK+K V+ +  DR + +PKYI  L+ KA ER+RE +I
Sbjct: 55  EEQHKKALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEI 114

Query: 121 IYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDV 180
           IYERKL KERSK+DHL+A K+KFVTGAYKKKL EQ +W  E+ LR LR+E++DVTKK+D+
Sbjct: 115 IYERKLAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDM 174

Query: 181 SDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKP-----EKEVDKKAEQRRPEKEEIQRAAD 235
           SDFYF+L KNVA+G  N          E T P      ++ +K+ E    EK E     D
Sbjct: 175 SDFYFSLQKNVAYGARN--------AIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGD 226

Query: 236 TPEKERLSAYSNSASESSRGKEGHQAETSTSSRSIESSESNPASDRPVS---DSSEQEKP 292
           T   + L   SN  S S +  E H         S +++ SN     P +    +  QE+P
Sbjct: 227 T-FNDHLLQNSNLPSCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQP 285

Query: 293 SVEKPSDGQPKPDHHKRGQDALAAAKERFMARKKAKE 329
             E+ S+  PK DHHKR +DA+AAAKERF+ARK+AKE
Sbjct: 286 KHEQ-SEQPPKSDHHKRNEDAVAAAKERFLARKRAKE 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102845|ref|XP_002312825.1| predicted protein [Populus trichocarpa] gi|222849233|gb|EEE86780.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 158/284 (55%), Positives = 201/284 (70%), Gaps = 10/284 (3%)

Query: 47  ISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHK 106
           ISRQA KN++LK+IEEQ +KAL EDP+VFDYDG YDEMKQK  + K  DR   + KYI  
Sbjct: 39  ISRQAAKNKSLKDIEEQHKKALEEDPSVFDYDGVYDEMKQKIAQPKALDRQKRESKYIKT 98

Query: 107 LIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRD 166
           L+ KA+ERKR+HD+I+E+ L KERSKEDHLFADK+KFVT AYK+KL EQ++W  E+ LR+
Sbjct: 99  LMGKAEERKRQHDVIFEKNLAKERSKEDHLFADKDKFVTAAYKRKLAEQEKWMEEERLRE 158

Query: 167 LRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPE 226
           LR+E++DVTKK+D+SDFYFNL KNVA G           K  ++K +++ DK+ E R+PE
Sbjct: 159 LREEKEDVTKKSDLSDFYFNLGKNVALGA----------KDLLSKKQEKQDKQTEFRKPE 208

Query: 227 KEEIQRAADTPEKERLSAYSNSASESSRGKEGHQAETSTSSRSIESSESNPASDRPVSDS 286
           K   + A +T +       S    +SS  KE HQ ETS   RS E  +  P SD+P+S +
Sbjct: 209 KPYDKVAGETSDGNHALTDSKFELDSSSVKEAHQKETSPPRRSSEPLDPEPVSDKPISGT 268

Query: 287 SEQEKPSVEKPSDGQPKPDHHKRGQDALAAAKERFMARKKAKEQ 330
           S + K   E+ S  QP PDHHKR QDALAAAKERF+ARKKAK+Q
Sbjct: 269 STEVKNPAEQSSANQPNPDHHKRNQDALAAAKERFLARKKAKQQ 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494919|ref|XP_003617748.1| Coiled-coil domain-containing protein [Medicago truncatula] gi|217075799|gb|ACJ86259.1| unknown [Medicago truncatula] gi|355519083|gb|AET00707.1| Coiled-coil domain-containing protein [Medicago truncatula]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 222/331 (67%), Gaps = 19/331 (5%)

Query: 1   MSKYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEI 60
           M+KYGL LR  P++ KKQP       P  A G ++D   D+DVE EI+ QA K+++LKE+
Sbjct: 1   MNKYGLNLR--PAKPKKQPPR-----PSIALGFNEDD--DNDVEKEIAIQASKSKSLKEV 51

Query: 61  EEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDI 120
           EEQQRKAL EDP +FDYDG YD+MK+K  R  +QDR + +PKYI  LI KA ER++  +I
Sbjct: 52  EEQQRKALEEDPTIFDYDGVYDKMKEKVARPLIQDREERKPKYIQNLIQKAKEREQYREI 111

Query: 121 IYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTD- 179
           +YE+K+ KERSK+DHLFADK+K+VT AY++KL E+++    + +R+L++ER+DVTKK D 
Sbjct: 112 VYEKKIAKERSKDDHLFADKDKYVTEAYRRKLAEREKQMELERIRELQEEREDVTKKKDF 171

Query: 180 VSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPEK 239
           + DFY NL KNVAFG  +      D +A     E  V +K E   P+     +  +T E+
Sbjct: 172 LLDFYTNLDKNVAFGAKDAQGRKRDNRA-----ENRVLEKREGMSPDASNQHQDGNTDEE 226

Query: 240 ERLSAYSNSASESSRGKEGHQAETSTSSRSIESSESNPASDRPVSDSSEQEKPSVEKPSD 299
           +   A ++S  ES   K G Q ETS  S +I +S   P + RP  D+S +EK  VE+P  
Sbjct: 227 QHSLAKTSSPEESPGKKIGDQGETSNLS-NISAS---PLAMRPNPDASAEEKSPVEQPPA 282

Query: 300 GQPKPDHHKRGQDALAAAKERFMARKKAKEQ 330
            QP P+HHKR QDA+AAAKERF+ARK+AK+Q
Sbjct: 283 SQPNPEHHKRSQDAVAAAKERFLARKRAKQQ 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249028|ref|NP_001239725.1| uncharacterized protein LOC100776722 [Glycine max] gi|255634765|gb|ACU17744.1| unknown [Glycine max]

