Citrus Sinensis ID: 020234

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
cccccEEccEEEEccccccccEEEEEEEEEccccEEEEEccccccccccccccEEEEccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEcccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHccHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHcc
ccccccEEEEEEEEcccccccEEEEEEEEEccccEEEEEccccEEccccHHHHEEEEccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEcccEEEEEEEEEcccccccccHHHHHHccccccccccccHHHHHHHHHHHcccccEEEEEEcccccEEEEEccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcccHHEccccEEEEcccccHHHHHHHHHHHcccccccHHcccHHHHHHHHHHHHHHHHHHcc
mggckgpittfivepfvphnqEYYLSIVSdrlgctisfsecggieieenwDKVKTIflptekhmtldacapliatlplefrgkigDFIMGVFAVFqdldfsfiemnpftlvngepypldmrgelddTAAFKNFKkwaniefplpfgrvlsstESFIHSldektsaslkftvlnpkgrIWTMVAGGGASVIYADtvgdlgyaselgnyaeysgapneEEVLQYARVVIDCatadpdgrKRALLIgggianftdVATTFNGIIRALREKESKLKAARMHIFvrrggpnyqTGLAKMRALGEelgiplevygpeatmtGICKQAIDCIMSAS
MGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSEcggieieenwDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSldektsaslkFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIgggianftdvATTFNGIIRALREKESKLKAARMHIfvrrggpnyqTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
MGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
*****GPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM***
**GCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLS**************ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS**
MGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
****KGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
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MGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query329 2.2.26 [Sep-21-2011]
Q2QZ86423 ATP-citrate synthase alph yes no 1.0 0.777 0.920 0.0
O80526424 ATP-citrate synthase alph yes no 0.990 0.768 0.914 1e-180
Q2QNG7423 ATP-citrate synthase alph no no 1.0 0.777 0.902 1e-180
Q9SGY2423 ATP-citrate synthase alph no no 1.0 0.777 0.835 1e-168
O22718423 ATP-citrate synthase alph no no 1.0 0.777 0.826 1e-167
Q53JY8407 ATP-citrate synthase subu no no 0.948 0.766 0.851 1e-164
Q91V92 1091 ATP-citrate synthase OS=M yes no 0.978 0.295 0.446 1e-75
P53585 1106 Probable ATP-citrate synt yes no 0.966 0.287 0.444 1e-75
P16638 1100 ATP-citrate synthase OS=R yes no 0.969 0.29 0.444 4e-75
Q2TCH3 1101 ATP-citrate synthase OS=O N/A no 0.972 0.290 0.440 2e-74
>sp|Q2QZ86|ACLA2_ORYSJ ATP-citrate synthase alpha chain protein 2 OS=Oryza sativa subsp. japonica GN=ACLA-2 PE=2 SV=2 Back     alignment and function desciption
 Score =  637 bits (1643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/329 (92%), Positives = 316/329 (96%)

Query: 1   MGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPT 60
           MGGCK PITTFIVEPFVPH+QEYYLSIVS+RLG TISFSECGGIEIEENWDKVKTIFLPT
Sbjct: 95  MGGCKAPITTFIVEPFVPHDQEYYLSIVSERLGSTISFSECGGIEIEENWDKVKTIFLPT 154

Query: 61  EKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDM 120
           EK MT DACAPLIATLPLE RGKIGDFI GVFAVFQDLDFSF+EMNPFT+VNGEPYPLDM
Sbjct: 155 EKPMTPDACAPLIATLPLEARGKIGDFIKGVFAVFQDLDFSFLEMNPFTIVNGEPYPLDM 214

Query: 121 RGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWT 180
           RGELDDTAAFKNFKKW NIEFPLPFGRVLSSTE FIH LDEKTSASLKFTVLNPKGRIWT
Sbjct: 215 RGELDDTAAFKNFKKWGNIEFPLPFGRVLSSTEGFIHDLDEKTSASLKFTVLNPKGRIWT 274

Query: 181 MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRA 240
           MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVV+DCATADPDGRKRA
Sbjct: 275 MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVLDCATADPDGRKRA 334

Query: 241 LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEE 300
           LLIGGGIANFTDV  TF+GIIRALREKESKLKAARMHI+VRRGGPNYQTGLAKMR LG E
Sbjct: 335 LLIGGGIANFTDVGATFSGIIRALREKESKLKAARMHIYVRRGGPNYQTGLAKMRKLGAE 394

