Citrus Sinensis ID: 020211

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MSMLSAPFCVRTVSGFHGTNKTVRTNAGRLVSNSLSASPFRLPMQLCFTSSFPKSVLLFCKSSRGSFGRRFSKNADDHDHDFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKLLKLRKSIHDH
Secondary Structure (PSIPRED)
cccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccEEcccccEEEEEEEcccEEEEcccccccccccccccccccccEEEEEEEEEEccccccEEEEEEEccccEEEEEEccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccEEEEEEEEEEEccEEEEEEEEEcccccEEEEEEccHHHHHHHHHHHcccEEEEHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEccccccccccccccEEcccccccccccccccHccccccccEEEEEEEccccccccccccccccccHHHcccEEEEEEEEEEcccccccEEEEEcccccEEEcccccccccccEEEEEEEEEccccccccEEEEEEccccccEcEEEEccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEccccEEEEEEEccccHHHHHHHHccccEEEcHHHHHHcccEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msmlsapfcvrtvsgfhgtnktvrtnagrlvsnslsaspfrlpmqlcftssfpkSVLLFCKssrgsfgrrfsknaddhdhdflqasllvpetmwhhrmrkqgyrenmkwqssgqlvpfsvrtkeprgdvtsigpeflrrfqsptiflkiscdgdfllpiIVGEFAVDKLLYALLddgededcpdqFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLylskpgkneiisvdvrpsdainvanrceapiyvskhIVLKDAIRIgygmgrahgakatydvsldsaaegpdsvteeFDLVKNMDIAVREERYNDAAKFRDKLLKLRKSIHDH
Flexible Loop (DISEMBL)
msmlsapfcvrtvsgfhgtnktvrtnagrlvSNSLSASPFRLPMQLCFTSSFPKSVLLFCKSSRGSFGRRfsknaddhdHDFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQlvpfsvrtkeprgdvtsigpeflrrfQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKlylskpgkneiiSVDVRPSDAINvanrceapiyvskhivLKDAIRIGYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVReeryndaakfrdKLLKLRKSIHDH
Low Complexity Region (SEG)
MSMLSAPFCVRTVSGFHGTNKTVRTNAGRLVSNSLSASPFRLPMQLCFTSSFPKSVLLFCKssrgsfgrrfsKNADDHDHDFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKLLKLRKSIHDH
Disordered region (IsUnstruct)
******PFCVRTVSGFHGTNKTVRTNAGRLVSNSLSASPFRLPMQLCFTSSFPKSVLLFCKSSRGSFG**********DHDFLQASLLVPETMWHHRMRKQGYR****W*****LVPF**********VTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYA************QFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHGAKATYDVSL*************FDLVKNMDIAVREERYN*******************
Disordered Region (DISOPRED)
************VSGFHGTNKTVRTNAGRLVSNSLS********************************************DFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQL*************VTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALL*******CPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDA**********************************FDLVKNMDIAVREERYNDAAKFR*************
Disordered Region (DISEMBL)
MSMLSAPFCVRTVSGFHGTNKTVRTNAGRLVSNSLSASPFRLPMQLCFTSSFPKSVLLFCKSSRGSFGRRFSKNADDHDHDFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKLLKLRKSIHDH
Disordered Region (DISPRO)
***LSAPFCVRTVSGFHGTNKTVRTNAGRLVSNSLSASPFRLPMQLCFTSSFPKSVLLFCKS**************DHDHDFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIG**********************GPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKLLKLR******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSMLSAPFCVRTVSGFHGTNKTVRTNAGRLVSNSLSASPFRLPMQLCFTSSFPKSVLLFCKSSRGSFGRRFSKNADDHDHDFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKLLKLRKSIHDH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q93VH2	329	Bifunctional nuclease 2 O	no	no	0.541	0.541	0.434	1e-30
Q9FWS6	325	Bifunctional nuclease 1 O	no	no	0.541	0.547	0.408	2e-28
Q6YZM6	325	Bifunctional nuclease 2 O	yes	no	0.534	0.541	0.414	4e-28
B8A8D2	331	Bifunctional nuclease 1 O	N/A	no	0.574	0.570	0.395	1e-27
Q5N8J3	331	Bifunctional nuclease 1 O	no	no	0.574	0.570	0.395	2e-27
Q09LL3	331	Bifunctional nuclease OS=	N/A	no	0.574	0.570	0.395	2e-27
Q50604	164	Uncharacterized protein R	yes	no	0.389	0.780	0.272	8e-07

>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 113/184 (61%), Gaps = 6/184 (3%)

Query: 144 TIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMV 203
            I LK+      LLPIIV E     L+ A+ +       P  +Q VK++V+K+GYEV++V
Sbjct: 139 AIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR--PTMYQVVKDMVDKMGYEVRLV 196

Query: 204 RITERVVNTYFAKLYLSKPG-KNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRI 262
           R+T RV   YFA+LYLSK G K++ +S D+RPSDAIN+A RC+ PI V+K++   D +R+
Sbjct: 197 RVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 256

Query: 263 ---GYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKL 319
              G    +   +       LD     P   T+EFDLV+NM  AV EERY++AA++RDKL
Sbjct: 257 IDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMMQAVDEERYDEAAEWRDKL 316

Query: 320 LKLR 323
            K +
Sbjct: 317 GKFQ 320

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 113/186 (60%), Gaps = 8/186 (4%)

Query: 143 PTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKM 202
           P I LK+      LLPIIV E     L+ A+ +       P  +Q VK +V+K+GYEV++
Sbjct: 134 PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR--PTMYQVVKEMVDKMGYEVRL 191

Query: 203 VRITERVVNTYFAKLYLSKPGK-NEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIR 261
           VR+T+RV   YFA+L+LSK G  +E +S D+RPSDAIN+A RC+ PI V+K++   D +R
Sbjct: 192 VRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAVRCKIPIQVNKYLAYSDGMR 251

Query: 262 IGYGMGRAHGAKATYDVSLDSAAEGPDSV----TEEFDLVKNMDIAVREERYNDAAKFRD 317
           +    G+        D  L +  + P+      T+EF+++  M  AV EERY++AA++RD
Sbjct: 252 V-IESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSKMMQAVDEERYDEAAEWRD 310

Query: 318 KLLKLR 323
           KL + R
Sbjct: 311 KLGQFR 316

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2 PE=2 SV=1

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 108/188 (57%), Gaps = 12/188 (6%)

Query: 143 PTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKM 202
           P I L+I    + LLPIIV E     L+ A+ +       P  +Q VK +++K+GYEVK+
Sbjct: 136 PAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIAR--PTIYQVVKEMIDKMGYEVKL 193

Query: 203 VRITERVVNTYFAKLYLSKPGKN-EIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAI- 260
           VRI +R+   Y A+L+L+K G + E I+ D+RPSDAIN+A RC+ PI V + +   D I 
Sbjct: 194 VRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVRCKVPIQVHRSLAYSDGIR 253

Query: 261 -----RIGYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKF 315
                R+    G + G   T    LD     P    +EF L++NM IA  EERY DAA +
Sbjct: 254 SVEPARMAIAAGMSDGLLFT---ELDRPDGQPCVEAQEFGLIRNMLIAAVEERYKDAATW 310

Query: 316 RDKLLKLR 323
           RDKL+ LR
Sbjct: 311 RDKLMLLR 318

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 116/197 (58%), Gaps = 8/197 (4%)

Query: 133 GPEFLR-RFQSP--TIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFV 189
            P  LR R  +P   I LK+    D LLPIIV E     LL AL +       P  +  V
Sbjct: 130 NPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIPR--PTIYNVV 187

Query: 190 KNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPG-KNEIISVDVRPSDAINVANRCEAPI 248
           K + E++GY V++VRITE V + Y+++LYL+K G + E IS+D++PSDAIN+A RC+ PI
Sbjct: 188 KEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINIAFRCKVPI 247