 Score =  271 bits (692), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 176/343 (51%), Positives = 225/343 (65%), Gaps = 40/343 (11%)

Query: 1   MSKYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEI 60
           MSKYGL LR  P++ KKQP  +P L  P  F  DD+    +D+E EI+ QA KN+ LKE+
Sbjct: 1   MSKYGLNLR--PAKPKKQPP-RPSLSTPFGFNEDDE----NDIEREIALQASKNKRLKEV 53

Query: 61  EEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDI 120
           EEQQ+KAL EDP+VFDYDG YD+MK+K  R  VQDR + +PKYI  LI KA ER++  +I
Sbjct: 54  EEQQKKALEEDPSVFDYDGVYDQMKEKVARPLVQDREERKPKYIQNLIKKAKEREQYREI 113

Query: 121 IYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTD- 179
           +YE+K+ KERSK+DHL+A K+KF+T AY+KKL E++R    + LR+L++ERDDVTKK D 
Sbjct: 114 VYEKKIAKERSKDDHLYAGKDKFITEAYRKKLAERERQMELERLRELQEERDDVTKKKDF 173

Query: 180 VSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEE-IQRAADTPE 238
           + DFY NL KNVA+G          K AE  K     D +A  R PE  E +  A++  E
Sbjct: 174 LLDFYANLDKNVAYGA---------KDAEARK----HDNQAGHRVPETHERVSHASNEHE 220

Query: 239 KERLS-------AYSNSASESSRGK-EGHQAETST-SSRSIESSES--NPASDRPVSDSS 287
              +S         S+S +ES R K E  Q E S  S +S  + E+  NP       ++S
Sbjct: 221 PRNVSDEVQHSLGNSSSPAESPRVKIEEDQGEASNPSDKSFNTLETKQNP-------EAS 273

Query: 288 EQEKPSVEKPSDGQPKPDHHKRGQDALAAAKERFMARKKAKEQ 330
            +EK S E+PSD QPKPDHHKR QDALAAAKERF+ARKKAKEQ
Sbjct: 274 MEEKSSSEQPSDSQPKPDHHKRNQDALAAAKERFLARKKAKEQ 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502158|gb|AFK39145.1| unknown [Medicago truncatula]

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 159/331 (48%), Positives = 221/331 (66%), Gaps = 19/331 (5%)

Query: 1   MSKYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEI 60
           M+KYGL LR  P++ KKQP       P  A G ++D   D+DVE EI+ QA K+++LKE+
Sbjct: 1   MNKYGLNLR--PAKPKKQPPR-----PSIALGFNEDD--DNDVEKEIAIQASKSKSLKEV 51

Query: 61  EEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDI 120
           EEQQRKAL EDP +FDYDG YD+MK+K  R  +QDR + +PKYI  LI KA ER++  +I
Sbjct: 52  EEQQRKALEEDPTIFDYDGVYDKMKEKVARPLIQDREERKPKYIQNLIQKAKEREQYREI 111

Query: 121 IYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTD- 179
           +YE+K+ KERSK+DHLFADK+K+VT AY++KL E+++    + +R+L++ER+DVTKK D 
Sbjct: 112 VYEKKIAKERSKDDHLFADKDKYVTEAYRRKLAEREKQMELERIRELQEEREDVTKKKDF 171

Query: 180 VSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPEK 239
           + DFY NL KNVAFG  +      D +A     E  V +K E   P+     +  +T E+
Sbjct: 172 LLDFYTNLDKNVAFGAKDAQGRKRDNRA-----ENRVLEKREGMSPDASNQHQDGNTDEE 226

Query: 240 ERLSAYSNSASESSRGKEGHQAETSTSSRSIESSESNPASDRPVSDSSEQEKPSVEKPSD 299
           +   A ++S  ES   K G Q ETS    ++ +  ++P + RP  D+  +EK  VE+P  
Sbjct: 227 QHSLAKTSSPEESPGKKIGDQGETS----NLFNISASPLAMRPNPDAFAEEKSPVEQPPA 282

Query: 300 GQPKPDHHKRGQDALAAAKERFMARKKAKEQ 330
            QP P+HHKR QDA+AAAKERF+ARK+AK+Q
Sbjct: 283 SQPNPEHHKRSQDAVAAAKERFLARKRAKQQ 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536461|ref|XP_003536756.1| PREDICTED: nuclear speckle splicing regulatory protein 1-like [Glycine max]

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 172/341 (50%), Positives = 219/341 (64%), Gaps = 36/341 (10%)

Query: 1   MSKYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEI 60
           MSKYGL LR    +++    +   L  P  F  DD+    +DVE EI+ QA KN+ LKE+
Sbjct: 1   MSKYGLNLRPPKPKKQPPRPS---LANPFGFNEDDE----NDVEREIALQASKNKRLKEV 53

Query: 61  EEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDI 120
           EEQQ+KAL EDP+VFDYDG YD+MK+K  R  VQDR + +PKYI  LI KA ER++  +I
Sbjct: 54  EEQQKKALEEDPSVFDYDGVYDQMKEKVARPLVQDREERKPKYIQNLIKKAKEREQYREI 113

Query: 121 IYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTD- 179
           +YE+K+ KERSK+DHL+ADK+KF+T AY+KKL E++R    + LR+L++ERDDVTKK D 
Sbjct: 114 VYEKKIAKERSKDDHLYADKDKFITEAYRKKLAERERQMELERLRELQEERDDVTKKKDF 173

