Citrus Sinensis ID: 020278

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWDSSNTESELSKKHEDLLGGSKEICGWASFPPVPIKQGYPQSSPSNGAHPITPTKTEQGSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVSDFKRATPSQSSDVLERARAAIASAERASAAARTAAELVNVKFGSWKLEEGKSS
Secondary Structure (PSIPRED)
cccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHccccHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcEccccEEcccccc
Coil and Loop (DISEMBL)
MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARvpilesqkecpTEMREAVASIIFAaprcsdlpdllQIKNLFSAKYGKEFVLAVSelrpdssvnrTIIEKLSVSAPSSEARLKVLKEIAQEhnlnwdssnteselSKKHedllggskeicgwasfppvpikqgypqsspsngahpitptkteqgsqrlqapnppssmpllsnneieqsvkssnvvpvsdfkratpsqssDVLERARAAIASAERASAAARTAAELVNVKFgswkleegkss
Flexible Loop (DISEMBL)
MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVselrpdssvnrTIIEklsvsapsseaRLKVLKEIAQehnlnwdssntesELSKKHEDLLGGSKEICGWASFPPVPIKQGYPQSSPSNGAHPITPTKTEQGSQRLQAPNPPSSMPLLSNNEIEQSVKssnvvpvsdfkratpsqssdvLERARAAIASAERASAAARTAAELVNVkfgswkleegkss
Low Complexity Region (SEG)
MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWDSSNTESELSKKHEDLLGGSKEICGWASFPPVPIKQGYPQSSPSNGAHPITPTKTEQGSQRLQApnppssmpllsnnEIEQSVKSSNVVPVSDFKRATPSQSSDVLeraraaiasaerasaaartaaeLVNVKFGSWKLEEGKSS
Disordered region (IsUnstruct)
****NQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELR********II************************************************KEICGWASFPP************************************************************************************************ELVNVKFGSW********
Disordered Region (DISOPRED)
*******FNRGVFGAKCKTSLTLGISRMKL****************AQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW********************************************************************************************************************************LVNVKFG***L******
Disordered Region (DISEMBL)
MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW*************EDLLGGSKEICGWASFPPVPIKQGYPQSSPSNGAHPITP**************PPSSMPLLSNNEIEQSVKSSNVVPVSDFK*****************************TAAELVNVKFGSW********
Disordered Region (DISPRO)
*SLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWDSSNTESE***********************************************************************************************************************EL*NVKFGSWKL******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWDSSNTESELSKKHEDLLGGSKEICGWASFPPVPIKQGYPQSSPSNGAHPITPTKTEQGSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVSDFKRATPSQSSDVxxxxxxxxxxxxxxxxxxxxxAELVNVKFGSWKLEEGKSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
Q3ZBV1	364	IST1 homolog OS=Bos tauru	yes	no	0.539	0.486	0.374	2e-26
P53990	364	IST1 homolog OS=Homo sapi	yes	no	0.533	0.480	0.370	5e-26
Q9CX00	362	IST1 homolog OS=Mus muscu	yes	no	0.539	0.488	0.374	7e-26
Q568Z6	366	IST1 homolog OS=Rattus no	yes	no	0.539	0.483	0.374	7e-26
Q5R6G8	364	IST1 homolog OS=Pongo abe	yes	no	0.533	0.480	0.364	4e-25
Q54I39	369	IST1-like protein OS=Dict	yes	no	0.518	0.460	0.331	1e-23
P53843	298	Vacuolar protein sorting-	yes	no	0.515	0.567	0.318	1e-14

>sp|Q3ZBV1|IST1_BOVIN IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 111/179 (62%), Gaps = 2/179 (1%)

Query: 7   LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
           +   G+   + + +L L I+R+KLL+ K+    Q+ RKEIA +L AG++  ARIRVEH+I
Sbjct: 1   MLGSGIKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query: 67  REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
           RE  +  A  +LEL+C+ LLAR  +++S KE  + + E+V+++I+AAPR  S++ +L  +
Sbjct: 61  REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120

Query: 126 KNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
            +   AKY KE+   +       +VN  ++ KLSV AP      + L EIA+ +N+ ++
Sbjct: 121 ADQLCAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178

Proposed to be involved in specific functions of the ESCRT machinery. Is required for efficient abscission during cytokinesis, but not for HIV-1 budding. The involvment in the MVB pathway is not established. Involved in recruiting VPS4A and/or VPS4B to the midbody of dividing cells.
Bos taurus (taxid: 9913)

>sp|P53990|IST1_HUMAN IST1 homolog OS=Homo sapiens GN=IST1 PE=1 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 113/181 (62%), Gaps = 6/181 (3%)

Query: 7   LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
           +   G    + + +L L I+R+KLL+ K+    Q+ RKEIA +L AG++  ARIRVEH+I
Sbjct: 1   MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query: 67  REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
           RE  +  A  +LEL+C+ LLAR  +++S KE  + + E+V+++I+AAPR  S++ +L  +
Sbjct: 61  REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120

Query: 126 KNLFSAKYGKEF--VLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW 183
            +   AKY KE+  +   +++    +VN  ++ KLSV AP      + L EIA+ +N+ +
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQI---GTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPY 177

Query: 184 D 184
           +
Sbjct: 178 E 178

Proposed to be involved in specific functions of the ESCRT machinery. Is required for efficient abscission during cytokinesis, but not for HIV-1 budding. The involvment in the MVB pathway is not established. Involved in recruiting VPS4A and/or VPS4B to the midbody of dividing cells.

Homo sapiens (taxid: 9606)

>sp|Q9CX00|IST1_MOUSE IST1 homolog OS=Mus musculus GN=Ist1 PE=2 SV=1

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 110/179 (61%), Gaps = 2/179 (1%)

Query: 7   LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
           +   G    + + +L L I+R+KLL+ K+    Q+ RKEIA +L AG++  ARIRVEH+I
Sbjct: 1   MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query: 67  REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
           RE  +  A  +LEL+C+ LLAR  +++S KE  + + E+V+++I+AAPR  S++ +L  +
Sbjct: 61  REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120

Query: 126 KNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
            +   AKY KE+   +       +VN  ++ KLSV AP      + L EIA+ +N+ ++
Sbjct: 121 ADQLCAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178

Proposed to be involved in specific functions of the ESCRT machinery. Is required for efficient abscission during cytokinesis, but not for HIV-1 budding. The involvment in the MVB pathway is not established. Involved in recruiting VPS4A and/or VPS4B to the midbody of dividing cells.

Mus musculus (taxid: 10090)

>sp|Q568Z6|IST1_RAT IST1 homolog OS=Rattus norvegicus GN=Ist1 PE=2 SV=1

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 110/179 (61%), Gaps = 2/179 (1%)

Query: 7   LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
           +   G    + + +L L I+R+KLL+ K+    Q+ RKEIA +L AG++  ARIRVEH+I
Sbjct: 1   MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query: 67  REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
           RE  +  A  +LEL+C+ LLAR  +++S KE  + + E+V+++I+AAPR  S++ +L  +
Sbjct: 61  REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120

Query: 126 KNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
            +   AKY KE+   +       +VN  ++ KLSV AP      + L EIA+ +N+ ++
Sbjct: 121 ADQLCAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178

Proposed to be involved in specific functions of the ESCRT machinery. Is required for efficient abscission during cytokinesis, but not for HIV-1 budding. The involvment in the MVB pathway is not established. Involved in recruiting VPS4A and/or VPS4B to the midbody of dividing cells.

Rattus norvegicus (taxid: 10116)

>sp|Q5R6G8|IST1_PONAB IST1 homolog OS=Pongo abelii GN=IST1 PE=2 SV=1

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 112/181 (61%), Gaps = 6/181 (3%)

Query: 7   LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
           +   G    + + +L L I+R+KLL+ K+    Q+ RKEIA +L AG++  ARIRVEH+I
Sbjct: 1   MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query: 67  REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
           RE  +  A  +LEL+C+ LLAR  +++S KE  + + E+V+++I+AAPR  S++ +L  +
Sbjct: 61  REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120

Query: 126 KNLFSAKYGKEF--VLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW 183
            +   AKY K +  +   +++    +VN  ++ KLSV AP      + L EIA+ +N+ +
Sbjct: 121 ADQLCAKYSKGYGKLCRTNQI---GTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPY 177

Query: 184 D 184
           +
Sbjct: 178 E 178

Proposed to be involved in specific functions of the ESCRT machinery. Is required for efficient abscission during cytokinesis, but not for HIV-1 budding. The involvment in the MVB pathway is not established. Involved in recruiting VPS4A and/or VPS4B to the midbody of dividing cells.