Query: 249 YVSKHIVLKDAIRIGYGM-GRAHGAKATYDVS-LDSAAEGPDSVTEEFDLVKNMDIAVRE 306
            V++ I   + +++       ++ +   +  + LD   + P    +EFDLV+NM +A  E
Sbjct: 248 QVNRRIAYNNGLKVVQPTPSESYVSSDQFQCTRLDRPDDQPCFEAQEFDLVRNMLVAAVE 307

Query: 307 ERYNDAAKFRDKLLKLR 323
           ERY DAA++RD+L   R
Sbjct: 308 ERYKDAAQYRDQLFMFR 324

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. indica (taxid: 39946)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1 PE=2 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 116/197 (58%), Gaps = 8/197 (4%)

Query: 133 GPEFLR-RFQSP--TIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFV 189
            P  LR R  +P   I LK+    D LLPIIV E     LL AL +       P  +  V
Sbjct: 130 NPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIPR--PTIYNVV 187

Query: 190 KNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPG-KNEIISVDVRPSDAINVANRCEAPI 248
           K + E++GY V++VRITE V + Y+++LYL+K G + E IS+D++PSDAIN+A RC+ PI
Sbjct: 188 KEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINIAFRCKVPI 247

Query: 249 YVSKHIVLKDAIRIGYGM-GRAHGAKATYDVS-LDSAAEGPDSVTEEFDLVKNMDIAVRE 306
            V++ I   + +++       ++ +   +  + LD   + P    +EFDLV+NM +A  E
Sbjct: 248 QVNRRIAYNNGLKVVQPTPSESYVSSDQFQYTRLDRPDDQPCFEAQEFDLVRNMLVAAVE 307

Query: 307 ERYNDAAKFRDKLLKLR 323
           ERY DAA++RD+L   R
Sbjct: 308 ERYKDAAQYRDQLFMFR 324

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 116/197 (58%), Gaps = 8/197 (4%)

Query: 133 GPEFLR-RFQSP--TIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFV 189
            P  LR R  +P   I LK+    D LLPIIV E     LL AL +       P  +  V
Sbjct: 130 NPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIPR--PTIYNVV 187

Query: 190 KNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPG-KNEIISVDVRPSDAINVANRCEAPI 248
           K + E++GY V++VRITE V + Y+++LYL+K G + E IS+D++PSDAIN+A RC+ PI
Sbjct: 188 KEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINIAFRCKVPI 247

Query: 249 YVSKHIVLKDAIRIGYGM-GRAHGAKATYDVS-LDSAAEGPDSVTEEFDLVKNMDIAVRE 306
            V++ I   + +++       ++ +   +  + LD   + P    +EFDLV+NM +A  E
Sbjct: 248 QVNRRIAYNNGLKVVQPTPSESYVSSDQFQYTRLDRPDDQPCFEAQEFDLVRNMLVAAVE 307

Query: 307 ERYNDAAKFRDKLLKLR 323
           ERY DAA++RD+L   R
Sbjct: 308 ERYKDAAQYRDQLFMFR 324

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza minuta (taxid: 63629)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q50604|Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 OS=Mycobacterium tuberculosis GN=Rv1829 PE=4 SV=2

 Score = 55.1 bits (131), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 127 GDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQF 186
           G+V  +G    +    P + L+   +GD  LPI +G+     +  AL   G +   P   
Sbjct: 2   GEVRVVGIRVEQPQNQPVLLLR-EANGDRYLPIWIGQSEAAAI--ALEQQGVEPPRPLTH 58

Query: 187 QFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEA 246
             +++++  LG+ +K VRI +    T++A L   +      I V  RPSD++ +A R   
Sbjct: 59  DLIRDLIAALGHSLKEVRIVDLQEGTFYADLIFDRN-----IKVSARPSDSVAIALRVGV 113

Query: 247 PIYVSKHIVLKDAIRI 262
           PIYV + ++ +  + I
Sbjct: 114 PIYVEEAVLAQAGLLI 129

Mycobacterium tuberculosis (taxid: 1773)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
255579608	306	conserved hypothetical protein [Ricinus	0.896	0.964	0.624	1e-102
296090715	237	unnamed protein product [Vitis vinifera]	0.717	0.995	0.679	2e-90
224133568	233	predicted protein [Populus trichocarpa]	0.702	0.991	0.653	4e-83
356540850	324	PREDICTED: uncharacterized protein LOC10	0.966	0.981	0.492	1e-80
357483957	326	hypothetical protein MTR_5g023110 [Medic	0.899	0.907	0.533	4e-80
30698186	340	Wound-responsive family protein [Arabido	0.750	0.726	0.602	7e-80
359497663	224	PREDICTED: uncharacterized protein LOC10	0.641	0.941	0.674	4e-79
356495340	318	PREDICTED: uncharacterized protein LOC10	0.948	0.981	0.501	2e-77
449456853	312	PREDICTED: bifunctional nuclease 2-like	0.793	0.836	0.519	2e-76
42573806	246	Wound-responsive family protein [Arabido	0.696	0.930	0.601	7e-74

>gi|255579608|ref|XP_002530645.1| conserved hypothetical protein [Ricinus communis] gi|223529818|gb|EEF31753.1| conserved hypothetical protein [Ricinus communis]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/306 (62%), Positives = 238/306 (77%), Gaps = 11/306 (3%)

Query: 35  LSASPFRLPMQLCFTSSF-------PKSVLLFCKSSRGS-FGRRFSKN-ADDHDHDFLQA 85
           +S S   L +QL F  S         KS+ + CKSS GS F    S N  DDHDHDFLQA
Sbjct: 1   MSNSSGFLSIQLGFERSLRLQCNRVKKSIFISCKSSSGSPFDDGRSTNIPDDHDHDFLQA 60

Query: 86  SLLVPETMWHHRMRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSIGPEFLRRFQSPTI 145
           SLL+ ET  H+RMR+QG++E   W+  G+  PFS   +E R D + +G EFLRRFQSPTI
Sbjct: 61  SLLISETALHYRMRRQGFQEETTWRLPGRWSPFSAMIRESRRDTSFVGYEFLRRFQSPTI 120

Query: 146 FLKISCDGDFLLPIIVGEFAVDKLLYAL--LDDGEDEDCPDQFQFVKNVVEKLGYEVKMV 203
           FLK+SCDGDFLLPIIVGEFA++KL+ AL   D  +D DCPDQFQ V+N+V++LGYEVKMV
Sbjct: 121 FLKVSCDGDFLLPIIVGEFAIEKLIDALRGGDGNDDGDCPDQFQLVRNLVDRLGYEVKMV 180

Query: 204 RITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIG 263
           RITERV NTYFA+++LSKPG+NE++S+D RPSDAIN+A+RC+API+VSK IV  DAIRI 
Sbjct: 181 RITERVANTYFARVFLSKPGENEVVSIDARPSDAINMAHRCKAPIHVSKQIVFTDAIRIS 240

Query: 264 YGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKLLKLR 323
           YGMGR H  K TYDV+LDSAA+GPDS+ EE +LV+NM+ AV+EER+NDAA +RDKL++LR
Sbjct: 241 YGMGRVHDRKPTYDVTLDSAADGPDSLAEELELVRNMNSAVKEERFNDAAMWRDKLMQLR 300

Query: 324 KSIHDH 329
           +S+HDH
Sbjct: 301 QSMHDH 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090715|emb|CBI41116.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/237 (67%), Positives = 196/237 (82%), Gaps = 1/237 (0%)

Query: 92  TMWHHRMRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISC 151
           T+ HH+MRKQG+ E  KWQS GQL PFS +TK+ R DV+SIG  FLRRFQSPTIFLK+SC
Sbjct: 1   TISHHQMRKQGFLEGNKWQSWGQLHPFSAQTKDLRADVSSIGQGFLRRFQSPTIFLKVSC 60

Query: 152 DGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVN 211
           DGDFLLPIIVGEF+V+KL+  L +D    DCP+QFQFV+++V KLGY+V MV+ITER+VN
Sbjct: 61  DGDFLLPIIVGEFSVEKLIDTLREDAI-VDCPNQFQFVRDLVGKLGYKVNMVKITERIVN 119