Query: 180 VSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEE-IQRAADTPE 238
           + DFY NL KNVA+G          K AE  K E +    AE R PE  E +  A++  E
Sbjct: 174 LLDFYANLDKNVAYGA---------KDAEARKRENQ----AEHRVPETHEGVSLASNEHE 220

Query: 239 KERLS-------AYSNSASESSRGK-EGHQAETST-SSRSIESSESNPASDRPVSDSSEQ 289
              +S         S+S + S R K E  Q E S  S RS      NP   +P  ++S +
Sbjct: 221 NCNVSEEVQHSLGNSSSPAGSPRVKLEEDQGEASNPSDRSF-----NPLETKPNPEASME 275

Query: 290 EKPSVEKPSDGQPKPDHHKRGQDALAAAKERFMARKKAKEQ 330
           EK S E PSD QPKPDHHKR QDA+AAAKERF+ARKKAKEQ
Sbjct: 276 EKGSAELPSDSQPKPDHHKRSQDAVAAAKERFLARKKAKEQ 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826035|ref|XP_002880900.1| hypothetical protein ARALYDRAFT_481627 [Arabidopsis lyrata subsp. lyrata] gi|297326739|gb|EFH57159.1| hypothetical protein ARALYDRAFT_481627 [Arabidopsis lyrata subsp. lyrata]

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 169/339 (49%), Positives = 225/339 (66%), Gaps = 30/339 (8%)

Query: 1   MSKYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEI 60
           M KYGLQ+R  PSQ KKQ +++PPL     FG ++D     DVE EISRQA K +ALKEI
Sbjct: 1   MKKYGLQIRA-PSQ-KKQSSSRPPLRLASIFGEEEDH----DVEKEISRQASKTKALKEI 54

Query: 61  EEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDI 120
           EEQ +KAL EDP+ F YD  YD+MKQK+V  ++QDR + +P+YI  L+ +A+ R++EH+I
Sbjct: 55  EEQHKKALEEDPSAFAYDEVYDDMKQKAVLPRMQDREERKPRYIQHLMKQAERREKEHEI 114

Query: 121 IYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDV 180
           +YERKL KER K++HLF+DKEKFVTGAYK+KLEEQ++W  E+ LR+LR+ERDDVTKK D+
Sbjct: 115 VYERKLAKEREKDEHLFSDKEKFVTGAYKRKLEEQKKWLAEERLRELREERDDVTKKKDL 174

Query: 181 SDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPEKE 240
           SDFYFN+ KNVAFG  + ++             KEV++  EQR+ EK E QR A+  E+ 
Sbjct: 175 SDFYFNIGKNVAFGARDIEA-------------KEVERLEEQRKAEKLEEQRRAEKLEEL 221

Query: 241 RLSAYSNSASESSRGKEGHQAETSTSSRSIESSES---------NPASDRPV-SDSSEQE 290
           R           S  KE  + E S  SR   SS S            S++ + SD +E+ 
Sbjct: 222 RKEETREEKKRKSPEKELPEKELSPDSRDFGSSRSKSLEPQEAEQAVSEKKMGSDGTEER 281

Query: 291 KPSVEKPSDGQPKP-DHHKRGQDALAAAKERFMARKKAK 328
             S+++ +   PK  + HKR +DA+AAAKERF+ARKKAK
Sbjct: 282 DSSIKEAAKEVPKAVNDHKRREDAIAAAKERFLARKKAK 320

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401381|ref|NP_565644.1| Coiled-coil domain-containing protein 55 (DUF2040) [Arabidopsis thaliana] gi|20197674|gb|AAM15195.1| Expressed protein [Arabidopsis thaliana] gi|21553752|gb|AAM62845.1| unknown [Arabidopsis thaliana] gi|26452543|dbj|BAC43356.1| unknown protein [Arabidopsis thaliana] gi|28973091|gb|AAO63870.1| unknown protein [Arabidopsis thaliana] gi|51968604|dbj|BAD42994.1| unknown protein [Arabidopsis thaliana] gi|51968616|dbj|BAD43000.1| unknown protein [Arabidopsis thaliana] gi|330252874|gb|AEC07968.1| Coiled-coil domain-containing protein 55 (DUF2040) [Arabidopsis thaliana]

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 170/332 (51%), Positives = 230/332 (69%), Gaps = 21/332 (6%)

Query: 1   MSKYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEI 60
           M KYGLQ+R  PSQ KKQ +++PPL P   F    D   D DVE EISRQA K +A KEI
Sbjct: 1   MKKYGLQIRA-PSQ-KKQSSSRPPLRPASIF----DEEEDHDVEKEISRQATKTKAHKEI 54

Query: 61  EEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDI 120
           EEQ +KAL EDP+ F YD  YD+MKQK+V  ++QDR + +P+YI  L+ +A+ R++EH+I
Sbjct: 55  EEQHKKALEEDPSAFSYDEVYDDMKQKAVLPRMQDREERKPRYIQNLMKQAERREKEHEI 114

Query: 121 IYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDV 180
           +YERKL KER K++HLF+DKEKFVTGAYK+KLEEQ++W  E+ LR+LR+ERDDVTKK D+
Sbjct: 115 VYERKLAKEREKDEHLFSDKEKFVTGAYKRKLEEQKKWLAEERLRELREERDDVTKKKDL 174

Query: 181 SDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEK-EEIQRAADTPEK 239
           SDFYFN+ KNVAFG    ++   +K  E  K E    K  EQR+ EK EE+++     EK
Sbjct: 175 SDFYFNIGKNVAFGAREVEAKEAEKLEEQRKAE----KLEEQRKAEKLEELRKEVTRVEK 230