Query: 301 LGIPLEVYGPEATMTGICKQAIDCIMSAS 329
           LG+P+EVYGPEATMTGICKQAI+C+M+A+
Sbjct: 395 LGVPIEVYGPEATMTGICKQAIECVMAAA 423
ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 8
>sp|O80526|ACLA3_ARATH ATP-citrate synthase alpha chain protein 3 OS=Arabidopsis thaliana GN=ACLA-3 PE=2 SV=1 Back     alignment and function description
>sp|Q2QNG7|ACLA3_ORYSJ ATP-citrate synthase alpha chain protein 3 OS=Oryza sativa subsp. japonica GN=ACLA-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SGY2|ACLA1_ARATH ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana GN=ACLA-1 PE=1 SV=1 Back     alignment and function description
>sp|O22718|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana GN=ACLA-2 PE=2 SV=1 Back     alignment and function description
>sp|Q53JY8|ACLA1_ORYSJ ATP-citrate synthase subunit alpha chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLA-1 PE=3 SV=2 Back     alignment and function description
>sp|Q91V92|ACLY_MOUSE ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|P53585|ACLY_CAEEL Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1 PE=2 SV=1 Back     alignment and function description
>sp|P16638|ACLY_RAT ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|Q2TCH3|ACLY_SHEEP ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
378405606423 ATP-citrate synthase [Camellia sinensis] 1.0 0.777 0.948 0.0
449435576423 PREDICTED: ATP-citrate synthase alpha ch 1.0 0.777 0.939 0.0
255543008423 ATP-citrate synthase, putative [Ricinus 1.0 0.777 0.942 0.0
224124562423 predicted protein [Populus trichocarpa] 1.0 0.777 0.927 0.0
224124954423 predicted protein [Populus trichocarpa] 1.0 0.777 0.927 0.0
225450474423 PREDICTED: ATP-citrate synthase alpha ch 1.0 0.777 0.924 1e-180
147775765423 hypothetical protein VITISV_017316 [Viti 1.0 0.777 0.927 1e-180
297843736424 ATP-citrate lyase A-3 [Arabidopsis lyrat 0.990 0.768 0.923 1e-180
122248711423 RecName: Full=ATP-citrate synthase alpha 1.0 0.777 0.920 1e-180
359487578 435 PREDICTED: ATP-citrate synthase alpha ch 1.0 0.756 0.924 1e-180
>gi|378405606|gb|AFB82642.1| ATP-citrate synthase [Camellia sinensis] Back     alignment and taxonomy information
 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/329 (94%), Positives = 322/329 (97%)

Query: 1   MGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPT 60
           MGGCK PITTFIVEPFVPH+QEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTI LPT
Sbjct: 95  MGGCKAPITTFIVEPFVPHDQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTISLPT 154

Query: 61  EKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDM 120
           EK MTL+ACAPLIATLPLE RGKIGDFI+GVFAVFQDLDFSF+EMNPFTLVNGEPYPLDM
Sbjct: 155 EKPMTLEACAPLIATLPLEVRGKIGDFILGVFAVFQDLDFSFLEMNPFTLVNGEPYPLDM 214

Query: 121 RGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWT 180
           RGELDDTAAFKNFKKW +IEFPLPFGRVLS TESFIHSLDEKTSASLKFTVLNPKGRIWT
Sbjct: 215 RGELDDTAAFKNFKKWGDIEFPLPFGRVLSPTESFIHSLDEKTSASLKFTVLNPKGRIWT 274

Query: 181 MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRA 240
           MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE+EVLQYARVVIDCATADPDGRKRA
Sbjct: 275 MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEDEVLQYARVVIDCATADPDGRKRA 334

Query: 241 LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEE 300
           LLIGGGIANFTDVA TFNGIIRALREKESKLKA+RMHI+VRRGGPNYQTGLAKMRALGEE
Sbjct: 335 LLIGGGIANFTDVAATFNGIIRALREKESKLKASRMHIYVRRGGPNYQTGLAKMRALGEE 394

Query: 301 LGIPLEVYGPEATMTGICKQAIDCIMSAS 329
           LG+PLEVYGPEATMTGICKQAIDCIMSA+
Sbjct: 395 LGVPLEVYGPEATMTGICKQAIDCIMSAA 423