Query: 212 TYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHG 271
           TYFA++Y SKPG+N I SVD RPSDAINVA  C+ PIYV+K I+L DAIRI YGMGRA  
Sbjct: 120 TYFARIYFSKPGENNIQSVDARPSDAINVAKLCKVPIYVNKQIILTDAIRIIYGMGRARD 179

Query: 272 AKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKLLKLRKSIHD 328
            K+ YDV LDSAA+GPD + EE DLV+NM +A++EERYNDAA +RDKL+KLR+S H+
Sbjct: 180 TKSVYDVVLDSAADGPDLLAEELDLVRNMSLAIKEERYNDAALWRDKLMKLRESRHE 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133568|ref|XP_002327627.1| predicted protein [Populus trichocarpa] gi|222836712|gb|EEE75105.1| predicted protein [Populus trichocarpa]

 Score =  314 bits (804), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 153/234 (65%), Positives = 191/234 (81%), Gaps = 3/234 (1%)

Query: 98  MRKQGYRENMKWQSSGQLV-PFSVRT-KEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDF 155
           MRKQG++E ++W SSG+LV PF ++  KE R +   +G  FLR FQSPTIFLK+SCDGDF
Sbjct: 1   MRKQGFQEEVRWHSSGKLVFPFGLQERKEARPNTGLLGHGFLRGFQSPTIFLKVSCDGDF 60

Query: 156 LLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFA 215
           +LPIIVGEFA++KL+  +  D ++  C DQFQ V NV E+LGY+VKMVRITERV NTYFA
Sbjct: 61  VLPIIVGEFAIEKLIDGIQGD-DNAVCADQFQLVGNVAEELGYDVKMVRITERVANTYFA 119

Query: 216 KLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHGAKAT 275
           +L  SKPG+ +I+SVD RPSDAINVA+RC+APIY+SK IVL DAIRIGYG+GR   +K  
Sbjct: 120 RLCFSKPGEKDILSVDARPSDAINVASRCKAPIYISKQIVLTDAIRIGYGVGRVRNSKPI 179

Query: 276 YDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKLLKLRKSIHDH 329
           YDVSLDSAA+GPDS+ EE DLV+NM++AV+EERY DAA +RDKL++LRKS  +H
Sbjct: 180 YDVSLDSAADGPDSLVEELDLVRNMNLAVKEERYTDAAMWRDKLMELRKSRQEH 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540850|ref|XP_003538897.1| PREDICTED: uncharacterized protein LOC100816098 [Glycine max]

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 222/331 (67%), Gaps = 13/331 (3%)

Query: 3   MLSAPFCVRTVSGFHGTNKTVRTN---AGRLVSNSLSA--SPFRLPMQLCFTSSFPKSVL 57
           ML + FCVRT+SG  G+     TN     R V  S++   SP  L           +  +
Sbjct: 1   MLGSRFCVRTLSGV-GSAAADHTNVATTARSVPCSVAVDFSPLHLSPLRSRRRFRCRRSI 59

Query: 58  LFCKSSRGSFGRRFSKNADDHDHDFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQLVP 117
           L   +S        + + +++ +D+L+ASLL+ ET  H+ M K  ++   +W+SS   +P
Sbjct: 60  LISCNSSRRRSSSDNSHDNNNKNDYLEASLLLSETFSHYHMWKHRFQPEFQWKSSTPSIP 119

Query: 118 FSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDG 177
            S      R D + +   FL+RF++PTIFL+ISCDGD++LPI+VG+ A++KL+ A   + 
Sbjct: 120 LS------RTDSSLLRHGFLQRFKNPTIFLRISCDGDYILPIVVGQIAIEKLMDAE-SEQ 172

Query: 178 EDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDA 237
           E  +CPDQ+QFV+N+V +L +EV MVRITERVV+TYFA+LYLS+PGK ++ISVD RPSDA
Sbjct: 173 ESVECPDQYQFVENLVGRLDHEVIMVRITERVVSTYFARLYLSQPGKTDLISVDARPSDA 232

Query: 238 INVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLV 297
           INVANRC+APIYVSK IV  DAIRIGYGMG AH  KA YDV LDSA +GPD V +E  ++
Sbjct: 233 INVANRCKAPIYVSKEIVFTDAIRIGYGMGGAHNKKAIYDVLLDSAIDGPDLVAQELSMM 292

Query: 298 KNMDIAVREERYNDAAKFRDKLLKLRKSIHD 328
            NM  A+++ER+ DAA +RDKL  LRKS H+
Sbjct: 293 HNMHSAIKQERFKDAAIWRDKLANLRKSTHE 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483957|ref|XP_003612265.1| hypothetical protein MTR_5g023110 [Medicago truncatula] gi|355513600|gb|AES95223.1| hypothetical protein MTR_5g023110 [Medicago truncatula]

 Score =  304 bits (778), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 167/313 (53%), Positives = 226/313 (72%), Gaps = 17/313 (5%)

Query: 25  TNAG--RLVSNSLSA--SPFRLPMQLCFTSSF--PKSVLLFCKSS--RGSFGRRFSKNAD 76
           TNA   R V +SLS   SP  LP++    S F  P+S L+ C SS  R +F      + +
Sbjct: 23  TNAATSRSVPHSLSFHFSPINLPLR-SRHSRFHKPRSFLISCNSSLSRSNFS---DHHNN 78

Query: 77  DHDHDFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSIGPEF 136
           ++++DFL+AS+L+ ET+ H+ M +  ++  +  Q    ++PF   +   R D       F
Sbjct: 79  NNENDFLEASILLSETIAHYGMWRHRFQSEL--QRKSPVLPFPENSS--RRDSNLFRQGF 134

Query: 137 LRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKL 196
           L+RFQ+PTIFLKISCDGD++LPI+VG+ A++KL+ A ++  E ED PDQFQFV N+VE+L
Sbjct: 135 LQRFQNPTIFLKISCDGDYVLPIVVGKIAIEKLIDAEVEQ-EIEDWPDQFQFVNNLVERL 193

Query: 197 GYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVL 256
            +EV MVRITERVV+TYFA+LYLS+PGK++IISVD+RPSDAINVAN+C+APIYVSK IV 
Sbjct: 194 DHEVIMVRITERVVSTYFARLYLSQPGKSDIISVDLRPSDAINVANKCKAPIYVSKEIVF 253

Query: 257 KDAIRIGYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFR 316
            DAIR+GYGMGR H  KA YDV LDSA +GPDSV +E  ++ NM +A+++ER+NDAA +R
Sbjct: 254 TDAIRLGYGMGRVHNKKAIYDVLLDSAIDGPDSVAQELSMMHNMHLAIKQERFNDAATWR 313

Query: 317 DKLLKLRKSIHDH 329
           +KL  LRKS  +H
Sbjct: 314 NKLENLRKSSQEH 326

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698186|ref|NP_201406.2| Wound-responsive family protein [Arabidopsis thaliana] gi|26452559|dbj|BAC43364.1| unknown protein [Arabidopsis thaliana] gi|29824181|gb|AAP04051.1| unknown protein [Arabidopsis thaliana] gi|332010765|gb|AED98148.1| Wound-responsive family protein [Arabidopsis thaliana]

 Score =  303 bits (776), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 150/249 (60%), Positives = 189/249 (75%), Gaps = 2/249 (0%)

Query: 77  DHDHDFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSIGPEF 136
           D D +FLQAS+LV ET  H++MR+ G+R++  WQ+S  L PFS+R  E R  V  IG  F
Sbjct: 78  DPDLEFLQASVLVAETSMHYKMRRHGFRQDSMWQTSRPLPPFSIRASESRVGVLPIGLGF 137

Query: 137 LRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKL 196
           LR+F+ PTIFLKISCDGD+LLP+IVG+ AV+KLL   L  G  E+CPDQFQFV  VV+KL
Sbjct: 138 LRQFKQPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQ-GHTEECPDQFQFVSAVVDKL 196