Query: 240 ERLSAYSNSASESSRGKEGHQAETSTSSRSIESSESNPA-SDRPV-SDSSEQEKPSVEKP 297
           +R S     + +S  G+ G     S+ S+S+E  E+  A S++ + SD +E+ K S+++ 
Sbjct: 231 KRKSPEKEVSPDS--GEFG-----SSRSKSLEPLEAEQAVSEKEMGSDGTEERKSSIKEA 283

Query: 298 SDGQPKP-DHHKRGQDALAAAKERFMARKKAK 328
           +   PK  +  KR +DA+AAAKERF+ARKKAK
Sbjct: 284 AKEVPKAINDQKRREDAIAAAKERFLARKKAK 315

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:505006274	323	AT2G27285 [Arabidopsis thalian	0.836	0.854	0.484	1.6e-67
TAIR|locus:2039620	427	AT2G27280 "AT2G27280" [Arabido	0.696	0.538	0.429	7.8e-56
TAIR|locus:1009023139	298	AT1G55928 "AT1G55928" [Arabido	0.581	0.644	0.472	1.6e-45
MGI|MGI:2144305	542	Ccdc55 "coiled-coil domain con	0.866	0.527	0.308	1.7e-26
RGD|1309863	547	Nsrp1 "nuclear speckle splicin	0.590	0.356	0.367	1.8e-26
UNIPROTKB|Q2KIC0	559	NSRP1 "Nuclear speckle splicin	0.739	0.436	0.321	5.8e-26
UNIPROTKB|F1MMV5	558	NSRP1 "Nuclear speckle-splicin	0.739	0.437	0.321	7.3e-26
UNIPROTKB|E2QUP1	553	NSRP1 "Uncharacterized protein	0.551	0.329	0.379	1.1e-25
UNIPROTKB|Q9H0G5	558	NSRP1 "Nuclear speckle splicin	0.490	0.290	0.401	2.2e-25
UNIPROTKB|F1P283	543	NSRP1 "Uncharacterized protein	0.421	0.255	0.450	4.8e-25

TAIR|locus:505006274 AT2G27285 [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
 Identities = 140/289 (48%), Positives = 195/289 (67%)

Query:    43 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPK 102
             VE EISRQA K +A KEIEEQ +KAL EDP+ F YD  YD+MKQK+V  ++QDR + +P+
Sbjct:    37 VEKEISRQATKTKAHKEIEEQHKKALEEDPSAFSYDEVYDDMKQKAVLPRMQDREERKPR 96

Query:   103 YIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQ 162
             YI  L+ +A+ R++EH+I+YERKL KER K++HLF+DKEKFVTGAYK+KLEEQ++W  E+
Sbjct:    97 YIQNLMKQAERREKEHEIVYERKLAKEREKDEHLFSDKEKFVTGAYKRKLEEQKKWLAEE 156

Query:   163 ALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQ 222
              LR+LR+ERDDVTKK D+SDFYFN+ KNVAFG    ++    K+AE  + +++ +K  EQ
Sbjct:   157 RLRELREERDDVTKKKDLSDFYFNIGKNVAFGAREVEA----KEAEKLEEQRKAEKLEEQ 212

Query:   223 RRPEK-EEIQRAADTPEKERLXXXXXXXXXXXRGKEGHQAXXXXXXXXXXXXXXNPASDR 281
             R+ EK EE+++     EK+R             G+ G                    S++
Sbjct:   213 RKAEKLEELRKEVTRVEKKRKSPEKEVSPDS--GEFG----SSRSKSLEPLEAEQAVSEK 266

Query:   282 PV-SDSSEQEKPSVEKPSDGQPKP-DHHKRGQDALAAAKERFMARKKAK 328
              + SD +E+ K S+++ +   PK  +  KR +DA+AAAKERF+ARKKAK
Sbjct:   267 EMGSDGTEERKSSIKEAAKEVPKAINDQKRREDAIAAAKERFLARKKAK 315

GO:0005634 "nucleus" evidence=ISM

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

TAIR|locus:2039620 AT2G27280 "AT2G27280" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
 Identities = 103/240 (42%), Positives = 156/240 (65%)

Query:     1 MSKYGLQLRVNXXXXXXXXXXXXXXXXXXAFGLXXXXXXXXXVEGEISRQAIKNRALKEI 60
             + KYGLQ+R                     FG          VE EISRQA K ++LK+I
Sbjct:   142 IKKYGLQIRAPSQKKQSSSRPLLRTASI--FG---EDDEENDVEKEISRQASKTKSLKKI 196

Query:    61 EEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDI 120
             E+Q +KA+ EDP+ F YD  YD++K ++   ++QDR + + +YI  ++ +A+ R++EH+I
Sbjct:   197 EKQHKKAIEEDPSAFAYDEVYDDIKHEAALPRMQDREEHKSRYIQHIMKQAERREKEHEI 256

Query:   121 IYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDV 180
             +YERKL KER+K++HL++DKEKFVTG +K+KLEEQ++W  E+ LR+LR+ERDDVTKK D+
Sbjct:   257 VYERKLAKERAKDEHLYSDKEKFVTGPFKRKLEEQKKWLEEERLRELREERDDVTKKNDL 316

Query:   181 SDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPEKE 240
             S+FY N+ KNVAFG  + ++    +  E+ K ++  + + E+ R EK+       +PEKE
Sbjct:   317 SEFYINIGKNVAFGARDIEAREAGRLKELRKVDRLEELRKEETRKEKKR-----KSPEKE 371