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449435576|ref|XP_004135571.1| PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Cucumis sativus] gi|449508610|ref|XP_004163361.1| PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255543008|ref|XP_002512567.1| ATP-citrate synthase, putative [Ricinus communis] gi|223548528|gb|EEF50019.1| ATP-citrate synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224124562|ref|XP_002330054.1| predicted protein [Populus trichocarpa] gi|222871479|gb|EEF08610.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124954|ref|XP_002319466.1| predicted protein [Populus trichocarpa] gi|222857842|gb|EEE95389.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225450474|ref|XP_002280514.1| PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform 1 [Vitis vinifera] gi|296089834|emb|CBI39653.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147775765|emb|CAN64797.1| hypothetical protein VITISV_017316 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297843736|ref|XP_002889749.1| ATP-citrate lyase A-3 [Arabidopsis lyrata subsp. lyrata] gi|297335591|gb|EFH66008.1| ATP-citrate lyase A-3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|122248711|sp|Q2QZ86.2|ACLA2_ORYSJ RecName: Full=ATP-citrate synthase alpha chain protein 2; Short=ATP-citrate synthase A-2; AltName: Full=ATP-citrate lyase A-2; AltName: Full=Citrate cleavage enzyme A-2 gi|108864675|gb|ABA95548.2| ATP-citrate synthase, putative, expressed [Oryza sativa Japonica Group] gi|218186206|gb|EEC68633.1| hypothetical protein OsI_37024 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|359487578|ref|XP_003633614.1| PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
TAIR|locus:2012310424 ACLA-3 "ATP-citrate lyase A-3" 0.990 0.768 0.914 6.3e-163
TAIR|locus:2025865423 ACLA-2 "ATP-citrate lyase A-2" 1.0 0.777 0.826 2e-152
DICTYBASE|DDB_G0278341450 DDB_G0278341 "putative ATP cit 0.984 0.72 0.566 6.8e-95
FB|FBgn0020236 1112 ATPCL "ATP citrate lyase" [Dro 0.972 0.287 0.468 4.3e-72
ASPGD|ASPL0000045833485 aclA [Emericella nidulans (tax 0.553 0.375 0.566 2e-71
MGI|MGI:103251 1091 Acly "ATP citrate lyase" [Mus 0.978 0.295 0.446 1.3e-70
UNIPROTKB|G3V9G4 1091 Acly "ATP citrate lyase, isofo 0.972 0.293 0.443 1.7e-70
UNIPROTKB|G3V888 1101 Acly "ATP citrate lyase, isofo 0.972 0.290 0.443 1.8e-70
UNIPROTKB|F1S0N2524 ACLY "Uncharacterized protein" 0.978 0.614 0.433 2.1e-70
UNIPROTKB|J9NST7 1091 ACLY "Uncharacterized protein" 0.972 0.293 0.443 2.1e-70
TAIR|locus:2012310 ACLA-3 "ATP-citrate lyase A-3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1586 (563.4 bits), Expect = 6.3e-163, P = 6.3e-163
 Identities = 298/326 (91%), Positives = 313/326 (96%)

Query:     1 MGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPT 60
             M GCK PITTFIVEPFVPH+QEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLP 
Sbjct:    95 MEGCKAPITTFIVEPFVPHDQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPA 154

Query:    61 EKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDM 120
             EK MTL+ CAPLIATLPLE R KIG+FIMG FAVFQDLDFSF+EMNPFTLV+GEP+PLDM
Sbjct:   155 EKSMTLEVCAPLIATLPLEVRAKIGNFIMGAFAVFQDLDFSFMEMNPFTLVDGEPFPLDM 214

Query:   121 RGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWT 180
             RGELDDTAAFKNF KW +IEFPLPFGRVLSSTE+FIH LDEKTSASLKFTVLNPKGRIWT
Sbjct:   215 RGELDDTAAFKNFNKWGDIEFPLPFGRVLSSTENFIHGLDEKTSASLKFTVLNPKGRIWT 274

Query:   181 MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRA 240
             MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCAT DPDGRKRA
Sbjct:   275 MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATTDPDGRKRA 334

Query:   241 LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEE 300
             LLIGGGIANFTDVA TFNGIIRALREKE++LKA+RMHI+VRRGGPNYQTGLA+MRALGEE
Sbjct:   335 LLIGGGIANFTDVAATFNGIIRALREKETRLKASRMHIYVRRGGPNYQTGLARMRALGEE 394

Query:   301 LGIPLEVYGPEATMTGICKQAIDCIM 326
             LG+PLEVYGPEATMTGICK+AIDCIM
Sbjct:   395 LGVPLEVYGPEATMTGICKRAIDCIM 420
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016874 "ligase activity" evidence=IEA
GO:0003878 "ATP citrate synthase activity" evidence=ISS
GO:0006085 "acetyl-CoA biosynthetic process" evidence=TAS
GO:0009346 "citrate lyase complex" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=RCA
TAIR|locus:2025865 ACLA-2 "ATP-citrate lyase A-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278341 DDB_G0278341 "putative ATP citrate synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0020236 ATPCL "ATP citrate lyase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000045833 aclA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
MGI|MGI:103251 Acly "ATP citrate lyase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9G4 Acly "ATP citrate lyase, isoform CRA_b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V888 Acly "ATP citrate lyase, isoform CRA_a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1S0N2 ACLY "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9NST7 ACLY "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2QZ86ACLA2_ORYSJ2, ., 3, ., 3, ., 80.92091.00.7777yesno
O80526ACLA3_ARATH2, ., 3, ., 3, ., 80.91410.99080.7688yesno
Q2QNG7ACLA3_ORYSJ2, ., 3, ., 3, ., 80.90271.00.7777nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_1310041
ATP citrate (pro-S)-lyase (EC-2.3.3.8) (424 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIX.2128.1
hypothetical protein (435 aa)
     •  0.899
gw1.XIV.3318.1
aconitate hydratase 1 (EC-4.2.1.3) (897 aa)
     •  0.899
gw1.97.147.1
dihydrolipoamide acetyltransferase (448 aa)
     •  0.899
gw1.8105.3.1
annotation not avaliable (106 aa)
     •  0.899
gw1.4745.2.1
annotation not avaliable (67 aa)
     •  0.899
grail3.0001073802
SubName- Full=Putative uncharacterized protein; (354 aa)
     •  0.899
fgenesh4_pm.C_LG_I001100
malate dehydrogenase (EC-1.1.1.37) (356 aa)
     •  0.899
fgenesh4_pg.C_scaffold_155000049
malate dehydrogenase (EC-1.1.1.37) (412 aa)
     •  0.899
fgenesh4_pg.C_LG_III000191
SubName- Full=Putative uncharacterized protein; (512 aa)
     •  0.899
eugene3.01810009
aconitate hydratase 1 (EC-4.2.1.3) (899 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
PLN02235423 PLN02235, PLN02235, ATP citrate (pro-S)-lyase 0.0
COG0045387 COG0045, SucC, Succinyl-CoA synthetase, beta subun 4e-36
TIGR01016386 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be 3e-15
PRK00696388 PRK00696, sucC, succinyl-CoA synthetase subunit be 3e-09
pfam08442202 pfam08442, ATP-grasp_2, ATP-grasp domain 1e-07
PRK14046392 PRK14046, PRK14046, malate--CoA ligase subunit bet 2e-04
>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase Back     alignment and domain information 
 Score =  726 bits (1875), Expect = 0.0
 Identities = 299/329 (90%), Positives = 315/329 (95%)