Query: 197 GYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVL 256
           GYEVKMV++T R+VNTY+A L L KPG  E I +D RPSDAINVA  C+APIYV+K IVL
Sbjct: 197 GYEVKMVKLTGRIVNTYYASLCLGKPGDIEAICIDSRPSDAINVARACQAPIYVNKAIVL 256

Query: 257 KDAIRIGYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFR 316
           ++AI+IGYG GR   AK  ++V LDSA +GPD ++EE  LV+NMD+A +EERY DAA +R
Sbjct: 257 EEAIKIGYG-GRPQSAKPVFNVILDSAPDGPDPLSEELKLVRNMDLASKEERYIDAAMWR 315

Query: 317 DKLLKLRKS 325
           D+L  L+ S
Sbjct: 316 DRLKNLQNS 324

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497663|ref|XP_003635601.1| PREDICTED: uncharacterized protein LOC100855204 [Vitis vinifera]

 Score =  300 bits (769), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 143/212 (67%), Positives = 173/212 (81%), Gaps = 1/212 (0%)

Query: 98  MRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLL 157
           MRKQG+ E  KWQS GQL PFS +TK+ R DV+SIG  FLRRFQSPTIFLK+SCDGDFLL
Sbjct: 1   MRKQGFLEGNKWQSWGQLHPFSAQTKDLRADVSSIGQGFLRRFQSPTIFLKVSCDGDFLL 60

Query: 158 PIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKL 217
           PIIVGEF+V+KL+  L +D    DCP+QFQFV+++V KLGY+V MV+ITER+VNTYFA++
Sbjct: 61  PIIVGEFSVEKLIDTLREDAI-VDCPNQFQFVRDLVGKLGYKVNMVKITERIVNTYFARI 119

Query: 218 YLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHGAKATYD 277
           Y SKPG+N I SVD RPSDAINVA  C+ PIYV+K I+L DAIRI YGMGRA   K+ YD
Sbjct: 120 YFSKPGENNIQSVDARPSDAINVAKLCKVPIYVNKQIILTDAIRIIYGMGRARDTKSVYD 179

Query: 278 VSLDSAAEGPDSVTEEFDLVKNMDIAVREERY 309
           V LDSAA+GPD + EE DLV+NM +A++EE +
Sbjct: 180 VVLDSAADGPDLLAEELDLVRNMSLAIKEESF 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495340|ref|XP_003516536.1| PREDICTED: uncharacterized protein LOC100801243 [Glycine max]

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/331 (50%), Positives = 222/331 (67%), Gaps = 19/331 (5%)

Query: 3   MLSAPFCVRTVSGFHGTNKTVRTNAG---RLVSNSLSA--SPFRLPMQLCFTSSFPKSVL 57
           ML + FCVRTVSG  G+     TNA    R V +S++   SP      L  +    +   
Sbjct: 1   MLGSRFCVRTVSGV-GSAAADHTNAASTARSVPSSVAVDFSP------LHLSPLRSRRRR 53

Query: 58  LFCKSSRGSFGRRFSKNADDHDHDFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQLVP 117
               S   S  R  S ++ D+++D+L+ASLL+ ET  H+ M K  ++   +W+SS   +P
Sbjct: 54  SILISCDSSRRRSSSGDSHDNNNDYLEASLLLSETFSHYHMWKHRFQPEFQWKSSTPSIP 113

Query: 118 FSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDG 177
            S      R D T +   FL+RF++PTIFL+ISCDGD++LPI+VG+ A++KL+ A   + 
Sbjct: 114 LS------RTDNTLLRHGFLQRFKNPTIFLRISCDGDYILPIVVGQIAIEKLMDAE-SEH 166

Query: 178 EDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDA 237
           E  +CPDQ+QFV+N+V +L +EV MVRITERVV+TYFA+LYLS+PGK ++ISVD RPSDA
Sbjct: 167 ESVECPDQYQFVENLVGRLDHEVIMVRITERVVSTYFARLYLSQPGKTDLISVDARPSDA 226

Query: 238 INVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLV 297
           INVANRC+A IYVSK IV  DAIRIGYGMG     K  YDV LDSA +GPD V +E  ++
Sbjct: 227 INVANRCKAAIYVSKEIVFTDAIRIGYGMGGVCNKKTIYDVLLDSAVDGPDLVAQELSMM 286

Query: 298 KNMDIAVREERYNDAAKFRDKLLKLRKSIHD 328
            NM IA+++ER+ DAA +RDKL  LRKS H+
Sbjct: 287 HNMRIAIKQERFKDAAIWRDKLANLRKSAHE 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456853|ref|XP_004146163.1| PREDICTED: bifunctional nuclease 2-like [Cucumis sativus]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 144/277 (51%), Positives = 200/277 (72%), Gaps = 16/277 (5%)

Query: 53  PKSVLLFCKSSRGSFGRRFSKNADDHDH-DFLQASLLVPETMWHHRMRKQGYRENMKWQS 111
           PKS+L+ C SSR    R    + DD+ H D+ +AS LV ET++H+RM K+ ++E+  +  
Sbjct: 50  PKSILISCHSSRD---RSTHSDDDDNSHQDYFEASFLVSETIYHYRMWKKRFQEDANFNQ 106

Query: 112 SGQLVPFSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLY 171
                      +E R +  S+G  F RRF+SPT+FLKISC+GDFLLPI+VGE+A++KL+ 
Sbjct: 107 -----------RESRANSNSLGLGFFRRFRSPTVFLKISCNGDFLLPIVVGEYAIEKLID 155

Query: 172 ALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVD 231
             L   E+ + PD FQF+++++ K+GYE    RITERVVNTYFA+L+L K G++E++SVD
Sbjct: 156 CQLG-IENGEAPDIFQFIQDLIVKVGYEAITARITERVVNTYFARLFLRKEGESEMLSVD 214

Query: 232 VRPSDAINVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHGAKATYDVSLDSAAEGPDSVT 291
            RPSDA+N+A RC+ P+ VSK IV +DAIR+ YG GR H  K+ +DV LD AA+GPD ++
Sbjct: 215 ARPSDALNIAYRCKIPVLVSKQIVFEDAIRVSYGFGRVHERKSCFDVLLDCAADGPDFLS 274

Query: 292 EEFDLVKNMDIAVREERYNDAAKFRDKLLKLRKSIHD 328
           EE D++KNM IA+ EERY DAA +RDKL KLRKS+H+
Sbjct: 275 EELDMLKNMKIAIYEERYKDAAMWRDKLTKLRKSVHE 311

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573806|ref|NP_974999.1| Wound-responsive family protein [Arabidopsis thaliana] gi|332010764|gb|AED98147.1| Wound-responsive family protein [Arabidopsis thaliana]

 Score =  283 bits (725), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 139/231 (60%), Positives = 176/231 (76%), Gaps = 2/231 (0%)

Query: 95  HHRMRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGD 154
           H++MR+ G+R++  WQ+S  L PFS+R  E R  V  IG  FLR+F+ PTIFLKISCDGD
Sbjct: 2   HYKMRRHGFRQDSMWQTSRPLPPFSIRASESRVGVLPIGLGFLRQFKQPTIFLKISCDGD 61

Query: 155 FLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYF 214
           +LLP+IVG+ AV+KLL   L  G  E+CPDQFQFV  VV+KLGYEVKMV++T R+VNTY+
Sbjct: 62  YLLPVIVGDAAVEKLLDVPLQ-GHTEECPDQFQFVSAVVDKLGYEVKMVKLTGRIVNTYY 120

Query: 215 AKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHGAKA 274
           A L L KPG  E I +D RPSDAINVA  C+APIYV+K IVL++AI+IGYG GR   AK 
Sbjct: 121 ASLCLGKPGDIEAICIDSRPSDAINVARACQAPIYVNKAIVLEEAIKIGYG-GRPQSAKP 179