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023139 AT1G55928 "AT1G55928" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
 Identities = 93/197 (47%), Positives = 136/197 (69%)

Query:    43 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRAD-TQP 101
             V+ EISRQA K ++LK+ EEQ +KAL EDP  F YD  YD+ KQ++   ++ +R +  +P
Sbjct:    43 VDKEISRQASKTKSLKKFEEQHKKALEEDPCAFAYDEVYDDTKQEAPLPRLHERQECNKP 102

Query:   102 KYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWARE 161
              Y   +  KAD R++E +I+YERKL KER+KE HLF D+ K VTG+YK+KLEE+ +W  E
Sbjct:   103 IYNQLMKEKADRRQKEREIVYERKLAKERAKEQHLFPDQVKVVTGSYKRKLEERDQWLSE 162

Query:   162 QALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGN---KDSMNLDKKAEVTKPEKEVDK 218
             + LR+L +E+DDVTKK D+SDFYFN+ KNVAFG  +   +++  L ++ +V K E E+ +
Sbjct:   163 ERLRELGEEKDDVTKKKDLSDFYFNIGKNVAFGARDIKARETERLKEQRKVPKLE-ELRE 221

Query:   219 KAEQRRPEKEEIQRAAD 235
             K +   PE+  +  + D
Sbjct:   222 KMKTESPERVVLPDSRD 238

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2144305 Ccdc55 "coiled-coil domain containing 55" [Mus musculus (taxid:10090)]

 Score = 304 (112.1 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 93/301 (30%), Positives = 143/301 (47%)

Query:    43 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQ 100
             V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +
Sbjct:    40 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRK 99

Query:   101 PKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQ-QRWA 159
             PKYIH L+   + RK+E +   E+K+ +ER  E+  F DKE FVT AYKKKLEE+ +   
Sbjct:   100 PKYIHNLLKAVEIRKKEQEKRMEKKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEE 159

Query:   160 REQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEK---EV 216
             RE+    L +   DVTK+ D+S FY +L  N A G       +  +   V K EK     
Sbjct:   160 REKRAAAL-EAHLDVTKQKDLSGFYRHL-LNQAVGEEAAPKSSFREARTVIKEEKLRGYP 217

Query:   217 DKKAEQRRPEKEE--IQRAADTPEKERLXXXXXXXXXXXRG-KEGHQAXXXXXXXXXXXX 273
             D+   + RP ++   +QR A   E+               G K  H+             
Sbjct:   218 DETNSESRPPQQSCVLQRGAQEAEENPDADREFDDESSEDGEKRDHKVKSRGEDTGASMK 277

Query:   274 XXNPASDRPVSDSSEQEKP-SVEKPSDGQPKPDH-H--KRGQDALAAAKERFMARKKAKE 329
                   +R  S SS +E+    +  S G     H H  ++ +D  +  K+R    +K+  
Sbjct:   278 HPKHHKNRAHSRSSSEERGLGTKHHSRGSQSRGHEHQDRQSRDQESCHKDRSHREEKSSH 337

Query:   330 Q 330
             +
Sbjct:   338 R 338

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=ISO

GO:0008380 "RNA splicing" evidence=IEA

GO:0016607 "nuclear speck" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0032502 "developmental process" evidence=ISO

RGD|1309863 Nsrp1 "nuclear speckle splicing regulatory protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 289 (106.8 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
 Identities = 75/204 (36%), Positives = 113/204 (55%)

Query:    43 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQ 100
             V   + R+A K +A+++ + + +KALAED  V++YD  YDEM++K      K+    D +
Sbjct:    40 VSESLQREAAKKQAMRQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRK 99

Query:   101 PKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQ-QRWA 159
             PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKLEE+ +   
Sbjct:   100 PKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLEERAEEEE 159

Query:   160 REQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEK---EV 216
             RE+    L + R DVTK+ D+S FY +L  N A G       +  +   V K EK     
Sbjct:   160 REKRAAAL-EARLDVTKQKDLSGFYRHL-LNQAVGEEAVPKSSFREARTVIKEEKLRGYP 217

Query:   217 DKKAEQRRPEKE-EIQRAADTPEK 239
             D+   + RP++   +Q   +  E+
Sbjct:   218 DETNSENRPQQNCALQSGVEEAEE 241

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IEA;ISO;ISS

GO:0003729 "mRNA binding" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA;ISO;ISS

GO:0008380 "RNA splicing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA;ISO;ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA;ISO;ISS

GO:0032502 "developmental process" evidence=IEA;ISO;ISS

UNIPROTKB|Q2KIC0 NSRP1 "Nuclear speckle splicing regulatory protein 1" [Bos taurus (taxid:9913)]

 Score = 283 (104.7 bits), Expect = 5.8e-26, Sum P(2) = 5.8e-26
 Identities = 84/261 (32%), Positives = 128/261 (49%)

Query:    43 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQ 100
             V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +
Sbjct:    42 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRK 101

Query:   101 PKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQ-QRWA 159
             PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKL+E+ +   
Sbjct:   102 PKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEE 161

Query:   160 REQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEV--- 216
             RE+    L + R DVTK+ D+S FY +L  N A G     + +  +     K EK     
Sbjct:   162 RERRAAAL-EARLDVTKQRDLSGFYRHL-LNQAVGEEEVPTCSFREARSEIKEEKSKGYS 219