Pongo abelii (taxid: 9601)

>sp|Q54I39|IST1L_DICDI IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 104/172 (60%), Gaps = 2/172 (1%)

Query: 16  KCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAY 75
           K K  L L +SR+++L+NK+   ++  ++ +A+ L+   E  ARIRVE +IR++ +   +
Sbjct: 12  KLKVQLKLAVSRIQILKNKKANIVRDEKRNVAELLRKKNEESARIRVETIIRDEYLIECF 71

Query: 76  AVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGK 135
            ++E+ CE L AR+ ++ +  E P EM+E++ ++++++ R   +P+L QIKN   AKYGK
Sbjct: 72  QIIEVLCELLHARINLINATTEMPLEMKESIFTLVYSSQRIQ-IPELEQIKNQLKAKYGK 130

Query: 136 EFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWDSSN 187
             +   +     + VN  I+ KLS + P      + L EIA++ N++W  S+
Sbjct: 131 G-LENEANCHCSTHVNPKIVHKLSYATPDPSIIFQTLSEIAEKFNVDWCGSD 181

Dictyostelium discoideum (taxid: 44689)

>sp|P53843|IST1_YEAST Vacuolar protein sorting-associated protein IST1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IST1 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 10/179 (5%)

Query: 13  FGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNIC 72
           F  K KT L + I R++  Q K++   +Q R+++AQ L   +E  A  RVE +I +    
Sbjct: 8   FTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHI 67

Query: 73  AAYAVLELFCEFLLARVPILES--------QKECPTEMREAVASIIFAAPRCSDLPDLLQ 124
               +LEL+CE LLARV ++          ++     + EA+ S+I+A     ++ +L Q
Sbjct: 68  ELLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQ 127

Query: 125 IKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW 183
           +K+L + K   EFV  V  +     V   II+K S S P  E     LKEIA+ +++ +
Sbjct: 128 LKDLMAWKINVEFVNGV--IADHIDVPEKIIKKCSPSVPKEELVDLYLKEIAKTYDVPY 184

Involved in a late step in sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles. The lumenal sequestrated membrane proteins are targeted into the vacuole after fusion of the endosome with the vacuole. Regulates the recruitment of VPS4 to the ESCRT-III complex, probably in conjunction with DID2, and VPS4 catalyzes the disassembly of the ESCRT-III complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
118485690	314	unknown [Populus trichocarpa]	0.957	1.0	0.738	1e-122
255586687	327	protein with unknown function [Ricinus c	0.990	0.993	0.721	1e-118
225423991	329	PREDICTED: IST1 homolog [Vitis vinifera]	0.993	0.990	0.712	1e-117
255645697	324	unknown [Glycine max]	0.981	0.993	0.671	1e-110
356575558	324	PREDICTED: IST1 homolog [Glycine max]	0.981	0.993	0.678	1e-109
388516633	326	unknown [Medicago truncatula]	0.993	1.0	0.664	1e-107
356536310	324	PREDICTED: IST1 homolog [Glycine max]	0.978	0.990	0.664	1e-103
21595428	323	unknown [Arabidopsis thaliana]	0.935	0.950	0.643	1e-103
18395668	323	Regulator of Vps4 activity in the MVB pa	0.935	0.950	0.640	1e-102
297851092	323	hypothetical protein ARALYDRAFT_890165 [	0.935	0.950	0.646	1e-100

>gi|118485690|gb|ABK94695.1| unknown [Populus trichocarpa]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/318 (73%), Positives = 264/318 (83%), Gaps = 4/318 (1%)

Query: 1   MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARI 60
           MSLLNQLFNRGVFG+KCKT L L ISR+KLLQNKR+LQL+ MRKEIAQFLQAGQE IARI
Sbjct: 1   MSLLNQLFNRGVFGSKCKTCLNLAISRIKLLQNKRDLQLKHMRKEIAQFLQAGQEAIARI 60

Query: 61  RVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP 120
           RVEHVIREQNI AAY +LELFCEF+L RVPILESQKECP E+REA+ASIIFAAPRCS++P
Sbjct: 61  RVEHVIREQNIRAAYEILELFCEFVLVRVPILESQKECPAELREAIASIIFAAPRCSEVP 120

Query: 121 DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN 180
           DLLQIKNLF+AKYGKEF +A SELRPDS VNR IIE+LSV AP +EARLKVLKEIAQE +
Sbjct: 121 DLLQIKNLFAAKYGKEFNMAASELRPDSGVNRAIIERLSVRAPPAEARLKVLKEIAQEFS 180

Query: 181 LNWDSSNTESELSKKHEDLLGGSKEICGWASFPPVPIKQGYPQSSPSNGAHPITPTKTEQ 240
           L WDSSNTE+EL KKHEDLLGGSKEI   A  P  P KQ  P S PSNGAH    T  +Q
Sbjct: 181 LEWDSSNTEAELGKKHEDLLGGSKEIMADAILPQAPTKQNSPLSPPSNGAHSTLNTDNKQ 240

Query: 241 GSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVSDFKRATPSQSSDVLERARAAIASAE 300
           GS RL+AP   S+MP ++ NEIE S+++     ++D +R T SQSSDVLERAR AIASAE
Sbjct: 241 GSHRLEAPALVSNMPRVNANEIEPSIRNY----MADVQRETTSQSSDVLERARVAIASAE 296

Query: 301 RASAAARTAAELVNVKFG 318
           RA+ AAR AAELVNV+FG
Sbjct: 297 RATIAARAAAELVNVQFG 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586687|ref|XP_002533970.1| protein with unknown function [Ricinus communis] gi|223526053|gb|EEF28417.1| protein with unknown function [Ricinus communis]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/330 (72%), Positives = 271/330 (82%), Gaps = 5/330 (1%)

Query: 1   MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARI 60
           MSLLNQLFNRGVFGAKCKT LTL ISR+KLLQNKR+LQL+ MRKEIAQFLQAGQE IARI
Sbjct: 1   MSLLNQLFNRGVFGAKCKTCLTLSISRIKLLQNKRDLQLKHMRKEIAQFLQAGQEAIARI 60

Query: 61  RVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP 120
           RVEHVIREQNI AAY +LELFCEF+LARVPILESQKECP E++EAVASIIFAAPRCS++P
Sbjct: 61  RVEHVIREQNIWAAYEILELFCEFVLARVPILESQKECPFELQEAVASIIFAAPRCSEVP 120

Query: 121 DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN 180
           DLLQIKNLF+ KYGKEFV+A SELRPDS VNR IIE+LSV+AP  EARLKVLKEIA E+N
Sbjct: 121 DLLQIKNLFTTKYGKEFVMAASELRPDSGVNRAIIERLSVNAPPGEARLKVLKEIAHEYN 180

Query: 181 LNWDSSNTESELSKKHEDLLGGSKEICGWASFPPVPIKQGYPQSSPSNGAHPITPTKTEQ 240
           L WDSSNTE+EL KKHEDLLGGSK+I    +    P+KQ  P+    NG  PI  T ++Q
Sbjct: 181 LEWDSSNTEAELGKKHEDLLGGSKQIVAEGALSQAPMKQSSPKPPCLNGTSPIIDTDSKQ 240

Query: 241 G--SQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVSDFKRATPSQSSDVLERARAAIAS 298
           G  SQ +QAP+  S +  + +NEIE S++       +D KR T + SSDVLERARAAIAS
Sbjct: 241 GFVSQNVQAPSTISHLTSV-DNEIEPSIRHQTTEAFTDAKRRTLA-SSDVLERARAAIAS 298

Query: 299 AERASAAARTAAELVNVKFGSWKLEEGKSS 328
           AERA+AAAR AAELVNV+FGS KL +GKSS
Sbjct: 299 AERATAAARAAAELVNVQFGSLKL-QGKSS 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423991|ref|XP_002282696.1| PREDICTED: IST1 homolog [Vitis vinifera] gi|297737811|emb|CBI27012.3| unnamed protein product [Vitis vinifera]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/327 (71%), Positives = 265/327 (81%), Gaps = 1/327 (0%)