Query: 275 TYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKLLKLRKS 325
            ++V LDSA +GPD ++EE  LV+NMD+A +EERY DAA +RD+L  L+ S
Sbjct: 180 VFNVILDSAPDGPDPLSEELKLVRNMDLASKEERYIDAAMWRDRLKNLQNS 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
TAIR|locus:2156842	340	AT5G66050 [Arabidopsis thalian	0.896	0.867	0.535	1.3e-75
TAIR|locus:2013164	329	BBD2 "bifunctional nuclease in	0.711	0.711	0.371	8.8e-31
TAIR|locus:2018422	325	BBD1 "AT1G75380" [Arabidopsis	0.541	0.547	0.413	3.1e-28
UNIPROTKB|Q50604	164	MT1877 "Uncharacterized protei	0.389	0.780	0.279	1.1e-08

TAIR|locus:2156842 AT5G66050 [Arabidopsis thaliana (taxid:3702)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 164/306 (53%), Positives = 208/306 (67%)

Query:    24 RTNAGRLVSNSLSASPFRL--PMQLCFTSSF--PKSVLLFCKXXXXXXXXXXXKNADDHD 79
             R+ +  L S+S S S FR   P+ L    S   PK   + C                D D
Sbjct:    26 RSISASLSSSSSSPSSFRCCTPLNLKSLRSHRRPKISHICCDGSSISGS-----GLGDPD 80

Query:    80 HDFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSIGPEFLRR 139
              +FLQAS+LV ET  H++MR+ G+R++  WQ+S  L PFS+R  E R  V  IG  FLR+
Sbjct:    81 LEFLQASVLVAETSMHYKMRRHGFRQDSMWQTSRPLPPFSIRASESRVGVLPIGLGFLRQ 140

Query:   140 FQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYE 199
             F+ PTIFLKISCDGD+LLP+IVG+ AV+KLL   L  G  E+CPDQFQFV  VV+KLGYE
Sbjct:   141 FKQPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQ-GHTEECPDQFQFVSAVVDKLGYE 199

Query:   200 VKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDA 259
             VKMV++T R+VNTY+A L L KPG  E I +D RPSDAINVA  C+APIYV+K IVL++A
Sbjct:   200 VKMVKLTGRIVNTYYASLCLGKPGDIEAICIDSRPSDAINVARACQAPIYVNKAIVLEEA 259

Query:   260 IRIGYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKL 319
             I+IGYG GR   AK  ++V LDSA +GPD ++EE  LV+NMD+A +EERY DAA +RD+L
Sbjct:   260 IKIGYG-GRPQSAKPVFNVILDSAPDGPDPLSEELKLVRNMDLASKEERYIDAAMWRDRL 318

Query:   320 LKLRKS 325
               L+ S
Sbjct:   319 KNLQNS 324

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006289 "nucleotide-excision repair" evidence=IEA

TAIR|locus:2013164 BBD2 "bifunctional nuclease in basal defense response 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 95/256 (37%), Positives = 145/256 (56%)

Query:    73 KNADDHDHDFLQASLLVPETMWHHRMRKQGYRENMKWQSSGQLVPFSVRTKEPRGDVTSI 132
             +N +++D D++++S+L  E +   +    G+   MK     QL    V      G++ + 
Sbjct:    82 ENFNENDEDYVKSSVL--EAV-EVKSGPDGFMVKMK--DGRQLR--CVHNNPQGGNLPNY 134

Query:   133 GPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNV 192
              P          I LK+      LLPIIV E     LL A + + +    P  +Q VK++
Sbjct:   135 APH-------SAIVLKMEDGTGLLLPIIVLEMP-SVLLMAAMTNVQIAR-PTMYQVVKDM 185

Query:   193 VEKLGYEVKMVRITERVVNTYFAKLYLSKPG-KNEIISVDVRPSDAINVANRCEAPIYVS 251
             V+K+GYEV++VR+T RV   YFA+LYLSK G K++ +S D+RPSDAIN+A RC+ PI V+
Sbjct:   186 VDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRCKVPIQVN 245

Query:   252 KHIVLKDAIRIGYGMGRAHGAKATYDVSLDSAAEGPDSV----TEEFDLVKNMDIAVREE 307
             K++   D +R+    G+        D  L +  + P+      T+EFDLV+NM  AV EE
Sbjct:   246 KYLAYSDGMRV-IDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMMQAVDEE 304

Query:   308 RYNDAAKFRDKLLKLR 323
             RY++AA++RDKL K +
Sbjct:   305 RYDEAAEWRDKLGKFQ 320

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2018422 BBD1 "AT1G75380" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 77/186 (41%), Positives = 114/186 (61%)

Query:   143 PTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKM 202
             P I LK+      LLPIIV E     LL A + + +    P  +Q VK +V+K+GYEV++
Sbjct:   134 PAIVLKMEDGTGLLLPIIVLEMP-SVLLMAAMTNVQIAR-PTMYQVVKEMVDKMGYEVRL 191

Query:   203 VRITERVVNTYFAKLYLSKPGK-NEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIR 261
             VR+T+RV   YFA+L+LSK G  +E +S D+RPSDAIN+A RC+ PI V+K++   D +R
Sbjct:   192 VRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAVRCKIPIQVNKYLAYSDGMR 251

Query:   262 IGYGMGRAHGAKATYDVSLDSAAEGPDSV----TEEFDLVKNMDIAVREERYNDAAKFRD 317
             +    G+        D  L +  + P+      T+EF+++  M  AV EERY++AA++RD
Sbjct:   252 V-IESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSKMMQAVDEERYDEAAEWRD 310

Query:   318 KLLKLR 323
             KL + R
Sbjct:   311 KLGQFR 316

GO:0004518 "nuclease activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0031063 "regulation of histone deacetylation" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

UNIPROTKB|Q50604 MT1877 "Uncharacterized protein Rv1829/MT1877" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 38/136 (27%), Positives = 67/136 (49%)

Query:   127 GDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQF 186
             G+V  +G    +    P + L+   +GD  LPI +G+     +  AL   G +   P   
Sbjct:     2 GEVRVVGIRVEQPQNQPVLLLR-EANGDRYLPIWIGQSEAAAI--ALEQQGVEPPRPLTH 58

Query:   187 QFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEA 246
               +++++  LG+ +K VRI +    T++A L   +   N  I V  RPSD++ +A R   
Sbjct:    59 DLIRDLIAALGHSLKEVRIVDLQEGTFYADLIFDR---N--IKVSARPSDSVAIALRVGV 113

Query:   247 PIYVSKHIVLKDAIRI 262
             PIYV + ++ +  + I
Sbjct:   114 PIYVEEAVLAQAGLLI 129


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      329       318   0.00083  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  222 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.23u 0.10s 23.33t   Elapsed:  00:00:01
  Total cpu time:  23.23u 0.10s 23.33t   Elapsed:  00:00:01
  Start:  Sat May 11 07:32:37 2013   End:  Sat May 11 07:32:38 2013

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00012369001 SubName- Full=Chromosome chr4 scaffold_373, whole genome shotgun sequence; (231 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
pfam02577	132	pfam02577, DNase-RNase, Bifunctional nuclease	3e-31
COG1259	151	COG1259, COG1259, Uncharacterized conserved protei	2e-18
pfam02151	36	pfam02151, UVR, UvrB/uvrC motif	3e-04

>gnl|CDD|217117 pfam02577, DNase-RNase, Bifunctional nuclease

 Score =  113 bits (286), Expect = 3e-31
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 6/124 (4%)

Query: 141 QSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEV 200
            +P + L+   DG+ +LPI +G      +  AL  +G +   P     +K+V+E LG +V
Sbjct: 13  GAPVVLLRDE-DGERVLPIWIGPAEAQAIALAL--EGVEPPRPLTHDLLKDVLEALGAKV 69

Query: 201 KMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAI 260
           + V I +    T++A+L L   G+ EI   D RPSDAI +A R  APIYV++ ++ +  I
Sbjct: 70  ERVVIDDLKDGTFYARLVLRDGGEEEI---DARPSDAIALALRTGAPIYVTEEVLEEAGI 126