Query:   217 -DKKAEQRRPEKEEIQRAA----DTPEKERLXXXXXXXXXXXRGKEGH--QAXXXXXXXX 269
              +  +E R P +  I++      + P+ +              G +G+  +         
Sbjct:   220 DEVSSESRIPPENCIRQTGVKVEENPDADSDFDAKSSENDEMEGDKGNCRREKGTETLSS 279

Query:   270 XXXXXXNPASDRPVSDSSEQE 290
                   NPA  R  S S E+E
Sbjct:   280 HSKHHRNPA--RSPSSSEERE 298

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0016607 "nuclear speck" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0032502 "developmental process" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=ISS

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|F1MMV5 NSRP1 "Nuclear speckle-splicing regulatory protein 1" [Bos taurus (taxid:9913)]

 Score = 283 (104.7 bits), Expect = 7.3e-26, Sum P(2) = 7.3e-26
 Identities = 84/261 (32%), Positives = 128/261 (49%)

Query:    43 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQ 100
             V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +
Sbjct:    42 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRK 101

Query:   101 PKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQ-QRWA 159
             PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKL+E+ +   
Sbjct:   102 PKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEE 161

Query:   160 REQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEV--- 216
             RE+    L + R DVTK+ D+S FY +L  N A G     + +  +     K EK     
Sbjct:   162 RERRAAAL-EARLDVTKQRDLSGFYRHL-LNQAVGEEEVPTCSFREARSEIKEEKSKGYS 219

Query:   217 -DKKAEQRRPEKEEIQRAA----DTPEKERLXXXXXXXXXXXRGKEGH--QAXXXXXXXX 269
              +  +E R P +  I++      + P+ +              G +G+  +         
Sbjct:   220 DEVSSESRIPPENCIRQTGVKVEENPDADSDFDAKSSENDEMEGDKGNCRREKGTETLSS 279

Query:   270 XXXXXXNPASDRPVSDSSEQE 290
                   NPA  R  S S E+E
Sbjct:   280 HSKHHRNPA--RSPSSSEERE 298

GO:0032502 "developmental process" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IEA

UNIPROTKB|E2QUP1 NSRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
 Identities = 71/187 (37%), Positives = 103/187 (55%)

Query:    31 FGLXXXXXXXXXVEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVR 90
             FG          V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K   
Sbjct:    29 FGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSIYDEMQKKREE 88

Query:    91 R--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAY 148
                K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AY
Sbjct:    89 NNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAY 148

Query:   149 KKKLEEQ-QRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKA 207
             KKKL+E+ +   RE+    L + R DVTK+ D+S FY +L  N A G     + +  +  
Sbjct:   149 KKKLQERAEEEEREKRAAAL-EARLDVTKQKDLSGFYRHL-LNQAVGEEEVPTCSFREAR 206

Query:   208 EVTKPEK 214
                K EK
Sbjct:   207 SEIKEEK 213

GO:0032502 "developmental process" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IEA

UNIPROTKB|Q9H0G5 NSRP1 "Nuclear speckle splicing regulatory protein 1" [Homo sapiens (taxid:9606)]

 Score = 273 (101.2 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
 Identities = 67/167 (40%), Positives = 96/167 (57%)

Query:    31 FGLXXXXXXXXXVEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVR 90
             FG          V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K   
Sbjct:    29 FGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQKKKEE 88

Query:    91 R--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAY 148
                K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AY
Sbjct:    89 NNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAY 148

Query:   149 KKKLEEQ-QRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFG 194
             KKKL+E+ +   RE+    L +   DVTK+ D+S FY +L  N A G
Sbjct:   149 KKKLQERAEEEEREKRAAAL-EACLDVTKQKDLSGFYRHL-LNQAVG 193

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IDA

GO:0003729 "mRNA binding" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=IDA

GO:0016607 "nuclear speck" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0032502 "developmental process" evidence=IMP

UNIPROTKB|F1P283 NSRP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 291 (107.5 bits), Expect = 4.8e-25, P = 4.8e-25
 Identities = 68/151 (45%), Positives = 97/151 (64%)

Query:    45 GE-ISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQK---SVRRKVQDRADTQ 100
             GE + ++A+K +A+K+ + + +KAL+ED  V++YD  YDEM+QK   S  R +  R + +
Sbjct:    34 GESLQKEALKKQAMKQTKLEIQKALSEDATVYEYDSIYDEMQQKKKESSARLLSGRDEKK 93

Query:   101 PKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKL----EEQQ 156
             P+YIH ++  A+ RK+E +   ERK+ KER  E   FADKE FVT AYKKKL    EE++
Sbjct:    94 PRYIHNILKAAEIRKKEQEKRMERKIQKEREMEGGEFADKEAFVTSAYKKKLQERAEEEE 153

Query:   157 RWAREQALRDLRDERDDVTKKTDVSDFYFNL 187
             R  RE AL    D    VTK+ D+S FY +L
Sbjct:   154 RERREAALEAYLD----VTKQKDLSGFYRHL 180

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0032502 "developmental process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
pfam09745	128	pfam09745, DUF2040, Coiled-coil domain-containing	6e-28
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004

>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55 (DUF2040)

 Score =  105 bits (263), Expect = 6e-28
 Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 4/126 (3%)

Query: 58  KEIEEQQRKALAEDPNVFDYDGCYDEMKQKSV----RRKVQDRADTQPKYIHKLIHKADE 113
           K+  ++ +KAL EDP+++DYD  YD +K         +  + + + +PKYI  L+  A+ 
Sbjct: 1   KKARKEAQKALEEDPSIYDYDEVYDSIKAAKEEKKQAKLSERKENRKPKYIGSLLEAAER 60