Query: 1   MGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPT 60
           MGGCKGPITTFIVEPFVPH+QE+YLSIVSDRLGC+ISFSECGGIEIEENWDKVKTIFLPT
Sbjct: 95  MGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPT 154

Query: 61  EKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDM 120
           E  +T + CAPLIATLPLE RGKI +FI GVFAVFQDLDF+F+EMNPFTLV+GEPYPLDM
Sbjct: 155 EAPLTSEICAPLIATLPLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDM 214

Query: 121 RGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWT 180
           RGELDDTAAFKNFKKW NIEFPLPFGRV+S TESFIH LDEKTSASLKFTVLNPKGRIWT
Sbjct: 215 RGELDDTAAFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWT 274

Query: 181 MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRA 240
           MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATA+PDGRKRA
Sbjct: 275 MVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGRKRA 334

Query: 241 LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEE 300
           LLIGGGIANFTDVA TFNGIIRALREKESKLKAARMHIFVRRGGPNYQ GLAKMRALGEE
Sbjct: 335 LLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLAKMRALGEE 394

Query: 301 LGIPLEVYGPEATMTGICKQAIDCIMSAS 329
           +G+P+EVYGPEATMTGICKQAID I +A+
Sbjct: 395 IGVPIEVYGPEATMTGICKQAIDYITAAA 423

Length = 423
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain Back     alignment and domain information
>gnl|CDD|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 329
PLN02235423 ATP citrate (pro-S)-lyase 100.0
COG0045387 SucC Succinyl-CoA synthetase, beta subunit [Energy 100.0
PLN00124422 succinyl-CoA ligase [GDP-forming] subunit beta; Pr 100.0
PRK14046392 malate--CoA ligase subunit beta; Provisional 100.0
KOG1447412 consensus GTP-specific succinyl-CoA synthetase, be 100.0
TIGR01016386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 100.0
KOG2799434 consensus Succinyl-CoA synthetase, beta subunit [E 100.0
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 100.0
PF08442202 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 99.95
KOG1254 600 consensus ATP-citrate lyase [Energy production and 99.89
PF00549153 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e 99.77
TIGR02717447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 99.64
PF13549222 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. 99.37
COG1042 598 Acyl-CoA synthetase (NDP forming) [Energy producti 99.2
PLN02522 608 ATP citrate (pro-S)-lyase 97.55
PTZ00187317 succinyl-CoA synthetase alpha subunit; Provisional 97.41
PF13607138 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin 97.29
COG0074293 SucD Succinyl-CoA synthetase, alpha subunit [Energ 97.25
PRK06091 555 membrane protein FdrA; Validated 97.17
TIGR02717 447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 96.84
PLN00125300 Succinyl-CoA ligase [GDP-forming] subunit alpha 96.77
TIGR01019286 sucCoAalpha succinyl-CoA synthetase, alpha subunit 96.58
PRK05678291 succinyl-CoA synthetase subunit alpha; Validated 96.12
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 94.01
KOG1255329 consensus Succinyl-CoA synthetase, alpha subunit [ 93.44
PRK02261137 methylaspartate mutase subunit S; Provisional 93.31
PF02601 319 Exonuc_VII_L: Exonuclease VII, large subunit; Inte 90.17
cd02071122 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin 89.97
PRK06091555 membrane protein FdrA; Validated 89.46
cd02072128 Glm_B12_BD B12 binding domain of glutamate mutase 88.29
COG0616 317 SppA Periplasmic serine proteases (ClpP class) [Po 86.7
PRK10949 618 protease 4; Provisional 85.62
COG1042598 Acyl-CoA synthetase (NDP forming) [Energy producti 85.58
cd07014177 S49_SppA Signal peptide peptidase A. Signal peptid 85.36
cd00578 452 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase 85.32
TIGR01501134 MthylAspMutase methylaspartate mutase, S subunit. 84.41
COG2185143 Sbm Methylmalonyl-CoA mutase, C-terminal domain/su 83.19
COG0075 383 Serine-pyruvate aminotransferase/archaeal aspartat 82.69
TIGR00705 584 SppA_67K signal peptide peptidase SppA, 67K type. 82.06
cd07019211 S49_SppA_1 Signal peptide peptidase A (SppA), a se 81.59
cd07018222 S49_SppA_67K_type Signal peptide peptidase A (SppA 80.64
>PLN02235 ATP citrate (pro-S)-lyase Back     alignment and domain information 
Probab=100.00  E-value=4.4e-88  Score=660.99  Aligned_cols=324  Identities=92%  Similarity=1.465  Sum_probs=301.1