Query: 1   MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARI 60
           MSLLNQLFNRG+ GAKCKT L L ISR+KLLQNKR L L+QMRKEIAQFLQ GQE IARI
Sbjct: 1   MSLLNQLFNRGILGAKCKTCLNLAISRIKLLQNKRSLHLKQMRKEIAQFLQTGQEAIARI 60

Query: 61  RVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP 120
           RVEHVIREQNI AAY +LELFCEF+LARVPILE+Q+ECPTE+REAVASIIFAAPRCSD+P
Sbjct: 61  RVEHVIREQNIWAAYEILELFCEFVLARVPILETQRECPTELREAVASIIFAAPRCSDVP 120

Query: 121 DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN 180
           DLLQIKNLF+AKYGKEF+LA SELRPD+SVNR IIEKLSVS P+ EA+LK LKEIAQE+N
Sbjct: 121 DLLQIKNLFAAKYGKEFILAASELRPDTSVNRAIIEKLSVSTPTGEAKLKQLKEIAQEYN 180

Query: 181 LNWDSSNTESELSKKHEDLLGGSKEICGWASFPPVPIKQGYPQSSPSNGAHPITPTKTEQ 240
           L WDSSNTE+E SKKHEDLL GSK++C   +    P  Q   Q  P++  + I+    +Q
Sbjct: 181 LEWDSSNTEAEFSKKHEDLLDGSKQVCSGGAISQAPSIQSSLQCPPTSEPNVISSRTIQQ 240

Query: 241 GSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVSDFKRATPSQSSDVLERARAAIASAE 300
           G Q L +PN  S   L S +E+E S+KS N   VSD K  T SQSSD+LERARAAIASA+
Sbjct: 241 GIQALHSPNTASKKSLSSPDEVEHSIKSYNAGQVSDSKE-TRSQSSDILERARAAIASAD 299

Query: 301 RASAAARTAAELVNVKFGSWKLEEGKS 327
           RASAAAR AAEL N+ FG WKLEEG+S
Sbjct: 300 RASAAARAAAELANITFGPWKLEEGQS 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645697|gb|ACU23342.1| unknown [Glycine max]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/323 (67%), Positives = 254/323 (78%), Gaps = 1/323 (0%)

Query: 1   MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARI 60
           MSLLNQLFNRGVFG +CKT L L ISR+KLLQNKR++QL+QM KEI+QFLQAGQE IARI
Sbjct: 1   MSLLNQLFNRGVFGTRCKTCLNLAISRIKLLQNKRDMQLKQMCKEISQFLQAGQEAIARI 60

Query: 61  RVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP 120
           RVEH+IREQN  AAY +LELFCEF+LARVPI+E+Q+ECPTE+REA+ASIIFAAPRCSD+P
Sbjct: 61  RVEHIIREQNTWAAYEILELFCEFVLARVPIIENQRECPTELREAIASIIFAAPRCSDVP 120

Query: 121 DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN 180
           DLL IKNLF+ KYGKEFV AVSELRPDS VNRTIIEKLSVSAPS E +LKVL EIA+E+N
Sbjct: 121 DLLHIKNLFTTKYGKEFVSAVSELRPDSGVNRTIIEKLSVSAPSGEVKLKVLWEIAEEYN 180

Query: 181 LNWDSSNTESELSKKHEDLLGGSKEICGWASFPPVPIKQGYPQSSPSNGAHPITPTKTEQ 240
           + WDSS TE+E  K HEDLLGG+K++   A+    P + G    SP      I P + +Q
Sbjct: 181 IAWDSSKTEAEFRKNHEDLLGGAKQVSAGATLSHTPSRNGSNNPSPCITEPSIKPAQDKQ 240

Query: 241 GSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVSDFKRATPSQSSDVLERARAAIASAE 300
             + L+AP+P ++   L  NEIEQS K++N VP  D K  T  QS DVLE+ARAAIA A+
Sbjct: 241 EYKHLEAPSPSNNNFSLDTNEIEQSHKNNN-VPAGDTKSETRFQSFDVLEKARAAIAFAD 299

Query: 301 RASAAARTAAELVNVKFGSWKLE 323
           RASAAAR AA LV   FGS KLE
Sbjct: 300 RASAAARAAAALVQSNFGSLKLE 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575558|ref|XP_003555907.1| PREDICTED: IST1 homolog [Glycine max]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/323 (67%), Positives = 257/323 (79%), Gaps = 1/323 (0%)

Query: 1   MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARI 60
           MSLLNQLFNRGVFG +CKT L L ISR+KLLQNKR++QL+QM KEI+QFLQAGQE IARI
Sbjct: 1   MSLLNQLFNRGVFGTRCKTCLNLAISRIKLLQNKRDMQLKQMCKEISQFLQAGQEAIARI 60

Query: 61  RVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP 120
           RVEH+IREQN  AAY +LELFCEF+LARVPI+E+Q+ECPTE+REA+ASIIFAAPRCSD+P
Sbjct: 61  RVEHIIREQNTWAAYEILELFCEFVLARVPIIENQRECPTELREAIASIIFAAPRCSDVP 120

Query: 121 DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN 180
           DLL IKNLF+ KYGKEFV AVSELRPDS VNRTIIEKLSVSAPS E +LKVL+EIA+E+N
Sbjct: 121 DLLHIKNLFTTKYGKEFVSAVSELRPDSGVNRTIIEKLSVSAPSGEVKLKVLREIAEEYN 180

Query: 181 LNWDSSNTESELSKKHEDLLGGSKEICGWASFPPVPIKQGYPQSSPSNGAHPITPTKTEQ 240
           + WDSS TE+E  K HEDLLGG+K++   A+    P + G    SP      I P + +Q
Sbjct: 181 IAWDSSKTEAEFRKNHEDLLGGAKQVSAGATLSHTPSRNGSNNPSPCITEPSIKPVQDKQ 240

Query: 241 GSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVSDFKRATPSQSSDVLERARAAIASAE 300
             + L+AP+P ++   L  NEIEQS K++N VP  D K  T  QSSDVLE+ARAAIASA+
Sbjct: 241 EYKHLEAPSPSNNNSSLDTNEIEQSHKNNN-VPAGDAKSETRFQSSDVLEKARAAIASAD 299

Query: 301 RASAAARTAAELVNVKFGSWKLE 323
           RASAAAR AA LV   FGS KLE
Sbjct: 300 RASAAARAAAALVQSNFGSLKLE 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516633|gb|AFK46378.1| unknown [Medicago truncatula]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/328 (66%), Positives = 258/328 (78%), Gaps = 2/328 (0%)

Query: 1   MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARI 60
           MSLLNQLF+RGVF  +CKT L L ISRMKLLQNKR++QL+QMRKEI+QFLQAGQEPIARI
Sbjct: 1   MSLLNQLFSRGVFSTRCKTCLNLAISRMKLLQNKRDVQLKQMRKEISQFLQAGQEPIARI 60

Query: 61  RVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP 120
           RVEH+IREQNI AAY +LELFCEF+LARVPI+ESQKECP+E+REA+ASIIFAAPRCSD+P
Sbjct: 61  RVEHIIREQNIWAAYEILELFCEFVLARVPIIESQKECPSELREAIASIIFAAPRCSDIP 120

Query: 121 DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN 180
           DLL I+NLF+ KYGKEFV A+SELRPDS VNRTIIEKLSVSAPS E +LKVL +IA+E+N
Sbjct: 121 DLLHIRNLFTTKYGKEFVTAISELRPDSGVNRTIIEKLSVSAPSGEIKLKVLTDIAEEYN 180

Query: 181 LNWDSSNTESELSKKHEDLLGGSKEICGWASFPPVPIKQGYPQSSPSNGAHPITPTKTEQ 240
           L WDSSNT +E  K HEDLLGG+K++   A+    P K      S SN    I  T  +Q
Sbjct: 181 LAWDSSNTAAEFRKNHEDLLGGAKQVGVGAALSHAPSKNNSNNLSASNTEQSIKSTHDKQ 240

Query: 241 GSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVSDFKRATPSQSSDVLERARAAIASAE 300
             ++L+A  P ++   L+  EIEQS K +N V  +D K  T  QSSD+LE+ARAAIASA 
Sbjct: 241 QYEQLEASIPSNNNSWLNTKEIEQSHK-NNDVQFNDTKTETIFQSSDILEKARAAIASAN 299