Query: 114 RKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDD 173
           RKRE +I  ERKL KER KE   FADKEKFVT AYKK+LEE ++   E+  R+  +E +D
Sbjct: 61  RKREREIAEERKLQKEREKEGDEFADKEKFVTSAYKKQLEENRKLEEEEKEREELEEEND 120

Query: 174 VTKKTD 179
           VTK  D
Sbjct: 121 VTKGKD 126

This entry is a conserved domain of approximately 130 residues of proteins conserved from fungi to humans. The proteins do contain a coiled-coil domain, but the function is unknown. Length = 128

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.6 bits (89), Expect = 0.004
 Identities = 57/281 (20%), Positives = 113/281 (40%), Gaps = 3/281 (1%)

Query: 50   QAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIH 109
            +A + R   E+++ + K  A++    +     DE K+K+   K  D A  + +   K   
Sbjct: 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332

Query: 110  KADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRD 169
             A ++  E     E    +  +  D   A +EK    A KKK E +++    +   + + 
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKAEEKK 1391

Query: 170  ERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEE 229
            + D+  KK +      +  K  A     K +    KKAE  K   E  KKAE+ +   E 
Sbjct: 1392 KADEAKKKAEEDKKKADELKKAA--AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA 1449

Query: 230  IQRAADTPEKERLSAYSNSASESSRGKEGHQAETSTSSRSIESSESNPASDRPVSDSSEQ 289
             ++A +  + E     +  A ++   K+  +          ++ E+   +D     +  +
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509

Query: 290  EKPSVEKPSDGQPKPDHHKRGQDALAAAKERFMARKKAKEQ 330
            +K    K ++   K D  K+ ++A  A + +    KK  ++
Sbjct: 1510 KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
KOG2117	379	consensus Uncharacterized conserved protein [Funct	100.0
PF09745	127	DUF2040: Coiled-coil domain-containing protein 55	100.0

>KOG2117 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.7e-60  Score=456.56  Aligned_cols=270  Identities=41%  Similarity=0.647  Sum_probs=229.3

Q ss_pred             cccccccccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccchhh
Q 020162            2 SKYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCY   81 (330)
Q Consensus         2 KkYGLil~kkp~~~Kk~~~~Kp~~~~~svF~~~dDsDee~dv~~~i~r~a~k~k~~kk~~~~~~kAleeDpsVfdYD~vY   81 (330)
                      .+|||+|++     |+.++. |++++++|||  |  |++.+|..++++++++.++++.++.+|+|||++|||||+||+||
T Consensus         6 ~q~gl~~~K-----K~~~~~-~~lr~ssvfg--d--~~~~~v~~e~~r~ask~~~~k~ae~qhqKAlaEDptif~YDe~Y   75 (379)
T KOG2117|consen    6 RQYGLNLQK-----KKKPSE-PPLRIASVFG--D--DDDSSVEKEISRQASKTKSQKTAERQHQKALAEDPTIFGYDEVY   75 (379)
T ss_pred             ccccccccc-----cccCCC-CCcCCCcccC--C--ccccchhhhccccchHHHHHHHHHHHHHHhhhcCCchhccchhh
Confidence            379999973     345556 8999999999  5  36788999999999999999999999999999999999999999


Q ss_pred             hhhhhhh--hhhhhhhhccc-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccccCCccceecHHHHHHHHHHHHH
Q 020162           82 DEMKQKS--VRRKVQDRADT-QPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRW  158 (330)
Q Consensus        82 D~mk~k~--~~~k~~~~~~r-KPKYI~~LlkaAe~RKrE~e~~~ERkiqKEREaEgdeF~DKE~FVTsAYKkKLEE~rk~  158 (330)
                      |+|+.+.  ..+.+.....+ +||||+|||++|++|++|+++++||+|+||||+|||+|.|||+|||+|||++|||+++|
T Consensus        76 Ddmq~kk~e~~~~~~~~~~r~kPkYi~nLie~aerRkkE~e~r~ERkl~KeREkEg~~fdDkekfVTgAYKKklEE~~k~  155 (379)
T KOG2117|consen   76 DDMQSKKREQLPRLRLREKRRKPKYIENLIEAAERRKKEQELRYERKLLKEREKEGDEFDDKEKFVTGAYKKKLEEVKKW  155 (379)
T ss_pred             HHHHHHHhhhhHhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHHHH
Confidence            9997543  33555555555 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHhhhhhhccCCCchhHHHHHHHhhhhcCCCCCCCcchhhhhhccCchhhhhhhhhhcCcchHHHhhhcCChh
Q 020162          159 AREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPE  238 (330)
Q Consensus       159 eEeEr~~e~~Ee~~dvtKq~dLsgFYr~LlkN~a~G~~~~~~~~~~~~~E~~~~~~~~~~~~e~r~~e~~~~~~~~~~~~  238 (330)
                      +|+|++++++++..||||++||+|||+||+.|  ||...++.....+++|.    +.|.++++.|               
T Consensus       156 ~e~Ek~~e~~e~~ddVTKqKDls~fy~~~~~n--~g~~q~~v~~~q~~keq----r~v~k~e~~~---------------  214 (379)
T KOG2117|consen  156 LEQEKEEEALEATDDVTKQKDLSGFYRHLGEN--FGAAQAEVEKVQRLKEQ----RKVIKLEEKR---------------  214 (379)
T ss_pred             HHHHHHHHHHhhhcchhhhhhHHHHHHHHHhh--cchhhhhhhhhhcchhh----hhhhhhhhhh---------------
Confidence            99999999999999999999999999999889  88888888777777666    4455544444               