Q ss_pred             CCcceeecEEEEeecCCCCceEEEEEEEeCCCCeEEEeccCCCccccccccceeeecCCCcCCCHHHHHHHHhcCChhHH
Q 020234            2 GGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFR   81 (329)
Q Consensus         2 ~~~~~~v~~vlVee~~~~~~E~Ylsi~~Dr~~~~ii~S~~GGvdIE~~~d~i~k~~i~p~~gl~~~~~~~l~~~l~~~~~   81 (329)
                      ++.+|+|++|||||+++|.+||||||++||+++.|++|++||||||+.|+++.|++|||..++++++++.++.+++.+..
T Consensus        96 ~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~S~~GGvdIEe~pe~i~k~~Id~~~gl~~~~~~~~~~~l~~~~~  175 (423)
T PLN02235         96 GGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEAPLTSEICAPLIATLPLEIR  175 (423)
T ss_pred             cCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEEECCCCCcccCChhHeEEEEcCCCCCCCHHHHHHHHHhCCHHHH
Confidence            35677999999999999999999999999998889999999999999999999999999999999999999999998889


Q ss_pred             HHHHHHHHHHHHHhhhcCcceeeeeceeccCCceEEeeceeecCccccccccccccccccCCCCCCCCCcccccccccch
Q 020234           82 GKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDE  161 (329)
Q Consensus        82 ~~~~~il~~L~~~f~e~d~~llEINPL~~~~g~~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e  161 (329)
                      +++.+++.+||++|.++||+++|||||++.+|+++|||+|++|||||+|||++.|..++||.||+|+.+|+|.++.++|+
T Consensus       176 ~~~~~~l~~Ly~~F~~~D~tllEINPLv~~dg~~~alDaK~~~DDnA~fR~~~~~~~~~f~~~fgr~~~~~E~~~~~~d~  255 (423)
T PLN02235        176 GKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDE  255 (423)
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEEecceEeeCCCEEEEEeEEcccCCCcccCHhHhhhhcccccccCCCCHHHHhhccchh
Confidence            99999999999999999999999999999889999999999999999999999898899999999999999998887776


Q ss_pred             hhhccCCceEecCCCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEEE
Q 020234          162 KTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRAL  241 (329)
Q Consensus       162 ~~a~~~~l~yv~l~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vlv  241 (329)
                      .+..++.+++|+|+||||||+||||++|+|||+|+++|.+|+||||+|+||+|+.++++++++++|++|++||+++++||
T Consensus       256 a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a~~iil~~~~~~~~vk~ilv  335 (423)
T PLN02235        256 KTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGRKRAL  335 (423)
T ss_pred             hhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEE
Confidence            55555333339999999999999999999999999974339999999999999999999999999999999999999999


Q ss_pred             EeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHHH
Q 020234          242 LIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA  321 (329)
Q Consensus       242 ~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~~  321 (329)
                      ||||||+|||+||+||+||++|++++..++++.++||||||+|||+++|+++|+++++++|+|+++|++..||++||+++
T Consensus       336 nIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~~il~e~~~~~gl~i~~~~~~~~m~~a~~~a  415 (423)
T PLN02235        336 LIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQA  415 (423)
T ss_pred             EEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHHHHHHHHHhHHhcCCcEEEeCCCCCHHHHHHHH
Confidence            99999999999999999999999998644444679999999999999999999987777899999999899999999999


Q ss_pred             HHHh
Q 020234          322 IDCI  325 (329)
Q Consensus       322 v~~~  325 (329)
                      |+..
T Consensus       416 v~~~  419 (423)
T PLN02235        416 IDYI  419 (423)
T ss_pred             Hhhh
Confidence            9754