Query: 261 RIGY 264
            +  
Sbjct: 127 PLDD 130

This family is a bifunctional nuclease, with both DNase and RNase activity. It forms a wedge-shaped dimer, with each monomer being triangular in shape. A large groove at the thick end of the wedge contains a possible active site. Length = 132

>gnl|CDD|224179 COG1259, COG1259, Uncharacterized conserved protein [Function unknown]

 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 4/138 (2%)

Query: 128 DVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQ 187
           +V  +G  F+     PT+ L +    + +LPI +G  A + L  A   +G +   P    
Sbjct: 5   EVEVVGIFFVPVSSFPTVVLLLEGGDNRVLPIYIG--ASEALAIAKALEGVEPPRPLTHD 62

Query: 188 FVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAP 247
            +  + E+LG  V+ V I + + NTY+A L L +      I +D RPSDAI +A R  AP
Sbjct: 63  LLVEIFEELGARVEKVVIDDLIDNTYYATLILEQDDG--KIQIDARPSDAIALALRVGAP 120

Query: 248 IYVSKHIVLKDAIRIGYG 265
           IYV++ ++ +  I I   
Sbjct: 121 IYVAEEVLDEAEIEIEDE 138

Length = 151

>gnl|CDD|145355 pfam02151, UVR, UvrB/uvrC motif

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 295 DLVKNMDIAVREERYNDAAKFRDKLLKLRK 324
           +L + M+ A  EE +  AAK RD++  L K
Sbjct: 6   ELEEEMEEAAEEEDFEKAAKLRDQIKALEK 35

Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
PF02577	135	DNase-RNase: Bifunctional nuclease; InterPro: IPR0	100.0
COG1259	151	Uncharacterized conserved protein [Function unknow	100.0
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	98.36
COG3880	176	Modulator of heat shock repressor CtsR, McsA [Sign	98.09
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	95.54
PRK05298	652	excinuclease ABC subunit B; Provisional	94.77
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	94.7
PRK07883	557	hypothetical protein; Validated	94.24
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	94.22
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	93.39
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	93.34
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	92.96
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	92.89
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	92.85
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	92.81
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	92.79
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	92.72
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	92.55
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	90.94

>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function

Probab=100.00  E-value=3.5e-36  Score=258.03  Aligned_cols=131  Identities=34%  Similarity=0.521  Sum_probs=111.0

Q ss_pred             eeeccceeccCCCCcEEEEEeecCCcEEEEEEECHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHhCCeEeEEEEEee
Q 020211          129 VTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITER  208 (329)
Q Consensus       129 v~~~g~g~l~~~~~pvIvLk~e~~g~r~LPI~IG~~EA~aI~~al~~~g~~~~RPlTHDLl~~vle~lg~~v~~V~I~~l  208 (329)
                      +++.|+.+.++.++|+++|++ +++++.||||||..||.+|+.++.  |.+++||+|||||.++++++|.++++|+|+++
T Consensus         1 ~~v~gi~~~~~~~~~vvlL~~-~~~~~~lpI~i~~~ea~~i~~~~~--~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~   77 (135)
T PF02577_consen    1 MEVKGISVDEPSGQPVVLLRE-EDGDRVLPIWIGAFEAQAIALALE--GEKPPRPLTHDLLSDLLEALGAEVERVVIDDL   77 (135)
T ss_dssp             -EEEEEEEETTTTEEEEEEEE-TTSSEEEEEE--HHHHHHHHHHHC--T---SS--HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CEEEEEEEcCCCCceEEEEEE-cCCCEEEEEEECHHHHHHHHHHHc--CCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEE
Confidence            357899999999999999997 789999999999999999999986  79999999999999999999999999999999


Q ss_pred             eCCEEEEEEEEecCCcceEEEEeCChHHHHHHHHHcCCCeEEeHhhhhhcceeccC
Q 020211          209 VVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGY  264 (329)
Q Consensus       209 ~dGvFyA~L~l~~~ge~~~~~IDaRPSDAIaLAlR~~~PIyV~eeVl~~agI~i~~  264 (329)
                      +||+|||+|++.+++  +...+|+||||||+||+|+++||||+++|++++++++..
T Consensus        78 ~dg~f~A~L~l~~~~--~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~~~  131 (135)
T PF02577_consen   78 EDGVFYARLVLRQGG--EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPVEE  131 (135)
T ss_dssp             ETTEEEEEEEEEETT--TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE--H
T ss_pred             ECCEEEEEEEEecCC--EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCCch
Confidence            999999999999766  579999999999999999999999999999999999863

The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.

>COG1259 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.3e-34  Score=251.58  Aligned_cols=135  Identities=32%  Similarity=0.453  Sum_probs=122.5

Q ss_pred             cceeeccceeccCCCCcEEEEEeecCCcEEEEEEECHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHhCCeEeEEEEE
Q 020211          127 GDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRIT  206 (329)
Q Consensus       127 ~~v~~~g~g~l~~~~~pvIvLk~e~~g~r~LPI~IG~~EA~aI~~al~~~g~~~~RPlTHDLl~~vle~lg~~v~~V~I~  206 (329)
                      ..++++|+.+.+....|++++..+.+.++.||||||..||.+|+.++.  +..++||+||||+.++++.++.++.+|+|+
T Consensus         4 ~e~~~~~i~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~--~~~p~RP~tHdll~~i~~~l~~~v~kVvI~   81 (151)
T COG1259           4 IEVEVVGIFFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALE--GVEPPRPLTHDLLVEIFEELGARVEKVVID   81 (151)
T ss_pred             ccceEeEEEEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhCCcEEEEEEE
Confidence            346689999999999996665555677789999999999999999975  799999999999999999999999999999


Q ss_pred             eeeCCEEEEEEEEecCCcceEEEEeCChHHHHHHHHHcCCCeEEeHhhhhhcceeccCC
Q 020211          207 ERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGYG  265 (329)
Q Consensus       207 ~l~dGvFyA~L~l~~~ge~~~~~IDaRPSDAIaLAlR~~~PIyV~eeVl~~agI~i~~~  265 (329)
                      +++||||||+|++++++  ....+||||||||+||+|.++||||.|+|+++++++...+
T Consensus        82 d~~d~tyyA~L~~~~~~--~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~~~~  138 (151)
T COG1259          82 DLIDNTYYATLILEQDD--GKIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEIEDE  138 (151)
T ss_pred             EeccCeEEEEEEEEcCC--ceEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcCccc
Confidence            99999999999999876  4589999999999999999999999999999998877643

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=98.36  E-value=5.9e-07  Score=61.31  Aligned_cols=32  Identities=34%  Similarity=0.601  Sum_probs=28.4

Q ss_pred             hH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhh
Q 020211          294 FD-LVKNMDIAVREERYNDAAKFRDKLLKLRKS  325 (329)
Q Consensus       294 l~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~  325 (329)
                      +. |...|..|+++++||+||.|||+|..|+++
T Consensus         4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q   36 (36)
T PF02151_consen    4 IKELEEKMEEAVENEDFEKAARLRDQIKALKKQ   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence            44 889999999999999999999999999864

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]

Probab=98.09  E-value=3.1e-06  Score=76.08  Aligned_cols=38  Identities=18%  Similarity=0.291  Sum_probs=34.2

Q ss_pred             chhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhcc
Q 020211          290 VTEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSIH  327 (329)
Q Consensus       290 ~~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~~  327 (329)
                      .++++. |++.|+++|+.|+||+||.+||||+.|+.+.+
T Consensus       134 ~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~~  172 (176)
T COG3880         134 PKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKNG  172 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            367777 99999999999999999999999999997644

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=95.54  E-value=0.014  Score=61.27  Aligned_cols=36  Identities=25%  Similarity=0.495  Sum_probs=31.9

Q ss_pred             hhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhc
Q 020211          291 TEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSI  326 (329)
Q Consensus       291 ~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~  326 (329)
                      ...++ |+++|.+|.++-+||+||++||+|++|+++.
T Consensus       623 ~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~  659 (663)
T COG0556         623 EKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEEL  659 (663)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            34555 8999999999999999999999999999764