Query: 301 RASAAARTAAELVNVKFGSWKLEEGKSS 328
           RA+AAAR AA L +  FGS KL EG+SS
Sbjct: 300 RATAAARAAASLAHSDFGSLKL-EGESS 326

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536310|ref|XP_003536682.1| PREDICTED: IST1 homolog [Glycine max]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/322 (66%), Positives = 252/322 (78%), Gaps = 1/322 (0%)

Query: 1   MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARI 60
           MSL+NQLFNRGVFG +CKT L L ISR+KLLQNKR++QL+QM KEI+QFLQAGQE IARI
Sbjct: 1   MSLINQLFNRGVFGTRCKTCLNLAISRIKLLQNKRDIQLKQMCKEISQFLQAGQEAIARI 60

Query: 61  RVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP 120
           RVEH+IREQN  AAY +LELFCEF+LARVPI+E+Q+ECPTE+REA+ASIIFAAPRCSD+P
Sbjct: 61  RVEHIIREQNTWAAYEILELFCEFVLARVPIIENQRECPTELREAIASIIFAAPRCSDVP 120

Query: 121 DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN 180
           DLL IKNLF+ KYGKEFV AVSELRPDS VNRTIIEKLSVSAPS E +LKVL+EIA+E+N
Sbjct: 121 DLLHIKNLFTTKYGKEFVSAVSELRPDSGVNRTIIEKLSVSAPSGEVKLKVLREIAEEYN 180

Query: 181 LNWDSSNTESELSKKHEDLLGGSKEICGWASFPPVPIKQGYPQSSPSNGAHPITPTKTEQ 240
           + WDSS TE+E  K HEDLLGG+K++   A+    P + G    SP      I     +Q
Sbjct: 181 IAWDSSKTEAEFRKNHEDLLGGAKQVSAGATLSHTPNRNGSNNPSPRITEPSIKSVHAKQ 240

Query: 241 GSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVSDFKRATPSQSSDVLERARAAIASAE 300
             + L+AP+P ++  LL+ NEIE S   +N VP  D K     QSSDVLE+ARAAIASA+
Sbjct: 241 EYKPLEAPSPSNNNSLLNTNEIEHS-HENNDVPAGDAKSEIRFQSSDVLEKARAAIASAD 299

Query: 301 RASAAARTAAELVNVKFGSWKL 322
           RASAAAR AA LV   FGS KL
Sbjct: 300 RASAAARAAAALVQSNFGSLKL 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21595428|gb|AAM66100.1| unknown [Arabidopsis thaliana]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/320 (64%), Positives = 246/320 (76%), Gaps = 13/320 (4%)

Query: 1   MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARI 60
           MSLLNQLFNRG+FGAKCKTSL L I+RMKLLQNKR++QL+ M+KEIA FLQAGQEPIARI
Sbjct: 1   MSLLNQLFNRGIFGAKCKTSLNLAIARMKLLQNKRDMQLKHMKKEIAHFLQAGQEPIARI 60

Query: 61  RVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP 120
           RVEHVIRE N+ AAY +LELFCEF+LARVPILES+KECP E+REA+ASIIFAAPRCS++P
Sbjct: 61  RVEHVIREMNLWAAYEILELFCEFILARVPILESEKECPRELREAIASIIFAAPRCSEVP 120

Query: 121 DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN 180
           DLLQIKNLF  KYGKEF++  SELRPDS VNRTIIEKLS ++PS  ARLK+LKEIAQE++
Sbjct: 121 DLLQIKNLFGTKYGKEFIMVASELRPDSGVNRTIIEKLSPTSPSGAARLKMLKEIAQEYS 180

Query: 181 LNWDSSNTESELSKKHEDLLGGSKEICGWASFPPV-PIKQGYPQSSPSNGAHPITPTKTE 239
           LNWDSS TE+E  K HEDLLGG+K+I          P +QGY QSS S     + P +  
Sbjct: 181 LNWDSSATEAEFMKSHEDLLGGAKQIHRQDGISESRPSQQGYGQSSVSREVESL-PAEAT 239

Query: 240 QGSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVSDFKRATPSQSSDVLERARAAIASA 299
           Q  Q+LQA NP           + +S+ SS +   S     T    +DV+E ARAA+ASA
Sbjct: 240 QRFQKLQAQNP-----------VSKSMPSSKLTSASQAPPDTRRNQTDVMEIARAALASA 288

Query: 300 ERASAAARTAAELVNVKFGS 319
           +RA+AAAR AA+LVNV +G+
Sbjct: 289 DRATAAARAAAQLVNVSYGA 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395668|ref|NP_564235.1| Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana] gi|12321514|gb|AAG50817.1|AC079281_19 unknown protein [Arabidopsis thaliana] gi|20465254|gb|AAM19947.1| At1g25420/F2J7_16 [Arabidopsis thaliana] gi|23505891|gb|AAN28805.1| At1g25420/F2J7_16 [Arabidopsis thaliana] gi|332192499|gb|AEE30620.1| Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/320 (64%), Positives = 245/320 (76%), Gaps = 13/320 (4%)

Query: 1   MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARI 60
           MSLLNQLFNRG+FGAKCKTSL L I+RMKLLQNKR++QL+ M+KEIA FLQAGQEPIARI
Sbjct: 1   MSLLNQLFNRGIFGAKCKTSLNLAIARMKLLQNKRDMQLKHMKKEIAHFLQAGQEPIARI 60

Query: 61  RVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP 120
           RVEHVIRE N+ AAY +LELFCEF+LARVPILES+KECP E+REA+ASIIFAAPRCS++P
Sbjct: 61  RVEHVIREMNLWAAYEILELFCEFILARVPILESEKECPRELREAIASIIFAAPRCSEVP 120

Query: 121 DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN 180
           DLLQIKNLF  KYGKEF++  SELRPDS VNRTIIEKLS ++PS  ARLK+LKEIAQE++
Sbjct: 121 DLLQIKNLFGTKYGKEFIMVASELRPDSGVNRTIIEKLSPTSPSGAARLKMLKEIAQEYS 180

Query: 181 LNWDSSNTESELSKKHEDLLGGSKEICGWASFPPV-PIKQGYPQSSPSNGAHPITPTKTE 239
           LNWDSS TE+E  K HEDLLGG+K+I          P +QGY QSS S     + P +  
Sbjct: 181 LNWDSSATEAEFMKSHEDLLGGAKQIHRQDGISESRPSQQGYGQSSVSREVESL-PAEAT 239

Query: 240 QGSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVSDFKRATPSQSSDVLERARAAIASA 299
           Q  Q+LQA NP           + +S+ SS +         T    +DV+E ARAA+ASA
Sbjct: 240 QRFQKLQAQNP-----------VSKSMPSSKLTSAFQAPPDTRRNQTDVMEIARAALASA 288

Query: 300 ERASAAARTAAELVNVKFGS 319
           +RA+AAAR AA+LVNV +G+
Sbjct: 289 DRATAAARAAAQLVNVSYGA 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851092|ref|XP_002893427.1| hypothetical protein ARALYDRAFT_890165 [Arabidopsis lyrata subsp. lyrata] gi|297339269|gb|EFH69686.1| hypothetical protein ARALYDRAFT_890165 [Arabidopsis lyrata subsp. lyrata]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/320 (64%), Positives = 249/320 (77%), Gaps = 13/320 (4%)

Query: 1   MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARI 60
           MSLLNQLFNRG+FGAKCKTSL L I+RMKLLQNKR++QL+ M+KEIAQFLQAGQEPIARI
Sbjct: 1   MSLLNQLFNRGIFGAKCKTSLNLAIARMKLLQNKRDMQLKHMKKEIAQFLQAGQEPIARI 60

Query: 61  RVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP 120
           RVEHVIRE N+ AAY +LELFCEF+LARVPILES+KECP E+REA+ASIIFAAPRCS++P
Sbjct: 61  RVEHVIREMNLWAAYEILELFCEFVLARVPILESEKECPRELREAIASIIFAAPRCSEVP 120

Query: 121 DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN 180
           DLLQIKNLF  KYGKEF++  SELRPDS VNRTIIEKLS ++PS EARLK+LK+IAQE++
Sbjct: 121 DLLQIKNLFGTKYGKEFIMVASELRPDSGVNRTIIEKLSPTSPSGEARLKMLKDIAQEYS 180