Q ss_pred             hhhhcccccccccCCCCcc-CCCCCCCCCCC-ccCccCCCCC--CCCCCCCCccc-cCCCCCCCCCCCCCC--cccccc
Q 020162          239 KERLSAYSNSASESSRGKE-GHQAETSTSSR-SIESSESNPA--SDRPVSDSSEQ-EKPSVEKPSDGQPKP--DHHKRG  310 (330)
Q Consensus       239 ~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~r-s~~~~~~~~~--~~~~~~d~~~~-~~~~~e~~~~~~pk~--~~~k~~  310 (330)
                              +.+..+|.... .+.++++.++. |.+.+++.+.  +-.+++|...+ +++++.+...+.|..  .||+.+
T Consensus       215 --------e~~~~~pek~~~p~a~~~g~s~~k~de~~ea~~~~~~k~~~~d~~ee~n~~s~k~a~~~~~~s~~~~~~~~  285 (379)
T KOG2117|consen  215 --------EEKDESPEKNRIPDAKKIGQSLSKSDENEEADQRQDQKESLSDRKEETNNSSRKEAAKHHPSSDKRHLKPS  285 (379)
T ss_pred             --------hhcccCchhccCCchhhhcchhhccccchhhccccchhhcccccchhhcchhhhhhhhcCchhhhhhcccc
Confidence                    12234444444 68888888765 7888888883  77888998888 899999999999966  566655

>PF09745 DUF2040: Coiled-coil domain-containing protein 55 (DUF2040); InterPro: IPR018612 This entry represents a conserved domain of approximately 130 residues of proteins conserved from fungi to humans

Probab=100.00  E-value=6.7e-43  Score=297.64  Aligned_cols=122  Identities=51%  Similarity=0.822  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHhcCCCccccchhhhhhhhhhhhh---h-hhhhcccCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 020162           59 EIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR---K-VQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKED  134 (330)
Q Consensus        59 k~~~~~~kAleeDpsVfdYD~vYD~mk~k~~~~---k-~~~~~~rKPKYI~~LlkaAe~RKrE~e~~~ERkiqKEREaEg  134 (330)
                      +++.++++||++|||||+||+|||+|+.++...   . ......++||||++||++|++|++|+++++||+|||||++||
T Consensus         2 ~~~~~~~~A~~~DptvfdYD~vYD~m~~~~~~~~~~~~~~~~~~rkpKYi~~Ll~~A~~Rk~E~~~~~ErklqKERe~Eg   81 (127)
T PF09745_consen    2 QAKKEAQKALEEDPTVFDYDEVYDDMKAKKEEKKQAKQQEDKEKRKPKYISNLLKAAKRRKRERERAEERKLQKEREAEG   81 (127)
T ss_pred             chHHHHHHHhccCChHhhHHHHHHHHhhhhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            578899999999999999999999999775432   2 123346999999999999999999999999999999999999


Q ss_pred             cccCCccceecHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCch
Q 020162          135 HLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDV  180 (330)
Q Consensus       135 deF~DKE~FVTsAYKkKLEE~rk~eEeEr~~e~~Ee~~dvtKq~dL  180 (330)
                      ++|+|||+|||+|||++|+|+++|++++++++++++.++||++++|
T Consensus        82 ~~f~dkE~FVT~AYKkkleE~k~~eeee~~~e~~e~~~~~~k~~dl  127 (127)
T PF09745_consen   82 DEFADKEKFVTSAYKKKLEERKKWEEEEKRREELEEKNDVTKQKDL  127 (127)
T ss_pred             cccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCC
Confidence            9999999999999999999999999999999999999999999886

Some proteins containing this domain are described as coiled-coil domain-containing protein 55, but the function is unknown.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 36/152 (23%)

Query: 29  KAFGLDDDGGGDDDVEGEISRQAIKNRALKEI------EEQQRKALAEDPNVFDYDGCYD 82
            AF  + D     DV+ ++ +  +    +  I           +       +F       
Sbjct: 27  DAFVDNFDC---KDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLR-------LFW---TLL 72

Query: 83  EMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEK 142
             +++ V++ V++      K++   I     +      +Y         + D L+ D + 
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-------EQRDRLYNDNQV 125

Query: 143 FVTGAYKKKLE---EQQRWAREQALRDLRDER 171
           F       K      Q      QAL +LR  +
Sbjct: 126 F------AKYNVSRLQPYLKLRQALLELRPAK 151

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 31/252 (12%), Positives = 74/252 (29%), Gaps = 86/252 (34%)

Query: 49  RQAIKN--RALKEIEEQQR-KALAEDPNVFDYD-----------------GCYDEMKQKS 88
              I++    L+  E ++    L+    VF                         +  K 
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLS----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 89  VRRKVQDRADTQPK----YIH----KLIHKADERKREHDIIYER-KLTKERSKED----- 134
            +  + ++   QPK     I     +L  K +     H  I +   + K    +D     
Sbjct: 412 HKYSLVEK---QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 135 -----------HLF----ADKEKFVTGAY------KKKLE-EQQRWAREQA----LRDLR 168
                      HL      ++       +      ++K+  +   W    +    L+ L+
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528

Query: 169 DERDDVTKK--------TDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKA 220
             +  +             + DF   + +N+          +L + A +   ++ + ++A
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLI----CSKYTDLLRIA-LMAEDEAIFEEA 583

Query: 221 EQRRPEKEEIQR 232
            +      ++QR
Sbjct: 584 HK------QVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00