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion] Back     alignment and domain information
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional Back     alignment and domain information
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A Back     alignment and domain information
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PRK06091 membrane protein FdrA; Validated Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha Back     alignment and domain information
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit Back     alignment and domain information
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PRK02261 methylaspartate mutase subunit S; Provisional Back     alignment and domain information
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 Back     alignment and domain information
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain Back     alignment and domain information
>PRK06091 membrane protein FdrA; Validated Back     alignment and domain information
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) Back     alignment and domain information
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10949 protease 4; Provisional Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>cd07014 S49_SppA Signal peptide peptidase A Back     alignment and domain information
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins Back     alignment and domain information
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit Back     alignment and domain information
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] Back     alignment and domain information
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type Back     alignment and domain information
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
3mwe_A425 Truncated Human Atp-Citrate Lyase With Tartrate Bou 1e-75
3pff_A 829 Truncated Human Atp-Citrate Lyase With Adp And Tart 2e-75
3mwd_A425 Truncated Human Atp-Citrate Lyase With Citrate Boun 3e-73
1scu_B388 The Crystal Structure Of Succinyl-Coa Synthetase Fr 4e-06
1cqi_B385 Crystal Structure Of The Complex Of Adp And Mg2+ Wi 4e-06
1jll_B388 Crystal Structure Analysis Of The E197betaa Mutant 2e-05
1euc_B396 Crystal Structure Of Dephosphorylated Pig Heart, Gt 3e-05
1eud_B396 Crystal Structure Of Phosphorylated Pig Heart, Gtp- 3e-05
2fp4_B395 Crystal Structure Of Pig Gtp-Specific Succinyl-Coa 3e-05
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 425 Back     alignment and structure 
Iteration: 1

 Score =  279 bits (714), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 144/327 (44%), Positives = 208/327 (63%), Gaps = 7/327 (2%)
Query: 1   MGGCKGPITTFIVEPFVPHNQ--EYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFL 58
           +G   G +  F++EPFVPH+Q  E+Y+ I + R G  + F   GG+++ +   K + + +
Sbjct: 95  VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLV 154
Query: 59  PTEKHMT-LDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYP 117
             ++ +   D    L+   P + +  +  FI G+F  ++DL F+++E+NP  +     Y 
Sbjct: 155 GVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYV 214
Query: 118 LDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGR 177
           LD+  ++D TA +    KW +IEFP PFGR     E++I  LD K+ ASLK T+LNPKGR
Sbjct: 215 LDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGR 274
Query: 178 IWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PD 235
           IWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E++   YA+ ++   T +  PD
Sbjct: 275 IWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPD 334
Query: 236 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 295
           G  + L+IGG IANFT+VA TF GI+RA+R+ +  LK   + IFVRRGGPNYQ GL  M 
Sbjct: 335 G--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMG 392
Query: 296 ALGEELGIPLEVYGPEATMTGICKQAI 322
            +G+  GIP+ V+G E  MT I   A+
Sbjct: 393 EVGKTTGIPIHVFGTETHMTAIVGMAL 419
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829 Back     alignment and structure
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 425 Back     alignment and structure
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From Escherichia Coli At 2.5 Angstroms Resolution Length = 388 Back     alignment and structure
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 385 Back     alignment and structure
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E. Coli Scs Length = 388 Back     alignment and structure
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 395 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 1e-162
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 1e-137
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 2e-08
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 2e-08
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 Back     alignment and structure
 Score =  473 bits (1219), Expect = e-162
 Identities = 141/332 (42%), Positives = 206/332 (62%), Gaps = 3/332 (0%)

Query: 1   MGGCKGPITTFIVEPFVPHNQ--EYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFL 58
           +G   G +  F++EPFVPH+Q  E+Y+ I + R G  + F   GG+++ +   K + + +
Sbjct: 95  VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLV 154

Query: 59  PTEKHMTL-DACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYP 117
             ++ +   D    L+   P + +  +  FI G+F  ++DL F+++E+NP  +     Y 
Sbjct: 155 GVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYV 214

Query: 118 LDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGR 177
           LD+  ++D TA +    KW +IEFP PFGR     E++I  LD K+ ASLK T+LNPKGR
Sbjct: 215 LDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGR 274

Query: 178 IWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGR 237
           IWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E++   YA+ ++   T +    
Sbjct: 275 IWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPD 334

Query: 238 KRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRAL 297
            + L+IGG IANFT+VA TF GI+RA+R+ +  LK   + IFVRRGGPNYQ GL  M  +
Sbjct: 335 GKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEV 394

Query: 298 GEELGIPLEVYGPEATMTGICKQAIDCIMSAS 329
           G+  GIP+ V+G E  MT I   A+      +
Sbjct: 395 GKTTGIPIHVFGTETHMTAIVGMALGHRPIPN 426
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425 Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397 Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395 Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 100.0
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 100.0
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 100.0
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 100.0
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 100.0
2csu_A457 457AA long hypothetical protein; structural genomi 99.87
1wr2_A238 Hypothetical protein PH1789; structural genomics, 99.73
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 99.31
3mwd_B334 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 97.46
2fp4_A305 Succinyl-COA ligase [GDP-forming] alpha-chain, mit 97.19
3dmy_A 480 Protein FDRA; predicted actyl-COA synthetase, nysg 97.08
1oi7_A288 Succinyl-COA synthetase alpha chain; SCS, ligase, 97.05
2yv2_A297 Succinyl-COA synthetase alpha chain; COA-binding d 96.96
2yv1_A294 Succinyl-COA ligase [ADP-forming] subunit alpha; C 96.86
2nu8_A288 Succinyl-COA ligase [ADP-forming] subunit alpha; c 96.62
3pff_A829 ATP-citrate synthase; phosphohistidine, organic ac 96.24
2csu_A 457 457AA long hypothetical protein; structural genomi 95.8
2yxb_A161 Coenzyme B12-dependent mutase; alpha/beta, structu 86.83
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 83.21
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure
Probab=100.00  E-value=8.4e-82  Score=623.26  Aligned_cols=318  Identities=43%  Similarity=0.808  Sum_probs=292.9