Query: 181 LNWDSSNTESELSKKHEDLLGGSKEICGWASFPPV-PIKQGYPQSSPSNGAHPITPTKTE 239
           L WDSS TE+E  K HEDLLGG+K+I          P +QGY QSS S  A  + P +  
Sbjct: 181 LKWDSSATEAEFMKSHEDLLGGAKQIHRQDGISESRPSQQGYSQSSVSREAESL-PAEAT 239

Query: 240 QGSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVSDFKRATPSQSSDVLERARAAIASA 299
           Q  Q+LQA NP           + +++ SS +   S     T    +DV+ERARAA+ASA
Sbjct: 240 QRFQKLQAQNP-----------VSKNMPSSKLTSASQAPPDTRQDQTDVMERARAALASA 288

Query: 300 ERASAAARTAAELVNVKFGS 319
           +RA+AAAR AA+LVNV +G+
Sbjct: 289 DRAAAAARAAAQLVNVSYGA 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TAIR|locus:2031250	323	AT1G25420 [Arabidopsis thalian	0.935	0.950	0.584	1.7e-89
TAIR|locus:2026150	649	AT1G34220 "AT1G34220" [Arabido	0.463	0.234	0.592	9.9e-64
TAIR|locus:2127988	466	AT4G35730 "AT4G35730" [Arabido	0.631	0.444	0.492	4.8e-55
TAIR|locus:2052035	937	AT2G19710 "AT2G19710" [Arabido	0.603	0.211	0.467	1.4e-48
TAIR|locus:2118334	1090	AT4G29440 "AT4G29440" [Arabido	0.618	0.186	0.423	2.8e-44
TAIR|locus:2009892	409	AT1G13340 [Arabidopsis thalian	0.573	0.459	0.342	4.8e-31
UNIPROTKB|E2RPE3	366	IST1 "Uncharacterized protein"	0.539	0.483	0.374	1.6e-28
UNIPROTKB|Q3ZBV1	364	IST1 "IST1 homolog" [Bos tauru	0.539	0.486	0.374	1.2e-26
UNIPROTKB|E1C062	366	KIAA0174 "Uncharacterized prot	0.539	0.483	0.379	1.5e-26
UNIPROTKB|F1MXJ5	364	IST1 "IST1 homolog" [Bos tauru	0.539	0.486	0.374	3.2e-26

TAIR|locus:2031250 AT1G25420 [Arabidopsis thaliana (taxid:3702)]

 Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
 Identities = 187/320 (58%), Positives = 223/320 (69%)

Query:     1 MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARI 60
             MSLLNQLFNRG+FGAKCKTSL L I+RMKLLQNKR++QL+ M+KEIA FLQAGQEPIARI
Sbjct:     1 MSLLNQLFNRGIFGAKCKTSLNLAIARMKLLQNKRDMQLKHMKKEIAHFLQAGQEPIARI 60

Query:    61 RVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP 120
             RVEHVIRE N+ AAY +LELFCEF+LARVPILES+KECP E+REA+ASIIFAAPRCS++P
Sbjct:    61 RVEHVIREMNLWAAYEILELFCEFILARVPILESEKECPRELREAIASIIFAAPRCSEVP 120

Query:   121 DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN 180
             DLLQIKNLF  KYGKEF++  SELRPDS VNRTIIEKLS ++PS  ARLK+LKEIAQE++
Sbjct:   121 DLLQIKNLFGTKYGKEFIMVASELRPDSGVNRTIIEKLSPTSPSGAARLKMLKEIAQEYS 180

Query:   181 LNWDSSNTESELSKKHEDLLGGSKEICGWASFPPV-PIKQGYPQSSPSNGAHPITPTKTE 239
             LNWDSS TE+E  K HEDLLGG+K+I          P +QGY QSS S     + P +  
Sbjct:   181 LNWDSSATEAEFMKSHEDLLGGAKQIHRQDGISESRPSQQGYGQSSVSREVESL-PAEAT 239

Query:   240 QGSQRLQAXXXXXXXXXXXXXEIEQSVKSSNVVPVSDFKRATPSQSSDVLXXXXXXXXXX 299
             Q  Q+LQA              + +S+ SS +         T    +DV+          
Sbjct:   240 QRFQKLQAQN-----------PVSKSMPSSKLTSAFQAPPDTRRNQTDVMEIARAALASA 288

Query:   300 XXXXXXXXXXXXLVNVKFGS 319
                         LVNV +G+
Sbjct:   289 DRATAAARAAAQLVNVSYGA 308

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2026150 AT1G34220 "AT1G34220" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
 Identities = 90/152 (59%), Positives = 122/152 (80%)

Query:     1 MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARI 60
             MS+L+  FN+G   AKCKT L L I R+KL++N+RE Q++QMR+EIA+ L+ GQE  ARI
Sbjct:     1 MSMLDSFFNKGFKAAKCKTLLKLTIPRIKLIRNRREAQIKQMRREIAKLLETGQEATARI 60

Query:    61 RVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP 120
             RVEH+IRE+ + AA  +LELFCE +  R+PI+E+Q+ECP +++EA++S+ FAAPRCSDL 
Sbjct:    61 RVEHIIREEKMMAAQEILELFCELIAVRLPIIEAQRECPLDLKEAISSVCFAAPRCSDLT 120

Query:   121 DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNR 152
             +L Q++ LF +KYGKEFV A SEL+PDS VNR
Sbjct:   121 ELQQVQILFVSKYGKEFVAAASELKPDSGVNR 152

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2127988 AT4G35730 "AT4G35730" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 102/207 (49%), Positives = 156/207 (75%)

Query:     7 LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
             LF RG   +KCKT+  + ++R+KL++NKR + ++QMR++IA  LQ+GQ+  ARIRVEHVI
Sbjct:    21 LFRRGFNSSKCKTAAKMAVARIKLIRNKRLVVVKQMRRDIAVLLQSGQDATARIRVEHVI 80

Query:    67 REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIK 126
             REQNI AA  ++ELFCE +++R+ I+  QK+CP +++E +AS+IFAAPRCS++P+L  ++
Sbjct:    81 REQNIQAANEIIELFCELIVSRLTIITKQKQCPVDLKEGIASLIFAAPRCSEIPELGDLR 140

Query:   127 NLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWDSS 186
             ++F+ KYGK+FV A ++LRP   VNR +I+KLSV  P  E +LK++KEIA+E  ++WD++
Sbjct:   141 DIFAKKYGKDFVSAATDLRPSCGVNRMLIDKLSVRNPGGEYKLKIMKEIAKEFQVDWDTT 200

Query:   187 NTESELSKKHEDLLGGSKEICGWASFP 213
              TE EL K  E+ + G ++    +S P
Sbjct:   201 ETEQELLKPQEESIDGPRKFVSASSLP 227

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2052035 AT2G19710 "AT2G19710" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 94/201 (46%), Positives = 147/201 (73%)

Query:     4 LNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVE 63
             + ++  RG   AKCKT+L +  SR+K+L+NK+E+Q++Q+R+E+AQ L++GQ P ARIRVE
Sbjct:     1 MKKVLQRGFKPAKCKTALQMANSRLKILKNKKEIQIKQLRRELAQLLESGQTPTARIRVE 60

Query:    64 HVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLL 123
             HV+RE+   AAY ++ ++CE L+ R+ ++ESQK CP +++EAV S++FA+ R SD+P+L 
Sbjct:    61 HVVREEKTVAAYELIGIYCELLVVRLGVIESQKNCPIDLKEAVTSVLFASQRLSDVPELS 120

Query:   124 QIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW 183
             +I   F+ KYGK+F  +  ELRPDS V+R ++EKLS  AP    ++K+L  IA+EHN+ W
Sbjct:   121 EIFKQFTTKYGKDFSTSAVELRPDSGVSRLLVEKLSAKAPDGPTKVKILMAIAEEHNVVW 180

Query:   184 DSSN-TESELSKKHEDLLGGS 203
             ++ +  ES+   K  +LL G+
Sbjct:   181 EAQSFVESD--PKDTELLNGA 199

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118334 AT4G29440 "AT4G29440" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.8e-44, P = 2.8e-44
 Identities = 86/203 (42%), Positives = 141/203 (69%)

Query:     4 LNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVE 63
             + ++ +R    AKCK +L +  SR+K+L+NK++ Q++Q+R+E+A  L++GQ   A+IRVE
Sbjct:     1 MKKVLHRSFKPAKCKIALQMAASRLKILKNKKDTQIKQLRRELAHLLESGQTQTAKIRVE 60