>PRK05298 excinuclease ABC subunit B; Provisional

Probab=94.77  E-value=0.029  Score=59.77  Aligned_cols=35  Identities=26%  Similarity=0.508  Sum_probs=31.0

Q ss_pred             hhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhc
Q 020211          292 EEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSI  326 (329)
Q Consensus       292 ~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~  326 (329)
                      ..++ |+++|++|.++.+||+||++||+|+.|++.+
T Consensus       613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~  648 (652)
T PRK05298        613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEEL  648 (652)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            3444 9999999999999999999999999998654

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=94.70  E-value=0.026  Score=60.41  Aligned_cols=28  Identities=39%  Similarity=0.694  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLR  323 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~  323 (329)
                      |+++|++|.++.+||+||++||+|+.|+
T Consensus       628 l~~~M~~aa~~l~FE~Aa~~RD~i~~L~  655 (655)
T TIGR00631       628 LEKEMKQAARNLEFEEAARLRDEILELK  655 (655)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            8999999999999999999999999875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>PRK07883 hypothetical protein; Validated

Probab=94.24  E-value=0.048  Score=57.27  Aligned_cols=29  Identities=34%  Similarity=0.581  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLRK  324 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~  324 (329)
                      |++.|+.|.++.+||+||++||+|..++.
T Consensus       411 l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~  439 (557)
T PRK07883        411 LRARIDRLAAAERFEEAARLRDRLAALLR  439 (557)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999974

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=94.22  E-value=0.048  Score=57.87  Aligned_cols=30  Identities=30%  Similarity=0.546  Sum_probs=28.2

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHhh
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLRKS  325 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~  325 (329)
                      |++.|+.|.++.+||+||++||+|..+++-
T Consensus       207 L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~  236 (598)
T PRK00558        207 LEEKMEEASENLEFERAARYRDQIQALRRV  236 (598)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999753

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=93.39  E-value=0.083  Score=55.31  Aligned_cols=29  Identities=17%  Similarity=0.371  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLRK  324 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~  324 (329)
                      |++.|+.|.++.+||+||++||.|..++.
T Consensus       197 L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~  225 (519)
T PRK12306        197 LEEEMAEKAKNQQFERALVIRDEINAIEN  225 (519)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999974

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=93.34  E-value=0.087  Score=56.91  Aligned_cols=29  Identities=24%  Similarity=0.408  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLRK  324 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~  324 (329)
                      |++.|++|.++.+||+||++||+|+.++.
T Consensus       206 L~~~M~~AAe~l~FE~AA~lRD~i~aL~~  234 (694)
T PRK14666        206 LRTEMEAASEALEFERAAVLRDQIRAVER  234 (694)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999974

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=92.96  E-value=0.11  Score=55.00  Aligned_cols=29  Identities=24%  Similarity=0.401  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLRK  324 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~  324 (329)
                      |.+.|+.|.++.+||+||++||.|..++.
T Consensus       204 L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~  232 (567)
T PRK14667        204 LYDKIEEYSQKLMFEKAAVIRDQILALEN  232 (567)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999874

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=92.89  E-value=0.11  Score=56.01  Aligned_cols=29  Identities=41%  Similarity=0.607  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLRK  324 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~  324 (329)
                      |.+.|+.|.++.+||+||++||+|+.++.
T Consensus       210 L~~~M~~AA~~l~FE~AA~lRD~i~aL~~  238 (691)
T PRK14672        210 LEKRMKRAVRQEAFEAAARIRDDIQAIRC  238 (691)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999973

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=92.85  E-value=0.11  Score=55.00  Aligned_cols=29  Identities=28%  Similarity=0.536  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLRK  324 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~  324 (329)
                      |.+.|+.|.++.+||+||++||+|+.++.
T Consensus       199 L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~  227 (574)
T TIGR00194       199 LEQKMEKASENLEFEEAARIRDQIAAVRE  227 (574)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999974

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=92.81  E-value=0.12  Score=54.83  Aligned_cols=29  Identities=21%  Similarity=0.344  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLRK  324 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~  324 (329)
                      |.+.|+.|.++.+||+||++||+|..++.
T Consensus       182 L~~~M~~aa~~l~FE~Aa~~RD~i~al~~  210 (574)
T PRK14670        182 IEIKMKEAIQKEDFEAAIKLKETKRSLIE  210 (574)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999974

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=92.79  E-value=0.11  Score=54.96  Aligned_cols=29  Identities=28%  Similarity=0.528  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLRK  324 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~  324 (329)
                      |++.|+.|.++.+||+||++||+|+.++.
T Consensus       204 l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~  232 (577)
T PRK14668        204 LRREMEAAAQAQEFERAANLRDRLEAVEA  232 (577)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999974

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=92.72  E-value=0.12  Score=55.16  Aligned_cols=29  Identities=28%  Similarity=0.568  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLRK  324 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~  324 (329)
                      |.+.|+.|.++.+||+||++||.|..++.
T Consensus       220 L~~~M~~as~~l~FE~Aa~~RD~i~~l~~  248 (621)
T PRK14671        220 LTEEMQRAAAELKFEEAAELKDQIESLKR  248 (621)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999973

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=92.55  E-value=0.13  Score=54.95  Aligned_cols=29  Identities=31%  Similarity=0.448  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLRK  324 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~  324 (329)
                      |.+.|+.|.++.+||+||++||+|+.++.
T Consensus       208 L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~  236 (624)
T PRK14669        208 LRARMEAAALEMQFELAAKYRDLITTVEE  236 (624)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999874

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=90.94  E-value=0.25  Score=52.52  Aligned_cols=29  Identities=31%  Similarity=0.484  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211          296 LVKNMDIAVREERYNDAAKFRDKLLKLRK  324 (329)
Q Consensus       296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~  324 (329)
                      |++.|++|.++.+||.||++||.|+.++.
T Consensus       207 L~~~M~~As~~l~FE~Aa~~RD~i~al~~  235 (581)
T COG0322         207 LEEKMEEASENLDFERAARLRDQIKALEK  235 (581)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	329
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	4e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A Length = 164

 Score = 92.9 bits (230), Expect = 4e-23
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 10/129 (7%)

Query: 141 QSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEV 200
            +P + L I    + +LPI +G      L  A+  +  +   P     + +V+E L   V
Sbjct: 28  NTPVVILGIE-GTNRVLPIWIGACEGHALALAM--EKMEFPRPLTHDLLLSVLESLEARV 84

Query: 201 KMVRITERVVNTYFAKLYLSKP-------GKNEIISVDVRPSDAINVANRCEAPIYVSKH 253
             V I     NT++A L +           +  +I +D RPSDAI +A +  API+VS +
Sbjct: 85  DKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDN 144

Query: 254 IVLKDAIRI 262
           +V K +I +
Sbjct: 145 LVEKHSIEL 153

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 8e-08
 Identities = 48/335 (14%), Positives = 110/335 (32%), Gaps = 105/335 (31%)

Query: 30  LVSNSLSASPFRLPMQLCFTSSFPKSVLLFCKSSRGSFGR--RFSKNADDHDHDFLQASL 87
           L+   L   P  LP ++  T+  P+ + +  +S R        +     D     +++SL
Sbjct: 306 LLLKYLDCRPQDLPREVLTTN--PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 88  --LVPETMWHHRMRKQGY------RENMK---------WQSS---------GQLVPFSVR 121
             L P         ++ +        +           W             +L  +S+ 
Sbjct: 364 NVLEPAEY------RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 122 TKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLL---YALLDDGE 178
            K+P+    SI          P+I+L++    +        E+A+ + +   Y +    +
Sbjct: 418 EKQPKESTISI----------PSIYLELKVKLE-------NEYALHRSIVDHYNIPKTFD 460

Query: 179 DEDCPDQ------FQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLS-KPGKNEIISVD 231
            +D          +         +G+ +K +   ER+  T F  ++L  +  + +I    
Sbjct: 461 SDDLIPPYLDQYFYSH-------IGHHLKNIEHPERM--TLFRMVFLDFRFLEQKIRHDS 511

Query: 232 V---RPSDAINVANRCEAPIYVSKHIVLKDAIRIGYGMGRAHGAKATYDVSLDSAAE--- 285
                    +N   + +   Y   +I   D                 Y+  +++  +   
Sbjct: 512 TAWNASGSILNTLQQLK--FY-KPYICDND---------------PKYERLVNAILDFLP 553

Query: 286 --GPDSVTEEF-DLVKNMDIAVREER---YNDAAK 314
               + +  ++ DL++   IA+  E    + +A K
Sbjct: 554 KIEENLICSKYTDLLR---IALMAEDEAIFEEAHK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	100.0
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	97.89
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	96.15
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	95.66

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A

Probab=100.00  E-value=2.3e-39  Score=286.07  Aligned_cols=133  Identities=29%  Similarity=0.370  Sum_probs=121.7

Q ss_pred             eeeccceeccCCCCcEEEEEeecCCcEEEEEEECHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHhCCeEeEEEEEee
Q 020211          129 VTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITER  208 (329)
Q Consensus       129 v~~~g~g~l~~~~~pvIvLk~e~~g~r~LPI~IG~~EA~aI~~al~~~g~~~~RPlTHDLl~~vle~lg~~v~~V~I~~l  208 (329)
                      +...|+.+.+.+++|+|||++ ++++|.||||||.+||++|+.++.  |.+++||+|||||.++++++|+++.+|+|+++
T Consensus        16 ~~v~gi~ld~~~~~pvvvL~~-~~g~r~LPI~Ig~~EA~aI~~~l~--~~~~~RPlThDLl~~il~~lg~~v~~V~I~~l   92 (164)
T 1vjl_A           16 AWVKTLALDRVSNTPVVILGI-EGTNRVLPIWIGACEGHALALAME--KMEFPRPLTHDLLLSVLESLEARVDKVIIHSL   92 (164)
T ss_dssp             EEEEEEEECTTTCCEEEEEEE-TTSSEEEEEECCHHHHHHHHHHHH--TCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEEEEEcCCCCceEEEEEe-cCCCEEEEEEECHHHHHHHHHHhc--CCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEe
Confidence            338899999999999999997 789999999999999999999997  79999999999999999999999999999999


Q ss_pred             eCCEEEEEEEEe------cCC-cceEEEEeCChHHHHHHHHHcCCCeEEeHhhhhhcceeccC
Q 020211          209 VVNTYFAKLYLS------KPG-KNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGY  264 (329)
Q Consensus       209 ~dGvFyA~L~l~------~~g-e~~~~~IDaRPSDAIaLAlR~~~PIyV~eeVl~~agI~i~~  264 (329)
                      +||+|||+|+++      ++| +.+.+++|+||||||+||+|+++||||+++|++++|+++..
T Consensus        93 ~dgtfyA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~~a~i~~~~  155 (164)
T 1vjl_A           93 KDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV  155 (164)
T ss_dssp             ETTEEEEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECCH
T ss_pred             ECCEEEEEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHhhcCCCCcc
Confidence            999999999999      654 12568999999999999999999999999999999998863

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*

Probab=96.15  E-value=0.0022  Score=66.27  Aligned_cols=34  Identities=26%  Similarity=0.446  Sum_probs=25.5

Q ss_pred             hhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhh
Q 020211          292 EEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKS  325 (329)
Q Consensus       292 ~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~  325 (329)
                      +.+. |+++|++|.++++||+||+|||+|+.|+++
T Consensus       626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~  660 (661)
T 2d7d_A          626 KVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE  660 (661)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence            3445 999999999999999999999999999764

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*

Probab=95.66  E-value=0.0019  Score=66.86  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=0.0

Q ss_pred             hhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhc
Q 020211          291 TEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSI  326 (329)
Q Consensus       291 ~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~  326 (329)
                      .+.++ |+++|++|+++++||+||+|||+|+.|++++
T Consensus       610 ~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~  646 (664)
T 1c4o_A          610 RERIAELELAMWQAAEALDFERAARLRDEIRALEARL  646 (664)
T ss_dssp             -------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            44566 8899999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	329
d1vjla_	151	d.257.1.1 (A:) Hypothetical protein TM0160 {Thermo	1e-26

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

 Score =  100 bits (251), Expect = 1e-26
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 10/129 (7%)

Query: 141 QSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEV 200
            +P + L I    + +LPI +G      L  A+  +  +   P     + +V+E L   V
Sbjct: 17  NTPVVILGIE-GTNRVLPIWIGACEGHALALAM--EKMEFPRPLTHDLLLSVLESLEARV 73

Query: 201 KMVRITERVVNTYFAKLYLSKP-------GKNEIISVDVRPSDAINVANRCEAPIYVSKH 253
             V I     NT++A L +           +  +I +D RPSDAI +A +  API+VS +
Sbjct: 74  DKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDN 133

Query: 254 IVLKDAIRI 262
           +V K +I +
Sbjct: 134 LVEKHSIEL 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	329
d1vjla_	151	Hypothetical protein TM0160 {Thermotoga maritima [	100.0
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	98.0

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3e-38  Score=273.31  Aligned_cols=132  Identities=29%  Similarity=0.366  Sum_probs=121.8

Q ss_pred             eeeccceeccCCCCcEEEEEeecCCcEEEEEEECHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHhCCeEeEEEEEee
Q 020211          129 VTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITER  208 (329)
Q Consensus       129 v~~~g~g~l~~~~~pvIvLk~e~~g~r~LPI~IG~~EA~aI~~al~~~g~~~~RPlTHDLl~~vle~lg~~v~~V~I~~l  208 (329)
                      +...|+++.+..++|+|+|++ +++++.||||||..||++|+.++.  |.+++||+|||||.++++++|+++.+|+|+++
T Consensus         5 ~~v~~i~~~~~~~~pvvlL~~-~~~~~~LPI~Ig~~EA~~I~~~l~--~~~~~RP~thDLl~~~l~~lg~~v~~V~I~~~   81 (151)
T d1vjla_           5 AWVKTLALDRVSNTPVVILGI-EGTNRVLPIWIGACEGHALALAME--KMEFPRPLTHDLLLSVLESLEARVDKVIIHSL   81 (151)
T ss_dssp             EEEEEEEECTTTCCEEEEEEE-TTSSEEEEEECCHHHHHHHHHHHH--TCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEEEEEecCCCCcEEEEEE-CCCCeEEEEEEChHHHHHHHHHHc--CCCCCCCCHHHHHHHHHHHhCCEEEEEEEEEE
Confidence            457788999989999999997 789999999999999999999997  79999999999999999999999999999999


Q ss_pred             eCCEEEEEEEEecCC-------cceEEEEeCChHHHHHHHHHcCCCeEEeHhhhhhcceecc
Q 020211          209 VVNTYFAKLYLSKPG-------KNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIG  263 (329)
Q Consensus       209 ~dGvFyA~L~l~~~g-------e~~~~~IDaRPSDAIaLAlR~~~PIyV~eeVl~~agI~i~  263 (329)
                      ++|+|||+|++.++.       +++.+.+||||||||+||+|+++||||+++|++++|+.+.
T Consensus        82 ~dg~fyA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlr~~~PI~v~~~Vl~~a~i~~~  143 (151)
T d1vjla_          82 KDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELE  143 (151)
T ss_dssp             ETTEEEEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECC
T ss_pred             ecCCeEEEEEEecCcccccccccCceeEeccChhHHHHHHHhhCCCEEEcHHHHHhcCCCCC
Confidence            999999999997532       1256899999999999999999999999999999998765

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.4e-06  Score=62.50  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             hhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhc
Q 020211          291 TEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSI  326 (329)
Q Consensus       291 ~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~  326 (329)
                      .+.++ |+++|..|.++.+||+||++||+|+.+++..
T Consensus        16 ~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l   52 (56)
T d1e52a_          16 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF   52 (56)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            45566 9999999999999999999999999998753