Q ss_pred             cceeecEEEEeecCCC--CceEEEEEEEeCCCCeEEEeccCCCccccccccceeeecCCCcCCCHHHH-HHHHhcCChhH
Q 020234            4 CKGPITTFIVEPFVPH--NQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDAC-APLIATLPLEF   80 (329)
Q Consensus         4 ~~~~v~~vlVee~~~~--~~E~Ylsi~~Dr~~~~ii~S~~GGvdIE~~~d~i~k~~i~p~~gl~~~~~-~~l~~~l~~~~   80 (329)
                      ..++|++|+||+|+++  .+|||+|+++||.+|+|+||++|||+||+++++..++++||..+++.+++ ++++.+++..+
T Consensus        98 ~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s~~GGv~IE~vad~~~~~~i~~~~~l~~~~~~~~ll~g~~~~d  177 (425)
T 3mwd_A           98 ATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDK  177 (425)
T ss_dssp             EEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCSHHHHSEEEEEETTCCCCHHHHHHTTTTTSCTTT
T ss_pred             CCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEECCCCccHhHhhcccceEecCCccccCHHHHHHHHHcCCcHHH
Confidence            4578999999999986  59999999999999999999999999999998887889999889998887 66777787788


Q ss_pred             HHHHHHHHHHHHHHhhhcCcceeeeeceeccCCceEEeeceeecCccccccccccccccccCCCCCCCCCcccccccccc
Q 020234           81 RGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLD  160 (329)
Q Consensus        81 ~~~~~~il~~L~~~f~e~d~~llEINPL~~~~g~~~alDaki~iDdnA~fR~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  160 (329)
                      +++++++|.+||++|+++|++++|||||++..++++|+|||++|||||+||||+.|..+++|++|.++.+|+|.++.++|
T Consensus       178 ~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~gv~AlDAki~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~  257 (425)
T 3mwd_A          178 KEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLD  257 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTEEEECCEEEEEEGGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCceEEEeceeecccchhhhChhhhhhhhccccccccCChhhhhhhhhh
Confidence            99999999999999999999999999999933349999999999999999999889888988889999999999998888


Q ss_pred             hhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHHhccCCCC--CCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCE
Q 020234          161 EKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRK  238 (329)
Q Consensus       161 e~~a~~~~l~yv~l~g~I~ii~NG~Glam~t~D~l~~~g~gg--~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~  238 (329)
                      ++++++++||||+|+||||||+||||++|+|||+|.++  ||  +||||+|+||+|++++++++++.+++++++||++|+
T Consensus       258 a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~--Gg~~~pANflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~  335 (425)
T 3mwd_A          258 AKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG  335 (425)
T ss_dssp             HTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TCGGGBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTC
T ss_pred             hhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHc--CCCcCCcceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence            89999999999999999999999999999999999996  88  799999999999999999987777777777999999


Q ss_pred             EEEEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHH
Q 020234          239 RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGIC  318 (329)
Q Consensus       239 vlv~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av  318 (329)
                      +||||||||++||+||+||+||++|+++..++....++||||||+|||+++|+++|+++.+++|+|+++||++.+|+++|
T Consensus       336 i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn~~eg~~il~~~g~~lgip~~~~gpe~~~~~i~  415 (425)
T 3mwd_A          336 KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIV  415 (425)
T ss_dssp             EEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHTCCEEEECTTSCTTHHH
T ss_pred             EEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcCCHHHHHHHHHhCCcccCCceEEeCccchHHHHH
Confidence            99999999999999999999999999997432222579999999999999999999999888899999999999999999


Q ss_pred             HHHHH
Q 020234          319 KQAID  323 (329)
Q Consensus       319 ~~~v~  323 (329)
                      ++|+.
T Consensus       416 ~~a~~  420 (425)
T 3mwd_A          416 GMALG  420 (425)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            99874
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Back     alignment and structure
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Back     alignment and structure
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Back     alignment and structure
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 329
d2nu7b1150 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta 2e-12
d1eucb2246 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta- 1e-06
d2nu7b2238 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta- 7e-06
d1eucb1148 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta 3e-05
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 150 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 21/147 (14%)

Query: 176 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPD 235
           G I  MV G G ++   D V   G   E  N+ +  G   +E V +  +++     +D  
Sbjct: 19  GNIGCMVNGAGLAMGTMDIVKLHG--GEPANFLDVGGGATKERVTEAFKII----LSDDK 72