Query:    64 HVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLL 123
             HV+RE+   AAY ++ ++CE L+AR+ +++SQK CP +++EAVAS+++A+ R +D+ +L 
Sbjct:    61 HVVREEKTVAAYELVGIYCELLVARLGVIDSQKTCPNDLKEAVASVLYASQRLTDVGELS 120

Query:   124 QIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW 183
              I   FSAKYGK+FV A   L+PDS V+R ++EKLSV AP    ++K+L EIA +HN+ W
Sbjct:   121 DIVKHFSAKYGKDFVSAAIGLQPDSGVSRLLVEKLSVKAPDGPTKIKILTEIATQHNVTW 180

Query:   184 DSSNTESELSKKHEDLLGGSKEI 206
             ++ +      K+     G S  +
Sbjct:   181 EAESLVESDPKETMSASGASSSV 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009892 AT1G13340 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
 Identities = 65/190 (34%), Positives = 111/190 (58%)

Query:     4 LNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVE 63
             L+ L  R     K K+ +TL ++R+ +L+N+R+ +L Q   ++ + L+ GQ   A  RV+
Sbjct:     5 LDALLGRSFKTNKFKSLITLALTRLSILKNQRQARLSQAISDVTELLKLGQHEHAYHRVD 64

Query:    64 HVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLL 123
              V+++QN       +  +    L R+ + E  ++CP E+ EAV+ ++FAA R  + P+L 
Sbjct:    65 QVVKDQNTLDVLFFIHGYFTLCLDRIHLFEHNRDCPEELLEAVSGLLFAASRIGEFPELQ 124

Query:   124 QIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN--L 181
             +I+N+  +++GK+      ELR +  V+  II+KLS   P  E R+K LKEIA E+N  L
Sbjct:   125 EIRNVLISRFGKDLAARSIELRSNCGVDPKIIQKLSTRPPPKEVRMKALKEIAAENNIVL 184

Query:   182 NWDSSNTESE 191
               D ++T +E
Sbjct:   185 KLDQASTSTE 194

GO:0005737 "cytoplasm" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

UNIPROTKB|E2RPE3 IST1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 296 (109.3 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 67/179 (37%), Positives = 110/179 (61%)

Query:     7 LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
             +   G    + + +L L I+R+KLL+ K+    Q+ RKEIA +L AG++  ARIRVEH+I
Sbjct:     1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query:    67 REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
             RE  +  A  +LEL+C+ LLAR  +++S KE  + + E+V+++I+AAPR  S++ +L  +
Sbjct:    61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120

Query:   126 KNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
              +   AKY KE+   +       +VN  ++ KLSV AP      + L EIA+ +N+ ++
Sbjct:   121 ADQLCAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178

GO:0048672 "positive regulation of collateral sprouting" evidence=IEA

UNIPROTKB|Q3ZBV1 IST1 "IST1 homolog" [Bos taurus (taxid:9913)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 67/179 (37%), Positives = 111/179 (62%)

Query:     7 LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
             +   G+   + + +L L I+R+KLL+ K+    Q+ RKEIA +L AG++  ARIRVEH+I
Sbjct:     1 MLGSGIKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query:    67 REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
             RE  +  A  +LEL+C+ LLAR  +++S KE  + + E+V+++I+AAPR  S++ +L  +
Sbjct:    61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120

Query:   126 KNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
              +   AKY KE+   +       +VN  ++ KLSV AP      + L EIA+ +N+ ++
Sbjct:   121 ADQLCAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|E1C062 KIAA0174 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 68/179 (37%), Positives = 110/179 (61%)

Query:     7 LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
             +   G    + + +L L I+R+KLL+ K+    Q+ RKEIA +L AG++  ARIRVEH+I
Sbjct:     1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query:    67 REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
             RE  +  A  +LEL+C+ LLAR  +++S KE  + + EAV+++I+AAPR  S++ +L  +
Sbjct:    61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAEAVSTLIWAAPRLQSEVAELKIV 120

Query:   126 KNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
              +   AKY KE+   +       +VN  ++ KLSV AP      + L EIA+ +N+ ++
Sbjct:   121 ADQLCAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178

GO:0048672 "positive regulation of collateral sprouting" evidence=IEA

UNIPROTKB|F1MXJ5 IST1 "IST1 homolog" [Bos taurus (taxid:9913)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 67/179 (37%), Positives = 110/179 (61%)

Query:     7 LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
             +   G    + + +L L I+R+KLL+ K+    Q+ RKEIA +L AG++  ARIRVEH+I
Sbjct:     1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60

Query:    67 REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
             RE  +  A  +LEL+C+ LLAR  +++S KE  + + E+V+++I+AAPR  S++ +L  +
Sbjct:    61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120

Query:   126 KNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
              +   AKY KE+   +       +VN  ++ KLSV AP      + L EIA+ +N+ ++
Sbjct:   121 ADQLCAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178

GO:0048672 "positive regulation of collateral sprouting" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030347001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (329 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
pfam03398	165	pfam03398, Ist1, Regulator of Vps4 activity in the	4e-78

>gnl|CDD|217533 pfam03398, Ist1, Regulator of Vps4 activity in the MVB pathway

 Score =  235 bits (602), Expect = 4e-78
 Identities = 96/166 (57%), Positives = 121/166 (72%), Gaps = 1/166 (0%)

Query: 18  KTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAV 77
           KT L L ISR+KLLQNK+E   +Q R+++AQ L+ G+E  ARIRVE VIRE N   A  +
Sbjct: 1   KTQLKLAISRLKLLQNKKEALAKQARRDVAQLLKLGKEDSARIRVEQVIREDNYLEALEI 60

Query: 78  LELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEF 137
           LEL+CE LLARV +LE  KECP E++EAVAS+IFAAPRC +LP+L Q+++L + KYGKEF
Sbjct: 61  LELYCELLLARVSLLEKSKECPDELKEAVASLIFAAPRCGELPELQQLRDLLAEKYGKEF 120

Query: 138 VLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW 183
             A  + R D  VN  I+EKLSV  PS E   K LKEIA+E+N+ W
Sbjct: 121 AAAAVDNR-DCGVNPKIVEKLSVKPPSEELVEKYLKEIAKEYNVPW 165

ESCRT-I, -II, and -III are endosomal sorting complexes required for transporting proteins and carry out cargo sorting and vesicle formation in the multivesicular bodies, MVBs, pathway. These complexes are transiently recruited from the cytoplasm to the endosomal membrane where they bind transmembrane proteins previously marked for degradation by mono-ubiquitination. Assembly of ESCRT-III, a complex composed of at least four subunits (Vps2, Vps24, Vps20, Snf7), is intimately linked with MVB vesicle formation, its disassembly being an essential step in the MVB vesicle formation, a reaction that is carried out by Vps4, an AAA-type ATPase. The family Ist1 is a regulator of Vps4 activity; by interacting with Did2 and Vps4, Ist1 appears to regulate the recruitment and oligomerisation of Vps4. Together Ist1, Did2, and Vta1 form a network of interconnected regulatory proteins that modulate Vps4 activity, thereby regulating the flow of cargo through the MVB pathway. Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
KOG2027	388	consensus Spindle pole body protein [Cytoskeleton]	100.0
PF03398	165	Ist1: Regulator of Vps4 activity in the MVB pathwa	100.0
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	93.09

>KOG2027 consensus Spindle pole body protein [Cytoskeleton]

Probab=100.00  E-value=5.4e-59  Score=458.10  Aligned_cols=182  Identities=56%  Similarity=0.912  Sum_probs=175.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchhcccCCCCChHH
Q 020278           23 LGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEM  102 (328)
Q Consensus        23 LaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~R~~lIe~~kecP~eL  102 (328)
                      |+++||++|+|||+++++|+|||||+||++|+.++|||||||||+|||+++||||||+|||||+.||++|+++++||.||
T Consensus         1 l~~~Rl~lLknKk~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l   80 (388)
T KOG2027|consen    1 LAINRLKLLKNKKEALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDL   80 (388)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 020278          103 REAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLN  182 (328)
Q Consensus       103 kEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~Ps~elv~~yL~EIA~ey~V~  182 (328)
                      +|||+|||||||||+|||||++||++|+.|||++|+..|.+++++++||++||+||++..|+.++|.+||+|||++|||+
T Consensus        81 ~EAVsSlifAA~R~~EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiekLs~~~P~~e~k~k~lkEIA~ey~v~  160 (388)
T KOG2027|consen   81 KEAVSSLIFAAPRLSEVPELREIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEKLSVEAPPKELKEKYLKEIAKEYNVN  160 (388)
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHHhcCCCCcHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhHhhhh-hhcccCCCc
Q 020278          183 WDSSNTESELSKK-HEDLLGGSK  204 (328)
Q Consensus       183 w~~~~~e~~~~~~-~~d~~~~~~  204 (328)
                      |++++.+....+. +++.+.+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~s  183 (388)
T KOG2027|consen  161 WEPDSLSTSEEKSNHEDLLIDPS  183 (388)
T ss_pred             cccCccccccCCCchhhcccccc
Confidence            9999998877766 666665554

>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function

Probab=100.00  E-value=3.8e-58  Score=406.34  Aligned_cols=165  Identities=57%  Similarity=0.912  Sum_probs=154.7

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchhcccCCC
Q 020278           18 KTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKE   97 (328)
Q Consensus        18 Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~R~~lIe~~ke   97 (328)
                      |++||||++||+++|+||.++++++|+|||+||++|+.++||+|||+||+||+++++||+||+|||+|++|+++|+++++
T Consensus         1 K~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~   80 (165)
T PF03398_consen    1 KTQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKE   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TS
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 020278           98 CPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQ  177 (328)
Q Consensus        98 cP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~Ps~elv~~yL~EIA~  177 (328)
                      ||++++|||+|||||+|||+|+|||+.||++|+.|||++|+..|.+|. +++||++|++||++.+|+.++|.+||+|||+
T Consensus        81 ~p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~-~~~Vn~~iv~kLs~~~p~~~~v~~~L~eIA~  159 (165)
T PF03398_consen   81 CPPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENR-DNGVNPRIVEKLSVKPPSEELVEKYLKEIAK  159 (165)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTT-TTTS-HHHHHHCS-S---CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhc-CCCcCHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987 7899999999999999999999999999999


Q ss_pred             HcCCCC
Q 020278          178 EHNLNW  183 (328)
Q Consensus       178 ey~V~w  183 (328)
                      +|||+|
T Consensus       160 e~~i~w  165 (165)
T PF03398_consen  160 EYGIPW  165 (165)
T ss_dssp             HCT-SH
T ss_pred             HcCCCC
Confidence            999999

; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.09  E-value=2.7  Score=38.83  Aligned_cols=126  Identities=24%  Similarity=0.307  Sum_probs=78.0

Q ss_pred             HHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCchhH
Q 020278           45 EIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLEL--FCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDL  122 (328)
Q Consensus        45 DIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLEl--yCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlpEL  122 (328)
                      -+-.-|+.|+.+-|||-+|+-||-.|-  ++..|-+  -.+-+.+|+.---..+.+...+---|-++=-|- .-   =.|
T Consensus        38 K~kkAi~kgN~dvArIyAeNAIRkkne--~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~al-kt---mNL  111 (203)
T KOG3232|consen   38 KLKKAIQKGNMDVARIYAENAIRKKNE--AVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSAL-KT---MNL  111 (203)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---CCH
Confidence            344567899999999999999998874  4444443  456677777554444433322222222221111 11   134


Q ss_pred             HHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCC----CCCCHHHHHHHHHHHHHHcCCCCCC
Q 020278          123 LQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSV----SAPSSEARLKVLKEIAQEHNLNWDS  185 (328)
Q Consensus       123 ~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~----~~Ps~elv~~yL~EIA~ey~V~w~~  185 (328)
                      ..| .++..||-+.|...        -|...++++--.    -..+...|..+|.+.|.|+|+++.-
T Consensus       112 eki-s~~MDkFE~qFedl--------dvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlElnq  169 (203)
T KOG3232|consen  112 EKI-SQLMDKFEKQFEDL--------DVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLELNQ  169 (203)
T ss_pred             HHH-HHHHHHHHHHhhhh--------hhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchhhhh
Confidence            444 46778999999643        244555555422    2245778999999999999998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
3frr_A	191	Structure Of Human Ist1(Ntd) - (Residues 1-189)(P21		1e-26
3frs_A	189	Structure Of Human Ist1(Ntd) (Residues 1-189)(P4321		2e-26
3ggy_A	193	Crystal Structure Of S.Cerevisiae Ist1 N-Terminal D		9e-16

>pdb|3FRR|A Chain A, Structure Of Human Ist1(Ntd) - (Residues 1-189)(P21) Length = 191

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 110/181 (60%), Gaps = 2/181 (1%)
Query: 5   NQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEH 64
             +   G    + + +L L I+R+KLL+ K+    Q+ RKEIA +L AG++  ARIRVEH
Sbjct: 1   GHMLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEH 60
Query: 65  VIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLL 123
           +IRE  +  A  +LEL+C+ LLAR  +++S KE  + + E+V+++I+AAPR  S++ +L 
Sbjct: 61  IIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELK 120
Query: 124 QIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW 183
            + +   AKY KE+   +       +VN  ++ KLSV AP      + L EIA+ +N+ +
Sbjct: 121 IVADQLCAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPY 179
Query: 184 D 184
           +
Sbjct: 180 E 180

>pdb|3FRS|A Chain A, Structure Of Human Ist1(Ntd) (Residues 1-189)(P43212) Length = 189

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 109/175 (62%), Gaps = 2/175 (1%)
Query: 11  GVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQN 70
           G    + + +L L I+R+KLL+ K+    Q+ RKEIA +L AG++  ARIRVEH+IRE  
Sbjct: 5   GFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDY 64
Query: 71  ICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQIKNLF 129
           +  A  +LEL+C+ LLAR  +++S KE  + + E+V+++I+AAPR  S++ +L  + +  
Sbjct: 65  LVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQL 124
Query: 130 SAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
            AKY KE+   +       +VN  ++ KLSV AP      + L EIA+ +N+ ++
Sbjct: 125 CAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178

>pdb|3GGY|A Chain A, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain Length = 193

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 12/189 (6%)
Query: 13  FGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNIC 72
           F  K KT L + I R++  Q K++   +Q R+++AQ L   +E  A  RVE +I +    
Sbjct: 8   FTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHI 67
Query: 73  AAYAVLELFCEFLLARVPILES--------QKECPTEMREAVASIIFAAPRCSDLPDLLQ 124
               +LEL+CE LLARV ++          ++     + EA+ S+I+A     ++ +L Q
Sbjct: 68  ELLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQ 127
Query: 125 IKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
           +K+L + K   EFV  V     D  V   II+K S S P  E     LKEIA+ +++ + 
Sbjct: 128 LKDLMAWKINVEFVNGVIADHID--VPEKIIKKCSPSVPKEELVDLYLKEIAKTYDVPY- 184
Query: 185 SSNTESELS 193
            S  E+ LS
Sbjct: 185 -SKLENSLS 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
3frr_A	191	Uncharacterized protein KIAA0174; ESCRT, ESCRT-III	2e-70
3ggy_A	193	Increased sodium tolerance protein 1; ESCRT-III li	3e-61
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A Length = 191

 Score =  216 bits (551), Expect = 2e-70
 Identities = 67/190 (35%), Positives = 111/190 (58%), Gaps = 2/190 (1%)

Query: 6   QLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHV 65
            +   G    + + +L L I+R+KLL+ K+    Q+ RKEIA +L AG++  ARIRVEH+
Sbjct: 2   HMLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHI 61

Query: 66  IREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQ 124
           IRE  +  A  +LEL+C+ LLAR  +++S KE  + + E+V+++I+AAPR  S++ +L  
Sbjct: 62  IREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKI 121

Query: 125 IKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
           + +   AKY KE+           +VN  ++ KLSV AP      + L EIA+ +N+ ++
Sbjct: 122 VADQLCAKYSKEYGKLCRT-NQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 180

Query: 185 SSNTESELSK 194
             +     + 
Sbjct: 181 PDSVVMAEAP 190

>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A Length = 193

 Score =  193 bits (491), Expect = 3e-61
 Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 10/187 (5%)

Query: 13  FGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNIC 72
           F  K KT L + I R++  Q K++   +Q R+++AQ L   +E  A  RVE +I +    
Sbjct: 8   FTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHI 67

Query: 73  AAYAVLELFCEFLLARVPILES--------QKECPTEMREAVASIIFAAPRCSDLPDLLQ 124
               +LEL+CE LLARV ++          ++     + EA+ S+I+A     ++ +L Q
Sbjct: 68  ELLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQ 127

Query: 125 IKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
           +K+L + K   EFV  V     D  V   II+K S S P  E     LKEIA+ +++ + 
Sbjct: 128 LKDLMAWKINVEFVNGVIADHID--VPEKIIKKCSPSVPKEELVDLYLKEIAKTYDVPYS 185

Query: 185 SSNTESE 191
                  
Sbjct: 186 KLENSLS 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 39/253 (15%), Positives = 66/253 (26%), Gaps = 84/253 (33%)

Query: 12  VFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI----- 66
            F   CK  LT   +R                K++  FL A       I ++H       
Sbjct: 261 AFNLSCKILLT---TR---------------FKQVTDFLSAATT--THISLDHHSMTLTP 300

Query: 67  REQNICAAYAVLELFCEFLLARVPILESQKECPTEMRE----AVASIIFAAPRCSDLPDL 122
            E        V  L  ++L  R   L      P E+       ++  I A     D    
Sbjct: 301 DE--------VKSLLLKYLDCRPQDL------PREVLTTNPRRLS--IIAE-SIRDGLAT 343

Query: 123 LQ-IKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSV---SAPSSEARLKVL------ 172
               K++   K       +++ L P     R + ++LSV   SA      L ++      
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 173 ---KEIAQE------------------HNLNWDSSNTESELSKKHEDLLG---GSKEICG 208
                +  +                   ++  +           H  ++      K    
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 209 WASFPPVPIKQGY 221
               PP      Y
Sbjct: 462 DDLIPPY--LDQY 472

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
3frr_A	191	Uncharacterized protein KIAA0174; ESCRT, ESCRT-III	100.0
3ggy_A	193	Increased sodium tolerance protein 1; ESCRT-III li	100.0
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	83.12
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	81.67

>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A

Probab=100.00  E-value=3.7e-67  Score=473.07  Aligned_cols=182  Identities=37%  Similarity=0.594  Sum_probs=176.9

Q ss_pred             hhhcCCCCccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 020278            6 QLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFL   85 (328)
Q Consensus         6 ~~f~~~~~~sK~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElL   85 (328)
                      .||++||+++|||++||||++||+++|+||+++++++|||||+||++|++++|||||||||+|||++++|||||+|||+|
T Consensus         2 ~mf~~~~~~~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL   81 (191)
T 3frr_A            2 HMLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLL   81 (191)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhchhcccCCCCChHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCCCC
Q 020278           86 LARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPS  164 (328)
Q Consensus        86 l~R~~lIe~~kecP~eLkEAIsSIIyAApR~-~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~Ps  164 (328)
                      ++|+++|+++++||+||+|||+||||||||| +|+|||..||++|+.|||++|+..|.+|+++ +||++|++||++.+|+
T Consensus        82 ~~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~-~Vn~~iv~kLs~~~P~  160 (191)
T 3frr_A           82 LARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIG-TVNDRLMHKLSVEAPP  160 (191)
T ss_dssp             HHTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTS-CSCHHHHHHTCCSCCC
T ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCC-CcCHHHHHHcCCCCcC
Confidence            9999999999999999999999999999998 8999999999999999999999999999865 5999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCch
Q 020278          165 SEARLKVLKEIAQEHNLNWDSSNT  188 (328)
Q Consensus       165 ~elv~~yL~EIA~ey~V~w~~~~~  188 (328)
                      .++|++||+|||++|||+|+|++.
T Consensus       161 ~~lv~~yL~EIA~~y~V~w~p~~~  184 (191)
T 3frr_A          161 KILVERYLIEIAKNYNVPYEPDSV  184 (191)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCCchh
Confidence            999999999999999999999875

>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A

Probab=100.00  E-value=3.5e-63  Score=447.77  Aligned_cols=174  Identities=33%  Similarity=0.445  Sum_probs=169.3

Q ss_pred             CCCccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhch
Q 020278           11 GVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVP   90 (328)
Q Consensus        11 ~~~~sK~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~R~~   90 (328)
                      .+|++|||++||||++||+++|+||+++++++|||||+||++|++++|||||||||+|||++++|||||+|||+|++|++
T Consensus         6 ~~~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~   85 (193)
T 3ggy_A            6 IPFTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQ   85 (193)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccc--------CCCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCC
Q 020278           91 ILES--------QKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSA  162 (328)
Q Consensus        91 lIe~--------~kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~  162 (328)
                      +|++        +++||+||+|||+|||||+|||+|+|||..||++|+.|||++|+..|.+|.  ++||++|++||++.+
T Consensus        86 ll~~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~--~gVn~kiv~kLs~~~  163 (193)
T 3ggy_A           86 VINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADH--IDVPEKIIKKCSPSV  163 (193)
T ss_dssp             HHTTCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHC--TTCCHHHHHHHSCCC
T ss_pred             HHHhhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcC--CCCCHHHHHHcCCCC
Confidence            9999        699999999999999999999999999999999999999999999999985  459999999999999


Q ss_pred             CCHHHHHHHHHHHHHHcCCCCCCC
Q 020278          163 PSSEARLKVLKEIAQEHNLNWDSS  186 (328)
Q Consensus       163 Ps~elv~~yL~EIA~ey~V~w~~~  186 (328)
                      |+.++|++||+|||++|||+|++.
T Consensus       164 P~~elv~~yL~EIA~ey~V~w~~~  187 (193)
T 3ggy_A          164 PKEELVDLYLKEIAKTYDVPYSKL  187 (193)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCCCCCc
Confidence            999999999999999999999864

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=83.12  E-value=2.6  Score=36.55  Aligned_cols=121  Identities=8%  Similarity=0.138  Sum_probs=74.5

Q ss_pred             cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchhccc
Q 020278           15 AKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILES   94 (328)
Q Consensus        15 sK~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~R~~lIe~   94 (328)
                      .+++..|+-++..|.--.+|-...-+....+|-...+.|+.+.|||.+..+||--+...=|--...-.+-+..|+.....
T Consensus        13 r~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~   92 (179)
T 2gd5_A           13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA   92 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778888888888888888888888899999999999999999999999999887644333333333333333322221


Q ss_pred             CCCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHH
Q 020278           95 QKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLA  140 (328)
Q Consensus        95 ~kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~  140 (328)
                      ....-..++.+ +-++=...+.-++|++..+=.-|    .++|...
T Consensus        93 ~~~v~~am~~~-~~~M~~~n~~m~l~~i~~~M~e~----~~e~~~~  133 (179)
T 2gd5_A           93 VLRVAGSLQKS-TEVMKAMQSLVKIPEIQATMREL----SKEMMKA  133 (179)
T ss_dssp             HHHHTSSCCCC-SHHHHTTTSSTTSSSCCHHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHH----HHHHHHH
Confidence            11000001101 12233334444788887665554    4555433

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=81.67  E-value=12  Score=33.88  Aligned_cols=121  Identities=8%  Similarity=0.138  Sum_probs=88.9

Q ss_pred             cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchhccc
Q 020278           15 AKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILES   94 (328)
Q Consensus        15 sK~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~R~~lIe~   94 (328)
                      .+|+..||-.+--|.--.++-...-++...+|-...+.|+.+.|||=+..+||--+...=|--+-.-.+-+..|+...-.
T Consensus        13 r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s   92 (218)
T 3frt_A           13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA   92 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999888888888888888999999999999999999999999999999988877777777777777766655


Q ss_pred             CCCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHH
Q 020278           95 QKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLA  140 (328)
Q Consensus        95 ~kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~  140 (328)
                      ....-..+.. ++.++=...+.-++|+|..+=.    .|.++|...
T Consensus        93 ~~~v~~sM~~-st~~M~~~n~~m~l~~i~~tM~----efekE~~k~  133 (218)
T 3frt_A           93 VLRVAGSLQK-STEVMKAMQSLVKIPEIQATMR----ELSKEMMKA  133 (218)
T ss_dssp             CC----CCCC-CHHHHHHHHHSTTSHHHHHHHH----HHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHH----HHHHHHHHh
Confidence            4443332222 2233333444448999887654    455666653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00