Query: 236 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 295
            +    ++              +GII A+ E    +      + VR  G N + G  K+ 
Sbjct: 73  VKA---VLVNIFGGIVRCDLIADGIIGAVAEVGVNVP-----VVVRLEGNNAELGAKKLA 124

Query: 296 ALGEELGIPLEVYGPEATMTGICKQAI 322
               + G+ +        +T   +Q +
Sbjct: 125 ----DSGLNII---AAKGLTDAAQQVV 144
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 Back     information, alignment and structure
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238 Back     information, alignment and structure
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 148 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
d1eucb1148 Succinyl-CoA synthetase, beta-chain, C-terminal do 100.0
d2nu7b1150 Succinyl-CoA synthetase, beta-chain, C-terminal do 100.0
d2nu7b2238 Succinyl-CoA synthetase, beta-chain, N-terminal do 99.95
d1eucb2246 Succinyl-CoA synthetase, beta-chain, N-terminal do 99.89
d2csua3163 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 99.73
d2csua2161 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 97.68
d1oi7a2167 Succinyl-CoA synthetase, alpha-chain, C-terminal d 97.29
d1euca2176 Succinyl-CoA synthetase, alpha-chain, C-terminal d 96.28
d2nu7a2166 Succinyl-CoA synthetase, alpha-chain, C-terminal d 95.53
d7reqa2168 Methylmalonyl-CoA mutase alpha subunit, C-terminal 91.02
d1ccwa_137 Glutamate mutase, small subunit {Clostridium cochl 85.96
d1xrsb1160 D-lysine 5,6-aminomutase beta subunit KamE, C-term 84.16
d1f74a_ 293 N-acetylneuraminate lyase {Haemophilus influenzae 80.11
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=8.7e-47  Score=319.72  Aligned_cols=144  Identities=25%  Similarity=0.383  Sum_probs=137.2

Q ss_pred             hhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHhcccccCCCCCEEE
Q 020234          161 EKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRA  240 (329)
Q Consensus       161 e~~a~~~~l~yv~l~g~I~ii~NG~Glam~t~D~l~~~g~gg~paN~lDlgG~a~~e~~~~a~~ill~~~~~~~~v~~vl  240 (329)
                      |.+|++++++||+|+|+||||+||||++|+|||++.++  ||+||||+|+||+|+.+++++|++++++    ||+||+||
T Consensus         4 E~~a~~~~l~yv~LdG~IG~i~NGAGlaMaTmD~i~~~--Gg~pANFlDiGGga~~e~v~~al~iil~----d~~Vk~Il   77 (148)
T d1eucb1           4 ENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLN--GGKPANFLDLGGGVKESQVYQAFKLLTA----DPKVEAIL   77 (148)
T ss_dssp             HHHHHHTTCEEEECSCSEEEEESSHHHHHHHHHHHHHT--TCCBSEEEECCSSCCHHHHHHHHHHTTS----CTTCCEEE
T ss_pred             hHHHHHcCCcEEEecCcEEEEecCCccchhHHHHHHHc--CCCeeeEEecCCCCCHHHHHHHHHHHHC----CCCccEEE
Confidence            45688999999999999999999999999999999996  9999999999999999999999999999    99999999


Q ss_pred             EEeccccCchHHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHHhccccCCceeecCCCCCHHHHHHH
Q 020234          241 LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQ  320 (329)
Q Consensus       241 v~i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ar~~l~~~~~~~gip~~~~g~~~~~~~av~~  320 (329)
                      ||+||||++|++||   +||++|+++..     .++|+|+||.|||+++||++|+++    |+|+++   ++||++|+++
T Consensus        78 INIfGGI~rcD~vA---~GIv~A~~e~~-----~~iPiVVRL~Gtn~eeg~~iL~~s----gl~i~~---~~~l~eAa~~  142 (148)
T d1eucb1          78 VNIFGGIVNCAIIA---NGITKACRELE-----LKVPLVVRLEGTNVHEAQNILTNS----GLPITS---AVDLEDAAKK  142 (148)
T ss_dssp             EEEECSSSCHHHHH---HHHHHHHHHHT-----CCSCEEEEEESTTHHHHHHHHHTT----CSSEEE---CSSHHHHHHH
T ss_pred             EEeeEeehhHHHHH---HHHHHHHHhcC-----CCccEEEEeccCChHHHHHHHHHC----CCCeEE---eCCHHHHHHH
Confidence            99999999999999   99999999986     579999999999999999999998    999886   6899999999


Q ss_pred             HHHHh
Q 020234          321 AIDCI  325 (329)
Q Consensus       321 ~v~~~  325 (329)
                      +|+.+
T Consensus       143 aV~~~  147 (148)
T d1eucb1         143 AVASV  147 (148)
T ss_dssp             HHHTC
T ss_pred             HHHhc
Confidence            99864
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Back     information, alignment and structure
>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]} Back     information, alignment and structure
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure